xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision acd337a63cf101c557b2471e173a9369cea59de9)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
11af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
131634b032SHong Zhang 
145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat,Mat,PetscReal,Mat);
165e5acdf2Sstefano_zampini #endif
175e5acdf2Sstefano_zampini 
188a9c020eSBarry Smith PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
198a9c020eSBarry Smith {
208a9c020eSBarry Smith   Mat_Product         *product = C->product;
218a9c020eSBarry Smith   Mat                 B=product->B;
228a9c020eSBarry Smith 
238a9c020eSBarry Smith   PetscFunctionBegin;
248a9c020eSBarry Smith   PetscCall(MatTranspose(B,MAT_INITIAL_MATRIX,&product->B));
258a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
268a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
278a9c020eSBarry Smith   PetscFunctionReturn(0);
288a9c020eSBarry Smith }
298a9c020eSBarry Smith 
304222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
312499ec78SHong Zhang {
324222ddf1SHong Zhang   Mat_Product         *product = C->product;
334222ddf1SHong Zhang   Mat                 A=product->A,B=product->B;
344222ddf1SHong Zhang   MatProductAlgorithm alg=product->alg;
354222ddf1SHong Zhang   PetscReal           fill=product->fill;
365e68f438SHong Zhang   PetscBool           flg;
372499ec78SHong Zhang 
382499ec78SHong Zhang   PetscFunctionBegin;
394222ddf1SHong Zhang   /* scalable */
409566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"scalable",&flg));
414222ddf1SHong Zhang   if (flg) {
429566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C));
436718818eSStefano Zampini     PetscFunctionReturn(0);
440fc8cf34SHong Zhang   }
457d0a89b7SHong Zhang 
464222ddf1SHong Zhang   /* nonscalable */
479566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"nonscalable",&flg));
484222ddf1SHong Zhang   if (flg) {
499566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C));
506718818eSStefano Zampini     PetscFunctionReturn(0);
514222ddf1SHong Zhang   }
524222ddf1SHong Zhang 
534222ddf1SHong Zhang   /* seqmpi */
549566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"seqmpi",&flg));
554222ddf1SHong Zhang   if (flg) {
569566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A,B,fill,C));
576718818eSStefano Zampini     PetscFunctionReturn(0);
584222ddf1SHong Zhang   }
594222ddf1SHong Zhang 
604e84afc0SStefano Zampini   /* backend general code */
619566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"backend",&flg));
624e84afc0SStefano Zampini   if (flg) {
639566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
644e84afc0SStefano Zampini     PetscFunctionReturn(0);
654e84afc0SStefano Zampini   }
664e84afc0SStefano Zampini 
674222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
689566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"hypre",&flg));
694222ddf1SHong Zhang   if (flg) {
709566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A,B,fill,C));
714222ddf1SHong Zhang     PetscFunctionReturn(0);
724222ddf1SHong Zhang   }
734222ddf1SHong Zhang #endif
744222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Mat Product Algorithm is not supported");
752499ec78SHong Zhang }
762499ec78SHong Zhang 
776718818eSStefano Zampini PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
78598bc09dSHong Zhang {
796718818eSStefano Zampini   Mat_APMPI      *ptap = (Mat_APMPI*)data;
80598bc09dSHong Zhang 
81598bc09dSHong Zhang   PetscFunctionBegin;
829566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s,ptap->startsj_r));
839566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
869566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
909566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
91598bc09dSHong Zhang   PetscFunctionReturn(0);
92598bc09dSHong Zhang }
93598bc09dSHong Zhang 
94f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,Mat C)
95598bc09dSHong Zhang {
964ae0847bSHong Zhang   Mat_MPIAIJ        *a  =(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
97598bc09dSHong Zhang   Mat_SeqAIJ        *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
98598bc09dSHong Zhang   Mat_SeqAIJ        *cd =(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
99c12557a1SHong Zhang   PetscScalar       *cda=cd->a,*coa=co->a;
100598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
1019ce11a7cSHong Zhang   PetscScalar       *apa,*ca;
102c12557a1SHong Zhang   PetscInt          cm =C->rmap->n;
1036718818eSStefano Zampini   Mat_APMPI         *ptap;
104c12557a1SHong Zhang   PetscInt          *api,*apj,*apJ,i,k;
10529825010SHong Zhang   PetscInt          cstart=C->cmap->rstart;
106598bc09dSHong Zhang   PetscInt          cdnz,conz,k0,k1;
107ce496241SStefano Zampini   const PetscScalar *dummy;
1089467f45fSHong Zhang   MPI_Comm          comm;
1099467f45fSHong Zhang   PetscMPIInt       size;
110598bc09dSHong Zhang 
111598bc09dSHong Zhang   PetscFunctionBegin;
1126718818eSStefano Zampini   MatCheckProduct(C,3);
1136718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
11428b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
1159566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
1169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
117aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
11880da8df7SHong Zhang 
11965e4b4d4SStefano Zampini   /* flag CPU mask for C */
12065e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12165e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12465e4b4d4SStefano Zampini #endif
12565e4b4d4SStefano Zampini 
126a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
127598bc09dSHong Zhang   /*-----------------------------------------------------*/
128a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1299566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
1309566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc));
131598bc09dSHong Zhang 
132598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
133598bc09dSHong Zhang   /*----------------------------------------------------------*/
134598bc09dSHong Zhang   /* get data from symbolic products */
135a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
136c12557a1SHong Zhang   p_oth = NULL;
1379467f45fSHong Zhang   if (size >1) {
1389467f45fSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
1399467f45fSHong Zhang   }
140598bc09dSHong Zhang 
141598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
142598bc09dSHong Zhang   apa = ptap->apa;
143598bc09dSHong Zhang 
14429825010SHong Zhang   api = ptap->api;
14529825010SHong Zhang   apj = ptap->apj;
146ce496241SStefano Zampini   /* trigger copy to CPU */
1479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A,&dummy));
1489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A,&dummy));
1499566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B,&dummy));
1509566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B,&dummy));
151598bc09dSHong Zhang   for (i=0; i<cm; i++) {
152c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
153e497d3c8SHong Zhang     AProw_nonscalable(i,ad,ao,p_loc,p_oth,apa);
154598bc09dSHong Zhang 
155598bc09dSHong Zhang     /* set values in C */
156598bc09dSHong Zhang     apJ  = apj + api[i];
157598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
158598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
159598bc09dSHong Zhang 
160910cf402Sprj-     /* 1st off-diagonal part of C */
161598bc09dSHong Zhang     ca = coa + co->i[i];
162598bc09dSHong Zhang     k  = 0;
163598bc09dSHong Zhang     for (k0=0; k0<conz; k0++) {
164598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
165598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1665cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
167598bc09dSHong Zhang     }
168598bc09dSHong Zhang 
169598bc09dSHong Zhang     /* diagonal part of C */
170598bc09dSHong Zhang     ca = cda + cd->i[i];
171598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++) {
172598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
1735cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
174598bc09dSHong Zhang     }
175598bc09dSHong Zhang 
176910cf402Sprj-     /* 2nd off-diagonal part of C */
177598bc09dSHong Zhang     ca = coa + co->i[i];
178598bc09dSHong Zhang     for (; k0<conz; k0++) {
179598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1805cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
181598bc09dSHong Zhang     }
182598bc09dSHong Zhang   }
1839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
1849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
185598bc09dSHong Zhang   PetscFunctionReturn(0);
186598bc09dSHong Zhang }
187598bc09dSHong Zhang 
1884222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,PetscReal fill,Mat C)
189598bc09dSHong Zhang {
190ce94432eSBarry Smith   MPI_Comm           comm;
1919467f45fSHong Zhang   PetscMPIInt        size;
1923cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1930298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
1946718818eSStefano Zampini   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
195bfcd1a73SHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
1967dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
1974ae0847bSHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
198d14fa243SHong Zhang   PetscInt           *lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi;
1995cab4f04SHong Zhang   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
200598bc09dSHong Zhang   PetscBT            lnkbt;
201bfcd1a73SHong Zhang   PetscReal          afill;
202b92f168fSBarry Smith   MatType            mtype;
203598bc09dSHong Zhang 
204598bc09dSHong Zhang   PetscFunctionBegin;
2056718818eSStefano Zampini   MatCheckProduct(C,4);
20628b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
2079566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
2089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
2099467f45fSHong Zhang 
2103cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
2119566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
212598bc09dSHong Zhang 
213598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2149566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
21519f0e57aSHong Zhang 
216598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2179566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
218598bc09dSHong Zhang 
219a1a4e84aSHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
220598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
2219467f45fSHong Zhang   if (size > 1) {
2229467f45fSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
223598bc09dSHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
22420e3dc75SHong Zhang   } else {
22520e3dc75SHong Zhang     p_oth = NULL;
22620e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
2279467f45fSHong Zhang   }
228598bc09dSHong Zhang 
229598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
230598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
2319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
232a1a4e84aSHong Zhang   ptap->api = api;
233598bc09dSHong Zhang   api[0]    = 0;
234598bc09dSHong Zhang 
2355cab4f04SHong Zhang   /* create and initialize a linked list */
2369566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt));
237598bc09dSHong Zhang 
238bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2399566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space));
240598bc09dSHong Zhang   current_space = free_space;
241598bc09dSHong Zhang 
242d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
243598bc09dSHong Zhang   for (i=0; i<am; i++) {
244598bc09dSHong Zhang     /* diagonal portion of A */
245598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
246598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
247598bc09dSHong Zhang       row  = *adj++;
248598bc09dSHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
249598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
250598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2519566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt));
252598bc09dSHong Zhang     }
253598bc09dSHong Zhang     /* off-diagonal portion of A */
254598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
255598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
256598bc09dSHong Zhang       row  = *aoj++;
257598bc09dSHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
258598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2599566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt));
260598bc09dSHong Zhang     }
2618c78258cSHong Zhang     /* add possible missing diagonal entry */
2628c78258cSHong Zhang     if (C->force_diagonals) {
2638c78258cSHong Zhang       j = i + rstart; /* column index */
2649566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1,&j,lnk,lnkbt));
2658c78258cSHong Zhang     }
266598bc09dSHong Zhang 
267d14fa243SHong Zhang     apnz     = lnk[0];
268598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
269598bc09dSHong Zhang 
270598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
271598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
2729566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space));
273598bc09dSHong Zhang       nspacedouble++;
274598bc09dSHong Zhang     }
275598bc09dSHong Zhang 
276598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2779566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN,apnz,current_space->array,lnk,lnkbt));
2789566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz));
2792205254eSKarl Rupp 
280598bc09dSHong Zhang     current_space->array           += apnz;
281598bc09dSHong Zhang     current_space->local_used      += apnz;
282598bc09dSHong Zhang     current_space->local_remaining -= apnz;
283598bc09dSHong Zhang   }
284598bc09dSHong Zhang 
285598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
286598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
2879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am]+1,&ptap->apj));
288a1a4e84aSHong Zhang   apj  = ptap->apj;
2899566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,ptap->apj));
2909566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
291598bc09dSHong Zhang 
292f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2939566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN,&ptap->apa));
294f84c536bSHong Zhang 
2954222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2964222ddf1SHong Zhang   /*---------------------------------------------*/
2979566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
2989566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
299a2f3521dSMark F. Adams 
3009566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
3019566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
3029566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
303d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
30417f75172Sandi selinger 
3059566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
3069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
3079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
3089566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
309598bc09dSHong Zhang 
3104222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3114222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
312598bc09dSHong Zhang 
3134222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3146718818eSStefano Zampini   C->product->data    = ptap;
3156718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
316598bc09dSHong Zhang 
317bfcd1a73SHong Zhang   /* set MatInfo */
318118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
319bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3204222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3214222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3224222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
323bfcd1a73SHong Zhang 
324bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
325bfcd1a73SHong Zhang   if (api[am]) {
3269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
3279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
328bfcd1a73SHong Zhang   } else {
3299566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
330bfcd1a73SHong Zhang   }
331bfcd1a73SHong Zhang #endif
332598bc09dSHong Zhang   PetscFunctionReturn(0);
333598bc09dSHong Zhang }
334598bc09dSHong Zhang 
3354222ddf1SHong Zhang /* ------------------------------------------------------- */
3366718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat,Mat,PetscReal,Mat);
3376718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat,Mat,Mat);
3386718818eSStefano Zampini 
3394222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
3409123193aSHong Zhang {
3414222ddf1SHong Zhang   Mat_Product *product = C->product;
3424222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3439123193aSHong Zhang 
3449123193aSHong Zhang   PetscFunctionBegin;
3454222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
34698921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
3474222ddf1SHong Zhang 
3484222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3494222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3509123193aSHong Zhang   PetscFunctionReturn(0);
3519123193aSHong Zhang }
3524222ddf1SHong Zhang /* -------------------------------------------------------------------- */
3534222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
3544222ddf1SHong Zhang {
3554222ddf1SHong Zhang   Mat_Product *product = C->product;
3564222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3574222ddf1SHong Zhang 
3584222ddf1SHong Zhang   PetscFunctionBegin;
3594222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
36098921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
3614222ddf1SHong Zhang 
3624222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3634222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3644222ddf1SHong Zhang   PetscFunctionReturn(0);
3654222ddf1SHong Zhang }
3664222ddf1SHong Zhang 
3674222ddf1SHong Zhang /* --------------------------------------------------------------------- */
3684222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
3694222ddf1SHong Zhang {
3704222ddf1SHong Zhang   Mat_Product    *product = C->product;
3714222ddf1SHong Zhang 
3724222ddf1SHong Zhang   PetscFunctionBegin;
3734222ddf1SHong Zhang   switch (product->type) {
3744222ddf1SHong Zhang   case MATPRODUCT_AB:
3759566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
3764222ddf1SHong Zhang     break;
3774222ddf1SHong Zhang   case MATPRODUCT_AtB:
3789566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
3794222ddf1SHong Zhang     break;
3804222ddf1SHong Zhang   default:
3816718818eSStefano Zampini     break;
3824222ddf1SHong Zhang   }
3834222ddf1SHong Zhang   PetscFunctionReturn(0);
3844222ddf1SHong Zhang }
3854222ddf1SHong Zhang /* ------------------------------------------------------- */
3869123193aSHong Zhang 
3874324174eSBarry Smith typedef struct {
3885ea7661aSPierre Jolivet   Mat          workB,workB1;
3894324174eSBarry Smith   MPI_Request  *rwaits,*swaits;
39087753ddeSHong Zhang   PetscInt     nsends,nrecvs;
39187753ddeSHong Zhang   MPI_Datatype *stype,*rtype;
3926718818eSStefano Zampini   PetscInt     blda;
3934324174eSBarry Smith } MPIAIJ_MPIDense;
3944324174eSBarry Smith 
39596b95a6bSBarry Smith PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
3964324174eSBarry Smith {
3974324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*)ctx;
39887753ddeSHong Zhang   PetscInt        i;
3994324174eSBarry Smith 
4004324174eSBarry Smith   PetscFunctionBegin;
4019566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
4029566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
40387753ddeSHong Zhang   for (i=0; i<contents->nsends; i++) {
4049566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&contents->stype[i]));
40587753ddeSHong Zhang   }
40687753ddeSHong Zhang   for (i=0; i<contents->nrecvs; i++) {
4079566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
40887753ddeSHong Zhang   }
4099566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype,contents->rtype,contents->rwaits,contents->swaits));
4109566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4114324174eSBarry Smith   PetscFunctionReturn(0);
4124324174eSBarry Smith }
4134324174eSBarry Smith 
4146718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
4159123193aSHong Zhang {
416f32d5d43SBarry Smith   Mat_MPIAIJ      *aij=(Mat_MPIAIJ*)A->data;
417b45e3bf4SStefano Zampini   PetscInt        nz=aij->B->cmap->n,nsends,nrecvs,i,nrows_to,j,blda,m,M,n,N;
4184324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4194324174eSBarry Smith   VecScatter      ctx=aij->Mvctx;
4205ea7661aSPierre Jolivet   PetscInt        Am=A->rmap->n,Bm=B->rmap->n,BN=B->cmap->N,Bbn,Bbn1,bs,nrows_from,numBb;
42187753ddeSHong Zhang   MPI_Comm        comm;
42287753ddeSHong Zhang   MPI_Datatype    type1,*stype,*rtype;
42387753ddeSHong Zhang   const PetscInt  *sindices,*sstarts,*rstarts;
42487753ddeSHong Zhang   PetscMPIInt     *disp;
4256718818eSStefano Zampini   PetscBool       cisdense;
4269123193aSHong Zhang 
4279123193aSHong Zhang   PetscFunctionBegin;
4286718818eSStefano Zampini   MatCheckProduct(C,4);
42928b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
4309566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
4319566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C,MATMPIDENSE,&cisdense));
4326718818eSStefano Zampini   if (!cisdense) {
4339566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,((PetscObject)B)->type_name));
4346718818eSStefano Zampini   }
4359566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C,&m,&n));
4369566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C,&M,&N));
437825bfe5fSPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) {
4389566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(C,Am,B->cmap->n,A->rmap->N,BN));
439825bfe5fSPierre Jolivet   }
4409566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
4419566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4429566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&blda));
4439566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4444324174eSBarry Smith 
4459566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL));
4469566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL));
44787753ddeSHong Zhang 
44887753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
44987753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
45087753ddeSHong Zhang   if (nz) {
45187753ddeSHong Zhang     Bbn1 = 2*Am*BN/nz;
452da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
45387753ddeSHong Zhang   } else Bbn1 = BN;
45487753ddeSHong Zhang 
45587753ddeSHong Zhang   bs = PetscAbs(B->cmap->bs);
45687753ddeSHong Zhang   Bbn1 = Bbn1/bs *bs; /* Bbn1 is a multiple of bs */
45787753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
4589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&Bbn1,&Bbn,1,MPIU_INT,MPI_MAX,comm));
45987753ddeSHong Zhang 
46087753ddeSHong Zhang   /* Enable runtime option for Bbn */
461d0609cedSBarry Smith   PetscOptionsBegin(comm,((PetscObject)C)->prefix,"MatMatMult","Mat");
4629566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn","Number of columns in Bb","MatMatMult",Bbn,&Bbn,NULL));
463d0609cedSBarry Smith   PetscOptionsEnd();
4646718818eSStefano Zampini   Bbn  = PetscMin(Bbn,BN);
46587753ddeSHong Zhang 
4666718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4675ea7661aSPierre Jolivet     numBb = BN/Bbn;
4685ea7661aSPierre Jolivet     Bbn1 = BN - numBb*Bbn;
4695ea7661aSPierre Jolivet   } else numBb = 0;
47087753ddeSHong Zhang 
4715ea7661aSPierre Jolivet   if (numBb) {
4729566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n",BN,Bbn,numBb));
4735ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4749566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C,"use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n",BN,Bbn1));
47587753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4769566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn1,NULL,&contents->workB1));
4775ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
47887753ddeSHong Zhang   }
47987753ddeSHong Zhang 
48087753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4819566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn,NULL,&contents->workB));
48287753ddeSHong Zhang 
48387753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends,&stype,nrecvs,&rtype,nrecvs,&contents->rwaits,nsends,&contents->swaits));
48587753ddeSHong Zhang   contents->stype  = stype;
48687753ddeSHong Zhang   contents->nsends = nsends;
48787753ddeSHong Zhang 
48887753ddeSHong Zhang   contents->rtype  = rtype;
48987753ddeSHong Zhang   contents->nrecvs = nrecvs;
4906718818eSStefano Zampini   contents->blda   = blda;
49187753ddeSHong Zhang 
4929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm+1,&disp));
49387753ddeSHong Zhang   for (i=0; i<nsends; i++) {
49487753ddeSHong Zhang     nrows_to = sstarts[i+1]-sstarts[i];
495b45e3bf4SStefano Zampini     for (j=0; j<nrows_to; j++) disp[j] = sindices[sstarts[i]+j]; /* rowB to be sent */
4969566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to,1,disp,MPIU_SCALAR,&type1));
4979566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1,0,blda*sizeof(PetscScalar),&stype[i]));
4989566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
50087753ddeSHong Zhang   }
50187753ddeSHong Zhang 
50287753ddeSHong Zhang   for (i=0; i<nrecvs; i++) {
50387753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
50487753ddeSHong Zhang     nrows_from = rstarts[i+1]-rstarts[i];
50587753ddeSHong Zhang     disp[0] = 0;
5069566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1,nrows_from,disp,MPIU_SCALAR,&type1));
5079566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1,0,nz*sizeof(PetscScalar),&rtype[i]));
5089566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
5099566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
51087753ddeSHong Zhang   }
51187753ddeSHong Zhang 
5129566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
5139566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL));
5149566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL));
5159566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
5169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
5179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
5189566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
5196718818eSStefano Zampini 
5206718818eSStefano Zampini   C->product->data = contents;
5216718818eSStefano Zampini   C->product->destroy = MatMPIAIJ_MPIDenseDestroy;
5224222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5239123193aSHong Zhang   PetscFunctionReturn(0);
5249123193aSHong Zhang }
5259123193aSHong Zhang 
52693aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat,const PetscBool);
527f32d5d43SBarry Smith /*
5282636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5292636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
53087753ddeSHong Zhang 
53187753ddeSHong Zhang     Input: Bbidx = 0: B = Bb
53287753ddeSHong Zhang                  = 1: B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
533f32d5d43SBarry Smith */
53487753ddeSHong Zhang PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,PetscInt Bbidx,Mat C,Mat *outworkB)
535f32d5d43SBarry Smith {
536f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)A->data;
5371683a169SBarry Smith   const PetscScalar *b;
53887753ddeSHong Zhang   PetscScalar       *rvalues;
539f32d5d43SBarry Smith   VecScatter        ctx = aij->Mvctx;
54087753ddeSHong Zhang   const PetscInt    *sindices,*sstarts,*rstarts;
5413515ee7fSJunchao Zhang   const PetscMPIInt *sprocs,*rprocs;
5426718818eSStefano Zampini   PetscInt          i,nsends,nrecvs;
543f32d5d43SBarry Smith   MPI_Request       *swaits,*rwaits;
544ce94432eSBarry Smith   MPI_Comm          comm;
5456718818eSStefano Zampini   PetscMPIInt       tag=((PetscObject)ctx)->tag,ncols=B->cmap->N,nrows=aij->B->cmap->n,nsends_mpi,nrecvs_mpi;
5464324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5474324174eSBarry Smith   Mat               workB;
54887753ddeSHong Zhang   MPI_Datatype      *stype,*rtype;
5496718818eSStefano Zampini   PetscInt          blda;
550f32d5d43SBarry Smith 
551f32d5d43SBarry Smith   PetscFunctionBegin;
5526718818eSStefano Zampini   MatCheckProduct(C,4);
55328b400f6SJacob Faibussowitsch   PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
5546718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
5559566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL/*bs*/));
5569566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL/*bs*/));
5579566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends,&nsends_mpi));
5589566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs,&nrecvs_mpi));
559b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
560b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
56108401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d",workB->cmap->n,nrows);
5623515ee7fSJunchao Zhang   swaits = contents->swaits;
5633515ee7fSJunchao Zhang   rwaits = contents->rwaits;
564f32d5d43SBarry Smith 
5659566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B,&b));
5669566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&blda));
56708401ef6SPierre Jolivet   PetscCheck(blda == contents->blda,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT,blda,contents->blda);
5689566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB,&rvalues));
569f32d5d43SBarry Smith 
57087753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
57287753ddeSHong Zhang   rtype = contents->rtype;
5733515ee7fSJunchao Zhang   for (i=0; i<nrecvs; i++) {
5749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(rvalues+(rstarts[i]-rstarts[0]),ncols,rtype[i],rprocs[i],tag,comm,rwaits+i));
575f32d5d43SBarry Smith   }
576f32d5d43SBarry Smith 
57787753ddeSHong Zhang   stype = contents->stype;
5783515ee7fSJunchao Zhang   for (i=0; i<nsends; i++) {
5799566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(b,ncols,stype[i],sprocs[i],tag,comm,swaits+i));
580f32d5d43SBarry Smith   }
5812636ff26SBarry Smith 
5829566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi,rwaits,MPI_STATUSES_IGNORE));
5839566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi,swaits,MPI_STATUSES_IGNORE));
584f32d5d43SBarry Smith 
5859566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL));
5869566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL));
5879566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B,&b));
5889566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB,&rvalues));
58987753ddeSHong Zhang   PetscFunctionReturn(0);
59087753ddeSHong Zhang }
591f32d5d43SBarry Smith 
5926718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
5939123193aSHong Zhang {
594f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ*)A->data;
595f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense*)B->data;
596f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense*)C->data;
597f32d5d43SBarry Smith   Mat             workB;
59887753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5999123193aSHong Zhang 
6009123193aSHong Zhang   PetscFunctionBegin;
6016718818eSStefano Zampini   MatCheckProduct(C,3);
60228b400f6SJacob Faibussowitsch   PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
6036718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
604f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
6055ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
6069566063dSJacob Faibussowitsch   PetscCall(MatMatMult(aij->A,bdense->A,MAT_REUSE_MATRIX,PETSC_DEFAULT,&cdense->A));
6075ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
60887753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
6099566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A,B,0,C,&workB));
610f32d5d43SBarry Smith 
611f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
6129566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE));
61387753ddeSHong Zhang   } else {
6145ea7661aSPierre Jolivet     Mat       Bb,Cb;
6155ea7661aSPierre Jolivet     PetscInt  BN=B->cmap->N,n=contents->workB->cmap->n,i;
616664c1e85SStefano Zampini     PetscBool ccpu;
61787753ddeSHong Zhang 
61808401ef6SPierre Jolivet     PetscCheck(n > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Column block size %" PetscInt_FMT " must be positive",n);
619664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
620664c1e85SStefano Zampini        when getting and restoring the submatrix
621664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6229566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C,&ccpu));
6239566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C,PETSC_TRUE));
6245ea7661aSPierre Jolivet     for (i=0; i<BN; i+=n) {
625a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B,PETSC_DECIDE,PETSC_DECIDE,i,PetscMin(i+n,BN),&Bb));
626a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C,PETSC_DECIDE,PETSC_DECIDE,i,PetscMin(i+n,BN),&Cb));
62787753ddeSHong Zhang 
6285ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6299566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A,Bb,(i+n)>BN,C,&workB));
6305ea7661aSPierre Jolivet 
6315ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6325ea7661aSPierre Jolivet       cdense = (Mat_MPIDense*)Cb->data;
6339566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE));
6349566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B,&Bb));
6359566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C,&Cb));
63687753ddeSHong Zhang     }
6379566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C,ccpu));
63887753ddeSHong Zhang   }
6399123193aSHong Zhang   PetscFunctionReturn(0);
6409123193aSHong Zhang }
641cf1a0672SHong Zhang 
642f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)
6431634b032SHong Zhang {
644cf1a0672SHong Zhang   Mat_MPIAIJ        *a   = (Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
645cf1a0672SHong Zhang   Mat_SeqAIJ        *ad  = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
646cf1a0672SHong Zhang   Mat_SeqAIJ        *cd  = (Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
647cf1a0672SHong Zhang   PetscInt          *adi = ad->i,*adj,*aoi=ao->i,*aoj;
648cf1a0672SHong Zhang   PetscScalar       *ada,*aoa,*cda=cd->a,*coa=co->a;
649cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
650cf1a0672SHong Zhang   PetscInt          *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
65129825010SHong Zhang   PetscScalar       *pa_loc,*pa_oth,*pa,valtmp,*ca;
65229825010SHong Zhang   PetscInt          cm    = C->rmap->n,anz,pnz;
6536718818eSStefano Zampini   Mat_APMPI         *ptap;
65480da8df7SHong Zhang   PetscScalar       *apa_sparse;
655ce496241SStefano Zampini   const PetscScalar *dummy;
656cf1a0672SHong Zhang   PetscInt          *api,*apj,*apJ,i,j,k,row;
65729825010SHong Zhang   PetscInt          cstart = C->cmap->rstart;
65829825010SHong Zhang   PetscInt          cdnz,conz,k0,k1,nextp;
659a7c7454dSHong Zhang   MPI_Comm          comm;
660a7c7454dSHong Zhang   PetscMPIInt       size;
6611634b032SHong Zhang 
6621634b032SHong Zhang   PetscFunctionBegin;
6636718818eSStefano Zampini   MatCheckProduct(C,3);
6646718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
66528b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
6669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
6679566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
668aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
669a7c7454dSHong Zhang 
67065e4b4d4SStefano Zampini   /* flag CPU mask for C */
67165e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
67265e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
67365e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
67465e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
67565e4b4d4SStefano Zampini #endif
67680da8df7SHong Zhang   apa_sparse = ptap->apa;
67780da8df7SHong Zhang 
678cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
679cf1a0672SHong Zhang   /*-----------------------------------------------------*/
680cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6819566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
6829566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc));
683cf1a0672SHong Zhang 
684cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
685cf1a0672SHong Zhang   /*----------------------------------------------------------*/
686cf1a0672SHong Zhang   /* get data from symbolic products */
687cf1a0672SHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
688cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j; pa_loc = p_loc->a;
689a7c7454dSHong Zhang   if (size >1) {
690a7c7454dSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
691cf1a0672SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j; pa_oth = p_oth->a;
69220e3dc75SHong Zhang   } else {
69320e3dc75SHong Zhang     p_oth = NULL; pi_oth = NULL; pj_oth = NULL; pa_oth = NULL;
694a7c7454dSHong Zhang   }
695cf1a0672SHong Zhang 
696ce496241SStefano Zampini   /* trigger copy to CPU */
6979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A,&dummy));
6989566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A,&dummy));
6999566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B,&dummy));
7009566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B,&dummy));
70129825010SHong Zhang   api = ptap->api;
70229825010SHong Zhang   apj = ptap->apj;
703cf1a0672SHong Zhang   for (i=0; i<cm; i++) {
70429825010SHong Zhang     apJ = apj + api[i];
70529825010SHong Zhang 
706cf1a0672SHong Zhang     /* diagonal portion of A */
707cf1a0672SHong Zhang     anz = adi[i+1] - adi[i];
708cf1a0672SHong Zhang     adj = ad->j + adi[i];
709cf1a0672SHong Zhang     ada = ad->a + adi[i];
710cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
711cf1a0672SHong Zhang       row = adj[j];
712cf1a0672SHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
713cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
714cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
71529825010SHong Zhang       /* perform sparse axpy */
716cf1a0672SHong Zhang       valtmp = ada[j];
71729825010SHong Zhang       nextp  = 0;
71829825010SHong Zhang       for (k=0; nextp<pnz; k++) {
71929825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
72029825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
72129825010SHong Zhang         }
7221634b032SHong Zhang       }
7239566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*pnz));
724cf1a0672SHong Zhang     }
7251634b032SHong Zhang 
726cf1a0672SHong Zhang     /* off-diagonal portion of A */
727cf1a0672SHong Zhang     anz = aoi[i+1] - aoi[i];
728cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
729cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
730cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
731cf1a0672SHong Zhang       row = aoj[j];
732cf1a0672SHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
733cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
734cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
73529825010SHong Zhang       /* perform sparse axpy */
736cf1a0672SHong Zhang       valtmp = aoa[j];
73729825010SHong Zhang       nextp  = 0;
73829825010SHong Zhang       for (k=0; nextp<pnz; k++) {
73929825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
74029825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
74129825010SHong Zhang         }
742cf1a0672SHong Zhang       }
7439566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*pnz));
744cf1a0672SHong Zhang     }
7451634b032SHong Zhang 
746cf1a0672SHong Zhang     /* set values in C */
747cf1a0672SHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
748cf1a0672SHong Zhang     conz = co->i[i+1] - co->i[i];
7491634b032SHong Zhang 
750910cf402Sprj-     /* 1st off-diagonal part of C */
751cf1a0672SHong Zhang     ca = coa + co->i[i];
752cf1a0672SHong Zhang     k  = 0;
753cf1a0672SHong Zhang     for (k0=0; k0<conz; k0++) {
754cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
75529825010SHong Zhang       ca[k0]        = apa_sparse[k];
75629825010SHong Zhang       apa_sparse[k] = 0.0;
757cf1a0672SHong Zhang       k++;
758cf1a0672SHong Zhang     }
7591634b032SHong Zhang 
760cf1a0672SHong Zhang     /* diagonal part of C */
761cf1a0672SHong Zhang     ca = cda + cd->i[i];
762cf1a0672SHong Zhang     for (k1=0; k1<cdnz; k1++) {
76329825010SHong Zhang       ca[k1]        = apa_sparse[k];
76429825010SHong Zhang       apa_sparse[k] = 0.0;
765cf1a0672SHong Zhang       k++;
766cf1a0672SHong Zhang     }
767cf1a0672SHong Zhang 
768910cf402Sprj-     /* 2nd off-diagonal part of C */
769cf1a0672SHong Zhang     ca = coa + co->i[i];
770cf1a0672SHong Zhang     for (; k0<conz; k0++) {
77129825010SHong Zhang       ca[k0]        = apa_sparse[k];
77229825010SHong Zhang       apa_sparse[k] = 0.0;
773cf1a0672SHong Zhang       k++;
774cf1a0672SHong Zhang     }
775cf1a0672SHong Zhang   }
7769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
7779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
778cf1a0672SHong Zhang   PetscFunctionReturn(0);
779cf1a0672SHong Zhang }
780cf1a0672SHong Zhang 
7810fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
7824222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat C)
783cf1a0672SHong Zhang {
784ce94432eSBarry Smith   MPI_Comm           comm;
785a7c7454dSHong Zhang   PetscMPIInt        size;
7863cdca5ebSHong Zhang   Mat_APMPI          *ptap;
7870298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL,current_space=NULL;
7886718818eSStefano Zampini   Mat_MPIAIJ         *a  = (Mat_MPIAIJ*)A->data;
789cf1a0672SHong Zhang   Mat_SeqAIJ         *ad = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
7907dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
791cf1a0672SHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
7928c78258cSHong Zhang   PetscInt           i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi,*lnk,apnz_max=1;
793e5ab8c0aSKarl Rupp   PetscInt           am=A->rmap->n,pn=P->cmap->n,pm=P->rmap->n,lsize=pn+20;
794cf1a0672SHong Zhang   PetscReal          afill;
795b92f168fSBarry Smith   MatType            mtype;
796cf1a0672SHong Zhang 
797cf1a0672SHong Zhang   PetscFunctionBegin;
7986718818eSStefano Zampini   MatCheckProduct(C,4);
79928b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
8009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
8019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
802a7c7454dSHong Zhang 
8033cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
8049566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
805cf1a0672SHong Zhang 
806cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
8079566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
80819f0e57aSHong Zhang 
809cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
8109566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
811cf1a0672SHong Zhang 
812cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
813cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
814a7c7454dSHong Zhang   if (size > 1) {
815a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
81620e3dc75SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
817968382fdSHong Zhang   } else {
81820e3dc75SHong Zhang     p_oth  = NULL;
81920e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
820a7c7454dSHong Zhang   }
821cf1a0672SHong Zhang 
822cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
823cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
8249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
825cf1a0672SHong Zhang   ptap->api = api;
826cf1a0672SHong Zhang   api[0]    = 0;
827cf1a0672SHong Zhang 
8289566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize,&lnk));
829cf1a0672SHong Zhang 
830cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8319566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space));
832cf1a0672SHong Zhang   current_space = free_space;
833d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
834cf1a0672SHong Zhang   for (i=0; i<am; i++) {
835cf1a0672SHong Zhang     /* diagonal portion of A */
836cf1a0672SHong Zhang     nzi = adi[i+1] - adi[i];
837cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
838cf1a0672SHong Zhang       row  = *adj++;
839cf1a0672SHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
840cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8418a210135Sandi selinger       /* Expand list if it is not long enough */
8428328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8438328dd82Sandi selinger         lsize = pnz+apnz_max;
8449566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8458a210135Sandi selinger       }
846cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8479566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk));
8488a210135Sandi selinger       apnz     = *lnk; /* The first element in the list is the number of items in the list */
8498a210135Sandi selinger       api[i+1] = api[i] + apnz;
8508c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
851cf1a0672SHong Zhang     }
852cf1a0672SHong Zhang     /* off-diagonal portion of A */
853cf1a0672SHong Zhang     nzi = aoi[i+1] - aoi[i];
854cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
855cf1a0672SHong Zhang       row  = *aoj++;
856cf1a0672SHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
857cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8588a210135Sandi selinger       /* Expand list if it is not long enough */
8598328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8608328dd82Sandi selinger         lsize = pnz + apnz_max;
8619566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8628a210135Sandi selinger       }
8638a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8649566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk));
8658a210135Sandi selinger       apnz     = *lnk;  /* The first element in the list is the number of items in the list */
8668a210135Sandi selinger       api[i+1] = api[i] + apnz;
8678c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
868cf1a0672SHong Zhang     }
8698c78258cSHong Zhang 
8708c78258cSHong Zhang     /* add missing diagonal entry */
8718c78258cSHong Zhang     if (C->force_diagonals) {
8728c78258cSHong Zhang       j = i + rstart; /* column index */
8739566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1,&j,lnk));
8748c78258cSHong Zhang     }
8758c78258cSHong Zhang 
876f84c536bSHong Zhang     apnz     = *lnk;
877cf1a0672SHong Zhang     api[i+1] = api[i] + apnz;
8788a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
879cf1a0672SHong Zhang 
880cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
881cf1a0672SHong Zhang     if (current_space->local_remaining<apnz) {
8829566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space));
883cf1a0672SHong Zhang       nspacedouble++;
884cf1a0672SHong Zhang     }
885cf1a0672SHong Zhang 
886cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8879566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz,current_space->array,lnk));
8889566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz));
8892205254eSKarl Rupp 
890cf1a0672SHong Zhang     current_space->array           += apnz;
891cf1a0672SHong Zhang     current_space->local_used      += apnz;
892cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
893cf1a0672SHong Zhang   }
894cf1a0672SHong Zhang 
895cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
896cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
8979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am]+1,&ptap->apj));
898cf1a0672SHong Zhang   apj  = ptap->apj;
8999566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,ptap->apj));
9009566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
901cf1a0672SHong Zhang 
9024222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
903cf1a0672SHong Zhang   /*----------------------------------------------------*/
9049566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
9059566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
9069566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
9079566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
9089566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
909d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
910cf1a0672SHong Zhang 
9114222ddf1SHong Zhang   /* malloc apa for assembly C */
9129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max,&ptap->apa));
91317f75172Sandi selinger 
9149566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
9159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
9169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
9179566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
918cf1a0672SHong Zhang 
9194222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9204222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
921cf1a0672SHong Zhang 
9224222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9236718818eSStefano Zampini   C->product->data    = ptap;
9246718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
925cf1a0672SHong Zhang 
926cf1a0672SHong Zhang   /* set MatInfo */
927118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
928cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9294222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9304222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9314222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
932cf1a0672SHong Zhang 
933cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
934cf1a0672SHong Zhang   if (api[am]) {
9359566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
9369566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
937cf1a0672SHong Zhang   } else {
9389566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
939cf1a0672SHong Zhang   }
940cf1a0672SHong Zhang #endif
9411634b032SHong Zhang   PetscFunctionReturn(0);
9421634b032SHong Zhang }
943f96d37fcSHong Zhang 
944a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
945a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
946a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
947a9d7e0ccSandi selinger static void Merge3SortedArrays(PetscInt  size1, PetscInt *in1,
948a9d7e0ccSandi selinger                                PetscInt  size2, PetscInt *in2,
949a9d7e0ccSandi selinger                                PetscInt  size3, PetscInt *in3,
950a9d7e0ccSandi selinger                                PetscInt *size4, PetscInt *out)
951a9d7e0ccSandi selinger {
952a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
953a9d7e0ccSandi selinger 
954a9d7e0ccSandi selinger   /* Traverse all three arrays */
955a9d7e0ccSandi selinger   while (i<size1 && j<size2 && k<size3) {
956a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
957a9d7e0ccSandi selinger       out[l++] = in1[i++];
958a9d7e0ccSandi selinger     }
959a9d7e0ccSandi selinger     else if (in2[j] < in1[i] && in2[j] < in3[k]) {
960a9d7e0ccSandi selinger       out[l++] = in2[j++];
961a9d7e0ccSandi selinger     }
962a9d7e0ccSandi selinger     else if (in3[k] < in1[i] && in3[k] < in2[j]) {
963a9d7e0ccSandi selinger       out[l++] = in3[k++];
964a9d7e0ccSandi selinger     }
965a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] < in3[k]) {
966a9d7e0ccSandi selinger       out[l++] = in1[i];
967a9d7e0ccSandi selinger       i++, j++;
968a9d7e0ccSandi selinger     }
969a9d7e0ccSandi selinger     else if (in1[i] == in3[k] && in1[i] < in2[j]) {
970a9d7e0ccSandi selinger       out[l++] = in1[i];
971a9d7e0ccSandi selinger       i++, k++;
972a9d7e0ccSandi selinger     }
973a9d7e0ccSandi selinger     else if (in3[k] == in2[j] && in2[j] < in1[i])  {
974a9d7e0ccSandi selinger       out[l++] = in2[j];
975a9d7e0ccSandi selinger       k++, j++;
976a9d7e0ccSandi selinger     }
977a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] == in3[k]) {
978a9d7e0ccSandi selinger       out[l++] = in1[i];
979a9d7e0ccSandi selinger       i++, j++, k++;
980a9d7e0ccSandi selinger     }
981a9d7e0ccSandi selinger   }
982a9d7e0ccSandi selinger 
983a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
984a9d7e0ccSandi selinger   while (i<size1 && j<size2) {
985a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
986a9d7e0ccSandi selinger       out[l++] = in1[i++];
987a9d7e0ccSandi selinger     }
988a9d7e0ccSandi selinger     else if (in1[i] > in2[j]) {
989a9d7e0ccSandi selinger       out[l++] = in2[j++];
990a9d7e0ccSandi selinger     }
991a9d7e0ccSandi selinger     else {
992a9d7e0ccSandi selinger       out[l++] = in1[i];
993a9d7e0ccSandi selinger       i++, j++;
994a9d7e0ccSandi selinger     }
995a9d7e0ccSandi selinger   }
996a9d7e0ccSandi selinger 
997a9d7e0ccSandi selinger   while (i<size1 && k<size3) {
998a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
999a9d7e0ccSandi selinger       out[l++] = in1[i++];
1000a9d7e0ccSandi selinger     }
1001a9d7e0ccSandi selinger     else if (in1[i] > in3[k]) {
1002a9d7e0ccSandi selinger       out[l++] = in3[k++];
1003a9d7e0ccSandi selinger     }
1004a9d7e0ccSandi selinger     else {
1005a9d7e0ccSandi selinger       out[l++] = in1[i];
1006a9d7e0ccSandi selinger       i++, k++;
1007a9d7e0ccSandi selinger     }
1008a9d7e0ccSandi selinger   }
1009a9d7e0ccSandi selinger 
1010a9d7e0ccSandi selinger   while (k<size3 && j<size2)  {
1011a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
1012a9d7e0ccSandi selinger       out[l++] = in3[k++];
1013a9d7e0ccSandi selinger     }
1014a9d7e0ccSandi selinger     else if (in3[k] > in2[j]) {
1015a9d7e0ccSandi selinger       out[l++] = in2[j++];
1016a9d7e0ccSandi selinger     }
1017a9d7e0ccSandi selinger     else {
1018a9d7e0ccSandi selinger       out[l++] = in3[k];
1019a9d7e0ccSandi selinger       k++, j++;
1020a9d7e0ccSandi selinger     }
1021a9d7e0ccSandi selinger   }
1022a9d7e0ccSandi selinger 
1023a9d7e0ccSandi selinger   /* Traverse one remaining array */
1024a9d7e0ccSandi selinger   while (i<size1) out[l++] = in1[i++];
1025a9d7e0ccSandi selinger   while (j<size2) out[l++] = in2[j++];
1026a9d7e0ccSandi selinger   while (k<size3) out[l++] = in3[k++];
1027a9d7e0ccSandi selinger 
1028a9d7e0ccSandi selinger   *size4 = l;
1029a9d7e0ccSandi selinger }
1030a9d7e0ccSandi selinger 
103173b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
103273b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
103373b67375Sandi selinger /* matrix-matrix multiplications.  */
10344222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1035a9d7e0ccSandi selinger {
1036a9d7e0ccSandi selinger   MPI_Comm           comm;
1037a9d7e0ccSandi selinger   PetscMPIInt        size;
10383cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1039a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag=NULL, current_space=NULL;
1040a9d7e0ccSandi selinger   Mat_MPIAIJ         *a  =(Mat_MPIAIJ*)A->data;
1041a9d7e0ccSandi selinger   Mat_SeqAIJ         *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc;
1042a9d7e0ccSandi selinger   Mat_MPIAIJ         *p  =(Mat_MPIAIJ*)P->data;
1043a9d7e0ccSandi selinger   Mat_SeqAIJ         *adpd_seq, *p_off, *aopoth_seq;
1044a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10457dbaa2c6Sandi selinger   PetscInt           *pi_loc,*dnz,*onz;
1046a9d7e0ccSandi selinger   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,rstart=A->rmap->rstart;
1047a9d7e0ccSandi selinger   PetscInt           *lnk,i, i1=0,pnz,row,*adpoi,*adpoj, *api, *adpoJ, *aopJ, *apJ,*Jptr, aopnz, nspacedouble=0,j,nzi,
1048a9d7e0ccSandi selinger                      *apj,apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1049a016958eSandi selinger   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n, p_colstart, p_colend;
1050a9d7e0ccSandi selinger   PetscBT            lnkbt;
1051a9d7e0ccSandi selinger   PetscReal          afill;
1052a9d7e0ccSandi selinger   PetscMPIInt        rank;
1053a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1054b92f168fSBarry Smith   MatType            mtype;
1055e83e5f86SFande Kong   const char         *prefix;
1056a9d7e0ccSandi selinger 
1057a9d7e0ccSandi selinger   PetscFunctionBegin;
10586718818eSStefano Zampini   MatCheckProduct(C,4);
105928b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
10609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
10619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
10629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10639566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1064a9d7e0ccSandi selinger 
10653cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
10669566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1067a9d7e0ccSandi selinger 
1068a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10699566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
1070a9d7e0ccSandi selinger 
1071a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10729566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
1073a9d7e0ccSandi selinger 
1074a9d7e0ccSandi selinger   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
1075a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1076a9d7e0ccSandi selinger 
1077a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
10789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
10799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&adpoi));
1080a9d7e0ccSandi selinger 
1081a9d7e0ccSandi selinger   adpoi[0]    = 0;
1082a9d7e0ccSandi selinger   ptap->api = api;
1083a9d7e0ccSandi selinger   api[0] = 0;
1084a9d7e0ccSandi selinger 
1085a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10869566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt));
1087d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
1088a9d7e0ccSandi selinger 
1089a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10909566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
10919566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A,p->A,NULL,&adpd));
10929566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
10939566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd,prefix));
10949566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd,"inner_diag_"));
10954222ddf1SHong Zhang 
10969566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd,MATPRODUCT_AB));
10979566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd,"sorted"));
10989566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd,fill));
10999566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
11008c78258cSHong Zhang 
11018c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
11029566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
11034222ddf1SHong Zhang 
1104a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ*)((adpd)->data);
1105a9d7e0ccSandi selinger   adpdi = adpd_seq->i; adpdj = adpd_seq->j;
1106a9d7e0ccSandi selinger   p_off = (Mat_SeqAIJ*)((p->B)->data);
1107a9d7e0ccSandi selinger   poff_i = p_off->i; poff_j = p_off->j;
1108a9d7e0ccSandi selinger 
110973b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
11109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pN+2,&j_temp));
1111a9d7e0ccSandi selinger 
1112a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1113a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
11149566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space_diag));
1115a9d7e0ccSandi selinger   current_space = free_space_diag;
1116a9d7e0ccSandi selinger 
1117a9d7e0ccSandi selinger   for (i=0; i<am; i++) {
1118a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1119a9d7e0ccSandi selinger     nzi = adi[i+1] - adi[i];
1120a9d7e0ccSandi selinger     for (j=0; j<nzi; j++) {
1121a9d7e0ccSandi selinger       row  = *adj++;
1122a9d7e0ccSandi selinger       pnz  = poff_i[row+1] - poff_i[row];
1123a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1124a9d7e0ccSandi selinger       for (i1 = 0; i1 < pnz; i1++) {
1125a9d7e0ccSandi selinger         j_temp[i1] = p->garray[Jptr[i1]];
1126a9d7e0ccSandi selinger       }
1127a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11289566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,j_temp,lnk,lnkbt));
1129a9d7e0ccSandi selinger     }
1130a9d7e0ccSandi selinger 
1131a9d7e0ccSandi selinger     adponz     = lnk[0];
1132a9d7e0ccSandi selinger     adpoi[i+1] = adpoi[i] + adponz;
1133a9d7e0ccSandi selinger 
1134a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1135a9d7e0ccSandi selinger     if (current_space->local_remaining<adponz) {
11369566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz,current_space->total_array_size),&current_space));
1137a9d7e0ccSandi selinger       nspacedouble++;
1138a9d7e0ccSandi selinger     }
1139a9d7e0ccSandi selinger 
1140a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11419566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN,adponz,current_space->array,lnk,lnkbt));
1142a9d7e0ccSandi selinger 
1143a9d7e0ccSandi selinger     current_space->array           += adponz;
1144a9d7e0ccSandi selinger     current_space->local_used      += adponz;
1145a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1146a9d7e0ccSandi selinger   }
1147a9d7e0ccSandi selinger 
1148a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11499566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B,prefix));
11509566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B,"inner_offdiag_"));
11519566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&aopoth));
11529566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1153a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ*)((aopoth)->data);
1154a9d7e0ccSandi selinger   aopothi = aopoth_seq->i; aopothj = aopoth_seq->j;
1155a9d7e0ccSandi selinger 
1156a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1157a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1158a9d7e0ccSandi selinger 
11599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am]+2, &ptap->apj));
11609566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(adpoi[am]+2, &adpoj));
1161a9d7e0ccSandi selinger 
1162a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11639566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag,adpoj));
11649566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
1165a9d7e0ccSandi selinger 
1166a9d7e0ccSandi selinger   adpoJ = adpoj;
1167a9d7e0ccSandi selinger   adpdJ = adpdj;
1168a9d7e0ccSandi selinger   aopJ = aopothj;
1169a9d7e0ccSandi selinger   apj  = ptap->apj;
1170a9d7e0ccSandi selinger   apJ = apj; /* still empty */
1171a9d7e0ccSandi selinger 
1172a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1173a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1174a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1175a9d7e0ccSandi selinger     aopnz  =  aopothi[i+1] -  aopothi[i];
1176a9d7e0ccSandi selinger     adponz = adpoi[i+1] - adpoi[i];
1177a9d7e0ccSandi selinger     adpdnz = adpdi[i+1] - adpdi[i];
1178a9d7e0ccSandi selinger 
1179a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1180a9d7e0ccSandi selinger     for (i1 = 0; i1 < adpdnz; i1++) {
1181a016958eSandi selinger       adpdJ[i1] += p_colstart;
1182a9d7e0ccSandi selinger     }
1183a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1184a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11859566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart, apnz, apJ, dnz, onz));
1186a9d7e0ccSandi selinger 
1187a9d7e0ccSandi selinger     aopJ += aopnz;
1188a9d7e0ccSandi selinger     adpoJ += adponz;
1189a9d7e0ccSandi selinger     adpdJ += adpdnz;
1190a9d7e0ccSandi selinger     apJ += apnz;
1191a9d7e0ccSandi selinger     api[i+1] = api[i] + apnz;
1192a9d7e0ccSandi selinger   }
1193a9d7e0ccSandi selinger 
1194a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
11959566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN+2,&ptap->apa));
1196a9d7e0ccSandi selinger 
11974222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
11999566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
12009566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
12019566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
12029566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
1203d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
120417f75172Sandi selinger 
12059566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
12069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
12079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
12089566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
120917f75172Sandi selinger 
12104222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
12114222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1212a9d7e0ccSandi selinger 
12134222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
12146718818eSStefano Zampini   C->product->data    = ptap;
12156718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1216a9d7e0ccSandi selinger 
1217a9d7e0ccSandi selinger   /* set MatInfo */
121873b67375Sandi selinger   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
121973b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
12204222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
12214222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
12224222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1223a9d7e0ccSandi selinger 
1224a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1225a9d7e0ccSandi selinger   if (api[am]) {
12269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
12279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
1228a9d7e0ccSandi selinger   } else {
12299566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
1230a9d7e0ccSandi selinger   }
1231a9d7e0ccSandi selinger #endif
1232a9d7e0ccSandi selinger 
12339566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12349566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12359566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12369566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12379566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
1238a9d7e0ccSandi selinger   PetscFunctionReturn(0);
1239a9d7e0ccSandi selinger }
1240a9d7e0ccSandi selinger 
1241f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/
1242c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1243c216dbf3SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P,Mat A,Mat C)
1244c216dbf3SHong Zhang {
12456718818eSStefano Zampini   Mat_APMPI      *ptap;
124660552ceaSHong Zhang   Mat            Pt;
1247c216dbf3SHong Zhang 
1248c216dbf3SHong Zhang   PetscFunctionBegin;
12496718818eSStefano Zampini   MatCheckProduct(C,3);
12506718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
125128b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
125228b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
125360552ceaSHong Zhang 
125460552ceaSHong Zhang   Pt   = ptap->Pt;
12559566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P,MAT_REUSE_MATRIX,&Pt));
12569566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt,A,C));
1257f96d37fcSHong Zhang   PetscFunctionReturn(0);
1258f96d37fcSHong Zhang }
1259f96d37fcSHong Zhang 
1260c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
12614222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,PetscReal fill,Mat C)
1262912837bbSHong Zhang {
12633cdca5ebSHong Zhang   Mat_APMPI           *ptap;
12646718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data;
1265912837bbSHong Zhang   MPI_Comm            comm;
1266912837bbSHong Zhang   PetscMPIInt         size,rank;
1267912837bbSHong Zhang   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
12684ede91e3SHong Zhang   PetscInt            pn=P->cmap->n,aN=A->cmap->N,an=A->cmap->n;
126969be949aSStefano Zampini   PetscInt            *lnk,i,k,nsend,rstart;
1270912837bbSHong Zhang   PetscBT             lnkbt;
1271ec4bef21SJose E. Roman   PetscMPIInt         tagi,tagj,*len_si,*len_s,*len_ri,nrecv;
1272ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted=0;
12738c78258cSHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k,row,ncols,*cols;
12747f3e1f30SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners,nzi;
1275912837bbSHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1276912837bbSHong Zhang   MPI_Request         *swaits,*rwaits;
1277912837bbSHong Zhang   MPI_Status          *sstatus,rstatus;
1278912837bbSHong Zhang   PetscLayout         rowmap;
1279912837bbSHong Zhang   PetscInt            *owners_co,*coi,*coj;    /* i and j array of (p->B)^T*A*P - used in the communication */
1280912837bbSHong Zhang   PetscMPIInt         *len_r,*id_r;    /* array of length of comm->size, store send/recv matrix values */
12817f3e1f30SHong Zhang   PetscInt            *Jptr,*prmap=p->garray,con,j,Crmax;
12824ede91e3SHong Zhang   Mat_SeqAIJ          *a_loc,*c_loc,*c_oth;
1283912837bbSHong Zhang   PetscTable          ta;
1284b92f168fSBarry Smith   MatType             mtype;
1285e83e5f86SFande Kong   const char          *prefix;
1286912837bbSHong Zhang 
1287912837bbSHong Zhang   PetscFunctionBegin;
12889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
12899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
12909566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1291912837bbSHong Zhang 
12924222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12939566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
12949566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
1295912837bbSHong Zhang 
12964222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1297912837bbSHong Zhang 
12983cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
12999566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1300912837bbSHong Zhang   ptap->reuse = MAT_INITIAL_MATRIX;
1301912837bbSHong Zhang 
1302912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1303912837bbSHong Zhang   /* --------------------------------- */
1304*acd337a6SBarry Smith   PetscCall(MatTranspose(p->A,MAT_INITIAL_MATRIX,&ptap->Rd));
1305*acd337a6SBarry Smith   PetscCall(MatTranspose(p->B,MAT_INITIAL_MATRIX,&ptap->Ro));
1306912837bbSHong Zhang 
1307669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
1308669e9c86SHong Zhang   /* ---------------------------*/
13099566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&ptap->A_loc));
1310912837bbSHong Zhang 
13114ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
1312912837bbSHong Zhang   /* ------------------------------------ */
13139566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
13149566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro,prefix));
13159566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro,"inner_offdiag_"));
13169566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&ptap->C_oth));
13179566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro,ptap->A_loc,fill,ptap->C_oth));
1318912837bbSHong Zhang 
1319912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1320912837bbSHong Zhang   /* ------------------------------------------ */
1321912837bbSHong Zhang   /* determine row ownership */
13229566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm,&rowmap));
1323912837bbSHong Zhang   rowmap->n  = pn;
1324912837bbSHong Zhang   rowmap->bs = 1;
13259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1326912837bbSHong Zhang   owners = rowmap->range;
1327912837bbSHong Zhang 
1328912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
13299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(size,&len_s,size,&len_si,size,&sstatus,size+2,&owners_co));
13309566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s,size));
13319566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si,size));
1332912837bbSHong Zhang 
1333912837bbSHong Zhang   c_oth = (Mat_SeqAIJ*)ptap->C_oth->data;
1334912837bbSHong Zhang   coi   = c_oth->i; coj = c_oth->j;
1335912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1336912837bbSHong Zhang   proc  = 0;
1337912837bbSHong Zhang   for (i=0; i<con; i++) {
1338912837bbSHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
13397f3e1f30SHong Zhang     len_si[proc]++;               /* num of rows in Co(=Pt*A) to be sent to [proc] */
1340912837bbSHong Zhang     len_s[proc] += coi[i+1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1341912837bbSHong Zhang   }
1342912837bbSHong Zhang 
1343912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1344912837bbSHong Zhang   owners_co[0] = 0;
1345912837bbSHong Zhang   nsend        = 0;
1346912837bbSHong Zhang   for (proc=0; proc<size; proc++) {
1347912837bbSHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1348912837bbSHong Zhang     if (len_s[proc]) {
1349912837bbSHong Zhang       nsend++;
1350912837bbSHong Zhang       len_si[proc] = 2*(len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1351912837bbSHong Zhang       len         += len_si[proc];
1352912837bbSHong Zhang     }
1353912837bbSHong Zhang   }
1354912837bbSHong Zhang 
1355912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13569566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm,NULL,len_s,&nrecv));
13579566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm,nsend,nrecv,len_s,len_si,&id_r,&len_r,&len_ri));
1358912837bbSHong Zhang 
1359912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13609566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagj));
13619566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagj,nrecv,id_r,len_r,&buf_rj,&rwaits));
13629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend+1,&swaits));
1363912837bbSHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1364912837bbSHong Zhang     if (!len_s[proc]) continue;
1365912837bbSHong Zhang     i    = owners_co[proc];
13669566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k));
1367912837bbSHong Zhang     k++;
1368912837bbSHong Zhang   }
1369912837bbSHong Zhang 
13707f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
1371912837bbSHong Zhang   /* ---------------------------------------- */
13729566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd,prefix));
13739566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd,"inner_diag_"));
13749566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&ptap->C_loc));
13759566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd,ptap->A_loc,fill,ptap->C_loc));
1376912837bbSHong Zhang   c_loc = (Mat_SeqAIJ*)ptap->C_loc->data;
1377912837bbSHong Zhang 
1378912837bbSHong Zhang   /* receives coj are complete */
1379912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
13809566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus));
1381912837bbSHong Zhang   }
13829566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13839566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend,swaits,sstatus));
1384912837bbSHong Zhang 
1385912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
13864ede91e3SHong Zhang   a_loc = (Mat_SeqAIJ*)(ptap->A_loc)->data;
1387669e9c86SHong Zhang 
1388669e9c86SHong Zhang   /* create and initialize a linked list */
13899566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(an,aN,&ta)); /* for compute Crmax */
13904ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,ptap->A_loc->rmap->N,ta);
1391669e9c86SHong Zhang 
1392912837bbSHong Zhang   for (k=0; k<nrecv; k++) {/* k-th received message */
1393912837bbSHong Zhang     Jptr = buf_rj[k];
1394912837bbSHong Zhang     for (j=0; j<len_r[k]; j++) {
13959566063dSJacob Faibussowitsch       PetscCall(PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES));
1396912837bbSHong Zhang     }
1397912837bbSHong Zhang   }
13989566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Crmax));
13999566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
1400912837bbSHong Zhang 
1401912837bbSHong Zhang   /* (4) send and recv coi */
1402912837bbSHong Zhang   /*-----------------------*/
14039566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagi));
14049566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagi,nrecv,id_r,len_ri,&buf_ri,&rwaits));
14059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len+1,&buf_s));
1406912837bbSHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1407912837bbSHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1408912837bbSHong Zhang     if (!len_s[proc]) continue;
1409912837bbSHong Zhang     /* form outgoing message for i-structure:
1410912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1411912837bbSHong Zhang                [1:nrows]:           row index (global)
1412912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1413912837bbSHong Zhang     */
1414912837bbSHong Zhang     /*-------------------------------------------*/
1415912837bbSHong Zhang     nrows       = len_si[proc]/2 - 1; /* num of rows in Co to be sent to [proc] */
1416912837bbSHong Zhang     buf_si_i    = buf_si + nrows+1;
1417912837bbSHong Zhang     buf_si[0]   = nrows;
1418912837bbSHong Zhang     buf_si_i[0] = 0;
1419912837bbSHong Zhang     nrows       = 0;
1420912837bbSHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1421912837bbSHong Zhang       nzi = coi[i+1] - coi[i];
1422912837bbSHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1423912837bbSHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1424912837bbSHong Zhang       nrows++;
1425912837bbSHong Zhang     }
14269566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k));
1427912837bbSHong Zhang     k++;
1428912837bbSHong Zhang     buf_si += len_si[proc];
1429912837bbSHong Zhang   }
1430912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
14319566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus));
1432912837bbSHong Zhang   }
14339566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
14349566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend,swaits,sstatus));
1435912837bbSHong Zhang 
14369566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s,len_si,sstatus,owners_co));
14379566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
14389566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
14399566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1440912837bbSHong Zhang 
14414222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1442912837bbSHong Zhang   /* ------------------------------------------ */
14434222ddf1SHong Zhang   /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */
14449566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax,&free_space));
1445912837bbSHong Zhang   current_space = free_space;
1446912837bbSHong Zhang 
14479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv,&buf_ri_k,nrecv,&nextrow,nrecv,&nextci));
1448912837bbSHong Zhang   for (k=0; k<nrecv; k++) {
1449912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1450912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1451912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
1452a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1453912837bbSHong Zhang   }
1454912837bbSHong Zhang 
1455d0609cedSBarry Smith   MatPreallocateBegin(comm,pn,an,dnz,onz);
14569566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax,aN,&lnk,&lnkbt));
14578c78258cSHong Zhang   for (i=0; i<pn; i++) { /* for each local row of C */
14584222ddf1SHong Zhang     /* add C_loc into C */
1459912837bbSHong Zhang     nzi  = c_loc->i[i+1] - c_loc->i[i];
1460912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14619566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt));
1462912837bbSHong Zhang 
1463912837bbSHong Zhang     /* add received col data into lnk */
1464912837bbSHong Zhang     for (k=0; k<nrecv; k++) { /* k-th received message */
1465912837bbSHong Zhang       if (i == *nextrow[k]) { /* i-th row */
1466912837bbSHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
1467912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14689566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt));
1469912837bbSHong Zhang         nextrow[k]++; nextci[k]++;
1470912837bbSHong Zhang       }
1471912837bbSHong Zhang     }
14728c78258cSHong Zhang 
14738c78258cSHong Zhang     /* add missing diagonal entry */
14748c78258cSHong Zhang     if (C->force_diagonals) {
14758c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14769566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1,&k,lnk,lnkbt));
14778c78258cSHong Zhang     }
14788c78258cSHong Zhang 
1479912837bbSHong Zhang     nzi = lnk[0];
1480912837bbSHong Zhang 
1481912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14829566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN,nzi,current_space->array,lnk,lnkbt));
14839566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+owners[rank],nzi,current_space->array,dnz,onz));
1484912837bbSHong Zhang   }
14859566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
14869566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
14879566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1488912837bbSHong Zhang 
1489912837bbSHong Zhang   /* local sizes and preallocation */
14909566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,pn,an,PETSC_DETERMINE,PETSC_DETERMINE));
14919566063dSJacob Faibussowitsch   if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap,P->cmap->bs));
14929566063dSJacob Faibussowitsch   if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap,A->cmap->bs));
14939566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
1494d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
1495912837bbSHong Zhang 
149669be949aSStefano Zampini   /* add C_loc and C_oth to C */
14979566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C,&rstart,NULL));
149869be949aSStefano Zampini   for (i=0; i<pn; i++) {
14998c78258cSHong Zhang     ncols = c_loc->i[i+1] - c_loc->i[i];
15008c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
15018c78258cSHong Zhang     row   = rstart + i;
15029566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES));
15038c78258cSHong Zhang 
15048c78258cSHong Zhang     if (C->force_diagonals) {
15059566063dSJacob Faibussowitsch       PetscCall(MatSetValues(C,1,(const PetscInt*)&row,1,(const PetscInt*)&row,NULL,INSERT_VALUES));
15068c78258cSHong Zhang     }
150769be949aSStefano Zampini   }
150869be949aSStefano Zampini   for (i=0; i<con; i++) {
15098c78258cSHong Zhang     ncols = c_oth->i[i+1] - c_oth->i[i];
15108c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
15118c78258cSHong Zhang     row   = prmap[i];
15129566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES));
151369be949aSStefano Zampini   }
15149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
15159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
15169566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
151769be949aSStefano Zampini 
1518912837bbSHong Zhang   /* members in merge */
15199566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
15209566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
15219566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
15229566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
15239566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
15249566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
15259566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1526912837bbSHong Zhang 
15274222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
15286718818eSStefano Zampini   C->product->data    = ptap;
15296718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
1530912837bbSHong Zhang   PetscFunctionReturn(0);
1531912837bbSHong Zhang }
1532912837bbSHong Zhang 
1533912837bbSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,Mat C)
1534912837bbSHong Zhang {
15356718818eSStefano Zampini   Mat_MPIAIJ        *p=(Mat_MPIAIJ*)P->data;
1536669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
15376718818eSStefano Zampini   Mat_APMPI         *ptap;
1538669e9c86SHong Zhang   Mat               A_loc,C_loc,C_oth;
1539912837bbSHong Zhang   PetscInt          i,rstart,rend,cm,ncols,row;
1540912837bbSHong Zhang   const PetscInt    *cols;
1541912837bbSHong Zhang   const PetscScalar *vals;
1542912837bbSHong Zhang 
1543912837bbSHong Zhang   PetscFunctionBegin;
15446718818eSStefano Zampini   MatCheckProduct(C,3);
15456718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
154628b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
154728b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
15489566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1549912837bbSHong Zhang 
1550912837bbSHong Zhang   if (ptap->reuse == MAT_REUSE_MATRIX) {
1551669e9c86SHong Zhang     /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1552669e9c86SHong Zhang     /* 1) get R = Pd^T, Ro = Po^T */
1553669e9c86SHong Zhang     /*----------------------------*/
1554*acd337a6SBarry Smith     PetscCall(MatTranspose(p->A,MAT_REUSE_MATRIX,&ptap->Rd));
1555*acd337a6SBarry Smith     PetscCall(MatTranspose(p->B,MAT_REUSE_MATRIX,&ptap->Ro));
1556669e9c86SHong Zhang 
1557669e9c86SHong Zhang     /* 2) compute numeric A_loc */
1558669e9c86SHong Zhang     /*--------------------------*/
15599566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&ptap->A_loc));
1560912837bbSHong Zhang   }
1561912837bbSHong Zhang 
1562669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15634ede91e3SHong Zhang   A_loc = ptap->A_loc;
15649566063dSJacob Faibussowitsch   PetscCall(((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd,A_loc,ptap->C_loc));
15659566063dSJacob Faibussowitsch   PetscCall(((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro,A_loc,ptap->C_oth));
1566912837bbSHong Zhang   C_loc = ptap->C_loc;
1567912837bbSHong Zhang   C_oth = ptap->C_oth;
1568912837bbSHong Zhang 
156969be949aSStefano Zampini   /* add C_loc and C_oth to C */
15709566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C,&rstart,&rend));
1571912837bbSHong Zhang 
1572912837bbSHong Zhang   /* C_loc -> C */
1573912837bbSHong Zhang   cm    = C_loc->rmap->N;
1574912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_loc->data;
1575912837bbSHong Zhang   cols = c_seq->j;
1576912837bbSHong Zhang   vals = c_seq->a;
1577912837bbSHong Zhang   for (i=0; i<cm; i++) {
1578912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1579912837bbSHong Zhang     row = rstart + i;
15809566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES));
1581912837bbSHong Zhang     cols += ncols; vals += ncols;
1582912837bbSHong Zhang   }
1583912837bbSHong Zhang 
1584912837bbSHong Zhang   /* Co -> C, off-processor part */
1585912837bbSHong Zhang   cm    = C_oth->rmap->N;
1586912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_oth->data;
1587912837bbSHong Zhang   cols  = c_seq->j;
1588912837bbSHong Zhang   vals  = c_seq->a;
1589912837bbSHong Zhang   for (i=0; i<cm; i++) {
1590912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1591912837bbSHong Zhang     row = p->garray[i];
15929566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES));
1593912837bbSHong Zhang     cols += ncols; vals += ncols;
1594912837bbSHong Zhang   }
15959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
15969566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
15979566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
1598912837bbSHong Zhang 
1599912837bbSHong Zhang   ptap->reuse = MAT_REUSE_MATRIX;
1600912837bbSHong Zhang   PetscFunctionReturn(0);
1601912837bbSHong Zhang }
1602912837bbSHong Zhang 
16036da69ca6SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P,Mat A,Mat C)
1604d6ab1dc0SHong Zhang {
1605d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
16066718818eSStefano Zampini   Mat_MPIAIJ          *p =(Mat_MPIAIJ*)P->data;
1607d6ab1dc0SHong Zhang   Mat_SeqAIJ          *pd=(Mat_SeqAIJ*)(p->A)->data,*po=(Mat_SeqAIJ*)(p->B)->data;
16083cdca5ebSHong Zhang   Mat_APMPI           *ptap;
1609e745005bSHong Zhang   PetscInt            *adj;
1610e745005bSHong Zhang   PetscInt            i,j,k,anz,pnz,row,*cj,nexta;
1611e745005bSHong Zhang   MatScalar           *ada,*ca,valtmp;
1612d6ab1dc0SHong Zhang   PetscInt            am=A->rmap->n,cm=C->rmap->n,pon=(p->B)->cmap->n;
1613ce94432eSBarry Smith   MPI_Comm            comm;
1614d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,taga,*len_s;
1615d6ab1dc0SHong Zhang   PetscInt            *owners,proc,nrows,**buf_ri_k,**nextrow,**nextci;
1616d6ab1dc0SHong Zhang   PetscInt            **buf_ri,**buf_rj;
1617d6ab1dc0SHong Zhang   PetscInt            cnz=0,*bj_i,*bi,*bj,bnz,nextcj;  /* bi,bj,ba: local array of C(mpi mat) */
1618d6ab1dc0SHong Zhang   MPI_Request         *s_waits,*r_waits;
1619d6ab1dc0SHong Zhang   MPI_Status          *status;
1620d6ab1dc0SHong Zhang   MatScalar           **abuf_r,*ba_i,*pA,*coa,*ba;
1621ce496241SStefano Zampini   const PetscScalar   *dummy;
16224e201bd7SHong Zhang   PetscInt            *ai,*aj,*coi,*coj,*poJ,*pdJ;
1623d6ab1dc0SHong Zhang   Mat                 A_loc;
1624d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1625d6ab1dc0SHong Zhang 
1626d6ab1dc0SHong Zhang   PetscFunctionBegin;
16276718818eSStefano Zampini   MatCheckProduct(C,3);
16286718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
162928b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
163028b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
16319566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
16329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
16339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1634d6ab1dc0SHong Zhang 
1635d6ab1dc0SHong Zhang   merge = ptap->merge;
1636d6ab1dc0SHong Zhang 
1637e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1638e745005bSHong Zhang   /*------------------------------------------*/
1639d6ab1dc0SHong Zhang   /* get data from symbolic products */
1640d6ab1dc0SHong Zhang   coi    = merge->coi; coj = merge->coj;
16419566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(coi[pon]+1,&coa));
1642d6ab1dc0SHong Zhang   bi     = merge->bi; bj = merge->bj;
1643d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
16449566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bi[cm]+1,&ba));
1645d6ab1dc0SHong Zhang 
1646d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
1647d6ab1dc0SHong Zhang   A_loc = ptap->A_loc;
16489566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&A_loc));
1649d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ*)(A_loc)->data;
1650d6ab1dc0SHong Zhang   ai    = a_loc->i;
1651d6ab1dc0SHong Zhang   aj    = a_loc->j;
1652d6ab1dc0SHong Zhang 
1653ce496241SStefano Zampini   /* trigger copy to CPU */
16549566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A,&dummy));
16559566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A,&dummy));
16569566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B,&dummy));
16579566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B,&dummy));
1658d6ab1dc0SHong Zhang   for (i=0; i<am; i++) {
1659d6ab1dc0SHong Zhang     anz = ai[i+1] - ai[i];
1660d6ab1dc0SHong Zhang     adj = aj + ai[i];
1661d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1662d6ab1dc0SHong Zhang 
1663d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1664e745005bSHong Zhang     /*-------------------------------------------------------------*/
1665d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1666d6ab1dc0SHong Zhang     pnz = po->i[i+1] - po->i[i];
1667d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1668d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1669d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1670d6ab1dc0SHong Zhang       row = poJ[j];
1671d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1672d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1673e745005bSHong Zhang       /* perform sparse axpy */
1674e745005bSHong Zhang       nexta  = 0;
1675d6ab1dc0SHong Zhang       valtmp = pA[j];
1676e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1677e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1678e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1679e745005bSHong Zhang           nexta++;
1680d6ab1dc0SHong Zhang         }
1681e745005bSHong Zhang       }
16829566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*anz));
1683d6ab1dc0SHong Zhang     }
1684d6ab1dc0SHong Zhang 
1685d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1686d6ab1dc0SHong Zhang     pnz = pd->i[i+1] - pd->i[i];
1687d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1688d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1689d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1690d6ab1dc0SHong Zhang       row = pdJ[j];
1691d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1692d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1693e745005bSHong Zhang       /* perform sparse axpy */
1694e745005bSHong Zhang       nexta  = 0;
1695d6ab1dc0SHong Zhang       valtmp = pA[j];
1696e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1697e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1698e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1699e745005bSHong Zhang           nexta++;
1700d6ab1dc0SHong Zhang         }
1701e745005bSHong Zhang       }
17029566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*anz));
1703d6ab1dc0SHong Zhang     }
1704d6ab1dc0SHong Zhang   }
1705d6ab1dc0SHong Zhang 
1706d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1707d6ab1dc0SHong Zhang   /*------------------------------------*/
1708d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1709d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1710d6ab1dc0SHong Zhang   len_s  = merge->len_s;
17119566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&taga));
17129566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm,taga,merge->nrecv,merge->id_r,merge->len_r,&abuf_r,&r_waits));
1713d6ab1dc0SHong Zhang 
17149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend+1,&s_waits,size,&status));
1715d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1716d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1717d6ab1dc0SHong Zhang     i    = merge->owners_co[proc];
17189566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coa+coi[i],len_s[proc],MPIU_MATSCALAR,proc,taga,comm,s_waits+k));
1719d6ab1dc0SHong Zhang     k++;
1720d6ab1dc0SHong Zhang   }
17219566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv,r_waits,status));
17229566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,s_waits,status));
1723d6ab1dc0SHong Zhang 
17249566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits,status));
17259566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
17269566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1727d6ab1dc0SHong Zhang 
1728d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
1729d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
17309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci));
1731d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
1732e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1733d6ab1dc0SHong Zhang     nrows       = *(buf_ri_k[k]);
1734d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k]+1;  /* next row number of k-th recved i-structure */
1735a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1736d6ab1dc0SHong Zhang   }
1737d6ab1dc0SHong Zhang 
1738d6ab1dc0SHong Zhang   for (i=0; i<cm; i++) {
1739d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1740d6ab1dc0SHong Zhang     bj_i = bj + bi[i];  /* col indices of the i-th row of C */
1741d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1742d6ab1dc0SHong Zhang     bnz  = bi[i+1] - bi[i];
1743d6ab1dc0SHong Zhang     /* add received vals into ba */
1744d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
1745d6ab1dc0SHong Zhang       /* i-th row */
1746d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1747d6ab1dc0SHong Zhang         cnz    = *(nextci[k]+1) - *nextci[k];
1748d6ab1dc0SHong Zhang         cj     = buf_rj[k] + *(nextci[k]);
1749d6ab1dc0SHong Zhang         ca     = abuf_r[k] + *(nextci[k]);
1750d6ab1dc0SHong Zhang         nextcj = 0;
1751d6ab1dc0SHong Zhang         for (j=0; nextcj<cnz; j++) {
1752d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1753d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1754d6ab1dc0SHong Zhang           }
1755d6ab1dc0SHong Zhang         }
1756d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
17579566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0*cnz));
1758d6ab1dc0SHong Zhang       }
1759d6ab1dc0SHong Zhang     }
17609566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,bnz,bj_i,ba_i,INSERT_VALUES));
1761d6ab1dc0SHong Zhang   }
17629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
17639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
1764d6ab1dc0SHong Zhang 
17659566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17669566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17679566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17689566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
1769d6ab1dc0SHong Zhang   PetscFunctionReturn(0);
1770d6ab1dc0SHong Zhang }
1771d6ab1dc0SHong Zhang 
17724222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P,Mat A,PetscReal fill,Mat C)
1773d6ab1dc0SHong Zhang {
1774b419842dSStefano Zampini   Mat                 A_loc;
17753cdca5ebSHong Zhang   Mat_APMPI           *ptap;
17760298fd71SBarry Smith   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
17776718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data,*a=(Mat_MPIAIJ*)A->data;
1778d6ab1dc0SHong Zhang   PetscInt            *pdti,*pdtj,*poti,*potj,*ptJ;
1779d6ab1dc0SHong Zhang   PetscInt            nnz;
1780d6ab1dc0SHong Zhang   PetscInt            *lnk,*owners_co,*coi,*coj,i,k,pnz,row;
1781d6ab1dc0SHong Zhang   PetscInt            am  =A->rmap->n,pn=P->cmap->n;
1782ce94432eSBarry Smith   MPI_Comm            comm;
1783d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,tagi,tagj,*len_si,*len_s,*len_ri;
1784d6ab1dc0SHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k;
1785d6ab1dc0SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners;
1786d6ab1dc0SHong Zhang   PetscInt            nzi,*bi,*bj;
1787d6ab1dc0SHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1788d6ab1dc0SHong Zhang   MPI_Request         *swaits,*rwaits;
1789d6ab1dc0SHong Zhang   MPI_Status          *sstatus,rstatus;
1790d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1791d6ab1dc0SHong Zhang   PetscInt            *ai,*aj,*Jptr,anz,*prmap=p->garray,pon,nspacedouble=0,j;
1792d6ab1dc0SHong Zhang   PetscReal           afill  =1.0,afill_tmp;
17934b38b95cSHong Zhang   PetscInt            rstart = P->cmap->rstart,rmax,aN=A->cmap->N,Armax;
1794b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
17950acc65b4SHong Zhang   PetscTable          ta;
1796b92f168fSBarry Smith   MatType             mtype;
1797d6ab1dc0SHong Zhang 
1798d6ab1dc0SHong Zhang   PetscFunctionBegin;
17999566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
1800d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
1801aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend,comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
1802d6ab1dc0SHong Zhang 
18039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
18049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1805d6ab1dc0SHong Zhang 
18063cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
18079566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1808d6ab1dc0SHong Zhang 
1809d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
18109566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&A_loc));
18112205254eSKarl Rupp 
1812d6ab1dc0SHong Zhang   ptap->A_loc = A_loc;
1813d6ab1dc0SHong Zhang   a_loc       = (Mat_SeqAIJ*)(A_loc)->data;
1814d6ab1dc0SHong Zhang   ai          = a_loc->i;
1815d6ab1dc0SHong Zhang   aj          = a_loc->j;
1816d6ab1dc0SHong Zhang 
1817d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
1818d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
18199566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj));
18209566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B,&poti,&potj));
1821d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1822d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
18239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon+1,&coi));
1824d6ab1dc0SHong Zhang   coi[0] = 0;
1825d6ab1dc0SHong Zhang 
1826d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1827f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(poti[pon],ai[am]));
18289566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz,&free_space));
1829d6ab1dc0SHong Zhang   current_space = free_space;
183019f0e57aSHong Zhang 
1831d6ab1dc0SHong Zhang   /* create and initialize a linked list */
18329566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(A->cmap->n + a->B->cmap->N,aN,&ta));
18334b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,am,ta);
18349566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Armax));
183533ba5e2fSHong Zhang 
18369566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax,&lnk));
1837d6ab1dc0SHong Zhang 
1838d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1839d6ab1dc0SHong Zhang     pnz = poti[i+1] - poti[i];
1840d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1841d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1842d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1843d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
1844d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1845d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18469566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk));
1847d6ab1dc0SHong Zhang     }
1848d6ab1dc0SHong Zhang     nnz = lnk[0];
1849d6ab1dc0SHong Zhang 
1850d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1851d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
18529566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space));
1853d6ab1dc0SHong Zhang       nspacedouble++;
1854d6ab1dc0SHong Zhang     }
1855d6ab1dc0SHong Zhang 
1856d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18579566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk));
18582205254eSKarl Rupp 
1859d6ab1dc0SHong Zhang     current_space->array           += nnz;
1860d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
1861d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18622205254eSKarl Rupp 
1863d6ab1dc0SHong Zhang     coi[i+1] = coi[i] + nnz;
1864d6ab1dc0SHong Zhang   }
1865d6ab1dc0SHong Zhang 
18669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(coi[pon]+1,&coj));
18679566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,coj));
18689566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18692205254eSKarl Rupp 
1870118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon]/(poti[pon] + ai[am]+1);
1871d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1872d6ab1dc0SHong Zhang 
1873d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1874d6ab1dc0SHong Zhang   /*----------------------------------------------*/
1875d6ab1dc0SHong Zhang   /* determine row ownership */
18769566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18779566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm,&merge->rowmap));
18782205254eSKarl Rupp 
1879d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1880d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18812205254eSKarl Rupp 
18829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1883d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1884d6ab1dc0SHong Zhang 
1885d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18869566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size,&len_si));
18879566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size,&merge->len_s));
18882205254eSKarl Rupp 
1889d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1890d6ab1dc0SHong Zhang   merge->nsend = 0;
1891d6ab1dc0SHong Zhang 
18929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size+2,&owners_co));
1893d6ab1dc0SHong Zhang 
1894d6ab1dc0SHong Zhang   proc = 0;
1895d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1896d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
1897d6ab1dc0SHong Zhang     len_si[proc]++;  /* num of rows in Co to be sent to [proc] */
1898d6ab1dc0SHong Zhang     len_s[proc] += coi[i+1] - coi[i];
1899d6ab1dc0SHong Zhang   }
1900d6ab1dc0SHong Zhang 
1901d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1902d6ab1dc0SHong Zhang   owners_co[0] = 0;
1903d6ab1dc0SHong Zhang   for (proc=0; proc<size; proc++) {
1904d6ab1dc0SHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1905d6ab1dc0SHong Zhang     if (len_si[proc]) {
1906d6ab1dc0SHong Zhang       merge->nsend++;
1907d6ab1dc0SHong Zhang       len_si[proc] = 2*(len_si[proc] + 1);
1908d6ab1dc0SHong Zhang       len         += len_si[proc];
1909d6ab1dc0SHong Zhang     }
1910d6ab1dc0SHong Zhang   }
1911d6ab1dc0SHong Zhang 
1912d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
19139566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm,NULL,len_s,&merge->nrecv));
19149566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm,merge->nsend,merge->nrecv,len_s,len_si,&merge->id_r,&merge->len_r,&len_ri));
1915d6ab1dc0SHong Zhang 
1916d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
19179566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagj));
19189566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagj,merge->nrecv,merge->id_r,merge->len_r,&buf_rj,&rwaits));
19199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend+1,&swaits));
1920d6ab1dc0SHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1921d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1922d6ab1dc0SHong Zhang     i    = owners_co[proc];
19239566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k));
1924d6ab1dc0SHong Zhang     k++;
1925d6ab1dc0SHong Zhang   }
1926d6ab1dc0SHong Zhang 
1927d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
19289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size,&sstatus));
1929d6ab1dc0SHong Zhang   for (i=0; i<merge->nrecv; i++) {
1930ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19319566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus));
1932d6ab1dc0SHong Zhang   }
19339566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19349566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,swaits,sstatus));
1935d6ab1dc0SHong Zhang 
19360acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1937c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19380acc65b4SHong Zhang   for (k=0; k<merge->nrecv; k++) {/* k-th received message */
19390acc65b4SHong Zhang     Jptr = buf_rj[k];
19400acc65b4SHong Zhang     for (j=0; j<merge->len_r[k]; j++) {
19419566063dSJacob Faibussowitsch       PetscCall(PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES));
19420acc65b4SHong Zhang     }
19430acc65b4SHong Zhang   }
19449566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Armax));
19450acc65b4SHong Zhang 
1946d6ab1dc0SHong Zhang   /* send and recv coi */
1947d6ab1dc0SHong Zhang   /*-------------------*/
19489566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagi));
19499566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagi,merge->nrecv,merge->id_r,len_ri,&buf_ri,&rwaits));
19509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len+1,&buf_s));
1951d6ab1dc0SHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1952d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1953d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1954d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1955d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1956d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1957d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1958d6ab1dc0SHong Zhang     */
1959d6ab1dc0SHong Zhang     /*-------------------------------------------*/
1960d6ab1dc0SHong Zhang     nrows       = len_si[proc]/2 - 1;
1961d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows+1;
1962d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1963d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1964d6ab1dc0SHong Zhang     nrows       = 0;
1965d6ab1dc0SHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1966d6ab1dc0SHong Zhang       nzi               = coi[i+1] - coi[i];
1967d6ab1dc0SHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1968d6ab1dc0SHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1969d6ab1dc0SHong Zhang       nrows++;
1970d6ab1dc0SHong Zhang     }
19719566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k));
1972d6ab1dc0SHong Zhang     k++;
1973d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1974d6ab1dc0SHong Zhang   }
1975d6ab1dc0SHong Zhang   i = merge->nrecv;
1976d6ab1dc0SHong Zhang   while (i--) {
1977ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19789566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus));
1979d6ab1dc0SHong Zhang   }
19809566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19819566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,swaits,sstatus));
19829566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19839566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19849566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19859566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19869566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1987d6ab1dc0SHong Zhang 
1988d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1989d6ab1dc0SHong Zhang   /*------------------------------------------*/
1990d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn+1,&bi));
1992d6ab1dc0SHong Zhang   bi[0] = 0;
1993d6ab1dc0SHong Zhang 
1994d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1995f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(pdti[pn],PetscIntSumTruncate(poti[pon],ai[am])));
19969566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz,&free_space));
1997d6ab1dc0SHong Zhang   current_space = free_space;
1998d6ab1dc0SHong Zhang 
19999566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci));
2000d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
2001d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
2002d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
2003d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
20042d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
2005d6ab1dc0SHong Zhang   }
2006d6ab1dc0SHong Zhang 
20079566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax,&lnk));
2008d0609cedSBarry Smith   MatPreallocateBegin(comm,pn,A->cmap->n,dnz,onz);
2009d6ab1dc0SHong Zhang   rmax = 0;
2010d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2011d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
2012d6ab1dc0SHong Zhang     pnz = pdti[i+1] - pdti[i];
2013d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
2014d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
2015d6ab1dc0SHong Zhang       row  = ptJ[j];  /* row of AP == col of Pt */
2016d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
2017d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
2018d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
20199566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk));
2020d6ab1dc0SHong Zhang     }
2021d6ab1dc0SHong Zhang 
2022d6ab1dc0SHong Zhang     /* add received col data into lnk */
2023d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
2024d6ab1dc0SHong Zhang       if (i == *nextrow[k]) { /* i-th row */
2025d6ab1dc0SHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
2026d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
20279566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi,Jptr,lnk));
2028d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
2029d6ab1dc0SHong Zhang       }
2030d6ab1dc0SHong Zhang     }
20318c78258cSHong Zhang 
20328c78258cSHong Zhang     /* add missing diagonal entry */
20338c78258cSHong Zhang     if (C->force_diagonals) {
20348c78258cSHong Zhang       k = i + owners[rank]; /* column index */
20359566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1,&k,lnk));
20368c78258cSHong Zhang     }
20378c78258cSHong Zhang 
2038d6ab1dc0SHong Zhang     nnz = lnk[0];
2039d6ab1dc0SHong Zhang 
2040d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
2041d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
20429566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space));
2043d6ab1dc0SHong Zhang       nspacedouble++;
2044d6ab1dc0SHong Zhang     }
2045d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
20469566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk));
20479566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+owners[rank],nnz,current_space->array,dnz,onz));
20482205254eSKarl Rupp 
2049d6ab1dc0SHong Zhang     current_space->array           += nnz;
2050d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
2051d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20522205254eSKarl Rupp 
2053d6ab1dc0SHong Zhang     bi[i+1] = bi[i] + nnz;
2054d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2055d6ab1dc0SHong Zhang   }
20569566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
2057d6ab1dc0SHong Zhang 
20589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[pn]+1,&bj));
20599566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,bj));
2060118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn]/(pdti[pn] + poti[pon] + ai[am]+1);
2061d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20629566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
20639566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
20649566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj));
20659566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B,&poti,&potj));
2066d6ab1dc0SHong Zhang 
20674222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20684222ddf1SHong Zhang   /*-------------------------------------------------------------------------------*/
20699566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,pn,A->cmap->n,PETSC_DETERMINE,PETSC_DETERMINE));
20709566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(C,PetscAbs(P->cmap->bs),PetscAbs(A->cmap->bs)));
20719566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
20729566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
20739566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
2074d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
20759566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C,1));
20769566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
2077d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2078d6ab1dc0SHong Zhang     row  = i + rstart;
2079d6ab1dc0SHong Zhang     nnz  = bi[i+1] - bi[i];
2080d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20819566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,nnz,Jptr,NULL,INSERT_VALUES));
2082d6ab1dc0SHong Zhang   }
20839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
20849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
20859566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
2086d6ab1dc0SHong Zhang   merge->bi        = bi;
2087d6ab1dc0SHong Zhang   merge->bj        = bj;
2088d6ab1dc0SHong Zhang   merge->coi       = coi;
2089d6ab1dc0SHong Zhang   merge->coj       = coj;
2090d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2091d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2092d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2093d6ab1dc0SHong Zhang 
20944222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20956718818eSStefano Zampini   C->product->data    = ptap;
20966718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
2097d6ab1dc0SHong Zhang   ptap->merge         = merge;
2098a560ef98SHong Zhang 
20994222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2100f96d37fcSHong Zhang 
2101f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2102f96d37fcSHong Zhang   if (bi[pn] != 0) {
21039566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
21049566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n",(double)afill));
2105f96d37fcSHong Zhang   } else {
21069566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
2107f96d37fcSHong Zhang   }
2108f96d37fcSHong Zhang #endif
2109f96d37fcSHong Zhang   PetscFunctionReturn(0);
2110f96d37fcSHong Zhang }
21114222ddf1SHong Zhang 
21124222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21134222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
21144222ddf1SHong Zhang {
21154222ddf1SHong Zhang   Mat_Product    *product = C->product;
21164222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21174222ddf1SHong Zhang   PetscReal      fill=product->fill;
21184222ddf1SHong Zhang   PetscBool      flg;
21194222ddf1SHong Zhang 
21204222ddf1SHong Zhang   PetscFunctionBegin;
21214222ddf1SHong Zhang   /* scalable */
21229566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"scalable",&flg));
21234222ddf1SHong Zhang   if (flg) {
21249566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C));
21254222ddf1SHong Zhang     goto next;
21264222ddf1SHong Zhang   }
21274222ddf1SHong Zhang 
21284222ddf1SHong Zhang   /* nonscalable */
21299566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"nonscalable",&flg));
21304222ddf1SHong Zhang   if (flg) {
21319566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C));
21324222ddf1SHong Zhang     goto next;
21334222ddf1SHong Zhang   }
21344222ddf1SHong Zhang 
21354222ddf1SHong Zhang   /* matmatmult */
21369566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"at*b",&flg));
21374222ddf1SHong Zhang   if (flg) {
21384222ddf1SHong Zhang     Mat       At;
21394222ddf1SHong Zhang     Mat_APMPI *ptap;
21404222ddf1SHong Zhang 
21419566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A,MAT_INITIAL_MATRIX,&At));
21429566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At,B,fill,C));
21436718818eSStefano Zampini     ptap = (Mat_APMPI*)C->product->data;
21444222ddf1SHong Zhang     if (ptap) {
21454222ddf1SHong Zhang       ptap->Pt = At;
21466718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
21474222ddf1SHong Zhang     }
21484222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21494222ddf1SHong Zhang     goto next;
21504222ddf1SHong Zhang   }
21514222ddf1SHong Zhang 
21524e84afc0SStefano Zampini   /* backend general code */
21539566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"backend",&flg));
21544e84afc0SStefano Zampini   if (flg) {
21559566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21564e84afc0SStefano Zampini     PetscFunctionReturn(0);
21574e84afc0SStefano Zampini   }
21584e84afc0SStefano Zampini 
21594222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatProduct type is not supported");
21604222ddf1SHong Zhang 
21614222ddf1SHong Zhang next:
21624222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21634222ddf1SHong Zhang   PetscFunctionReturn(0);
21644222ddf1SHong Zhang }
21654222ddf1SHong Zhang 
21664222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21674222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
21684222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
21694222ddf1SHong Zhang {
21704222ddf1SHong Zhang   Mat_Product    *product = C->product;
21714222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21724222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21734e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","seqmpi","backend","hypre"};
21744e84afc0SStefano Zampini   PetscInt       nalg = 5;
21754222ddf1SHong Zhang #else
21764e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","seqmpi","backend",};
21774e84afc0SStefano Zampini   PetscInt       nalg = 4;
21784222ddf1SHong Zhang #endif
21794222ddf1SHong Zhang   PetscInt       alg = 1; /* set nonscalable algorithm as default */
21804222ddf1SHong Zhang   PetscBool      flg;
21814222ddf1SHong Zhang   MPI_Comm       comm;
21824222ddf1SHong Zhang 
21834222ddf1SHong Zhang   PetscFunctionBegin;
21849566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
21854222ddf1SHong Zhang 
21864222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21879566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
21884222ddf1SHong Zhang   if (flg) {
21899566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21904222ddf1SHong Zhang 
21914222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21924222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21934222ddf1SHong Zhang       MatInfo     Ainfo,Binfo;
21944222ddf1SHong Zhang       PetscInt    nz_local;
21954222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
21964222ddf1SHong Zhang 
21979566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
21989566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B,MAT_LOCAL,&Binfo));
21994222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22004222ddf1SHong Zhang 
22014222ddf1SHong Zhang       if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22021c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
22034222ddf1SHong Zhang 
22044222ddf1SHong Zhang       if (alg_scalable) {
22054222ddf1SHong Zhang         alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22069566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22079566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B,"Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n",B->cmap->N,(double)(product->fill*nz_local)));
22084222ddf1SHong Zhang       }
22094222ddf1SHong Zhang     }
22104222ddf1SHong Zhang   }
22114222ddf1SHong Zhang 
22124222ddf1SHong Zhang   /* Get runtime option */
22134222ddf1SHong Zhang   if (product->api_user) {
2214d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMult","Mat");
22159566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2216d0609cedSBarry Smith     PetscOptionsEnd();
22174222ddf1SHong Zhang   } else {
2218d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AB","Mat");
22199566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2220d0609cedSBarry Smith     PetscOptionsEnd();
22214222ddf1SHong Zhang   }
22224222ddf1SHong Zhang   if (flg) {
22239566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22244222ddf1SHong Zhang   }
22254222ddf1SHong Zhang 
22264222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
22274222ddf1SHong Zhang   PetscFunctionReturn(0);
22284222ddf1SHong Zhang }
22294222ddf1SHong Zhang 
22308a9c020eSBarry Smith static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
22318a9c020eSBarry Smith {
22328a9c020eSBarry Smith   PetscFunctionBegin;
22338a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
22348a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
22358a9c020eSBarry Smith   PetscFunctionReturn(0);
22368a9c020eSBarry Smith }
22378a9c020eSBarry Smith 
22384222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
22394222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
22404222ddf1SHong Zhang {
22414222ddf1SHong Zhang   Mat_Product    *product = C->product;
22424222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
22434e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","at*b","backend"};
22444e84afc0SStefano Zampini   PetscInt       nalg = 4;
22454222ddf1SHong Zhang   PetscInt       alg = 1; /* set default algorithm  */
22464222ddf1SHong Zhang   PetscBool      flg;
22474222ddf1SHong Zhang   MPI_Comm       comm;
22484222ddf1SHong Zhang 
22494222ddf1SHong Zhang   PetscFunctionBegin;
22504222ddf1SHong Zhang   /* Check matrix local sizes */
22519566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
2252aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
22534222ddf1SHong Zhang 
22544222ddf1SHong Zhang   /* Set default algorithm */
22559566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
22564222ddf1SHong Zhang   if (flg) {
22579566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22584222ddf1SHong Zhang   }
22594222ddf1SHong Zhang 
22604222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22614222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22624222ddf1SHong Zhang     MatInfo     Ainfo,Binfo;
22634222ddf1SHong Zhang     PetscInt    nz_local;
22644222ddf1SHong Zhang     PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
22654222ddf1SHong Zhang 
22669566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
22679566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B,MAT_LOCAL,&Binfo));
22684222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22694222ddf1SHong Zhang 
22704222ddf1SHong Zhang     if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22711c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
22724222ddf1SHong Zhang 
22734222ddf1SHong Zhang     if (alg_scalable) {
22744222ddf1SHong Zhang       alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22759566063dSJacob Faibussowitsch       PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22769566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B,"Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n",B->cmap->N,(double)(product->fill*nz_local)));
22774222ddf1SHong Zhang     }
22784222ddf1SHong Zhang   }
22794222ddf1SHong Zhang 
22804222ddf1SHong Zhang   /* Get runtime option */
22814222ddf1SHong Zhang   if (product->api_user) {
2282d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatTransposeMatMult","Mat");
22839566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2284d0609cedSBarry Smith     PetscOptionsEnd();
22854222ddf1SHong Zhang   } else {
2286d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AtB","Mat");
22879566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2288d0609cedSBarry Smith     PetscOptionsEnd();
22894222ddf1SHong Zhang   }
22904222ddf1SHong Zhang   if (flg) {
22919566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22924222ddf1SHong Zhang   }
22934222ddf1SHong Zhang 
22944222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22954222ddf1SHong Zhang   PetscFunctionReturn(0);
22964222ddf1SHong Zhang }
22974222ddf1SHong Zhang 
22984222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
22994222ddf1SHong Zhang {
23004222ddf1SHong Zhang   Mat_Product    *product = C->product;
23014222ddf1SHong Zhang   Mat            A=product->A,P=product->B;
23024222ddf1SHong Zhang   MPI_Comm       comm;
23034222ddf1SHong Zhang   PetscBool      flg;
23044222ddf1SHong Zhang   PetscInt       alg=1; /* set default algorithm */
23054222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
23064e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","allatonce","allatonce_merged","backend"};
23074222ddf1SHong Zhang   PetscInt       nalg=5;
23084e84afc0SStefano Zampini #else
23094e84afc0SStefano Zampini   const char     *algTypes[6] = {"scalable","nonscalable","allatonce","allatonce_merged","backend","hypre"};
23104e84afc0SStefano Zampini   PetscInt       nalg=6;
23114222ddf1SHong Zhang #endif
23124222ddf1SHong Zhang   PetscInt       pN=P->cmap->N;
23134222ddf1SHong Zhang 
23144222ddf1SHong Zhang   PetscFunctionBegin;
23154222ddf1SHong Zhang   /* Check matrix local sizes */
23169566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
2317aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
2318aed4548fSBarry Smith   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend);
23194222ddf1SHong Zhang 
23204222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
23219566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
23224222ddf1SHong Zhang   if (flg) {
23239566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23244222ddf1SHong Zhang 
23254222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
23264222ddf1SHong Zhang     if (pN > 100000) {
23274222ddf1SHong Zhang       MatInfo     Ainfo,Pinfo;
23284222ddf1SHong Zhang       PetscInt    nz_local;
23294222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
23304222ddf1SHong Zhang 
23319566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
23329566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P,MAT_LOCAL,&Pinfo));
23334222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
23344222ddf1SHong Zhang 
23354222ddf1SHong Zhang       if (pN > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
23361c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
23374222ddf1SHong Zhang 
23384222ddf1SHong Zhang       if (alg_scalable) {
23394222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
23409566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23414222ddf1SHong Zhang       }
23424222ddf1SHong Zhang     }
23434222ddf1SHong Zhang   }
23444222ddf1SHong Zhang 
23454222ddf1SHong Zhang   /* Get runtime option */
23464222ddf1SHong Zhang   if (product->api_user) {
2347d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatPtAP","Mat");
23489566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg));
2349d0609cedSBarry Smith     PetscOptionsEnd();
23504222ddf1SHong Zhang   } else {
2351d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_PtAP","Mat");
23529566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg));
2353d0609cedSBarry Smith     PetscOptionsEnd();
23544222ddf1SHong Zhang   }
23554222ddf1SHong Zhang   if (flg) {
23569566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23574222ddf1SHong Zhang   }
23584222ddf1SHong Zhang 
23594222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23604222ddf1SHong Zhang   PetscFunctionReturn(0);
23614222ddf1SHong Zhang }
23624222ddf1SHong Zhang 
23634222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
23644222ddf1SHong Zhang {
23654222ddf1SHong Zhang   Mat_Product *product = C->product;
23664222ddf1SHong Zhang   Mat         A = product->A,R=product->B;
23674222ddf1SHong Zhang 
23684222ddf1SHong Zhang   PetscFunctionBegin;
23694222ddf1SHong Zhang   /* Check matrix local sizes */
2370aed4548fSBarry Smith   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->n,A->rmap->n,R->rmap->n,R->cmap->n);
23714222ddf1SHong Zhang 
23724222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23734222ddf1SHong Zhang   PetscFunctionReturn(0);
23744222ddf1SHong Zhang }
23754222ddf1SHong Zhang 
23764222ddf1SHong Zhang /*
23774222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23784222ddf1SHong Zhang */
23794222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
23804222ddf1SHong Zhang {
23814222ddf1SHong Zhang   Mat_Product    *product = C->product;
23824222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
23834222ddf1SHong Zhang   PetscInt       alg = 1; /* default algorithm */
23844222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","nonscalable","seqmpi"};
23854222ddf1SHong Zhang   PetscInt       nalg = 3;
23864222ddf1SHong Zhang 
23874222ddf1SHong Zhang   PetscFunctionBegin;
23884222ddf1SHong Zhang   /* Set default algorithm */
23899566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
23904222ddf1SHong Zhang   if (flg) {
23919566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23924222ddf1SHong Zhang   }
23934222ddf1SHong Zhang 
23944222ddf1SHong Zhang   /* Get runtime option */
23954222ddf1SHong Zhang   if (product->api_user) {
2396d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMatMult","Mat");
23979566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via","Algorithmic approach","MatMatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2398d0609cedSBarry Smith     PetscOptionsEnd();
23994222ddf1SHong Zhang   } else {
2400d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABC","Mat");
24019566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABC",algTypes,nalg,algTypes[alg],&alg,&flg));
2402d0609cedSBarry Smith     PetscOptionsEnd();
24034222ddf1SHong Zhang   }
24044222ddf1SHong Zhang   if (flg) {
24059566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
24064222ddf1SHong Zhang   }
24074222ddf1SHong Zhang 
24084222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
24094222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
24104222ddf1SHong Zhang   PetscFunctionReturn(0);
24114222ddf1SHong Zhang }
24124222ddf1SHong Zhang 
24134222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
24144222ddf1SHong Zhang {
24154222ddf1SHong Zhang   Mat_Product    *product = C->product;
24164222ddf1SHong Zhang 
24174222ddf1SHong Zhang   PetscFunctionBegin;
24184222ddf1SHong Zhang   switch (product->type) {
24194222ddf1SHong Zhang   case MATPRODUCT_AB:
24209566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
24214222ddf1SHong Zhang     break;
24228a9c020eSBarry Smith   case MATPRODUCT_ABt:
24238a9c020eSBarry Smith     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
24248a9c020eSBarry Smith     break;
24254222ddf1SHong Zhang   case MATPRODUCT_AtB:
24269566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
24274222ddf1SHong Zhang     break;
24284222ddf1SHong Zhang   case MATPRODUCT_PtAP:
24299566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
24304222ddf1SHong Zhang     break;
24314222ddf1SHong Zhang   case MATPRODUCT_RARt:
24329566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
24334222ddf1SHong Zhang     break;
24344222ddf1SHong Zhang   case MATPRODUCT_ABC:
24359566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
24364222ddf1SHong Zhang     break;
24376718818eSStefano Zampini   default:
24386718818eSStefano Zampini     break;
24394222ddf1SHong Zhang   }
24404222ddf1SHong Zhang   PetscFunctionReturn(0);
24414222ddf1SHong Zhang }
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