xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision cc1eb50d5a4d6061e906552df09a79d2d9d16af2)
12499ec78SHong Zhang /*
22499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
32499ec78SHong Zhang           C = A * B
42499ec78SHong Zhang */
5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
8c6db04a5SJed Brown #include <petscbt.h>
9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
10af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
121634b032SHong Zhang 
135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
155e5acdf2Sstefano_zampini #endif
165e5acdf2Sstefano_zampini 
17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
18d71ae5a4SJacob Faibussowitsch {
198a9c020eSBarry Smith   Mat_Product *product = C->product;
208a9c020eSBarry Smith   Mat          B       = product->B;
218a9c020eSBarry Smith 
228a9c020eSBarry Smith   PetscFunctionBegin;
238a9c020eSBarry Smith   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
248a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
258a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278a9c020eSBarry Smith }
288a9c020eSBarry Smith 
29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
30d71ae5a4SJacob Faibussowitsch {
314222ddf1SHong Zhang   Mat_Product        *product = C->product;
324222ddf1SHong Zhang   Mat                 A = product->A, B = product->B;
334222ddf1SHong Zhang   MatProductAlgorithm alg  = product->alg;
344222ddf1SHong Zhang   PetscReal           fill = product->fill;
355e68f438SHong Zhang   PetscBool           flg;
362499ec78SHong Zhang 
372499ec78SHong Zhang   PetscFunctionBegin;
384222ddf1SHong Zhang   /* scalable */
399566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
404222ddf1SHong Zhang   if (flg) {
419566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
430fc8cf34SHong Zhang   }
447d0a89b7SHong Zhang 
454222ddf1SHong Zhang   /* nonscalable */
469566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
474222ddf1SHong Zhang   if (flg) {
489566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
504222ddf1SHong Zhang   }
514222ddf1SHong Zhang 
524222ddf1SHong Zhang   /* seqmpi */
539566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
544222ddf1SHong Zhang   if (flg) {
559566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
574222ddf1SHong Zhang   }
584222ddf1SHong Zhang 
594e84afc0SStefano Zampini   /* backend general code */
609566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "backend", &flg));
614e84afc0SStefano Zampini   if (flg) {
629566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
644e84afc0SStefano Zampini   }
654e84afc0SStefano Zampini 
664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
684222ddf1SHong Zhang   if (flg) {
699566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
714222ddf1SHong Zhang   }
724222ddf1SHong Zhang #endif
734222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
742499ec78SHong Zhang }
752499ec78SHong Zhang 
76*cc1eb50dSBarry Smith PetscErrorCode MatProductCtxDestroy_MPIAIJ_MatMatMult(void **data)
77d71ae5a4SJacob Faibussowitsch {
78*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap = *(MatProductCtx_APMPI **)data;
79598bc09dSHong Zhang 
80598bc09dSHong Zhang   PetscFunctionBegin;
819566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
829566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
869566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91598bc09dSHong Zhang }
92598bc09dSHong Zhang 
93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C)
94d71ae5a4SJacob Faibussowitsch {
954ae0847bSHong Zhang   Mat_MPIAIJ          *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
96f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
97f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
98c12557a1SHong Zhang   PetscScalar         *cda = cd->a, *coa = co->a;
99598bc09dSHong Zhang   Mat_SeqAIJ          *p_loc, *p_oth;
1009ce11a7cSHong Zhang   PetscScalar         *apa, *ca;
101c12557a1SHong Zhang   PetscInt             cm = C->rmap->n;
102*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
103c12557a1SHong Zhang   PetscInt            *api, *apj, *apJ, i, k;
10429825010SHong Zhang   PetscInt             cstart = C->cmap->rstart;
105598bc09dSHong Zhang   PetscInt             cdnz, conz, k0, k1;
106ce496241SStefano Zampini   const PetscScalar   *dummy;
1079467f45fSHong Zhang   MPI_Comm             comm;
1089467f45fSHong Zhang   PetscMPIInt          size;
109598bc09dSHong Zhang 
110598bc09dSHong Zhang   PetscFunctionBegin;
1116718818eSStefano Zampini   MatCheckProduct(C, 3);
112*cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
11328b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1149566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
116aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11780da8df7SHong Zhang 
11865e4b4d4SStefano Zampini   /* flag CPU mask for C */
11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12065e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12165e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini #endif
12465e4b4d4SStefano Zampini 
125a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
126a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1279566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
129598bc09dSHong Zhang 
130598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
131598bc09dSHong Zhang   /* get data from symbolic products */
132f4f49eeaSPierre Jolivet   p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
133c12557a1SHong Zhang   p_oth = NULL;
134f4f49eeaSPierre Jolivet   if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
135598bc09dSHong Zhang 
136598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
137598bc09dSHong Zhang   apa = ptap->apa;
138598bc09dSHong Zhang 
13929825010SHong Zhang   api = ptap->api;
14029825010SHong Zhang   apj = ptap->apj;
141ce496241SStefano Zampini   /* trigger copy to CPU */
1429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
1439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
1449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
1459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
146598bc09dSHong Zhang   for (i = 0; i < cm; i++) {
147c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
148e497d3c8SHong Zhang     AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
149598bc09dSHong Zhang 
150598bc09dSHong Zhang     /* set values in C */
151216f1e5cSPierre Jolivet     apJ  = PetscSafePointerPlusOffset(apj, api[i]);
152598bc09dSHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
153598bc09dSHong Zhang     conz = co->i[i + 1] - co->i[i];
154598bc09dSHong Zhang 
155910cf402Sprj-     /* 1st off-diagonal part of C */
1568e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
157598bc09dSHong Zhang     k  = 0;
158598bc09dSHong Zhang     for (k0 = 0; k0 < conz; k0++) {
159598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
160598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1615cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
162598bc09dSHong Zhang     }
163598bc09dSHong Zhang 
164598bc09dSHong Zhang     /* diagonal part of C */
1658e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(cda, cd->i[i]);
166598bc09dSHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
167598bc09dSHong Zhang       ca[k1]        = apa[apJ[k]];
1685cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
169598bc09dSHong Zhang     }
170598bc09dSHong Zhang 
171910cf402Sprj-     /* 2nd off-diagonal part of C */
1728e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
173598bc09dSHong Zhang     for (; k0 < conz; k0++) {
174598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1755cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
176598bc09dSHong Zhang     }
177598bc09dSHong Zhang   }
1789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
181598bc09dSHong Zhang }
182598bc09dSHong Zhang 
183d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C)
184d71ae5a4SJacob Faibussowitsch {
185ce94432eSBarry Smith   MPI_Comm             comm;
1869467f45fSHong Zhang   PetscMPIInt          size;
187*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1880298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
1896718818eSStefano Zampini   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
190f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
1917dbaa2c6Sandi selinger   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
1924ae0847bSHong Zhang   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
193d14fa243SHong Zhang   PetscInt            *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
1945cab4f04SHong Zhang   PetscInt             am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
195598bc09dSHong Zhang   PetscBT              lnkbt;
196bfcd1a73SHong Zhang   PetscReal            afill;
197b92f168fSBarry Smith   MatType              mtype;
198598bc09dSHong Zhang 
199598bc09dSHong Zhang   PetscFunctionBegin;
2006718818eSStefano Zampini   MatCheckProduct(C, 4);
20128b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2029566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2049467f45fSHong Zhang 
205*cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
2069566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
207598bc09dSHong Zhang 
208598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2099566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
21019f0e57aSHong Zhang 
211598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2129566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
213598bc09dSHong Zhang 
214f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
2159371c9d4SSatish Balay   pi_loc = p_loc->i;
2169371c9d4SSatish Balay   pj_loc = p_loc->j;
2179467f45fSHong Zhang   if (size > 1) {
218f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
2199371c9d4SSatish Balay     pi_oth = p_oth->i;
2209371c9d4SSatish Balay     pj_oth = p_oth->j;
22120e3dc75SHong Zhang   } else {
22220e3dc75SHong Zhang     p_oth  = NULL;
2239371c9d4SSatish Balay     pi_oth = NULL;
2249371c9d4SSatish Balay     pj_oth = NULL;
2259467f45fSHong Zhang   }
226598bc09dSHong Zhang 
227598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
22884648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
229a1a4e84aSHong Zhang   ptap->api = api;
230598bc09dSHong Zhang   api[0]    = 0;
231598bc09dSHong Zhang 
2325cab4f04SHong Zhang   /* create and initialize a linked list */
2339566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
234598bc09dSHong Zhang 
235bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2369566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
237598bc09dSHong Zhang   current_space = free_space;
238598bc09dSHong Zhang 
239d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
240598bc09dSHong Zhang   for (i = 0; i < am; i++) {
241598bc09dSHong Zhang     /* diagonal portion of A */
242598bc09dSHong Zhang     nzi = adi[i + 1] - adi[i];
243598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
244598bc09dSHong Zhang       row  = *adj++;
245598bc09dSHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
246598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
247598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2489566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
249598bc09dSHong Zhang     }
250598bc09dSHong Zhang     /* off-diagonal portion of A */
251598bc09dSHong Zhang     nzi = aoi[i + 1] - aoi[i];
252598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
253598bc09dSHong Zhang       row  = *aoj++;
254598bc09dSHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
255598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2569566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
257598bc09dSHong Zhang     }
2588c78258cSHong Zhang     /* add possible missing diagonal entry */
2598c78258cSHong Zhang     if (C->force_diagonals) {
2608c78258cSHong Zhang       j = i + rstart; /* column index */
2619566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2628c78258cSHong Zhang     }
263598bc09dSHong Zhang 
264d14fa243SHong Zhang     apnz       = lnk[0];
265598bc09dSHong Zhang     api[i + 1] = api[i] + apnz;
266598bc09dSHong Zhang 
267598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
268598bc09dSHong Zhang     if (current_space->local_remaining < apnz) {
2699566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
270598bc09dSHong Zhang       nspacedouble++;
271598bc09dSHong Zhang     }
272598bc09dSHong Zhang 
273598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2749566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2759566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2762205254eSKarl Rupp 
277598bc09dSHong Zhang     current_space->array += apnz;
278598bc09dSHong Zhang     current_space->local_used += apnz;
279598bc09dSHong Zhang     current_space->local_remaining -= apnz;
280598bc09dSHong Zhang   }
281598bc09dSHong Zhang 
282598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
283598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
28484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
285a1a4e84aSHong Zhang   apj = ptap->apj;
2869566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2879566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
288598bc09dSHong Zhang 
289f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN, &ptap->apa));
291f84c536bSHong Zhang 
2924222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
2949566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
295a2f3521dSMark F. Adams 
2969566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
2979566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
2989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
299d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
30017f75172Sandi selinger 
3019566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
3029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
305598bc09dSHong Zhang 
3064222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3074222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
308598bc09dSHong Zhang 
3094222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3106718818eSStefano Zampini   C->product->data    = ptap;
311*cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
312598bc09dSHong Zhang 
313bfcd1a73SHong Zhang   /* set MatInfo */
314118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
315bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3164222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3174222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3184222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
319bfcd1a73SHong Zhang 
320bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
321bfcd1a73SHong Zhang   if (api[am]) {
3229566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3239566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
324bfcd1a73SHong Zhang   } else {
3259566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
326bfcd1a73SHong Zhang   }
327bfcd1a73SHong Zhang #endif
3283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
329598bc09dSHong Zhang }
330598bc09dSHong Zhang 
3316718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3326718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3336718818eSStefano Zampini 
334d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
335d71ae5a4SJacob Faibussowitsch {
3364222ddf1SHong Zhang   Mat_Product *product = C->product;
3374222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3389123193aSHong Zhang 
3399123193aSHong Zhang   PetscFunctionBegin;
3404222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
34198921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3424222ddf1SHong Zhang 
3434222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3444222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3469123193aSHong Zhang }
3472ef1f0ffSBarry Smith 
348d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
349d71ae5a4SJacob Faibussowitsch {
3504222ddf1SHong Zhang   Mat_Product *product = C->product;
3514222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3524222ddf1SHong Zhang 
3534222ddf1SHong Zhang   PetscFunctionBegin;
3544222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
35598921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3564222ddf1SHong Zhang 
3574222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3584222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3604222ddf1SHong Zhang }
3614222ddf1SHong Zhang 
362d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
363d71ae5a4SJacob Faibussowitsch {
3644222ddf1SHong Zhang   Mat_Product *product = C->product;
3654222ddf1SHong Zhang 
3664222ddf1SHong Zhang   PetscFunctionBegin;
3674222ddf1SHong Zhang   switch (product->type) {
368d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
369d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
370d71ae5a4SJacob Faibussowitsch     break;
371d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
372d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
373d71ae5a4SJacob Faibussowitsch     break;
374d71ae5a4SJacob Faibussowitsch   default:
375d71ae5a4SJacob Faibussowitsch     break;
3764222ddf1SHong Zhang   }
3773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3784222ddf1SHong Zhang }
3799123193aSHong Zhang 
3804324174eSBarry Smith typedef struct {
3815ea7661aSPierre Jolivet   Mat           workB, workB1;
3824324174eSBarry Smith   MPI_Request  *rwaits, *swaits;
38387753ddeSHong Zhang   PetscInt      nsends, nrecvs;
38487753ddeSHong Zhang   MPI_Datatype *stype, *rtype;
3856718818eSStefano Zampini   PetscInt      blda;
3864324174eSBarry Smith } MPIAIJ_MPIDense;
3874324174eSBarry Smith 
388*cc1eb50dSBarry Smith static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void **ctx)
389d71ae5a4SJacob Faibussowitsch {
390*cc1eb50dSBarry Smith   MPIAIJ_MPIDense *contents = *(MPIAIJ_MPIDense **)ctx;
39187753ddeSHong Zhang   PetscInt         i;
3924324174eSBarry Smith 
3934324174eSBarry Smith   PetscFunctionBegin;
3949566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
3959566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
39648a46eb9SPierre Jolivet   for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
39748a46eb9SPierre Jolivet   for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
3989566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
3999566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4014324174eSBarry Smith }
4024324174eSBarry Smith 
403d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
404d71ae5a4SJacob Faibussowitsch {
405f32d5d43SBarry Smith   Mat_MPIAIJ      *aij = (Mat_MPIAIJ *)A->data;
4066497c311SBarry Smith   PetscInt         nz  = aij->B->cmap->n, blda, m, M, n, N;
4074324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4084324174eSBarry Smith   VecScatter       ctx = aij->Mvctx;
4096497c311SBarry Smith   PetscInt         Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb;
41087753ddeSHong Zhang   MPI_Comm         comm;
41187753ddeSHong Zhang   MPI_Datatype     type1, *stype, *rtype;
41287753ddeSHong Zhang   const PetscInt  *sindices, *sstarts, *rstarts;
4136497c311SBarry Smith   PetscMPIInt     *disp, nsends, nrecvs, nrows_to, nrows_from;
4146718818eSStefano Zampini   PetscBool        cisdense;
4159123193aSHong Zhang 
4169123193aSHong Zhang   PetscFunctionBegin;
4176718818eSStefano Zampini   MatCheckProduct(C, 4);
41828b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4199566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4209566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
42148a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4229566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C, &m, &n));
4239566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C, &M, &N));
42448a46eb9SPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4259566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
4269566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4279566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
4289566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4294324174eSBarry Smith 
4309566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4319566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
43287753ddeSHong Zhang 
43387753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
43487753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
43587753ddeSHong Zhang   if (nz) {
43687753ddeSHong Zhang     Bbn1 = 2 * Am * BN / nz;
437da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
43887753ddeSHong Zhang   } else Bbn1 = BN;
43987753ddeSHong Zhang 
44058b7e2c1SStefano Zampini   bs   = B->cmap->bs;
44187753ddeSHong Zhang   Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
44287753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
443462c564dSBarry Smith   PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
44487753ddeSHong Zhang 
44587753ddeSHong Zhang   /* Enable runtime option for Bbn */
446d0609cedSBarry Smith   PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat");
4479566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL));
448d0609cedSBarry Smith   PetscOptionsEnd();
4496718818eSStefano Zampini   Bbn = PetscMin(Bbn, BN);
45087753ddeSHong Zhang 
4516718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4525ea7661aSPierre Jolivet     numBb = BN / Bbn;
4535ea7661aSPierre Jolivet     Bbn1  = BN - numBb * Bbn;
4545ea7661aSPierre Jolivet   } else numBb = 0;
45587753ddeSHong Zhang 
4565ea7661aSPierre Jolivet   if (numBb) {
4579566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4585ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4599566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
46087753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4619566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4625ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
46387753ddeSHong Zhang   }
46487753ddeSHong Zhang 
46587753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4669566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
46787753ddeSHong Zhang 
46887753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
47087753ddeSHong Zhang   contents->stype  = stype;
47187753ddeSHong Zhang   contents->nsends = nsends;
47287753ddeSHong Zhang 
47387753ddeSHong Zhang   contents->rtype  = rtype;
47487753ddeSHong Zhang   contents->nrecvs = nrecvs;
4756718818eSStefano Zampini   contents->blda   = blda;
47687753ddeSHong Zhang 
4779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm + 1, &disp));
4786497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) {
4796497c311SBarry Smith     PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to));
4806497c311SBarry Smith     for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */
4819566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4829566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4839566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
48587753ddeSHong Zhang   }
48687753ddeSHong Zhang 
4876497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) {
48887753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
4896497c311SBarry Smith     PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from));
49087753ddeSHong Zhang     disp[0] = 0;
4919566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
4929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
4939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
4949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
49587753ddeSHong Zhang   }
49687753ddeSHong Zhang 
4979566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
4989566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4999566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
5009566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
5019566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
5029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
5036718818eSStefano Zampini 
5046718818eSStefano Zampini   C->product->data       = contents;
5056718818eSStefano Zampini   C->product->destroy    = MatMPIAIJ_MPIDenseDestroy;
5064222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5089123193aSHong Zhang }
5099123193aSHong Zhang 
51093aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
5119612af27SStefano Zampini 
512f32d5d43SBarry Smith /*
5132636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5142636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
51587753ddeSHong Zhang 
5169612af27SStefano Zampini     Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
517f32d5d43SBarry Smith */
5189612af27SStefano Zampini 
51966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB)
520d71ae5a4SJacob Faibussowitsch {
521f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
5221683a169SBarry Smith   const PetscScalar *b;
52387753ddeSHong Zhang   PetscScalar       *rvalues;
524f32d5d43SBarry Smith   VecScatter         ctx = aij->Mvctx;
52587753ddeSHong Zhang   const PetscInt    *sindices, *sstarts, *rstarts;
5263515ee7fSJunchao Zhang   const PetscMPIInt *sprocs, *rprocs;
5276497c311SBarry Smith   PetscMPIInt        nsends, nrecvs;
528f32d5d43SBarry Smith   MPI_Request       *swaits, *rwaits;
529ce94432eSBarry Smith   MPI_Comm           comm;
5306497c311SBarry Smith   PetscMPIInt        tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi;
5314324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5324324174eSBarry Smith   Mat                workB;
53387753ddeSHong Zhang   MPI_Datatype      *stype, *rtype;
5346718818eSStefano Zampini   PetscInt           blda;
535f32d5d43SBarry Smith 
536f32d5d43SBarry Smith   PetscFunctionBegin;
5376718818eSStefano Zampini   MatCheckProduct(C, 4);
53828b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5396497c311SBarry Smith   PetscCall(PetscMPIIntCast(B->cmap->N, &ncols));
5406497c311SBarry Smith   PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows));
5416718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
5429566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5439566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5449566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5459566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
546b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
547b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
54808401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5493515ee7fSJunchao Zhang   swaits = contents->swaits;
5503515ee7fSJunchao Zhang   rwaits = contents->rwaits;
551f32d5d43SBarry Smith 
5529566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &b));
5539566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
55408401ef6SPierre Jolivet   PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5559566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB, &rvalues));
556f32d5d43SBarry Smith 
55787753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5589566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
55987753ddeSHong Zhang   rtype = contents->rtype;
5606497c311SBarry Smith   for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
561f32d5d43SBarry Smith 
56287753ddeSHong Zhang   stype = contents->stype;
5636497c311SBarry Smith   for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5642636ff26SBarry Smith 
5659566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5669566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
567f32d5d43SBarry Smith 
5689566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5699566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5709566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &b));
5719566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB, &rvalues));
5723ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57387753ddeSHong Zhang }
574f32d5d43SBarry Smith 
575d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C)
576d71ae5a4SJacob Faibussowitsch {
577f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ *)A->data;
578f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense *)B->data;
579f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense *)C->data;
580f32d5d43SBarry Smith   Mat              workB;
58187753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5829123193aSHong Zhang 
5839123193aSHong Zhang   PetscFunctionBegin;
5846718818eSStefano Zampini   MatCheckProduct(C, 3);
58528b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5866718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
587f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5885ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
589fb842aefSJose E. Roman   PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_CURRENT, &cdense->A));
5905ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
59187753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
5929566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
593f32d5d43SBarry Smith 
594f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
5959566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
59687753ddeSHong Zhang   } else {
5975ea7661aSPierre Jolivet     Mat       Bb, Cb;
5986497c311SBarry Smith     PetscInt  BN = B->cmap->N, n = contents->workB->cmap->n;
599664c1e85SStefano Zampini     PetscBool ccpu;
60087753ddeSHong Zhang 
60108401ef6SPierre Jolivet     PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
602664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
603664c1e85SStefano Zampini        when getting and restoring the submatrix
604664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6059566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C, &ccpu));
6069566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, PETSC_TRUE));
6076497c311SBarry Smith     for (PetscInt i = 0; i < BN; i += n) {
608a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
609a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
61087753ddeSHong Zhang 
6115ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6129566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6135ea7661aSPierre Jolivet 
6145ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6155ea7661aSPierre Jolivet       cdense = (Mat_MPIDense *)Cb->data;
6169566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6179566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6189566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
61987753ddeSHong Zhang     }
6209566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, ccpu));
62187753ddeSHong Zhang   }
6223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6239123193aSHong Zhang }
624cf1a0672SHong Zhang 
625d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C)
626d71ae5a4SJacob Faibussowitsch {
627cf1a0672SHong Zhang   Mat_MPIAIJ          *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
628f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
629f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
630cf1a0672SHong Zhang   PetscInt            *adi = ad->i, *adj, *aoi = ao->i, *aoj;
631cf1a0672SHong Zhang   PetscScalar         *ada, *aoa, *cda = cd->a, *coa = co->a;
632cf1a0672SHong Zhang   Mat_SeqAIJ          *p_loc, *p_oth;
633cf1a0672SHong Zhang   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
63429825010SHong Zhang   PetscScalar         *pa_loc, *pa_oth, *pa, valtmp, *ca;
63529825010SHong Zhang   PetscInt             cm = C->rmap->n, anz, pnz;
636*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
63780da8df7SHong Zhang   PetscScalar         *apa_sparse;
638ce496241SStefano Zampini   const PetscScalar   *dummy;
639cf1a0672SHong Zhang   PetscInt            *api, *apj, *apJ, i, j, k, row;
64029825010SHong Zhang   PetscInt             cstart = C->cmap->rstart;
64129825010SHong Zhang   PetscInt             cdnz, conz, k0, k1, nextp;
642a7c7454dSHong Zhang   MPI_Comm             comm;
643a7c7454dSHong Zhang   PetscMPIInt          size;
6441634b032SHong Zhang 
6451634b032SHong Zhang   PetscFunctionBegin;
6466718818eSStefano Zampini   MatCheckProduct(C, 3);
647*cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
64828b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6499566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6509566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
651aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
652a7c7454dSHong Zhang 
65365e4b4d4SStefano Zampini   /* flag CPU mask for C */
65465e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
65565e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
65665e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
65765e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
65865e4b4d4SStefano Zampini #endif
65980da8df7SHong Zhang   apa_sparse = ptap->apa;
66080da8df7SHong Zhang 
661cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
662cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6639566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6649566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
665cf1a0672SHong Zhang 
666cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
667cf1a0672SHong Zhang   /* get data from symbolic products */
668f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
6699371c9d4SSatish Balay   pi_loc = p_loc->i;
6709371c9d4SSatish Balay   pj_loc = p_loc->j;
6719371c9d4SSatish Balay   pa_loc = p_loc->a;
672a7c7454dSHong Zhang   if (size > 1) {
673f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
6749371c9d4SSatish Balay     pi_oth = p_oth->i;
6759371c9d4SSatish Balay     pj_oth = p_oth->j;
6769371c9d4SSatish Balay     pa_oth = p_oth->a;
67720e3dc75SHong Zhang   } else {
6789371c9d4SSatish Balay     p_oth  = NULL;
6799371c9d4SSatish Balay     pi_oth = NULL;
6809371c9d4SSatish Balay     pj_oth = NULL;
6819371c9d4SSatish Balay     pa_oth = NULL;
682a7c7454dSHong Zhang   }
683cf1a0672SHong Zhang 
684ce496241SStefano Zampini   /* trigger copy to CPU */
6859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
6869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
6879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
6889566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
68929825010SHong Zhang   api = ptap->api;
69029825010SHong Zhang   apj = ptap->apj;
691cf1a0672SHong Zhang   for (i = 0; i < cm; i++) {
69229825010SHong Zhang     apJ = apj + api[i];
69329825010SHong Zhang 
694cf1a0672SHong Zhang     /* diagonal portion of A */
695cf1a0672SHong Zhang     anz = adi[i + 1] - adi[i];
696cf1a0672SHong Zhang     adj = ad->j + adi[i];
697cf1a0672SHong Zhang     ada = ad->a + adi[i];
698cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
699cf1a0672SHong Zhang       row = adj[j];
700cf1a0672SHong Zhang       pnz = pi_loc[row + 1] - pi_loc[row];
701cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
702cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
70329825010SHong Zhang       /* perform sparse axpy */
704cf1a0672SHong Zhang       valtmp = ada[j];
70529825010SHong Zhang       nextp  = 0;
70629825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
70729825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
70829825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
70929825010SHong Zhang         }
7101634b032SHong Zhang       }
7119566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
712cf1a0672SHong Zhang     }
7131634b032SHong Zhang 
714cf1a0672SHong Zhang     /* off-diagonal portion of A */
715cf1a0672SHong Zhang     anz = aoi[i + 1] - aoi[i];
7168e3a54c0SPierre Jolivet     aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]);
7178e3a54c0SPierre Jolivet     aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]);
718cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
719cf1a0672SHong Zhang       row = aoj[j];
720cf1a0672SHong Zhang       pnz = pi_oth[row + 1] - pi_oth[row];
721cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
722cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
72329825010SHong Zhang       /* perform sparse axpy */
724cf1a0672SHong Zhang       valtmp = aoa[j];
72529825010SHong Zhang       nextp  = 0;
72629825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
72729825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
72829825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
72929825010SHong Zhang         }
730cf1a0672SHong Zhang       }
7319566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
732cf1a0672SHong Zhang     }
7331634b032SHong Zhang 
734cf1a0672SHong Zhang     /* set values in C */
735cf1a0672SHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
736cf1a0672SHong Zhang     conz = co->i[i + 1] - co->i[i];
7371634b032SHong Zhang 
738910cf402Sprj-     /* 1st off-diagonal part of C */
7398e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
740cf1a0672SHong Zhang     k  = 0;
741cf1a0672SHong Zhang     for (k0 = 0; k0 < conz; k0++) {
742cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
74329825010SHong Zhang       ca[k0]        = apa_sparse[k];
74429825010SHong Zhang       apa_sparse[k] = 0.0;
745cf1a0672SHong Zhang       k++;
746cf1a0672SHong Zhang     }
7471634b032SHong Zhang 
748cf1a0672SHong Zhang     /* diagonal part of C */
749cf1a0672SHong Zhang     ca = cda + cd->i[i];
750cf1a0672SHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
75129825010SHong Zhang       ca[k1]        = apa_sparse[k];
75229825010SHong Zhang       apa_sparse[k] = 0.0;
753cf1a0672SHong Zhang       k++;
754cf1a0672SHong Zhang     }
755cf1a0672SHong Zhang 
756910cf402Sprj-     /* 2nd off-diagonal part of C */
7578e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
758cf1a0672SHong Zhang     for (; k0 < conz; k0++) {
75929825010SHong Zhang       ca[k0]        = apa_sparse[k];
76029825010SHong Zhang       apa_sparse[k] = 0.0;
761cf1a0672SHong Zhang       k++;
762cf1a0672SHong Zhang     }
763cf1a0672SHong Zhang   }
7649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
7663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
767cf1a0672SHong Zhang }
768cf1a0672SHong Zhang 
7690fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
770d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C)
771d71ae5a4SJacob Faibussowitsch {
772ce94432eSBarry Smith   MPI_Comm             comm;
773a7c7454dSHong Zhang   PetscMPIInt          size;
774*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
7750298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
7766718818eSStefano Zampini   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
777f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
7787dbaa2c6Sandi selinger   PetscInt            *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
779cf1a0672SHong Zhang   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
7808c78258cSHong Zhang   PetscInt             i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
781e5ab8c0aSKarl Rupp   PetscInt             am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
782cf1a0672SHong Zhang   PetscReal            afill;
783b92f168fSBarry Smith   MatType              mtype;
784cf1a0672SHong Zhang 
785cf1a0672SHong Zhang   PetscFunctionBegin;
7866718818eSStefano Zampini   MatCheckProduct(C, 4);
78728b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
7889566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
7899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
790a7c7454dSHong Zhang 
791*cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
7929566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
793cf1a0672SHong Zhang 
794cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
7959566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
79619f0e57aSHong Zhang 
797cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
7989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
799cf1a0672SHong Zhang 
800f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
8019371c9d4SSatish Balay   pi_loc = p_loc->i;
8029371c9d4SSatish Balay   pj_loc = p_loc->j;
803a7c7454dSHong Zhang   if (size > 1) {
804f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
8059371c9d4SSatish Balay     pi_oth = p_oth->i;
8069371c9d4SSatish Balay     pj_oth = p_oth->j;
807968382fdSHong Zhang   } else {
80820e3dc75SHong Zhang     p_oth  = NULL;
8099371c9d4SSatish Balay     pi_oth = NULL;
8109371c9d4SSatish Balay     pj_oth = NULL;
811a7c7454dSHong Zhang   }
812cf1a0672SHong Zhang 
813cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
81484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
815cf1a0672SHong Zhang   ptap->api = api;
816cf1a0672SHong Zhang   api[0]    = 0;
817cf1a0672SHong Zhang 
8189566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
819cf1a0672SHong Zhang 
820cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8219566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
822cf1a0672SHong Zhang   current_space = free_space;
823d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
824cf1a0672SHong Zhang   for (i = 0; i < am; i++) {
825cf1a0672SHong Zhang     /* diagonal portion of A */
826cf1a0672SHong Zhang     nzi = adi[i + 1] - adi[i];
827cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
828cf1a0672SHong Zhang       row  = *adj++;
829cf1a0672SHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
830cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8318a210135Sandi selinger       /* Expand list if it is not long enough */
8328328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8338328dd82Sandi selinger         lsize = pnz + apnz_max;
8349566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8358a210135Sandi selinger       }
836cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8379566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8388a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8398a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8408c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
841cf1a0672SHong Zhang     }
842cf1a0672SHong Zhang     /* off-diagonal portion of A */
843cf1a0672SHong Zhang     nzi = aoi[i + 1] - aoi[i];
844cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
845cf1a0672SHong Zhang       row  = *aoj++;
846cf1a0672SHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
847cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8488a210135Sandi selinger       /* Expand list if it is not long enough */
8498328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8508328dd82Sandi selinger         lsize = pnz + apnz_max;
8519566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8528a210135Sandi selinger       }
8538a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8549566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8558a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8568a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8578c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
858cf1a0672SHong Zhang     }
8598c78258cSHong Zhang 
8608c78258cSHong Zhang     /* add missing diagonal entry */
8618c78258cSHong Zhang     if (C->force_diagonals) {
8628c78258cSHong Zhang       j = i + rstart; /* column index */
8639566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8648c78258cSHong Zhang     }
8658c78258cSHong Zhang 
866f84c536bSHong Zhang     apnz       = *lnk;
867cf1a0672SHong Zhang     api[i + 1] = api[i] + apnz;
8688a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
869cf1a0672SHong Zhang 
870cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
871cf1a0672SHong Zhang     if (current_space->local_remaining < apnz) {
8729566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
873cf1a0672SHong Zhang       nspacedouble++;
874cf1a0672SHong Zhang     }
875cf1a0672SHong Zhang 
876cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8779566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
8789566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
8792205254eSKarl Rupp 
880cf1a0672SHong Zhang     current_space->array += apnz;
881cf1a0672SHong Zhang     current_space->local_used += apnz;
882cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
883cf1a0672SHong Zhang   }
884cf1a0672SHong Zhang 
885cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
886cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
88784648c2dSPierre Jolivet   PetscCall(PetscMalloc1(api[am], &ptap->apj));
888cf1a0672SHong Zhang   apj = ptap->apj;
8899566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
8909566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
891cf1a0672SHong Zhang 
8924222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
8939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
8949566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
8959566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
8969566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
8979566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
898d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
899cf1a0672SHong Zhang 
9004222ddf1SHong Zhang   /* malloc apa for assembly C */
9019566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
90217f75172Sandi selinger 
9039566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
9049566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
9059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
9069566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
907cf1a0672SHong Zhang 
9084222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9094222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
910cf1a0672SHong Zhang 
9114222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9126718818eSStefano Zampini   C->product->data    = ptap;
913*cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
914cf1a0672SHong Zhang 
915cf1a0672SHong Zhang   /* set MatInfo */
916118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
917cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9184222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9194222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9204222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
921cf1a0672SHong Zhang 
922cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
923cf1a0672SHong Zhang   if (api[am]) {
9249566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9259566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
926cf1a0672SHong Zhang   } else {
9279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
928cf1a0672SHong Zhang   }
929cf1a0672SHong Zhang #endif
9303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9311634b032SHong Zhang }
932f96d37fcSHong Zhang 
933a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
934a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
935a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
936d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out)
937d71ae5a4SJacob Faibussowitsch {
938a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
939a9d7e0ccSandi selinger 
940a9d7e0ccSandi selinger   /* Traverse all three arrays */
941a9d7e0ccSandi selinger   while (i < size1 && j < size2 && k < size3) {
942a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
943a9d7e0ccSandi selinger       out[l++] = in1[i++];
9449371c9d4SSatish Balay     } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
945a9d7e0ccSandi selinger       out[l++] = in2[j++];
9469371c9d4SSatish Balay     } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
947a9d7e0ccSandi selinger       out[l++] = in3[k++];
9489371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
949a9d7e0ccSandi selinger       out[l++] = in1[i];
950a9d7e0ccSandi selinger       i++, j++;
9519371c9d4SSatish Balay     } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
952a9d7e0ccSandi selinger       out[l++] = in1[i];
953a9d7e0ccSandi selinger       i++, k++;
9549371c9d4SSatish Balay     } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
955a9d7e0ccSandi selinger       out[l++] = in2[j];
956a9d7e0ccSandi selinger       k++, j++;
9579371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
958a9d7e0ccSandi selinger       out[l++] = in1[i];
959a9d7e0ccSandi selinger       i++, j++, k++;
960a9d7e0ccSandi selinger     }
961a9d7e0ccSandi selinger   }
962a9d7e0ccSandi selinger 
963a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
964a9d7e0ccSandi selinger   while (i < size1 && j < size2) {
965a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
966a9d7e0ccSandi selinger       out[l++] = in1[i++];
9679371c9d4SSatish Balay     } else if (in1[i] > in2[j]) {
968a9d7e0ccSandi selinger       out[l++] = in2[j++];
9699371c9d4SSatish Balay     } else {
970a9d7e0ccSandi selinger       out[l++] = in1[i];
971a9d7e0ccSandi selinger       i++, j++;
972a9d7e0ccSandi selinger     }
973a9d7e0ccSandi selinger   }
974a9d7e0ccSandi selinger 
975a9d7e0ccSandi selinger   while (i < size1 && k < size3) {
976a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
977a9d7e0ccSandi selinger       out[l++] = in1[i++];
9789371c9d4SSatish Balay     } else if (in1[i] > in3[k]) {
979a9d7e0ccSandi selinger       out[l++] = in3[k++];
9809371c9d4SSatish Balay     } else {
981a9d7e0ccSandi selinger       out[l++] = in1[i];
982a9d7e0ccSandi selinger       i++, k++;
983a9d7e0ccSandi selinger     }
984a9d7e0ccSandi selinger   }
985a9d7e0ccSandi selinger 
986a9d7e0ccSandi selinger   while (k < size3 && j < size2) {
987a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
988a9d7e0ccSandi selinger       out[l++] = in3[k++];
9899371c9d4SSatish Balay     } else if (in3[k] > in2[j]) {
990a9d7e0ccSandi selinger       out[l++] = in2[j++];
9919371c9d4SSatish Balay     } else {
992a9d7e0ccSandi selinger       out[l++] = in3[k];
993a9d7e0ccSandi selinger       k++, j++;
994a9d7e0ccSandi selinger     }
995a9d7e0ccSandi selinger   }
996a9d7e0ccSandi selinger 
997a9d7e0ccSandi selinger   /* Traverse one remaining array */
998a9d7e0ccSandi selinger   while (i < size1) out[l++] = in1[i++];
999a9d7e0ccSandi selinger   while (j < size2) out[l++] = in2[j++];
1000a9d7e0ccSandi selinger   while (k < size3) out[l++] = in3[k++];
1001a9d7e0ccSandi selinger 
1002a9d7e0ccSandi selinger   *size4 = l;
1003a9d7e0ccSandi selinger }
1004a9d7e0ccSandi selinger 
100573b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
100673b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
100773b67375Sandi selinger /* matrix-matrix multiplications.  */
1008d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1009d71ae5a4SJacob Faibussowitsch {
1010a9d7e0ccSandi selinger   MPI_Comm             comm;
1011a9d7e0ccSandi selinger   PetscMPIInt          size;
1012*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1013a9d7e0ccSandi selinger   PetscFreeSpaceList   free_space_diag = NULL, current_space = NULL;
1014a9d7e0ccSandi selinger   Mat_MPIAIJ          *a  = (Mat_MPIAIJ *)A->data;
1015f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc;
1016a9d7e0ccSandi selinger   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data;
1017a9d7e0ccSandi selinger   Mat_SeqAIJ          *adpd_seq, *p_off, *aopoth_seq;
1018a9d7e0ccSandi selinger   PetscInt             adponz, adpdnz;
10197dbaa2c6Sandi selinger   PetscInt            *pi_loc, *dnz, *onz;
1020a9d7e0ccSandi selinger   PetscInt            *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10219371c9d4SSatish Balay   PetscInt            *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1022a016958eSandi selinger   PetscInt             am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1023a9d7e0ccSandi selinger   PetscBT              lnkbt;
1024a9d7e0ccSandi selinger   PetscReal            afill;
1025a9d7e0ccSandi selinger   PetscMPIInt          rank;
1026a9d7e0ccSandi selinger   Mat                  adpd, aopoth;
1027b92f168fSBarry Smith   MatType              mtype;
1028e83e5f86SFande Kong   const char          *prefix;
1029a9d7e0ccSandi selinger 
1030a9d7e0ccSandi selinger   PetscFunctionBegin;
10316718818eSStefano Zampini   MatCheckProduct(C, 4);
103228b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10339566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10349566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
10359566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10369566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1037a9d7e0ccSandi selinger 
1038*cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
10399566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1040a9d7e0ccSandi selinger 
1041a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10429566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1043a9d7e0ccSandi selinger 
1044a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10459566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1046a9d7e0ccSandi selinger 
1047f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
1048a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1049a9d7e0ccSandi selinger 
1050a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
105184648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &api));
105284648c2dSPierre Jolivet   PetscCall(PetscMalloc1(am + 1, &adpoi));
1053a9d7e0ccSandi selinger 
1054a9d7e0ccSandi selinger   adpoi[0]  = 0;
1055a9d7e0ccSandi selinger   ptap->api = api;
1056a9d7e0ccSandi selinger   api[0]    = 0;
1057a9d7e0ccSandi selinger 
1058a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10599566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1060d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
1061a9d7e0ccSandi selinger 
1062a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10639566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10649566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10659566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10669566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd, prefix));
10679566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10684222ddf1SHong Zhang 
10699566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
10709566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
10719566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd, fill));
10729566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10738c78258cSHong Zhang 
10748c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10759566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10764222ddf1SHong Zhang 
1077a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
10789371c9d4SSatish Balay   adpdi    = adpd_seq->i;
10799371c9d4SSatish Balay   adpdj    = adpd_seq->j;
1080f4f49eeaSPierre Jolivet   p_off    = (Mat_SeqAIJ *)p->B->data;
10819371c9d4SSatish Balay   poff_i   = p_off->i;
10829371c9d4SSatish Balay   poff_j   = p_off->j;
1083a9d7e0ccSandi selinger 
108473b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
108584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(pN, &j_temp));
1086a9d7e0ccSandi selinger 
1087a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1088a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
10899566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1090a9d7e0ccSandi selinger   current_space = free_space_diag;
1091a9d7e0ccSandi selinger 
1092a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1093a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1094a9d7e0ccSandi selinger     nzi = adi[i + 1] - adi[i];
1095a9d7e0ccSandi selinger     for (j = 0; j < nzi; j++) {
1096a9d7e0ccSandi selinger       row  = *adj++;
1097a9d7e0ccSandi selinger       pnz  = poff_i[row + 1] - poff_i[row];
1098a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1099ad540459SPierre Jolivet       for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]];
1100a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11019566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1102a9d7e0ccSandi selinger     }
1103a9d7e0ccSandi selinger 
1104a9d7e0ccSandi selinger     adponz       = lnk[0];
1105a9d7e0ccSandi selinger     adpoi[i + 1] = adpoi[i] + adponz;
1106a9d7e0ccSandi selinger 
1107a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1108a9d7e0ccSandi selinger     if (current_space->local_remaining < adponz) {
11099566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), &current_space));
1110a9d7e0ccSandi selinger       nspacedouble++;
1111a9d7e0ccSandi selinger     }
1112a9d7e0ccSandi selinger 
1113a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11149566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1115a9d7e0ccSandi selinger 
1116a9d7e0ccSandi selinger     current_space->array += adponz;
1117a9d7e0ccSandi selinger     current_space->local_used += adponz;
1118a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1119a9d7e0ccSandi selinger   }
1120a9d7e0ccSandi selinger 
1121a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11229566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B, prefix));
11239566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11249566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11259566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1126a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11279371c9d4SSatish Balay   aopothi    = aopoth_seq->i;
11289371c9d4SSatish Balay   aopothj    = aopoth_seq->j;
1129a9d7e0ccSandi selinger 
1130a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1131a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1132a9d7e0ccSandi selinger 
113384648c2dSPierre Jolivet   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj));
113484648c2dSPierre Jolivet   PetscCall(PetscMalloc1(adpoi[am], &adpoj));
1135a9d7e0ccSandi selinger 
1136a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11379566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11389566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
1139a9d7e0ccSandi selinger 
1140a9d7e0ccSandi selinger   adpoJ = adpoj;
1141a9d7e0ccSandi selinger   adpdJ = adpdj;
1142a9d7e0ccSandi selinger   aopJ  = aopothj;
1143a9d7e0ccSandi selinger   apj   = ptap->apj;
1144a9d7e0ccSandi selinger   apJ   = apj; /* still empty */
1145a9d7e0ccSandi selinger 
1146a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1147a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1148a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1149a9d7e0ccSandi selinger     aopnz  = aopothi[i + 1] - aopothi[i];
1150a9d7e0ccSandi selinger     adponz = adpoi[i + 1] - adpoi[i];
1151a9d7e0ccSandi selinger     adpdnz = adpdi[i + 1] - adpdi[i];
1152a9d7e0ccSandi selinger 
1153a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1154ad540459SPierre Jolivet     for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart;
1155a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1156a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11579566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1158a9d7e0ccSandi selinger 
1159a9d7e0ccSandi selinger     aopJ += aopnz;
1160a9d7e0ccSandi selinger     adpoJ += adponz;
1161a9d7e0ccSandi selinger     adpdJ += adpdnz;
1162a9d7e0ccSandi selinger     apJ += apnz;
1163a9d7e0ccSandi selinger     api[i + 1] = api[i] + apnz;
1164a9d7e0ccSandi selinger   }
1165a9d7e0ccSandi selinger 
1166a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
116784648c2dSPierre Jolivet   PetscCall(PetscCalloc1(pN, &ptap->apa));
1168a9d7e0ccSandi selinger 
11694222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11709566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
11719566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
11729566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
11739566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
11749566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1175d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
117617f75172Sandi selinger 
11779566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
11789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
11799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
11809566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
118117f75172Sandi selinger 
11824222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11834222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1184a9d7e0ccSandi selinger 
11854222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11866718818eSStefano Zampini   C->product->data    = ptap;
1187*cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult;
1188a9d7e0ccSandi selinger 
1189a9d7e0ccSandi selinger   /* set MatInfo */
119073b67375Sandi selinger   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
119173b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
11924222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
11934222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
11944222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1195a9d7e0ccSandi selinger 
1196a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1197a9d7e0ccSandi selinger   if (api[am]) {
11989566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
11999566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1200a9d7e0ccSandi selinger   } else {
12019566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1202a9d7e0ccSandi selinger   }
1203a9d7e0ccSandi selinger #endif
1204a9d7e0ccSandi selinger 
12059566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12069566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12079566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12089566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12099566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
12103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1211a9d7e0ccSandi selinger }
1212a9d7e0ccSandi selinger 
1213c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1214d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C)
1215d71ae5a4SJacob Faibussowitsch {
1216*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
121760552ceaSHong Zhang   Mat                  Pt;
1218c216dbf3SHong Zhang 
1219c216dbf3SHong Zhang   PetscFunctionBegin;
12206718818eSStefano Zampini   MatCheckProduct(C, 3);
1221*cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
122228b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
122328b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
122460552ceaSHong Zhang 
122560552ceaSHong Zhang   Pt = ptap->Pt;
12261cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(P, Pt));
12279566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12289566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
12293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1230f96d37fcSHong Zhang }
1231f96d37fcSHong Zhang 
1232c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
1233d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C)
1234d71ae5a4SJacob Faibussowitsch {
1235*cc1eb50dSBarry Smith   MatProductCtx_APMPI     *ptap;
12366718818eSStefano Zampini   Mat_MPIAIJ              *p = (Mat_MPIAIJ *)P->data;
1237912837bbSHong Zhang   MPI_Comm                 comm;
1238912837bbSHong Zhang   PetscMPIInt              size, rank;
1239912837bbSHong Zhang   PetscFreeSpaceList       free_space = NULL, current_space = NULL;
12404ede91e3SHong Zhang   PetscInt                 pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
12416497c311SBarry Smith   PetscInt                *lnk, i, k, rstart;
1242912837bbSHong Zhang   PetscBT                  lnkbt;
12436497c311SBarry Smith   PetscMPIInt              tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend;
1244ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted = 0;
12458c78258cSHong Zhang   PetscInt               **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12466497c311SBarry Smith   PetscInt                 len, *dnz, *onz, *owners, nzi;
1247912837bbSHong Zhang   PetscInt                 nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1248912837bbSHong Zhang   MPI_Request             *swaits, *rwaits;
1249912837bbSHong Zhang   MPI_Status              *sstatus, rstatus;
1250912837bbSHong Zhang   PetscLayout              rowmap;
1251912837bbSHong Zhang   PetscInt                *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1252912837bbSHong Zhang   PetscMPIInt             *len_r, *id_r;          /* array of length of comm->size, store send/recv matrix values */
12537f3e1f30SHong Zhang   PetscInt                *Jptr, *prmap = p->garray, con, j, Crmax;
12544ede91e3SHong Zhang   Mat_SeqAIJ              *a_loc, *c_loc, *c_oth;
1255eec179cfSJacob Faibussowitsch   PetscHMapI               ta;
1256b92f168fSBarry Smith   MatType                  mtype;
1257e83e5f86SFande Kong   const char              *prefix;
1258912837bbSHong Zhang 
1259912837bbSHong Zhang   PetscFunctionBegin;
12609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
12629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1263912837bbSHong Zhang 
12644222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12659566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
12669566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
1267912837bbSHong Zhang 
12684222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1269912837bbSHong Zhang 
1270*cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
12719566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1272912837bbSHong Zhang 
1273912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1274acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1275acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1276912837bbSHong Zhang 
1277669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
12789566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1279912837bbSHong Zhang 
12804ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
12819566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
12829566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
12839566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
12849566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
12859566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1286912837bbSHong Zhang 
1287912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1288912837bbSHong Zhang   /* determine row ownership */
12899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &rowmap));
1290912837bbSHong Zhang   rowmap->n  = pn;
1291912837bbSHong Zhang   rowmap->bs = 1;
12929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1293912837bbSHong Zhang   owners = rowmap->range;
1294912837bbSHong Zhang 
1295912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
129684648c2dSPierre Jolivet   PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co));
12979566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s, size));
12989566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si, size));
1299912837bbSHong Zhang 
1300912837bbSHong Zhang   c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
13019371c9d4SSatish Balay   coi   = c_oth->i;
13029371c9d4SSatish Balay   coj   = c_oth->j;
1303912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1304912837bbSHong Zhang   proc  = 0;
1305912837bbSHong Zhang   for (i = 0; i < con; i++) {
1306912837bbSHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
13077f3e1f30SHong Zhang     len_si[proc]++;                     /* num of rows in Co(=Pt*A) to be sent to [proc] */
1308912837bbSHong Zhang     len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1309912837bbSHong Zhang   }
1310912837bbSHong Zhang 
1311912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1312912837bbSHong Zhang   owners_co[0] = 0;
1313912837bbSHong Zhang   nsend        = 0;
1314912837bbSHong Zhang   for (proc = 0; proc < size; proc++) {
1315912837bbSHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1316912837bbSHong Zhang     if (len_s[proc]) {
1317912837bbSHong Zhang       nsend++;
1318912837bbSHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1319912837bbSHong Zhang       len += len_si[proc];
1320912837bbSHong Zhang     }
1321912837bbSHong Zhang   }
1322912837bbSHong Zhang 
1323912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13249566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13259566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1326912837bbSHong Zhang 
1327912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13289566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
13299566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
133084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(nsend, &swaits));
1331912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1332912837bbSHong Zhang     if (!len_s[proc]) continue;
1333912837bbSHong Zhang     i = owners_co[proc];
13346497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1335912837bbSHong Zhang     k++;
1336912837bbSHong Zhang   }
1337912837bbSHong Zhang 
13387f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
13399566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13409566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13419566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13429566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1343912837bbSHong Zhang   c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1344912837bbSHong Zhang 
1345912837bbSHong Zhang   /* receives coj are complete */
134648a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13479566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13489566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1349912837bbSHong Zhang 
1350912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
1351f4f49eeaSPierre Jolivet   a_loc = (Mat_SeqAIJ *)ptap->A_loc->data;
1352669e9c86SHong Zhang 
1353669e9c86SHong Zhang   /* create and initialize a linked list */
1354eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */
13554ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1356669e9c86SHong Zhang 
1357912837bbSHong Zhang   for (k = 0; k < nrecv; k++) { /* k-th received message */
1358912837bbSHong Zhang     Jptr = buf_rj[k];
1359c76ffc5fSJacob Faibussowitsch     for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
1360912837bbSHong Zhang   }
1361eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
1362eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
1363912837bbSHong Zhang 
1364912837bbSHong Zhang   /* (4) send and recv coi */
13659566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
13669566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
136784648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1368912837bbSHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1369912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1370912837bbSHong Zhang     if (!len_s[proc]) continue;
1371912837bbSHong Zhang     /* form outgoing message for i-structure:
1372912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1373912837bbSHong Zhang                [1:nrows]:           row index (global)
1374912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1375912837bbSHong Zhang     */
1376912837bbSHong Zhang     nrows       = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1377912837bbSHong Zhang     buf_si_i    = buf_si + nrows + 1;
1378912837bbSHong Zhang     buf_si[0]   = nrows;
1379912837bbSHong Zhang     buf_si_i[0] = 0;
1380912837bbSHong Zhang     nrows       = 0;
1381912837bbSHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1382912837bbSHong Zhang       nzi                 = coi[i + 1] - coi[i];
1383912837bbSHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1384912837bbSHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1385912837bbSHong Zhang       nrows++;
1386912837bbSHong Zhang     }
13876497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1388912837bbSHong Zhang     k++;
1389912837bbSHong Zhang     buf_si += len_si[proc];
1390912837bbSHong Zhang   }
139148a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13929566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13939566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1394912837bbSHong Zhang 
13959566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
13969566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
13979566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
13989566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1399912837bbSHong Zhang 
14004222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1401bbea24aaSStefano Zampini   /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */
14029566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1403912837bbSHong Zhang   current_space = free_space;
1404912837bbSHong Zhang 
14059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1406912837bbSHong Zhang   for (k = 0; k < nrecv; k++) {
1407912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1408912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1409912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1410a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1411912837bbSHong Zhang   }
1412912837bbSHong Zhang 
1413d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, an, dnz, onz);
14149566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14158c78258cSHong Zhang   for (i = 0; i < pn; i++) { /* for each local row of C */
14164222ddf1SHong Zhang     /* add C_loc into C */
1417912837bbSHong Zhang     nzi  = c_loc->i[i + 1] - c_loc->i[i];
1418912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14199566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1420912837bbSHong Zhang 
1421912837bbSHong Zhang     /* add received col data into lnk */
1422912837bbSHong Zhang     for (k = 0; k < nrecv; k++) { /* k-th received message */
1423912837bbSHong Zhang       if (i == *nextrow[k]) {     /* i-th row */
1424912837bbSHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1425912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14269566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14279371c9d4SSatish Balay         nextrow[k]++;
14289371c9d4SSatish Balay         nextci[k]++;
1429912837bbSHong Zhang       }
1430912837bbSHong Zhang     }
14318c78258cSHong Zhang 
14328c78258cSHong Zhang     /* add missing diagonal entry */
14338c78258cSHong Zhang     if (C->force_diagonals) {
14348c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14359566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14368c78258cSHong Zhang     }
14378c78258cSHong Zhang 
1438912837bbSHong Zhang     nzi = lnk[0];
1439912837bbSHong Zhang 
1440912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14419566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14429566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1443912837bbSHong Zhang   }
14449566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14459566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
14469566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1447912837bbSHong Zhang 
1448912837bbSHong Zhang   /* local sizes and preallocation */
14499566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
145058b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
145158b7e2c1SStefano Zampini   PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14529566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1453d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
1454912837bbSHong Zhang 
145569be949aSStefano Zampini   /* add C_loc and C_oth to C */
14569566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
145769be949aSStefano Zampini   for (i = 0; i < pn; i++) {
14588c78258cSHong Zhang     ncols = c_loc->i[i + 1] - c_loc->i[i];
14598c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14608c78258cSHong Zhang     row   = rstart + i;
14619566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14628c78258cSHong Zhang 
146348a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
146469be949aSStefano Zampini   }
146569be949aSStefano Zampini   for (i = 0; i < con; i++) {
14668c78258cSHong Zhang     ncols = c_oth->i[i + 1] - c_oth->i[i];
14678c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14688c78258cSHong Zhang     row   = prmap[i];
14699566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
147069be949aSStefano Zampini   }
14719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14739566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
147469be949aSStefano Zampini 
1475912837bbSHong Zhang   /* members in merge */
14769566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
14779566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
14789566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
14799566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
14809566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
14819566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
14829566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1483912837bbSHong Zhang 
14844222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
14856718818eSStefano Zampini   C->product->data    = ptap;
1486*cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
14873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1488912837bbSHong Zhang }
1489912837bbSHong Zhang 
1490d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C)
1491d71ae5a4SJacob Faibussowitsch {
14926718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data;
1493669e9c86SHong Zhang   Mat_SeqAIJ          *c_seq;
1494*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ptap;
1495669e9c86SHong Zhang   Mat                  A_loc, C_loc, C_oth;
1496912837bbSHong Zhang   PetscInt             i, rstart, rend, cm, ncols, row;
1497912837bbSHong Zhang   const PetscInt      *cols;
1498912837bbSHong Zhang   const PetscScalar   *vals;
1499912837bbSHong Zhang 
1500912837bbSHong Zhang   PetscFunctionBegin;
15016718818eSStefano Zampini   MatCheckProduct(C, 3);
1502*cc1eb50dSBarry Smith   ptap = (MatProductCtx_APMPI *)C->product->data;
150328b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
150428b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15059566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1506912837bbSHong Zhang 
1507669e9c86SHong Zhang   /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1508669e9c86SHong Zhang   /* 1) get R = Pd^T, Ro = Po^T */
15091cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1510acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15111cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1512acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1513669e9c86SHong Zhang 
1514669e9c86SHong Zhang   /* 2) compute numeric A_loc */
15159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1516912837bbSHong Zhang 
1517669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15184ede91e3SHong Zhang   A_loc = ptap->A_loc;
1519f4f49eeaSPierre Jolivet   PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc));
1520f4f49eeaSPierre Jolivet   PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth));
1521912837bbSHong Zhang   C_loc = ptap->C_loc;
1522912837bbSHong Zhang   C_oth = ptap->C_oth;
1523912837bbSHong Zhang 
152469be949aSStefano Zampini   /* add C_loc and C_oth to C */
15259566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1526912837bbSHong Zhang 
1527912837bbSHong Zhang   /* C_loc -> C */
1528912837bbSHong Zhang   cm    = C_loc->rmap->N;
1529912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_loc->data;
1530912837bbSHong Zhang   cols  = c_seq->j;
1531912837bbSHong Zhang   vals  = c_seq->a;
1532912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1533912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1534912837bbSHong Zhang     row   = rstart + i;
15359566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15369371c9d4SSatish Balay     cols += ncols;
15379371c9d4SSatish Balay     vals += ncols;
1538912837bbSHong Zhang   }
1539912837bbSHong Zhang 
1540912837bbSHong Zhang   /* Co -> C, off-processor part */
1541912837bbSHong Zhang   cm    = C_oth->rmap->N;
1542912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_oth->data;
1543912837bbSHong Zhang   cols  = c_seq->j;
1544912837bbSHong Zhang   vals  = c_seq->a;
1545912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1546912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1547912837bbSHong Zhang     row   = p->garray[i];
15489566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15499371c9d4SSatish Balay     cols += ncols;
15509371c9d4SSatish Balay     vals += ncols;
1551912837bbSHong Zhang   }
15529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15539566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15549566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
15553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1556912837bbSHong Zhang }
1557912837bbSHong Zhang 
1558d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C)
1559d71ae5a4SJacob Faibussowitsch {
1560*cc1eb50dSBarry Smith   MatMergeSeqsToMPI   *merge;
15616718818eSStefano Zampini   Mat_MPIAIJ          *p  = (Mat_MPIAIJ *)P->data;
1562f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data;
1563*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ap;
1564e745005bSHong Zhang   PetscInt            *adj;
1565e745005bSHong Zhang   PetscInt             i, j, k, anz, pnz, row, *cj, nexta;
1566e745005bSHong Zhang   MatScalar           *ada, *ca, valtmp;
1567d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1568ce94432eSBarry Smith   MPI_Comm             comm;
15696497c311SBarry Smith   PetscMPIInt          size, rank, taga, *len_s, proc;
15706497c311SBarry Smith   PetscInt            *owners, nrows, **buf_ri_k, **nextrow, **nextci;
1571d6ab1dc0SHong Zhang   PetscInt           **buf_ri, **buf_rj;
1572d6ab1dc0SHong Zhang   PetscInt             cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1573d6ab1dc0SHong Zhang   MPI_Request         *s_waits, *r_waits;
1574d6ab1dc0SHong Zhang   MPI_Status          *status;
1575d6ab1dc0SHong Zhang   MatScalar          **abuf_r, *ba_i, *pA, *coa, *ba;
1576ce496241SStefano Zampini   const PetscScalar   *dummy;
15774e201bd7SHong Zhang   PetscInt            *ai, *aj, *coi, *coj, *poJ, *pdJ;
1578d6ab1dc0SHong Zhang   Mat                  A_loc;
1579d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1580d6ab1dc0SHong Zhang 
1581d6ab1dc0SHong Zhang   PetscFunctionBegin;
15826718818eSStefano Zampini   MatCheckProduct(C, 3);
1583*cc1eb50dSBarry Smith   ap = (MatProductCtx_APMPI *)C->product->data;
15841cdffd5eSHong Zhang   PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
15851cdffd5eSHong Zhang   PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
15879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
15889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1589d6ab1dc0SHong Zhang 
15901cdffd5eSHong Zhang   merge = ap->merge;
1591d6ab1dc0SHong Zhang 
1592e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1593d6ab1dc0SHong Zhang   /* get data from symbolic products */
15949371c9d4SSatish Balay   coi = merge->coi;
15959371c9d4SSatish Balay   coj = merge->coj;
159684648c2dSPierre Jolivet   PetscCall(PetscCalloc1(coi[pon], &coa));
15979371c9d4SSatish Balay   bi     = merge->bi;
15989371c9d4SSatish Balay   bj     = merge->bj;
1599d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
160084648c2dSPierre Jolivet   PetscCall(PetscCalloc1(bi[cm], &ba));
1601d6ab1dc0SHong Zhang 
1602d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
16031cdffd5eSHong Zhang   A_loc = ap->A_loc;
16049566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
160557508eceSPierre Jolivet   a_loc = (Mat_SeqAIJ *)A_loc->data;
1606d6ab1dc0SHong Zhang   ai    = a_loc->i;
1607d6ab1dc0SHong Zhang   aj    = a_loc->j;
1608d6ab1dc0SHong Zhang 
1609ce496241SStefano Zampini   /* trigger copy to CPU */
16109566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16119566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16129566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16139566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1614d6ab1dc0SHong Zhang   for (i = 0; i < am; i++) {
1615d6ab1dc0SHong Zhang     anz = ai[i + 1] - ai[i];
1616d6ab1dc0SHong Zhang     adj = aj + ai[i];
1617d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1618d6ab1dc0SHong Zhang 
1619d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1620d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1621d6ab1dc0SHong Zhang     pnz = po->i[i + 1] - po->i[i];
1622d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1623d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1624d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1625d6ab1dc0SHong Zhang       row = poJ[j];
1626d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1627d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1628e745005bSHong Zhang       /* perform sparse axpy */
1629e745005bSHong Zhang       nexta  = 0;
1630d6ab1dc0SHong Zhang       valtmp = pA[j];
1631e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1632e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1633e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1634e745005bSHong Zhang           nexta++;
1635d6ab1dc0SHong Zhang         }
1636e745005bSHong Zhang       }
16379566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1638d6ab1dc0SHong Zhang     }
1639d6ab1dc0SHong Zhang 
1640d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1641d6ab1dc0SHong Zhang     pnz = pd->i[i + 1] - pd->i[i];
1642d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1643d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1644d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1645d6ab1dc0SHong Zhang       row = pdJ[j];
1646d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1647d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1648e745005bSHong Zhang       /* perform sparse axpy */
1649e745005bSHong Zhang       nexta  = 0;
1650d6ab1dc0SHong Zhang       valtmp = pA[j];
1651e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1652e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1653e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1654e745005bSHong Zhang           nexta++;
1655d6ab1dc0SHong Zhang         }
1656e745005bSHong Zhang       }
16579566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1658d6ab1dc0SHong Zhang     }
1659d6ab1dc0SHong Zhang   }
1660d6ab1dc0SHong Zhang 
1661d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1662d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1663d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1664d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16659566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &taga));
16669566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1667d6ab1dc0SHong Zhang 
166884648c2dSPierre Jolivet   PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status));
1669d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1670d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1671d6ab1dc0SHong Zhang     i = merge->owners_co[proc];
16726497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1673d6ab1dc0SHong Zhang     k++;
1674d6ab1dc0SHong Zhang   }
16759566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
16769566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1677d6ab1dc0SHong Zhang 
16789566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits, status));
16799566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
16809566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1681d6ab1dc0SHong Zhang 
1682d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
16839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1684d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1685e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1686f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
1687d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1688a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1689d6ab1dc0SHong Zhang   }
1690d6ab1dc0SHong Zhang 
1691d6ab1dc0SHong Zhang   for (i = 0; i < cm; i++) {
1692d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1693d6ab1dc0SHong Zhang     bj_i = bj + bi[i];       /* col indices of the i-th row of C */
1694d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1695d6ab1dc0SHong Zhang     bnz  = bi[i + 1] - bi[i];
1696d6ab1dc0SHong Zhang     /* add received vals into ba */
1697d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1698d6ab1dc0SHong Zhang       /* i-th row */
1699d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1700d6ab1dc0SHong Zhang         cnz    = *(nextci[k] + 1) - *nextci[k];
1701f4f49eeaSPierre Jolivet         cj     = buf_rj[k] + *nextci[k];
1702f4f49eeaSPierre Jolivet         ca     = abuf_r[k] + *nextci[k];
1703d6ab1dc0SHong Zhang         nextcj = 0;
1704d6ab1dc0SHong Zhang         for (j = 0; nextcj < cnz; j++) {
1705d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1706d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1707d6ab1dc0SHong Zhang           }
1708d6ab1dc0SHong Zhang         }
17099371c9d4SSatish Balay         nextrow[k]++;
17109371c9d4SSatish Balay         nextci[k]++;
17119566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * cnz));
1712d6ab1dc0SHong Zhang       }
1713d6ab1dc0SHong Zhang     }
17149566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1715d6ab1dc0SHong Zhang   }
17169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17179566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1718d6ab1dc0SHong Zhang 
17199566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17209566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17219566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17229566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
17233ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1724d6ab1dc0SHong Zhang }
1725d6ab1dc0SHong Zhang 
1726d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C)
1727d71ae5a4SJacob Faibussowitsch {
1728b419842dSStefano Zampini   Mat                  A_loc;
1729*cc1eb50dSBarry Smith   MatProductCtx_APMPI *ap;
17300298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
17316718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1732d6ab1dc0SHong Zhang   PetscInt            *pdti, *pdtj, *poti, *potj, *ptJ;
1733d6ab1dc0SHong Zhang   PetscInt             nnz;
1734d6ab1dc0SHong Zhang   PetscInt            *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1735d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, pn = P->cmap->n;
1736ce94432eSBarry Smith   MPI_Comm             comm;
17376497c311SBarry Smith   PetscMPIInt          size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc;
1738d6ab1dc0SHong Zhang   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
17396497c311SBarry Smith   PetscInt             len, *dnz, *onz, *owners;
1740d6ab1dc0SHong Zhang   PetscInt             nzi, *bi, *bj;
1741d6ab1dc0SHong Zhang   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1742d6ab1dc0SHong Zhang   MPI_Request         *swaits, *rwaits;
1743d6ab1dc0SHong Zhang   MPI_Status          *sstatus, rstatus;
1744*cc1eb50dSBarry Smith   MatMergeSeqsToMPI   *merge;
1745d6ab1dc0SHong Zhang   PetscInt            *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1746d6ab1dc0SHong Zhang   PetscReal            afill  = 1.0, afill_tmp;
1747eec179cfSJacob Faibussowitsch   PetscInt             rstart = P->cmap->rstart, rmax, Armax;
1748b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
1749eec179cfSJacob Faibussowitsch   PetscHMapI           ta;
1750b92f168fSBarry Smith   MatType              mtype;
1751d6ab1dc0SHong Zhang 
1752d6ab1dc0SHong Zhang   PetscFunctionBegin;
17539566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1754d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17559371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17569371c9d4SSatish Balay              A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1757d6ab1dc0SHong Zhang 
17589566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1760d6ab1dc0SHong Zhang 
1761*cc1eb50dSBarry Smith   /* create struct MatProductCtx_APMPI and attached it to C later */
17621cdffd5eSHong Zhang   PetscCall(PetscNew(&ap));
1763d6ab1dc0SHong Zhang 
1764d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17659566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17662205254eSKarl Rupp 
17671cdffd5eSHong Zhang   ap->A_loc = A_loc;
176857508eceSPierre Jolivet   a_loc     = (Mat_SeqAIJ *)A_loc->data;
1769d6ab1dc0SHong Zhang   ai        = a_loc->i;
1770d6ab1dc0SHong Zhang   aj        = a_loc->j;
1771d6ab1dc0SHong Zhang 
1772d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
17739566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
17749566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1775d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1776d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
17779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon + 1, &coi));
1778d6ab1dc0SHong Zhang   coi[0] = 0;
1779d6ab1dc0SHong Zhang 
1780d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1781f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
17829566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1783d6ab1dc0SHong Zhang   current_space = free_space;
178419f0e57aSHong Zhang 
1785d6ab1dc0SHong Zhang   /* create and initialize a linked list */
1786eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta));
17874b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, am, ta);
1788eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
178933ba5e2fSHong Zhang 
17909566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1791d6ab1dc0SHong Zhang 
1792d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1793d6ab1dc0SHong Zhang     pnz = poti[i + 1] - poti[i];
1794d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1795d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1796d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1797d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1798d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1799d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18009566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1801d6ab1dc0SHong Zhang     }
1802d6ab1dc0SHong Zhang     nnz = lnk[0];
1803d6ab1dc0SHong Zhang 
1804d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1805d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
18069566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1807d6ab1dc0SHong Zhang       nspacedouble++;
1808d6ab1dc0SHong Zhang     }
1809d6ab1dc0SHong Zhang 
1810d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18119566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18122205254eSKarl Rupp 
1813d6ab1dc0SHong Zhang     current_space->array += nnz;
1814d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1815d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18162205254eSKarl Rupp 
1817d6ab1dc0SHong Zhang     coi[i + 1] = coi[i] + nnz;
1818d6ab1dc0SHong Zhang   }
1819d6ab1dc0SHong Zhang 
182084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(coi[pon], &coj));
18219566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18229566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18232205254eSKarl Rupp 
1824118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1825d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1826d6ab1dc0SHong Zhang 
1827d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1828d6ab1dc0SHong Zhang   /* determine row ownership */
18299566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18309566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18312205254eSKarl Rupp 
1832d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1833d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18342205254eSKarl Rupp 
18359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1836d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1837d6ab1dc0SHong Zhang 
1838d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &len_si));
18409566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &merge->len_s));
18412205254eSKarl Rupp 
1842d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1843d6ab1dc0SHong Zhang   merge->nsend = 0;
1844d6ab1dc0SHong Zhang 
184584648c2dSPierre Jolivet   PetscCall(PetscMalloc1(size + 1, &owners_co));
1846d6ab1dc0SHong Zhang 
1847d6ab1dc0SHong Zhang   proc = 0;
1848d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1849d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
1850d6ab1dc0SHong Zhang     len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1851d6ab1dc0SHong Zhang     len_s[proc] += coi[i + 1] - coi[i];
1852d6ab1dc0SHong Zhang   }
1853d6ab1dc0SHong Zhang 
1854d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1855d6ab1dc0SHong Zhang   owners_co[0] = 0;
1856d6ab1dc0SHong Zhang   for (proc = 0; proc < size; proc++) {
1857d6ab1dc0SHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1858216f1e5cSPierre Jolivet     if (len_s[proc]) {
1859d6ab1dc0SHong Zhang       merge->nsend++;
1860d6ab1dc0SHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1);
1861d6ab1dc0SHong Zhang       len += len_si[proc];
1862d6ab1dc0SHong Zhang     }
1863d6ab1dc0SHong Zhang   }
1864d6ab1dc0SHong Zhang 
1865d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18669566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18679566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1868d6ab1dc0SHong Zhang 
1869d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
18709566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
18719566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
187284648c2dSPierre Jolivet   PetscCall(PetscMalloc1(merge->nsend, &swaits));
1873d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1874d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1875d6ab1dc0SHong Zhang     i = owners_co[proc];
18766497c311SBarry Smith     PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1877d6ab1dc0SHong Zhang     k++;
1878d6ab1dc0SHong Zhang   }
1879d6ab1dc0SHong Zhang 
1880d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
18819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &sstatus));
1882d6ab1dc0SHong Zhang   for (i = 0; i < merge->nrecv; i++) {
1883ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
18849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1885d6ab1dc0SHong Zhang   }
18869566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
18879566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1888d6ab1dc0SHong Zhang 
18890acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1890c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
18910acc65b4SHong Zhang   for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
18920acc65b4SHong Zhang     Jptr = buf_rj[k];
1893c76ffc5fSJacob Faibussowitsch     for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
18940acc65b4SHong Zhang   }
1895eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
18960acc65b4SHong Zhang 
1897d6ab1dc0SHong Zhang   /* send and recv coi */
18989566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
18999566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
190084648c2dSPierre Jolivet   PetscCall(PetscMalloc1(len, &buf_s));
1901d6ab1dc0SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1902d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1903d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1904d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1905d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1906d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1907d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1908d6ab1dc0SHong Zhang     */
1909d6ab1dc0SHong Zhang     nrows       = len_si[proc] / 2 - 1;
1910d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows + 1;
1911d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1912d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1913d6ab1dc0SHong Zhang     nrows       = 0;
1914d6ab1dc0SHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1915d6ab1dc0SHong Zhang       nzi                 = coi[i + 1] - coi[i];
1916d6ab1dc0SHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1917d6ab1dc0SHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1918d6ab1dc0SHong Zhang       nrows++;
1919d6ab1dc0SHong Zhang     }
19206497c311SBarry Smith     PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1921d6ab1dc0SHong Zhang     k++;
1922d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1923d6ab1dc0SHong Zhang   }
1924d6ab1dc0SHong Zhang   i = merge->nrecv;
1925d6ab1dc0SHong Zhang   while (i--) {
1926ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19279566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1928d6ab1dc0SHong Zhang   }
19299566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19309566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19319566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19329566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19339566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19349566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19359566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1936d6ab1dc0SHong Zhang 
1937d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1938d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn + 1, &bi));
1940d6ab1dc0SHong Zhang   bi[0] = 0;
1941d6ab1dc0SHong Zhang 
1942d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1943f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19449566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1945d6ab1dc0SHong Zhang   current_space = free_space;
1946d6ab1dc0SHong Zhang 
19479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1948d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1949d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1950d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1951d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
19522d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1953d6ab1dc0SHong Zhang   }
1954d6ab1dc0SHong Zhang 
19559566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1956d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1957d6ab1dc0SHong Zhang   rmax = 0;
1958d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
1959d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1960d6ab1dc0SHong Zhang     pnz = pdti[i + 1] - pdti[i];
1961d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1962d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1963d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of AP == col of Pt */
1964d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1965d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1966d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
19679566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1968d6ab1dc0SHong Zhang     }
1969d6ab1dc0SHong Zhang 
1970d6ab1dc0SHong Zhang     /* add received col data into lnk */
1971d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1972d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
1973d6ab1dc0SHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1974d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
19759566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
19769371c9d4SSatish Balay         nextrow[k]++;
19779371c9d4SSatish Balay         nextci[k]++;
1978d6ab1dc0SHong Zhang       }
1979d6ab1dc0SHong Zhang     }
19808c78258cSHong Zhang 
19818c78258cSHong Zhang     /* add missing diagonal entry */
19828c78258cSHong Zhang     if (C->force_diagonals) {
19838c78258cSHong Zhang       k = i + owners[rank]; /* column index */
19849566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
19858c78258cSHong Zhang     }
19868c78258cSHong Zhang 
1987d6ab1dc0SHong Zhang     nnz = lnk[0];
1988d6ab1dc0SHong Zhang 
1989d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
1990d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
19919566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1992d6ab1dc0SHong Zhang       nspacedouble++;
1993d6ab1dc0SHong Zhang     }
1994d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
19959566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
19969566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
19972205254eSKarl Rupp 
1998d6ab1dc0SHong Zhang     current_space->array += nnz;
1999d6ab1dc0SHong Zhang     current_space->local_used += nnz;
2000d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20012205254eSKarl Rupp 
2002d6ab1dc0SHong Zhang     bi[i + 1] = bi[i] + nnz;
2003d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2004d6ab1dc0SHong Zhang   }
20059566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2006d6ab1dc0SHong Zhang 
200784648c2dSPierre Jolivet   PetscCall(PetscMalloc1(bi[pn], &bj));
20089566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2009118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2010d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20119566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
2012eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
20139566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20149566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2015d6ab1dc0SHong Zhang 
20164222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20179566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
201858b7e2c1SStefano Zampini   PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs));
20199566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
20209566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
20219566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2022d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
20239566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C, 1));
20249566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2025d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
2026d6ab1dc0SHong Zhang     row  = i + rstart;
2027d6ab1dc0SHong Zhang     nnz  = bi[i + 1] - bi[i];
2028d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20299566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2030d6ab1dc0SHong Zhang   }
20319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20339566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2034d6ab1dc0SHong Zhang   merge->bi        = bi;
2035d6ab1dc0SHong Zhang   merge->bj        = bj;
2036d6ab1dc0SHong Zhang   merge->coi       = coi;
2037d6ab1dc0SHong Zhang   merge->coj       = coj;
2038d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2039d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2040d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2041d6ab1dc0SHong Zhang 
20424222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20431cdffd5eSHong Zhang   C->product->data    = ap;
2044*cc1eb50dSBarry Smith   C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
20451cdffd5eSHong Zhang   ap->merge           = merge;
2046a560ef98SHong Zhang 
20474222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2048f96d37fcSHong Zhang 
2049f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2050f96d37fcSHong Zhang   if (bi[pn] != 0) {
20519566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20529566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2053f96d37fcSHong Zhang   } else {
20549566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
2055f96d37fcSHong Zhang   }
2056f96d37fcSHong Zhang #endif
20573ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2058f96d37fcSHong Zhang }
20594222ddf1SHong Zhang 
2060d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
2061d71ae5a4SJacob Faibussowitsch {
20624222ddf1SHong Zhang   Mat_Product *product = C->product;
20634222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
20644222ddf1SHong Zhang   PetscReal    fill = product->fill;
20654222ddf1SHong Zhang   PetscBool    flg;
20664222ddf1SHong Zhang 
20674222ddf1SHong Zhang   PetscFunctionBegin;
20684222ddf1SHong Zhang   /* scalable */
20699566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
20704222ddf1SHong Zhang   if (flg) {
20719566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
20724222ddf1SHong Zhang     goto next;
20734222ddf1SHong Zhang   }
20744222ddf1SHong Zhang 
20754222ddf1SHong Zhang   /* nonscalable */
20769566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
20774222ddf1SHong Zhang   if (flg) {
20789566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
20794222ddf1SHong Zhang     goto next;
20804222ddf1SHong Zhang   }
20814222ddf1SHong Zhang 
20824222ddf1SHong Zhang   /* matmatmult */
20839566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
20844222ddf1SHong Zhang   if (flg) {
20854222ddf1SHong Zhang     Mat                  At;
2086*cc1eb50dSBarry Smith     MatProductCtx_APMPI *ptap;
20874222ddf1SHong Zhang 
20889566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
20899566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
2090*cc1eb50dSBarry Smith     ptap = (MatProductCtx_APMPI *)C->product->data;
20914222ddf1SHong Zhang     if (ptap) {
20924222ddf1SHong Zhang       ptap->Pt            = At;
2093*cc1eb50dSBarry Smith       C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP;
20944222ddf1SHong Zhang     }
20954222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
20964222ddf1SHong Zhang     goto next;
20974222ddf1SHong Zhang   }
20984222ddf1SHong Zhang 
20994e84afc0SStefano Zampini   /* backend general code */
21009566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "backend", &flg));
21014e84afc0SStefano Zampini   if (flg) {
21029566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21033ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
21044e84afc0SStefano Zampini   }
21054e84afc0SStefano Zampini 
21064222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21074222ddf1SHong Zhang 
21084222ddf1SHong Zhang next:
21094222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21114222ddf1SHong Zhang }
21124222ddf1SHong Zhang 
21134222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
2114d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
2115d71ae5a4SJacob Faibussowitsch {
21164222ddf1SHong Zhang   Mat_Product *product = C->product;
21174222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21184222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21194e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21204e84afc0SStefano Zampini   PetscInt    nalg        = 5;
21214222ddf1SHong Zhang #else
21229371c9d4SSatish Balay   const char *algTypes[4] = {
21239371c9d4SSatish Balay     "scalable",
21249371c9d4SSatish Balay     "nonscalable",
21259371c9d4SSatish Balay     "seqmpi",
21269371c9d4SSatish Balay     "backend",
21279371c9d4SSatish Balay   };
21284e84afc0SStefano Zampini   PetscInt nalg = 4;
21294222ddf1SHong Zhang #endif
21304222ddf1SHong Zhang   PetscInt  alg = 1; /* set nonscalable algorithm as default */
21314222ddf1SHong Zhang   PetscBool flg;
21324222ddf1SHong Zhang   MPI_Comm  comm;
21334222ddf1SHong Zhang 
21344222ddf1SHong Zhang   PetscFunctionBegin;
21359566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21364222ddf1SHong Zhang 
21374222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21389566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21394222ddf1SHong Zhang   if (flg) {
2140835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21414222ddf1SHong Zhang 
21424222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21434222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21444222ddf1SHong Zhang       MatInfo   Ainfo, Binfo;
21454222ddf1SHong Zhang       PetscInt  nz_local;
21464222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21474222ddf1SHong Zhang 
21489566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21499566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21504222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21514222ddf1SHong Zhang 
21524222ddf1SHong Zhang       if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21535440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
21544222ddf1SHong Zhang 
21554222ddf1SHong Zhang       if (alg_scalable) {
21564222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2157835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21589566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21594222ddf1SHong Zhang       }
21604222ddf1SHong Zhang     }
21614222ddf1SHong Zhang   }
21624222ddf1SHong Zhang 
21634222ddf1SHong Zhang   /* Get runtime option */
21644222ddf1SHong Zhang   if (product->api_user) {
2165d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
21669566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2167d0609cedSBarry Smith     PetscOptionsEnd();
21684222ddf1SHong Zhang   } else {
2169d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
21709566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2171d0609cedSBarry Smith     PetscOptionsEnd();
21724222ddf1SHong Zhang   }
2173835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
21744222ddf1SHong Zhang 
21754222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
21763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21774222ddf1SHong Zhang }
21784222ddf1SHong Zhang 
2179d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2180d71ae5a4SJacob Faibussowitsch {
21818a9c020eSBarry Smith   PetscFunctionBegin;
21828a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
21838a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
21843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21858a9c020eSBarry Smith }
21868a9c020eSBarry Smith 
21874222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
2188d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
2189d71ae5a4SJacob Faibussowitsch {
21904222ddf1SHong Zhang   Mat_Product *product = C->product;
21914222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21924e84afc0SStefano Zampini   const char  *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
21934e84afc0SStefano Zampini   PetscInt     nalg        = 4;
21944222ddf1SHong Zhang   PetscInt     alg         = 1; /* set default algorithm  */
21954222ddf1SHong Zhang   PetscBool    flg;
21964222ddf1SHong Zhang   MPI_Comm     comm;
21974222ddf1SHong Zhang 
21984222ddf1SHong Zhang   PetscFunctionBegin;
21994222ddf1SHong Zhang   /* Check matrix local sizes */
22009566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22019371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22029371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22034222ddf1SHong Zhang 
22044222ddf1SHong Zhang   /* Set default algorithm */
22059566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2206835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22074222ddf1SHong Zhang 
22084222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22094222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22104222ddf1SHong Zhang     MatInfo   Ainfo, Binfo;
22114222ddf1SHong Zhang     PetscInt  nz_local;
22124222ddf1SHong Zhang     PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22134222ddf1SHong Zhang 
22149566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22159566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22164222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22174222ddf1SHong Zhang 
22184222ddf1SHong Zhang     if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22195440e5dcSBarry Smith     PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22204222ddf1SHong Zhang 
22214222ddf1SHong Zhang     if (alg_scalable) {
22224222ddf1SHong Zhang       alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2223835f2295SStefano Zampini       PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22249566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22254222ddf1SHong Zhang     }
22264222ddf1SHong Zhang   }
22274222ddf1SHong Zhang 
22284222ddf1SHong Zhang   /* Get runtime option */
22294222ddf1SHong Zhang   if (product->api_user) {
2230d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22319566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2232d0609cedSBarry Smith     PetscOptionsEnd();
22334222ddf1SHong Zhang   } else {
2234d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22359566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2236d0609cedSBarry Smith     PetscOptionsEnd();
22374222ddf1SHong Zhang   }
2238835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22394222ddf1SHong Zhang 
22404222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22424222ddf1SHong Zhang }
22434222ddf1SHong Zhang 
2244d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
2245d71ae5a4SJacob Faibussowitsch {
22464222ddf1SHong Zhang   Mat_Product *product = C->product;
22474222ddf1SHong Zhang   Mat          A = product->A, P = product->B;
22484222ddf1SHong Zhang   MPI_Comm     comm;
22494222ddf1SHong Zhang   PetscBool    flg;
22504222ddf1SHong Zhang   PetscInt     alg = 1; /* set default algorithm */
22514222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22524e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22534222ddf1SHong Zhang   PetscInt    nalg        = 5;
22544e84afc0SStefano Zampini #else
22554e84afc0SStefano Zampini   const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22564e84afc0SStefano Zampini   PetscInt    nalg        = 6;
22574222ddf1SHong Zhang #endif
22584222ddf1SHong Zhang   PetscInt pN = P->cmap->N;
22594222ddf1SHong Zhang 
22604222ddf1SHong Zhang   PetscFunctionBegin;
22614222ddf1SHong Zhang   /* Check matrix local sizes */
22629566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22639371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22649371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22659371c9d4SSatish Balay   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22669371c9d4SSatish Balay              A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
22674222ddf1SHong Zhang 
22684222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22699566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
22704222ddf1SHong Zhang   if (flg) {
2271835f2295SStefano Zampini     PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22724222ddf1SHong Zhang 
22734222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22744222ddf1SHong Zhang     if (pN > 100000) {
22754222ddf1SHong Zhang       MatInfo   Ainfo, Pinfo;
22764222ddf1SHong Zhang       PetscInt  nz_local;
22774222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22784222ddf1SHong Zhang 
22799566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22809566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
22814222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
22824222ddf1SHong Zhang 
22834222ddf1SHong Zhang       if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22845440e5dcSBarry Smith       PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm));
22854222ddf1SHong Zhang 
22864222ddf1SHong Zhang       if (alg_scalable) {
22874222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
2288835f2295SStefano Zampini         PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
22894222ddf1SHong Zhang       }
22904222ddf1SHong Zhang     }
22914222ddf1SHong Zhang   }
22924222ddf1SHong Zhang 
22934222ddf1SHong Zhang   /* Get runtime option */
22944222ddf1SHong Zhang   if (product->api_user) {
2295d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
22969566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2297d0609cedSBarry Smith     PetscOptionsEnd();
22984222ddf1SHong Zhang   } else {
2299d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
23009566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2301d0609cedSBarry Smith     PetscOptionsEnd();
23024222ddf1SHong Zhang   }
2303835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23044222ddf1SHong Zhang 
23054222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23063ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23074222ddf1SHong Zhang }
23084222ddf1SHong Zhang 
2309d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
2310d71ae5a4SJacob Faibussowitsch {
23114222ddf1SHong Zhang   Mat_Product *product = C->product;
23124222ddf1SHong Zhang   Mat          A = product->A, R = product->B;
23134222ddf1SHong Zhang 
23144222ddf1SHong Zhang   PetscFunctionBegin;
23154222ddf1SHong Zhang   /* Check matrix local sizes */
23169371c9d4SSatish Balay   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23179371c9d4SSatish Balay              A->rmap->n, R->rmap->n, R->cmap->n);
23184222ddf1SHong Zhang 
23194222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23214222ddf1SHong Zhang }
23224222ddf1SHong Zhang 
23234222ddf1SHong Zhang /*
23244222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23254222ddf1SHong Zhang */
2326d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
2327d71ae5a4SJacob Faibussowitsch {
23284222ddf1SHong Zhang   Mat_Product *product     = C->product;
23294222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
23304222ddf1SHong Zhang   PetscInt     alg         = 1; /* default algorithm */
23314222ddf1SHong Zhang   const char  *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23324222ddf1SHong Zhang   PetscInt     nalg        = 3;
23334222ddf1SHong Zhang 
23344222ddf1SHong Zhang   PetscFunctionBegin;
23354222ddf1SHong Zhang   /* Set default algorithm */
23369566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
2337835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23384222ddf1SHong Zhang 
23394222ddf1SHong Zhang   /* Get runtime option */
23404222ddf1SHong Zhang   if (product->api_user) {
2341d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23429566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2343d0609cedSBarry Smith     PetscOptionsEnd();
23444222ddf1SHong Zhang   } else {
2345d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23469566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2347d0609cedSBarry Smith     PetscOptionsEnd();
23484222ddf1SHong Zhang   }
2349835f2295SStefano Zampini   if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg]));
23504222ddf1SHong Zhang 
23514222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23524222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23544222ddf1SHong Zhang }
23554222ddf1SHong Zhang 
2356d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
2357d71ae5a4SJacob Faibussowitsch {
23584222ddf1SHong Zhang   Mat_Product *product = C->product;
23594222ddf1SHong Zhang 
23604222ddf1SHong Zhang   PetscFunctionBegin;
23614222ddf1SHong Zhang   switch (product->type) {
2362d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2363d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2364d71ae5a4SJacob Faibussowitsch     break;
2365d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2366d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2367d71ae5a4SJacob Faibussowitsch     break;
2368d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2369d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
2370d71ae5a4SJacob Faibussowitsch     break;
2371d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_PtAP:
2372d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
2373d71ae5a4SJacob Faibussowitsch     break;
2374d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_RARt:
2375d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
2376d71ae5a4SJacob Faibussowitsch     break;
2377d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABC:
2378d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
2379d71ae5a4SJacob Faibussowitsch     break;
2380d71ae5a4SJacob Faibussowitsch   default:
2381d71ae5a4SJacob Faibussowitsch     break;
23824222ddf1SHong Zhang   }
23833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23844222ddf1SHong Zhang }
2385