xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision aed4548f7b57b3f3898d52ba71a524e0765402ff)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
11af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
131634b032SHong Zhang 
145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat,Mat,PetscReal,Mat);
165e5acdf2Sstefano_zampini #endif
175e5acdf2Sstefano_zampini 
184222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
192499ec78SHong Zhang {
204222ddf1SHong Zhang   Mat_Product         *product = C->product;
214222ddf1SHong Zhang   Mat                 A=product->A,B=product->B;
224222ddf1SHong Zhang   MatProductAlgorithm alg=product->alg;
234222ddf1SHong Zhang   PetscReal           fill=product->fill;
245e68f438SHong Zhang   PetscBool           flg;
252499ec78SHong Zhang 
262499ec78SHong Zhang   PetscFunctionBegin;
274222ddf1SHong Zhang   /* scalable */
289566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"scalable",&flg));
294222ddf1SHong Zhang   if (flg) {
309566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C));
316718818eSStefano Zampini     PetscFunctionReturn(0);
320fc8cf34SHong Zhang   }
337d0a89b7SHong Zhang 
344222ddf1SHong Zhang   /* nonscalable */
359566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"nonscalable",&flg));
364222ddf1SHong Zhang   if (flg) {
379566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C));
386718818eSStefano Zampini     PetscFunctionReturn(0);
394222ddf1SHong Zhang   }
404222ddf1SHong Zhang 
414222ddf1SHong Zhang   /* seqmpi */
429566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"seqmpi",&flg));
434222ddf1SHong Zhang   if (flg) {
449566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A,B,fill,C));
456718818eSStefano Zampini     PetscFunctionReturn(0);
464222ddf1SHong Zhang   }
474222ddf1SHong Zhang 
484e84afc0SStefano Zampini   /* backend general code */
499566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"backend",&flg));
504e84afc0SStefano Zampini   if (flg) {
519566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
524e84afc0SStefano Zampini     PetscFunctionReturn(0);
534e84afc0SStefano Zampini   }
544e84afc0SStefano Zampini 
554222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
569566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"hypre",&flg));
574222ddf1SHong Zhang   if (flg) {
589566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A,B,fill,C));
594222ddf1SHong Zhang     PetscFunctionReturn(0);
604222ddf1SHong Zhang   }
614222ddf1SHong Zhang #endif
624222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Mat Product Algorithm is not supported");
632499ec78SHong Zhang }
642499ec78SHong Zhang 
656718818eSStefano Zampini PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
66598bc09dSHong Zhang {
676718818eSStefano Zampini   Mat_APMPI      *ptap = (Mat_APMPI*)data;
68598bc09dSHong Zhang 
69598bc09dSHong Zhang   PetscFunctionBegin;
709566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s,ptap->startsj_r));
719566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
729566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
739566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
749566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
759566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
769566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
779566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
789566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
79598bc09dSHong Zhang   PetscFunctionReturn(0);
80598bc09dSHong Zhang }
81598bc09dSHong Zhang 
82f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,Mat C)
83598bc09dSHong Zhang {
844ae0847bSHong Zhang   Mat_MPIAIJ        *a  =(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
85598bc09dSHong Zhang   Mat_SeqAIJ        *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
86598bc09dSHong Zhang   Mat_SeqAIJ        *cd =(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
87c12557a1SHong Zhang   PetscScalar       *cda=cd->a,*coa=co->a;
88598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
899ce11a7cSHong Zhang   PetscScalar       *apa,*ca;
90c12557a1SHong Zhang   PetscInt          cm =C->rmap->n;
916718818eSStefano Zampini   Mat_APMPI         *ptap;
92c12557a1SHong Zhang   PetscInt          *api,*apj,*apJ,i,k;
9329825010SHong Zhang   PetscInt          cstart=C->cmap->rstart;
94598bc09dSHong Zhang   PetscInt          cdnz,conz,k0,k1;
95ce496241SStefano Zampini   const PetscScalar *dummy;
969467f45fSHong Zhang   MPI_Comm          comm;
979467f45fSHong Zhang   PetscMPIInt       size;
98598bc09dSHong Zhang 
99598bc09dSHong Zhang   PetscFunctionBegin;
1006718818eSStefano Zampini   MatCheckProduct(C,3);
1016718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
10228b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
1039566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
1049566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
105*aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
10680da8df7SHong Zhang 
10765e4b4d4SStefano Zampini   /* flag CPU mask for C */
10865e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
10965e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
11065e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
11165e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
11265e4b4d4SStefano Zampini #endif
11365e4b4d4SStefano Zampini 
114a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
115598bc09dSHong Zhang   /*-----------------------------------------------------*/
116a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1179566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
1189566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc));
119598bc09dSHong Zhang 
120598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
121598bc09dSHong Zhang   /*----------------------------------------------------------*/
122598bc09dSHong Zhang   /* get data from symbolic products */
123a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
124c12557a1SHong Zhang   p_oth = NULL;
1259467f45fSHong Zhang   if (size >1) {
1269467f45fSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
1279467f45fSHong Zhang   }
128598bc09dSHong Zhang 
129598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
130598bc09dSHong Zhang   apa = ptap->apa;
131598bc09dSHong Zhang 
13229825010SHong Zhang   api = ptap->api;
13329825010SHong Zhang   apj = ptap->apj;
134ce496241SStefano Zampini   /* trigger copy to CPU */
1359566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A,&dummy));
1369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A,&dummy));
1379566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B,&dummy));
1389566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B,&dummy));
139598bc09dSHong Zhang   for (i=0; i<cm; i++) {
140c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
141e497d3c8SHong Zhang     AProw_nonscalable(i,ad,ao,p_loc,p_oth,apa);
142598bc09dSHong Zhang 
143598bc09dSHong Zhang     /* set values in C */
144598bc09dSHong Zhang     apJ  = apj + api[i];
145598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
146598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
147598bc09dSHong Zhang 
148910cf402Sprj-     /* 1st off-diagonal part of C */
149598bc09dSHong Zhang     ca = coa + co->i[i];
150598bc09dSHong Zhang     k  = 0;
151598bc09dSHong Zhang     for (k0=0; k0<conz; k0++) {
152598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
153598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1545cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
155598bc09dSHong Zhang     }
156598bc09dSHong Zhang 
157598bc09dSHong Zhang     /* diagonal part of C */
158598bc09dSHong Zhang     ca = cda + cd->i[i];
159598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++) {
160598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
1615cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
162598bc09dSHong Zhang     }
163598bc09dSHong Zhang 
164910cf402Sprj-     /* 2nd off-diagonal part of C */
165598bc09dSHong Zhang     ca = coa + co->i[i];
166598bc09dSHong Zhang     for (; k0<conz; k0++) {
167598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1685cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
169598bc09dSHong Zhang     }
170598bc09dSHong Zhang   }
1719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
1729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
173598bc09dSHong Zhang   PetscFunctionReturn(0);
174598bc09dSHong Zhang }
175598bc09dSHong Zhang 
1764222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,PetscReal fill,Mat C)
177598bc09dSHong Zhang {
178ce94432eSBarry Smith   MPI_Comm           comm;
1799467f45fSHong Zhang   PetscMPIInt        size;
1803cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1810298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
1826718818eSStefano Zampini   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
183bfcd1a73SHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
1847dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
1854ae0847bSHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
186d14fa243SHong Zhang   PetscInt           *lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi;
1875cab4f04SHong Zhang   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
188598bc09dSHong Zhang   PetscBT            lnkbt;
189bfcd1a73SHong Zhang   PetscReal          afill;
190b92f168fSBarry Smith   MatType            mtype;
191598bc09dSHong Zhang 
192598bc09dSHong Zhang   PetscFunctionBegin;
1936718818eSStefano Zampini   MatCheckProduct(C,4);
19428b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
1959566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
1969566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
1979467f45fSHong Zhang 
1983cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
1999566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
200598bc09dSHong Zhang 
201598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2029566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
20319f0e57aSHong Zhang 
204598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2059566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
206598bc09dSHong Zhang 
207a1a4e84aSHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
208598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
2099467f45fSHong Zhang   if (size > 1) {
2109467f45fSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
211598bc09dSHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
21220e3dc75SHong Zhang   } else {
21320e3dc75SHong Zhang     p_oth = NULL;
21420e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
2159467f45fSHong Zhang   }
216598bc09dSHong Zhang 
217598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
218598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
2199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
220a1a4e84aSHong Zhang   ptap->api = api;
221598bc09dSHong Zhang   api[0]    = 0;
222598bc09dSHong Zhang 
2235cab4f04SHong Zhang   /* create and initialize a linked list */
2249566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt));
225598bc09dSHong Zhang 
226bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2279566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space));
228598bc09dSHong Zhang   current_space = free_space;
229598bc09dSHong Zhang 
230d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
231598bc09dSHong Zhang   for (i=0; i<am; i++) {
232598bc09dSHong Zhang     /* diagonal portion of A */
233598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
234598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
235598bc09dSHong Zhang       row  = *adj++;
236598bc09dSHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
237598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
238598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2399566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt));
240598bc09dSHong Zhang     }
241598bc09dSHong Zhang     /* off-diagonal portion of A */
242598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
243598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
244598bc09dSHong Zhang       row  = *aoj++;
245598bc09dSHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
246598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2479566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt));
248598bc09dSHong Zhang     }
2498c78258cSHong Zhang     /* add possible missing diagonal entry */
2508c78258cSHong Zhang     if (C->force_diagonals) {
2518c78258cSHong Zhang       j = i + rstart; /* column index */
2529566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1,&j,lnk,lnkbt));
2538c78258cSHong Zhang     }
254598bc09dSHong Zhang 
255d14fa243SHong Zhang     apnz     = lnk[0];
256598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
257598bc09dSHong Zhang 
258598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
259598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
2609566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space));
261598bc09dSHong Zhang       nspacedouble++;
262598bc09dSHong Zhang     }
263598bc09dSHong Zhang 
264598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2659566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN,apnz,current_space->array,lnk,lnkbt));
2669566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz));
2672205254eSKarl Rupp 
268598bc09dSHong Zhang     current_space->array           += apnz;
269598bc09dSHong Zhang     current_space->local_used      += apnz;
270598bc09dSHong Zhang     current_space->local_remaining -= apnz;
271598bc09dSHong Zhang   }
272598bc09dSHong Zhang 
273598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
274598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
2759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am]+1,&ptap->apj));
276a1a4e84aSHong Zhang   apj  = ptap->apj;
2779566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,ptap->apj));
2789566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
279598bc09dSHong Zhang 
280f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2819566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN,&ptap->apa));
282f84c536bSHong Zhang 
2834222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2844222ddf1SHong Zhang   /*---------------------------------------------*/
2859566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
2869566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
287a2f3521dSMark F. Adams 
2889566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
2899566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
2909566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
291d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
29217f75172Sandi selinger 
2939566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
2949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
2959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
2969566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
297598bc09dSHong Zhang 
2984222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
2994222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
300598bc09dSHong Zhang 
3014222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3026718818eSStefano Zampini   C->product->data    = ptap;
3036718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
304598bc09dSHong Zhang 
305bfcd1a73SHong Zhang   /* set MatInfo */
306118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
307bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3084222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3094222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3104222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
311bfcd1a73SHong Zhang 
312bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
313bfcd1a73SHong Zhang   if (api[am]) {
3149566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
3159566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
316bfcd1a73SHong Zhang   } else {
3179566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
318bfcd1a73SHong Zhang   }
319bfcd1a73SHong Zhang #endif
320598bc09dSHong Zhang   PetscFunctionReturn(0);
321598bc09dSHong Zhang }
322598bc09dSHong Zhang 
3234222ddf1SHong Zhang /* ------------------------------------------------------- */
3246718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat,Mat,PetscReal,Mat);
3256718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat,Mat,Mat);
3266718818eSStefano Zampini 
3274222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
3289123193aSHong Zhang {
3294222ddf1SHong Zhang   Mat_Product *product = C->product;
3304222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3319123193aSHong Zhang 
3329123193aSHong Zhang   PetscFunctionBegin;
3334222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
33498921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
3354222ddf1SHong Zhang 
3364222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3374222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3389123193aSHong Zhang   PetscFunctionReturn(0);
3399123193aSHong Zhang }
3404222ddf1SHong Zhang /* -------------------------------------------------------------------- */
3414222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
3424222ddf1SHong Zhang {
3434222ddf1SHong Zhang   Mat_Product *product = C->product;
3444222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3454222ddf1SHong Zhang 
3464222ddf1SHong Zhang   PetscFunctionBegin;
3474222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
34898921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
3494222ddf1SHong Zhang 
3504222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3514222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3524222ddf1SHong Zhang   PetscFunctionReturn(0);
3534222ddf1SHong Zhang }
3544222ddf1SHong Zhang 
3554222ddf1SHong Zhang /* --------------------------------------------------------------------- */
3564222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
3574222ddf1SHong Zhang {
3584222ddf1SHong Zhang   Mat_Product    *product = C->product;
3594222ddf1SHong Zhang 
3604222ddf1SHong Zhang   PetscFunctionBegin;
3614222ddf1SHong Zhang   switch (product->type) {
3624222ddf1SHong Zhang   case MATPRODUCT_AB:
3639566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
3644222ddf1SHong Zhang     break;
3654222ddf1SHong Zhang   case MATPRODUCT_AtB:
3669566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
3674222ddf1SHong Zhang     break;
3684222ddf1SHong Zhang   default:
3696718818eSStefano Zampini     break;
3704222ddf1SHong Zhang   }
3714222ddf1SHong Zhang   PetscFunctionReturn(0);
3724222ddf1SHong Zhang }
3734222ddf1SHong Zhang /* ------------------------------------------------------- */
3749123193aSHong Zhang 
3754324174eSBarry Smith typedef struct {
3765ea7661aSPierre Jolivet   Mat          workB,workB1;
3774324174eSBarry Smith   MPI_Request  *rwaits,*swaits;
37887753ddeSHong Zhang   PetscInt     nsends,nrecvs;
37987753ddeSHong Zhang   MPI_Datatype *stype,*rtype;
3806718818eSStefano Zampini   PetscInt     blda;
3814324174eSBarry Smith } MPIAIJ_MPIDense;
3824324174eSBarry Smith 
38396b95a6bSBarry Smith PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
3844324174eSBarry Smith {
3854324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*)ctx;
38687753ddeSHong Zhang   PetscInt        i;
3874324174eSBarry Smith 
3884324174eSBarry Smith   PetscFunctionBegin;
3899566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
3909566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
39187753ddeSHong Zhang   for (i=0; i<contents->nsends; i++) {
3929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&contents->stype[i]));
39387753ddeSHong Zhang   }
39487753ddeSHong Zhang   for (i=0; i<contents->nrecvs; i++) {
3959566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
39687753ddeSHong Zhang   }
3979566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype,contents->rtype,contents->rwaits,contents->swaits));
3989566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
3994324174eSBarry Smith   PetscFunctionReturn(0);
4004324174eSBarry Smith }
4014324174eSBarry Smith 
4026718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
4039123193aSHong Zhang {
404f32d5d43SBarry Smith   Mat_MPIAIJ      *aij=(Mat_MPIAIJ*)A->data;
405b45e3bf4SStefano Zampini   PetscInt        nz=aij->B->cmap->n,nsends,nrecvs,i,nrows_to,j,blda,m,M,n,N;
4064324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4074324174eSBarry Smith   VecScatter      ctx=aij->Mvctx;
4085ea7661aSPierre Jolivet   PetscInt        Am=A->rmap->n,Bm=B->rmap->n,BN=B->cmap->N,Bbn,Bbn1,bs,nrows_from,numBb;
40987753ddeSHong Zhang   MPI_Comm        comm;
41087753ddeSHong Zhang   MPI_Datatype    type1,*stype,*rtype;
41187753ddeSHong Zhang   const PetscInt  *sindices,*sstarts,*rstarts;
41287753ddeSHong Zhang   PetscMPIInt     *disp;
4136718818eSStefano Zampini   PetscBool       cisdense;
4149123193aSHong Zhang 
4159123193aSHong Zhang   PetscFunctionBegin;
4166718818eSStefano Zampini   MatCheckProduct(C,4);
41728b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
4189566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
4199566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C,MATMPIDENSE,&cisdense));
4206718818eSStefano Zampini   if (!cisdense) {
4219566063dSJacob Faibussowitsch     PetscCall(MatSetType(C,((PetscObject)B)->type_name));
4226718818eSStefano Zampini   }
4239566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C,&m,&n));
4249566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C,&M,&N));
425825bfe5fSPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) {
4269566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(C,Am,B->cmap->n,A->rmap->N,BN));
427825bfe5fSPierre Jolivet   }
4289566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
4299566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4309566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&blda));
4319566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4324324174eSBarry Smith 
4339566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL));
4349566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL));
43587753ddeSHong Zhang 
43687753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
43787753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
43887753ddeSHong Zhang   if (nz) {
43987753ddeSHong Zhang     Bbn1 = 2*Am*BN/nz;
440da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
44187753ddeSHong Zhang   } else Bbn1 = BN;
44287753ddeSHong Zhang 
44387753ddeSHong Zhang   bs = PetscAbs(B->cmap->bs);
44487753ddeSHong Zhang   Bbn1 = Bbn1/bs *bs; /* Bbn1 is a multiple of bs */
44587753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
4469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&Bbn1,&Bbn,1,MPIU_INT,MPI_MAX,comm));
44787753ddeSHong Zhang 
44887753ddeSHong Zhang   /* Enable runtime option for Bbn */
449d0609cedSBarry Smith   PetscOptionsBegin(comm,((PetscObject)C)->prefix,"MatMatMult","Mat");
4509566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn","Number of columns in Bb","MatMatMult",Bbn,&Bbn,NULL));
451d0609cedSBarry Smith   PetscOptionsEnd();
4526718818eSStefano Zampini   Bbn  = PetscMin(Bbn,BN);
45387753ddeSHong Zhang 
4546718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4555ea7661aSPierre Jolivet     numBb = BN/Bbn;
4565ea7661aSPierre Jolivet     Bbn1 = BN - numBb*Bbn;
4575ea7661aSPierre Jolivet   } else numBb = 0;
45887753ddeSHong Zhang 
4595ea7661aSPierre Jolivet   if (numBb) {
4609566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n",BN,Bbn,numBb));
4615ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4629566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C,"use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n",BN,Bbn1));
46387753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4649566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn1,NULL,&contents->workB1));
4655ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
46687753ddeSHong Zhang   }
46787753ddeSHong Zhang 
46887753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4699566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn,NULL,&contents->workB));
47087753ddeSHong Zhang 
47187753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4729566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends,&stype,nrecvs,&rtype,nrecvs,&contents->rwaits,nsends,&contents->swaits));
47387753ddeSHong Zhang   contents->stype  = stype;
47487753ddeSHong Zhang   contents->nsends = nsends;
47587753ddeSHong Zhang 
47687753ddeSHong Zhang   contents->rtype  = rtype;
47787753ddeSHong Zhang   contents->nrecvs = nrecvs;
4786718818eSStefano Zampini   contents->blda   = blda;
47987753ddeSHong Zhang 
4809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm+1,&disp));
48187753ddeSHong Zhang   for (i=0; i<nsends; i++) {
48287753ddeSHong Zhang     nrows_to = sstarts[i+1]-sstarts[i];
483b45e3bf4SStefano Zampini     for (j=0; j<nrows_to; j++) disp[j] = sindices[sstarts[i]+j]; /* rowB to be sent */
4849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to,1,disp,MPIU_SCALAR,&type1));
4859566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1,0,blda*sizeof(PetscScalar),&stype[i]));
4869566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4879566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
48887753ddeSHong Zhang   }
48987753ddeSHong Zhang 
49087753ddeSHong Zhang   for (i=0; i<nrecvs; i++) {
49187753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
49287753ddeSHong Zhang     nrows_from = rstarts[i+1]-rstarts[i];
49387753ddeSHong Zhang     disp[0] = 0;
4949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1,nrows_from,disp,MPIU_SCALAR,&type1));
4959566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1,0,nz*sizeof(PetscScalar),&rtype[i]));
4969566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
4979566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
49887753ddeSHong Zhang   }
49987753ddeSHong Zhang 
5009566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
5019566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL));
5029566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL));
5039566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
5049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
5059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
5069566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
5076718818eSStefano Zampini 
5086718818eSStefano Zampini   C->product->data = contents;
5096718818eSStefano Zampini   C->product->destroy = MatMPIAIJ_MPIDenseDestroy;
5104222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5119123193aSHong Zhang   PetscFunctionReturn(0);
5129123193aSHong Zhang }
5139123193aSHong Zhang 
51493aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat,const PetscBool);
515f32d5d43SBarry Smith /*
5162636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5172636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
51887753ddeSHong Zhang 
51987753ddeSHong Zhang     Input: Bbidx = 0: B = Bb
52087753ddeSHong Zhang                  = 1: B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
521f32d5d43SBarry Smith */
52287753ddeSHong Zhang PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,PetscInt Bbidx,Mat C,Mat *outworkB)
523f32d5d43SBarry Smith {
524f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)A->data;
5251683a169SBarry Smith   const PetscScalar *b;
52687753ddeSHong Zhang   PetscScalar       *rvalues;
527f32d5d43SBarry Smith   VecScatter        ctx = aij->Mvctx;
52887753ddeSHong Zhang   const PetscInt    *sindices,*sstarts,*rstarts;
5293515ee7fSJunchao Zhang   const PetscMPIInt *sprocs,*rprocs;
5306718818eSStefano Zampini   PetscInt          i,nsends,nrecvs;
531f32d5d43SBarry Smith   MPI_Request       *swaits,*rwaits;
532ce94432eSBarry Smith   MPI_Comm          comm;
5336718818eSStefano Zampini   PetscMPIInt       tag=((PetscObject)ctx)->tag,ncols=B->cmap->N,nrows=aij->B->cmap->n,nsends_mpi,nrecvs_mpi;
5344324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5354324174eSBarry Smith   Mat               workB;
53687753ddeSHong Zhang   MPI_Datatype      *stype,*rtype;
5376718818eSStefano Zampini   PetscInt          blda;
538f32d5d43SBarry Smith 
539f32d5d43SBarry Smith   PetscFunctionBegin;
5406718818eSStefano Zampini   MatCheckProduct(C,4);
54128b400f6SJacob Faibussowitsch   PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
5426718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
5439566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL/*bs*/));
5449566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL/*bs*/));
5459566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends,&nsends_mpi));
5469566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs,&nrecvs_mpi));
547b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
548b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
54908401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d",workB->cmap->n,nrows);
5503515ee7fSJunchao Zhang   swaits = contents->swaits;
5513515ee7fSJunchao Zhang   rwaits = contents->rwaits;
552f32d5d43SBarry Smith 
5539566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B,&b));
5549566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&blda));
55508401ef6SPierre Jolivet   PetscCheck(blda == contents->blda,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT,blda,contents->blda);
5569566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB,&rvalues));
557f32d5d43SBarry Smith 
55887753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5599566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
56087753ddeSHong Zhang   rtype = contents->rtype;
5613515ee7fSJunchao Zhang   for (i=0; i<nrecvs; i++) {
5629566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Irecv(rvalues+(rstarts[i]-rstarts[0]),ncols,rtype[i],rprocs[i],tag,comm,rwaits+i));
563f32d5d43SBarry Smith   }
564f32d5d43SBarry Smith 
56587753ddeSHong Zhang   stype = contents->stype;
5663515ee7fSJunchao Zhang   for (i=0; i<nsends; i++) {
5679566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(b,ncols,stype[i],sprocs[i],tag,comm,swaits+i));
568f32d5d43SBarry Smith   }
5692636ff26SBarry Smith 
5709566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi,rwaits,MPI_STATUSES_IGNORE));
5719566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi,swaits,MPI_STATUSES_IGNORE));
572f32d5d43SBarry Smith 
5739566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL));
5749566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL));
5759566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B,&b));
5769566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB,&rvalues));
57787753ddeSHong Zhang   PetscFunctionReturn(0);
57887753ddeSHong Zhang }
579f32d5d43SBarry Smith 
5806718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
5819123193aSHong Zhang {
582f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ*)A->data;
583f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense*)B->data;
584f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense*)C->data;
585f32d5d43SBarry Smith   Mat             workB;
58687753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5879123193aSHong Zhang 
5889123193aSHong Zhang   PetscFunctionBegin;
5896718818eSStefano Zampini   MatCheckProduct(C,3);
59028b400f6SJacob Faibussowitsch   PetscCheck(C->product->data,PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
5916718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
592f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5935ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
5949566063dSJacob Faibussowitsch   PetscCall(MatMatMult(aij->A,bdense->A,MAT_REUSE_MATRIX,PETSC_DEFAULT,&cdense->A));
5955ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
59687753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
5979566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A,B,0,C,&workB));
598f32d5d43SBarry Smith 
599f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
6009566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE));
60187753ddeSHong Zhang   } else {
6025ea7661aSPierre Jolivet     Mat       Bb,Cb;
6035ea7661aSPierre Jolivet     PetscInt  BN=B->cmap->N,n=contents->workB->cmap->n,i;
604664c1e85SStefano Zampini     PetscBool ccpu;
60587753ddeSHong Zhang 
60608401ef6SPierre Jolivet     PetscCheck(n > 0,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Column block size %" PetscInt_FMT " must be positive",n);
607664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
608664c1e85SStefano Zampini        when getting and restoring the submatrix
609664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6109566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C,&ccpu));
6119566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C,PETSC_TRUE));
6125ea7661aSPierre Jolivet     for (i=0; i<BN; i+=n) {
6139566063dSJacob Faibussowitsch       PetscCall(MatDenseGetSubMatrix(B,i,PetscMin(i+n,BN),&Bb));
6149566063dSJacob Faibussowitsch       PetscCall(MatDenseGetSubMatrix(C,i,PetscMin(i+n,BN),&Cb));
61587753ddeSHong Zhang 
6165ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6179566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A,Bb,(i+n)>BN,C,&workB));
6185ea7661aSPierre Jolivet 
6195ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6205ea7661aSPierre Jolivet       cdense = (Mat_MPIDense*)Cb->data;
6219566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE));
6229566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B,&Bb));
6239566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C,&Cb));
62487753ddeSHong Zhang     }
6259566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C,ccpu));
62687753ddeSHong Zhang   }
6279123193aSHong Zhang   PetscFunctionReturn(0);
6289123193aSHong Zhang }
629cf1a0672SHong Zhang 
630f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)
6311634b032SHong Zhang {
632cf1a0672SHong Zhang   Mat_MPIAIJ        *a   = (Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
633cf1a0672SHong Zhang   Mat_SeqAIJ        *ad  = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
634cf1a0672SHong Zhang   Mat_SeqAIJ        *cd  = (Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
635cf1a0672SHong Zhang   PetscInt          *adi = ad->i,*adj,*aoi=ao->i,*aoj;
636cf1a0672SHong Zhang   PetscScalar       *ada,*aoa,*cda=cd->a,*coa=co->a;
637cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc,*p_oth;
638cf1a0672SHong Zhang   PetscInt          *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
63929825010SHong Zhang   PetscScalar       *pa_loc,*pa_oth,*pa,valtmp,*ca;
64029825010SHong Zhang   PetscInt          cm    = C->rmap->n,anz,pnz;
6416718818eSStefano Zampini   Mat_APMPI         *ptap;
64280da8df7SHong Zhang   PetscScalar       *apa_sparse;
643ce496241SStefano Zampini   const PetscScalar *dummy;
644cf1a0672SHong Zhang   PetscInt          *api,*apj,*apJ,i,j,k,row;
64529825010SHong Zhang   PetscInt          cstart = C->cmap->rstart;
64629825010SHong Zhang   PetscInt          cdnz,conz,k0,k1,nextp;
647a7c7454dSHong Zhang   MPI_Comm          comm;
648a7c7454dSHong Zhang   PetscMPIInt       size;
6491634b032SHong Zhang 
6501634b032SHong Zhang   PetscFunctionBegin;
6516718818eSStefano Zampini   MatCheckProduct(C,3);
6526718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
65328b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
6549566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
6559566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
656*aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
657a7c7454dSHong Zhang 
65865e4b4d4SStefano Zampini   /* flag CPU mask for C */
65965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
66065e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
66165e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
66265e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
66365e4b4d4SStefano Zampini #endif
66480da8df7SHong Zhang   apa_sparse = ptap->apa;
66580da8df7SHong Zhang 
666cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
667cf1a0672SHong Zhang   /*-----------------------------------------------------*/
668cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6699566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
6709566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc));
671cf1a0672SHong Zhang 
672cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
673cf1a0672SHong Zhang   /*----------------------------------------------------------*/
674cf1a0672SHong Zhang   /* get data from symbolic products */
675cf1a0672SHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
676cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j; pa_loc = p_loc->a;
677a7c7454dSHong Zhang   if (size >1) {
678a7c7454dSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
679cf1a0672SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j; pa_oth = p_oth->a;
68020e3dc75SHong Zhang   } else {
68120e3dc75SHong Zhang     p_oth = NULL; pi_oth = NULL; pj_oth = NULL; pa_oth = NULL;
682a7c7454dSHong Zhang   }
683cf1a0672SHong Zhang 
684ce496241SStefano Zampini   /* trigger copy to CPU */
6859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A,&dummy));
6869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A,&dummy));
6879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B,&dummy));
6889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B,&dummy));
68929825010SHong Zhang   api = ptap->api;
69029825010SHong Zhang   apj = ptap->apj;
691cf1a0672SHong Zhang   for (i=0; i<cm; i++) {
69229825010SHong Zhang     apJ = apj + api[i];
69329825010SHong Zhang 
694cf1a0672SHong Zhang     /* diagonal portion of A */
695cf1a0672SHong Zhang     anz = adi[i+1] - adi[i];
696cf1a0672SHong Zhang     adj = ad->j + adi[i];
697cf1a0672SHong Zhang     ada = ad->a + adi[i];
698cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
699cf1a0672SHong Zhang       row = adj[j];
700cf1a0672SHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
701cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
702cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
70329825010SHong Zhang       /* perform sparse axpy */
704cf1a0672SHong Zhang       valtmp = ada[j];
70529825010SHong Zhang       nextp  = 0;
70629825010SHong Zhang       for (k=0; nextp<pnz; k++) {
70729825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
70829825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
70929825010SHong Zhang         }
7101634b032SHong Zhang       }
7119566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*pnz));
712cf1a0672SHong Zhang     }
7131634b032SHong Zhang 
714cf1a0672SHong Zhang     /* off-diagonal portion of A */
715cf1a0672SHong Zhang     anz = aoi[i+1] - aoi[i];
716cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
717cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
718cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
719cf1a0672SHong Zhang       row = aoj[j];
720cf1a0672SHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
721cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
722cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
72329825010SHong Zhang       /* perform sparse axpy */
724cf1a0672SHong Zhang       valtmp = aoa[j];
72529825010SHong Zhang       nextp  = 0;
72629825010SHong Zhang       for (k=0; nextp<pnz; k++) {
72729825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
72829825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
72929825010SHong Zhang         }
730cf1a0672SHong Zhang       }
7319566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*pnz));
732cf1a0672SHong Zhang     }
7331634b032SHong Zhang 
734cf1a0672SHong Zhang     /* set values in C */
735cf1a0672SHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
736cf1a0672SHong Zhang     conz = co->i[i+1] - co->i[i];
7371634b032SHong Zhang 
738910cf402Sprj-     /* 1st off-diagonal part of C */
739cf1a0672SHong Zhang     ca = coa + co->i[i];
740cf1a0672SHong Zhang     k  = 0;
741cf1a0672SHong Zhang     for (k0=0; k0<conz; k0++) {
742cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
74329825010SHong Zhang       ca[k0]        = apa_sparse[k];
74429825010SHong Zhang       apa_sparse[k] = 0.0;
745cf1a0672SHong Zhang       k++;
746cf1a0672SHong Zhang     }
7471634b032SHong Zhang 
748cf1a0672SHong Zhang     /* diagonal part of C */
749cf1a0672SHong Zhang     ca = cda + cd->i[i];
750cf1a0672SHong Zhang     for (k1=0; k1<cdnz; k1++) {
75129825010SHong Zhang       ca[k1]        = apa_sparse[k];
75229825010SHong Zhang       apa_sparse[k] = 0.0;
753cf1a0672SHong Zhang       k++;
754cf1a0672SHong Zhang     }
755cf1a0672SHong Zhang 
756910cf402Sprj-     /* 2nd off-diagonal part of C */
757cf1a0672SHong Zhang     ca = coa + co->i[i];
758cf1a0672SHong Zhang     for (; k0<conz; k0++) {
75929825010SHong Zhang       ca[k0]        = apa_sparse[k];
76029825010SHong Zhang       apa_sparse[k] = 0.0;
761cf1a0672SHong Zhang       k++;
762cf1a0672SHong Zhang     }
763cf1a0672SHong Zhang   }
7649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
7659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
766cf1a0672SHong Zhang   PetscFunctionReturn(0);
767cf1a0672SHong Zhang }
768cf1a0672SHong Zhang 
7690fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
7704222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat C)
771cf1a0672SHong Zhang {
772ce94432eSBarry Smith   MPI_Comm           comm;
773a7c7454dSHong Zhang   PetscMPIInt        size;
7743cdca5ebSHong Zhang   Mat_APMPI          *ptap;
7750298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL,current_space=NULL;
7766718818eSStefano Zampini   Mat_MPIAIJ         *a  = (Mat_MPIAIJ*)A->data;
777cf1a0672SHong Zhang   Mat_SeqAIJ         *ad = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
7787dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
779cf1a0672SHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
7808c78258cSHong Zhang   PetscInt           i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi,*lnk,apnz_max=1;
781e5ab8c0aSKarl Rupp   PetscInt           am=A->rmap->n,pn=P->cmap->n,pm=P->rmap->n,lsize=pn+20;
782cf1a0672SHong Zhang   PetscReal          afill;
783b92f168fSBarry Smith   MatType            mtype;
784cf1a0672SHong Zhang 
785cf1a0672SHong Zhang   PetscFunctionBegin;
7866718818eSStefano Zampini   MatCheckProduct(C,4);
78728b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
7889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
7899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
790a7c7454dSHong Zhang 
7913cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
7929566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
793cf1a0672SHong Zhang 
794cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
7959566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
79619f0e57aSHong Zhang 
797cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
7989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
799cf1a0672SHong Zhang 
800cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
801cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
802a7c7454dSHong Zhang   if (size > 1) {
803a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
80420e3dc75SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
805968382fdSHong Zhang   } else {
80620e3dc75SHong Zhang     p_oth  = NULL;
80720e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
808a7c7454dSHong Zhang   }
809cf1a0672SHong Zhang 
810cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
811cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
8129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
813cf1a0672SHong Zhang   ptap->api = api;
814cf1a0672SHong Zhang   api[0]    = 0;
815cf1a0672SHong Zhang 
8169566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize,&lnk));
817cf1a0672SHong Zhang 
818cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8199566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space));
820cf1a0672SHong Zhang   current_space = free_space;
821d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
822cf1a0672SHong Zhang   for (i=0; i<am; i++) {
823cf1a0672SHong Zhang     /* diagonal portion of A */
824cf1a0672SHong Zhang     nzi = adi[i+1] - adi[i];
825cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
826cf1a0672SHong Zhang       row  = *adj++;
827cf1a0672SHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
828cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8298a210135Sandi selinger       /* Expand list if it is not long enough */
8308328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8318328dd82Sandi selinger         lsize = pnz+apnz_max;
8329566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8338a210135Sandi selinger       }
834cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8359566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk));
8368a210135Sandi selinger       apnz     = *lnk; /* The first element in the list is the number of items in the list */
8378a210135Sandi selinger       api[i+1] = api[i] + apnz;
8388c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
839cf1a0672SHong Zhang     }
840cf1a0672SHong Zhang     /* off-diagonal portion of A */
841cf1a0672SHong Zhang     nzi = aoi[i+1] - aoi[i];
842cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
843cf1a0672SHong Zhang       row  = *aoj++;
844cf1a0672SHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
845cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8468a210135Sandi selinger       /* Expand list if it is not long enough */
8478328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8488328dd82Sandi selinger         lsize = pnz + apnz_max;
8499566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8508a210135Sandi selinger       }
8518a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8529566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk));
8538a210135Sandi selinger       apnz     = *lnk;  /* The first element in the list is the number of items in the list */
8548a210135Sandi selinger       api[i+1] = api[i] + apnz;
8558c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
856cf1a0672SHong Zhang     }
8578c78258cSHong Zhang 
8588c78258cSHong Zhang     /* add missing diagonal entry */
8598c78258cSHong Zhang     if (C->force_diagonals) {
8608c78258cSHong Zhang       j = i + rstart; /* column index */
8619566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1,&j,lnk));
8628c78258cSHong Zhang     }
8638c78258cSHong Zhang 
864f84c536bSHong Zhang     apnz     = *lnk;
865cf1a0672SHong Zhang     api[i+1] = api[i] + apnz;
8668a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
867cf1a0672SHong Zhang 
868cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
869cf1a0672SHong Zhang     if (current_space->local_remaining<apnz) {
8709566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space));
871cf1a0672SHong Zhang       nspacedouble++;
872cf1a0672SHong Zhang     }
873cf1a0672SHong Zhang 
874cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8759566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz,current_space->array,lnk));
8769566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz));
8772205254eSKarl Rupp 
878cf1a0672SHong Zhang     current_space->array           += apnz;
879cf1a0672SHong Zhang     current_space->local_used      += apnz;
880cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
881cf1a0672SHong Zhang   }
882cf1a0672SHong Zhang 
883cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
884cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
8859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am]+1,&ptap->apj));
886cf1a0672SHong Zhang   apj  = ptap->apj;
8879566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,ptap->apj));
8889566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
889cf1a0672SHong Zhang 
8904222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
891cf1a0672SHong Zhang   /*----------------------------------------------------*/
8929566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
8939566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
8949566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
8959566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
8969566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
897d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
898cf1a0672SHong Zhang 
8994222ddf1SHong Zhang   /* malloc apa for assembly C */
9009566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max,&ptap->apa));
90117f75172Sandi selinger 
9029566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
9039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
9059566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
906cf1a0672SHong Zhang 
9074222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9084222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
909cf1a0672SHong Zhang 
9104222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9116718818eSStefano Zampini   C->product->data    = ptap;
9126718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
913cf1a0672SHong Zhang 
914cf1a0672SHong Zhang   /* set MatInfo */
915118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
916cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9174222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9184222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9194222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
920cf1a0672SHong Zhang 
921cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
922cf1a0672SHong Zhang   if (api[am]) {
9239566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
9249566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
925cf1a0672SHong Zhang   } else {
9269566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
927cf1a0672SHong Zhang   }
928cf1a0672SHong Zhang #endif
9291634b032SHong Zhang   PetscFunctionReturn(0);
9301634b032SHong Zhang }
931f96d37fcSHong Zhang 
932a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
933a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
934a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
935a9d7e0ccSandi selinger static void Merge3SortedArrays(PetscInt  size1, PetscInt *in1,
936a9d7e0ccSandi selinger                                PetscInt  size2, PetscInt *in2,
937a9d7e0ccSandi selinger                                PetscInt  size3, PetscInt *in3,
938a9d7e0ccSandi selinger                                PetscInt *size4, PetscInt *out)
939a9d7e0ccSandi selinger {
940a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
941a9d7e0ccSandi selinger 
942a9d7e0ccSandi selinger   /* Traverse all three arrays */
943a9d7e0ccSandi selinger   while (i<size1 && j<size2 && k<size3) {
944a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
945a9d7e0ccSandi selinger       out[l++] = in1[i++];
946a9d7e0ccSandi selinger     }
947a9d7e0ccSandi selinger     else if (in2[j] < in1[i] && in2[j] < in3[k]) {
948a9d7e0ccSandi selinger       out[l++] = in2[j++];
949a9d7e0ccSandi selinger     }
950a9d7e0ccSandi selinger     else if (in3[k] < in1[i] && in3[k] < in2[j]) {
951a9d7e0ccSandi selinger       out[l++] = in3[k++];
952a9d7e0ccSandi selinger     }
953a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] < in3[k]) {
954a9d7e0ccSandi selinger       out[l++] = in1[i];
955a9d7e0ccSandi selinger       i++, j++;
956a9d7e0ccSandi selinger     }
957a9d7e0ccSandi selinger     else if (in1[i] == in3[k] && in1[i] < in2[j]) {
958a9d7e0ccSandi selinger       out[l++] = in1[i];
959a9d7e0ccSandi selinger       i++, k++;
960a9d7e0ccSandi selinger     }
961a9d7e0ccSandi selinger     else if (in3[k] == in2[j] && in2[j] < in1[i])  {
962a9d7e0ccSandi selinger       out[l++] = in2[j];
963a9d7e0ccSandi selinger       k++, j++;
964a9d7e0ccSandi selinger     }
965a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] == in3[k]) {
966a9d7e0ccSandi selinger       out[l++] = in1[i];
967a9d7e0ccSandi selinger       i++, j++, k++;
968a9d7e0ccSandi selinger     }
969a9d7e0ccSandi selinger   }
970a9d7e0ccSandi selinger 
971a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
972a9d7e0ccSandi selinger   while (i<size1 && j<size2) {
973a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
974a9d7e0ccSandi selinger       out[l++] = in1[i++];
975a9d7e0ccSandi selinger     }
976a9d7e0ccSandi selinger     else if (in1[i] > in2[j]) {
977a9d7e0ccSandi selinger       out[l++] = in2[j++];
978a9d7e0ccSandi selinger     }
979a9d7e0ccSandi selinger     else {
980a9d7e0ccSandi selinger       out[l++] = in1[i];
981a9d7e0ccSandi selinger       i++, j++;
982a9d7e0ccSandi selinger     }
983a9d7e0ccSandi selinger   }
984a9d7e0ccSandi selinger 
985a9d7e0ccSandi selinger   while (i<size1 && k<size3) {
986a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
987a9d7e0ccSandi selinger       out[l++] = in1[i++];
988a9d7e0ccSandi selinger     }
989a9d7e0ccSandi selinger     else if (in1[i] > in3[k]) {
990a9d7e0ccSandi selinger       out[l++] = in3[k++];
991a9d7e0ccSandi selinger     }
992a9d7e0ccSandi selinger     else {
993a9d7e0ccSandi selinger       out[l++] = in1[i];
994a9d7e0ccSandi selinger       i++, k++;
995a9d7e0ccSandi selinger     }
996a9d7e0ccSandi selinger   }
997a9d7e0ccSandi selinger 
998a9d7e0ccSandi selinger   while (k<size3 && j<size2)  {
999a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
1000a9d7e0ccSandi selinger       out[l++] = in3[k++];
1001a9d7e0ccSandi selinger     }
1002a9d7e0ccSandi selinger     else if (in3[k] > in2[j]) {
1003a9d7e0ccSandi selinger       out[l++] = in2[j++];
1004a9d7e0ccSandi selinger     }
1005a9d7e0ccSandi selinger     else {
1006a9d7e0ccSandi selinger       out[l++] = in3[k];
1007a9d7e0ccSandi selinger       k++, j++;
1008a9d7e0ccSandi selinger     }
1009a9d7e0ccSandi selinger   }
1010a9d7e0ccSandi selinger 
1011a9d7e0ccSandi selinger   /* Traverse one remaining array */
1012a9d7e0ccSandi selinger   while (i<size1) out[l++] = in1[i++];
1013a9d7e0ccSandi selinger   while (j<size2) out[l++] = in2[j++];
1014a9d7e0ccSandi selinger   while (k<size3) out[l++] = in3[k++];
1015a9d7e0ccSandi selinger 
1016a9d7e0ccSandi selinger   *size4 = l;
1017a9d7e0ccSandi selinger }
1018a9d7e0ccSandi selinger 
101973b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
102073b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
102173b67375Sandi selinger /* matrix-matrix multiplications.  */
10224222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1023a9d7e0ccSandi selinger {
1024a9d7e0ccSandi selinger   MPI_Comm           comm;
1025a9d7e0ccSandi selinger   PetscMPIInt        size;
10263cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1027a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag=NULL, current_space=NULL;
1028a9d7e0ccSandi selinger   Mat_MPIAIJ         *a  =(Mat_MPIAIJ*)A->data;
1029a9d7e0ccSandi selinger   Mat_SeqAIJ         *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc;
1030a9d7e0ccSandi selinger   Mat_MPIAIJ         *p  =(Mat_MPIAIJ*)P->data;
1031a9d7e0ccSandi selinger   Mat_SeqAIJ         *adpd_seq, *p_off, *aopoth_seq;
1032a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10337dbaa2c6Sandi selinger   PetscInt           *pi_loc,*dnz,*onz;
1034a9d7e0ccSandi selinger   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,rstart=A->rmap->rstart;
1035a9d7e0ccSandi selinger   PetscInt           *lnk,i, i1=0,pnz,row,*adpoi,*adpoj, *api, *adpoJ, *aopJ, *apJ,*Jptr, aopnz, nspacedouble=0,j,nzi,
1036a9d7e0ccSandi selinger                      *apj,apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1037a016958eSandi selinger   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n, p_colstart, p_colend;
1038a9d7e0ccSandi selinger   PetscBT            lnkbt;
1039a9d7e0ccSandi selinger   PetscReal          afill;
1040a9d7e0ccSandi selinger   PetscMPIInt        rank;
1041a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1042b92f168fSBarry Smith   MatType            mtype;
1043e83e5f86SFande Kong   const char         *prefix;
1044a9d7e0ccSandi selinger 
1045a9d7e0ccSandi selinger   PetscFunctionBegin;
10466718818eSStefano Zampini   MatCheckProduct(C,4);
104728b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
10489566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
10499566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
10509566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10519566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1052a9d7e0ccSandi selinger 
10533cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
10549566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1055a9d7e0ccSandi selinger 
1056a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10579566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth));
1058a9d7e0ccSandi selinger 
1059a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10609566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc));
1061a9d7e0ccSandi selinger 
1062a9d7e0ccSandi selinger   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
1063a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1064a9d7e0ccSandi selinger 
1065a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
10669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&api));
10679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&adpoi));
1068a9d7e0ccSandi selinger 
1069a9d7e0ccSandi selinger   adpoi[0]    = 0;
1070a9d7e0ccSandi selinger   ptap->api = api;
1071a9d7e0ccSandi selinger   api[0] = 0;
1072a9d7e0ccSandi selinger 
1073a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10749566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt));
1075d0609cedSBarry Smith   MatPreallocateBegin(comm,am,pn,dnz,onz);
1076a9d7e0ccSandi selinger 
1077a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10789566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
10799566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A,p->A,NULL,&adpd));
10809566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
10819566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd,prefix));
10829566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd,"inner_diag_"));
10834222ddf1SHong Zhang 
10849566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd,MATPRODUCT_AB));
10859566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd,"sorted"));
10869566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd,fill));
10879566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10888c78258cSHong Zhang 
10898c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10909566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10914222ddf1SHong Zhang 
1092a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ*)((adpd)->data);
1093a9d7e0ccSandi selinger   adpdi = adpd_seq->i; adpdj = adpd_seq->j;
1094a9d7e0ccSandi selinger   p_off = (Mat_SeqAIJ*)((p->B)->data);
1095a9d7e0ccSandi selinger   poff_i = p_off->i; poff_j = p_off->j;
1096a9d7e0ccSandi selinger 
109773b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
10989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pN+2,&j_temp));
1099a9d7e0ccSandi selinger 
1100a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1101a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
11029566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space_diag));
1103a9d7e0ccSandi selinger   current_space = free_space_diag;
1104a9d7e0ccSandi selinger 
1105a9d7e0ccSandi selinger   for (i=0; i<am; i++) {
1106a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1107a9d7e0ccSandi selinger     nzi = adi[i+1] - adi[i];
1108a9d7e0ccSandi selinger     for (j=0; j<nzi; j++) {
1109a9d7e0ccSandi selinger       row  = *adj++;
1110a9d7e0ccSandi selinger       pnz  = poff_i[row+1] - poff_i[row];
1111a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1112a9d7e0ccSandi selinger       for (i1 = 0; i1 < pnz; i1++) {
1113a9d7e0ccSandi selinger         j_temp[i1] = p->garray[Jptr[i1]];
1114a9d7e0ccSandi selinger       }
1115a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11169566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz,j_temp,lnk,lnkbt));
1117a9d7e0ccSandi selinger     }
1118a9d7e0ccSandi selinger 
1119a9d7e0ccSandi selinger     adponz     = lnk[0];
1120a9d7e0ccSandi selinger     adpoi[i+1] = adpoi[i] + adponz;
1121a9d7e0ccSandi selinger 
1122a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1123a9d7e0ccSandi selinger     if (current_space->local_remaining<adponz) {
11249566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz,current_space->total_array_size),&current_space));
1125a9d7e0ccSandi selinger       nspacedouble++;
1126a9d7e0ccSandi selinger     }
1127a9d7e0ccSandi selinger 
1128a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11299566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN,adponz,current_space->array,lnk,lnkbt));
1130a9d7e0ccSandi selinger 
1131a9d7e0ccSandi selinger     current_space->array           += adponz;
1132a9d7e0ccSandi selinger     current_space->local_used      += adponz;
1133a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1134a9d7e0ccSandi selinger   }
1135a9d7e0ccSandi selinger 
1136a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11379566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B,prefix));
11389566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B,"inner_offdiag_"));
11399566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&aopoth));
11409566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1141a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ*)((aopoth)->data);
1142a9d7e0ccSandi selinger   aopothi = aopoth_seq->i; aopothj = aopoth_seq->j;
1143a9d7e0ccSandi selinger 
1144a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1145a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1146a9d7e0ccSandi selinger 
11479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am]+2, &ptap->apj));
11489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(adpoi[am]+2, &adpoj));
1149a9d7e0ccSandi selinger 
1150a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11519566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag,adpoj));
11529566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
1153a9d7e0ccSandi selinger 
1154a9d7e0ccSandi selinger   adpoJ = adpoj;
1155a9d7e0ccSandi selinger   adpdJ = adpdj;
1156a9d7e0ccSandi selinger   aopJ = aopothj;
1157a9d7e0ccSandi selinger   apj  = ptap->apj;
1158a9d7e0ccSandi selinger   apJ = apj; /* still empty */
1159a9d7e0ccSandi selinger 
1160a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1161a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1162a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1163a9d7e0ccSandi selinger     aopnz  =  aopothi[i+1] -  aopothi[i];
1164a9d7e0ccSandi selinger     adponz = adpoi[i+1] - adpoi[i];
1165a9d7e0ccSandi selinger     adpdnz = adpdi[i+1] - adpdi[i];
1166a9d7e0ccSandi selinger 
1167a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1168a9d7e0ccSandi selinger     for (i1 = 0; i1 < adpdnz; i1++) {
1169a016958eSandi selinger       adpdJ[i1] += p_colstart;
1170a9d7e0ccSandi selinger     }
1171a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1172a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11739566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+rstart, apnz, apJ, dnz, onz));
1174a9d7e0ccSandi selinger 
1175a9d7e0ccSandi selinger     aopJ += aopnz;
1176a9d7e0ccSandi selinger     adpoJ += adponz;
1177a9d7e0ccSandi selinger     adpdJ += adpdnz;
1178a9d7e0ccSandi selinger     apJ += apnz;
1179a9d7e0ccSandi selinger     api[i+1] = api[i] + apnz;
1180a9d7e0ccSandi selinger   }
1181a9d7e0ccSandi selinger 
1182a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
11839566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN+2,&ptap->apa));
1184a9d7e0ccSandi selinger 
11854222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11869566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE));
11879566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,P));
11889566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
11899566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
11909566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
1191d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
119217f75172Sandi selinger 
11939566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
11949566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
11959566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
11969566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
119717f75172Sandi selinger 
11984222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11994222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1200a9d7e0ccSandi selinger 
12014222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
12026718818eSStefano Zampini   C->product->data    = ptap;
12036718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1204a9d7e0ccSandi selinger 
1205a9d7e0ccSandi selinger   /* set MatInfo */
120673b67375Sandi selinger   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
120773b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
12084222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
12094222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
12104222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1211a9d7e0ccSandi selinger 
1212a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1213a9d7e0ccSandi selinger   if (api[am]) {
12149566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
12159566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
1216a9d7e0ccSandi selinger   } else {
12179566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
1218a9d7e0ccSandi selinger   }
1219a9d7e0ccSandi selinger #endif
1220a9d7e0ccSandi selinger 
12219566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12229566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12239566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12249566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12259566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
1226a9d7e0ccSandi selinger   PetscFunctionReturn(0);
1227a9d7e0ccSandi selinger }
1228a9d7e0ccSandi selinger 
1229f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/
1230c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1231c216dbf3SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P,Mat A,Mat C)
1232c216dbf3SHong Zhang {
12336718818eSStefano Zampini   Mat_APMPI      *ptap;
123460552ceaSHong Zhang   Mat            Pt;
1235c216dbf3SHong Zhang 
1236c216dbf3SHong Zhang   PetscFunctionBegin;
12376718818eSStefano Zampini   MatCheckProduct(C,3);
12386718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
123928b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
124028b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
124160552ceaSHong Zhang 
124260552ceaSHong Zhang   Pt   = ptap->Pt;
12439566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P,MAT_REUSE_MATRIX,&Pt));
12449566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt,A,C));
1245f96d37fcSHong Zhang   PetscFunctionReturn(0);
1246f96d37fcSHong Zhang }
1247f96d37fcSHong Zhang 
1248c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
12494222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,PetscReal fill,Mat C)
1250912837bbSHong Zhang {
12513cdca5ebSHong Zhang   Mat_APMPI           *ptap;
12526718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data;
1253912837bbSHong Zhang   MPI_Comm            comm;
1254912837bbSHong Zhang   PetscMPIInt         size,rank;
1255912837bbSHong Zhang   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
12564ede91e3SHong Zhang   PetscInt            pn=P->cmap->n,aN=A->cmap->N,an=A->cmap->n;
125769be949aSStefano Zampini   PetscInt            *lnk,i,k,nsend,rstart;
1258912837bbSHong Zhang   PetscBT             lnkbt;
1259ec4bef21SJose E. Roman   PetscMPIInt         tagi,tagj,*len_si,*len_s,*len_ri,nrecv;
1260ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted=0;
12618c78258cSHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k,row,ncols,*cols;
12627f3e1f30SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners,nzi;
1263912837bbSHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1264912837bbSHong Zhang   MPI_Request         *swaits,*rwaits;
1265912837bbSHong Zhang   MPI_Status          *sstatus,rstatus;
1266912837bbSHong Zhang   PetscLayout         rowmap;
1267912837bbSHong Zhang   PetscInt            *owners_co,*coi,*coj;    /* i and j array of (p->B)^T*A*P - used in the communication */
1268912837bbSHong Zhang   PetscMPIInt         *len_r,*id_r;    /* array of length of comm->size, store send/recv matrix values */
12697f3e1f30SHong Zhang   PetscInt            *Jptr,*prmap=p->garray,con,j,Crmax;
12704ede91e3SHong Zhang   Mat_SeqAIJ          *a_loc,*c_loc,*c_oth;
1271912837bbSHong Zhang   PetscTable          ta;
1272b92f168fSBarry Smith   MatType             mtype;
1273e83e5f86SFande Kong   const char          *prefix;
1274912837bbSHong Zhang 
1275912837bbSHong Zhang   PetscFunctionBegin;
12769566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
12779566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
12789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1279912837bbSHong Zhang 
12804222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12819566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
12829566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
1283912837bbSHong Zhang 
12844222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1285912837bbSHong Zhang 
12863cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
12879566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1288912837bbSHong Zhang   ptap->reuse = MAT_INITIAL_MATRIX;
1289912837bbSHong Zhang 
1290912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1291912837bbSHong Zhang   /* --------------------------------- */
12929566063dSJacob Faibussowitsch   PetscCall(MatTranspose_SeqAIJ(p->A,MAT_INITIAL_MATRIX,&ptap->Rd));
12939566063dSJacob Faibussowitsch   PetscCall(MatTranspose_SeqAIJ(p->B,MAT_INITIAL_MATRIX,&ptap->Ro));
1294912837bbSHong Zhang 
1295669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
1296669e9c86SHong Zhang   /* ---------------------------*/
12979566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&ptap->A_loc));
1298912837bbSHong Zhang 
12994ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
1300912837bbSHong Zhang   /* ------------------------------------ */
13019566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A,&prefix));
13029566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro,prefix));
13039566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro,"inner_offdiag_"));
13049566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&ptap->C_oth));
13059566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro,ptap->A_loc,fill,ptap->C_oth));
1306912837bbSHong Zhang 
1307912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1308912837bbSHong Zhang   /* ------------------------------------------ */
1309912837bbSHong Zhang   /* determine row ownership */
13109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm,&rowmap));
1311912837bbSHong Zhang   rowmap->n  = pn;
1312912837bbSHong Zhang   rowmap->bs = 1;
13139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1314912837bbSHong Zhang   owners = rowmap->range;
1315912837bbSHong Zhang 
1316912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
13179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(size,&len_s,size,&len_si,size,&sstatus,size+2,&owners_co));
13189566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s,size));
13199566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si,size));
1320912837bbSHong Zhang 
1321912837bbSHong Zhang   c_oth = (Mat_SeqAIJ*)ptap->C_oth->data;
1322912837bbSHong Zhang   coi   = c_oth->i; coj = c_oth->j;
1323912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1324912837bbSHong Zhang   proc  = 0;
1325912837bbSHong Zhang   for (i=0; i<con; i++) {
1326912837bbSHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
13277f3e1f30SHong Zhang     len_si[proc]++;               /* num of rows in Co(=Pt*A) to be sent to [proc] */
1328912837bbSHong Zhang     len_s[proc] += coi[i+1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1329912837bbSHong Zhang   }
1330912837bbSHong Zhang 
1331912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1332912837bbSHong Zhang   owners_co[0] = 0;
1333912837bbSHong Zhang   nsend        = 0;
1334912837bbSHong Zhang   for (proc=0; proc<size; proc++) {
1335912837bbSHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1336912837bbSHong Zhang     if (len_s[proc]) {
1337912837bbSHong Zhang       nsend++;
1338912837bbSHong Zhang       len_si[proc] = 2*(len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1339912837bbSHong Zhang       len         += len_si[proc];
1340912837bbSHong Zhang     }
1341912837bbSHong Zhang   }
1342912837bbSHong Zhang 
1343912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13449566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm,NULL,len_s,&nrecv));
13459566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm,nsend,nrecv,len_s,len_si,&id_r,&len_r,&len_ri));
1346912837bbSHong Zhang 
1347912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13489566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagj));
13499566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagj,nrecv,id_r,len_r,&buf_rj,&rwaits));
13509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend+1,&swaits));
1351912837bbSHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1352912837bbSHong Zhang     if (!len_s[proc]) continue;
1353912837bbSHong Zhang     i    = owners_co[proc];
13549566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k));
1355912837bbSHong Zhang     k++;
1356912837bbSHong Zhang   }
1357912837bbSHong Zhang 
13587f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
1359912837bbSHong Zhang   /* ---------------------------------------- */
13609566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd,prefix));
13619566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd,"inner_diag_"));
13629566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&ptap->C_loc));
13639566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd,ptap->A_loc,fill,ptap->C_loc));
1364912837bbSHong Zhang   c_loc = (Mat_SeqAIJ*)ptap->C_loc->data;
1365912837bbSHong Zhang 
1366912837bbSHong Zhang   /* receives coj are complete */
1367912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
13689566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus));
1369912837bbSHong Zhang   }
13709566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13719566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend,swaits,sstatus));
1372912837bbSHong Zhang 
1373912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
13744ede91e3SHong Zhang   a_loc = (Mat_SeqAIJ*)(ptap->A_loc)->data;
1375669e9c86SHong Zhang 
1376669e9c86SHong Zhang   /* create and initialize a linked list */
13779566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(an,aN,&ta)); /* for compute Crmax */
13784ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,ptap->A_loc->rmap->N,ta);
1379669e9c86SHong Zhang 
1380912837bbSHong Zhang   for (k=0; k<nrecv; k++) {/* k-th received message */
1381912837bbSHong Zhang     Jptr = buf_rj[k];
1382912837bbSHong Zhang     for (j=0; j<len_r[k]; j++) {
13839566063dSJacob Faibussowitsch       PetscCall(PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES));
1384912837bbSHong Zhang     }
1385912837bbSHong Zhang   }
13869566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Crmax));
13879566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
1388912837bbSHong Zhang 
1389912837bbSHong Zhang   /* (4) send and recv coi */
1390912837bbSHong Zhang   /*-----------------------*/
13919566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagi));
13929566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagi,nrecv,id_r,len_ri,&buf_ri,&rwaits));
13939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len+1,&buf_s));
1394912837bbSHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1395912837bbSHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1396912837bbSHong Zhang     if (!len_s[proc]) continue;
1397912837bbSHong Zhang     /* form outgoing message for i-structure:
1398912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1399912837bbSHong Zhang                [1:nrows]:           row index (global)
1400912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1401912837bbSHong Zhang     */
1402912837bbSHong Zhang     /*-------------------------------------------*/
1403912837bbSHong Zhang     nrows       = len_si[proc]/2 - 1; /* num of rows in Co to be sent to [proc] */
1404912837bbSHong Zhang     buf_si_i    = buf_si + nrows+1;
1405912837bbSHong Zhang     buf_si[0]   = nrows;
1406912837bbSHong Zhang     buf_si_i[0] = 0;
1407912837bbSHong Zhang     nrows       = 0;
1408912837bbSHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1409912837bbSHong Zhang       nzi = coi[i+1] - coi[i];
1410912837bbSHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1411912837bbSHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1412912837bbSHong Zhang       nrows++;
1413912837bbSHong Zhang     }
14149566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k));
1415912837bbSHong Zhang     k++;
1416912837bbSHong Zhang     buf_si += len_si[proc];
1417912837bbSHong Zhang   }
1418912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
14199566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus));
1420912837bbSHong Zhang   }
14219566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
14229566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend,swaits,sstatus));
1423912837bbSHong Zhang 
14249566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s,len_si,sstatus,owners_co));
14259566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
14269566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
14279566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1428912837bbSHong Zhang 
14294222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1430912837bbSHong Zhang   /* ------------------------------------------ */
14314222ddf1SHong Zhang   /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */
14329566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax,&free_space));
1433912837bbSHong Zhang   current_space = free_space;
1434912837bbSHong Zhang 
14359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv,&buf_ri_k,nrecv,&nextrow,nrecv,&nextci));
1436912837bbSHong Zhang   for (k=0; k<nrecv; k++) {
1437912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1438912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1439912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
1440a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1441912837bbSHong Zhang   }
1442912837bbSHong Zhang 
1443d0609cedSBarry Smith   MatPreallocateBegin(comm,pn,an,dnz,onz);
14449566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax,aN,&lnk,&lnkbt));
14458c78258cSHong Zhang   for (i=0; i<pn; i++) { /* for each local row of C */
14464222ddf1SHong Zhang     /* add C_loc into C */
1447912837bbSHong Zhang     nzi  = c_loc->i[i+1] - c_loc->i[i];
1448912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14499566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt));
1450912837bbSHong Zhang 
1451912837bbSHong Zhang     /* add received col data into lnk */
1452912837bbSHong Zhang     for (k=0; k<nrecv; k++) { /* k-th received message */
1453912837bbSHong Zhang       if (i == *nextrow[k]) { /* i-th row */
1454912837bbSHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
1455912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14569566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt));
1457912837bbSHong Zhang         nextrow[k]++; nextci[k]++;
1458912837bbSHong Zhang       }
1459912837bbSHong Zhang     }
14608c78258cSHong Zhang 
14618c78258cSHong Zhang     /* add missing diagonal entry */
14628c78258cSHong Zhang     if (C->force_diagonals) {
14638c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14649566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1,&k,lnk,lnkbt));
14658c78258cSHong Zhang     }
14668c78258cSHong Zhang 
1467912837bbSHong Zhang     nzi = lnk[0];
1468912837bbSHong Zhang 
1469912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14709566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN,nzi,current_space->array,lnk,lnkbt));
14719566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+owners[rank],nzi,current_space->array,dnz,onz));
1472912837bbSHong Zhang   }
14739566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
14749566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk,lnkbt));
14759566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1476912837bbSHong Zhang 
1477912837bbSHong Zhang   /* local sizes and preallocation */
14789566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,pn,an,PETSC_DETERMINE,PETSC_DETERMINE));
14799566063dSJacob Faibussowitsch   if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap,P->cmap->bs));
14809566063dSJacob Faibussowitsch   if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap,A->cmap->bs));
14819566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
1482d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
1483912837bbSHong Zhang 
148469be949aSStefano Zampini   /* add C_loc and C_oth to C */
14859566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C,&rstart,NULL));
148669be949aSStefano Zampini   for (i=0; i<pn; i++) {
14878c78258cSHong Zhang     ncols = c_loc->i[i+1] - c_loc->i[i];
14888c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14898c78258cSHong Zhang     row   = rstart + i;
14909566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES));
14918c78258cSHong Zhang 
14928c78258cSHong Zhang     if (C->force_diagonals) {
14939566063dSJacob Faibussowitsch       PetscCall(MatSetValues(C,1,(const PetscInt*)&row,1,(const PetscInt*)&row,NULL,INSERT_VALUES));
14948c78258cSHong Zhang     }
149569be949aSStefano Zampini   }
149669be949aSStefano Zampini   for (i=0; i<con; i++) {
14978c78258cSHong Zhang     ncols = c_oth->i[i+1] - c_oth->i[i];
14988c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14998c78258cSHong Zhang     row   = prmap[i];
15009566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,(const PetscInt*)&row,ncols,(const PetscInt*)cols,NULL,INSERT_VALUES));
150169be949aSStefano Zampini   }
15029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
15039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
15049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
150569be949aSStefano Zampini 
1506912837bbSHong Zhang   /* members in merge */
15079566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
15089566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
15099566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
15109566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
15119566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
15129566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
15139566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1514912837bbSHong Zhang 
15154222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
15166718818eSStefano Zampini   C->product->data    = ptap;
15176718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
1518912837bbSHong Zhang   PetscFunctionReturn(0);
1519912837bbSHong Zhang }
1520912837bbSHong Zhang 
1521912837bbSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,Mat C)
1522912837bbSHong Zhang {
15236718818eSStefano Zampini   Mat_MPIAIJ        *p=(Mat_MPIAIJ*)P->data;
1524669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
15256718818eSStefano Zampini   Mat_APMPI         *ptap;
1526669e9c86SHong Zhang   Mat               A_loc,C_loc,C_oth;
1527912837bbSHong Zhang   PetscInt          i,rstart,rend,cm,ncols,row;
1528912837bbSHong Zhang   const PetscInt    *cols;
1529912837bbSHong Zhang   const PetscScalar *vals;
1530912837bbSHong Zhang 
1531912837bbSHong Zhang   PetscFunctionBegin;
15326718818eSStefano Zampini   MatCheckProduct(C,3);
15336718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
153428b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
153528b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
15369566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1537912837bbSHong Zhang 
1538912837bbSHong Zhang   if (ptap->reuse == MAT_REUSE_MATRIX) {
1539669e9c86SHong Zhang     /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1540669e9c86SHong Zhang     /* 1) get R = Pd^T, Ro = Po^T */
1541669e9c86SHong Zhang     /*----------------------------*/
15429566063dSJacob Faibussowitsch     PetscCall(MatTranspose_SeqAIJ(p->A,MAT_REUSE_MATRIX,&ptap->Rd));
15439566063dSJacob Faibussowitsch     PetscCall(MatTranspose_SeqAIJ(p->B,MAT_REUSE_MATRIX,&ptap->Ro));
1544669e9c86SHong Zhang 
1545669e9c86SHong Zhang     /* 2) compute numeric A_loc */
1546669e9c86SHong Zhang     /*--------------------------*/
15479566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&ptap->A_loc));
1548912837bbSHong Zhang   }
1549912837bbSHong Zhang 
1550669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15514ede91e3SHong Zhang   A_loc = ptap->A_loc;
15529566063dSJacob Faibussowitsch   PetscCall(((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd,A_loc,ptap->C_loc));
15539566063dSJacob Faibussowitsch   PetscCall(((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro,A_loc,ptap->C_oth));
1554912837bbSHong Zhang   C_loc = ptap->C_loc;
1555912837bbSHong Zhang   C_oth = ptap->C_oth;
1556912837bbSHong Zhang 
155769be949aSStefano Zampini   /* add C_loc and C_oth to C */
15589566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C,&rstart,&rend));
1559912837bbSHong Zhang 
1560912837bbSHong Zhang   /* C_loc -> C */
1561912837bbSHong Zhang   cm    = C_loc->rmap->N;
1562912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_loc->data;
1563912837bbSHong Zhang   cols = c_seq->j;
1564912837bbSHong Zhang   vals = c_seq->a;
1565912837bbSHong Zhang   for (i=0; i<cm; i++) {
1566912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1567912837bbSHong Zhang     row = rstart + i;
15689566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES));
1569912837bbSHong Zhang     cols += ncols; vals += ncols;
1570912837bbSHong Zhang   }
1571912837bbSHong Zhang 
1572912837bbSHong Zhang   /* Co -> C, off-processor part */
1573912837bbSHong Zhang   cm    = C_oth->rmap->N;
1574912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_oth->data;
1575912837bbSHong Zhang   cols  = c_seq->j;
1576912837bbSHong Zhang   vals  = c_seq->a;
1577912837bbSHong Zhang   for (i=0; i<cm; i++) {
1578912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1579912837bbSHong Zhang     row = p->garray[i];
15809566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES));
1581912837bbSHong Zhang     cols += ncols; vals += ncols;
1582912837bbSHong Zhang   }
15839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
15849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
15859566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
1586912837bbSHong Zhang 
1587912837bbSHong Zhang   ptap->reuse = MAT_REUSE_MATRIX;
1588912837bbSHong Zhang   PetscFunctionReturn(0);
1589912837bbSHong Zhang }
1590912837bbSHong Zhang 
15916da69ca6SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P,Mat A,Mat C)
1592d6ab1dc0SHong Zhang {
1593d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
15946718818eSStefano Zampini   Mat_MPIAIJ          *p =(Mat_MPIAIJ*)P->data;
1595d6ab1dc0SHong Zhang   Mat_SeqAIJ          *pd=(Mat_SeqAIJ*)(p->A)->data,*po=(Mat_SeqAIJ*)(p->B)->data;
15963cdca5ebSHong Zhang   Mat_APMPI           *ptap;
1597e745005bSHong Zhang   PetscInt            *adj;
1598e745005bSHong Zhang   PetscInt            i,j,k,anz,pnz,row,*cj,nexta;
1599e745005bSHong Zhang   MatScalar           *ada,*ca,valtmp;
1600d6ab1dc0SHong Zhang   PetscInt            am=A->rmap->n,cm=C->rmap->n,pon=(p->B)->cmap->n;
1601ce94432eSBarry Smith   MPI_Comm            comm;
1602d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,taga,*len_s;
1603d6ab1dc0SHong Zhang   PetscInt            *owners,proc,nrows,**buf_ri_k,**nextrow,**nextci;
1604d6ab1dc0SHong Zhang   PetscInt            **buf_ri,**buf_rj;
1605d6ab1dc0SHong Zhang   PetscInt            cnz=0,*bj_i,*bi,*bj,bnz,nextcj;  /* bi,bj,ba: local array of C(mpi mat) */
1606d6ab1dc0SHong Zhang   MPI_Request         *s_waits,*r_waits;
1607d6ab1dc0SHong Zhang   MPI_Status          *status;
1608d6ab1dc0SHong Zhang   MatScalar           **abuf_r,*ba_i,*pA,*coa,*ba;
1609ce496241SStefano Zampini   const PetscScalar   *dummy;
16104e201bd7SHong Zhang   PetscInt            *ai,*aj,*coi,*coj,*poJ,*pdJ;
1611d6ab1dc0SHong Zhang   Mat                 A_loc;
1612d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1613d6ab1dc0SHong Zhang 
1614d6ab1dc0SHong Zhang   PetscFunctionBegin;
16156718818eSStefano Zampini   MatCheckProduct(C,3);
16166718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
161728b400f6SJacob Faibussowitsch   PetscCheck(ptap,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
161828b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
16199566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
16209566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
16219566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1622d6ab1dc0SHong Zhang 
1623d6ab1dc0SHong Zhang   merge = ptap->merge;
1624d6ab1dc0SHong Zhang 
1625e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1626e745005bSHong Zhang   /*------------------------------------------*/
1627d6ab1dc0SHong Zhang   /* get data from symbolic products */
1628d6ab1dc0SHong Zhang   coi    = merge->coi; coj = merge->coj;
16299566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(coi[pon]+1,&coa));
1630d6ab1dc0SHong Zhang   bi     = merge->bi; bj = merge->bj;
1631d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
16329566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bi[cm]+1,&ba));
1633d6ab1dc0SHong Zhang 
1634d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
1635d6ab1dc0SHong Zhang   A_loc = ptap->A_loc;
16369566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&A_loc));
1637d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ*)(A_loc)->data;
1638d6ab1dc0SHong Zhang   ai    = a_loc->i;
1639d6ab1dc0SHong Zhang   aj    = a_loc->j;
1640d6ab1dc0SHong Zhang 
1641ce496241SStefano Zampini   /* trigger copy to CPU */
16429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A,&dummy));
16439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A,&dummy));
16449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B,&dummy));
16459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B,&dummy));
1646d6ab1dc0SHong Zhang   for (i=0; i<am; i++) {
1647d6ab1dc0SHong Zhang     anz = ai[i+1] - ai[i];
1648d6ab1dc0SHong Zhang     adj = aj + ai[i];
1649d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1650d6ab1dc0SHong Zhang 
1651d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1652e745005bSHong Zhang     /*-------------------------------------------------------------*/
1653d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1654d6ab1dc0SHong Zhang     pnz = po->i[i+1] - po->i[i];
1655d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1656d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1657d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1658d6ab1dc0SHong Zhang       row = poJ[j];
1659d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1660d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1661e745005bSHong Zhang       /* perform sparse axpy */
1662e745005bSHong Zhang       nexta  = 0;
1663d6ab1dc0SHong Zhang       valtmp = pA[j];
1664e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1665e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1666e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1667e745005bSHong Zhang           nexta++;
1668d6ab1dc0SHong Zhang         }
1669e745005bSHong Zhang       }
16709566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*anz));
1671d6ab1dc0SHong Zhang     }
1672d6ab1dc0SHong Zhang 
1673d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1674d6ab1dc0SHong Zhang     pnz = pd->i[i+1] - pd->i[i];
1675d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1676d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1677d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1678d6ab1dc0SHong Zhang       row = pdJ[j];
1679d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1680d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1681e745005bSHong Zhang       /* perform sparse axpy */
1682e745005bSHong Zhang       nexta  = 0;
1683d6ab1dc0SHong Zhang       valtmp = pA[j];
1684e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1685e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1686e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1687e745005bSHong Zhang           nexta++;
1688d6ab1dc0SHong Zhang         }
1689e745005bSHong Zhang       }
16909566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0*anz));
1691d6ab1dc0SHong Zhang     }
1692d6ab1dc0SHong Zhang   }
1693d6ab1dc0SHong Zhang 
1694d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1695d6ab1dc0SHong Zhang   /*------------------------------------*/
1696d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1697d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1698d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16999566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&taga));
17009566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm,taga,merge->nrecv,merge->id_r,merge->len_r,&abuf_r,&r_waits));
1701d6ab1dc0SHong Zhang 
17029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend+1,&s_waits,size,&status));
1703d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1704d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1705d6ab1dc0SHong Zhang     i    = merge->owners_co[proc];
17069566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coa+coi[i],len_s[proc],MPIU_MATSCALAR,proc,taga,comm,s_waits+k));
1707d6ab1dc0SHong Zhang     k++;
1708d6ab1dc0SHong Zhang   }
17099566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv,r_waits,status));
17109566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,s_waits,status));
1711d6ab1dc0SHong Zhang 
17129566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits,status));
17139566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
17149566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1715d6ab1dc0SHong Zhang 
1716d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
1717d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
17189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci));
1719d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
1720e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1721d6ab1dc0SHong Zhang     nrows       = *(buf_ri_k[k]);
1722d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k]+1;  /* next row number of k-th recved i-structure */
1723a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1724d6ab1dc0SHong Zhang   }
1725d6ab1dc0SHong Zhang 
1726d6ab1dc0SHong Zhang   for (i=0; i<cm; i++) {
1727d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1728d6ab1dc0SHong Zhang     bj_i = bj + bi[i];  /* col indices of the i-th row of C */
1729d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1730d6ab1dc0SHong Zhang     bnz  = bi[i+1] - bi[i];
1731d6ab1dc0SHong Zhang     /* add received vals into ba */
1732d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
1733d6ab1dc0SHong Zhang       /* i-th row */
1734d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1735d6ab1dc0SHong Zhang         cnz    = *(nextci[k]+1) - *nextci[k];
1736d6ab1dc0SHong Zhang         cj     = buf_rj[k] + *(nextci[k]);
1737d6ab1dc0SHong Zhang         ca     = abuf_r[k] + *(nextci[k]);
1738d6ab1dc0SHong Zhang         nextcj = 0;
1739d6ab1dc0SHong Zhang         for (j=0; nextcj<cnz; j++) {
1740d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1741d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1742d6ab1dc0SHong Zhang           }
1743d6ab1dc0SHong Zhang         }
1744d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
17459566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0*cnz));
1746d6ab1dc0SHong Zhang       }
1747d6ab1dc0SHong Zhang     }
17489566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,bnz,bj_i,ba_i,INSERT_VALUES));
1749d6ab1dc0SHong Zhang   }
17509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
17519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
1752d6ab1dc0SHong Zhang 
17539566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17549566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17559566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17569566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
1757d6ab1dc0SHong Zhang   PetscFunctionReturn(0);
1758d6ab1dc0SHong Zhang }
1759d6ab1dc0SHong Zhang 
17604222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P,Mat A,PetscReal fill,Mat C)
1761d6ab1dc0SHong Zhang {
1762b419842dSStefano Zampini   Mat                 A_loc;
17633cdca5ebSHong Zhang   Mat_APMPI           *ptap;
17640298fd71SBarry Smith   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
17656718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data,*a=(Mat_MPIAIJ*)A->data;
1766d6ab1dc0SHong Zhang   PetscInt            *pdti,*pdtj,*poti,*potj,*ptJ;
1767d6ab1dc0SHong Zhang   PetscInt            nnz;
1768d6ab1dc0SHong Zhang   PetscInt            *lnk,*owners_co,*coi,*coj,i,k,pnz,row;
1769d6ab1dc0SHong Zhang   PetscInt            am  =A->rmap->n,pn=P->cmap->n;
1770ce94432eSBarry Smith   MPI_Comm            comm;
1771d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,tagi,tagj,*len_si,*len_s,*len_ri;
1772d6ab1dc0SHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k;
1773d6ab1dc0SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners;
1774d6ab1dc0SHong Zhang   PetscInt            nzi,*bi,*bj;
1775d6ab1dc0SHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1776d6ab1dc0SHong Zhang   MPI_Request         *swaits,*rwaits;
1777d6ab1dc0SHong Zhang   MPI_Status          *sstatus,rstatus;
1778d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1779d6ab1dc0SHong Zhang   PetscInt            *ai,*aj,*Jptr,anz,*prmap=p->garray,pon,nspacedouble=0,j;
1780d6ab1dc0SHong Zhang   PetscReal           afill  =1.0,afill_tmp;
17814b38b95cSHong Zhang   PetscInt            rstart = P->cmap->rstart,rmax,aN=A->cmap->N,Armax;
1782b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
17830acc65b4SHong Zhang   PetscTable          ta;
1784b92f168fSBarry Smith   MatType             mtype;
1785d6ab1dc0SHong Zhang 
1786d6ab1dc0SHong Zhang   PetscFunctionBegin;
17879566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
1788d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
1789*aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend,comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
1790d6ab1dc0SHong Zhang 
17919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
17929566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
1793d6ab1dc0SHong Zhang 
17943cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
17959566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1796d6ab1dc0SHong Zhang 
1797d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&A_loc));
17992205254eSKarl Rupp 
1800d6ab1dc0SHong Zhang   ptap->A_loc = A_loc;
1801d6ab1dc0SHong Zhang   a_loc       = (Mat_SeqAIJ*)(A_loc)->data;
1802d6ab1dc0SHong Zhang   ai          = a_loc->i;
1803d6ab1dc0SHong Zhang   aj          = a_loc->j;
1804d6ab1dc0SHong Zhang 
1805d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
1806d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
18079566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj));
18089566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B,&poti,&potj));
1809d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1810d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
18119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon+1,&coi));
1812d6ab1dc0SHong Zhang   coi[0] = 0;
1813d6ab1dc0SHong Zhang 
1814d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1815f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(poti[pon],ai[am]));
18169566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz,&free_space));
1817d6ab1dc0SHong Zhang   current_space = free_space;
181819f0e57aSHong Zhang 
1819d6ab1dc0SHong Zhang   /* create and initialize a linked list */
18209566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(A->cmap->n + a->B->cmap->N,aN,&ta));
18214b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,am,ta);
18229566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Armax));
182333ba5e2fSHong Zhang 
18249566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax,&lnk));
1825d6ab1dc0SHong Zhang 
1826d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1827d6ab1dc0SHong Zhang     pnz = poti[i+1] - poti[i];
1828d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1829d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1830d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1831d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
1832d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1833d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18349566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk));
1835d6ab1dc0SHong Zhang     }
1836d6ab1dc0SHong Zhang     nnz = lnk[0];
1837d6ab1dc0SHong Zhang 
1838d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1839d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
18409566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space));
1841d6ab1dc0SHong Zhang       nspacedouble++;
1842d6ab1dc0SHong Zhang     }
1843d6ab1dc0SHong Zhang 
1844d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18459566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk));
18462205254eSKarl Rupp 
1847d6ab1dc0SHong Zhang     current_space->array           += nnz;
1848d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
1849d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18502205254eSKarl Rupp 
1851d6ab1dc0SHong Zhang     coi[i+1] = coi[i] + nnz;
1852d6ab1dc0SHong Zhang   }
1853d6ab1dc0SHong Zhang 
18549566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(coi[pon]+1,&coj));
18559566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,coj));
18569566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18572205254eSKarl Rupp 
1858118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon]/(poti[pon] + ai[am]+1);
1859d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1860d6ab1dc0SHong Zhang 
1861d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1862d6ab1dc0SHong Zhang   /*----------------------------------------------*/
1863d6ab1dc0SHong Zhang   /* determine row ownership */
18649566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18659566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm,&merge->rowmap));
18662205254eSKarl Rupp 
1867d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1868d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18692205254eSKarl Rupp 
18709566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1871d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1872d6ab1dc0SHong Zhang 
1873d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18749566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size,&len_si));
18759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size,&merge->len_s));
18762205254eSKarl Rupp 
1877d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1878d6ab1dc0SHong Zhang   merge->nsend = 0;
1879d6ab1dc0SHong Zhang 
18809566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size+2,&owners_co));
1881d6ab1dc0SHong Zhang 
1882d6ab1dc0SHong Zhang   proc = 0;
1883d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1884d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
1885d6ab1dc0SHong Zhang     len_si[proc]++;  /* num of rows in Co to be sent to [proc] */
1886d6ab1dc0SHong Zhang     len_s[proc] += coi[i+1] - coi[i];
1887d6ab1dc0SHong Zhang   }
1888d6ab1dc0SHong Zhang 
1889d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1890d6ab1dc0SHong Zhang   owners_co[0] = 0;
1891d6ab1dc0SHong Zhang   for (proc=0; proc<size; proc++) {
1892d6ab1dc0SHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1893d6ab1dc0SHong Zhang     if (len_si[proc]) {
1894d6ab1dc0SHong Zhang       merge->nsend++;
1895d6ab1dc0SHong Zhang       len_si[proc] = 2*(len_si[proc] + 1);
1896d6ab1dc0SHong Zhang       len         += len_si[proc];
1897d6ab1dc0SHong Zhang     }
1898d6ab1dc0SHong Zhang   }
1899d6ab1dc0SHong Zhang 
1900d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
19019566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm,NULL,len_s,&merge->nrecv));
19029566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm,merge->nsend,merge->nrecv,len_s,len_si,&merge->id_r,&merge->len_r,&len_ri));
1903d6ab1dc0SHong Zhang 
1904d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
19059566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagj));
19069566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagj,merge->nrecv,merge->id_r,merge->len_r,&buf_rj,&rwaits));
19079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend+1,&swaits));
1908d6ab1dc0SHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1909d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1910d6ab1dc0SHong Zhang     i    = owners_co[proc];
19119566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k));
1912d6ab1dc0SHong Zhang     k++;
1913d6ab1dc0SHong Zhang   }
1914d6ab1dc0SHong Zhang 
1915d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
19169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size,&sstatus));
1917d6ab1dc0SHong Zhang   for (i=0; i<merge->nrecv; i++) {
1918ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19199566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus));
1920d6ab1dc0SHong Zhang   }
19219566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19229566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,swaits,sstatus));
1923d6ab1dc0SHong Zhang 
19240acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1925c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19260acc65b4SHong Zhang   for (k=0; k<merge->nrecv; k++) {/* k-th received message */
19270acc65b4SHong Zhang     Jptr = buf_rj[k];
19280acc65b4SHong Zhang     for (j=0; j<merge->len_r[k]; j++) {
19299566063dSJacob Faibussowitsch       PetscCall(PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES));
19300acc65b4SHong Zhang     }
19310acc65b4SHong Zhang   }
19329566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Armax));
19330acc65b4SHong Zhang 
1934d6ab1dc0SHong Zhang   /* send and recv coi */
1935d6ab1dc0SHong Zhang   /*-------------------*/
19369566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm,&tagi));
19379566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm,tagi,merge->nrecv,merge->id_r,len_ri,&buf_ri,&rwaits));
19389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len+1,&buf_s));
1939d6ab1dc0SHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1940d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1941d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1942d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1943d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1944d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1945d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1946d6ab1dc0SHong Zhang     */
1947d6ab1dc0SHong Zhang     /*-------------------------------------------*/
1948d6ab1dc0SHong Zhang     nrows       = len_si[proc]/2 - 1;
1949d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows+1;
1950d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1951d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1952d6ab1dc0SHong Zhang     nrows       = 0;
1953d6ab1dc0SHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1954d6ab1dc0SHong Zhang       nzi               = coi[i+1] - coi[i];
1955d6ab1dc0SHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1956d6ab1dc0SHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1957d6ab1dc0SHong Zhang       nrows++;
1958d6ab1dc0SHong Zhang     }
19599566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k));
1960d6ab1dc0SHong Zhang     k++;
1961d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1962d6ab1dc0SHong Zhang   }
1963d6ab1dc0SHong Zhang   i = merge->nrecv;
1964d6ab1dc0SHong Zhang   while (i--) {
1965ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19669566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus));
1967d6ab1dc0SHong Zhang   }
19689566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19699566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend,swaits,sstatus));
19709566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19719566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19729566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19739566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19749566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1975d6ab1dc0SHong Zhang 
1976d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1977d6ab1dc0SHong Zhang   /*------------------------------------------*/
1978d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn+1,&bi));
1980d6ab1dc0SHong Zhang   bi[0] = 0;
1981d6ab1dc0SHong Zhang 
1982d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1983f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(pdti[pn],PetscIntSumTruncate(poti[pon],ai[am])));
19849566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz,&free_space));
1985d6ab1dc0SHong Zhang   current_space = free_space;
1986d6ab1dc0SHong Zhang 
19879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci));
1988d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
1989d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1990d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1991d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
19922d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1993d6ab1dc0SHong Zhang   }
1994d6ab1dc0SHong Zhang 
19959566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax,&lnk));
1996d0609cedSBarry Smith   MatPreallocateBegin(comm,pn,A->cmap->n,dnz,onz);
1997d6ab1dc0SHong Zhang   rmax = 0;
1998d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
1999d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
2000d6ab1dc0SHong Zhang     pnz = pdti[i+1] - pdti[i];
2001d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
2002d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
2003d6ab1dc0SHong Zhang       row  = ptJ[j];  /* row of AP == col of Pt */
2004d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
2005d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
2006d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
20079566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk));
2008d6ab1dc0SHong Zhang     }
2009d6ab1dc0SHong Zhang 
2010d6ab1dc0SHong Zhang     /* add received col data into lnk */
2011d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
2012d6ab1dc0SHong Zhang       if (i == *nextrow[k]) { /* i-th row */
2013d6ab1dc0SHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
2014d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
20159566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi,Jptr,lnk));
2016d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
2017d6ab1dc0SHong Zhang       }
2018d6ab1dc0SHong Zhang     }
20198c78258cSHong Zhang 
20208c78258cSHong Zhang     /* add missing diagonal entry */
20218c78258cSHong Zhang     if (C->force_diagonals) {
20228c78258cSHong Zhang       k = i + owners[rank]; /* column index */
20239566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1,&k,lnk));
20248c78258cSHong Zhang     }
20258c78258cSHong Zhang 
2026d6ab1dc0SHong Zhang     nnz = lnk[0];
2027d6ab1dc0SHong Zhang 
2028d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
2029d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
20309566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space));
2031d6ab1dc0SHong Zhang       nspacedouble++;
2032d6ab1dc0SHong Zhang     }
2033d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
20349566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk));
20359566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i+owners[rank],nnz,current_space->array,dnz,onz));
20362205254eSKarl Rupp 
2037d6ab1dc0SHong Zhang     current_space->array           += nnz;
2038d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
2039d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20402205254eSKarl Rupp 
2041d6ab1dc0SHong Zhang     bi[i+1] = bi[i] + nnz;
2042d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2043d6ab1dc0SHong Zhang   }
20449566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k,nextrow,nextci));
2045d6ab1dc0SHong Zhang 
20469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[pn]+1,&bj));
20479566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,bj));
2048118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn]/(pdti[pn] + poti[pon] + ai[am]+1);
2049d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20509566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
20519566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
20529566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A,&pdti,&pdtj));
20539566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B,&poti,&potj));
2054d6ab1dc0SHong Zhang 
20554222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20564222ddf1SHong Zhang   /*-------------------------------------------------------------------------------*/
20579566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C,pn,A->cmap->n,PETSC_DETERMINE,PETSC_DETERMINE));
20589566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(C,PetscAbs(P->cmap->bs),PetscAbs(A->cmap->bs)));
20599566063dSJacob Faibussowitsch   PetscCall(MatGetType(A,&mtype));
20609566063dSJacob Faibussowitsch   PetscCall(MatSetType(C,mtype));
20619566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C,0,dnz,0,onz));
2062d0609cedSBarry Smith   MatPreallocateEnd(dnz,onz);
20639566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C,1));
20649566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
2065d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2066d6ab1dc0SHong Zhang     row  = i + rstart;
2067d6ab1dc0SHong Zhang     nnz  = bi[i+1] - bi[i];
2068d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20699566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C,1,&row,nnz,Jptr,NULL,INSERT_VALUES));
2070d6ab1dc0SHong Zhang   }
20719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
20729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
20739566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
2074d6ab1dc0SHong Zhang   merge->bi        = bi;
2075d6ab1dc0SHong Zhang   merge->bj        = bj;
2076d6ab1dc0SHong Zhang   merge->coi       = coi;
2077d6ab1dc0SHong Zhang   merge->coj       = coj;
2078d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2079d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2080d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2081d6ab1dc0SHong Zhang 
20824222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20836718818eSStefano Zampini   C->product->data    = ptap;
20846718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
2085d6ab1dc0SHong Zhang   ptap->merge         = merge;
2086a560ef98SHong Zhang 
20874222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2088f96d37fcSHong Zhang 
2089f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2090f96d37fcSHong Zhang   if (bi[pn] != 0) {
20919566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill));
20929566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n",(double)afill));
2093f96d37fcSHong Zhang   } else {
20949566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
2095f96d37fcSHong Zhang   }
2096f96d37fcSHong Zhang #endif
2097f96d37fcSHong Zhang   PetscFunctionReturn(0);
2098f96d37fcSHong Zhang }
20994222ddf1SHong Zhang 
21004222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21014222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
21024222ddf1SHong Zhang {
21034222ddf1SHong Zhang   Mat_Product    *product = C->product;
21044222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21054222ddf1SHong Zhang   PetscReal      fill=product->fill;
21064222ddf1SHong Zhang   PetscBool      flg;
21074222ddf1SHong Zhang 
21084222ddf1SHong Zhang   PetscFunctionBegin;
21094222ddf1SHong Zhang   /* scalable */
21109566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"scalable",&flg));
21114222ddf1SHong Zhang   if (flg) {
21129566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C));
21134222ddf1SHong Zhang     goto next;
21144222ddf1SHong Zhang   }
21154222ddf1SHong Zhang 
21164222ddf1SHong Zhang   /* nonscalable */
21179566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"nonscalable",&flg));
21184222ddf1SHong Zhang   if (flg) {
21199566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C));
21204222ddf1SHong Zhang     goto next;
21214222ddf1SHong Zhang   }
21224222ddf1SHong Zhang 
21234222ddf1SHong Zhang   /* matmatmult */
21249566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"at*b",&flg));
21254222ddf1SHong Zhang   if (flg) {
21264222ddf1SHong Zhang     Mat       At;
21274222ddf1SHong Zhang     Mat_APMPI *ptap;
21284222ddf1SHong Zhang 
21299566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A,MAT_INITIAL_MATRIX,&At));
21309566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At,B,fill,C));
21316718818eSStefano Zampini     ptap = (Mat_APMPI*)C->product->data;
21324222ddf1SHong Zhang     if (ptap) {
21334222ddf1SHong Zhang       ptap->Pt = At;
21346718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
21354222ddf1SHong Zhang     }
21364222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21374222ddf1SHong Zhang     goto next;
21384222ddf1SHong Zhang   }
21394222ddf1SHong Zhang 
21404e84afc0SStefano Zampini   /* backend general code */
21419566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"backend",&flg));
21424e84afc0SStefano Zampini   if (flg) {
21439566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21444e84afc0SStefano Zampini     PetscFunctionReturn(0);
21454e84afc0SStefano Zampini   }
21464e84afc0SStefano Zampini 
21474222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatProduct type is not supported");
21484222ddf1SHong Zhang 
21494222ddf1SHong Zhang next:
21504222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21514222ddf1SHong Zhang   PetscFunctionReturn(0);
21524222ddf1SHong Zhang }
21534222ddf1SHong Zhang 
21544222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21554222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
21564222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
21574222ddf1SHong Zhang {
21584222ddf1SHong Zhang   Mat_Product    *product = C->product;
21594222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21604222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21614e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","seqmpi","backend","hypre"};
21624e84afc0SStefano Zampini   PetscInt       nalg = 5;
21634222ddf1SHong Zhang #else
21644e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","seqmpi","backend",};
21654e84afc0SStefano Zampini   PetscInt       nalg = 4;
21664222ddf1SHong Zhang #endif
21674222ddf1SHong Zhang   PetscInt       alg = 1; /* set nonscalable algorithm as default */
21684222ddf1SHong Zhang   PetscBool      flg;
21694222ddf1SHong Zhang   MPI_Comm       comm;
21704222ddf1SHong Zhang 
21714222ddf1SHong Zhang   PetscFunctionBegin;
21724222ddf1SHong Zhang   /* Check matrix local sizes */
21739566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
2174*aed4548fSBarry Smith   PetscCheck(A->cmap->rstart == B->rmap->rstart && A->cmap->rend == B->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
21754222ddf1SHong Zhang 
21764222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21779566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
21784222ddf1SHong Zhang   if (flg) {
21799566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21804222ddf1SHong Zhang 
21814222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21824222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21834222ddf1SHong Zhang       MatInfo     Ainfo,Binfo;
21844222ddf1SHong Zhang       PetscInt    nz_local;
21854222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
21864222ddf1SHong Zhang 
21879566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
21889566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B,MAT_LOCAL,&Binfo));
21894222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21904222ddf1SHong Zhang 
21914222ddf1SHong Zhang       if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
21921c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
21934222ddf1SHong Zhang 
21944222ddf1SHong Zhang       if (alg_scalable) {
21954222ddf1SHong Zhang         alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
21969566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21979566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B,"Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n",B->cmap->N,(double)(product->fill*nz_local)));
21984222ddf1SHong Zhang       }
21994222ddf1SHong Zhang     }
22004222ddf1SHong Zhang   }
22014222ddf1SHong Zhang 
22024222ddf1SHong Zhang   /* Get runtime option */
22034222ddf1SHong Zhang   if (product->api_user) {
2204d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMult","Mat");
22059566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2206d0609cedSBarry Smith     PetscOptionsEnd();
22074222ddf1SHong Zhang   } else {
2208d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AB","Mat");
22099566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2210d0609cedSBarry Smith     PetscOptionsEnd();
22114222ddf1SHong Zhang   }
22124222ddf1SHong Zhang   if (flg) {
22139566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22144222ddf1SHong Zhang   }
22154222ddf1SHong Zhang 
22164222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
22174222ddf1SHong Zhang   PetscFunctionReturn(0);
22184222ddf1SHong Zhang }
22194222ddf1SHong Zhang 
22204222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
22214222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
22224222ddf1SHong Zhang {
22234222ddf1SHong Zhang   Mat_Product    *product = C->product;
22244222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
22254e84afc0SStefano Zampini   const char     *algTypes[4] = {"scalable","nonscalable","at*b","backend"};
22264e84afc0SStefano Zampini   PetscInt       nalg = 4;
22274222ddf1SHong Zhang   PetscInt       alg = 1; /* set default algorithm  */
22284222ddf1SHong Zhang   PetscBool      flg;
22294222ddf1SHong Zhang   MPI_Comm       comm;
22304222ddf1SHong Zhang 
22314222ddf1SHong Zhang   PetscFunctionBegin;
22324222ddf1SHong Zhang   /* Check matrix local sizes */
22339566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
2234*aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
22354222ddf1SHong Zhang 
22364222ddf1SHong Zhang   /* Set default algorithm */
22379566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
22384222ddf1SHong Zhang   if (flg) {
22399566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22404222ddf1SHong Zhang   }
22414222ddf1SHong Zhang 
22424222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22434222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22444222ddf1SHong Zhang     MatInfo     Ainfo,Binfo;
22454222ddf1SHong Zhang     PetscInt    nz_local;
22464222ddf1SHong Zhang     PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
22474222ddf1SHong Zhang 
22489566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
22499566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B,MAT_LOCAL,&Binfo));
22504222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22514222ddf1SHong Zhang 
22524222ddf1SHong Zhang     if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22531c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
22544222ddf1SHong Zhang 
22554222ddf1SHong Zhang     if (alg_scalable) {
22564222ddf1SHong Zhang       alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22579566063dSJacob Faibussowitsch       PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22589566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B,"Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n",B->cmap->N,(double)(product->fill*nz_local)));
22594222ddf1SHong Zhang     }
22604222ddf1SHong Zhang   }
22614222ddf1SHong Zhang 
22624222ddf1SHong Zhang   /* Get runtime option */
22634222ddf1SHong Zhang   if (product->api_user) {
2264d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatTransposeMatMult","Mat");
22659566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2266d0609cedSBarry Smith     PetscOptionsEnd();
22674222ddf1SHong Zhang   } else {
2268d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AtB","Mat");
22699566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2270d0609cedSBarry Smith     PetscOptionsEnd();
22714222ddf1SHong Zhang   }
22724222ddf1SHong Zhang   if (flg) {
22739566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
22744222ddf1SHong Zhang   }
22754222ddf1SHong Zhang 
22764222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22774222ddf1SHong Zhang   PetscFunctionReturn(0);
22784222ddf1SHong Zhang }
22794222ddf1SHong Zhang 
22804222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
22814222ddf1SHong Zhang {
22824222ddf1SHong Zhang   Mat_Product    *product = C->product;
22834222ddf1SHong Zhang   Mat            A=product->A,P=product->B;
22844222ddf1SHong Zhang   MPI_Comm       comm;
22854222ddf1SHong Zhang   PetscBool      flg;
22864222ddf1SHong Zhang   PetscInt       alg=1; /* set default algorithm */
22874222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22884e84afc0SStefano Zampini   const char     *algTypes[5] = {"scalable","nonscalable","allatonce","allatonce_merged","backend"};
22894222ddf1SHong Zhang   PetscInt       nalg=5;
22904e84afc0SStefano Zampini #else
22914e84afc0SStefano Zampini   const char     *algTypes[6] = {"scalable","nonscalable","allatonce","allatonce_merged","backend","hypre"};
22924e84afc0SStefano Zampini   PetscInt       nalg=6;
22934222ddf1SHong Zhang #endif
22944222ddf1SHong Zhang   PetscInt       pN=P->cmap->N;
22954222ddf1SHong Zhang 
22964222ddf1SHong Zhang   PetscFunctionBegin;
22974222ddf1SHong Zhang   /* Check matrix local sizes */
22989566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C,&comm));
2299*aed4548fSBarry Smith   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
2300*aed4548fSBarry Smith   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend);
23014222ddf1SHong Zhang 
23024222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
23039566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
23044222ddf1SHong Zhang   if (flg) {
23059566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23064222ddf1SHong Zhang 
23074222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
23084222ddf1SHong Zhang     if (pN > 100000) {
23094222ddf1SHong Zhang       MatInfo     Ainfo,Pinfo;
23104222ddf1SHong Zhang       PetscInt    nz_local;
23114222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
23124222ddf1SHong Zhang 
23139566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A,MAT_LOCAL,&Ainfo));
23149566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P,MAT_LOCAL,&Pinfo));
23154222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
23164222ddf1SHong Zhang 
23174222ddf1SHong Zhang       if (pN > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
23181c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm));
23194222ddf1SHong Zhang 
23204222ddf1SHong Zhang       if (alg_scalable) {
23214222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
23229566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23234222ddf1SHong Zhang       }
23244222ddf1SHong Zhang     }
23254222ddf1SHong Zhang   }
23264222ddf1SHong Zhang 
23274222ddf1SHong Zhang   /* Get runtime option */
23284222ddf1SHong Zhang   if (product->api_user) {
2329d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatPtAP","Mat");
23309566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg));
2331d0609cedSBarry Smith     PetscOptionsEnd();
23324222ddf1SHong Zhang   } else {
2333d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_PtAP","Mat");
23349566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg));
2335d0609cedSBarry Smith     PetscOptionsEnd();
23364222ddf1SHong Zhang   }
23374222ddf1SHong Zhang   if (flg) {
23389566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23394222ddf1SHong Zhang   }
23404222ddf1SHong Zhang 
23414222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23424222ddf1SHong Zhang   PetscFunctionReturn(0);
23434222ddf1SHong Zhang }
23444222ddf1SHong Zhang 
23454222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
23464222ddf1SHong Zhang {
23474222ddf1SHong Zhang   Mat_Product *product = C->product;
23484222ddf1SHong Zhang   Mat         A = product->A,R=product->B;
23494222ddf1SHong Zhang 
23504222ddf1SHong Zhang   PetscFunctionBegin;
23514222ddf1SHong Zhang   /* Check matrix local sizes */
2352*aed4548fSBarry Smith   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")",A->rmap->n,A->rmap->n,R->rmap->n,R->cmap->n);
23534222ddf1SHong Zhang 
23544222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23554222ddf1SHong Zhang   PetscFunctionReturn(0);
23564222ddf1SHong Zhang }
23574222ddf1SHong Zhang 
23584222ddf1SHong Zhang /*
23594222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23604222ddf1SHong Zhang */
23614222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
23624222ddf1SHong Zhang {
23634222ddf1SHong Zhang   Mat_Product    *product = C->product;
23644222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
23654222ddf1SHong Zhang   PetscInt       alg = 1; /* default algorithm */
23664222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","nonscalable","seqmpi"};
23674222ddf1SHong Zhang   PetscInt       nalg = 3;
23684222ddf1SHong Zhang 
23694222ddf1SHong Zhang   PetscFunctionBegin;
23704222ddf1SHong Zhang   /* Set default algorithm */
23719566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
23724222ddf1SHong Zhang   if (flg) {
23739566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23744222ddf1SHong Zhang   }
23754222ddf1SHong Zhang 
23764222ddf1SHong Zhang   /* Get runtime option */
23774222ddf1SHong Zhang   if (product->api_user) {
2378d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMatMult","Mat");
23799566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via","Algorithmic approach","MatMatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2380d0609cedSBarry Smith     PetscOptionsEnd();
23814222ddf1SHong Zhang   } else {
2382d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABC","Mat");
23839566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABC",algTypes,nalg,algTypes[alg],&alg,&flg));
2384d0609cedSBarry Smith     PetscOptionsEnd();
23854222ddf1SHong Zhang   }
23864222ddf1SHong Zhang   if (flg) {
23879566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
23884222ddf1SHong Zhang   }
23894222ddf1SHong Zhang 
23904222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23914222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23924222ddf1SHong Zhang   PetscFunctionReturn(0);
23934222ddf1SHong Zhang }
23944222ddf1SHong Zhang 
23954222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
23964222ddf1SHong Zhang {
23974222ddf1SHong Zhang   Mat_Product    *product = C->product;
23984222ddf1SHong Zhang 
23994222ddf1SHong Zhang   PetscFunctionBegin;
24004222ddf1SHong Zhang   switch (product->type) {
24014222ddf1SHong Zhang   case MATPRODUCT_AB:
24029566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
24034222ddf1SHong Zhang     break;
24044222ddf1SHong Zhang   case MATPRODUCT_AtB:
24059566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
24064222ddf1SHong Zhang     break;
24074222ddf1SHong Zhang   case MATPRODUCT_PtAP:
24089566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
24094222ddf1SHong Zhang     break;
24104222ddf1SHong Zhang   case MATPRODUCT_RARt:
24119566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
24124222ddf1SHong Zhang     break;
24134222ddf1SHong Zhang   case MATPRODUCT_ABC:
24149566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
24154222ddf1SHong Zhang     break;
24166718818eSStefano Zampini   default:
24176718818eSStefano Zampini     break;
24184222ddf1SHong Zhang   }
24194222ddf1SHong Zhang   PetscFunctionReturn(0);
24204222ddf1SHong Zhang }
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