12499ec78SHong Zhang /* 22499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 32499ec78SHong Zhang C = A * B 42499ec78SHong Zhang */ 5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 8c6db04a5SJed Brown #include <petscbt.h> 9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 10af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 121634b032SHong Zhang 135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat); 155e5acdf2Sstefano_zampini #endif 165e5acdf2Sstefano_zampini 17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C) 18d71ae5a4SJacob Faibussowitsch { 198a9c020eSBarry Smith Mat_Product *product = C->product; 208a9c020eSBarry Smith Mat B = product->B; 218a9c020eSBarry Smith 228a9c020eSBarry Smith PetscFunctionBegin; 238a9c020eSBarry Smith PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B)); 248a9c020eSBarry Smith PetscCall(MatDestroy(&B)); 258a9c020eSBarry Smith PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C)); 263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278a9c020eSBarry Smith } 288a9c020eSBarry Smith 29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C) 30d71ae5a4SJacob Faibussowitsch { 314222ddf1SHong Zhang Mat_Product *product = C->product; 324222ddf1SHong Zhang Mat A = product->A, B = product->B; 334222ddf1SHong Zhang MatProductAlgorithm alg = product->alg; 344222ddf1SHong Zhang PetscReal fill = product->fill; 355e68f438SHong Zhang PetscBool flg; 362499ec78SHong Zhang 372499ec78SHong Zhang PetscFunctionBegin; 384222ddf1SHong Zhang /* scalable */ 399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 404222ddf1SHong Zhang if (flg) { 419566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 430fc8cf34SHong Zhang } 447d0a89b7SHong Zhang 454222ddf1SHong Zhang /* nonscalable */ 469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "nonscalable", &flg)); 474222ddf1SHong Zhang if (flg) { 489566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 504222ddf1SHong Zhang } 514222ddf1SHong Zhang 524222ddf1SHong Zhang /* seqmpi */ 539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "seqmpi", &flg)); 544222ddf1SHong Zhang if (flg) { 559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C)); 563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 574222ddf1SHong Zhang } 584222ddf1SHong Zhang 594e84afc0SStefano Zampini /* backend general code */ 609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "backend", &flg)); 614e84afc0SStefano Zampini if (flg) { 629566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 644e84afc0SStefano Zampini } 654e84afc0SStefano Zampini 664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 684222ddf1SHong Zhang if (flg) { 699566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 714222ddf1SHong Zhang } 724222ddf1SHong Zhang #endif 734222ddf1SHong Zhang SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 742499ec78SHong Zhang } 752499ec78SHong Zhang 76d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data) 77d71ae5a4SJacob Faibussowitsch { 786718818eSStefano Zampini Mat_APMPI *ptap = (Mat_APMPI *)data; 79598bc09dSHong Zhang 80598bc09dSHong Zhang PetscFunctionBegin; 819566063dSJacob Faibussowitsch PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r)); 829566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->bufa)); 839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_loc)); 849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_oth)); 859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->Pt)); 869566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->api)); 879566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apj)); 889566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apa)); 899566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap)); 903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91598bc09dSHong Zhang } 92598bc09dSHong Zhang 93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C) 94d71ae5a4SJacob Faibussowitsch { 954ae0847bSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 96f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 97f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 98*99aa8e07SJunchao Zhang PetscScalar *cda, *coa; 99598bc09dSHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 1009ce11a7cSHong Zhang PetscScalar *apa, *ca; 101c12557a1SHong Zhang PetscInt cm = C->rmap->n; 1026718818eSStefano Zampini Mat_APMPI *ptap; 103c12557a1SHong Zhang PetscInt *api, *apj, *apJ, i, k; 10429825010SHong Zhang PetscInt cstart = C->cmap->rstart; 105598bc09dSHong Zhang PetscInt cdnz, conz, k0, k1; 106*99aa8e07SJunchao Zhang const PetscScalar *dummy1, *dummy2, *dummy3, *dummy4; 1079467f45fSHong Zhang MPI_Comm comm; 1089467f45fSHong Zhang PetscMPIInt size; 109598bc09dSHong Zhang 110598bc09dSHong Zhang PetscFunctionBegin; 1116718818eSStefano Zampini MatCheckProduct(C, 3); 1126718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 11328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 1149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 116aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 11780da8df7SHong Zhang 11865e4b4d4SStefano Zampini /* flag CPU mask for C */ 11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 12065e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 12165e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 12265e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 12365e4b4d4SStefano Zampini #endif 12465e4b4d4SStefano Zampini 125a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 126a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */ 1279566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 129598bc09dSHong Zhang 130598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 131598bc09dSHong Zhang /* get data from symbolic products */ 132f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 133c12557a1SHong Zhang p_oth = NULL; 134f4f49eeaSPierre Jolivet if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 135598bc09dSHong Zhang 136598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 137598bc09dSHong Zhang apa = ptap->apa; 138598bc09dSHong Zhang 13929825010SHong Zhang api = ptap->api; 14029825010SHong Zhang apj = ptap->apj; 141ce496241SStefano Zampini /* trigger copy to CPU */ 142*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy1)); 143*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy2)); 144*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(ptap->P_loc, &dummy3)); 145*99aa8e07SJunchao Zhang if (ptap->P_oth) PetscCall(MatSeqAIJGetArrayRead(ptap->P_oth, &dummy4)); 146*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayWrite(c->A, &cda)); 147*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayWrite(c->B, &coa)); 148598bc09dSHong Zhang for (i = 0; i < cm; i++) { 149c12557a1SHong Zhang /* compute apa = A[i,:]*P */ 150e497d3c8SHong Zhang AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa); 151598bc09dSHong Zhang 152598bc09dSHong Zhang /* set values in C */ 153216f1e5cSPierre Jolivet apJ = PetscSafePointerPlusOffset(apj, api[i]); 154598bc09dSHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 155598bc09dSHong Zhang conz = co->i[i + 1] - co->i[i]; 156598bc09dSHong Zhang 157910cf402Sprj- /* 1st off-diagonal part of C */ 1588e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 159598bc09dSHong Zhang k = 0; 160598bc09dSHong Zhang for (k0 = 0; k0 < conz; k0++) { 161598bc09dSHong Zhang if (apJ[k] >= cstart) break; 162598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1635cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 164598bc09dSHong Zhang } 165598bc09dSHong Zhang 166598bc09dSHong Zhang /* diagonal part of C */ 1678e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(cda, cd->i[i]); 168598bc09dSHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 169598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 1705cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 171598bc09dSHong Zhang } 172598bc09dSHong Zhang 173910cf402Sprj- /* 2nd off-diagonal part of C */ 1748e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 175598bc09dSHong Zhang for (; k0 < conz; k0++) { 176598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1775cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 178598bc09dSHong Zhang } 179598bc09dSHong Zhang } 180*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy1)); 181*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy2)); 182*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_loc, &dummy3)); 183*99aa8e07SJunchao Zhang if (ptap->P_oth) PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_oth, &dummy4)); 184*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayWrite(c->A, &cda)); 185*99aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayWrite(c->B, &coa)); 186*99aa8e07SJunchao Zhang 1879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 1889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 190598bc09dSHong Zhang } 191598bc09dSHong Zhang 192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C) 193d71ae5a4SJacob Faibussowitsch { 194ce94432eSBarry Smith MPI_Comm comm; 1959467f45fSHong Zhang PetscMPIInt size; 1963cdca5ebSHong Zhang Mat_APMPI *ptap; 1970298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 1986718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 199f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 2007dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 2014ae0847bSHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 202d14fa243SHong Zhang PetscInt *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi; 2035cab4f04SHong Zhang PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n; 204598bc09dSHong Zhang PetscBT lnkbt; 205bfcd1a73SHong Zhang PetscReal afill; 206b92f168fSBarry Smith MatType mtype; 207598bc09dSHong Zhang 208598bc09dSHong Zhang PetscFunctionBegin; 2096718818eSStefano Zampini MatCheckProduct(C, 4); 21028b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 2119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2139467f45fSHong Zhang 2143cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 2159566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 216598bc09dSHong Zhang 217598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 2189566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 21919f0e57aSHong Zhang 220598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 2219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 222598bc09dSHong Zhang 223f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 2249371c9d4SSatish Balay pi_loc = p_loc->i; 2259371c9d4SSatish Balay pj_loc = p_loc->j; 2269467f45fSHong Zhang if (size > 1) { 227f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 2289371c9d4SSatish Balay pi_oth = p_oth->i; 2299371c9d4SSatish Balay pj_oth = p_oth->j; 23020e3dc75SHong Zhang } else { 23120e3dc75SHong Zhang p_oth = NULL; 2329371c9d4SSatish Balay pi_oth = NULL; 2339371c9d4SSatish Balay pj_oth = NULL; 2349467f45fSHong Zhang } 235598bc09dSHong Zhang 236598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 23784648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 238a1a4e84aSHong Zhang ptap->api = api; 239598bc09dSHong Zhang api[0] = 0; 240598bc09dSHong Zhang 2415cab4f04SHong Zhang /* create and initialize a linked list */ 2429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 243598bc09dSHong Zhang 244bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 2459566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 246598bc09dSHong Zhang current_space = free_space; 247598bc09dSHong Zhang 248d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 249598bc09dSHong Zhang for (i = 0; i < am; i++) { 250598bc09dSHong Zhang /* diagonal portion of A */ 251598bc09dSHong Zhang nzi = adi[i + 1] - adi[i]; 252598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 253598bc09dSHong Zhang row = *adj++; 254598bc09dSHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 255598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 256598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 2579566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 258598bc09dSHong Zhang } 259598bc09dSHong Zhang /* off-diagonal portion of A */ 260598bc09dSHong Zhang nzi = aoi[i + 1] - aoi[i]; 261598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 262598bc09dSHong Zhang row = *aoj++; 263598bc09dSHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 264598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 2659566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 266598bc09dSHong Zhang } 2678c78258cSHong Zhang /* add possible missing diagonal entry */ 2688c78258cSHong Zhang if (C->force_diagonals) { 2698c78258cSHong Zhang j = i + rstart; /* column index */ 2709566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt)); 2718c78258cSHong Zhang } 272598bc09dSHong Zhang 273d14fa243SHong Zhang apnz = lnk[0]; 274598bc09dSHong Zhang api[i + 1] = api[i] + apnz; 275598bc09dSHong Zhang 276598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 277598bc09dSHong Zhang if (current_space->local_remaining < apnz) { 2789566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 279598bc09dSHong Zhang nspacedouble++; 280598bc09dSHong Zhang } 281598bc09dSHong Zhang 282598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 2839566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt)); 2849566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 2852205254eSKarl Rupp 286598bc09dSHong Zhang current_space->array += apnz; 287598bc09dSHong Zhang current_space->local_used += apnz; 288598bc09dSHong Zhang current_space->local_remaining -= apnz; 289598bc09dSHong Zhang } 290598bc09dSHong Zhang 291598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 292598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 29384648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj)); 294a1a4e84aSHong Zhang apj = ptap->apj; 2959566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 2969566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 297598bc09dSHong Zhang 298f84c536bSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 2999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN, &ptap->apa)); 300f84c536bSHong Zhang 3014222ddf1SHong Zhang /* set and assemble symbolic parallel matrix C */ 3029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 3039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 304a2f3521dSMark F. Adams 3059566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 3069566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 3079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 308d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 30917f75172Sandi selinger 3109566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 3119566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3129566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3139566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 314598bc09dSHong Zhang 3154222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 3164222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 317598bc09dSHong Zhang 3184222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 3196718818eSStefano Zampini C->product->data = ptap; 3206718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 321598bc09dSHong Zhang 322bfcd1a73SHong Zhang /* set MatInfo */ 323118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 324bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0; 3254222ddf1SHong Zhang C->info.mallocs = nspacedouble; 3264222ddf1SHong Zhang C->info.fill_ratio_given = fill; 3274222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 328bfcd1a73SHong Zhang 329bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO) 330bfcd1a73SHong Zhang if (api[am]) { 3319566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 3329566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 333bfcd1a73SHong Zhang } else { 3349566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 335bfcd1a73SHong Zhang } 336bfcd1a73SHong Zhang #endif 3373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 338598bc09dSHong Zhang } 339598bc09dSHong Zhang 3406718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat); 3416718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat); 3426718818eSStefano Zampini 343d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C) 344d71ae5a4SJacob Faibussowitsch { 3454222ddf1SHong Zhang Mat_Product *product = C->product; 3464222ddf1SHong Zhang Mat A = product->A, B = product->B; 3479123193aSHong Zhang 3489123193aSHong Zhang PetscFunctionBegin; 3494222ddf1SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) 35098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 3514222ddf1SHong Zhang 3524222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense; 3534222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3559123193aSHong Zhang } 3562ef1f0ffSBarry Smith 357d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C) 358d71ae5a4SJacob Faibussowitsch { 3594222ddf1SHong Zhang Mat_Product *product = C->product; 3604222ddf1SHong Zhang Mat A = product->A, B = product->B; 3614222ddf1SHong Zhang 3624222ddf1SHong Zhang PetscFunctionBegin; 3634222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 36498921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 3654222ddf1SHong Zhang 3664222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense; 3674222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 3683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3694222ddf1SHong Zhang } 3704222ddf1SHong Zhang 371d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C) 372d71ae5a4SJacob Faibussowitsch { 3734222ddf1SHong Zhang Mat_Product *product = C->product; 3744222ddf1SHong Zhang 3754222ddf1SHong Zhang PetscFunctionBegin; 3764222ddf1SHong Zhang switch (product->type) { 377d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 378d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C)); 379d71ae5a4SJacob Faibussowitsch break; 380d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 381d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C)); 382d71ae5a4SJacob Faibussowitsch break; 383d71ae5a4SJacob Faibussowitsch default: 384d71ae5a4SJacob Faibussowitsch break; 3854222ddf1SHong Zhang } 3863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3874222ddf1SHong Zhang } 3889123193aSHong Zhang 3894324174eSBarry Smith typedef struct { 3905ea7661aSPierre Jolivet Mat workB, workB1; 3914324174eSBarry Smith MPI_Request *rwaits, *swaits; 39287753ddeSHong Zhang PetscInt nsends, nrecvs; 39387753ddeSHong Zhang MPI_Datatype *stype, *rtype; 3946718818eSStefano Zampini PetscInt blda; 3954324174eSBarry Smith } MPIAIJ_MPIDense; 3964324174eSBarry Smith 39766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx) 398d71ae5a4SJacob Faibussowitsch { 3994324174eSBarry Smith MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx; 40087753ddeSHong Zhang PetscInt i; 4014324174eSBarry Smith 4024324174eSBarry Smith PetscFunctionBegin; 4039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB)); 4049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB1)); 40548a46eb9SPierre Jolivet for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i])); 40648a46eb9SPierre Jolivet for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i])); 4079566063dSJacob Faibussowitsch PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits)); 4089566063dSJacob Faibussowitsch PetscCall(PetscFree(contents)); 4093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4104324174eSBarry Smith } 4114324174eSBarry Smith 412d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 413d71ae5a4SJacob Faibussowitsch { 414f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 4156497c311SBarry Smith PetscInt nz = aij->B->cmap->n, blda, m, M, n, N; 4164324174eSBarry Smith MPIAIJ_MPIDense *contents; 4174324174eSBarry Smith VecScatter ctx = aij->Mvctx; 4186497c311SBarry Smith PetscInt Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb; 41987753ddeSHong Zhang MPI_Comm comm; 42087753ddeSHong Zhang MPI_Datatype type1, *stype, *rtype; 42187753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 4226497c311SBarry Smith PetscMPIInt *disp, nsends, nrecvs, nrows_to, nrows_from; 4236718818eSStefano Zampini PetscBool cisdense; 4249123193aSHong Zhang 4259123193aSHong Zhang PetscFunctionBegin; 4266718818eSStefano Zampini MatCheckProduct(C, 4); 42728b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 4289566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4299566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense)); 43048a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name)); 4319566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(C, &m, &n)); 4329566063dSJacob Faibussowitsch PetscCall(MatGetSize(C, &M, &N)); 43348a46eb9SPierre Jolivet if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN)); 4349566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 4359566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 4369566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 4379566063dSJacob Faibussowitsch PetscCall(PetscNew(&contents)); 4384324174eSBarry Smith 4399566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4409566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 44187753ddeSHong Zhang 44287753ddeSHong Zhang /* Create column block of B and C for memory scalability when BN is too large */ 44387753ddeSHong Zhang /* Estimate Bbn, column size of Bb */ 44487753ddeSHong Zhang if (nz) { 44587753ddeSHong Zhang Bbn1 = 2 * Am * BN / nz; 446da7cbbe7SHong Zhang if (!Bbn1) Bbn1 = 1; 44787753ddeSHong Zhang } else Bbn1 = BN; 44887753ddeSHong Zhang 44958b7e2c1SStefano Zampini bs = B->cmap->bs; 45087753ddeSHong Zhang Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */ 45187753ddeSHong Zhang if (Bbn1 > BN) Bbn1 = BN; 452462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm)); 45387753ddeSHong Zhang 45487753ddeSHong Zhang /* Enable runtime option for Bbn */ 455d0609cedSBarry Smith PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 4569566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL)); 457d0609cedSBarry Smith PetscOptionsEnd(); 4586718818eSStefano Zampini Bbn = PetscMin(Bbn, BN); 45987753ddeSHong Zhang 4606718818eSStefano Zampini if (Bbn > 0 && Bbn < BN) { 4615ea7661aSPierre Jolivet numBb = BN / Bbn; 4625ea7661aSPierre Jolivet Bbn1 = BN - numBb * Bbn; 4635ea7661aSPierre Jolivet } else numBb = 0; 46487753ddeSHong Zhang 4655ea7661aSPierre Jolivet if (numBb) { 4669566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb)); 4675ea7661aSPierre Jolivet if (Bbn1) { /* Create workB1 for the remaining columns */ 4689566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1)); 46987753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4709566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1)); 4715ea7661aSPierre Jolivet } else contents->workB1 = NULL; 47287753ddeSHong Zhang } 47387753ddeSHong Zhang 47487753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4759566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB)); 47687753ddeSHong Zhang 47787753ddeSHong Zhang /* Use MPI derived data type to reduce memory required by the send/recv buffers */ 4789566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits)); 47987753ddeSHong Zhang contents->stype = stype; 48087753ddeSHong Zhang contents->nsends = nsends; 48187753ddeSHong Zhang 48287753ddeSHong Zhang contents->rtype = rtype; 48387753ddeSHong Zhang contents->nrecvs = nrecvs; 4846718818eSStefano Zampini contents->blda = blda; 48587753ddeSHong Zhang 4869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bm + 1, &disp)); 4876497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) { 4886497c311SBarry Smith PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to)); 4896497c311SBarry Smith for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */ 4909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1)); 4919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i])); 4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&stype[i])); 4939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 49487753ddeSHong Zhang } 49587753ddeSHong Zhang 4966497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) { 49787753ddeSHong Zhang /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */ 4986497c311SBarry Smith PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from)); 49987753ddeSHong Zhang disp[0] = 0; 5009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1)); 5019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i])); 5029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&rtype[i])); 5039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 50487753ddeSHong Zhang } 50587753ddeSHong Zhang 5069566063dSJacob Faibussowitsch PetscCall(PetscFree(disp)); 5079566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 5089566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 5099566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 5109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 5119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 5126718818eSStefano Zampini 5136718818eSStefano Zampini C->product->data = contents; 5146718818eSStefano Zampini C->product->destroy = MatMPIAIJ_MPIDenseDestroy; 5154222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense; 5163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5179123193aSHong Zhang } 5189123193aSHong Zhang 51993aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool); 5209612af27SStefano Zampini 521f32d5d43SBarry Smith /* 5222636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 5232636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 52487753ddeSHong Zhang 5259612af27SStefano Zampini Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense() 526f32d5d43SBarry Smith */ 5279612af27SStefano Zampini 52866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB) 529d71ae5a4SJacob Faibussowitsch { 530f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 5311683a169SBarry Smith const PetscScalar *b; 53287753ddeSHong Zhang PetscScalar *rvalues; 533f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 53487753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 5353515ee7fSJunchao Zhang const PetscMPIInt *sprocs, *rprocs; 5366497c311SBarry Smith PetscMPIInt nsends, nrecvs; 537f32d5d43SBarry Smith MPI_Request *swaits, *rwaits; 538ce94432eSBarry Smith MPI_Comm comm; 5396497c311SBarry Smith PetscMPIInt tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi; 5404324174eSBarry Smith MPIAIJ_MPIDense *contents; 5414324174eSBarry Smith Mat workB; 54287753ddeSHong Zhang MPI_Datatype *stype, *rtype; 5436718818eSStefano Zampini PetscInt blda; 544f32d5d43SBarry Smith 545f32d5d43SBarry Smith PetscFunctionBegin; 5466718818eSStefano Zampini MatCheckProduct(C, 4); 54728b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5486497c311SBarry Smith PetscCall(PetscMPIIntCast(B->cmap->N, &ncols)); 5496497c311SBarry Smith PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows)); 5506718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 5519566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/)); 5529566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/)); 5539566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends, &nsends_mpi)); 5549566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi)); 555b45e3bf4SStefano Zampini if (Bbidx == 0) workB = *outworkB = contents->workB; 556b45e3bf4SStefano Zampini else workB = *outworkB = contents->workB1; 55708401ef6SPierre Jolivet PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows); 5583515ee7fSJunchao Zhang swaits = contents->swaits; 5593515ee7fSJunchao Zhang rwaits = contents->rwaits; 560f32d5d43SBarry Smith 5619566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 5629566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 56308401ef6SPierre Jolivet PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda); 5649566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(workB, &rvalues)); 565f32d5d43SBarry Smith 56687753ddeSHong Zhang /* Post recv, use MPI derived data type to save memory */ 5679566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 56887753ddeSHong Zhang rtype = contents->rtype; 5696497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i)); 570f32d5d43SBarry Smith 57187753ddeSHong Zhang stype = contents->stype; 5726497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i)); 5732636ff26SBarry Smith 5749566063dSJacob Faibussowitsch if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE)); 5759566063dSJacob Faibussowitsch if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE)); 576f32d5d43SBarry Smith 5779566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL)); 5789566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL)); 5799566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 5809566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(workB, &rvalues)); 5813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 58287753ddeSHong Zhang } 583f32d5d43SBarry Smith 584d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C) 585d71ae5a4SJacob Faibussowitsch { 586f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 587f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense *)B->data; 588f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense *)C->data; 589f32d5d43SBarry Smith Mat workB; 59087753ddeSHong Zhang MPIAIJ_MPIDense *contents; 5919123193aSHong Zhang 5929123193aSHong Zhang PetscFunctionBegin; 5936718818eSStefano Zampini MatCheckProduct(C, 3); 59428b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5956718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 596f32d5d43SBarry Smith /* diagonal block of A times all local rows of B */ 5975ea7661aSPierre Jolivet /* TODO: this calls a symbolic multiplication every time, which could be avoided */ 598fb842aefSJose E. Roman PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_CURRENT, &cdense->A)); 5995ea7661aSPierre Jolivet if (contents->workB->cmap->n == B->cmap->N) { 60087753ddeSHong Zhang /* get off processor parts of B needed to complete C=A*B */ 6019566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB)); 602f32d5d43SBarry Smith 603f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 6049566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 60587753ddeSHong Zhang } else { 6065ea7661aSPierre Jolivet Mat Bb, Cb; 6076497c311SBarry Smith PetscInt BN = B->cmap->N, n = contents->workB->cmap->n; 608664c1e85SStefano Zampini PetscBool ccpu; 60987753ddeSHong Zhang 61008401ef6SPierre Jolivet PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n); 611664c1e85SStefano Zampini /* Prevent from unneeded copies back and forth from the GPU 612664c1e85SStefano Zampini when getting and restoring the submatrix 613664c1e85SStefano Zampini We need a proper GPU code for AIJ * dense in parallel */ 6149566063dSJacob Faibussowitsch PetscCall(MatBoundToCPU(C, &ccpu)); 6159566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, PETSC_TRUE)); 6166497c311SBarry Smith for (PetscInt i = 0; i < BN; i += n) { 617a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb)); 618a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb)); 61987753ddeSHong Zhang 6205ea7661aSPierre Jolivet /* get off processor parts of B needed to complete C=A*B */ 6219566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB)); 6225ea7661aSPierre Jolivet 6235ea7661aSPierre Jolivet /* off-diagonal block of A times nonlocal rows of B */ 6245ea7661aSPierre Jolivet cdense = (Mat_MPIDense *)Cb->data; 6259566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 6269566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(B, &Bb)); 6279566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(C, &Cb)); 62887753ddeSHong Zhang } 6299566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, ccpu)); 63087753ddeSHong Zhang } 6313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6329123193aSHong Zhang } 633cf1a0672SHong Zhang 634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C) 635d71ae5a4SJacob Faibussowitsch { 636cf1a0672SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 637f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 638f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 639cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj, *aoi = ao->i, *aoj; 640cf1a0672SHong Zhang PetscScalar *ada, *aoa, *cda = cd->a, *coa = co->a; 641cf1a0672SHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 642cf1a0672SHong Zhang PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj; 64329825010SHong Zhang PetscScalar *pa_loc, *pa_oth, *pa, valtmp, *ca; 64429825010SHong Zhang PetscInt cm = C->rmap->n, anz, pnz; 6456718818eSStefano Zampini Mat_APMPI *ptap; 64680da8df7SHong Zhang PetscScalar *apa_sparse; 647ce496241SStefano Zampini const PetscScalar *dummy; 648cf1a0672SHong Zhang PetscInt *api, *apj, *apJ, i, j, k, row; 64929825010SHong Zhang PetscInt cstart = C->cmap->rstart; 65029825010SHong Zhang PetscInt cdnz, conz, k0, k1, nextp; 651a7c7454dSHong Zhang MPI_Comm comm; 652a7c7454dSHong Zhang PetscMPIInt size; 6531634b032SHong Zhang 6541634b032SHong Zhang PetscFunctionBegin; 6556718818eSStefano Zampini MatCheckProduct(C, 3); 6566718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 65728b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 6589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 6599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 660aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 661a7c7454dSHong Zhang 66265e4b4d4SStefano Zampini /* flag CPU mask for C */ 66365e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 66465e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 66565e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 66665e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 66765e4b4d4SStefano Zampini #endif 66880da8df7SHong Zhang apa_sparse = ptap->apa; 66980da8df7SHong Zhang 670cf1a0672SHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 671cf1a0672SHong Zhang /* update numerical values of P_oth and P_loc */ 6729566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 6739566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 674cf1a0672SHong Zhang 675cf1a0672SHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 676cf1a0672SHong Zhang /* get data from symbolic products */ 677f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 6789371c9d4SSatish Balay pi_loc = p_loc->i; 6799371c9d4SSatish Balay pj_loc = p_loc->j; 6809371c9d4SSatish Balay pa_loc = p_loc->a; 681a7c7454dSHong Zhang if (size > 1) { 682f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 6839371c9d4SSatish Balay pi_oth = p_oth->i; 6849371c9d4SSatish Balay pj_oth = p_oth->j; 6859371c9d4SSatish Balay pa_oth = p_oth->a; 68620e3dc75SHong Zhang } else { 6879371c9d4SSatish Balay p_oth = NULL; 6889371c9d4SSatish Balay pi_oth = NULL; 6899371c9d4SSatish Balay pj_oth = NULL; 6909371c9d4SSatish Balay pa_oth = NULL; 691a7c7454dSHong Zhang } 692cf1a0672SHong Zhang 693ce496241SStefano Zampini /* trigger copy to CPU */ 6949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 6959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 6969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 6979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 69829825010SHong Zhang api = ptap->api; 69929825010SHong Zhang apj = ptap->apj; 700cf1a0672SHong Zhang for (i = 0; i < cm; i++) { 70129825010SHong Zhang apJ = apj + api[i]; 70229825010SHong Zhang 703cf1a0672SHong Zhang /* diagonal portion of A */ 704cf1a0672SHong Zhang anz = adi[i + 1] - adi[i]; 705cf1a0672SHong Zhang adj = ad->j + adi[i]; 706cf1a0672SHong Zhang ada = ad->a + adi[i]; 707cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 708cf1a0672SHong Zhang row = adj[j]; 709cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 710cf1a0672SHong Zhang pj = pj_loc + pi_loc[row]; 711cf1a0672SHong Zhang pa = pa_loc + pi_loc[row]; 71229825010SHong Zhang /* perform sparse axpy */ 713cf1a0672SHong Zhang valtmp = ada[j]; 71429825010SHong Zhang nextp = 0; 71529825010SHong Zhang for (k = 0; nextp < pnz; k++) { 71629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 71729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 71829825010SHong Zhang } 7191634b032SHong Zhang } 7209566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 721cf1a0672SHong Zhang } 7221634b032SHong Zhang 723cf1a0672SHong Zhang /* off-diagonal portion of A */ 724cf1a0672SHong Zhang anz = aoi[i + 1] - aoi[i]; 7258e3a54c0SPierre Jolivet aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]); 7268e3a54c0SPierre Jolivet aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]); 727cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 728cf1a0672SHong Zhang row = aoj[j]; 729cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 730cf1a0672SHong Zhang pj = pj_oth + pi_oth[row]; 731cf1a0672SHong Zhang pa = pa_oth + pi_oth[row]; 73229825010SHong Zhang /* perform sparse axpy */ 733cf1a0672SHong Zhang valtmp = aoa[j]; 73429825010SHong Zhang nextp = 0; 73529825010SHong Zhang for (k = 0; nextp < pnz; k++) { 73629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 73729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 73829825010SHong Zhang } 739cf1a0672SHong Zhang } 7409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 741cf1a0672SHong Zhang } 7421634b032SHong Zhang 743cf1a0672SHong Zhang /* set values in C */ 744cf1a0672SHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 745cf1a0672SHong Zhang conz = co->i[i + 1] - co->i[i]; 7461634b032SHong Zhang 747910cf402Sprj- /* 1st off-diagonal part of C */ 7488e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 749cf1a0672SHong Zhang k = 0; 750cf1a0672SHong Zhang for (k0 = 0; k0 < conz; k0++) { 751cf1a0672SHong Zhang if (apJ[k] >= cstart) break; 75229825010SHong Zhang ca[k0] = apa_sparse[k]; 75329825010SHong Zhang apa_sparse[k] = 0.0; 754cf1a0672SHong Zhang k++; 755cf1a0672SHong Zhang } 7561634b032SHong Zhang 757cf1a0672SHong Zhang /* diagonal part of C */ 758cf1a0672SHong Zhang ca = cda + cd->i[i]; 759cf1a0672SHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 76029825010SHong Zhang ca[k1] = apa_sparse[k]; 76129825010SHong Zhang apa_sparse[k] = 0.0; 762cf1a0672SHong Zhang k++; 763cf1a0672SHong Zhang } 764cf1a0672SHong Zhang 765910cf402Sprj- /* 2nd off-diagonal part of C */ 7668e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 767cf1a0672SHong Zhang for (; k0 < conz; k0++) { 76829825010SHong Zhang ca[k0] = apa_sparse[k]; 76929825010SHong Zhang apa_sparse[k] = 0.0; 770cf1a0672SHong Zhang k++; 771cf1a0672SHong Zhang } 772cf1a0672SHong Zhang } 7739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 7749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 7753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 776cf1a0672SHong Zhang } 777cf1a0672SHong Zhang 7780fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */ 779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C) 780d71ae5a4SJacob Faibussowitsch { 781ce94432eSBarry Smith MPI_Comm comm; 782a7c7454dSHong Zhang PetscMPIInt size; 7833cdca5ebSHong Zhang Mat_APMPI *ptap; 7840298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 7856718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 786f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 7877dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 788cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 7898c78258cSHong Zhang PetscInt i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1; 790e5ab8c0aSKarl Rupp PetscInt am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20; 791cf1a0672SHong Zhang PetscReal afill; 792b92f168fSBarry Smith MatType mtype; 793cf1a0672SHong Zhang 794cf1a0672SHong Zhang PetscFunctionBegin; 7956718818eSStefano Zampini MatCheckProduct(C, 4); 79628b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 7979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 7989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 799a7c7454dSHong Zhang 8003cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 8019566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 802cf1a0672SHong Zhang 803cf1a0672SHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 8049566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 80519f0e57aSHong Zhang 806cf1a0672SHong Zhang /* get P_loc by taking all local rows of P */ 8079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 808cf1a0672SHong Zhang 809f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 8109371c9d4SSatish Balay pi_loc = p_loc->i; 8119371c9d4SSatish Balay pj_loc = p_loc->j; 812a7c7454dSHong Zhang if (size > 1) { 813f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 8149371c9d4SSatish Balay pi_oth = p_oth->i; 8159371c9d4SSatish Balay pj_oth = p_oth->j; 816968382fdSHong Zhang } else { 81720e3dc75SHong Zhang p_oth = NULL; 8189371c9d4SSatish Balay pi_oth = NULL; 8199371c9d4SSatish Balay pj_oth = NULL; 820a7c7454dSHong Zhang } 821cf1a0672SHong Zhang 822cf1a0672SHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 82384648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 824cf1a0672SHong Zhang ptap->api = api; 825cf1a0672SHong Zhang api[0] = 0; 826cf1a0672SHong Zhang 8279566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk)); 828cf1a0672SHong Zhang 829cf1a0672SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 8309566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 831cf1a0672SHong Zhang current_space = free_space; 832d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 833cf1a0672SHong Zhang for (i = 0; i < am; i++) { 834cf1a0672SHong Zhang /* diagonal portion of A */ 835cf1a0672SHong Zhang nzi = adi[i + 1] - adi[i]; 836cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 837cf1a0672SHong Zhang row = *adj++; 838cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 839cf1a0672SHong Zhang Jptr = pj_loc + pi_loc[row]; 8408a210135Sandi selinger /* Expand list if it is not long enough */ 8418328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8428328dd82Sandi selinger lsize = pnz + apnz_max; 8439566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8448a210135Sandi selinger } 845cf1a0672SHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 8469566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8478a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8488a210135Sandi selinger api[i + 1] = api[i] + apnz; 8498c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 850cf1a0672SHong Zhang } 851cf1a0672SHong Zhang /* off-diagonal portion of A */ 852cf1a0672SHong Zhang nzi = aoi[i + 1] - aoi[i]; 853cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 854cf1a0672SHong Zhang row = *aoj++; 855cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 856cf1a0672SHong Zhang Jptr = pj_oth + pi_oth[row]; 8578a210135Sandi selinger /* Expand list if it is not long enough */ 8588328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8598328dd82Sandi selinger lsize = pnz + apnz_max; 8609566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8618a210135Sandi selinger } 8628a210135Sandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 8639566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8648a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8658a210135Sandi selinger api[i + 1] = api[i] + apnz; 8668c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 867cf1a0672SHong Zhang } 8688c78258cSHong Zhang 8698c78258cSHong Zhang /* add missing diagonal entry */ 8708c78258cSHong Zhang if (C->force_diagonals) { 8718c78258cSHong Zhang j = i + rstart; /* column index */ 8729566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk)); 8738c78258cSHong Zhang } 8748c78258cSHong Zhang 875f84c536bSHong Zhang apnz = *lnk; 876cf1a0672SHong Zhang api[i + 1] = api[i] + apnz; 8778a210135Sandi selinger if (apnz > apnz_max) apnz_max = apnz; 878cf1a0672SHong Zhang 879cf1a0672SHong Zhang /* if free space is not available, double the total space in the list */ 880cf1a0672SHong Zhang if (current_space->local_remaining < apnz) { 8819566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 882cf1a0672SHong Zhang nspacedouble++; 883cf1a0672SHong Zhang } 884cf1a0672SHong Zhang 885cf1a0672SHong Zhang /* Copy data into free space, then initialize lnk */ 8869566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk)); 8879566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 8882205254eSKarl Rupp 889cf1a0672SHong Zhang current_space->array += apnz; 890cf1a0672SHong Zhang current_space->local_used += apnz; 891cf1a0672SHong Zhang current_space->local_remaining -= apnz; 892cf1a0672SHong Zhang } 893cf1a0672SHong Zhang 894cf1a0672SHong Zhang /* Allocate space for apj, initialize apj, and */ 895cf1a0672SHong Zhang /* destroy list of free space and other temporary array(s) */ 89684648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj)); 897cf1a0672SHong Zhang apj = ptap->apj; 8989566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 8999566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 900cf1a0672SHong Zhang 9014222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 9029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 9039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 9049566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 9059566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 9069566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 907d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 908cf1a0672SHong Zhang 9094222ddf1SHong Zhang /* malloc apa for assembly C */ 9109566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(apnz_max, &ptap->apa)); 91117f75172Sandi selinger 9129566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 9139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 9149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 9159566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 916cf1a0672SHong Zhang 9174222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 9184222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 919cf1a0672SHong Zhang 9204222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 9216718818eSStefano Zampini C->product->data = ptap; 9226718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 923cf1a0672SHong Zhang 924cf1a0672SHong Zhang /* set MatInfo */ 925118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 926cf1a0672SHong Zhang if (afill < 1.0) afill = 1.0; 9274222ddf1SHong Zhang C->info.mallocs = nspacedouble; 9284222ddf1SHong Zhang C->info.fill_ratio_given = fill; 9294222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 930cf1a0672SHong Zhang 931cf1a0672SHong Zhang #if defined(PETSC_USE_INFO) 932cf1a0672SHong Zhang if (api[am]) { 9339566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 9349566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 935cf1a0672SHong Zhang } else { 9369566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 937cf1a0672SHong Zhang } 938cf1a0672SHong Zhang #endif 9393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9401634b032SHong Zhang } 941f96d37fcSHong Zhang 942a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication. */ 943a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the */ 944a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once. */ 945d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out) 946d71ae5a4SJacob Faibussowitsch { 947a9d7e0ccSandi selinger int i = 0, j = 0, k = 0, l = 0; 948a9d7e0ccSandi selinger 949a9d7e0ccSandi selinger /* Traverse all three arrays */ 950a9d7e0ccSandi selinger while (i < size1 && j < size2 && k < size3) { 951a9d7e0ccSandi selinger if (in1[i] < in2[j] && in1[i] < in3[k]) { 952a9d7e0ccSandi selinger out[l++] = in1[i++]; 9539371c9d4SSatish Balay } else if (in2[j] < in1[i] && in2[j] < in3[k]) { 954a9d7e0ccSandi selinger out[l++] = in2[j++]; 9559371c9d4SSatish Balay } else if (in3[k] < in1[i] && in3[k] < in2[j]) { 956a9d7e0ccSandi selinger out[l++] = in3[k++]; 9579371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] < in3[k]) { 958a9d7e0ccSandi selinger out[l++] = in1[i]; 959a9d7e0ccSandi selinger i++, j++; 9609371c9d4SSatish Balay } else if (in1[i] == in3[k] && in1[i] < in2[j]) { 961a9d7e0ccSandi selinger out[l++] = in1[i]; 962a9d7e0ccSandi selinger i++, k++; 9639371c9d4SSatish Balay } else if (in3[k] == in2[j] && in2[j] < in1[i]) { 964a9d7e0ccSandi selinger out[l++] = in2[j]; 965a9d7e0ccSandi selinger k++, j++; 9669371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] == in3[k]) { 967a9d7e0ccSandi selinger out[l++] = in1[i]; 968a9d7e0ccSandi selinger i++, j++, k++; 969a9d7e0ccSandi selinger } 970a9d7e0ccSandi selinger } 971a9d7e0ccSandi selinger 972a9d7e0ccSandi selinger /* Traverse two remaining arrays */ 973a9d7e0ccSandi selinger while (i < size1 && j < size2) { 974a9d7e0ccSandi selinger if (in1[i] < in2[j]) { 975a9d7e0ccSandi selinger out[l++] = in1[i++]; 9769371c9d4SSatish Balay } else if (in1[i] > in2[j]) { 977a9d7e0ccSandi selinger out[l++] = in2[j++]; 9789371c9d4SSatish Balay } else { 979a9d7e0ccSandi selinger out[l++] = in1[i]; 980a9d7e0ccSandi selinger i++, j++; 981a9d7e0ccSandi selinger } 982a9d7e0ccSandi selinger } 983a9d7e0ccSandi selinger 984a9d7e0ccSandi selinger while (i < size1 && k < size3) { 985a9d7e0ccSandi selinger if (in1[i] < in3[k]) { 986a9d7e0ccSandi selinger out[l++] = in1[i++]; 9879371c9d4SSatish Balay } else if (in1[i] > in3[k]) { 988a9d7e0ccSandi selinger out[l++] = in3[k++]; 9899371c9d4SSatish Balay } else { 990a9d7e0ccSandi selinger out[l++] = in1[i]; 991a9d7e0ccSandi selinger i++, k++; 992a9d7e0ccSandi selinger } 993a9d7e0ccSandi selinger } 994a9d7e0ccSandi selinger 995a9d7e0ccSandi selinger while (k < size3 && j < size2) { 996a9d7e0ccSandi selinger if (in3[k] < in2[j]) { 997a9d7e0ccSandi selinger out[l++] = in3[k++]; 9989371c9d4SSatish Balay } else if (in3[k] > in2[j]) { 999a9d7e0ccSandi selinger out[l++] = in2[j++]; 10009371c9d4SSatish Balay } else { 1001a9d7e0ccSandi selinger out[l++] = in3[k]; 1002a9d7e0ccSandi selinger k++, j++; 1003a9d7e0ccSandi selinger } 1004a9d7e0ccSandi selinger } 1005a9d7e0ccSandi selinger 1006a9d7e0ccSandi selinger /* Traverse one remaining array */ 1007a9d7e0ccSandi selinger while (i < size1) out[l++] = in1[i++]; 1008a9d7e0ccSandi selinger while (j < size2) out[l++] = in2[j++]; 1009a9d7e0ccSandi selinger while (k < size3) out[l++] = in3[k++]; 1010a9d7e0ccSandi selinger 1011a9d7e0ccSandi selinger *size4 = l; 1012a9d7e0ccSandi selinger } 1013a9d7e0ccSandi selinger 101473b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and */ 101573b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential) */ 101673b67375Sandi selinger /* matrix-matrix multiplications. */ 1017d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C) 1018d71ae5a4SJacob Faibussowitsch { 1019a9d7e0ccSandi selinger MPI_Comm comm; 1020a9d7e0ccSandi selinger PetscMPIInt size; 10213cdca5ebSHong Zhang Mat_APMPI *ptap; 1022a9d7e0ccSandi selinger PetscFreeSpaceList free_space_diag = NULL, current_space = NULL; 1023a9d7e0ccSandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1024f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc; 1025a9d7e0ccSandi selinger Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1026a9d7e0ccSandi selinger Mat_SeqAIJ *adpd_seq, *p_off, *aopoth_seq; 1027a9d7e0ccSandi selinger PetscInt adponz, adpdnz; 10287dbaa2c6Sandi selinger PetscInt *pi_loc, *dnz, *onz; 1029a9d7e0ccSandi selinger PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart; 10309371c9d4SSatish Balay PetscInt *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj; 1031a016958eSandi selinger PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend; 1032a9d7e0ccSandi selinger PetscBT lnkbt; 1033a9d7e0ccSandi selinger PetscReal afill; 1034a9d7e0ccSandi selinger PetscMPIInt rank; 1035a9d7e0ccSandi selinger Mat adpd, aopoth; 1036b92f168fSBarry Smith MatType mtype; 1037e83e5f86SFande Kong const char *prefix; 1038a9d7e0ccSandi selinger 1039a9d7e0ccSandi selinger PetscFunctionBegin; 10406718818eSStefano Zampini MatCheckProduct(C, 4); 104128b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 10429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 10439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10459566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend)); 1046a9d7e0ccSandi selinger 10473cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 10489566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1049a9d7e0ccSandi selinger 1050a9d7e0ccSandi selinger /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 10519566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1052a9d7e0ccSandi selinger 1053a9d7e0ccSandi selinger /* get P_loc by taking all local rows of P */ 10549566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 1055a9d7e0ccSandi selinger 1056f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 1057a9d7e0ccSandi selinger pi_loc = p_loc->i; 1058a9d7e0ccSandi selinger 1059a9d7e0ccSandi selinger /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */ 106084648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 106184648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &adpoi)); 1062a9d7e0ccSandi selinger 1063a9d7e0ccSandi selinger adpoi[0] = 0; 1064a9d7e0ccSandi selinger ptap->api = api; 1065a9d7e0ccSandi selinger api[0] = 0; 1066a9d7e0ccSandi selinger 1067a9d7e0ccSandi selinger /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */ 10689566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 1069d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 1070a9d7e0ccSandi selinger 1071a9d7e0ccSandi selinger /* Symbolic calc of A_loc_diag * P_loc_diag */ 10729566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10739566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd)); 10749566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10759566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(adpd, prefix)); 10769566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_")); 10774222ddf1SHong Zhang 10789566063dSJacob Faibussowitsch PetscCall(MatProductSetType(adpd, MATPRODUCT_AB)); 10799566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(adpd, "sorted")); 10809566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(adpd, fill)); 10819566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(adpd)); 10828c78258cSHong Zhang 10838c78258cSHong Zhang adpd->force_diagonals = C->force_diagonals; 10849566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic(adpd)); 10854222ddf1SHong Zhang 1086a9d7e0ccSandi selinger adpd_seq = (Mat_SeqAIJ *)((adpd)->data); 10879371c9d4SSatish Balay adpdi = adpd_seq->i; 10889371c9d4SSatish Balay adpdj = adpd_seq->j; 1089f4f49eeaSPierre Jolivet p_off = (Mat_SeqAIJ *)p->B->data; 10909371c9d4SSatish Balay poff_i = p_off->i; 10919371c9d4SSatish Balay poff_j = p_off->j; 1092a9d7e0ccSandi selinger 109373b67375Sandi selinger /* j_temp stores indices of a result row before they are added to the linked list */ 109484648c2dSPierre Jolivet PetscCall(PetscMalloc1(pN, &j_temp)); 1095a9d7e0ccSandi selinger 1096a9d7e0ccSandi selinger /* Symbolic calc of the A_diag * p_loc_off */ 1097a9d7e0ccSandi selinger /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 10989566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag)); 1099a9d7e0ccSandi selinger current_space = free_space_diag; 1100a9d7e0ccSandi selinger 1101a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1102a9d7e0ccSandi selinger /* A_diag * P_loc_off */ 1103a9d7e0ccSandi selinger nzi = adi[i + 1] - adi[i]; 1104a9d7e0ccSandi selinger for (j = 0; j < nzi; j++) { 1105a9d7e0ccSandi selinger row = *adj++; 1106a9d7e0ccSandi selinger pnz = poff_i[row + 1] - poff_i[row]; 1107a9d7e0ccSandi selinger Jptr = poff_j + poff_i[row]; 1108ad540459SPierre Jolivet for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]]; 1109a9d7e0ccSandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 11109566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt)); 1111a9d7e0ccSandi selinger } 1112a9d7e0ccSandi selinger 1113a9d7e0ccSandi selinger adponz = lnk[0]; 1114a9d7e0ccSandi selinger adpoi[i + 1] = adpoi[i] + adponz; 1115a9d7e0ccSandi selinger 1116a9d7e0ccSandi selinger /* if free space is not available, double the total space in the list */ 1117a9d7e0ccSandi selinger if (current_space->local_remaining < adponz) { 11189566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), ¤t_space)); 1119a9d7e0ccSandi selinger nspacedouble++; 1120a9d7e0ccSandi selinger } 1121a9d7e0ccSandi selinger 1122a9d7e0ccSandi selinger /* Copy data into free space, then initialize lnk */ 11239566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt)); 1124a9d7e0ccSandi selinger 1125a9d7e0ccSandi selinger current_space->array += adponz; 1126a9d7e0ccSandi selinger current_space->local_used += adponz; 1127a9d7e0ccSandi selinger current_space->local_remaining -= adponz; 1128a9d7e0ccSandi selinger } 1129a9d7e0ccSandi selinger 1130a9d7e0ccSandi selinger /* Symbolic calc of A_off * P_oth */ 11319566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(a->B, prefix)); 11329566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_")); 11339566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth)); 11349566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth)); 1135a9d7e0ccSandi selinger aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data); 11369371c9d4SSatish Balay aopothi = aopoth_seq->i; 11379371c9d4SSatish Balay aopothj = aopoth_seq->j; 1138a9d7e0ccSandi selinger 1139a9d7e0ccSandi selinger /* Allocate space for apj, adpj, aopj, ... */ 1140a9d7e0ccSandi selinger /* destroy lists of free space and other temporary array(s) */ 1141a9d7e0ccSandi selinger 114284648c2dSPierre Jolivet PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj)); 114384648c2dSPierre Jolivet PetscCall(PetscMalloc1(adpoi[am], &adpoj)); 1144a9d7e0ccSandi selinger 1145a9d7e0ccSandi selinger /* Copy from linked list to j-array */ 11469566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj)); 11479566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 1148a9d7e0ccSandi selinger 1149a9d7e0ccSandi selinger adpoJ = adpoj; 1150a9d7e0ccSandi selinger adpdJ = adpdj; 1151a9d7e0ccSandi selinger aopJ = aopothj; 1152a9d7e0ccSandi selinger apj = ptap->apj; 1153a9d7e0ccSandi selinger apJ = apj; /* still empty */ 1154a9d7e0ccSandi selinger 1155a9d7e0ccSandi selinger /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */ 1156a9d7e0ccSandi selinger /* A_diag * P_loc_diag to get A*P */ 1157a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1158a9d7e0ccSandi selinger aopnz = aopothi[i + 1] - aopothi[i]; 1159a9d7e0ccSandi selinger adponz = adpoi[i + 1] - adpoi[i]; 1160a9d7e0ccSandi selinger adpdnz = adpdi[i + 1] - adpdi[i]; 1161a9d7e0ccSandi selinger 1162a9d7e0ccSandi selinger /* Correct indices from A_diag*P_diag */ 1163ad540459SPierre Jolivet for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart; 1164a9d7e0ccSandi selinger /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */ 1165a9d7e0ccSandi selinger Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ); 11669566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz)); 1167a9d7e0ccSandi selinger 1168a9d7e0ccSandi selinger aopJ += aopnz; 1169a9d7e0ccSandi selinger adpoJ += adponz; 1170a9d7e0ccSandi selinger adpdJ += adpdnz; 1171a9d7e0ccSandi selinger apJ += apnz; 1172a9d7e0ccSandi selinger api[i + 1] = api[i] + apnz; 1173a9d7e0ccSandi selinger } 1174a9d7e0ccSandi selinger 1175a9d7e0ccSandi selinger /* malloc apa to store dense row A[i,:]*P */ 117684648c2dSPierre Jolivet PetscCall(PetscCalloc1(pN, &ptap->apa)); 1177a9d7e0ccSandi selinger 11784222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 11799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 11809566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 11819566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 11829566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 11839566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1184d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 118517f75172Sandi selinger 11869566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 11879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 11889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 11899566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 119017f75172Sandi selinger 11914222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 11924222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1193a9d7e0ccSandi selinger 11944222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 11956718818eSStefano Zampini C->product->data = ptap; 11966718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 1197a9d7e0ccSandi selinger 1198a9d7e0ccSandi selinger /* set MatInfo */ 119973b67375Sandi selinger afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 120073b67375Sandi selinger if (afill < 1.0) afill = 1.0; 12014222ddf1SHong Zhang C->info.mallocs = nspacedouble; 12024222ddf1SHong Zhang C->info.fill_ratio_given = fill; 12034222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1204a9d7e0ccSandi selinger 1205a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO) 1206a9d7e0ccSandi selinger if (api[am]) { 12079566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 12089566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1209a9d7e0ccSandi selinger } else { 12109566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1211a9d7e0ccSandi selinger } 1212a9d7e0ccSandi selinger #endif 1213a9d7e0ccSandi selinger 12149566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aopoth)); 12159566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adpd)); 12169566063dSJacob Faibussowitsch PetscCall(PetscFree(j_temp)); 12179566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoj)); 12189566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoi)); 12193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1220a9d7e0ccSandi selinger } 1221a9d7e0ccSandi selinger 1222c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */ 1223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C) 1224d71ae5a4SJacob Faibussowitsch { 12256718818eSStefano Zampini Mat_APMPI *ptap; 122660552ceaSHong Zhang Mat Pt; 1227c216dbf3SHong Zhang 1228c216dbf3SHong Zhang PetscFunctionBegin; 12296718818eSStefano Zampini MatCheckProduct(C, 3); 12306718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 123128b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 123228b400f6SJacob Faibussowitsch PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 123360552ceaSHong Zhang 123460552ceaSHong Zhang Pt = ptap->Pt; 12351cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(P, Pt)); 12369566063dSJacob Faibussowitsch PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt)); 12379566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C)); 12383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1239f96d37fcSHong Zhang } 1240f96d37fcSHong Zhang 1241c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */ 1242d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C) 1243d71ae5a4SJacob Faibussowitsch { 12443cdca5ebSHong Zhang Mat_APMPI *ptap; 12456718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1246912837bbSHong Zhang MPI_Comm comm; 1247912837bbSHong Zhang PetscMPIInt size, rank; 1248912837bbSHong Zhang PetscFreeSpaceList free_space = NULL, current_space = NULL; 12494ede91e3SHong Zhang PetscInt pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n; 12506497c311SBarry Smith PetscInt *lnk, i, k, rstart; 1251912837bbSHong Zhang PetscBT lnkbt; 12526497c311SBarry Smith PetscMPIInt tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend; 1253ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted = 0; 12548c78258cSHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols; 12556497c311SBarry Smith PetscInt len, *dnz, *onz, *owners, nzi; 1256912837bbSHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1257912837bbSHong Zhang MPI_Request *swaits, *rwaits; 1258912837bbSHong Zhang MPI_Status *sstatus, rstatus; 1259912837bbSHong Zhang PetscLayout rowmap; 1260912837bbSHong Zhang PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */ 1261912837bbSHong Zhang PetscMPIInt *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */ 12627f3e1f30SHong Zhang PetscInt *Jptr, *prmap = p->garray, con, j, Crmax; 12634ede91e3SHong Zhang Mat_SeqAIJ *a_loc, *c_loc, *c_oth; 1264eec179cfSJacob Faibussowitsch PetscHMapI ta; 1265b92f168fSBarry Smith MatType mtype; 1266e83e5f86SFande Kong const char *prefix; 1267912837bbSHong Zhang 1268912837bbSHong Zhang PetscFunctionBegin; 12699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 12709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 12719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1272912837bbSHong Zhang 12734222ddf1SHong Zhang /* create symbolic parallel matrix C */ 12749566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 12759566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 1276912837bbSHong Zhang 12774222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 1278912837bbSHong Zhang 12793cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 12809566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1281912837bbSHong Zhang 1282912837bbSHong Zhang /* (0) compute Rd = Pd^T, Ro = Po^T */ 1283acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd)); 1284acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro)); 1285912837bbSHong Zhang 1286669e9c86SHong Zhang /* (1) compute symbolic A_loc */ 12879566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc)); 1288912837bbSHong Zhang 12894ede91e3SHong Zhang /* (2-1) compute symbolic C_oth = Ro*A_loc */ 12909566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 12919566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix)); 12929566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_")); 12939566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth)); 12949566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth)); 1295912837bbSHong Zhang 1296912837bbSHong Zhang /* (3) send coj of C_oth to other processors */ 1297912837bbSHong Zhang /* determine row ownership */ 12989566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &rowmap)); 1299912837bbSHong Zhang rowmap->n = pn; 1300912837bbSHong Zhang rowmap->bs = 1; 13019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rowmap)); 1302912837bbSHong Zhang owners = rowmap->range; 1303912837bbSHong Zhang 1304912837bbSHong Zhang /* determine the number of messages to send, their lengths */ 130584648c2dSPierre Jolivet PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co)); 13069566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_s, size)); 13079566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_si, size)); 1308912837bbSHong Zhang 1309912837bbSHong Zhang c_oth = (Mat_SeqAIJ *)ptap->C_oth->data; 13109371c9d4SSatish Balay coi = c_oth->i; 13119371c9d4SSatish Balay coj = c_oth->j; 1312912837bbSHong Zhang con = ptap->C_oth->rmap->n; 1313912837bbSHong Zhang proc = 0; 1314912837bbSHong Zhang for (i = 0; i < con; i++) { 1315912837bbSHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 13167f3e1f30SHong Zhang len_si[proc]++; /* num of rows in Co(=Pt*A) to be sent to [proc] */ 1317912837bbSHong Zhang len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */ 1318912837bbSHong Zhang } 1319912837bbSHong Zhang 1320912837bbSHong Zhang len = 0; /* max length of buf_si[], see (4) */ 1321912837bbSHong Zhang owners_co[0] = 0; 1322912837bbSHong Zhang nsend = 0; 1323912837bbSHong Zhang for (proc = 0; proc < size; proc++) { 1324912837bbSHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1325912837bbSHong Zhang if (len_s[proc]) { 1326912837bbSHong Zhang nsend++; 1327912837bbSHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */ 1328912837bbSHong Zhang len += len_si[proc]; 1329912837bbSHong Zhang } 1330912837bbSHong Zhang } 1331912837bbSHong Zhang 1332912837bbSHong Zhang /* determine the number and length of messages to receive for coi and coj */ 13339566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv)); 13349566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri)); 1335912837bbSHong Zhang 1336912837bbSHong Zhang /* post the Irecv and Isend of coj */ 13379566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 13389566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits)); 133984648c2dSPierre Jolivet PetscCall(PetscMalloc1(nsend, &swaits)); 1340912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1341912837bbSHong Zhang if (!len_s[proc]) continue; 1342912837bbSHong Zhang i = owners_co[proc]; 13436497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1344912837bbSHong Zhang k++; 1345912837bbSHong Zhang } 1346912837bbSHong Zhang 13477f3e1f30SHong Zhang /* (2-2) compute symbolic C_loc = Rd*A_loc */ 13489566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix)); 13499566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_")); 13509566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc)); 13519566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc)); 1352912837bbSHong Zhang c_loc = (Mat_SeqAIJ *)ptap->C_loc->data; 1353912837bbSHong Zhang 1354912837bbSHong Zhang /* receives coj are complete */ 135548a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13569566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13579566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1358912837bbSHong Zhang 1359912837bbSHong Zhang /* add received column indices into ta to update Crmax */ 1360f4f49eeaSPierre Jolivet a_loc = (Mat_SeqAIJ *)ptap->A_loc->data; 1361669e9c86SHong Zhang 1362669e9c86SHong Zhang /* create and initialize a linked list */ 1363eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */ 13644ede91e3SHong Zhang MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta); 1365669e9c86SHong Zhang 1366912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1367912837bbSHong Zhang Jptr = buf_rj[k]; 1368c76ffc5fSJacob Faibussowitsch for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 1369912837bbSHong Zhang } 1370eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 1371eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 1372912837bbSHong Zhang 1373912837bbSHong Zhang /* (4) send and recv coi */ 13749566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 13759566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits)); 137684648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s)); 1377912837bbSHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1378912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1379912837bbSHong Zhang if (!len_s[proc]) continue; 1380912837bbSHong Zhang /* form outgoing message for i-structure: 1381912837bbSHong Zhang buf_si[0]: nrows to be sent 1382912837bbSHong Zhang [1:nrows]: row index (global) 1383912837bbSHong Zhang [nrows+1:2*nrows+1]: i-structure index 1384912837bbSHong Zhang */ 1385912837bbSHong Zhang nrows = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */ 1386912837bbSHong Zhang buf_si_i = buf_si + nrows + 1; 1387912837bbSHong Zhang buf_si[0] = nrows; 1388912837bbSHong Zhang buf_si_i[0] = 0; 1389912837bbSHong Zhang nrows = 0; 1390912837bbSHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1391912837bbSHong Zhang nzi = coi[i + 1] - coi[i]; 1392912837bbSHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1393912837bbSHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1394912837bbSHong Zhang nrows++; 1395912837bbSHong Zhang } 13966497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1397912837bbSHong Zhang k++; 1398912837bbSHong Zhang buf_si += len_si[proc]; 1399912837bbSHong Zhang } 140048a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 14019566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 14029566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1403912837bbSHong Zhang 14049566063dSJacob Faibussowitsch PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co)); 14059566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 14069566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 14079566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1408912837bbSHong Zhang 14094222ddf1SHong Zhang /* (5) compute the local portion of C */ 1410bbea24aaSStefano Zampini /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */ 14119566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(Crmax, &free_space)); 1412912837bbSHong Zhang current_space = free_space; 1413912837bbSHong Zhang 14149566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci)); 1415912837bbSHong Zhang for (k = 0; k < nrecv; k++) { 1416912837bbSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1417912837bbSHong Zhang nrows = *buf_ri_k[k]; 1418912837bbSHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1419a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1420912837bbSHong Zhang } 1421912837bbSHong Zhang 1422d0609cedSBarry Smith MatPreallocateBegin(comm, pn, an, dnz, onz); 14239566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt)); 14248c78258cSHong Zhang for (i = 0; i < pn; i++) { /* for each local row of C */ 14254222ddf1SHong Zhang /* add C_loc into C */ 1426912837bbSHong Zhang nzi = c_loc->i[i + 1] - c_loc->i[i]; 1427912837bbSHong Zhang Jptr = c_loc->j + c_loc->i[i]; 14289566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 1429912837bbSHong Zhang 1430912837bbSHong Zhang /* add received col data into lnk */ 1431912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1432912837bbSHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1433912837bbSHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1434912837bbSHong Zhang Jptr = buf_rj[k] + *nextci[k]; 14359566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 14369371c9d4SSatish Balay nextrow[k]++; 14379371c9d4SSatish Balay nextci[k]++; 1438912837bbSHong Zhang } 1439912837bbSHong Zhang } 14408c78258cSHong Zhang 14418c78258cSHong Zhang /* add missing diagonal entry */ 14428c78258cSHong Zhang if (C->force_diagonals) { 14438c78258cSHong Zhang k = i + owners[rank]; /* column index */ 14449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt)); 14458c78258cSHong Zhang } 14468c78258cSHong Zhang 1447912837bbSHong Zhang nzi = lnk[0]; 1448912837bbSHong Zhang 1449912837bbSHong Zhang /* copy data into free space, then initialize lnk */ 14509566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt)); 14519566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz)); 1452912837bbSHong Zhang } 14539566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 14549566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 14559566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceDestroy(free_space)); 1456912837bbSHong Zhang 1457912837bbSHong Zhang /* local sizes and preallocation */ 14589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE)); 145958b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs)); 146058b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs)); 14619566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1462d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 1463912837bbSHong Zhang 146469be949aSStefano Zampini /* add C_loc and C_oth to C */ 14659566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, NULL)); 146669be949aSStefano Zampini for (i = 0; i < pn; i++) { 14678c78258cSHong Zhang ncols = c_loc->i[i + 1] - c_loc->i[i]; 14688c78258cSHong Zhang cols = c_loc->j + c_loc->i[i]; 14698c78258cSHong Zhang row = rstart + i; 14709566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 14718c78258cSHong Zhang 147248a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES)); 147369be949aSStefano Zampini } 147469be949aSStefano Zampini for (i = 0; i < con; i++) { 14758c78258cSHong Zhang ncols = c_oth->i[i + 1] - c_oth->i[i]; 14768c78258cSHong Zhang cols = c_oth->j + c_oth->i[i]; 14778c78258cSHong Zhang row = prmap[i]; 14789566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 147969be949aSStefano Zampini } 14809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 14819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 14829566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 148369be949aSStefano Zampini 1484912837bbSHong Zhang /* members in merge */ 14859566063dSJacob Faibussowitsch PetscCall(PetscFree(id_r)); 14869566063dSJacob Faibussowitsch PetscCall(PetscFree(len_r)); 14879566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri[0])); 14889566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri)); 14899566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj[0])); 14909566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj)); 14919566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rowmap)); 1492912837bbSHong Zhang 14934222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 14946718818eSStefano Zampini C->product->data = ptap; 14956718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 14963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1497912837bbSHong Zhang } 1498912837bbSHong Zhang 1499d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C) 1500d71ae5a4SJacob Faibussowitsch { 15016718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1502669e9c86SHong Zhang Mat_SeqAIJ *c_seq; 15036718818eSStefano Zampini Mat_APMPI *ptap; 1504669e9c86SHong Zhang Mat A_loc, C_loc, C_oth; 1505912837bbSHong Zhang PetscInt i, rstart, rend, cm, ncols, row; 1506912837bbSHong Zhang const PetscInt *cols; 1507912837bbSHong Zhang const PetscScalar *vals; 1508912837bbSHong Zhang 1509912837bbSHong Zhang PetscFunctionBegin; 15106718818eSStefano Zampini MatCheckProduct(C, 3); 15116718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 151228b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 151328b400f6SJacob Faibussowitsch PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15149566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(C)); 1515912837bbSHong Zhang 1516669e9c86SHong Zhang /* These matrices are obtained in MatTransposeMatMultSymbolic() */ 1517669e9c86SHong Zhang /* 1) get R = Pd^T, Ro = Po^T */ 15181cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd)); 1519acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd)); 15201cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro)); 1521acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro)); 1522669e9c86SHong Zhang 1523669e9c86SHong Zhang /* 2) compute numeric A_loc */ 15249566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc)); 1525912837bbSHong Zhang 1526669e9c86SHong Zhang /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */ 15274ede91e3SHong Zhang A_loc = ptap->A_loc; 1528f4f49eeaSPierre Jolivet PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc)); 1529f4f49eeaSPierre Jolivet PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth)); 1530912837bbSHong Zhang C_loc = ptap->C_loc; 1531912837bbSHong Zhang C_oth = ptap->C_oth; 1532912837bbSHong Zhang 153369be949aSStefano Zampini /* add C_loc and C_oth to C */ 15349566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, &rend)); 1535912837bbSHong Zhang 1536912837bbSHong Zhang /* C_loc -> C */ 1537912837bbSHong Zhang cm = C_loc->rmap->N; 1538912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_loc->data; 1539912837bbSHong Zhang cols = c_seq->j; 1540912837bbSHong Zhang vals = c_seq->a; 1541912837bbSHong Zhang for (i = 0; i < cm; i++) { 1542912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1543912837bbSHong Zhang row = rstart + i; 15449566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15459371c9d4SSatish Balay cols += ncols; 15469371c9d4SSatish Balay vals += ncols; 1547912837bbSHong Zhang } 1548912837bbSHong Zhang 1549912837bbSHong Zhang /* Co -> C, off-processor part */ 1550912837bbSHong Zhang cm = C_oth->rmap->N; 1551912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_oth->data; 1552912837bbSHong Zhang cols = c_seq->j; 1553912837bbSHong Zhang vals = c_seq->a; 1554912837bbSHong Zhang for (i = 0; i < cm; i++) { 1555912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1556912837bbSHong Zhang row = p->garray[i]; 15579566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15589371c9d4SSatish Balay cols += ncols; 15599371c9d4SSatish Balay vals += ncols; 1560912837bbSHong Zhang } 15619566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 15629566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 15639566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 15643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1565912837bbSHong Zhang } 1566912837bbSHong Zhang 1567d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C) 1568d71ae5a4SJacob Faibussowitsch { 1569d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 15706718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1571f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data; 15721cdffd5eSHong Zhang Mat_APMPI *ap; 1573e745005bSHong Zhang PetscInt *adj; 1574e745005bSHong Zhang PetscInt i, j, k, anz, pnz, row, *cj, nexta; 1575e745005bSHong Zhang MatScalar *ada, *ca, valtmp; 1576d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n; 1577ce94432eSBarry Smith MPI_Comm comm; 15786497c311SBarry Smith PetscMPIInt size, rank, taga, *len_s, proc; 15796497c311SBarry Smith PetscInt *owners, nrows, **buf_ri_k, **nextrow, **nextci; 1580d6ab1dc0SHong Zhang PetscInt **buf_ri, **buf_rj; 1581d6ab1dc0SHong Zhang PetscInt cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */ 1582d6ab1dc0SHong Zhang MPI_Request *s_waits, *r_waits; 1583d6ab1dc0SHong Zhang MPI_Status *status; 1584d6ab1dc0SHong Zhang MatScalar **abuf_r, *ba_i, *pA, *coa, *ba; 1585ce496241SStefano Zampini const PetscScalar *dummy; 15864e201bd7SHong Zhang PetscInt *ai, *aj, *coi, *coj, *poJ, *pdJ; 1587d6ab1dc0SHong Zhang Mat A_loc; 1588d6ab1dc0SHong Zhang Mat_SeqAIJ *a_loc; 1589d6ab1dc0SHong Zhang 1590d6ab1dc0SHong Zhang PetscFunctionBegin; 15916718818eSStefano Zampini MatCheckProduct(C, 3); 15921cdffd5eSHong Zhang ap = (Mat_APMPI *)C->product->data; 15931cdffd5eSHong Zhang PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data"); 15941cdffd5eSHong Zhang PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15959566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 15969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 15979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1598d6ab1dc0SHong Zhang 15991cdffd5eSHong Zhang merge = ap->merge; 1600d6ab1dc0SHong Zhang 1601e745005bSHong Zhang /* 2) compute numeric C_seq = P_loc^T*A_loc */ 1602d6ab1dc0SHong Zhang /* get data from symbolic products */ 16039371c9d4SSatish Balay coi = merge->coi; 16049371c9d4SSatish Balay coj = merge->coj; 160584648c2dSPierre Jolivet PetscCall(PetscCalloc1(coi[pon], &coa)); 16069371c9d4SSatish Balay bi = merge->bi; 16079371c9d4SSatish Balay bj = merge->bj; 1608d6ab1dc0SHong Zhang owners = merge->rowmap->range; 160984648c2dSPierre Jolivet PetscCall(PetscCalloc1(bi[cm], &ba)); 1610d6ab1dc0SHong Zhang 1611d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 16121cdffd5eSHong Zhang A_loc = ap->A_loc; 16139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc)); 161457508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data; 1615d6ab1dc0SHong Zhang ai = a_loc->i; 1616d6ab1dc0SHong Zhang aj = a_loc->j; 1617d6ab1dc0SHong Zhang 1618ce496241SStefano Zampini /* trigger copy to CPU */ 16199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy)); 16209566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy)); 16219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy)); 16229566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy)); 1623d6ab1dc0SHong Zhang for (i = 0; i < am; i++) { 1624d6ab1dc0SHong Zhang anz = ai[i + 1] - ai[i]; 1625d6ab1dc0SHong Zhang adj = aj + ai[i]; 1626d6ab1dc0SHong Zhang ada = a_loc->a + ai[i]; 1627d6ab1dc0SHong Zhang 1628d6ab1dc0SHong Zhang /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */ 1629d6ab1dc0SHong Zhang /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */ 1630d6ab1dc0SHong Zhang pnz = po->i[i + 1] - po->i[i]; 1631d6ab1dc0SHong Zhang poJ = po->j + po->i[i]; 1632d6ab1dc0SHong Zhang pA = po->a + po->i[i]; 1633d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1634d6ab1dc0SHong Zhang row = poJ[j]; 1635d6ab1dc0SHong Zhang cj = coj + coi[row]; 1636d6ab1dc0SHong Zhang ca = coa + coi[row]; 1637e745005bSHong Zhang /* perform sparse axpy */ 1638e745005bSHong Zhang nexta = 0; 1639d6ab1dc0SHong Zhang valtmp = pA[j]; 1640e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1641e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1642e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1643e745005bSHong Zhang nexta++; 1644d6ab1dc0SHong Zhang } 1645e745005bSHong Zhang } 16469566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1647d6ab1dc0SHong Zhang } 1648d6ab1dc0SHong Zhang 1649d6ab1dc0SHong Zhang /* put the value into Cd (diagonal part) */ 1650d6ab1dc0SHong Zhang pnz = pd->i[i + 1] - pd->i[i]; 1651d6ab1dc0SHong Zhang pdJ = pd->j + pd->i[i]; 1652d6ab1dc0SHong Zhang pA = pd->a + pd->i[i]; 1653d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1654d6ab1dc0SHong Zhang row = pdJ[j]; 1655d6ab1dc0SHong Zhang cj = bj + bi[row]; 1656d6ab1dc0SHong Zhang ca = ba + bi[row]; 1657e745005bSHong Zhang /* perform sparse axpy */ 1658e745005bSHong Zhang nexta = 0; 1659d6ab1dc0SHong Zhang valtmp = pA[j]; 1660e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1661e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1662e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1663e745005bSHong Zhang nexta++; 1664d6ab1dc0SHong Zhang } 1665e745005bSHong Zhang } 16669566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1667d6ab1dc0SHong Zhang } 1668d6ab1dc0SHong Zhang } 1669d6ab1dc0SHong Zhang 1670d6ab1dc0SHong Zhang /* 3) send and recv matrix values coa */ 1671d6ab1dc0SHong Zhang buf_ri = merge->buf_ri; 1672d6ab1dc0SHong Zhang buf_rj = merge->buf_rj; 1673d6ab1dc0SHong Zhang len_s = merge->len_s; 16749566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &taga)); 16759566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 1676d6ab1dc0SHong Zhang 167784648c2dSPierre Jolivet PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status)); 1678d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1679d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1680d6ab1dc0SHong Zhang i = merge->owners_co[proc]; 16816497c311SBarry Smith PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 1682d6ab1dc0SHong Zhang k++; 1683d6ab1dc0SHong Zhang } 16849566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 16859566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 1686d6ab1dc0SHong Zhang 16879566063dSJacob Faibussowitsch PetscCall(PetscFree2(s_waits, status)); 16889566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 16899566063dSJacob Faibussowitsch PetscCall(PetscFree(coa)); 1690d6ab1dc0SHong Zhang 1691d6ab1dc0SHong Zhang /* 4) insert local Cseq and received values into Cmpi */ 16929566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1693d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1694e745005bSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1695f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 1696d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1697a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1698d6ab1dc0SHong Zhang } 1699d6ab1dc0SHong Zhang 1700d6ab1dc0SHong Zhang for (i = 0; i < cm; i++) { 1701d6ab1dc0SHong Zhang row = owners[rank] + i; /* global row index of C_seq */ 1702d6ab1dc0SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of C */ 1703d6ab1dc0SHong Zhang ba_i = ba + bi[i]; 1704d6ab1dc0SHong Zhang bnz = bi[i + 1] - bi[i]; 1705d6ab1dc0SHong Zhang /* add received vals into ba */ 1706d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1707d6ab1dc0SHong Zhang /* i-th row */ 1708d6ab1dc0SHong Zhang if (i == *nextrow[k]) { 1709d6ab1dc0SHong Zhang cnz = *(nextci[k] + 1) - *nextci[k]; 1710f4f49eeaSPierre Jolivet cj = buf_rj[k] + *nextci[k]; 1711f4f49eeaSPierre Jolivet ca = abuf_r[k] + *nextci[k]; 1712d6ab1dc0SHong Zhang nextcj = 0; 1713d6ab1dc0SHong Zhang for (j = 0; nextcj < cnz; j++) { 1714d6ab1dc0SHong Zhang if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */ 1715d6ab1dc0SHong Zhang ba_i[j] += ca[nextcj++]; 1716d6ab1dc0SHong Zhang } 1717d6ab1dc0SHong Zhang } 17189371c9d4SSatish Balay nextrow[k]++; 17199371c9d4SSatish Balay nextci[k]++; 17209566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * cnz)); 1721d6ab1dc0SHong Zhang } 1722d6ab1dc0SHong Zhang } 17239566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES)); 1724d6ab1dc0SHong Zhang } 17259566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 17269566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1727d6ab1dc0SHong Zhang 17289566063dSJacob Faibussowitsch PetscCall(PetscFree(ba)); 17299566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 17309566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 17319566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 17323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1733d6ab1dc0SHong Zhang } 1734d6ab1dc0SHong Zhang 1735d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C) 1736d71ae5a4SJacob Faibussowitsch { 1737b419842dSStefano Zampini Mat A_loc; 17381cdffd5eSHong Zhang Mat_APMPI *ap; 17390298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 17406718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data; 1741d6ab1dc0SHong Zhang PetscInt *pdti, *pdtj, *poti, *potj, *ptJ; 1742d6ab1dc0SHong Zhang PetscInt nnz; 1743d6ab1dc0SHong Zhang PetscInt *lnk, *owners_co, *coi, *coj, i, k, pnz, row; 1744d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, pn = P->cmap->n; 1745ce94432eSBarry Smith MPI_Comm comm; 17466497c311SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc; 1747d6ab1dc0SHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k; 17486497c311SBarry Smith PetscInt len, *dnz, *onz, *owners; 1749d6ab1dc0SHong Zhang PetscInt nzi, *bi, *bj; 1750d6ab1dc0SHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1751d6ab1dc0SHong Zhang MPI_Request *swaits, *rwaits; 1752d6ab1dc0SHong Zhang MPI_Status *sstatus, rstatus; 1753d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 1754d6ab1dc0SHong Zhang PetscInt *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j; 1755d6ab1dc0SHong Zhang PetscReal afill = 1.0, afill_tmp; 1756eec179cfSJacob Faibussowitsch PetscInt rstart = P->cmap->rstart, rmax, Armax; 1757b419842dSStefano Zampini Mat_SeqAIJ *a_loc; 1758eec179cfSJacob Faibussowitsch PetscHMapI ta; 1759b92f168fSBarry Smith MatType mtype; 1760d6ab1dc0SHong Zhang 1761d6ab1dc0SHong Zhang PetscFunctionBegin; 17629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1763d6ab1dc0SHong Zhang /* check if matrix local sizes are compatible */ 17649371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, 17659371c9d4SSatish Balay A->rmap->rend, P->rmap->rstart, P->rmap->rend); 1766d6ab1dc0SHong Zhang 17679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1769d6ab1dc0SHong Zhang 17703cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 17711cdffd5eSHong Zhang PetscCall(PetscNew(&ap)); 1772d6ab1dc0SHong Zhang 1773d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 17749566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc)); 17752205254eSKarl Rupp 17761cdffd5eSHong Zhang ap->A_loc = A_loc; 177757508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data; 1778d6ab1dc0SHong Zhang ai = a_loc->i; 1779d6ab1dc0SHong Zhang aj = a_loc->j; 1780d6ab1dc0SHong Zhang 1781d6ab1dc0SHong Zhang /* determine symbolic Co=(p->B)^T*A - send to others */ 17829566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 17839566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 1784d6ab1dc0SHong Zhang pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors 1785d6ab1dc0SHong Zhang >= (num of nonzero rows of C_seq) - pn */ 17869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pon + 1, &coi)); 1787d6ab1dc0SHong Zhang coi[0] = 0; 1788d6ab1dc0SHong Zhang 1789d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */ 1790f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am])); 17919566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1792d6ab1dc0SHong Zhang current_space = free_space; 179319f0e57aSHong Zhang 1794d6ab1dc0SHong Zhang /* create and initialize a linked list */ 1795eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta)); 17964b38b95cSHong Zhang MatRowMergeMax_SeqAIJ(a_loc, am, ta); 1797eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 179833ba5e2fSHong Zhang 17999566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1800d6ab1dc0SHong Zhang 1801d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1802d6ab1dc0SHong Zhang pnz = poti[i + 1] - poti[i]; 1803d6ab1dc0SHong Zhang ptJ = potj + poti[i]; 1804d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1805d6ab1dc0SHong Zhang row = ptJ[j]; /* row of A_loc == col of Pot */ 1806d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1807d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1808d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 18099566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1810d6ab1dc0SHong Zhang } 1811d6ab1dc0SHong Zhang nnz = lnk[0]; 1812d6ab1dc0SHong Zhang 1813d6ab1dc0SHong Zhang /* If free space is not available, double the total space in the list */ 1814d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 18159566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1816d6ab1dc0SHong Zhang nspacedouble++; 1817d6ab1dc0SHong Zhang } 1818d6ab1dc0SHong Zhang 1819d6ab1dc0SHong Zhang /* Copy data into free space, and zero out denserows */ 18209566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 18212205254eSKarl Rupp 1822d6ab1dc0SHong Zhang current_space->array += nnz; 1823d6ab1dc0SHong Zhang current_space->local_used += nnz; 1824d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 18252205254eSKarl Rupp 1826d6ab1dc0SHong Zhang coi[i + 1] = coi[i] + nnz; 1827d6ab1dc0SHong Zhang } 1828d6ab1dc0SHong Zhang 182984648c2dSPierre Jolivet PetscCall(PetscMalloc1(coi[pon], &coj)); 18309566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, coj)); 18319566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */ 18322205254eSKarl Rupp 1833118727c9SMark F. Adams afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1); 1834d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 1835d6ab1dc0SHong Zhang 1836d6ab1dc0SHong Zhang /* send j-array (coj) of Co to other processors */ 1837d6ab1dc0SHong Zhang /* determine row ownership */ 18389566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 18399566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 18402205254eSKarl Rupp 1841d6ab1dc0SHong Zhang merge->rowmap->n = pn; 1842d6ab1dc0SHong Zhang merge->rowmap->bs = 1; 18432205254eSKarl Rupp 18449566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 1845d6ab1dc0SHong Zhang owners = merge->rowmap->range; 1846d6ab1dc0SHong Zhang 1847d6ab1dc0SHong Zhang /* determine the number of messages to send, their lengths */ 18489566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &len_si)); 18499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &merge->len_s)); 18502205254eSKarl Rupp 1851d6ab1dc0SHong Zhang len_s = merge->len_s; 1852d6ab1dc0SHong Zhang merge->nsend = 0; 1853d6ab1dc0SHong Zhang 185484648c2dSPierre Jolivet PetscCall(PetscMalloc1(size + 1, &owners_co)); 1855d6ab1dc0SHong Zhang 1856d6ab1dc0SHong Zhang proc = 0; 1857d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1858d6ab1dc0SHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 1859d6ab1dc0SHong Zhang len_si[proc]++; /* num of rows in Co to be sent to [proc] */ 1860d6ab1dc0SHong Zhang len_s[proc] += coi[i + 1] - coi[i]; 1861d6ab1dc0SHong Zhang } 1862d6ab1dc0SHong Zhang 1863d6ab1dc0SHong Zhang len = 0; /* max length of buf_si[] */ 1864d6ab1dc0SHong Zhang owners_co[0] = 0; 1865d6ab1dc0SHong Zhang for (proc = 0; proc < size; proc++) { 1866d6ab1dc0SHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1867216f1e5cSPierre Jolivet if (len_s[proc]) { 1868d6ab1dc0SHong Zhang merge->nsend++; 1869d6ab1dc0SHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); 1870d6ab1dc0SHong Zhang len += len_si[proc]; 1871d6ab1dc0SHong Zhang } 1872d6ab1dc0SHong Zhang } 1873d6ab1dc0SHong Zhang 1874d6ab1dc0SHong Zhang /* determine the number and length of messages to receive for coi and coj */ 18759566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 18769566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 1877d6ab1dc0SHong Zhang 1878d6ab1dc0SHong Zhang /* post the Irecv and Isend of coj */ 18799566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 18809566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits)); 188184648c2dSPierre Jolivet PetscCall(PetscMalloc1(merge->nsend, &swaits)); 1882d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1883d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1884d6ab1dc0SHong Zhang i = owners_co[proc]; 18856497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1886d6ab1dc0SHong Zhang k++; 1887d6ab1dc0SHong Zhang } 1888d6ab1dc0SHong Zhang 1889d6ab1dc0SHong Zhang /* receives and sends of coj are complete */ 18909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &sstatus)); 1891d6ab1dc0SHong Zhang for (i = 0; i < merge->nrecv; i++) { 1892ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 18939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1894d6ab1dc0SHong Zhang } 18959566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 18969566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 1897d6ab1dc0SHong Zhang 18980acc65b4SHong Zhang /* add received column indices into table to update Armax */ 1899c4762a1bSJed Brown /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */ 19000acc65b4SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 19010acc65b4SHong Zhang Jptr = buf_rj[k]; 1902c76ffc5fSJacob Faibussowitsch for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 19030acc65b4SHong Zhang } 1904eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 19050acc65b4SHong Zhang 1906d6ab1dc0SHong Zhang /* send and recv coi */ 19079566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 19089566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits)); 190984648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s)); 1910d6ab1dc0SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1911d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1912d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1913d6ab1dc0SHong Zhang /* form outgoing message for i-structure: 1914d6ab1dc0SHong Zhang buf_si[0]: nrows to be sent 1915d6ab1dc0SHong Zhang [1:nrows]: row index (global) 1916d6ab1dc0SHong Zhang [nrows+1:2*nrows+1]: i-structure index 1917d6ab1dc0SHong Zhang */ 1918d6ab1dc0SHong Zhang nrows = len_si[proc] / 2 - 1; 1919d6ab1dc0SHong Zhang buf_si_i = buf_si + nrows + 1; 1920d6ab1dc0SHong Zhang buf_si[0] = nrows; 1921d6ab1dc0SHong Zhang buf_si_i[0] = 0; 1922d6ab1dc0SHong Zhang nrows = 0; 1923d6ab1dc0SHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1924d6ab1dc0SHong Zhang nzi = coi[i + 1] - coi[i]; 1925d6ab1dc0SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1926d6ab1dc0SHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1927d6ab1dc0SHong Zhang nrows++; 1928d6ab1dc0SHong Zhang } 19296497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1930d6ab1dc0SHong Zhang k++; 1931d6ab1dc0SHong Zhang buf_si += len_si[proc]; 1932d6ab1dc0SHong Zhang } 1933d6ab1dc0SHong Zhang i = merge->nrecv; 1934d6ab1dc0SHong Zhang while (i--) { 1935ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1937d6ab1dc0SHong Zhang } 19389566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19399566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 19409566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 19419566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 19429566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 19439566063dSJacob Faibussowitsch PetscCall(PetscFree(sstatus)); 19449566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1945d6ab1dc0SHong Zhang 1946d6ab1dc0SHong Zhang /* compute the local portion of C (mpi mat) */ 1947d6ab1dc0SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 19489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pn + 1, &bi)); 1949d6ab1dc0SHong Zhang bi[0] = 0; 1950d6ab1dc0SHong Zhang 1951d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(P) + nnz(AP)) */ 1952f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am]))); 19539566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1954d6ab1dc0SHong Zhang current_space = free_space; 1955d6ab1dc0SHong Zhang 19569566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1957d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1958d6ab1dc0SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1959d6ab1dc0SHong Zhang nrows = *buf_ri_k[k]; 1960d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 19612d4ee042Sprj- nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure */ 1962d6ab1dc0SHong Zhang } 1963d6ab1dc0SHong Zhang 19649566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1965d0609cedSBarry Smith MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz); 1966d6ab1dc0SHong Zhang rmax = 0; 1967d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 1968d6ab1dc0SHong Zhang /* add pdt[i,:]*AP into lnk */ 1969d6ab1dc0SHong Zhang pnz = pdti[i + 1] - pdti[i]; 1970d6ab1dc0SHong Zhang ptJ = pdtj + pdti[i]; 1971d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1972d6ab1dc0SHong Zhang row = ptJ[j]; /* row of AP == col of Pt */ 1973d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1974d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1975d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 19769566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1977d6ab1dc0SHong Zhang } 1978d6ab1dc0SHong Zhang 1979d6ab1dc0SHong Zhang /* add received col data into lnk */ 1980d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1981d6ab1dc0SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1982d6ab1dc0SHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1983d6ab1dc0SHong Zhang Jptr = buf_rj[k] + *nextci[k]; 19849566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk)); 19859371c9d4SSatish Balay nextrow[k]++; 19869371c9d4SSatish Balay nextci[k]++; 1987d6ab1dc0SHong Zhang } 1988d6ab1dc0SHong Zhang } 19898c78258cSHong Zhang 19908c78258cSHong Zhang /* add missing diagonal entry */ 19918c78258cSHong Zhang if (C->force_diagonals) { 19928c78258cSHong Zhang k = i + owners[rank]; /* column index */ 19939566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk)); 19948c78258cSHong Zhang } 19958c78258cSHong Zhang 1996d6ab1dc0SHong Zhang nnz = lnk[0]; 1997d6ab1dc0SHong Zhang 1998d6ab1dc0SHong Zhang /* if free space is not available, make more free space */ 1999d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 20009566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 2001d6ab1dc0SHong Zhang nspacedouble++; 2002d6ab1dc0SHong Zhang } 2003d6ab1dc0SHong Zhang /* copy data into free space, then initialize lnk */ 20049566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 20059566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz)); 20062205254eSKarl Rupp 2007d6ab1dc0SHong Zhang current_space->array += nnz; 2008d6ab1dc0SHong Zhang current_space->local_used += nnz; 2009d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 20102205254eSKarl Rupp 2011d6ab1dc0SHong Zhang bi[i + 1] = bi[i] + nnz; 2012d6ab1dc0SHong Zhang if (nnz > rmax) rmax = nnz; 2013d6ab1dc0SHong Zhang } 20149566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 2015d6ab1dc0SHong Zhang 201684648c2dSPierre Jolivet PetscCall(PetscMalloc1(bi[pn], &bj)); 20179566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 2018118727c9SMark F. Adams afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1); 2019d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 20209566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 2021eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 20229566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 20239566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 2024d6ab1dc0SHong Zhang 20254222ddf1SHong Zhang /* create symbolic parallel matrix C - why cannot be assembled in Numeric part */ 20269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE)); 202758b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs)); 20289566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 20299566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 20309566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 2031d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 20329566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(C, 1)); 20339566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2034d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 2035d6ab1dc0SHong Zhang row = i + rstart; 2036d6ab1dc0SHong Zhang nnz = bi[i + 1] - bi[i]; 2037d6ab1dc0SHong Zhang Jptr = bj + bi[i]; 20389566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES)); 2039d6ab1dc0SHong Zhang } 20409566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20419566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20429566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2043d6ab1dc0SHong Zhang merge->bi = bi; 2044d6ab1dc0SHong Zhang merge->bj = bj; 2045d6ab1dc0SHong Zhang merge->coi = coi; 2046d6ab1dc0SHong Zhang merge->coj = coj; 2047d6ab1dc0SHong Zhang merge->buf_ri = buf_ri; 2048d6ab1dc0SHong Zhang merge->buf_rj = buf_rj; 2049d6ab1dc0SHong Zhang merge->owners_co = owners_co; 2050d6ab1dc0SHong Zhang 20514222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 20521cdffd5eSHong Zhang C->product->data = ap; 20536718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 20541cdffd5eSHong Zhang ap->merge = merge; 2055a560ef98SHong Zhang 20564222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ; 2057f96d37fcSHong Zhang 2058f96d37fcSHong Zhang #if defined(PETSC_USE_INFO) 2059f96d37fcSHong Zhang if (bi[pn] != 0) { 20609566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 20619566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill)); 2062f96d37fcSHong Zhang } else { 20639566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 2064f96d37fcSHong Zhang } 2065f96d37fcSHong Zhang #endif 20663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2067f96d37fcSHong Zhang } 20684222ddf1SHong Zhang 2069d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C) 2070d71ae5a4SJacob Faibussowitsch { 20714222ddf1SHong Zhang Mat_Product *product = C->product; 20724222ddf1SHong Zhang Mat A = product->A, B = product->B; 20734222ddf1SHong Zhang PetscReal fill = product->fill; 20744222ddf1SHong Zhang PetscBool flg; 20754222ddf1SHong Zhang 20764222ddf1SHong Zhang PetscFunctionBegin; 20774222ddf1SHong Zhang /* scalable */ 20789566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "scalable", &flg)); 20794222ddf1SHong Zhang if (flg) { 20809566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 20814222ddf1SHong Zhang goto next; 20824222ddf1SHong Zhang } 20834222ddf1SHong Zhang 20844222ddf1SHong Zhang /* nonscalable */ 20859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg)); 20864222ddf1SHong Zhang if (flg) { 20879566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 20884222ddf1SHong Zhang goto next; 20894222ddf1SHong Zhang } 20904222ddf1SHong Zhang 20914222ddf1SHong Zhang /* matmatmult */ 20929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 20934222ddf1SHong Zhang if (flg) { 20944222ddf1SHong Zhang Mat At; 20954222ddf1SHong Zhang Mat_APMPI *ptap; 20964222ddf1SHong Zhang 20979566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 20989566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C)); 20996718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 21004222ddf1SHong Zhang if (ptap) { 21014222ddf1SHong Zhang ptap->Pt = At; 21026718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 21034222ddf1SHong Zhang } 21044222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult; 21054222ddf1SHong Zhang goto next; 21064222ddf1SHong Zhang } 21074222ddf1SHong Zhang 21084e84afc0SStefano Zampini /* backend general code */ 21099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "backend", &flg)); 21104e84afc0SStefano Zampini if (flg) { 21119566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 21123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21134e84afc0SStefano Zampini } 21144e84afc0SStefano Zampini 21154222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported"); 21164222ddf1SHong Zhang 21174222ddf1SHong Zhang next: 21184222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 21193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21204222ddf1SHong Zhang } 21214222ddf1SHong Zhang 21224222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */ 2123d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C) 2124d71ae5a4SJacob Faibussowitsch { 21254222ddf1SHong Zhang Mat_Product *product = C->product; 21264222ddf1SHong Zhang Mat A = product->A, B = product->B; 21274222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 21284e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"}; 21294e84afc0SStefano Zampini PetscInt nalg = 5; 21304222ddf1SHong Zhang #else 21319371c9d4SSatish Balay const char *algTypes[4] = { 21329371c9d4SSatish Balay "scalable", 21339371c9d4SSatish Balay "nonscalable", 21349371c9d4SSatish Balay "seqmpi", 21359371c9d4SSatish Balay "backend", 21369371c9d4SSatish Balay }; 21374e84afc0SStefano Zampini PetscInt nalg = 4; 21384222ddf1SHong Zhang #endif 21394222ddf1SHong Zhang PetscInt alg = 1; /* set nonscalable algorithm as default */ 21404222ddf1SHong Zhang PetscBool flg; 21414222ddf1SHong Zhang MPI_Comm comm; 21424222ddf1SHong Zhang 21434222ddf1SHong Zhang PetscFunctionBegin; 21449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21454222ddf1SHong Zhang 21464222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 21479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 21484222ddf1SHong Zhang if (flg) { 2149835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21504222ddf1SHong Zhang 21514222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 21524222ddf1SHong Zhang if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 21534222ddf1SHong Zhang MatInfo Ainfo, Binfo; 21544222ddf1SHong Zhang PetscInt nz_local; 21554222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 21564222ddf1SHong Zhang 21579566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 21589566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 21594222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 21604222ddf1SHong Zhang 21614222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 21625440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 21634222ddf1SHong Zhang 21644222ddf1SHong Zhang if (alg_scalable) { 21654222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2166835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21679566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 21684222ddf1SHong Zhang } 21694222ddf1SHong Zhang } 21704222ddf1SHong Zhang } 21714222ddf1SHong Zhang 21724222ddf1SHong Zhang /* Get runtime option */ 21734222ddf1SHong Zhang if (product->api_user) { 2174d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 21759566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2176d0609cedSBarry Smith PetscOptionsEnd(); 21774222ddf1SHong Zhang } else { 2178d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 21799566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2180d0609cedSBarry Smith PetscOptionsEnd(); 21814222ddf1SHong Zhang } 2182835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21834222ddf1SHong Zhang 21844222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ; 21853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21864222ddf1SHong Zhang } 21874222ddf1SHong Zhang 2188d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C) 2189d71ae5a4SJacob Faibussowitsch { 21908a9c020eSBarry Smith PetscFunctionBegin; 21918a9c020eSBarry Smith PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 21928a9c020eSBarry Smith C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ; 21933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21948a9c020eSBarry Smith } 21958a9c020eSBarry Smith 21964222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */ 2197d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C) 2198d71ae5a4SJacob Faibussowitsch { 21994222ddf1SHong Zhang Mat_Product *product = C->product; 22004222ddf1SHong Zhang Mat A = product->A, B = product->B; 22014e84afc0SStefano Zampini const char *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"}; 22024e84afc0SStefano Zampini PetscInt nalg = 4; 22034222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22044222ddf1SHong Zhang PetscBool flg; 22054222ddf1SHong Zhang MPI_Comm comm; 22064222ddf1SHong Zhang 22074222ddf1SHong Zhang PetscFunctionBegin; 22084222ddf1SHong Zhang /* Check matrix local sizes */ 22099566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22109371c9d4SSatish Balay PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22119371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 22124222ddf1SHong Zhang 22134222ddf1SHong Zhang /* Set default algorithm */ 22149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2215835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22164222ddf1SHong Zhang 22174222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22184222ddf1SHong Zhang if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 22194222ddf1SHong Zhang MatInfo Ainfo, Binfo; 22204222ddf1SHong Zhang PetscInt nz_local; 22214222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22224222ddf1SHong Zhang 22239566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22249566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 22254222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 22264222ddf1SHong Zhang 22274222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22285440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 22294222ddf1SHong Zhang 22304222ddf1SHong Zhang if (alg_scalable) { 22314222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2232835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22339566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 22344222ddf1SHong Zhang } 22354222ddf1SHong Zhang } 22364222ddf1SHong Zhang 22374222ddf1SHong Zhang /* Get runtime option */ 22384222ddf1SHong Zhang if (product->api_user) { 2239d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 22409566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2241d0609cedSBarry Smith PetscOptionsEnd(); 22424222ddf1SHong Zhang } else { 2243d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 22449566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2245d0609cedSBarry Smith PetscOptionsEnd(); 22464222ddf1SHong Zhang } 2247835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22484222ddf1SHong Zhang 22494222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ; 22503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22514222ddf1SHong Zhang } 22524222ddf1SHong Zhang 2253d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C) 2254d71ae5a4SJacob Faibussowitsch { 22554222ddf1SHong Zhang Mat_Product *product = C->product; 22564222ddf1SHong Zhang Mat A = product->A, P = product->B; 22574222ddf1SHong Zhang MPI_Comm comm; 22584222ddf1SHong Zhang PetscBool flg; 22594222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22604222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 22614e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"}; 22624222ddf1SHong Zhang PetscInt nalg = 5; 22634e84afc0SStefano Zampini #else 22644e84afc0SStefano Zampini const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"}; 22654e84afc0SStefano Zampini PetscInt nalg = 6; 22664222ddf1SHong Zhang #endif 22674222ddf1SHong Zhang PetscInt pN = P->cmap->N; 22684222ddf1SHong Zhang 22694222ddf1SHong Zhang PetscFunctionBegin; 22704222ddf1SHong Zhang /* Check matrix local sizes */ 22719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22729371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22739371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend); 22749371c9d4SSatish Balay PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22759371c9d4SSatish Balay A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend); 22764222ddf1SHong Zhang 22774222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 22789566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 22794222ddf1SHong Zhang if (flg) { 2280835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22814222ddf1SHong Zhang 22824222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22834222ddf1SHong Zhang if (pN > 100000) { 22844222ddf1SHong Zhang MatInfo Ainfo, Pinfo; 22854222ddf1SHong Zhang PetscInt nz_local; 22864222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22874222ddf1SHong Zhang 22889566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo)); 22904222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated); 22914222ddf1SHong Zhang 22924222ddf1SHong Zhang if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22935440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 22944222ddf1SHong Zhang 22954222ddf1SHong Zhang if (alg_scalable) { 22964222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2297835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22984222ddf1SHong Zhang } 22994222ddf1SHong Zhang } 23004222ddf1SHong Zhang } 23014222ddf1SHong Zhang 23024222ddf1SHong Zhang /* Get runtime option */ 23034222ddf1SHong Zhang if (product->api_user) { 2304d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 23059566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2306d0609cedSBarry Smith PetscOptionsEnd(); 23074222ddf1SHong Zhang } else { 2308d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 23099566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2310d0609cedSBarry Smith PetscOptionsEnd(); 23114222ddf1SHong Zhang } 2312835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23134222ddf1SHong Zhang 23144222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ; 23153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23164222ddf1SHong Zhang } 23174222ddf1SHong Zhang 2318d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C) 2319d71ae5a4SJacob Faibussowitsch { 23204222ddf1SHong Zhang Mat_Product *product = C->product; 23214222ddf1SHong Zhang Mat A = product->A, R = product->B; 23224222ddf1SHong Zhang 23234222ddf1SHong Zhang PetscFunctionBegin; 23244222ddf1SHong Zhang /* Check matrix local sizes */ 23259371c9d4SSatish Balay PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n, 23269371c9d4SSatish Balay A->rmap->n, R->rmap->n, R->cmap->n); 23274222ddf1SHong Zhang 23284222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ; 23293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23304222ddf1SHong Zhang } 23314222ddf1SHong Zhang 23324222ddf1SHong Zhang /* 23334222ddf1SHong Zhang Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm 23344222ddf1SHong Zhang */ 2335d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C) 2336d71ae5a4SJacob Faibussowitsch { 23374222ddf1SHong Zhang Mat_Product *product = C->product; 23384222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23394222ddf1SHong Zhang PetscInt alg = 1; /* default algorithm */ 23404222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "nonscalable", "seqmpi"}; 23414222ddf1SHong Zhang PetscInt nalg = 3; 23424222ddf1SHong Zhang 23434222ddf1SHong Zhang PetscFunctionBegin; 23444222ddf1SHong Zhang /* Set default algorithm */ 23459566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2346835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23474222ddf1SHong Zhang 23484222ddf1SHong Zhang /* Get runtime option */ 23494222ddf1SHong Zhang if (product->api_user) { 2350d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 23519566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2352d0609cedSBarry Smith PetscOptionsEnd(); 23534222ddf1SHong Zhang } else { 2354d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 23559566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2356d0609cedSBarry Smith PetscOptionsEnd(); 23574222ddf1SHong Zhang } 2358835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23594222ddf1SHong Zhang 23604222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ; 23614222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 23623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23634222ddf1SHong Zhang } 23644222ddf1SHong Zhang 2365d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C) 2366d71ae5a4SJacob Faibussowitsch { 23674222ddf1SHong Zhang Mat_Product *product = C->product; 23684222ddf1SHong Zhang 23694222ddf1SHong Zhang PetscFunctionBegin; 23704222ddf1SHong Zhang switch (product->type) { 2371d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2372d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 2373d71ae5a4SJacob Faibussowitsch break; 2374d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2375d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C)); 2376d71ae5a4SJacob Faibussowitsch break; 2377d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2378d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C)); 2379d71ae5a4SJacob Faibussowitsch break; 2380d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 2381d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C)); 2382d71ae5a4SJacob Faibussowitsch break; 2383d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt: 2384d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C)); 2385d71ae5a4SJacob Faibussowitsch break; 2386d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 2387d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C)); 2388d71ae5a4SJacob Faibussowitsch break; 2389d71ae5a4SJacob Faibussowitsch default: 2390d71ae5a4SJacob Faibussowitsch break; 23914222ddf1SHong Zhang } 23923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23934222ddf1SHong Zhang } 2394