xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision 99aa8e072276db95456e154c852d5b07033be0d8)
12499ec78SHong Zhang /*
22499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
32499ec78SHong Zhang           C = A * B
42499ec78SHong Zhang */
5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
8c6db04a5SJed Brown #include <petscbt.h>
9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
10af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
121634b032SHong Zhang 
135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
155e5acdf2Sstefano_zampini #endif
165e5acdf2Sstefano_zampini 
17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
18d71ae5a4SJacob Faibussowitsch {
198a9c020eSBarry Smith   Mat_Product *product = C->product;
208a9c020eSBarry Smith   Mat          B       = product->B;
218a9c020eSBarry Smith 
228a9c020eSBarry Smith   PetscFunctionBegin;
238a9c020eSBarry Smith   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
248a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
258a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278a9c020eSBarry Smith }
288a9c020eSBarry Smith 
29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
30d71ae5a4SJacob Faibussowitsch {
314222ddf1SHong Zhang   Mat_Product        *product = C->product;
324222ddf1SHong Zhang   Mat                 A = product->A, B = product->B;
334222ddf1SHong Zhang   MatProductAlgorithm alg  = product->alg;
344222ddf1SHong Zhang   PetscReal           fill = product->fill;
355e68f438SHong Zhang   PetscBool           flg;
362499ec78SHong Zhang 
372499ec78SHong Zhang   PetscFunctionBegin;
384222ddf1SHong Zhang   /* scalable */
399566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
404222ddf1SHong Zhang   if (flg) {
419566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
430fc8cf34SHong Zhang   }
447d0a89b7SHong Zhang 
454222ddf1SHong Zhang   /* nonscalable */
469566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
474222ddf1SHong Zhang   if (flg) {
489566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
504222ddf1SHong Zhang   }
514222ddf1SHong Zhang 
524222ddf1SHong Zhang   /* seqmpi */
539566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
544222ddf1SHong Zhang   if (flg) {
559566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
574222ddf1SHong Zhang   }
584222ddf1SHong Zhang 
594e84afc0SStefano Zampini   /* backend general code */
609566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "backend", &flg));
614e84afc0SStefano Zampini   if (flg) {
629566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
644e84afc0SStefano Zampini   }
654e84afc0SStefano Zampini 
664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
684222ddf1SHong Zhang   if (flg) {
699566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
714222ddf1SHong Zhang   }
724222ddf1SHong Zhang #endif
734222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
742499ec78SHong Zhang }
752499ec78SHong Zhang 
76d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
77d71ae5a4SJacob Faibussowitsch {
786718818eSStefano Zampini   Mat_APMPI *ptap = (Mat_APMPI *)data;
79598bc09dSHong Zhang 
80598bc09dSHong Zhang   PetscFunctionBegin;
819566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
829566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
869566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91598bc09dSHong Zhang }
92598bc09dSHong Zhang 
93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C)
94d71ae5a4SJacob Faibussowitsch {
954ae0847bSHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
96f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
97f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
98*99aa8e07SJunchao Zhang   PetscScalar       *cda, *coa;
99598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
1009ce11a7cSHong Zhang   PetscScalar       *apa, *ca;
101c12557a1SHong Zhang   PetscInt           cm = C->rmap->n;
1026718818eSStefano Zampini   Mat_APMPI         *ptap;
103c12557a1SHong Zhang   PetscInt          *api, *apj, *apJ, i, k;
10429825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
105598bc09dSHong Zhang   PetscInt           cdnz, conz, k0, k1;
106*99aa8e07SJunchao Zhang   const PetscScalar *dummy1, *dummy2, *dummy3, *dummy4;
1079467f45fSHong Zhang   MPI_Comm           comm;
1089467f45fSHong Zhang   PetscMPIInt        size;
109598bc09dSHong Zhang 
110598bc09dSHong Zhang   PetscFunctionBegin;
1116718818eSStefano Zampini   MatCheckProduct(C, 3);
1126718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
11328b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1149566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
116aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11780da8df7SHong Zhang 
11865e4b4d4SStefano Zampini   /* flag CPU mask for C */
11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12065e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12165e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini #endif
12465e4b4d4SStefano Zampini 
125a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
126a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1279566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
129598bc09dSHong Zhang 
130598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
131598bc09dSHong Zhang   /* get data from symbolic products */
132f4f49eeaSPierre Jolivet   p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
133c12557a1SHong Zhang   p_oth = NULL;
134f4f49eeaSPierre Jolivet   if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
135598bc09dSHong Zhang 
136598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
137598bc09dSHong Zhang   apa = ptap->apa;
138598bc09dSHong Zhang 
13929825010SHong Zhang   api = ptap->api;
14029825010SHong Zhang   apj = ptap->apj;
141ce496241SStefano Zampini   /* trigger copy to CPU */
142*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy1));
143*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy2));
144*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayRead(ptap->P_loc, &dummy3));
145*99aa8e07SJunchao Zhang   if (ptap->P_oth) PetscCall(MatSeqAIJGetArrayRead(ptap->P_oth, &dummy4));
146*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayWrite(c->A, &cda));
147*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJGetArrayWrite(c->B, &coa));
148598bc09dSHong Zhang   for (i = 0; i < cm; i++) {
149c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
150e497d3c8SHong Zhang     AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
151598bc09dSHong Zhang 
152598bc09dSHong Zhang     /* set values in C */
153216f1e5cSPierre Jolivet     apJ  = PetscSafePointerPlusOffset(apj, api[i]);
154598bc09dSHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
155598bc09dSHong Zhang     conz = co->i[i + 1] - co->i[i];
156598bc09dSHong Zhang 
157910cf402Sprj-     /* 1st off-diagonal part of C */
1588e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
159598bc09dSHong Zhang     k  = 0;
160598bc09dSHong Zhang     for (k0 = 0; k0 < conz; k0++) {
161598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
162598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1635cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
164598bc09dSHong Zhang     }
165598bc09dSHong Zhang 
166598bc09dSHong Zhang     /* diagonal part of C */
1678e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(cda, cd->i[i]);
168598bc09dSHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
169598bc09dSHong Zhang       ca[k1]        = apa[apJ[k]];
1705cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
171598bc09dSHong Zhang     }
172598bc09dSHong Zhang 
173910cf402Sprj-     /* 2nd off-diagonal part of C */
1748e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
175598bc09dSHong Zhang     for (; k0 < conz; k0++) {
176598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1775cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
178598bc09dSHong Zhang     }
179598bc09dSHong Zhang   }
180*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy1));
181*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy2));
182*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_loc, &dummy3));
183*99aa8e07SJunchao Zhang   if (ptap->P_oth) PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_oth, &dummy4));
184*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayWrite(c->A, &cda));
185*99aa8e07SJunchao Zhang   PetscCall(MatSeqAIJRestoreArrayWrite(c->B, &coa));
186*99aa8e07SJunchao Zhang 
1879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
190598bc09dSHong Zhang }
191598bc09dSHong Zhang 
192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C)
193d71ae5a4SJacob Faibussowitsch {
194ce94432eSBarry Smith   MPI_Comm           comm;
1959467f45fSHong Zhang   PetscMPIInt        size;
1963cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1970298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
1986718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
199f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
2007dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
2014ae0847bSHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
202d14fa243SHong Zhang   PetscInt          *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
2035cab4f04SHong Zhang   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
204598bc09dSHong Zhang   PetscBT            lnkbt;
205bfcd1a73SHong Zhang   PetscReal          afill;
206b92f168fSBarry Smith   MatType            mtype;
207598bc09dSHong Zhang 
208598bc09dSHong Zhang   PetscFunctionBegin;
2096718818eSStefano Zampini   MatCheckProduct(C, 4);
21028b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2119566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2139467f45fSHong Zhang 
2143cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
2159566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
216598bc09dSHong Zhang 
217598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2189566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
21919f0e57aSHong Zhang 
220598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2219566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
222598bc09dSHong Zhang 
223f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
2249371c9d4SSatish Balay   pi_loc = p_loc->i;
2259371c9d4SSatish Balay   pj_loc = p_loc->j;
2269467f45fSHong Zhang   if (size > 1) {
227f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
2289371c9d4SSatish Balay     pi_oth = p_oth->i;
2299371c9d4SSatish Balay     pj_oth = p_oth->j;
23020e3dc75SHong Zhang   } else {
23120e3dc75SHong Zhang     p_oth  = NULL;
2329371c9d4SSatish Balay     pi_oth = NULL;
2339371c9d4SSatish Balay     pj_oth = NULL;
2349467f45fSHong Zhang   }
235598bc09dSHong Zhang 
236598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
23784648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
238a1a4e84aSHong Zhang   ptap->api = api;
239598bc09dSHong Zhang   api[0]    = 0;
240598bc09dSHong Zhang 
2415cab4f04SHong Zhang   /* create and initialize a linked list */
2429566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
243598bc09dSHong Zhang 
244bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2459566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
246598bc09dSHong Zhang   current_space = free_space;
247598bc09dSHong Zhang 
248d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
249598bc09dSHong Zhang   for (i = 0; i < am; i++) {
250598bc09dSHong Zhang     /* diagonal portion of A */
251598bc09dSHong Zhang     nzi = adi[i + 1] - adi[i];
252598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
253598bc09dSHong Zhang       row  = *adj++;
254598bc09dSHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
255598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
256598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2579566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
258598bc09dSHong Zhang     }
259598bc09dSHong Zhang     /* off-diagonal portion of A */
260598bc09dSHong Zhang     nzi = aoi[i + 1] - aoi[i];
261598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
262598bc09dSHong Zhang       row  = *aoj++;
263598bc09dSHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
264598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2659566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
266598bc09dSHong Zhang     }
2678c78258cSHong Zhang     /* add possible missing diagonal entry */
2688c78258cSHong Zhang     if (C->force_diagonals) {
2698c78258cSHong Zhang       j = i + rstart; /* column index */
2709566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2718c78258cSHong Zhang     }
272598bc09dSHong Zhang 
273d14fa243SHong Zhang     apnz       = lnk[0];
274598bc09dSHong Zhang     api[i + 1] = api[i] + apnz;
275598bc09dSHong Zhang 
276598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
277598bc09dSHong Zhang     if (current_space->local_remaining < apnz) {
2789566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
279598bc09dSHong Zhang       nspacedouble++;
280598bc09dSHong Zhang     }
281598bc09dSHong Zhang 
282598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2839566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2849566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2852205254eSKarl Rupp 
286598bc09dSHong Zhang     current_space->array += apnz;
287598bc09dSHong Zhang     current_space->local_used += apnz;
288598bc09dSHong Zhang     current_space->local_remaining -= apnz;
289598bc09dSHong Zhang   }
290598bc09dSHong Zhang 
291598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
292598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
29384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
294a1a4e84aSHong Zhang   apj = ptap->apj;
2959566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2969566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
297598bc09dSHong Zhang 
298f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN, &ptap->apa));
300f84c536bSHong Zhang 
3014222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
3029566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
3039566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
304a2f3521dSMark F. Adams 
3059566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
3069566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
3079566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
308d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
30917f75172Sandi selinger 
3109566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
3119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3129566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3139566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
314598bc09dSHong Zhang 
3154222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3164222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
317598bc09dSHong Zhang 
3184222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3196718818eSStefano Zampini   C->product->data    = ptap;
3206718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
321598bc09dSHong Zhang 
322bfcd1a73SHong Zhang   /* set MatInfo */
323118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
324bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3254222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3264222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3274222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
328bfcd1a73SHong Zhang 
329bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
330bfcd1a73SHong Zhang   if (api[am]) {
3319566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3329566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
333bfcd1a73SHong Zhang   } else {
3349566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
335bfcd1a73SHong Zhang   }
336bfcd1a73SHong Zhang #endif
3373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
338598bc09dSHong Zhang }
339598bc09dSHong Zhang 
3406718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3416718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3426718818eSStefano Zampini 
343d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
344d71ae5a4SJacob Faibussowitsch {
3454222ddf1SHong Zhang   Mat_Product *product = C->product;
3464222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3479123193aSHong Zhang 
3489123193aSHong Zhang   PetscFunctionBegin;
3494222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
35098921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3514222ddf1SHong Zhang 
3524222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3534222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3559123193aSHong Zhang }
3562ef1f0ffSBarry Smith 
357d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
358d71ae5a4SJacob Faibussowitsch {
3594222ddf1SHong Zhang   Mat_Product *product = C->product;
3604222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3614222ddf1SHong Zhang 
3624222ddf1SHong Zhang   PetscFunctionBegin;
3634222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
36498921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3654222ddf1SHong Zhang 
3664222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3674222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3694222ddf1SHong Zhang }
3704222ddf1SHong Zhang 
371d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
372d71ae5a4SJacob Faibussowitsch {
3734222ddf1SHong Zhang   Mat_Product *product = C->product;
3744222ddf1SHong Zhang 
3754222ddf1SHong Zhang   PetscFunctionBegin;
3764222ddf1SHong Zhang   switch (product->type) {
377d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
378d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
379d71ae5a4SJacob Faibussowitsch     break;
380d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
381d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
382d71ae5a4SJacob Faibussowitsch     break;
383d71ae5a4SJacob Faibussowitsch   default:
384d71ae5a4SJacob Faibussowitsch     break;
3854222ddf1SHong Zhang   }
3863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3874222ddf1SHong Zhang }
3889123193aSHong Zhang 
3894324174eSBarry Smith typedef struct {
3905ea7661aSPierre Jolivet   Mat           workB, workB1;
3914324174eSBarry Smith   MPI_Request  *rwaits, *swaits;
39287753ddeSHong Zhang   PetscInt      nsends, nrecvs;
39387753ddeSHong Zhang   MPI_Datatype *stype, *rtype;
3946718818eSStefano Zampini   PetscInt      blda;
3954324174eSBarry Smith } MPIAIJ_MPIDense;
3964324174eSBarry Smith 
39766976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
398d71ae5a4SJacob Faibussowitsch {
3994324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx;
40087753ddeSHong Zhang   PetscInt         i;
4014324174eSBarry Smith 
4024324174eSBarry Smith   PetscFunctionBegin;
4039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
4049566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
40548a46eb9SPierre Jolivet   for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
40648a46eb9SPierre Jolivet   for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
4079566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
4089566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4104324174eSBarry Smith }
4114324174eSBarry Smith 
412d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
413d71ae5a4SJacob Faibussowitsch {
414f32d5d43SBarry Smith   Mat_MPIAIJ      *aij = (Mat_MPIAIJ *)A->data;
4156497c311SBarry Smith   PetscInt         nz  = aij->B->cmap->n, blda, m, M, n, N;
4164324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4174324174eSBarry Smith   VecScatter       ctx = aij->Mvctx;
4186497c311SBarry Smith   PetscInt         Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb;
41987753ddeSHong Zhang   MPI_Comm         comm;
42087753ddeSHong Zhang   MPI_Datatype     type1, *stype, *rtype;
42187753ddeSHong Zhang   const PetscInt  *sindices, *sstarts, *rstarts;
4226497c311SBarry Smith   PetscMPIInt     *disp, nsends, nrecvs, nrows_to, nrows_from;
4236718818eSStefano Zampini   PetscBool        cisdense;
4249123193aSHong Zhang 
4259123193aSHong Zhang   PetscFunctionBegin;
4266718818eSStefano Zampini   MatCheckProduct(C, 4);
42728b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4289566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4299566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
43048a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4319566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C, &m, &n));
4329566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C, &M, &N));
43348a46eb9SPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4349566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
4359566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4369566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
4379566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4384324174eSBarry Smith 
4399566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4409566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
44187753ddeSHong Zhang 
44287753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
44387753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
44487753ddeSHong Zhang   if (nz) {
44587753ddeSHong Zhang     Bbn1 = 2 * Am * BN / nz;
446da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
44787753ddeSHong Zhang   } else Bbn1 = BN;
44887753ddeSHong Zhang 
44958b7e2c1SStefano Zampini   bs   = B->cmap->bs;
45087753ddeSHong Zhang   Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
45187753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
452462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
45387753ddeSHong Zhang 
45487753ddeSHong Zhang   /* Enable runtime option for Bbn */
455d0609cedSBarry Smith   PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat");
4569566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL));
457d0609cedSBarry Smith   PetscOptionsEnd();
4586718818eSStefano Zampini   Bbn = PetscMin(Bbn, BN);
45987753ddeSHong Zhang 
4606718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4615ea7661aSPierre Jolivet     numBb = BN / Bbn;
4625ea7661aSPierre Jolivet     Bbn1  = BN - numBb * Bbn;
4635ea7661aSPierre Jolivet   } else numBb = 0;
46487753ddeSHong Zhang 
4655ea7661aSPierre Jolivet   if (numBb) {
4669566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4675ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4689566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
46987753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4709566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4715ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
47287753ddeSHong Zhang   }
47387753ddeSHong Zhang 
47487753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4759566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
47687753ddeSHong Zhang 
47787753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
47987753ddeSHong Zhang   contents->stype  = stype;
48087753ddeSHong Zhang   contents->nsends = nsends;
48187753ddeSHong Zhang 
48287753ddeSHong Zhang   contents->rtype  = rtype;
48387753ddeSHong Zhang   contents->nrecvs = nrecvs;
4846718818eSStefano Zampini   contents->blda   = blda;
48587753ddeSHong Zhang 
4869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm + 1, &disp));
4876497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) {
4886497c311SBarry Smith     PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to));
4896497c311SBarry Smith     for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */
4909566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4919566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
49487753ddeSHong Zhang   }
49587753ddeSHong Zhang 
4966497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) {
49787753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
4986497c311SBarry Smith     PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from));
49987753ddeSHong Zhang     disp[0] = 0;
5009566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
5019566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
5029566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
5039566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
50487753ddeSHong Zhang   }
50587753ddeSHong Zhang 
5069566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
5079566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
5089566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
5099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
5109566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
5119566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
5126718818eSStefano Zampini 
5136718818eSStefano Zampini   C->product->data       = contents;
5146718818eSStefano Zampini   C->product->destroy    = MatMPIAIJ_MPIDenseDestroy;
5154222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5163ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5179123193aSHong Zhang }
5189123193aSHong Zhang 
51993aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
5209612af27SStefano Zampini 
521f32d5d43SBarry Smith /*
5222636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5232636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
52487753ddeSHong Zhang 
5259612af27SStefano Zampini     Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
526f32d5d43SBarry Smith */
5279612af27SStefano Zampini 
52866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB)
529d71ae5a4SJacob Faibussowitsch {
530f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
5311683a169SBarry Smith   const PetscScalar *b;
53287753ddeSHong Zhang   PetscScalar       *rvalues;
533f32d5d43SBarry Smith   VecScatter         ctx = aij->Mvctx;
53487753ddeSHong Zhang   const PetscInt    *sindices, *sstarts, *rstarts;
5353515ee7fSJunchao Zhang   const PetscMPIInt *sprocs, *rprocs;
5366497c311SBarry Smith   PetscMPIInt        nsends, nrecvs;
537f32d5d43SBarry Smith   MPI_Request       *swaits, *rwaits;
538ce94432eSBarry Smith   MPI_Comm           comm;
5396497c311SBarry Smith   PetscMPIInt        tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi;
5404324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5414324174eSBarry Smith   Mat                workB;
54287753ddeSHong Zhang   MPI_Datatype      *stype, *rtype;
5436718818eSStefano Zampini   PetscInt           blda;
544f32d5d43SBarry Smith 
545f32d5d43SBarry Smith   PetscFunctionBegin;
5466718818eSStefano Zampini   MatCheckProduct(C, 4);
54728b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5486497c311SBarry Smith   PetscCall(PetscMPIIntCast(B->cmap->N, &ncols));
5496497c311SBarry Smith   PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows));
5506718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
5519566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5529566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5539566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5549566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
555b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
556b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
55708401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5583515ee7fSJunchao Zhang   swaits = contents->swaits;
5593515ee7fSJunchao Zhang   rwaits = contents->rwaits;
560f32d5d43SBarry Smith 
5619566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &b));
5629566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
56308401ef6SPierre Jolivet   PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5649566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB, &rvalues));
565f32d5d43SBarry Smith 
56687753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5679566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
56887753ddeSHong Zhang   rtype = contents->rtype;
5696497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
570f32d5d43SBarry Smith 
57187753ddeSHong Zhang   stype = contents->stype;
5726497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5732636ff26SBarry Smith 
5749566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5759566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
576f32d5d43SBarry Smith 
5779566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5789566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5799566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &b));
5809566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB, &rvalues));
5813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
58287753ddeSHong Zhang }
583f32d5d43SBarry Smith 
584d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C)
585d71ae5a4SJacob Faibussowitsch {
586f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ *)A->data;
587f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense *)B->data;
588f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense *)C->data;
589f32d5d43SBarry Smith   Mat              workB;
59087753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5919123193aSHong Zhang 
5929123193aSHong Zhang   PetscFunctionBegin;
5936718818eSStefano Zampini   MatCheckProduct(C, 3);
59428b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5956718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
596f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5975ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
598fb842aefSJose E. Roman   PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_CURRENT, &cdense->A));
5995ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
60087753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
6019566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
602f32d5d43SBarry Smith 
603f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
6049566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
60587753ddeSHong Zhang   } else {
6065ea7661aSPierre Jolivet     Mat       Bb, Cb;
6076497c311SBarry Smith     PetscInt  BN = B->cmap->N, n = contents->workB->cmap->n;
608664c1e85SStefano Zampini     PetscBool ccpu;
60987753ddeSHong Zhang 
61008401ef6SPierre Jolivet     PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
611664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
612664c1e85SStefano Zampini        when getting and restoring the submatrix
613664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6149566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C, &ccpu));
6159566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, PETSC_TRUE));
6166497c311SBarry Smith     for (PetscInt i = 0; i < BN; i += n) {
617a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
618a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
61987753ddeSHong Zhang 
6205ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6219566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6225ea7661aSPierre Jolivet 
6235ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6245ea7661aSPierre Jolivet       cdense = (Mat_MPIDense *)Cb->data;
6259566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6269566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6279566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
62887753ddeSHong Zhang     }
6299566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, ccpu));
63087753ddeSHong Zhang   }
6313ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6329123193aSHong Zhang }
633cf1a0672SHong Zhang 
634d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C)
635d71ae5a4SJacob Faibussowitsch {
636cf1a0672SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
637f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
638f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
639cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj, *aoi = ao->i, *aoj;
640cf1a0672SHong Zhang   PetscScalar       *ada, *aoa, *cda = cd->a, *coa = co->a;
641cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
642cf1a0672SHong Zhang   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
64329825010SHong Zhang   PetscScalar       *pa_loc, *pa_oth, *pa, valtmp, *ca;
64429825010SHong Zhang   PetscInt           cm = C->rmap->n, anz, pnz;
6456718818eSStefano Zampini   Mat_APMPI         *ptap;
64680da8df7SHong Zhang   PetscScalar       *apa_sparse;
647ce496241SStefano Zampini   const PetscScalar *dummy;
648cf1a0672SHong Zhang   PetscInt          *api, *apj, *apJ, i, j, k, row;
64929825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
65029825010SHong Zhang   PetscInt           cdnz, conz, k0, k1, nextp;
651a7c7454dSHong Zhang   MPI_Comm           comm;
652a7c7454dSHong Zhang   PetscMPIInt        size;
6531634b032SHong Zhang 
6541634b032SHong Zhang   PetscFunctionBegin;
6556718818eSStefano Zampini   MatCheckProduct(C, 3);
6566718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
65728b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6589566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
660aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
661a7c7454dSHong Zhang 
66265e4b4d4SStefano Zampini   /* flag CPU mask for C */
66365e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
66465e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
66565e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
66665e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
66765e4b4d4SStefano Zampini #endif
66880da8df7SHong Zhang   apa_sparse = ptap->apa;
66980da8df7SHong Zhang 
670cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
671cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6729566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6739566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
674cf1a0672SHong Zhang 
675cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
676cf1a0672SHong Zhang   /* get data from symbolic products */
677f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
6789371c9d4SSatish Balay   pi_loc = p_loc->i;
6799371c9d4SSatish Balay   pj_loc = p_loc->j;
6809371c9d4SSatish Balay   pa_loc = p_loc->a;
681a7c7454dSHong Zhang   if (size > 1) {
682f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
6839371c9d4SSatish Balay     pi_oth = p_oth->i;
6849371c9d4SSatish Balay     pj_oth = p_oth->j;
6859371c9d4SSatish Balay     pa_oth = p_oth->a;
68620e3dc75SHong Zhang   } else {
6879371c9d4SSatish Balay     p_oth  = NULL;
6889371c9d4SSatish Balay     pi_oth = NULL;
6899371c9d4SSatish Balay     pj_oth = NULL;
6909371c9d4SSatish Balay     pa_oth = NULL;
691a7c7454dSHong Zhang   }
692cf1a0672SHong Zhang 
693ce496241SStefano Zampini   /* trigger copy to CPU */
6949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
6959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
6969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
6979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
69829825010SHong Zhang   api = ptap->api;
69929825010SHong Zhang   apj = ptap->apj;
700cf1a0672SHong Zhang   for (i = 0; i < cm; i++) {
70129825010SHong Zhang     apJ = apj + api[i];
70229825010SHong Zhang 
703cf1a0672SHong Zhang     /* diagonal portion of A */
704cf1a0672SHong Zhang     anz = adi[i + 1] - adi[i];
705cf1a0672SHong Zhang     adj = ad->j + adi[i];
706cf1a0672SHong Zhang     ada = ad->a + adi[i];
707cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
708cf1a0672SHong Zhang       row = adj[j];
709cf1a0672SHong Zhang       pnz = pi_loc[row + 1] - pi_loc[row];
710cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
711cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
71229825010SHong Zhang       /* perform sparse axpy */
713cf1a0672SHong Zhang       valtmp = ada[j];
71429825010SHong Zhang       nextp  = 0;
71529825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
71629825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
71729825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
71829825010SHong Zhang         }
7191634b032SHong Zhang       }
7209566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
721cf1a0672SHong Zhang     }
7221634b032SHong Zhang 
723cf1a0672SHong Zhang     /* off-diagonal portion of A */
724cf1a0672SHong Zhang     anz = aoi[i + 1] - aoi[i];
7258e3a54c0SPierre Jolivet     aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]);
7268e3a54c0SPierre Jolivet     aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]);
727cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
728cf1a0672SHong Zhang       row = aoj[j];
729cf1a0672SHong Zhang       pnz = pi_oth[row + 1] - pi_oth[row];
730cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
731cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
73229825010SHong Zhang       /* perform sparse axpy */
733cf1a0672SHong Zhang       valtmp = aoa[j];
73429825010SHong Zhang       nextp  = 0;
73529825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
73629825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
73729825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
73829825010SHong Zhang         }
739cf1a0672SHong Zhang       }
7409566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
741cf1a0672SHong Zhang     }
7421634b032SHong Zhang 
743cf1a0672SHong Zhang     /* set values in C */
744cf1a0672SHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
745cf1a0672SHong Zhang     conz = co->i[i + 1] - co->i[i];
7461634b032SHong Zhang 
747910cf402Sprj-     /* 1st off-diagonal part of C */
7488e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
749cf1a0672SHong Zhang     k  = 0;
750cf1a0672SHong Zhang     for (k0 = 0; k0 < conz; k0++) {
751cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
75229825010SHong Zhang       ca[k0]        = apa_sparse[k];
75329825010SHong Zhang       apa_sparse[k] = 0.0;
754cf1a0672SHong Zhang       k++;
755cf1a0672SHong Zhang     }
7561634b032SHong Zhang 
757cf1a0672SHong Zhang     /* diagonal part of C */
758cf1a0672SHong Zhang     ca = cda + cd->i[i];
759cf1a0672SHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
76029825010SHong Zhang       ca[k1]        = apa_sparse[k];
76129825010SHong Zhang       apa_sparse[k] = 0.0;
762cf1a0672SHong Zhang       k++;
763cf1a0672SHong Zhang     }
764cf1a0672SHong Zhang 
765910cf402Sprj-     /* 2nd off-diagonal part of C */
7668e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
767cf1a0672SHong Zhang     for (; k0 < conz; k0++) {
76829825010SHong Zhang       ca[k0]        = apa_sparse[k];
76929825010SHong Zhang       apa_sparse[k] = 0.0;
770cf1a0672SHong Zhang       k++;
771cf1a0672SHong Zhang     }
772cf1a0672SHong Zhang   }
7739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
7753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
776cf1a0672SHong Zhang }
777cf1a0672SHong Zhang 
7780fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C)
780d71ae5a4SJacob Faibussowitsch {
781ce94432eSBarry Smith   MPI_Comm           comm;
782a7c7454dSHong Zhang   PetscMPIInt        size;
7833cdca5ebSHong Zhang   Mat_APMPI         *ptap;
7840298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
7856718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
786f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
7877dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
788cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
7898c78258cSHong Zhang   PetscInt           i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
790e5ab8c0aSKarl Rupp   PetscInt           am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
791cf1a0672SHong Zhang   PetscReal          afill;
792b92f168fSBarry Smith   MatType            mtype;
793cf1a0672SHong Zhang 
794cf1a0672SHong Zhang   PetscFunctionBegin;
7956718818eSStefano Zampini   MatCheckProduct(C, 4);
79628b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
7979566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
7989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
799a7c7454dSHong Zhang 
8003cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
8019566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
802cf1a0672SHong Zhang 
803cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
8049566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
80519f0e57aSHong Zhang 
806cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
8079566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
808cf1a0672SHong Zhang 
809f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
8109371c9d4SSatish Balay   pi_loc = p_loc->i;
8119371c9d4SSatish Balay   pj_loc = p_loc->j;
812a7c7454dSHong Zhang   if (size > 1) {
813f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
8149371c9d4SSatish Balay     pi_oth = p_oth->i;
8159371c9d4SSatish Balay     pj_oth = p_oth->j;
816968382fdSHong Zhang   } else {
81720e3dc75SHong Zhang     p_oth  = NULL;
8189371c9d4SSatish Balay     pi_oth = NULL;
8199371c9d4SSatish Balay     pj_oth = NULL;
820a7c7454dSHong Zhang   }
821cf1a0672SHong Zhang 
822cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
82384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
824cf1a0672SHong Zhang   ptap->api = api;
825cf1a0672SHong Zhang   api[0]    = 0;
826cf1a0672SHong Zhang 
8279566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
828cf1a0672SHong Zhang 
829cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8309566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
831cf1a0672SHong Zhang   current_space = free_space;
832d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
833cf1a0672SHong Zhang   for (i = 0; i < am; i++) {
834cf1a0672SHong Zhang     /* diagonal portion of A */
835cf1a0672SHong Zhang     nzi = adi[i + 1] - adi[i];
836cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
837cf1a0672SHong Zhang       row  = *adj++;
838cf1a0672SHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
839cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8408a210135Sandi selinger       /* Expand list if it is not long enough */
8418328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8428328dd82Sandi selinger         lsize = pnz + apnz_max;
8439566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8448a210135Sandi selinger       }
845cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8469566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8478a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8488a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8498c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
850cf1a0672SHong Zhang     }
851cf1a0672SHong Zhang     /* off-diagonal portion of A */
852cf1a0672SHong Zhang     nzi = aoi[i + 1] - aoi[i];
853cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
854cf1a0672SHong Zhang       row  = *aoj++;
855cf1a0672SHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
856cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8578a210135Sandi selinger       /* Expand list if it is not long enough */
8588328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8598328dd82Sandi selinger         lsize = pnz + apnz_max;
8609566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8618a210135Sandi selinger       }
8628a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8639566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8648a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8658a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8668c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
867cf1a0672SHong Zhang     }
8688c78258cSHong Zhang 
8698c78258cSHong Zhang     /* add missing diagonal entry */
8708c78258cSHong Zhang     if (C->force_diagonals) {
8718c78258cSHong Zhang       j = i + rstart; /* column index */
8729566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8738c78258cSHong Zhang     }
8748c78258cSHong Zhang 
875f84c536bSHong Zhang     apnz       = *lnk;
876cf1a0672SHong Zhang     api[i + 1] = api[i] + apnz;
8778a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
878cf1a0672SHong Zhang 
879cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
880cf1a0672SHong Zhang     if (current_space->local_remaining < apnz) {
8819566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
882cf1a0672SHong Zhang       nspacedouble++;
883cf1a0672SHong Zhang     }
884cf1a0672SHong Zhang 
885cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8869566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
8879566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
8882205254eSKarl Rupp 
889cf1a0672SHong Zhang     current_space->array += apnz;
890cf1a0672SHong Zhang     current_space->local_used += apnz;
891cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
892cf1a0672SHong Zhang   }
893cf1a0672SHong Zhang 
894cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
895cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
89684648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
897cf1a0672SHong Zhang   apj = ptap->apj;
8989566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
8999566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
900cf1a0672SHong Zhang 
9014222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
9029566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
9039566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
9049566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
9059566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
9069566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
907d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
908cf1a0672SHong Zhang 
9094222ddf1SHong Zhang   /* malloc apa for assembly C */
9109566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
91117f75172Sandi selinger 
9129566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
9139566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
9149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
9159566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
916cf1a0672SHong Zhang 
9174222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9184222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
919cf1a0672SHong Zhang 
9204222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9216718818eSStefano Zampini   C->product->data    = ptap;
9226718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
923cf1a0672SHong Zhang 
924cf1a0672SHong Zhang   /* set MatInfo */
925118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
926cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9274222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9284222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9294222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
930cf1a0672SHong Zhang 
931cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
932cf1a0672SHong Zhang   if (api[am]) {
9339566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9349566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
935cf1a0672SHong Zhang   } else {
9369566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
937cf1a0672SHong Zhang   }
938cf1a0672SHong Zhang #endif
9393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9401634b032SHong Zhang }
941f96d37fcSHong Zhang 
942a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
943a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
944a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
945d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out)
946d71ae5a4SJacob Faibussowitsch {
947a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
948a9d7e0ccSandi selinger 
949a9d7e0ccSandi selinger   /* Traverse all three arrays */
950a9d7e0ccSandi selinger   while (i < size1 && j < size2 && k < size3) {
951a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
952a9d7e0ccSandi selinger       out[l++] = in1[i++];
9539371c9d4SSatish Balay     } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
954a9d7e0ccSandi selinger       out[l++] = in2[j++];
9559371c9d4SSatish Balay     } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
956a9d7e0ccSandi selinger       out[l++] = in3[k++];
9579371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
958a9d7e0ccSandi selinger       out[l++] = in1[i];
959a9d7e0ccSandi selinger       i++, j++;
9609371c9d4SSatish Balay     } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
961a9d7e0ccSandi selinger       out[l++] = in1[i];
962a9d7e0ccSandi selinger       i++, k++;
9639371c9d4SSatish Balay     } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
964a9d7e0ccSandi selinger       out[l++] = in2[j];
965a9d7e0ccSandi selinger       k++, j++;
9669371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
967a9d7e0ccSandi selinger       out[l++] = in1[i];
968a9d7e0ccSandi selinger       i++, j++, k++;
969a9d7e0ccSandi selinger     }
970a9d7e0ccSandi selinger   }
971a9d7e0ccSandi selinger 
972a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
973a9d7e0ccSandi selinger   while (i < size1 && j < size2) {
974a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
975a9d7e0ccSandi selinger       out[l++] = in1[i++];
9769371c9d4SSatish Balay     } else if (in1[i] > in2[j]) {
977a9d7e0ccSandi selinger       out[l++] = in2[j++];
9789371c9d4SSatish Balay     } else {
979a9d7e0ccSandi selinger       out[l++] = in1[i];
980a9d7e0ccSandi selinger       i++, j++;
981a9d7e0ccSandi selinger     }
982a9d7e0ccSandi selinger   }
983a9d7e0ccSandi selinger 
984a9d7e0ccSandi selinger   while (i < size1 && k < size3) {
985a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
986a9d7e0ccSandi selinger       out[l++] = in1[i++];
9879371c9d4SSatish Balay     } else if (in1[i] > in3[k]) {
988a9d7e0ccSandi selinger       out[l++] = in3[k++];
9899371c9d4SSatish Balay     } else {
990a9d7e0ccSandi selinger       out[l++] = in1[i];
991a9d7e0ccSandi selinger       i++, k++;
992a9d7e0ccSandi selinger     }
993a9d7e0ccSandi selinger   }
994a9d7e0ccSandi selinger 
995a9d7e0ccSandi selinger   while (k < size3 && j < size2) {
996a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
997a9d7e0ccSandi selinger       out[l++] = in3[k++];
9989371c9d4SSatish Balay     } else if (in3[k] > in2[j]) {
999a9d7e0ccSandi selinger       out[l++] = in2[j++];
10009371c9d4SSatish Balay     } else {
1001a9d7e0ccSandi selinger       out[l++] = in3[k];
1002a9d7e0ccSandi selinger       k++, j++;
1003a9d7e0ccSandi selinger     }
1004a9d7e0ccSandi selinger   }
1005a9d7e0ccSandi selinger 
1006a9d7e0ccSandi selinger   /* Traverse one remaining array */
1007a9d7e0ccSandi selinger   while (i < size1) out[l++] = in1[i++];
1008a9d7e0ccSandi selinger   while (j < size2) out[l++] = in2[j++];
1009a9d7e0ccSandi selinger   while (k < size3) out[l++] = in3[k++];
1010a9d7e0ccSandi selinger 
1011a9d7e0ccSandi selinger   *size4 = l;
1012a9d7e0ccSandi selinger }
1013a9d7e0ccSandi selinger 
101473b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
101573b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
101673b67375Sandi selinger /* matrix-matrix multiplications.  */
1017d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1018d71ae5a4SJacob Faibussowitsch {
1019a9d7e0ccSandi selinger   MPI_Comm           comm;
1020a9d7e0ccSandi selinger   PetscMPIInt        size;
10213cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1022a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag = NULL, current_space = NULL;
1023a9d7e0ccSandi selinger   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
1024f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc;
1025a9d7e0ccSandi selinger   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1026a9d7e0ccSandi selinger   Mat_SeqAIJ        *adpd_seq, *p_off, *aopoth_seq;
1027a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10287dbaa2c6Sandi selinger   PetscInt          *pi_loc, *dnz, *onz;
1029a9d7e0ccSandi selinger   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10309371c9d4SSatish Balay   PetscInt          *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1031a016958eSandi selinger   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1032a9d7e0ccSandi selinger   PetscBT            lnkbt;
1033a9d7e0ccSandi selinger   PetscReal          afill;
1034a9d7e0ccSandi selinger   PetscMPIInt        rank;
1035a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1036b92f168fSBarry Smith   MatType            mtype;
1037e83e5f86SFande Kong   const char        *prefix;
1038a9d7e0ccSandi selinger 
1039a9d7e0ccSandi selinger   PetscFunctionBegin;
10406718818eSStefano Zampini   MatCheckProduct(C, 4);
104128b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10429566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10439566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
10449566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10459566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1046a9d7e0ccSandi selinger 
10473cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
10489566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1049a9d7e0ccSandi selinger 
1050a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10519566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1052a9d7e0ccSandi selinger 
1053a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10549566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1055a9d7e0ccSandi selinger 
1056f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
1057a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1058a9d7e0ccSandi selinger 
1059a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
106084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
106184648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &adpoi));
1062a9d7e0ccSandi selinger 
1063a9d7e0ccSandi selinger   adpoi[0]  = 0;
1064a9d7e0ccSandi selinger   ptap->api = api;
1065a9d7e0ccSandi selinger   api[0]    = 0;
1066a9d7e0ccSandi selinger 
1067a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10689566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1069d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
1070a9d7e0ccSandi selinger 
1071a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10729566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10739566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10749566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10759566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd, prefix));
10769566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10774222ddf1SHong Zhang 
10789566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
10799566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
10809566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd, fill));
10819566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10828c78258cSHong Zhang 
10838c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10849566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10854222ddf1SHong Zhang 
1086a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
10879371c9d4SSatish Balay   adpdi    = adpd_seq->i;
10889371c9d4SSatish Balay   adpdj    = adpd_seq->j;
1089f4f49eeaSPierre Jolivet   p_off    = (Mat_SeqAIJ *)p->B->data;
10909371c9d4SSatish Balay   poff_i   = p_off->i;
10919371c9d4SSatish Balay   poff_j   = p_off->j;
1092a9d7e0ccSandi selinger 
109373b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
109484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(pN, &j_temp));
1095a9d7e0ccSandi selinger 
1096a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1097a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
10989566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1099a9d7e0ccSandi selinger   current_space = free_space_diag;
1100a9d7e0ccSandi selinger 
1101a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1102a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1103a9d7e0ccSandi selinger     nzi = adi[i + 1] - adi[i];
1104a9d7e0ccSandi selinger     for (j = 0; j < nzi; j++) {
1105a9d7e0ccSandi selinger       row  = *adj++;
1106a9d7e0ccSandi selinger       pnz  = poff_i[row + 1] - poff_i[row];
1107a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1108ad540459SPierre Jolivet       for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]];
1109a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11109566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1111a9d7e0ccSandi selinger     }
1112a9d7e0ccSandi selinger 
1113a9d7e0ccSandi selinger     adponz       = lnk[0];
1114a9d7e0ccSandi selinger     adpoi[i + 1] = adpoi[i] + adponz;
1115a9d7e0ccSandi selinger 
1116a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1117a9d7e0ccSandi selinger     if (current_space->local_remaining < adponz) {
11189566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), &current_space));
1119a9d7e0ccSandi selinger       nspacedouble++;
1120a9d7e0ccSandi selinger     }
1121a9d7e0ccSandi selinger 
1122a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11239566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1124a9d7e0ccSandi selinger 
1125a9d7e0ccSandi selinger     current_space->array += adponz;
1126a9d7e0ccSandi selinger     current_space->local_used += adponz;
1127a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1128a9d7e0ccSandi selinger   }
1129a9d7e0ccSandi selinger 
1130a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11319566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B, prefix));
11329566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11339566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11349566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1135a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11369371c9d4SSatish Balay   aopothi    = aopoth_seq->i;
11379371c9d4SSatish Balay   aopothj    = aopoth_seq->j;
1138a9d7e0ccSandi selinger 
1139a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1140a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1141a9d7e0ccSandi selinger 
114284648c2dSPierre Jolivet   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj));
114384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(adpoi[am], &adpoj));
1144a9d7e0ccSandi selinger 
1145a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11469566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11479566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
1148a9d7e0ccSandi selinger 
1149a9d7e0ccSandi selinger   adpoJ = adpoj;
1150a9d7e0ccSandi selinger   adpdJ = adpdj;
1151a9d7e0ccSandi selinger   aopJ  = aopothj;
1152a9d7e0ccSandi selinger   apj   = ptap->apj;
1153a9d7e0ccSandi selinger   apJ   = apj; /* still empty */
1154a9d7e0ccSandi selinger 
1155a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1156a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1157a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1158a9d7e0ccSandi selinger     aopnz  = aopothi[i + 1] - aopothi[i];
1159a9d7e0ccSandi selinger     adponz = adpoi[i + 1] - adpoi[i];
1160a9d7e0ccSandi selinger     adpdnz = adpdi[i + 1] - adpdi[i];
1161a9d7e0ccSandi selinger 
1162a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1163ad540459SPierre Jolivet     for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart;
1164a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1165a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11669566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1167a9d7e0ccSandi selinger 
1168a9d7e0ccSandi selinger     aopJ += aopnz;
1169a9d7e0ccSandi selinger     adpoJ += adponz;
1170a9d7e0ccSandi selinger     adpdJ += adpdnz;
1171a9d7e0ccSandi selinger     apJ += apnz;
1172a9d7e0ccSandi selinger     api[i + 1] = api[i] + apnz;
1173a9d7e0ccSandi selinger   }
1174a9d7e0ccSandi selinger 
1175a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
117684648c2dSPierre Jolivet   PetscCall(PetscCalloc1(pN, &ptap->apa));
1177a9d7e0ccSandi selinger 
11784222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11799566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
11809566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
11819566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
11829566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
11839566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1184d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
118517f75172Sandi selinger 
11869566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
11879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
11889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
11899566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
119017f75172Sandi selinger 
11914222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11924222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1193a9d7e0ccSandi selinger 
11944222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11956718818eSStefano Zampini   C->product->data    = ptap;
11966718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1197a9d7e0ccSandi selinger 
1198a9d7e0ccSandi selinger   /* set MatInfo */
119973b67375Sandi selinger   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
120073b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
12014222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
12024222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
12034222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1204a9d7e0ccSandi selinger 
1205a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1206a9d7e0ccSandi selinger   if (api[am]) {
12079566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
12089566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1209a9d7e0ccSandi selinger   } else {
12109566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1211a9d7e0ccSandi selinger   }
1212a9d7e0ccSandi selinger #endif
1213a9d7e0ccSandi selinger 
12149566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12159566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12169566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12179566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12189566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
12193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1220a9d7e0ccSandi selinger }
1221a9d7e0ccSandi selinger 
1222c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1223d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C)
1224d71ae5a4SJacob Faibussowitsch {
12256718818eSStefano Zampini   Mat_APMPI *ptap;
122660552ceaSHong Zhang   Mat        Pt;
1227c216dbf3SHong Zhang 
1228c216dbf3SHong Zhang   PetscFunctionBegin;
12296718818eSStefano Zampini   MatCheckProduct(C, 3);
12306718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
123128b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
123228b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
123360552ceaSHong Zhang 
123460552ceaSHong Zhang   Pt = ptap->Pt;
12351cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(P, Pt));
12369566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12379566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
12383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1239f96d37fcSHong Zhang }
1240f96d37fcSHong Zhang 
1241c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
1242d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C)
1243d71ae5a4SJacob Faibussowitsch {
12443cdca5ebSHong Zhang   Mat_APMPI               *ptap;
12456718818eSStefano Zampini   Mat_MPIAIJ              *p = (Mat_MPIAIJ *)P->data;
1246912837bbSHong Zhang   MPI_Comm                 comm;
1247912837bbSHong Zhang   PetscMPIInt              size, rank;
1248912837bbSHong Zhang   PetscFreeSpaceList       free_space = NULL, current_space = NULL;
12494ede91e3SHong Zhang   PetscInt                 pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
12506497c311SBarry Smith   PetscInt                *lnk, i, k, rstart;
1251912837bbSHong Zhang   PetscBT                  lnkbt;
12526497c311SBarry Smith   PetscMPIInt              tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend;
1253ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted = 0;
12548c78258cSHong Zhang   PetscInt               **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12556497c311SBarry Smith   PetscInt                 len, *dnz, *onz, *owners, nzi;
1256912837bbSHong Zhang   PetscInt                 nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1257912837bbSHong Zhang   MPI_Request             *swaits, *rwaits;
1258912837bbSHong Zhang   MPI_Status              *sstatus, rstatus;
1259912837bbSHong Zhang   PetscLayout              rowmap;
1260912837bbSHong Zhang   PetscInt                *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1261912837bbSHong Zhang   PetscMPIInt             *len_r, *id_r;          /* array of length of comm->size, store send/recv matrix values */
12627f3e1f30SHong Zhang   PetscInt                *Jptr, *prmap = p->garray, con, j, Crmax;
12634ede91e3SHong Zhang   Mat_SeqAIJ              *a_loc, *c_loc, *c_oth;
1264eec179cfSJacob Faibussowitsch   PetscHMapI               ta;
1265b92f168fSBarry Smith   MatType                  mtype;
1266e83e5f86SFande Kong   const char              *prefix;
1267912837bbSHong Zhang 
1268912837bbSHong Zhang   PetscFunctionBegin;
12699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
12719566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1272912837bbSHong Zhang 
12734222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12749566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
12759566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
1276912837bbSHong Zhang 
12774222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1278912837bbSHong Zhang 
12793cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
12809566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1281912837bbSHong Zhang 
1282912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1283acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1284acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1285912837bbSHong Zhang 
1286669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
12879566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1288912837bbSHong Zhang 
12894ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
12909566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
12919566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
12929566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
12939566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
12949566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1295912837bbSHong Zhang 
1296912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1297912837bbSHong Zhang   /* determine row ownership */
12989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &rowmap));
1299912837bbSHong Zhang   rowmap->n  = pn;
1300912837bbSHong Zhang   rowmap->bs = 1;
13019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1302912837bbSHong Zhang   owners = rowmap->range;
1303912837bbSHong Zhang 
1304912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
130584648c2dSPierre Jolivet   PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co));
13069566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s, size));
13079566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si, size));
1308912837bbSHong Zhang 
1309912837bbSHong Zhang   c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
13109371c9d4SSatish Balay   coi   = c_oth->i;
13119371c9d4SSatish Balay   coj   = c_oth->j;
1312912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1313912837bbSHong Zhang   proc  = 0;
1314912837bbSHong Zhang   for (i = 0; i < con; i++) {
1315912837bbSHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
13167f3e1f30SHong Zhang     len_si[proc]++;                     /* num of rows in Co(=Pt*A) to be sent to [proc] */
1317912837bbSHong Zhang     len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1318912837bbSHong Zhang   }
1319912837bbSHong Zhang 
1320912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1321912837bbSHong Zhang   owners_co[0] = 0;
1322912837bbSHong Zhang   nsend        = 0;
1323912837bbSHong Zhang   for (proc = 0; proc < size; proc++) {
1324912837bbSHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1325912837bbSHong Zhang     if (len_s[proc]) {
1326912837bbSHong Zhang       nsend++;
1327912837bbSHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1328912837bbSHong Zhang       len += len_si[proc];
1329912837bbSHong Zhang     }
1330912837bbSHong Zhang   }
1331912837bbSHong Zhang 
1332912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13339566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13349566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1335912837bbSHong Zhang 
1336912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13379566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
13389566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
133984648c2dSPierre Jolivet   PetscCall(PetscMalloc1(nsend, &swaits));
1340912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1341912837bbSHong Zhang     if (!len_s[proc]) continue;
1342912837bbSHong Zhang     i = owners_co[proc];
13436497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1344912837bbSHong Zhang     k++;
1345912837bbSHong Zhang   }
1346912837bbSHong Zhang 
13477f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
13489566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13499566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13509566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13519566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1352912837bbSHong Zhang   c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1353912837bbSHong Zhang 
1354912837bbSHong Zhang   /* receives coj are complete */
135548a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13569566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13579566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1358912837bbSHong Zhang 
1359912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
1360f4f49eeaSPierre Jolivet   a_loc = (Mat_SeqAIJ *)ptap->A_loc->data;
1361669e9c86SHong Zhang 
1362669e9c86SHong Zhang   /* create and initialize a linked list */
1363eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */
13644ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1365669e9c86SHong Zhang 
1366912837bbSHong Zhang   for (k = 0; k < nrecv; k++) { /* k-th received message */
1367912837bbSHong Zhang     Jptr = buf_rj[k];
1368c76ffc5fSJacob Faibussowitsch     for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
1369912837bbSHong Zhang   }
1370eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
1371eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
1372912837bbSHong Zhang 
1373912837bbSHong Zhang   /* (4) send and recv coi */
13749566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
13759566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
137684648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1377912837bbSHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1378912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1379912837bbSHong Zhang     if (!len_s[proc]) continue;
1380912837bbSHong Zhang     /* form outgoing message for i-structure:
1381912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1382912837bbSHong Zhang                [1:nrows]:           row index (global)
1383912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1384912837bbSHong Zhang     */
1385912837bbSHong Zhang     nrows       = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1386912837bbSHong Zhang     buf_si_i    = buf_si + nrows + 1;
1387912837bbSHong Zhang     buf_si[0]   = nrows;
1388912837bbSHong Zhang     buf_si_i[0] = 0;
1389912837bbSHong Zhang     nrows       = 0;
1390912837bbSHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1391912837bbSHong Zhang       nzi                 = coi[i + 1] - coi[i];
1392912837bbSHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1393912837bbSHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1394912837bbSHong Zhang       nrows++;
1395912837bbSHong Zhang     }
13966497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1397912837bbSHong Zhang     k++;
1398912837bbSHong Zhang     buf_si += len_si[proc];
1399912837bbSHong Zhang   }
140048a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
14019566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
14029566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1403912837bbSHong Zhang 
14049566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
14059566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
14069566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
14079566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1408912837bbSHong Zhang 
14094222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1410bbea24aaSStefano Zampini   /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */
14119566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1412912837bbSHong Zhang   current_space = free_space;
1413912837bbSHong Zhang 
14149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1415912837bbSHong Zhang   for (k = 0; k < nrecv; k++) {
1416912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1417912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1418912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1419a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1420912837bbSHong Zhang   }
1421912837bbSHong Zhang 
1422d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, an, dnz, onz);
14239566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14248c78258cSHong Zhang   for (i = 0; i < pn; i++) { /* for each local row of C */
14254222ddf1SHong Zhang     /* add C_loc into C */
1426912837bbSHong Zhang     nzi  = c_loc->i[i + 1] - c_loc->i[i];
1427912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14289566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1429912837bbSHong Zhang 
1430912837bbSHong Zhang     /* add received col data into lnk */
1431912837bbSHong Zhang     for (k = 0; k < nrecv; k++) { /* k-th received message */
1432912837bbSHong Zhang       if (i == *nextrow[k]) {     /* i-th row */
1433912837bbSHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1434912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14359566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14369371c9d4SSatish Balay         nextrow[k]++;
14379371c9d4SSatish Balay         nextci[k]++;
1438912837bbSHong Zhang       }
1439912837bbSHong Zhang     }
14408c78258cSHong Zhang 
14418c78258cSHong Zhang     /* add missing diagonal entry */
14428c78258cSHong Zhang     if (C->force_diagonals) {
14438c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14449566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14458c78258cSHong Zhang     }
14468c78258cSHong Zhang 
1447912837bbSHong Zhang     nzi = lnk[0];
1448912837bbSHong Zhang 
1449912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14509566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14519566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1452912837bbSHong Zhang   }
14539566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14549566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
14559566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1456912837bbSHong Zhang 
1457912837bbSHong Zhang   /* local sizes and preallocation */
14589566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
145958b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
146058b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14619566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1462d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
1463912837bbSHong Zhang 
146469be949aSStefano Zampini   /* add C_loc and C_oth to C */
14659566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
146669be949aSStefano Zampini   for (i = 0; i < pn; i++) {
14678c78258cSHong Zhang     ncols = c_loc->i[i + 1] - c_loc->i[i];
14688c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14698c78258cSHong Zhang     row   = rstart + i;
14709566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14718c78258cSHong Zhang 
147248a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
147369be949aSStefano Zampini   }
147469be949aSStefano Zampini   for (i = 0; i < con; i++) {
14758c78258cSHong Zhang     ncols = c_oth->i[i + 1] - c_oth->i[i];
14768c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14778c78258cSHong Zhang     row   = prmap[i];
14789566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
147969be949aSStefano Zampini   }
14809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14829566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
148369be949aSStefano Zampini 
1484912837bbSHong Zhang   /* members in merge */
14859566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
14869566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
14879566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
14889566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
14899566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
14909566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
14919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1492912837bbSHong Zhang 
14934222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
14946718818eSStefano Zampini   C->product->data    = ptap;
14956718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
14963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1497912837bbSHong Zhang }
1498912837bbSHong Zhang 
1499d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C)
1500d71ae5a4SJacob Faibussowitsch {
15016718818eSStefano Zampini   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1502669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
15036718818eSStefano Zampini   Mat_APMPI         *ptap;
1504669e9c86SHong Zhang   Mat                A_loc, C_loc, C_oth;
1505912837bbSHong Zhang   PetscInt           i, rstart, rend, cm, ncols, row;
1506912837bbSHong Zhang   const PetscInt    *cols;
1507912837bbSHong Zhang   const PetscScalar *vals;
1508912837bbSHong Zhang 
1509912837bbSHong Zhang   PetscFunctionBegin;
15106718818eSStefano Zampini   MatCheckProduct(C, 3);
15116718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
151228b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
151328b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15149566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1515912837bbSHong Zhang 
1516669e9c86SHong Zhang   /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1517669e9c86SHong Zhang   /* 1) get R = Pd^T, Ro = Po^T */
15181cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1519acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15201cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1521acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1522669e9c86SHong Zhang 
1523669e9c86SHong Zhang   /* 2) compute numeric A_loc */
15249566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1525912837bbSHong Zhang 
1526669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15274ede91e3SHong Zhang   A_loc = ptap->A_loc;
1528f4f49eeaSPierre Jolivet   PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc));
1529f4f49eeaSPierre Jolivet   PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth));
1530912837bbSHong Zhang   C_loc = ptap->C_loc;
1531912837bbSHong Zhang   C_oth = ptap->C_oth;
1532912837bbSHong Zhang 
153369be949aSStefano Zampini   /* add C_loc and C_oth to C */
15349566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1535912837bbSHong Zhang 
1536912837bbSHong Zhang   /* C_loc -> C */
1537912837bbSHong Zhang   cm    = C_loc->rmap->N;
1538912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_loc->data;
1539912837bbSHong Zhang   cols  = c_seq->j;
1540912837bbSHong Zhang   vals  = c_seq->a;
1541912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1542912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1543912837bbSHong Zhang     row   = rstart + i;
15449566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15459371c9d4SSatish Balay     cols += ncols;
15469371c9d4SSatish Balay     vals += ncols;
1547912837bbSHong Zhang   }
1548912837bbSHong Zhang 
1549912837bbSHong Zhang   /* Co -> C, off-processor part */
1550912837bbSHong Zhang   cm    = C_oth->rmap->N;
1551912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_oth->data;
1552912837bbSHong Zhang   cols  = c_seq->j;
1553912837bbSHong Zhang   vals  = c_seq->a;
1554912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1555912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1556912837bbSHong Zhang     row   = p->garray[i];
15579566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15589371c9d4SSatish Balay     cols += ncols;
15599371c9d4SSatish Balay     vals += ncols;
1560912837bbSHong Zhang   }
15619566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15639566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
15643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1565912837bbSHong Zhang }
1566912837bbSHong Zhang 
1567d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C)
1568d71ae5a4SJacob Faibussowitsch {
1569d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
15706718818eSStefano Zampini   Mat_MPIAIJ          *p  = (Mat_MPIAIJ *)P->data;
1571f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data;
15721cdffd5eSHong Zhang   Mat_APMPI           *ap;
1573e745005bSHong Zhang   PetscInt            *adj;
1574e745005bSHong Zhang   PetscInt             i, j, k, anz, pnz, row, *cj, nexta;
1575e745005bSHong Zhang   MatScalar           *ada, *ca, valtmp;
1576d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1577ce94432eSBarry Smith   MPI_Comm             comm;
15786497c311SBarry Smith   PetscMPIInt          size, rank, taga, *len_s, proc;
15796497c311SBarry Smith   PetscInt            *owners, nrows, **buf_ri_k, **nextrow, **nextci;
1580d6ab1dc0SHong Zhang   PetscInt           **buf_ri, **buf_rj;
1581d6ab1dc0SHong Zhang   PetscInt             cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1582d6ab1dc0SHong Zhang   MPI_Request         *s_waits, *r_waits;
1583d6ab1dc0SHong Zhang   MPI_Status          *status;
1584d6ab1dc0SHong Zhang   MatScalar          **abuf_r, *ba_i, *pA, *coa, *ba;
1585ce496241SStefano Zampini   const PetscScalar   *dummy;
15864e201bd7SHong Zhang   PetscInt            *ai, *aj, *coi, *coj, *poJ, *pdJ;
1587d6ab1dc0SHong Zhang   Mat                  A_loc;
1588d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1589d6ab1dc0SHong Zhang 
1590d6ab1dc0SHong Zhang   PetscFunctionBegin;
15916718818eSStefano Zampini   MatCheckProduct(C, 3);
15921cdffd5eSHong Zhang   ap = (Mat_APMPI *)C->product->data;
15931cdffd5eSHong Zhang   PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
15941cdffd5eSHong Zhang   PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15959566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
15969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
15979566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1598d6ab1dc0SHong Zhang 
15991cdffd5eSHong Zhang   merge = ap->merge;
1600d6ab1dc0SHong Zhang 
1601e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1602d6ab1dc0SHong Zhang   /* get data from symbolic products */
16039371c9d4SSatish Balay   coi = merge->coi;
16049371c9d4SSatish Balay   coj = merge->coj;
160584648c2dSPierre Jolivet   PetscCall(PetscCalloc1(coi[pon], &coa));
16069371c9d4SSatish Balay   bi     = merge->bi;
16079371c9d4SSatish Balay   bj     = merge->bj;
1608d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
160984648c2dSPierre Jolivet   PetscCall(PetscCalloc1(bi[cm], &ba));
1610d6ab1dc0SHong Zhang 
1611d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
16121cdffd5eSHong Zhang   A_loc = ap->A_loc;
16139566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
161457508eceSPierre Jolivet   a_loc = (Mat_SeqAIJ *)A_loc->data;
1615d6ab1dc0SHong Zhang   ai    = a_loc->i;
1616d6ab1dc0SHong Zhang   aj    = a_loc->j;
1617d6ab1dc0SHong Zhang 
1618ce496241SStefano Zampini   /* trigger copy to CPU */
16199566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16209566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16229566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1623d6ab1dc0SHong Zhang   for (i = 0; i < am; i++) {
1624d6ab1dc0SHong Zhang     anz = ai[i + 1] - ai[i];
1625d6ab1dc0SHong Zhang     adj = aj + ai[i];
1626d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1627d6ab1dc0SHong Zhang 
1628d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1629d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1630d6ab1dc0SHong Zhang     pnz = po->i[i + 1] - po->i[i];
1631d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1632d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1633d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1634d6ab1dc0SHong Zhang       row = poJ[j];
1635d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1636d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1637e745005bSHong Zhang       /* perform sparse axpy */
1638e745005bSHong Zhang       nexta  = 0;
1639d6ab1dc0SHong Zhang       valtmp = pA[j];
1640e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1641e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1642e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1643e745005bSHong Zhang           nexta++;
1644d6ab1dc0SHong Zhang         }
1645e745005bSHong Zhang       }
16469566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1647d6ab1dc0SHong Zhang     }
1648d6ab1dc0SHong Zhang 
1649d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1650d6ab1dc0SHong Zhang     pnz = pd->i[i + 1] - pd->i[i];
1651d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1652d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1653d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1654d6ab1dc0SHong Zhang       row = pdJ[j];
1655d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1656d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1657e745005bSHong Zhang       /* perform sparse axpy */
1658e745005bSHong Zhang       nexta  = 0;
1659d6ab1dc0SHong Zhang       valtmp = pA[j];
1660e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1661e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1662e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1663e745005bSHong Zhang           nexta++;
1664d6ab1dc0SHong Zhang         }
1665e745005bSHong Zhang       }
16669566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1667d6ab1dc0SHong Zhang     }
1668d6ab1dc0SHong Zhang   }
1669d6ab1dc0SHong Zhang 
1670d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1671d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1672d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1673d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16749566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &taga));
16759566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1676d6ab1dc0SHong Zhang 
167784648c2dSPierre Jolivet   PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status));
1678d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1679d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1680d6ab1dc0SHong Zhang     i = merge->owners_co[proc];
16816497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1682d6ab1dc0SHong Zhang     k++;
1683d6ab1dc0SHong Zhang   }
16849566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
16859566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1686d6ab1dc0SHong Zhang 
16879566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits, status));
16889566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
16899566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1690d6ab1dc0SHong Zhang 
1691d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
16929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1693d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1694e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1695f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
1696d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1697a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1698d6ab1dc0SHong Zhang   }
1699d6ab1dc0SHong Zhang 
1700d6ab1dc0SHong Zhang   for (i = 0; i < cm; i++) {
1701d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1702d6ab1dc0SHong Zhang     bj_i = bj + bi[i];       /* col indices of the i-th row of C */
1703d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1704d6ab1dc0SHong Zhang     bnz  = bi[i + 1] - bi[i];
1705d6ab1dc0SHong Zhang     /* add received vals into ba */
1706d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1707d6ab1dc0SHong Zhang       /* i-th row */
1708d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1709d6ab1dc0SHong Zhang         cnz    = *(nextci[k] + 1) - *nextci[k];
1710f4f49eeaSPierre Jolivet         cj     = buf_rj[k] + *nextci[k];
1711f4f49eeaSPierre Jolivet         ca     = abuf_r[k] + *nextci[k];
1712d6ab1dc0SHong Zhang         nextcj = 0;
1713d6ab1dc0SHong Zhang         for (j = 0; nextcj < cnz; j++) {
1714d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1715d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1716d6ab1dc0SHong Zhang           }
1717d6ab1dc0SHong Zhang         }
17189371c9d4SSatish Balay         nextrow[k]++;
17199371c9d4SSatish Balay         nextci[k]++;
17209566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * cnz));
1721d6ab1dc0SHong Zhang       }
1722d6ab1dc0SHong Zhang     }
17239566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1724d6ab1dc0SHong Zhang   }
17259566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17269566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1727d6ab1dc0SHong Zhang 
17289566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17299566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17309566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17319566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
17323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1733d6ab1dc0SHong Zhang }
1734d6ab1dc0SHong Zhang 
1735d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C)
1736d71ae5a4SJacob Faibussowitsch {
1737b419842dSStefano Zampini   Mat                  A_loc;
17381cdffd5eSHong Zhang   Mat_APMPI           *ap;
17390298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
17406718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1741d6ab1dc0SHong Zhang   PetscInt            *pdti, *pdtj, *poti, *potj, *ptJ;
1742d6ab1dc0SHong Zhang   PetscInt             nnz;
1743d6ab1dc0SHong Zhang   PetscInt            *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1744d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, pn = P->cmap->n;
1745ce94432eSBarry Smith   MPI_Comm             comm;
17466497c311SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc;
1747d6ab1dc0SHong Zhang   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
17486497c311SBarry Smith   PetscInt             len, *dnz, *onz, *owners;
1749d6ab1dc0SHong Zhang   PetscInt             nzi, *bi, *bj;
1750d6ab1dc0SHong Zhang   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1751d6ab1dc0SHong Zhang   MPI_Request         *swaits, *rwaits;
1752d6ab1dc0SHong Zhang   MPI_Status          *sstatus, rstatus;
1753d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1754d6ab1dc0SHong Zhang   PetscInt            *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1755d6ab1dc0SHong Zhang   PetscReal            afill  = 1.0, afill_tmp;
1756eec179cfSJacob Faibussowitsch   PetscInt             rstart = P->cmap->rstart, rmax, Armax;
1757b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
1758eec179cfSJacob Faibussowitsch   PetscHMapI           ta;
1759b92f168fSBarry Smith   MatType              mtype;
1760d6ab1dc0SHong Zhang 
1761d6ab1dc0SHong Zhang   PetscFunctionBegin;
17629566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1763d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17649371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17659371c9d4SSatish Balay              A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1766d6ab1dc0SHong Zhang 
17679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1769d6ab1dc0SHong Zhang 
17703cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
17711cdffd5eSHong Zhang   PetscCall(PetscNew(&ap));
1772d6ab1dc0SHong Zhang 
1773d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17749566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17752205254eSKarl Rupp 
17761cdffd5eSHong Zhang   ap->A_loc = A_loc;
177757508eceSPierre Jolivet   a_loc     = (Mat_SeqAIJ *)A_loc->data;
1778d6ab1dc0SHong Zhang   ai        = a_loc->i;
1779d6ab1dc0SHong Zhang   aj        = a_loc->j;
1780d6ab1dc0SHong Zhang 
1781d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
17829566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
17839566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1784d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1785d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
17869566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon + 1, &coi));
1787d6ab1dc0SHong Zhang   coi[0] = 0;
1788d6ab1dc0SHong Zhang 
1789d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1790f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
17919566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1792d6ab1dc0SHong Zhang   current_space = free_space;
179319f0e57aSHong Zhang 
1794d6ab1dc0SHong Zhang   /* create and initialize a linked list */
1795eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta));
17964b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, am, ta);
1797eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
179833ba5e2fSHong Zhang 
17999566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1800d6ab1dc0SHong Zhang 
1801d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1802d6ab1dc0SHong Zhang     pnz = poti[i + 1] - poti[i];
1803d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1804d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1805d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1806d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1807d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1808d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18099566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1810d6ab1dc0SHong Zhang     }
1811d6ab1dc0SHong Zhang     nnz = lnk[0];
1812d6ab1dc0SHong Zhang 
1813d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1814d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
18159566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1816d6ab1dc0SHong Zhang       nspacedouble++;
1817d6ab1dc0SHong Zhang     }
1818d6ab1dc0SHong Zhang 
1819d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18209566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18212205254eSKarl Rupp 
1822d6ab1dc0SHong Zhang     current_space->array += nnz;
1823d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1824d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18252205254eSKarl Rupp 
1826d6ab1dc0SHong Zhang     coi[i + 1] = coi[i] + nnz;
1827d6ab1dc0SHong Zhang   }
1828d6ab1dc0SHong Zhang 
182984648c2dSPierre Jolivet   PetscCall(PetscMalloc1(coi[pon], &coj));
18309566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18319566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18322205254eSKarl Rupp 
1833118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1834d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1835d6ab1dc0SHong Zhang 
1836d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1837d6ab1dc0SHong Zhang   /* determine row ownership */
18389566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18402205254eSKarl Rupp 
1841d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1842d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18432205254eSKarl Rupp 
18449566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1845d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1846d6ab1dc0SHong Zhang 
1847d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18489566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &len_si));
18499566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &merge->len_s));
18502205254eSKarl Rupp 
1851d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1852d6ab1dc0SHong Zhang   merge->nsend = 0;
1853d6ab1dc0SHong Zhang 
185484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(size + 1, &owners_co));
1855d6ab1dc0SHong Zhang 
1856d6ab1dc0SHong Zhang   proc = 0;
1857d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1858d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
1859d6ab1dc0SHong Zhang     len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1860d6ab1dc0SHong Zhang     len_s[proc] += coi[i + 1] - coi[i];
1861d6ab1dc0SHong Zhang   }
1862d6ab1dc0SHong Zhang 
1863d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1864d6ab1dc0SHong Zhang   owners_co[0] = 0;
1865d6ab1dc0SHong Zhang   for (proc = 0; proc < size; proc++) {
1866d6ab1dc0SHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1867216f1e5cSPierre Jolivet     if (len_s[proc]) {
1868d6ab1dc0SHong Zhang       merge->nsend++;
1869d6ab1dc0SHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1);
1870d6ab1dc0SHong Zhang       len += len_si[proc];
1871d6ab1dc0SHong Zhang     }
1872d6ab1dc0SHong Zhang   }
1873d6ab1dc0SHong Zhang 
1874d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18759566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18769566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1877d6ab1dc0SHong Zhang 
1878d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
18799566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
18809566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
188184648c2dSPierre Jolivet   PetscCall(PetscMalloc1(merge->nsend, &swaits));
1882d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1883d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1884d6ab1dc0SHong Zhang     i = owners_co[proc];
18856497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1886d6ab1dc0SHong Zhang     k++;
1887d6ab1dc0SHong Zhang   }
1888d6ab1dc0SHong Zhang 
1889d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
18909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &sstatus));
1891d6ab1dc0SHong Zhang   for (i = 0; i < merge->nrecv; i++) {
1892ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
18939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1894d6ab1dc0SHong Zhang   }
18959566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
18969566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1897d6ab1dc0SHong Zhang 
18980acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1899c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19000acc65b4SHong Zhang   for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
19010acc65b4SHong Zhang     Jptr = buf_rj[k];
1902c76ffc5fSJacob Faibussowitsch     for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
19030acc65b4SHong Zhang   }
1904eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
19050acc65b4SHong Zhang 
1906d6ab1dc0SHong Zhang   /* send and recv coi */
19079566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
19089566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
190984648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1910d6ab1dc0SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1911d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1912d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1913d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1914d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1915d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1916d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1917d6ab1dc0SHong Zhang     */
1918d6ab1dc0SHong Zhang     nrows       = len_si[proc] / 2 - 1;
1919d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows + 1;
1920d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1921d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1922d6ab1dc0SHong Zhang     nrows       = 0;
1923d6ab1dc0SHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1924d6ab1dc0SHong Zhang       nzi                 = coi[i + 1] - coi[i];
1925d6ab1dc0SHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1926d6ab1dc0SHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1927d6ab1dc0SHong Zhang       nrows++;
1928d6ab1dc0SHong Zhang     }
19296497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1930d6ab1dc0SHong Zhang     k++;
1931d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1932d6ab1dc0SHong Zhang   }
1933d6ab1dc0SHong Zhang   i = merge->nrecv;
1934d6ab1dc0SHong Zhang   while (i--) {
1935ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19369566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1937d6ab1dc0SHong Zhang   }
19389566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19399566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19409566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19419566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19429566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19439566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19449566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1945d6ab1dc0SHong Zhang 
1946d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1947d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn + 1, &bi));
1949d6ab1dc0SHong Zhang   bi[0] = 0;
1950d6ab1dc0SHong Zhang 
1951d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1952f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19539566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1954d6ab1dc0SHong Zhang   current_space = free_space;
1955d6ab1dc0SHong Zhang 
19569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1957d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1958d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1959d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1960d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
19612d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1962d6ab1dc0SHong Zhang   }
1963d6ab1dc0SHong Zhang 
19649566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1965d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1966d6ab1dc0SHong Zhang   rmax = 0;
1967d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
1968d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1969d6ab1dc0SHong Zhang     pnz = pdti[i + 1] - pdti[i];
1970d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1971d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1972d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of AP == col of Pt */
1973d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1974d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1975d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
19769566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1977d6ab1dc0SHong Zhang     }
1978d6ab1dc0SHong Zhang 
1979d6ab1dc0SHong Zhang     /* add received col data into lnk */
1980d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1981d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
1982d6ab1dc0SHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1983d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
19849566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
19859371c9d4SSatish Balay         nextrow[k]++;
19869371c9d4SSatish Balay         nextci[k]++;
1987d6ab1dc0SHong Zhang       }
1988d6ab1dc0SHong Zhang     }
19898c78258cSHong Zhang 
19908c78258cSHong Zhang     /* add missing diagonal entry */
19918c78258cSHong Zhang     if (C->force_diagonals) {
19928c78258cSHong Zhang       k = i + owners[rank]; /* column index */
19939566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
19948c78258cSHong Zhang     }
19958c78258cSHong Zhang 
1996d6ab1dc0SHong Zhang     nnz = lnk[0];
1997d6ab1dc0SHong Zhang 
1998d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
1999d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
20009566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
2001d6ab1dc0SHong Zhang       nspacedouble++;
2002d6ab1dc0SHong Zhang     }
2003d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
20049566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
20059566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
20062205254eSKarl Rupp 
2007d6ab1dc0SHong Zhang     current_space->array += nnz;
2008d6ab1dc0SHong Zhang     current_space->local_used += nnz;
2009d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20102205254eSKarl Rupp 
2011d6ab1dc0SHong Zhang     bi[i + 1] = bi[i] + nnz;
2012d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2013d6ab1dc0SHong Zhang   }
20149566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2015d6ab1dc0SHong Zhang 
201684648c2dSPierre Jolivet   PetscCall(PetscMalloc1(bi[pn], &bj));
20179566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2018118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2019d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20209566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
2021eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
20229566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20239566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2024d6ab1dc0SHong Zhang 
20254222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20269566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
202758b7e2c1SStefano Zampini   PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs));
20289566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
20299566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
20309566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2031d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
20329566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C, 1));
20339566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2034d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
2035d6ab1dc0SHong Zhang     row  = i + rstart;
2036d6ab1dc0SHong Zhang     nnz  = bi[i + 1] - bi[i];
2037d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20389566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2039d6ab1dc0SHong Zhang   }
20409566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20419566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20429566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2043d6ab1dc0SHong Zhang   merge->bi        = bi;
2044d6ab1dc0SHong Zhang   merge->bj        = bj;
2045d6ab1dc0SHong Zhang   merge->coi       = coi;
2046d6ab1dc0SHong Zhang   merge->coj       = coj;
2047d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2048d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2049d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2050d6ab1dc0SHong Zhang 
20514222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20521cdffd5eSHong Zhang   C->product->data    = ap;
20536718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
20541cdffd5eSHong Zhang   ap->merge           = merge;
2055a560ef98SHong Zhang 
20564222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2057f96d37fcSHong Zhang 
2058f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2059f96d37fcSHong Zhang   if (bi[pn] != 0) {
20609566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20619566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2062f96d37fcSHong Zhang   } else {
20639566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
2064f96d37fcSHong Zhang   }
2065f96d37fcSHong Zhang #endif
20663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2067f96d37fcSHong Zhang }
20684222ddf1SHong Zhang 
2069d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
2070d71ae5a4SJacob Faibussowitsch {
20714222ddf1SHong Zhang   Mat_Product *product = C->product;
20724222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
20734222ddf1SHong Zhang   PetscReal    fill = product->fill;
20744222ddf1SHong Zhang   PetscBool    flg;
20754222ddf1SHong Zhang 
20764222ddf1SHong Zhang   PetscFunctionBegin;
20774222ddf1SHong Zhang   /* scalable */
20789566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
20794222ddf1SHong Zhang   if (flg) {
20809566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
20814222ddf1SHong Zhang     goto next;
20824222ddf1SHong Zhang   }
20834222ddf1SHong Zhang 
20844222ddf1SHong Zhang   /* nonscalable */
20859566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
20864222ddf1SHong Zhang   if (flg) {
20879566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
20884222ddf1SHong Zhang     goto next;
20894222ddf1SHong Zhang   }
20904222ddf1SHong Zhang 
20914222ddf1SHong Zhang   /* matmatmult */
20929566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
20934222ddf1SHong Zhang   if (flg) {
20944222ddf1SHong Zhang     Mat        At;
20954222ddf1SHong Zhang     Mat_APMPI *ptap;
20964222ddf1SHong Zhang 
20979566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
20989566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
20996718818eSStefano Zampini     ptap = (Mat_APMPI *)C->product->data;
21004222ddf1SHong Zhang     if (ptap) {
21014222ddf1SHong Zhang       ptap->Pt            = At;
21026718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
21034222ddf1SHong Zhang     }
21044222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21054222ddf1SHong Zhang     goto next;
21064222ddf1SHong Zhang   }
21074222ddf1SHong Zhang 
21084e84afc0SStefano Zampini   /* backend general code */
21099566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "backend", &flg));
21104e84afc0SStefano Zampini   if (flg) {
21119566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21123ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
21134e84afc0SStefano Zampini   }
21144e84afc0SStefano Zampini 
21154222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21164222ddf1SHong Zhang 
21174222ddf1SHong Zhang next:
21184222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21204222ddf1SHong Zhang }
21214222ddf1SHong Zhang 
21224222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
2123d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
2124d71ae5a4SJacob Faibussowitsch {
21254222ddf1SHong Zhang   Mat_Product *product = C->product;
21264222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21274222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21284e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21294e84afc0SStefano Zampini   PetscInt    nalg        = 5;
21304222ddf1SHong Zhang #else
21319371c9d4SSatish Balay   const char *algTypes[4] = {
21329371c9d4SSatish Balay     "scalable",
21339371c9d4SSatish Balay     "nonscalable",
21349371c9d4SSatish Balay     "seqmpi",
21359371c9d4SSatish Balay     "backend",
21369371c9d4SSatish Balay   };
21374e84afc0SStefano Zampini   PetscInt nalg = 4;
21384222ddf1SHong Zhang #endif
21394222ddf1SHong Zhang   PetscInt  alg = 1; /* set nonscalable algorithm as default */
21404222ddf1SHong Zhang   PetscBool flg;
21414222ddf1SHong Zhang   MPI_Comm  comm;
21424222ddf1SHong Zhang 
21434222ddf1SHong Zhang   PetscFunctionBegin;
21449566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21454222ddf1SHong Zhang 
21464222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21479566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21484222ddf1SHong Zhang   if (flg) {
2149835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21504222ddf1SHong Zhang 
21514222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21524222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21534222ddf1SHong Zhang       MatInfo   Ainfo, Binfo;
21544222ddf1SHong Zhang       PetscInt  nz_local;
21554222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21564222ddf1SHong Zhang 
21579566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21589566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21594222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21604222ddf1SHong Zhang 
21614222ddf1SHong Zhang       if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21625440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
21634222ddf1SHong Zhang 
21644222ddf1SHong Zhang       if (alg_scalable) {
21654222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2166835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21679566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21684222ddf1SHong Zhang       }
21694222ddf1SHong Zhang     }
21704222ddf1SHong Zhang   }
21714222ddf1SHong Zhang 
21724222ddf1SHong Zhang   /* Get runtime option */
21734222ddf1SHong Zhang   if (product->api_user) {
2174d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
21759566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2176d0609cedSBarry Smith     PetscOptionsEnd();
21774222ddf1SHong Zhang   } else {
2178d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
21799566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2180d0609cedSBarry Smith     PetscOptionsEnd();
21814222ddf1SHong Zhang   }
2182835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21834222ddf1SHong Zhang 
21844222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
21853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21864222ddf1SHong Zhang }
21874222ddf1SHong Zhang 
2188d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2189d71ae5a4SJacob Faibussowitsch {
21908a9c020eSBarry Smith   PetscFunctionBegin;
21918a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
21928a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
21933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21948a9c020eSBarry Smith }
21958a9c020eSBarry Smith 
21964222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
2197d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
2198d71ae5a4SJacob Faibussowitsch {
21994222ddf1SHong Zhang   Mat_Product *product = C->product;
22004222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
22014e84afc0SStefano Zampini   const char  *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
22024e84afc0SStefano Zampini   PetscInt     nalg        = 4;
22034222ddf1SHong Zhang   PetscInt     alg         = 1; /* set default algorithm  */
22044222ddf1SHong Zhang   PetscBool    flg;
22054222ddf1SHong Zhang   MPI_Comm     comm;
22064222ddf1SHong Zhang 
22074222ddf1SHong Zhang   PetscFunctionBegin;
22084222ddf1SHong Zhang   /* Check matrix local sizes */
22099566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22109371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22119371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22124222ddf1SHong Zhang 
22134222ddf1SHong Zhang   /* Set default algorithm */
22149566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2215835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22164222ddf1SHong Zhang 
22174222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22184222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22194222ddf1SHong Zhang     MatInfo   Ainfo, Binfo;
22204222ddf1SHong Zhang     PetscInt  nz_local;
22214222ddf1SHong Zhang     PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22224222ddf1SHong Zhang 
22239566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22249566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22254222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22264222ddf1SHong Zhang 
22274222ddf1SHong Zhang     if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22285440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22294222ddf1SHong Zhang 
22304222ddf1SHong Zhang     if (alg_scalable) {
22314222ddf1SHong Zhang       alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2232835f2295SStefano Zampini       PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22339566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22344222ddf1SHong Zhang     }
22354222ddf1SHong Zhang   }
22364222ddf1SHong Zhang 
22374222ddf1SHong Zhang   /* Get runtime option */
22384222ddf1SHong Zhang   if (product->api_user) {
2239d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22409566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2241d0609cedSBarry Smith     PetscOptionsEnd();
22424222ddf1SHong Zhang   } else {
2243d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22449566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2245d0609cedSBarry Smith     PetscOptionsEnd();
22464222ddf1SHong Zhang   }
2247835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22484222ddf1SHong Zhang 
22494222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22514222ddf1SHong Zhang }
22524222ddf1SHong Zhang 
2253d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
2254d71ae5a4SJacob Faibussowitsch {
22554222ddf1SHong Zhang   Mat_Product *product = C->product;
22564222ddf1SHong Zhang   Mat          A = product->A, P = product->B;
22574222ddf1SHong Zhang   MPI_Comm     comm;
22584222ddf1SHong Zhang   PetscBool    flg;
22594222ddf1SHong Zhang   PetscInt     alg = 1; /* set default algorithm */
22604222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22614e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22624222ddf1SHong Zhang   PetscInt    nalg        = 5;
22634e84afc0SStefano Zampini #else
22644e84afc0SStefano Zampini   const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22654e84afc0SStefano Zampini   PetscInt    nalg        = 6;
22664222ddf1SHong Zhang #endif
22674222ddf1SHong Zhang   PetscInt pN = P->cmap->N;
22684222ddf1SHong Zhang 
22694222ddf1SHong Zhang   PetscFunctionBegin;
22704222ddf1SHong Zhang   /* Check matrix local sizes */
22719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22729371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22739371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22749371c9d4SSatish Balay   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22759371c9d4SSatish Balay              A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
22764222ddf1SHong Zhang 
22774222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22789566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
22794222ddf1SHong Zhang   if (flg) {
2280835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22814222ddf1SHong Zhang 
22824222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22834222ddf1SHong Zhang     if (pN > 100000) {
22844222ddf1SHong Zhang       MatInfo   Ainfo, Pinfo;
22854222ddf1SHong Zhang       PetscInt  nz_local;
22864222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22874222ddf1SHong Zhang 
22889566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
22904222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
22914222ddf1SHong Zhang 
22924222ddf1SHong Zhang       if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22935440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22944222ddf1SHong Zhang 
22954222ddf1SHong Zhang       if (alg_scalable) {
22964222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2297835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22984222ddf1SHong Zhang       }
22994222ddf1SHong Zhang     }
23004222ddf1SHong Zhang   }
23014222ddf1SHong Zhang 
23024222ddf1SHong Zhang   /* Get runtime option */
23034222ddf1SHong Zhang   if (product->api_user) {
2304d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
23059566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2306d0609cedSBarry Smith     PetscOptionsEnd();
23074222ddf1SHong Zhang   } else {
2308d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
23099566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2310d0609cedSBarry Smith     PetscOptionsEnd();
23114222ddf1SHong Zhang   }
2312835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23134222ddf1SHong Zhang 
23144222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23153ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23164222ddf1SHong Zhang }
23174222ddf1SHong Zhang 
2318d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
2319d71ae5a4SJacob Faibussowitsch {
23204222ddf1SHong Zhang   Mat_Product *product = C->product;
23214222ddf1SHong Zhang   Mat          A = product->A, R = product->B;
23224222ddf1SHong Zhang 
23234222ddf1SHong Zhang   PetscFunctionBegin;
23244222ddf1SHong Zhang   /* Check matrix local sizes */
23259371c9d4SSatish Balay   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23269371c9d4SSatish Balay              A->rmap->n, R->rmap->n, R->cmap->n);
23274222ddf1SHong Zhang 
23284222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23304222ddf1SHong Zhang }
23314222ddf1SHong Zhang 
23324222ddf1SHong Zhang /*
23334222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23344222ddf1SHong Zhang */
2335d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
2336d71ae5a4SJacob Faibussowitsch {
23374222ddf1SHong Zhang   Mat_Product *product     = C->product;
23384222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
23394222ddf1SHong Zhang   PetscInt     alg         = 1; /* default algorithm */
23404222ddf1SHong Zhang   const char  *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23414222ddf1SHong Zhang   PetscInt     nalg        = 3;
23424222ddf1SHong Zhang 
23434222ddf1SHong Zhang   PetscFunctionBegin;
23444222ddf1SHong Zhang   /* Set default algorithm */
23459566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2346835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23474222ddf1SHong Zhang 
23484222ddf1SHong Zhang   /* Get runtime option */
23494222ddf1SHong Zhang   if (product->api_user) {
2350d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23519566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2352d0609cedSBarry Smith     PetscOptionsEnd();
23534222ddf1SHong Zhang   } else {
2354d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23559566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2356d0609cedSBarry Smith     PetscOptionsEnd();
23574222ddf1SHong Zhang   }
2358835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23594222ddf1SHong Zhang 
23604222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23614222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23634222ddf1SHong Zhang }
23644222ddf1SHong Zhang 
2365d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
2366d71ae5a4SJacob Faibussowitsch {
23674222ddf1SHong Zhang   Mat_Product *product = C->product;
23684222ddf1SHong Zhang 
23694222ddf1SHong Zhang   PetscFunctionBegin;
23704222ddf1SHong Zhang   switch (product->type) {
2371d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2372d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2373d71ae5a4SJacob Faibussowitsch     break;
2374d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2375d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2376d71ae5a4SJacob Faibussowitsch     break;
2377d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2378d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
2379d71ae5a4SJacob Faibussowitsch     break;
2380d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_PtAP:
2381d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
2382d71ae5a4SJacob Faibussowitsch     break;
2383d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_RARt:
2384d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
2385d71ae5a4SJacob Faibussowitsch     break;
2386d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABC:
2387d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
2388d71ae5a4SJacob Faibussowitsch     break;
2389d71ae5a4SJacob Faibussowitsch   default:
2390d71ae5a4SJacob Faibussowitsch     break;
23914222ddf1SHong Zhang   }
23923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23934222ddf1SHong Zhang }
2394