xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision da7cbbe728b5c30a343cfb00dfec59604afdf352)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
11af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
123515ee7fSJunchao Zhang #include <petsc/private/vecscatterimpl.h>
131634b032SHong Zhang 
145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat,Mat,PetscReal,Mat);
165e5acdf2Sstefano_zampini #endif
175e5acdf2Sstefano_zampini 
184222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
192499ec78SHong Zhang {
202499ec78SHong Zhang   PetscErrorCode      ierr;
214222ddf1SHong Zhang   Mat_Product         *product = C->product;
224222ddf1SHong Zhang   Mat                 A=product->A,B=product->B;
234222ddf1SHong Zhang   MatProductAlgorithm alg=product->alg;
244222ddf1SHong Zhang   PetscReal           fill=product->fill;
255e68f438SHong Zhang   PetscBool           flg;
262499ec78SHong Zhang 
272499ec78SHong Zhang   PetscFunctionBegin;
284222ddf1SHong Zhang   /* scalable */
294222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"scalable",&flg);CHKERRQ(ierr);
304222ddf1SHong Zhang   if (flg) {
31b2405163SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);
326718818eSStefano Zampini     PetscFunctionReturn(0);
330fc8cf34SHong Zhang   }
347d0a89b7SHong Zhang 
354222ddf1SHong Zhang   /* nonscalable */
364222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"nonscalable",&flg);CHKERRQ(ierr);
374222ddf1SHong Zhang   if (flg) {
384222ddf1SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C);CHKERRQ(ierr);
396718818eSStefano Zampini     PetscFunctionReturn(0);
404222ddf1SHong Zhang   }
414222ddf1SHong Zhang 
424222ddf1SHong Zhang   /* seqmpi */
434222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"seqmpi",&flg);CHKERRQ(ierr);
444222ddf1SHong Zhang   if (flg) {
454222ddf1SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A,B,fill,C);CHKERRQ(ierr);
466718818eSStefano Zampini     PetscFunctionReturn(0);
474222ddf1SHong Zhang   }
484222ddf1SHong Zhang 
494222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
504222ddf1SHong Zhang   ierr = PetscStrcmp(alg,"hypre",&flg);CHKERRQ(ierr);
514222ddf1SHong Zhang   if (flg) {
524222ddf1SHong Zhang     ierr = MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A,B,fill,C);CHKERRQ(ierr);
534222ddf1SHong Zhang     PetscFunctionReturn(0);
544222ddf1SHong Zhang   }
554222ddf1SHong Zhang #endif
564222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_SUP,"Mat Product Algorithm is not supported");
572499ec78SHong Zhang }
582499ec78SHong Zhang 
596718818eSStefano Zampini PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
60598bc09dSHong Zhang {
61598bc09dSHong Zhang   PetscErrorCode ierr;
626718818eSStefano Zampini   Mat_APMPI      *ptap = (Mat_APMPI*)data;
63598bc09dSHong Zhang 
64598bc09dSHong Zhang   PetscFunctionBegin;
65b7f45c76SHong Zhang   ierr = PetscFree2(ptap->startsj_s,ptap->startsj_r);CHKERRQ(ierr);
66598bc09dSHong Zhang   ierr = PetscFree(ptap->bufa);CHKERRQ(ierr);
67a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_loc);CHKERRQ(ierr);
68a1a4e84aSHong Zhang   ierr = MatDestroy(&ptap->P_oth);CHKERRQ(ierr);
69ab1b013aSHong Zhang   ierr = MatDestroy(&ptap->Pt);CHKERRQ(ierr);
70a1a4e84aSHong Zhang   ierr = PetscFree(ptap->api);CHKERRQ(ierr);
71a1a4e84aSHong Zhang   ierr = PetscFree(ptap->apj);CHKERRQ(ierr);
72598bc09dSHong Zhang   ierr = PetscFree(ptap->apa);CHKERRQ(ierr);
73598bc09dSHong Zhang   ierr = PetscFree(ptap);CHKERRQ(ierr);
74598bc09dSHong Zhang   PetscFunctionReturn(0);
75598bc09dSHong Zhang }
76598bc09dSHong Zhang 
77f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,Mat C)
78598bc09dSHong Zhang {
79598bc09dSHong Zhang   PetscErrorCode ierr;
804ae0847bSHong Zhang   Mat_MPIAIJ     *a  =(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
81598bc09dSHong Zhang   Mat_SeqAIJ     *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
82598bc09dSHong Zhang   Mat_SeqAIJ     *cd =(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
83c12557a1SHong Zhang   PetscScalar    *cda=cd->a,*coa=co->a;
84598bc09dSHong Zhang   Mat_SeqAIJ     *p_loc,*p_oth;
859ce11a7cSHong Zhang   PetscScalar    *apa,*ca;
86c12557a1SHong Zhang   PetscInt       cm =C->rmap->n;
876718818eSStefano Zampini   Mat_APMPI      *ptap;
88c12557a1SHong Zhang   PetscInt       *api,*apj,*apJ,i,k;
8929825010SHong Zhang   PetscInt       cstart=C->cmap->rstart;
90598bc09dSHong Zhang   PetscInt       cdnz,conz,k0,k1;
919467f45fSHong Zhang   MPI_Comm       comm;
929467f45fSHong Zhang   PetscMPIInt    size;
93598bc09dSHong Zhang 
94598bc09dSHong Zhang   PetscFunctionBegin;
956718818eSStefano Zampini   MatCheckProduct(C,3);
966718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
976718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
989467f45fSHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
999467f45fSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1009467f45fSHong Zhang 
1016718818eSStefano Zampini   if (!ptap->P_oth && size>1) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
10280da8df7SHong Zhang 
103a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
104598bc09dSHong Zhang   /*-----------------------------------------------------*/
105a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
106b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
107a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
108598bc09dSHong Zhang 
109598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
110598bc09dSHong Zhang   /*----------------------------------------------------------*/
111598bc09dSHong Zhang   /* get data from symbolic products */
112a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
113c12557a1SHong Zhang   p_oth = NULL;
1149467f45fSHong Zhang   if (size >1) {
1159467f45fSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
1169467f45fSHong Zhang   }
117598bc09dSHong Zhang 
118598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
119598bc09dSHong Zhang   apa = ptap->apa;
120598bc09dSHong Zhang 
12129825010SHong Zhang   api = ptap->api;
12229825010SHong Zhang   apj = ptap->apj;
123598bc09dSHong Zhang   for (i=0; i<cm; i++) {
124c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
125e497d3c8SHong Zhang     AProw_nonscalable(i,ad,ao,p_loc,p_oth,apa);
126598bc09dSHong Zhang 
127598bc09dSHong Zhang     /* set values in C */
128598bc09dSHong Zhang     apJ  = apj + api[i];
129598bc09dSHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
130598bc09dSHong Zhang     conz = co->i[i+1] - co->i[i];
131598bc09dSHong Zhang 
132910cf402Sprj-     /* 1st off-diagonal part of C */
133598bc09dSHong Zhang     ca = coa + co->i[i];
134598bc09dSHong Zhang     k  = 0;
135598bc09dSHong Zhang     for (k0=0; k0<conz; k0++) {
136598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
137598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1385cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
139598bc09dSHong Zhang     }
140598bc09dSHong Zhang 
141598bc09dSHong Zhang     /* diagonal part of C */
142598bc09dSHong Zhang     ca = cda + cd->i[i];
143598bc09dSHong Zhang     for (k1=0; k1<cdnz; k1++) {
144598bc09dSHong Zhang       ca[k1]      = apa[apJ[k]];
1455cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
146598bc09dSHong Zhang     }
147598bc09dSHong Zhang 
148910cf402Sprj-     /* 2nd off-diagonal part of C */
149598bc09dSHong Zhang     ca = coa + co->i[i];
150598bc09dSHong Zhang     for (; k0<conz; k0++) {
151598bc09dSHong Zhang       ca[k0]      = apa[apJ[k]];
1525cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
153598bc09dSHong Zhang     }
154598bc09dSHong Zhang   }
155598bc09dSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
156598bc09dSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
157598bc09dSHong Zhang   PetscFunctionReturn(0);
158598bc09dSHong Zhang }
159598bc09dSHong Zhang 
1604222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A,Mat P,PetscReal fill,Mat C)
161598bc09dSHong Zhang {
162598bc09dSHong Zhang   PetscErrorCode     ierr;
163ce94432eSBarry Smith   MPI_Comm           comm;
1649467f45fSHong Zhang   PetscMPIInt        size;
1653cdca5ebSHong Zhang   Mat_APMPI          *ptap;
1660298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
1676718818eSStefano Zampini   Mat_MPIAIJ         *a=(Mat_MPIAIJ*)A->data;
168bfcd1a73SHong Zhang   Mat_SeqAIJ         *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
1697dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
1704ae0847bSHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
171d14fa243SHong Zhang   PetscInt           *lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi;
1725cab4f04SHong Zhang   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n;
173598bc09dSHong Zhang   PetscBT            lnkbt;
174bfcd1a73SHong Zhang   PetscReal          afill;
175b92f168fSBarry Smith   MatType            mtype;
176598bc09dSHong Zhang 
177598bc09dSHong Zhang   PetscFunctionBegin;
1786718818eSStefano Zampini   MatCheckProduct(C,4);
1796718818eSStefano Zampini   if (C->product->data) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
180ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1819467f45fSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1829467f45fSHong Zhang 
1833cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
184b00a9115SJed Brown   ierr = PetscNew(&ptap);CHKERRQ(ierr);
185598bc09dSHong Zhang 
186598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
187b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
18819f0e57aSHong Zhang 
189598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
190a1a4e84aSHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
191598bc09dSHong Zhang 
192a1a4e84aSHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
193598bc09dSHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
1949467f45fSHong Zhang   if (size > 1) {
1959467f45fSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
196598bc09dSHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
19720e3dc75SHong Zhang   } else {
19820e3dc75SHong Zhang     p_oth = NULL;
19920e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
2009467f45fSHong Zhang   }
201598bc09dSHong Zhang 
202598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
203598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
204854ce69bSBarry Smith   ierr      = PetscMalloc1(am+2,&api);CHKERRQ(ierr);
205a1a4e84aSHong Zhang   ptap->api = api;
206598bc09dSHong Zhang   api[0]    = 0;
207598bc09dSHong Zhang 
2085cab4f04SHong Zhang   /* create and initialize a linked list */
2095cab4f04SHong Zhang   ierr = PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt);CHKERRQ(ierr);
210598bc09dSHong Zhang 
211bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
212f91af8c7SBarry Smith   ierr = PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space);CHKERRQ(ierr);
213598bc09dSHong Zhang   current_space = free_space;
214598bc09dSHong Zhang 
215598bc09dSHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
216598bc09dSHong Zhang   for (i=0; i<am; i++) {
217598bc09dSHong Zhang     /* diagonal portion of A */
218598bc09dSHong Zhang     nzi = adi[i+1] - adi[i];
219598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
220598bc09dSHong Zhang       row  = *adj++;
221598bc09dSHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
222598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
223598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2241fbbb359SHong Zhang       ierr = PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt);CHKERRQ(ierr);
225598bc09dSHong Zhang     }
226598bc09dSHong Zhang     /* off-diagonal portion of A */
227598bc09dSHong Zhang     nzi = aoi[i+1] - aoi[i];
228598bc09dSHong Zhang     for (j=0; j<nzi; j++) {
229598bc09dSHong Zhang       row  = *aoj++;
230598bc09dSHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
231598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2321fbbb359SHong Zhang       ierr = PetscLLCondensedAddSorted(pnz,Jptr,lnk,lnkbt);CHKERRQ(ierr);
233598bc09dSHong Zhang     }
234598bc09dSHong Zhang 
235d14fa243SHong Zhang     apnz     = lnk[0];
236598bc09dSHong Zhang     api[i+1] = api[i] + apnz;
237598bc09dSHong Zhang 
238598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
239598bc09dSHong Zhang     if (current_space->local_remaining<apnz) {
240f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
241598bc09dSHong Zhang       nspacedouble++;
242598bc09dSHong Zhang     }
243598bc09dSHong Zhang 
244598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2451fbbb359SHong Zhang     ierr = PetscLLCondensedClean(pN,apnz,current_space->array,lnk,lnkbt);CHKERRQ(ierr);
246598bc09dSHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
2472205254eSKarl Rupp 
248598bc09dSHong Zhang     current_space->array           += apnz;
249598bc09dSHong Zhang     current_space->local_used      += apnz;
250598bc09dSHong Zhang     current_space->local_remaining -= apnz;
251598bc09dSHong Zhang   }
252598bc09dSHong Zhang 
253598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
254598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
255854ce69bSBarry Smith   ierr = PetscMalloc1(api[am]+1,&ptap->apj);CHKERRQ(ierr);
256a1a4e84aSHong Zhang   apj  = ptap->apj;
257a1a4e84aSHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr);
258598bc09dSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
259598bc09dSHong Zhang 
260f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
261071fcb05SBarry Smith   ierr = PetscCalloc1(pN,&ptap->apa);CHKERRQ(ierr);
262f84c536bSHong Zhang 
2634222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2644222ddf1SHong Zhang   /*---------------------------------------------*/
2654222ddf1SHong Zhang   ierr = MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2664222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,P);CHKERRQ(ierr);
267a2f3521dSMark F. Adams 
268b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
2694222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
2704222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
2710926fe31SStefano Zampini   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
27217f75172Sandi selinger 
2734222ddf1SHong Zhang   ierr = MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api);CHKERRQ(ierr);
2744222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2754222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2760926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
277598bc09dSHong Zhang 
2784222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
2794222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
280598bc09dSHong Zhang 
2814222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
2826718818eSStefano Zampini   C->product->data    = ptap;
2836718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
284598bc09dSHong Zhang 
285bfcd1a73SHong Zhang   /* set MatInfo */
286118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
287bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
2884222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
2894222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
2904222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
291bfcd1a73SHong Zhang 
292bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
293bfcd1a73SHong Zhang   if (api[am]) {
2944222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
2954222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill);CHKERRQ(ierr);
296bfcd1a73SHong Zhang   } else {
2974222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
298bfcd1a73SHong Zhang   }
299bfcd1a73SHong Zhang #endif
300598bc09dSHong Zhang   PetscFunctionReturn(0);
301598bc09dSHong Zhang }
302598bc09dSHong Zhang 
3034222ddf1SHong Zhang /* ------------------------------------------------------- */
3046718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat,Mat,PetscReal,Mat);
3056718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat,Mat,Mat);
3066718818eSStefano Zampini 
3074222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
3089123193aSHong Zhang {
3094222ddf1SHong Zhang   Mat_Product *product = C->product;
3104222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3119123193aSHong Zhang 
3129123193aSHong Zhang   PetscFunctionBegin;
3134222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
3144222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
3154222ddf1SHong Zhang 
3164222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3174222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3189123193aSHong Zhang   PetscFunctionReturn(0);
3199123193aSHong Zhang }
3204222ddf1SHong Zhang /* -------------------------------------------------------------------- */
3214222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
3224222ddf1SHong Zhang {
3234222ddf1SHong Zhang   Mat_Product *product = C->product;
3244222ddf1SHong Zhang   Mat         A = product->A,B=product->B;
3254222ddf1SHong Zhang 
3264222ddf1SHong Zhang   PetscFunctionBegin;
3274222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
3284222ddf1SHong Zhang     SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
3294222ddf1SHong Zhang 
3304222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3314222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3324222ddf1SHong Zhang   PetscFunctionReturn(0);
3334222ddf1SHong Zhang }
3344222ddf1SHong Zhang 
3354222ddf1SHong Zhang /* --------------------------------------------------------------------- */
3364222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
3374222ddf1SHong Zhang {
3384222ddf1SHong Zhang   PetscErrorCode ierr;
3394222ddf1SHong Zhang   Mat_Product    *product = C->product;
3404222ddf1SHong Zhang 
3414222ddf1SHong Zhang   PetscFunctionBegin;
3424222ddf1SHong Zhang   switch (product->type) {
3434222ddf1SHong Zhang   case MATPRODUCT_AB:
3444222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C);CHKERRQ(ierr);
3454222ddf1SHong Zhang     break;
3464222ddf1SHong Zhang   case MATPRODUCT_AtB:
3474222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C);CHKERRQ(ierr);
3484222ddf1SHong Zhang     break;
3494222ddf1SHong Zhang   default:
3506718818eSStefano Zampini     break;
3514222ddf1SHong Zhang   }
3524222ddf1SHong Zhang   PetscFunctionReturn(0);
3534222ddf1SHong Zhang }
3544222ddf1SHong Zhang /* ------------------------------------------------------- */
3559123193aSHong Zhang 
3564324174eSBarry Smith typedef struct {
3575ea7661aSPierre Jolivet   Mat          workB,workB1;
3584324174eSBarry Smith   MPI_Request  *rwaits,*swaits;
35987753ddeSHong Zhang   PetscInt     nsends,nrecvs;
36087753ddeSHong Zhang   MPI_Datatype *stype,*rtype;
3616718818eSStefano Zampini   PetscInt     blda;
3624324174eSBarry Smith } MPIAIJ_MPIDense;
3634324174eSBarry Smith 
36496b95a6bSBarry Smith PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
3654324174eSBarry Smith {
3664324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*)ctx;
3674324174eSBarry Smith   PetscErrorCode  ierr;
36887753ddeSHong Zhang   PetscInt        i;
3694324174eSBarry Smith 
3704324174eSBarry Smith   PetscFunctionBegin;
3716bf464f9SBarry Smith   ierr = MatDestroy(&contents->workB);CHKERRQ(ierr);
37287753ddeSHong Zhang   ierr = MatDestroy(&contents->workB1);CHKERRQ(ierr);
37387753ddeSHong Zhang   for (i=0; i<contents->nsends; i++) {
37487753ddeSHong Zhang     ierr = MPI_Type_free(&contents->stype[i]);CHKERRQ(ierr);
37587753ddeSHong Zhang   }
37687753ddeSHong Zhang   for (i=0; i<contents->nrecvs; i++) {
37787753ddeSHong Zhang     ierr = MPI_Type_free(&contents->rtype[i]);CHKERRQ(ierr);
37887753ddeSHong Zhang   }
37987753ddeSHong Zhang   ierr = PetscFree4(contents->stype,contents->rtype,contents->rwaits,contents->swaits);CHKERRQ(ierr);
3804324174eSBarry Smith   ierr = PetscFree(contents);CHKERRQ(ierr);
3814324174eSBarry Smith   PetscFunctionReturn(0);
3824324174eSBarry Smith }
3834324174eSBarry Smith 
3846718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat C)
3859123193aSHong Zhang {
3869123193aSHong Zhang   PetscErrorCode  ierr;
387f32d5d43SBarry Smith   Mat_MPIAIJ      *aij=(Mat_MPIAIJ*)A->data;
3886718818eSStefano Zampini   PetscInt        nz=aij->B->cmap->n,nsends,nrecvs,i,nrows_to,j,blda,clda;
3894324174eSBarry Smith   MPIAIJ_MPIDense *contents;
3904324174eSBarry Smith   VecScatter      ctx=aij->Mvctx;
3915ea7661aSPierre Jolivet   PetscInt        Am=A->rmap->n,Bm=B->rmap->n,BN=B->cmap->N,Bbn,Bbn1,bs,nrows_from,numBb;
39287753ddeSHong Zhang   MPI_Comm        comm;
39387753ddeSHong Zhang   MPI_Datatype    type1,*stype,*rtype;
39487753ddeSHong Zhang   const PetscInt  *sindices,*sstarts,*rstarts;
39587753ddeSHong Zhang   PetscMPIInt     *disp;
3966718818eSStefano Zampini   PetscBool       cisdense;
3979123193aSHong Zhang 
3989123193aSHong Zhang   PetscFunctionBegin;
3996718818eSStefano Zampini   MatCheckProduct(C,4);
4006718818eSStefano Zampini   if (C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data not empty");
40187753ddeSHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
4025ea7661aSPierre Jolivet   ierr = PetscObjectBaseTypeCompare((PetscObject)C,MATMPIDENSE,&cisdense);CHKERRQ(ierr);
4036718818eSStefano Zampini   if (!cisdense) {
4046718818eSStefano Zampini     ierr = MatSetType(C,((PetscObject)B)->type_name);CHKERRQ(ierr);
4056718818eSStefano Zampini   }
4064222ddf1SHong Zhang   ierr = MatSetSizes(C,Am,B->cmap->n,A->rmap->N,BN);CHKERRQ(ierr);
4074222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,B);CHKERRQ(ierr);
4086718818eSStefano Zampini   ierr = MatSetUp(C);CHKERRQ(ierr);
4096718818eSStefano Zampini   ierr = MatDenseGetLDA(B,&blda);CHKERRQ(ierr);
4106718818eSStefano Zampini   ierr = MatDenseGetLDA(C,&clda);CHKERRQ(ierr);
411b00a9115SJed Brown   ierr = PetscNew(&contents);CHKERRQ(ierr);
4124324174eSBarry Smith 
41387753ddeSHong Zhang   ierr = VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL);CHKERRQ(ierr);
41487753ddeSHong Zhang   ierr = VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL);CHKERRQ(ierr);
41587753ddeSHong Zhang 
41687753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
41787753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
41887753ddeSHong Zhang   if (nz) {
41987753ddeSHong Zhang     Bbn1 = 2*Am*BN/nz;
420*da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
42187753ddeSHong Zhang   } else Bbn1 = BN;
42287753ddeSHong Zhang 
42387753ddeSHong Zhang   bs = PetscAbs(B->cmap->bs);
42487753ddeSHong Zhang   Bbn1 = Bbn1/bs *bs; /* Bbn1 is a multiple of bs */
42587753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
42687753ddeSHong Zhang   ierr = MPI_Allreduce(&Bbn1,&Bbn,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr);
42787753ddeSHong Zhang 
42887753ddeSHong Zhang   /* Enable runtime option for Bbn */
4294222ddf1SHong Zhang   ierr = PetscOptionsBegin(comm,((PetscObject)C)->prefix,"MatMatMult","Mat");CHKERRQ(ierr);
43087753ddeSHong Zhang   ierr = PetscOptionsInt("-matmatmult_Bbn","Number of columns in Bb","MatMatMult",Bbn,&Bbn,NULL);CHKERRQ(ierr);
43187753ddeSHong Zhang   ierr = PetscOptionsEnd();CHKERRQ(ierr);
4326718818eSStefano Zampini   Bbn  = PetscMin(Bbn,BN);
43387753ddeSHong Zhang 
4346718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4355ea7661aSPierre Jolivet     numBb = BN/Bbn;
4365ea7661aSPierre Jolivet     Bbn1 = BN - numBb*Bbn;
4375ea7661aSPierre Jolivet   } else numBb = 0;
43887753ddeSHong Zhang 
4395ea7661aSPierre Jolivet   if (numBb) {
4405ea7661aSPierre Jolivet     ierr = PetscInfo3(C,"use Bb, BN=%D, Bbn=%D; numBb=%D\n",BN,Bbn,numBb);CHKERRQ(ierr);
4415ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4424222ddf1SHong Zhang       ierr = PetscInfo2(C,"use Bb1, BN=%D, Bbn1=%D\n",BN,Bbn1);CHKERRQ(ierr);
44387753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
44487753ddeSHong Zhang       ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn1,NULL,&contents->workB1);CHKERRQ(ierr);
4455ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
44687753ddeSHong Zhang   }
44787753ddeSHong Zhang 
44887753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
44987753ddeSHong Zhang   ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,Bbn,NULL,&contents->workB);CHKERRQ(ierr);
45087753ddeSHong Zhang 
45187753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
45287753ddeSHong Zhang   ierr = PetscMalloc4(nsends,&stype,nrecvs,&rtype,nrecvs,&contents->rwaits,nsends,&contents->swaits);CHKERRQ(ierr);
45387753ddeSHong Zhang   contents->stype  = stype;
45487753ddeSHong Zhang   contents->nsends = nsends;
45587753ddeSHong Zhang 
45687753ddeSHong Zhang   contents->rtype  = rtype;
45787753ddeSHong Zhang   contents->nrecvs = nrecvs;
4586718818eSStefano Zampini   contents->blda   = blda;
45987753ddeSHong Zhang 
46087753ddeSHong Zhang   ierr = PetscMalloc1(Bm+1,&disp);CHKERRQ(ierr);
46187753ddeSHong Zhang   for (i=0; i<nsends; i++) {
46287753ddeSHong Zhang     nrows_to = sstarts[i+1]-sstarts[i];
46387753ddeSHong Zhang     for (j=0; j<nrows_to; j++){
46487753ddeSHong Zhang       disp[j] = sindices[sstarts[i]+j]; /* rowB to be sent */
46587753ddeSHong Zhang     }
46687753ddeSHong Zhang     ierr = MPI_Type_create_indexed_block(nrows_to,1,(const PetscMPIInt *)disp,MPIU_SCALAR,&type1);CHKERRQ(ierr);
467905b3b74SHong Zhang 
4686718818eSStefano Zampini     ierr = MPI_Type_create_resized(type1,0,blda*sizeof(PetscScalar),&stype[i]);CHKERRQ(ierr);
46987753ddeSHong Zhang     ierr = MPI_Type_commit(&stype[i]);CHKERRQ(ierr);
47087753ddeSHong Zhang     ierr = MPI_Type_free(&type1);CHKERRQ(ierr);
47187753ddeSHong Zhang   }
47287753ddeSHong Zhang 
47387753ddeSHong Zhang   for (i=0; i<nrecvs; i++) {
47487753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
47587753ddeSHong Zhang     nrows_from = rstarts[i+1]-rstarts[i];
47687753ddeSHong Zhang     disp[0] = 0;
47787753ddeSHong Zhang     ierr = MPI_Type_create_indexed_block(1, nrows_from, (const PetscMPIInt *)disp, MPIU_SCALAR, &type1);CHKERRQ(ierr);
47887753ddeSHong Zhang     ierr = MPI_Type_create_resized(type1, 0, nz*sizeof(PetscScalar), &rtype[i]);CHKERRQ(ierr);
47987753ddeSHong Zhang     ierr = MPI_Type_commit(&rtype[i]);CHKERRQ(ierr);
48087753ddeSHong Zhang     ierr = MPI_Type_free(&type1);CHKERRQ(ierr);
48187753ddeSHong Zhang   }
48287753ddeSHong Zhang 
48387753ddeSHong Zhang   ierr = PetscFree(disp);CHKERRQ(ierr);
48487753ddeSHong Zhang   ierr = VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,NULL,NULL);CHKERRQ(ierr);
48587753ddeSHong Zhang   ierr = VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,NULL,NULL);CHKERRQ(ierr);
486910cf402Sprj-   ierr = MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr);
4874222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4884222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4890926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
4906718818eSStefano Zampini 
4916718818eSStefano Zampini   C->product->data = contents;
4926718818eSStefano Zampini   C->product->destroy = MatMPIAIJ_MPIDenseDestroy;
4934222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
4949123193aSHong Zhang   PetscFunctionReturn(0);
4959123193aSHong Zhang }
4969123193aSHong Zhang 
49793aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat,const PetscBool);
498f32d5d43SBarry Smith /*
4992636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5002636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
50187753ddeSHong Zhang 
50287753ddeSHong Zhang     Input: Bbidx = 0: B = Bb
50387753ddeSHong Zhang                  = 1: B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
504f32d5d43SBarry Smith */
50587753ddeSHong Zhang PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,PetscInt Bbidx,Mat C,Mat *outworkB)
506f32d5d43SBarry Smith {
507f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ*)A->data;
508f32d5d43SBarry Smith   PetscErrorCode    ierr;
5091683a169SBarry Smith   const PetscScalar *b;
51087753ddeSHong Zhang   PetscScalar       *rvalues;
511f32d5d43SBarry Smith   VecScatter        ctx = aij->Mvctx;
51287753ddeSHong Zhang   const PetscInt    *sindices,*sstarts,*rstarts;
5133515ee7fSJunchao Zhang   const PetscMPIInt *sprocs,*rprocs;
5146718818eSStefano Zampini   PetscInt          i,nsends,nrecvs;
515f32d5d43SBarry Smith   MPI_Request       *swaits,*rwaits;
516ce94432eSBarry Smith   MPI_Comm          comm;
5176718818eSStefano Zampini   PetscMPIInt       tag=((PetscObject)ctx)->tag,ncols=B->cmap->N,nrows=aij->B->cmap->n,nsends_mpi,nrecvs_mpi;
5184324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5194324174eSBarry Smith   Mat               workB;
52087753ddeSHong Zhang   MPI_Datatype      *stype,*rtype;
5216718818eSStefano Zampini   PetscInt          blda;
522f32d5d43SBarry Smith 
523f32d5d43SBarry Smith   PetscFunctionBegin;
5246718818eSStefano Zampini   MatCheckProduct(C,4);
5256718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
5266718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
5273515ee7fSJunchao Zhang   ierr = VecScatterGetRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL/*bs*/);CHKERRQ(ierr);
52887753ddeSHong Zhang   ierr = VecScatterGetRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL/*bs*/);CHKERRQ(ierr);
5293515ee7fSJunchao Zhang   ierr = PetscMPIIntCast(nsends,&nsends_mpi);CHKERRQ(ierr);
5303515ee7fSJunchao Zhang   ierr = PetscMPIIntCast(nrecvs,&nrecvs_mpi);CHKERRQ(ierr);
53187753ddeSHong Zhang   if (Bbidx == 0) {
53287753ddeSHong Zhang     workB = *outworkB = contents->workB;
53387753ddeSHong Zhang   } else {
53487753ddeSHong Zhang     workB = *outworkB = contents->workB1;
53587753ddeSHong Zhang   }
5366718818eSStefano Zampini   if (nrows != workB->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",workB->cmap->n,nrows);
5373515ee7fSJunchao Zhang   swaits = contents->swaits;
5383515ee7fSJunchao Zhang   rwaits = contents->rwaits;
539f32d5d43SBarry Smith 
5401683a169SBarry Smith   ierr = MatDenseGetArrayRead(B,&b);CHKERRQ(ierr);
5416718818eSStefano Zampini   ierr = MatDenseGetLDA(B,&blda);CHKERRQ(ierr);
5426718818eSStefano Zampini   if (blda != contents->blda) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot reuse an input matrix with lda %D != %D",blda,contents->blda);
54387753ddeSHong Zhang   ierr = MatDenseGetArray(workB,&rvalues);CHKERRQ(ierr);
544f32d5d43SBarry Smith 
54587753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5466718818eSStefano Zampini   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
54787753ddeSHong Zhang   rtype = contents->rtype;
5483515ee7fSJunchao Zhang   for (i=0; i<nrecvs; i++) {
54987753ddeSHong Zhang     ierr = MPI_Irecv(rvalues+(rstarts[i]-rstarts[0]),ncols,rtype[i],rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr);
550f32d5d43SBarry Smith   }
551f32d5d43SBarry Smith 
55287753ddeSHong Zhang   stype = contents->stype;
5533515ee7fSJunchao Zhang   for (i=0; i<nsends; i++) {
55487753ddeSHong Zhang     ierr = MPI_Isend(b,ncols,stype[i],sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr);
555f32d5d43SBarry Smith   }
5562636ff26SBarry Smith 
5576718818eSStefano Zampini   if (nrecvs) {ierr = MPI_Waitall(nrecvs_mpi,rwaits,MPI_STATUSES_IGNORE);CHKERRQ(ierr);}
5583515ee7fSJunchao Zhang   if (nsends) {ierr = MPI_Waitall(nsends_mpi,swaits,MPI_STATUSES_IGNORE);CHKERRQ(ierr);}
559f32d5d43SBarry Smith 
56087753ddeSHong Zhang   ierr = VecScatterRestoreRemote_Private(ctx,PETSC_TRUE/*send*/,&nsends,&sstarts,&sindices,&sprocs,NULL);CHKERRQ(ierr);
56187753ddeSHong Zhang   ierr = VecScatterRestoreRemoteOrdered_Private(ctx,PETSC_FALSE/*recv*/,&nrecvs,&rstarts,NULL,&rprocs,NULL);CHKERRQ(ierr);
5621683a169SBarry Smith   ierr = MatDenseRestoreArrayRead(B,&b);CHKERRQ(ierr);
56387753ddeSHong Zhang   ierr = MatDenseRestoreArray(workB,&rvalues);CHKERRQ(ierr);
56487753ddeSHong Zhang   PetscFunctionReturn(0);
56587753ddeSHong Zhang }
566f32d5d43SBarry Smith 
5676718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C)
5689123193aSHong Zhang {
5699123193aSHong Zhang   PetscErrorCode  ierr;
570f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ*)A->data;
571f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense*)B->data;
572f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense*)C->data;
573f32d5d43SBarry Smith   Mat             workB;
57487753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5759123193aSHong Zhang 
5769123193aSHong Zhang   PetscFunctionBegin;
5776718818eSStefano Zampini   MatCheckProduct(C,3);
5786718818eSStefano Zampini   if (!C->product->data) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_PLIB,"Product data empty");
5796718818eSStefano Zampini   contents = (MPIAIJ_MPIDense*)C->product->data;
580f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5815ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
5826718818eSStefano Zampini   ierr = MatMatMult(aij->A,bdense->A,MAT_REUSE_MATRIX,PETSC_DEFAULT,&cdense->A);CHKERRQ(ierr);
5835ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
58487753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
58587753ddeSHong Zhang     ierr = MatMPIDenseScatter(A,B,0,C,&workB);CHKERRQ(ierr);
586f32d5d43SBarry Smith 
587f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
58893aa15f2SStefano Zampini     ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE);CHKERRQ(ierr);
58987753ddeSHong Zhang   } else {
5905ea7661aSPierre Jolivet     Mat      Bb,Cb;
5915ea7661aSPierre Jolivet     PetscInt BN=B->cmap->N,n=contents->workB->cmap->n,i;
592*da7cbbe7SHong Zhang     if (n <= 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Column block size %D must be positive",n);
59387753ddeSHong Zhang 
5945ea7661aSPierre Jolivet     for (i=0; i<BN; i+=n) {
5955ea7661aSPierre Jolivet       ierr = MatDenseGetSubMatrix(B,i,PetscMin(i+n,BN),&Bb);CHKERRQ(ierr);
5965ea7661aSPierre Jolivet       ierr = MatDenseGetSubMatrix(C,i,PetscMin(i+n,BN),&Cb);CHKERRQ(ierr);
59787753ddeSHong Zhang 
5985ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
5995ea7661aSPierre Jolivet       ierr = MatMPIDenseScatter(A,Bb,i+n>BN,C,&workB);CHKERRQ(ierr);
6005ea7661aSPierre Jolivet 
6015ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6025ea7661aSPierre Jolivet       cdense = (Mat_MPIDense*)Cb->data;
60393aa15f2SStefano Zampini       ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A,PETSC_TRUE);CHKERRQ(ierr);
6045ea7661aSPierre Jolivet 
6055ea7661aSPierre Jolivet       ierr = MatDenseRestoreSubMatrix(B,&Bb);CHKERRQ(ierr);
6065ea7661aSPierre Jolivet       ierr = MatDenseRestoreSubMatrix(C,&Cb);CHKERRQ(ierr);
60787753ddeSHong Zhang     }
60887753ddeSHong Zhang   }
6099123193aSHong Zhang   PetscFunctionReturn(0);
6109123193aSHong Zhang }
611cf1a0672SHong Zhang 
612f8efd71cSHong Zhang PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C)
6131634b032SHong Zhang {
6141634b032SHong Zhang   PetscErrorCode ierr;
615cf1a0672SHong Zhang   Mat_MPIAIJ     *a   = (Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data;
616cf1a0672SHong Zhang   Mat_SeqAIJ     *ad  = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data;
617cf1a0672SHong Zhang   Mat_SeqAIJ     *cd  = (Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data;
618cf1a0672SHong Zhang   PetscInt       *adi = ad->i,*adj,*aoi=ao->i,*aoj;
619cf1a0672SHong Zhang   PetscScalar    *ada,*aoa,*cda=cd->a,*coa=co->a;
620cf1a0672SHong Zhang   Mat_SeqAIJ     *p_loc,*p_oth;
621cf1a0672SHong Zhang   PetscInt       *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj;
62229825010SHong Zhang   PetscScalar    *pa_loc,*pa_oth,*pa,valtmp,*ca;
62329825010SHong Zhang   PetscInt       cm    = C->rmap->n,anz,pnz;
6246718818eSStefano Zampini   Mat_APMPI      *ptap;
62580da8df7SHong Zhang   PetscScalar    *apa_sparse;
626cf1a0672SHong Zhang   PetscInt       *api,*apj,*apJ,i,j,k,row;
62729825010SHong Zhang   PetscInt       cstart = C->cmap->rstart;
62829825010SHong Zhang   PetscInt       cdnz,conz,k0,k1,nextp;
629a7c7454dSHong Zhang   MPI_Comm       comm;
630a7c7454dSHong Zhang   PetscMPIInt    size;
6311634b032SHong Zhang 
6321634b032SHong Zhang   PetscFunctionBegin;
6336718818eSStefano Zampini   MatCheckProduct(C,3);
6346718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
6356718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
63680da8df7SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
637a7c7454dSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
6386718818eSStefano Zampini   if (!ptap->P_oth && size>1) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"AP cannot be reused. Do not call MatProductClear()");
639a7c7454dSHong Zhang 
64080da8df7SHong Zhang   apa_sparse = ptap->apa;
64180da8df7SHong Zhang 
642cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
643cf1a0672SHong Zhang   /*-----------------------------------------------------*/
644cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
645b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
646cf1a0672SHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
647cf1a0672SHong Zhang 
648cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
649cf1a0672SHong Zhang   /*----------------------------------------------------------*/
650cf1a0672SHong Zhang   /* get data from symbolic products */
651cf1a0672SHong Zhang   p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data;
652cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j; pa_loc = p_loc->a;
653a7c7454dSHong Zhang   if (size >1) {
654a7c7454dSHong Zhang     p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data;
655cf1a0672SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j; pa_oth = p_oth->a;
65620e3dc75SHong Zhang   } else {
65720e3dc75SHong Zhang     p_oth = NULL; pi_oth = NULL; pj_oth = NULL; pa_oth = NULL;
658a7c7454dSHong Zhang   }
659cf1a0672SHong Zhang 
66029825010SHong Zhang   api = ptap->api;
66129825010SHong Zhang   apj = ptap->apj;
662cf1a0672SHong Zhang   for (i=0; i<cm; i++) {
66329825010SHong Zhang     apJ = apj + api[i];
66429825010SHong Zhang 
665cf1a0672SHong Zhang     /* diagonal portion of A */
666cf1a0672SHong Zhang     anz = adi[i+1] - adi[i];
667cf1a0672SHong Zhang     adj = ad->j + adi[i];
668cf1a0672SHong Zhang     ada = ad->a + adi[i];
669cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
670cf1a0672SHong Zhang       row = adj[j];
671cf1a0672SHong Zhang       pnz = pi_loc[row+1] - pi_loc[row];
672cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
673cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
67429825010SHong Zhang       /* perform sparse axpy */
675cf1a0672SHong Zhang       valtmp = ada[j];
67629825010SHong Zhang       nextp  = 0;
67729825010SHong Zhang       for (k=0; nextp<pnz; k++) {
67829825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
67929825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
68029825010SHong Zhang         }
6811634b032SHong Zhang       }
682cf1a0672SHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
683cf1a0672SHong Zhang     }
6841634b032SHong Zhang 
685cf1a0672SHong Zhang     /* off-diagonal portion of A */
686cf1a0672SHong Zhang     anz = aoi[i+1] - aoi[i];
687cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
688cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
689cf1a0672SHong Zhang     for (j=0; j<anz; j++) {
690cf1a0672SHong Zhang       row = aoj[j];
691cf1a0672SHong Zhang       pnz = pi_oth[row+1] - pi_oth[row];
692cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
693cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
69429825010SHong Zhang       /* perform sparse axpy */
695cf1a0672SHong Zhang       valtmp = aoa[j];
69629825010SHong Zhang       nextp  = 0;
69729825010SHong Zhang       for (k=0; nextp<pnz; k++) {
69829825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
69929825010SHong Zhang           apa_sparse[k] += valtmp*pa[nextp++];
70029825010SHong Zhang         }
701cf1a0672SHong Zhang       }
702cf1a0672SHong Zhang       ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr);
703cf1a0672SHong Zhang     }
7041634b032SHong Zhang 
705cf1a0672SHong Zhang     /* set values in C */
706cf1a0672SHong Zhang     cdnz = cd->i[i+1] - cd->i[i];
707cf1a0672SHong Zhang     conz = co->i[i+1] - co->i[i];
7081634b032SHong Zhang 
709910cf402Sprj-     /* 1st off-diagonal part of C */
710cf1a0672SHong Zhang     ca = coa + co->i[i];
711cf1a0672SHong Zhang     k  = 0;
712cf1a0672SHong Zhang     for (k0=0; k0<conz; k0++) {
713cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
71429825010SHong Zhang       ca[k0]        = apa_sparse[k];
71529825010SHong Zhang       apa_sparse[k] = 0.0;
716cf1a0672SHong Zhang       k++;
717cf1a0672SHong Zhang     }
7181634b032SHong Zhang 
719cf1a0672SHong Zhang     /* diagonal part of C */
720cf1a0672SHong Zhang     ca = cda + cd->i[i];
721cf1a0672SHong Zhang     for (k1=0; k1<cdnz; k1++) {
72229825010SHong Zhang       ca[k1]        = apa_sparse[k];
72329825010SHong Zhang       apa_sparse[k] = 0.0;
724cf1a0672SHong Zhang       k++;
725cf1a0672SHong Zhang     }
726cf1a0672SHong Zhang 
727910cf402Sprj-     /* 2nd off-diagonal part of C */
728cf1a0672SHong Zhang     ca = coa + co->i[i];
729cf1a0672SHong Zhang     for (; k0<conz; k0++) {
73029825010SHong Zhang       ca[k0]        = apa_sparse[k];
73129825010SHong Zhang       apa_sparse[k] = 0.0;
732cf1a0672SHong Zhang       k++;
733cf1a0672SHong Zhang     }
734cf1a0672SHong Zhang   }
735cf1a0672SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
736cf1a0672SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
737cf1a0672SHong Zhang   PetscFunctionReturn(0);
738cf1a0672SHong Zhang }
739cf1a0672SHong Zhang 
7400fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
7414222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat C)
742cf1a0672SHong Zhang {
743cf1a0672SHong Zhang   PetscErrorCode     ierr;
744ce94432eSBarry Smith   MPI_Comm           comm;
745a7c7454dSHong Zhang   PetscMPIInt        size;
7463cdca5ebSHong Zhang   Mat_APMPI          *ptap;
7470298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL,current_space=NULL;
7486718818eSStefano Zampini   Mat_MPIAIJ         *a  = (Mat_MPIAIJ*)A->data;
749cf1a0672SHong Zhang   Mat_SeqAIJ         *ad = (Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth;
7507dbaa2c6Sandi selinger   PetscInt           *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz;
751cf1a0672SHong Zhang   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart;
7528a210135Sandi selinger   PetscInt           i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi,*lnk,apnz_max=0;
753e5ab8c0aSKarl Rupp   PetscInt           am=A->rmap->n,pn=P->cmap->n,pm=P->rmap->n,lsize=pn+20;
754cf1a0672SHong Zhang   PetscReal          afill;
755b92f168fSBarry Smith   MatType            mtype;
756cf1a0672SHong Zhang 
757cf1a0672SHong Zhang   PetscFunctionBegin;
7586718818eSStefano Zampini   MatCheckProduct(C,4);
7596718818eSStefano Zampini   if (C->product->data) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
760ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
761a7c7454dSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
762a7c7454dSHong Zhang 
7633cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
764b00a9115SJed Brown   ierr = PetscNew(&ptap);CHKERRQ(ierr);
765cf1a0672SHong Zhang 
766cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
767b7f45c76SHong Zhang   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
76819f0e57aSHong Zhang 
769cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
770cf1a0672SHong Zhang   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
771cf1a0672SHong Zhang 
772cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
773cf1a0672SHong Zhang   pi_loc = p_loc->i; pj_loc = p_loc->j;
774a7c7454dSHong Zhang   if (size > 1) {
775a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ*)(ptap->P_oth)->data;
77620e3dc75SHong Zhang     pi_oth = p_oth->i; pj_oth = p_oth->j;
777968382fdSHong Zhang   } else {
77820e3dc75SHong Zhang     p_oth  = NULL;
77920e3dc75SHong Zhang     pi_oth = NULL; pj_oth = NULL;
780a7c7454dSHong Zhang   }
781cf1a0672SHong Zhang 
782cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
783cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
784854ce69bSBarry Smith   ierr      = PetscMalloc1(am+2,&api);CHKERRQ(ierr);
785cf1a0672SHong Zhang   ptap->api = api;
786cf1a0672SHong Zhang   api[0]    = 0;
787cf1a0672SHong Zhang 
7888a210135Sandi selinger   ierr = PetscLLCondensedCreate_Scalable(lsize,&lnk);CHKERRQ(ierr);
789cf1a0672SHong Zhang 
790cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
791f91af8c7SBarry Smith   ierr = PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space);CHKERRQ(ierr);
792cf1a0672SHong Zhang   current_space = free_space;
793cf1a0672SHong Zhang   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
794cf1a0672SHong Zhang   for (i=0; i<am; i++) {
795cf1a0672SHong Zhang     /* diagonal portion of A */
796cf1a0672SHong Zhang     nzi = adi[i+1] - adi[i];
797cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
798cf1a0672SHong Zhang       row  = *adj++;
799cf1a0672SHong Zhang       pnz  = pi_loc[row+1] - pi_loc[row];
800cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8018a210135Sandi selinger       /* Expand list if it is not long enough */
8028328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8038328dd82Sandi selinger         lsize = pnz+apnz_max;
80426465080Sandi selinger         ierr = PetscLLCondensedExpand_Scalable(lsize, &lnk);CHKERRQ(ierr);
8058a210135Sandi selinger       }
806cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
807f84c536bSHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk);CHKERRQ(ierr);
8088a210135Sandi selinger       apnz     = *lnk; /* The first element in the list is the number of items in the list */
8098a210135Sandi selinger       api[i+1] = api[i] + apnz;
8108a210135Sandi selinger       if (apnz > apnz_max) apnz_max = apnz;
811cf1a0672SHong Zhang     }
812cf1a0672SHong Zhang     /* off-diagonal portion of A */
813cf1a0672SHong Zhang     nzi = aoi[i+1] - aoi[i];
814cf1a0672SHong Zhang     for (j=0; j<nzi; j++) {
815cf1a0672SHong Zhang       row  = *aoj++;
816cf1a0672SHong Zhang       pnz  = pi_oth[row+1] - pi_oth[row];
817cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8188a210135Sandi selinger       /* Expand list if it is not long enough */
8198328dd82Sandi selinger       if (pnz+apnz_max > lsize) {
8208328dd82Sandi selinger         lsize = pnz + apnz_max;
82126465080Sandi selinger         ierr = PetscLLCondensedExpand_Scalable(lsize, &lnk);CHKERRQ(ierr);
8228a210135Sandi selinger       }
8238a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
824f84c536bSHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(pnz,Jptr,lnk);CHKERRQ(ierr);
8258a210135Sandi selinger       apnz     = *lnk;  /* The first element in the list is the number of items in the list */
8268a210135Sandi selinger       api[i+1] = api[i] + apnz;
8278a210135Sandi selinger       if (apnz > apnz_max) apnz_max = apnz;
828cf1a0672SHong Zhang     }
829f84c536bSHong Zhang     apnz     = *lnk;
830cf1a0672SHong Zhang     api[i+1] = api[i] + apnz;
8318a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
832cf1a0672SHong Zhang 
833cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
834cf1a0672SHong Zhang     if (current_space->local_remaining<apnz) {
835f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(apnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
836cf1a0672SHong Zhang       nspacedouble++;
837cf1a0672SHong Zhang     }
838cf1a0672SHong Zhang 
839cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
840f84c536bSHong Zhang     ierr = PetscLLCondensedClean_Scalable(apnz,current_space->array,lnk);CHKERRQ(ierr);
841cf1a0672SHong Zhang     ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr);
8422205254eSKarl Rupp 
843cf1a0672SHong Zhang     current_space->array           += apnz;
844cf1a0672SHong Zhang     current_space->local_used      += apnz;
845cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
846cf1a0672SHong Zhang   }
847cf1a0672SHong Zhang 
848cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
849cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
850854ce69bSBarry Smith   ierr = PetscMalloc1(api[am]+1,&ptap->apj);CHKERRQ(ierr);
851cf1a0672SHong Zhang   apj  = ptap->apj;
852cf1a0672SHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr);
853f84c536bSHong Zhang   ierr = PetscLLCondensedDestroy_Scalable(lnk);CHKERRQ(ierr);
854cf1a0672SHong Zhang 
8554222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
856cf1a0672SHong Zhang   /*----------------------------------------------------*/
8574222ddf1SHong Zhang   ierr = MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
8584222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,P);CHKERRQ(ierr);
859b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
8604222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
8614222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
8620926fe31SStefano Zampini   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
863cf1a0672SHong Zhang 
8644222ddf1SHong Zhang   /* malloc apa for assembly C */
865071fcb05SBarry Smith   ierr = PetscCalloc1(apnz_max,&ptap->apa);CHKERRQ(ierr);
86617f75172Sandi selinger 
8674222ddf1SHong Zhang   ierr = MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api);CHKERRQ(ierr);
8684222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8694222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8700926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
871cf1a0672SHong Zhang 
8724222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
8734222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
874cf1a0672SHong Zhang 
8754222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
8766718818eSStefano Zampini   C->product->data    = ptap;
8776718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
878cf1a0672SHong Zhang 
879cf1a0672SHong Zhang   /* set MatInfo */
880118727c9SMark F. Adams   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
881cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
8824222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
8834222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
8844222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
885cf1a0672SHong Zhang 
886cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
887cf1a0672SHong Zhang   if (api[am]) {
8884222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
8894222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill);CHKERRQ(ierr);
890cf1a0672SHong Zhang   } else {
8914222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
892cf1a0672SHong Zhang   }
893cf1a0672SHong Zhang #endif
8941634b032SHong Zhang   PetscFunctionReturn(0);
8951634b032SHong Zhang }
896f96d37fcSHong Zhang 
897a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
898a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
899a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
900a9d7e0ccSandi selinger static void Merge3SortedArrays(PetscInt  size1, PetscInt *in1,
901a9d7e0ccSandi selinger                                PetscInt  size2, PetscInt *in2,
902a9d7e0ccSandi selinger                                PetscInt  size3, PetscInt *in3,
903a9d7e0ccSandi selinger                                PetscInt *size4, PetscInt *out)
904a9d7e0ccSandi selinger {
905a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
906a9d7e0ccSandi selinger 
907a9d7e0ccSandi selinger   /* Traverse all three arrays */
908a9d7e0ccSandi selinger   while (i<size1 && j<size2 && k<size3) {
909a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
910a9d7e0ccSandi selinger       out[l++] = in1[i++];
911a9d7e0ccSandi selinger     }
912a9d7e0ccSandi selinger     else if (in2[j] < in1[i] && in2[j] < in3[k]) {
913a9d7e0ccSandi selinger       out[l++] = in2[j++];
914a9d7e0ccSandi selinger     }
915a9d7e0ccSandi selinger     else if (in3[k] < in1[i] && in3[k] < in2[j]) {
916a9d7e0ccSandi selinger       out[l++] = in3[k++];
917a9d7e0ccSandi selinger     }
918a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] < in3[k]) {
919a9d7e0ccSandi selinger       out[l++] = in1[i];
920a9d7e0ccSandi selinger       i++, j++;
921a9d7e0ccSandi selinger     }
922a9d7e0ccSandi selinger     else if (in1[i] == in3[k] && in1[i] < in2[j]) {
923a9d7e0ccSandi selinger       out[l++] = in1[i];
924a9d7e0ccSandi selinger       i++, k++;
925a9d7e0ccSandi selinger     }
926a9d7e0ccSandi selinger     else if (in3[k] == in2[j] && in2[j] < in1[i])  {
927a9d7e0ccSandi selinger       out[l++] = in2[j];
928a9d7e0ccSandi selinger       k++, j++;
929a9d7e0ccSandi selinger     }
930a9d7e0ccSandi selinger     else if (in1[i] == in2[j] && in1[i] == in3[k]) {
931a9d7e0ccSandi selinger       out[l++] = in1[i];
932a9d7e0ccSandi selinger       i++, j++, k++;
933a9d7e0ccSandi selinger     }
934a9d7e0ccSandi selinger   }
935a9d7e0ccSandi selinger 
936a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
937a9d7e0ccSandi selinger   while (i<size1 && j<size2) {
938a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
939a9d7e0ccSandi selinger       out[l++] = in1[i++];
940a9d7e0ccSandi selinger     }
941a9d7e0ccSandi selinger     else if (in1[i] > in2[j]) {
942a9d7e0ccSandi selinger       out[l++] = in2[j++];
943a9d7e0ccSandi selinger     }
944a9d7e0ccSandi selinger     else {
945a9d7e0ccSandi selinger       out[l++] = in1[i];
946a9d7e0ccSandi selinger       i++, j++;
947a9d7e0ccSandi selinger     }
948a9d7e0ccSandi selinger   }
949a9d7e0ccSandi selinger 
950a9d7e0ccSandi selinger   while (i<size1 && k<size3) {
951a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
952a9d7e0ccSandi selinger       out[l++] = in1[i++];
953a9d7e0ccSandi selinger     }
954a9d7e0ccSandi selinger     else if (in1[i] > in3[k]) {
955a9d7e0ccSandi selinger       out[l++] = in3[k++];
956a9d7e0ccSandi selinger     }
957a9d7e0ccSandi selinger     else {
958a9d7e0ccSandi selinger       out[l++] = in1[i];
959a9d7e0ccSandi selinger       i++, k++;
960a9d7e0ccSandi selinger     }
961a9d7e0ccSandi selinger   }
962a9d7e0ccSandi selinger 
963a9d7e0ccSandi selinger   while (k<size3 && j<size2)  {
964a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
965a9d7e0ccSandi selinger       out[l++] = in3[k++];
966a9d7e0ccSandi selinger     }
967a9d7e0ccSandi selinger     else if (in3[k] > in2[j]) {
968a9d7e0ccSandi selinger       out[l++] = in2[j++];
969a9d7e0ccSandi selinger     }
970a9d7e0ccSandi selinger     else {
971a9d7e0ccSandi selinger       out[l++] = in3[k];
972a9d7e0ccSandi selinger       k++, j++;
973a9d7e0ccSandi selinger     }
974a9d7e0ccSandi selinger   }
975a9d7e0ccSandi selinger 
976a9d7e0ccSandi selinger   /* Traverse one remaining array */
977a9d7e0ccSandi selinger   while (i<size1) out[l++] = in1[i++];
978a9d7e0ccSandi selinger   while (j<size2) out[l++] = in2[j++];
979a9d7e0ccSandi selinger   while (k<size3) out[l++] = in3[k++];
980a9d7e0ccSandi selinger 
981a9d7e0ccSandi selinger   *size4 = l;
982a9d7e0ccSandi selinger }
983a9d7e0ccSandi selinger 
98473b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
98573b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
98673b67375Sandi selinger /* matrix-matrix multiplications.  */
9874222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
988a9d7e0ccSandi selinger {
989a9d7e0ccSandi selinger   PetscErrorCode     ierr;
990a9d7e0ccSandi selinger   MPI_Comm           comm;
991a9d7e0ccSandi selinger   PetscMPIInt        size;
9923cdca5ebSHong Zhang   Mat_APMPI          *ptap;
993a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag=NULL, current_space=NULL;
994a9d7e0ccSandi selinger   Mat_MPIAIJ         *a  =(Mat_MPIAIJ*)A->data;
995a9d7e0ccSandi selinger   Mat_SeqAIJ         *ad =(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc;
996a9d7e0ccSandi selinger   Mat_MPIAIJ         *p  =(Mat_MPIAIJ*)P->data;
997a9d7e0ccSandi selinger   Mat_SeqAIJ         *adpd_seq, *p_off, *aopoth_seq;
998a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
9997dbaa2c6Sandi selinger   PetscInt           *pi_loc,*dnz,*onz;
1000a9d7e0ccSandi selinger   PetscInt           *adi=ad->i,*adj=ad->j,*aoi=ao->i,rstart=A->rmap->rstart;
1001a9d7e0ccSandi selinger   PetscInt           *lnk,i, i1=0,pnz,row,*adpoi,*adpoj, *api, *adpoJ, *aopJ, *apJ,*Jptr, aopnz, nspacedouble=0,j,nzi,
1002a9d7e0ccSandi selinger                      *apj,apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1003a016958eSandi selinger   PetscInt           am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n, p_colstart, p_colend;
1004a9d7e0ccSandi selinger   PetscBT            lnkbt;
1005a9d7e0ccSandi selinger   PetscReal          afill;
1006a9d7e0ccSandi selinger   PetscMPIInt        rank;
1007a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1008b92f168fSBarry Smith   MatType            mtype;
1009e83e5f86SFande Kong   const char         *prefix;
1010a9d7e0ccSandi selinger 
1011a9d7e0ccSandi selinger   PetscFunctionBegin;
10126718818eSStefano Zampini   MatCheckProduct(C,4);
10136718818eSStefano Zampini   if (C->product->data) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
1014a9d7e0ccSandi selinger   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1015a9d7e0ccSandi selinger   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
101673b67375Sandi selinger   ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr);
1017a016958eSandi selinger   ierr = MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend);CHKERRQ(ierr);
1018a9d7e0ccSandi selinger 
10193cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
1020a9d7e0ccSandi selinger   ierr = PetscNew(&ptap);CHKERRQ(ierr);
1021a9d7e0ccSandi selinger 
1022a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
1023a9d7e0ccSandi selinger   ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj_s,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr);
1024a9d7e0ccSandi selinger 
1025a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
1026a9d7e0ccSandi selinger   ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr);
1027a9d7e0ccSandi selinger 
1028a9d7e0ccSandi selinger 
1029a9d7e0ccSandi selinger   p_loc  = (Mat_SeqAIJ*)(ptap->P_loc)->data;
1030a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1031a9d7e0ccSandi selinger 
1032a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
1033a9d7e0ccSandi selinger   ierr      = PetscMalloc1(am+2,&api);CHKERRQ(ierr);
1034a9d7e0ccSandi selinger   ierr      = PetscMalloc1(am+2,&adpoi);CHKERRQ(ierr);
1035a9d7e0ccSandi selinger 
1036a9d7e0ccSandi selinger   adpoi[0]    = 0;
1037a9d7e0ccSandi selinger   ptap->api = api;
1038a9d7e0ccSandi selinger   api[0] = 0;
1039a9d7e0ccSandi selinger 
1040a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
1041a9d7e0ccSandi selinger   ierr = PetscLLCondensedCreate(pN,pN,&lnk,&lnkbt);CHKERRQ(ierr);
1042a9d7e0ccSandi selinger   ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr);
1043a9d7e0ccSandi selinger 
1044a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
1045e83e5f86SFande Kong   ierr = MatGetOptionsPrefix(A,&prefix);CHKERRQ(ierr);
10464222ddf1SHong Zhang   ierr = MatProductCreate(a->A,p->A,NULL,&adpd);CHKERRQ(ierr);
10474222ddf1SHong Zhang   ierr = MatGetOptionsPrefix(A,&prefix);CHKERRQ(ierr);
10484222ddf1SHong Zhang   ierr = MatSetOptionsPrefix(adpd,prefix);CHKERRQ(ierr);
10494222ddf1SHong Zhang   ierr = MatAppendOptionsPrefix(adpd,"inner_diag_");CHKERRQ(ierr);
10504222ddf1SHong Zhang 
10514222ddf1SHong Zhang   ierr = MatProductSetType(adpd,MATPRODUCT_AB);CHKERRQ(ierr);
10524222ddf1SHong Zhang   ierr = MatProductSetAlgorithm(adpd,"sorted");CHKERRQ(ierr);
10534222ddf1SHong Zhang   ierr = MatProductSetFill(adpd,fill);CHKERRQ(ierr);
10544222ddf1SHong Zhang   ierr = MatProductSetFromOptions(adpd);CHKERRQ(ierr);
10554222ddf1SHong Zhang   ierr = MatProductSymbolic(adpd);CHKERRQ(ierr);
10564222ddf1SHong Zhang 
1057a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ*)((adpd)->data);
1058a9d7e0ccSandi selinger   adpdi = adpd_seq->i; adpdj = adpd_seq->j;
1059a9d7e0ccSandi selinger   p_off = (Mat_SeqAIJ*)((p->B)->data);
1060a9d7e0ccSandi selinger   poff_i = p_off->i; poff_j = p_off->j;
1061a9d7e0ccSandi selinger 
106273b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
1063a9d7e0ccSandi selinger   ierr = PetscMalloc1(pN+2,&j_temp);CHKERRQ(ierr);
1064a9d7e0ccSandi selinger 
1065a9d7e0ccSandi selinger 
1066a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1067a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
1068a9d7e0ccSandi selinger   ierr = PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(adi[am],PetscIntSumTruncate(aoi[am],pi_loc[pm]))),&free_space_diag);CHKERRQ(ierr);
1069a9d7e0ccSandi selinger   current_space = free_space_diag;
1070a9d7e0ccSandi selinger 
1071a9d7e0ccSandi selinger   for (i=0; i<am; i++) {
1072a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1073a9d7e0ccSandi selinger     nzi = adi[i+1] - adi[i];
1074a9d7e0ccSandi selinger     for (j=0; j<nzi; j++) {
1075a9d7e0ccSandi selinger       row  = *adj++;
1076a9d7e0ccSandi selinger       pnz  = poff_i[row+1] - poff_i[row];
1077a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1078a9d7e0ccSandi selinger       for (i1 = 0; i1 < pnz; i1++) {
1079a9d7e0ccSandi selinger         j_temp[i1] = p->garray[Jptr[i1]];
1080a9d7e0ccSandi selinger       }
1081a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
1082a9d7e0ccSandi selinger       ierr = PetscLLCondensedAddSorted(pnz,j_temp,lnk,lnkbt);CHKERRQ(ierr);
1083a9d7e0ccSandi selinger     }
1084a9d7e0ccSandi selinger 
1085a9d7e0ccSandi selinger     adponz     = lnk[0];
1086a9d7e0ccSandi selinger     adpoi[i+1] = adpoi[i] + adponz;
1087a9d7e0ccSandi selinger 
1088a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1089a9d7e0ccSandi selinger     if (current_space->local_remaining<adponz) {
1090a9d7e0ccSandi selinger       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(adponz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
1091a9d7e0ccSandi selinger       nspacedouble++;
1092a9d7e0ccSandi selinger     }
1093a9d7e0ccSandi selinger 
1094a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
1095a9d7e0ccSandi selinger     ierr = PetscLLCondensedClean(pN,adponz,current_space->array,lnk,lnkbt);CHKERRQ(ierr);
1096a9d7e0ccSandi selinger 
1097a9d7e0ccSandi selinger     current_space->array           += adponz;
1098a9d7e0ccSandi selinger     current_space->local_used      += adponz;
1099a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1100a9d7e0ccSandi selinger   }
1101a9d7e0ccSandi selinger 
1102a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
1103e83e5f86SFande Kong   ierr = MatSetOptionsPrefix(a->B,prefix);CHKERRQ(ierr);
1104e83e5f86SFande Kong   ierr = MatAppendOptionsPrefix(a->B,"inner_offdiag_");CHKERRQ(ierr);
11054222ddf1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&aopoth);CHKERRQ(ierr);
11064222ddf1SHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth);CHKERRQ(ierr);
1107a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ*)((aopoth)->data);
1108a9d7e0ccSandi selinger   aopothi = aopoth_seq->i; aopothj = aopoth_seq->j;
1109a9d7e0ccSandi selinger 
1110a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1111a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1112a9d7e0ccSandi selinger 
1113a9d7e0ccSandi selinger   ierr = PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am]+2, &ptap->apj);CHKERRQ(ierr);
1114a9d7e0ccSandi selinger   ierr = PetscMalloc1(adpoi[am]+2, &adpoj);CHKERRQ(ierr);
1115a9d7e0ccSandi selinger 
1116a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
1117a9d7e0ccSandi selinger   ierr = PetscFreeSpaceContiguous(&free_space_diag,adpoj);CHKERRQ(ierr);
1118a9d7e0ccSandi selinger   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
1119a9d7e0ccSandi selinger 
1120a9d7e0ccSandi selinger   adpoJ = adpoj;
1121a9d7e0ccSandi selinger   adpdJ = adpdj;
1122a9d7e0ccSandi selinger   aopJ = aopothj;
1123a9d7e0ccSandi selinger   apj  = ptap->apj;
1124a9d7e0ccSandi selinger   apJ = apj; /* still empty */
1125a9d7e0ccSandi selinger 
1126a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1127a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1128a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1129a9d7e0ccSandi selinger     aopnz  =  aopothi[i+1] -  aopothi[i];
1130a9d7e0ccSandi selinger     adponz = adpoi[i+1] - adpoi[i];
1131a9d7e0ccSandi selinger     adpdnz = adpdi[i+1] - adpdi[i];
1132a9d7e0ccSandi selinger 
1133a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1134a9d7e0ccSandi selinger     for (i1 = 0; i1 < adpdnz; i1++) {
1135a016958eSandi selinger       adpdJ[i1] += p_colstart;
1136a9d7e0ccSandi selinger     }
1137a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1138a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
1139a9d7e0ccSandi selinger     ierr = MatPreallocateSet(i+rstart, apnz, apJ, dnz, onz);CHKERRQ(ierr);
1140a9d7e0ccSandi selinger 
1141a9d7e0ccSandi selinger     aopJ += aopnz;
1142a9d7e0ccSandi selinger     adpoJ += adponz;
1143a9d7e0ccSandi selinger     adpdJ += adpdnz;
1144a9d7e0ccSandi selinger     apJ += apnz;
1145a9d7e0ccSandi selinger     api[i+1] = api[i] + apnz;
1146a9d7e0ccSandi selinger   }
1147a9d7e0ccSandi selinger 
1148a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
1149071fcb05SBarry Smith   ierr = PetscCalloc1(pN+2,&ptap->apa);CHKERRQ(ierr);
1150a9d7e0ccSandi selinger 
11514222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11524222ddf1SHong Zhang   ierr = MatSetSizes(C,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
11534222ddf1SHong Zhang   ierr = MatSetBlockSizesFromMats(C,A,P);CHKERRQ(ierr);
1154b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
11554222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
11564222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
11570926fe31SStefano Zampini   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
115817f75172Sandi selinger 
11594222ddf1SHong Zhang   ierr = MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api);CHKERRQ(ierr);
11604222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11614222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11620926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
116317f75172Sandi selinger 
11644222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11654222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1166a9d7e0ccSandi selinger 
11674222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11686718818eSStefano Zampini   C->product->data    = ptap;
11696718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1170a9d7e0ccSandi selinger 
1171a9d7e0ccSandi selinger   /* set MatInfo */
117273b67375Sandi selinger   afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]+1) + 1.e-5;
117373b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
11744222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
11754222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
11764222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1177a9d7e0ccSandi selinger 
1178a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1179a9d7e0ccSandi selinger   if (api[am]) {
11804222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
11814222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill);CHKERRQ(ierr);
1182a9d7e0ccSandi selinger   } else {
11834222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
1184a9d7e0ccSandi selinger   }
1185a9d7e0ccSandi selinger #endif
1186a9d7e0ccSandi selinger 
118773b67375Sandi selinger   ierr = MatDestroy(&aopoth);CHKERRQ(ierr);
118873b67375Sandi selinger   ierr = MatDestroy(&adpd);CHKERRQ(ierr);
118973b67375Sandi selinger   ierr = PetscFree(j_temp);CHKERRQ(ierr);
119073b67375Sandi selinger   ierr = PetscFree(adpoj);CHKERRQ(ierr);
119173b67375Sandi selinger   ierr = PetscFree(adpoi);CHKERRQ(ierr);
1192a9d7e0ccSandi selinger   PetscFunctionReturn(0);
1193a9d7e0ccSandi selinger }
1194a9d7e0ccSandi selinger 
1195f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/
1196c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1197c216dbf3SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P,Mat A,Mat C)
1198c216dbf3SHong Zhang {
1199c216dbf3SHong Zhang   PetscErrorCode ierr;
12006718818eSStefano Zampini   Mat_APMPI      *ptap;
120160552ceaSHong Zhang   Mat            Pt;
1202c216dbf3SHong Zhang 
1203c216dbf3SHong Zhang   PetscFunctionBegin;
12046718818eSStefano Zampini   MatCheckProduct(C,3);
12056718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
12066718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
12076718818eSStefano Zampini   if (!ptap->Pt) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
120860552ceaSHong Zhang 
120960552ceaSHong Zhang   Pt   = ptap->Pt;
1210c216dbf3SHong Zhang   ierr = MatTranspose(P,MAT_REUSE_MATRIX,&Pt);CHKERRQ(ierr);
12114222ddf1SHong Zhang   ierr = MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt,A,C);CHKERRQ(ierr);
1212f96d37fcSHong Zhang   PetscFunctionReturn(0);
1213f96d37fcSHong Zhang }
1214f96d37fcSHong Zhang 
1215c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
12164222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,PetscReal fill,Mat C)
1217912837bbSHong Zhang {
1218912837bbSHong Zhang   PetscErrorCode      ierr;
12193cdca5ebSHong Zhang   Mat_APMPI           *ptap;
12206718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data;
1221912837bbSHong Zhang   MPI_Comm            comm;
1222912837bbSHong Zhang   PetscMPIInt         size,rank;
1223912837bbSHong Zhang   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
12244ede91e3SHong Zhang   PetscInt            pn=P->cmap->n,aN=A->cmap->N,an=A->cmap->n;
122569be949aSStefano Zampini   PetscInt            *lnk,i,k,nsend,rstart;
1226912837bbSHong Zhang   PetscBT             lnkbt;
1227ec4bef21SJose E. Roman   PetscMPIInt         tagi,tagj,*len_si,*len_s,*len_ri,nrecv;
1228ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted=0;
1229912837bbSHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k;
12307f3e1f30SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners,nzi;
1231912837bbSHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1232912837bbSHong Zhang   MPI_Request         *swaits,*rwaits;
1233912837bbSHong Zhang   MPI_Status          *sstatus,rstatus;
1234912837bbSHong Zhang   PetscLayout         rowmap;
1235912837bbSHong Zhang   PetscInt            *owners_co,*coi,*coj;    /* i and j array of (p->B)^T*A*P - used in the communication */
1236912837bbSHong Zhang   PetscMPIInt         *len_r,*id_r;    /* array of length of comm->size, store send/recv matrix values */
12377f3e1f30SHong Zhang   PetscInt            *Jptr,*prmap=p->garray,con,j,Crmax;
12384ede91e3SHong Zhang   Mat_SeqAIJ          *a_loc,*c_loc,*c_oth;
1239912837bbSHong Zhang   PetscTable          ta;
1240b92f168fSBarry Smith   MatType             mtype;
1241e83e5f86SFande Kong   const char          *prefix;
1242912837bbSHong Zhang 
1243912837bbSHong Zhang   PetscFunctionBegin;
1244912837bbSHong Zhang   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1245912837bbSHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1246912837bbSHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1247912837bbSHong Zhang 
12484222ddf1SHong Zhang   /* create symbolic parallel matrix C */
1249b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
12504222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
1251912837bbSHong Zhang 
12524222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1253912837bbSHong Zhang 
12543cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
1255912837bbSHong Zhang   ierr = PetscNew(&ptap);CHKERRQ(ierr);
1256912837bbSHong Zhang   ptap->reuse = MAT_INITIAL_MATRIX;
1257912837bbSHong Zhang 
1258912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1259912837bbSHong Zhang   /* --------------------------------- */
1260912837bbSHong Zhang   ierr = MatTranspose_SeqAIJ(p->A,MAT_INITIAL_MATRIX,&ptap->Rd);CHKERRQ(ierr);
1261912837bbSHong Zhang   ierr = MatTranspose_SeqAIJ(p->B,MAT_INITIAL_MATRIX,&ptap->Ro);CHKERRQ(ierr);
1262912837bbSHong Zhang 
1263669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
1264669e9c86SHong Zhang   /* ---------------------------*/
12654ede91e3SHong Zhang   ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&ptap->A_loc);CHKERRQ(ierr);
1266912837bbSHong Zhang 
12674ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
1268912837bbSHong Zhang   /* ------------------------------------ */
1269e83e5f86SFande Kong   ierr = MatGetOptionsPrefix(A,&prefix);CHKERRQ(ierr);
1270e83e5f86SFande Kong   ierr = MatSetOptionsPrefix(ptap->Ro,prefix);CHKERRQ(ierr);
1271e83e5f86SFande Kong   ierr = MatAppendOptionsPrefix(ptap->Ro,"inner_offdiag_");CHKERRQ(ierr);
12724222ddf1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&ptap->C_oth);CHKERRQ(ierr);
12734222ddf1SHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro,ptap->A_loc,fill,ptap->C_oth);CHKERRQ(ierr);
1274912837bbSHong Zhang 
1275912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1276912837bbSHong Zhang   /* ------------------------------------------ */
1277912837bbSHong Zhang   /* determine row ownership */
1278912837bbSHong Zhang   ierr = PetscLayoutCreate(comm,&rowmap);CHKERRQ(ierr);
1279912837bbSHong Zhang   rowmap->n  = pn;
1280912837bbSHong Zhang   rowmap->bs = 1;
1281912837bbSHong Zhang   ierr   = PetscLayoutSetUp(rowmap);CHKERRQ(ierr);
1282912837bbSHong Zhang   owners = rowmap->range;
1283912837bbSHong Zhang 
1284912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
1285912837bbSHong Zhang   ierr = PetscMalloc4(size,&len_s,size,&len_si,size,&sstatus,size+2,&owners_co);CHKERRQ(ierr);
1286580bdb30SBarry Smith   ierr = PetscArrayzero(len_s,size);CHKERRQ(ierr);
1287580bdb30SBarry Smith   ierr = PetscArrayzero(len_si,size);CHKERRQ(ierr);
1288912837bbSHong Zhang 
1289912837bbSHong Zhang   c_oth = (Mat_SeqAIJ*)ptap->C_oth->data;
1290912837bbSHong Zhang   coi   = c_oth->i; coj = c_oth->j;
1291912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1292912837bbSHong Zhang   proc  = 0;
1293912837bbSHong Zhang   for (i=0; i<con; i++) {
1294912837bbSHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
12957f3e1f30SHong Zhang     len_si[proc]++;               /* num of rows in Co(=Pt*A) to be sent to [proc] */
1296912837bbSHong Zhang     len_s[proc] += coi[i+1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1297912837bbSHong Zhang   }
1298912837bbSHong Zhang 
1299912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1300912837bbSHong Zhang   owners_co[0] = 0;
1301912837bbSHong Zhang   nsend        = 0;
1302912837bbSHong Zhang   for (proc=0; proc<size; proc++) {
1303912837bbSHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1304912837bbSHong Zhang     if (len_s[proc]) {
1305912837bbSHong Zhang       nsend++;
1306912837bbSHong Zhang       len_si[proc] = 2*(len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1307912837bbSHong Zhang       len         += len_si[proc];
1308912837bbSHong Zhang     }
1309912837bbSHong Zhang   }
1310912837bbSHong Zhang 
1311912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
1312912837bbSHong Zhang   ierr = PetscGatherNumberOfMessages(comm,NULL,len_s,&nrecv);CHKERRQ(ierr);
1313912837bbSHong Zhang   ierr = PetscGatherMessageLengths2(comm,nsend,nrecv,len_s,len_si,&id_r,&len_r,&len_ri);CHKERRQ(ierr);
1314912837bbSHong Zhang 
1315912837bbSHong Zhang   /* post the Irecv and Isend of coj */
1316912837bbSHong Zhang   ierr = PetscCommGetNewTag(comm,&tagj);CHKERRQ(ierr);
1317912837bbSHong Zhang   ierr = PetscPostIrecvInt(comm,tagj,nrecv,id_r,len_r,&buf_rj,&rwaits);CHKERRQ(ierr);
1318912837bbSHong Zhang   ierr = PetscMalloc1(nsend+1,&swaits);CHKERRQ(ierr);
1319912837bbSHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1320912837bbSHong Zhang     if (!len_s[proc]) continue;
1321912837bbSHong Zhang     i    = owners_co[proc];
1322912837bbSHong Zhang     ierr = MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k);CHKERRQ(ierr);
1323912837bbSHong Zhang     k++;
1324912837bbSHong Zhang   }
1325912837bbSHong Zhang 
13267f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
1327912837bbSHong Zhang   /* ---------------------------------------- */
1328e83e5f86SFande Kong   ierr = MatSetOptionsPrefix(ptap->Rd,prefix);CHKERRQ(ierr);
1329e83e5f86SFande Kong   ierr = MatAppendOptionsPrefix(ptap->Rd,"inner_diag_");CHKERRQ(ierr);
13304222ddf1SHong Zhang   ierr = MatCreate(PETSC_COMM_SELF,&ptap->C_loc);CHKERRQ(ierr);
13314222ddf1SHong Zhang   ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd,ptap->A_loc,fill,ptap->C_loc);CHKERRQ(ierr);
1332912837bbSHong Zhang   c_loc = (Mat_SeqAIJ*)ptap->C_loc->data;
1333912837bbSHong Zhang 
1334912837bbSHong Zhang   /* receives coj are complete */
1335912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
1336912837bbSHong Zhang     ierr = MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus);CHKERRQ(ierr);
1337912837bbSHong Zhang   }
1338912837bbSHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1339912837bbSHong Zhang   if (nsend) {ierr = MPI_Waitall(nsend,swaits,sstatus);CHKERRQ(ierr);}
1340912837bbSHong Zhang 
1341912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
13424ede91e3SHong Zhang   a_loc = (Mat_SeqAIJ*)(ptap->A_loc)->data;
1343669e9c86SHong Zhang 
1344669e9c86SHong Zhang   /* create and initialize a linked list */
13454ede91e3SHong Zhang   ierr = PetscTableCreate(an,aN,&ta);CHKERRQ(ierr); /* for compute Crmax */
13464ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,ptap->A_loc->rmap->N,ta);
1347669e9c86SHong Zhang 
1348912837bbSHong Zhang   for (k=0; k<nrecv; k++) {/* k-th received message */
1349912837bbSHong Zhang     Jptr = buf_rj[k];
1350912837bbSHong Zhang     for (j=0; j<len_r[k]; j++) {
1351912837bbSHong Zhang       ierr = PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES);CHKERRQ(ierr);
1352912837bbSHong Zhang     }
1353912837bbSHong Zhang   }
1354912837bbSHong Zhang   ierr = PetscTableGetCount(ta,&Crmax);CHKERRQ(ierr);
1355912837bbSHong Zhang   ierr = PetscTableDestroy(&ta);CHKERRQ(ierr);
1356912837bbSHong Zhang 
1357912837bbSHong Zhang   /* (4) send and recv coi */
1358912837bbSHong Zhang   /*-----------------------*/
1359912837bbSHong Zhang   ierr   = PetscCommGetNewTag(comm,&tagi);CHKERRQ(ierr);
1360912837bbSHong Zhang   ierr   = PetscPostIrecvInt(comm,tagi,nrecv,id_r,len_ri,&buf_ri,&rwaits);CHKERRQ(ierr);
1361912837bbSHong Zhang   ierr   = PetscMalloc1(len+1,&buf_s);CHKERRQ(ierr);
1362912837bbSHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1363912837bbSHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1364912837bbSHong Zhang     if (!len_s[proc]) continue;
1365912837bbSHong Zhang     /* form outgoing message for i-structure:
1366912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1367912837bbSHong Zhang                [1:nrows]:           row index (global)
1368912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1369912837bbSHong Zhang     */
1370912837bbSHong Zhang     /*-------------------------------------------*/
1371912837bbSHong Zhang     nrows       = len_si[proc]/2 - 1; /* num of rows in Co to be sent to [proc] */
1372912837bbSHong Zhang     buf_si_i    = buf_si + nrows+1;
1373912837bbSHong Zhang     buf_si[0]   = nrows;
1374912837bbSHong Zhang     buf_si_i[0] = 0;
1375912837bbSHong Zhang     nrows       = 0;
1376912837bbSHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1377912837bbSHong Zhang       nzi = coi[i+1] - coi[i];
1378912837bbSHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1379912837bbSHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1380912837bbSHong Zhang       nrows++;
1381912837bbSHong Zhang     }
1382912837bbSHong Zhang     ierr = MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k);CHKERRQ(ierr);
1383912837bbSHong Zhang     k++;
1384912837bbSHong Zhang     buf_si += len_si[proc];
1385912837bbSHong Zhang   }
1386912837bbSHong Zhang   for (i=0; i<nrecv; i++) {
1387912837bbSHong Zhang     ierr = MPI_Waitany(nrecv,rwaits,&icompleted,&rstatus);CHKERRQ(ierr);
1388912837bbSHong Zhang   }
1389912837bbSHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1390912837bbSHong Zhang   if (nsend) {ierr = MPI_Waitall(nsend,swaits,sstatus);CHKERRQ(ierr);}
1391912837bbSHong Zhang 
1392912837bbSHong Zhang   ierr = PetscFree4(len_s,len_si,sstatus,owners_co);CHKERRQ(ierr);
1393912837bbSHong Zhang   ierr = PetscFree(len_ri);CHKERRQ(ierr);
1394912837bbSHong Zhang   ierr = PetscFree(swaits);CHKERRQ(ierr);
1395912837bbSHong Zhang   ierr = PetscFree(buf_s);CHKERRQ(ierr);
1396912837bbSHong Zhang 
13974222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1398912837bbSHong Zhang   /* ------------------------------------------ */
13994222ddf1SHong Zhang   /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */
1400912837bbSHong Zhang   ierr          = PetscFreeSpaceGet(Crmax,&free_space);CHKERRQ(ierr);
1401912837bbSHong Zhang   current_space = free_space;
1402912837bbSHong Zhang 
1403912837bbSHong Zhang   ierr = PetscMalloc3(nrecv,&buf_ri_k,nrecv,&nextrow,nrecv,&nextci);CHKERRQ(ierr);
1404912837bbSHong Zhang   for (k=0; k<nrecv; k++) {
1405912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1406912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1407912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
1408912837bbSHong Zhang     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* poins to the next i-structure of k-th recved i-structure  */
1409912837bbSHong Zhang   }
1410912837bbSHong Zhang 
14114ede91e3SHong Zhang   ierr = MatPreallocateInitialize(comm,pn,an,dnz,onz);CHKERRQ(ierr);
14124ede91e3SHong Zhang   ierr = PetscLLCondensedCreate(Crmax,aN,&lnk,&lnkbt);CHKERRQ(ierr);
1413912837bbSHong Zhang   for (i=0; i<pn; i++) {
14144222ddf1SHong Zhang     /* add C_loc into C */
1415912837bbSHong Zhang     nzi  = c_loc->i[i+1] - c_loc->i[i];
1416912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
1417912837bbSHong Zhang     ierr = PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt);CHKERRQ(ierr);
1418912837bbSHong Zhang 
1419912837bbSHong Zhang     /* add received col data into lnk */
1420912837bbSHong Zhang     for (k=0; k<nrecv; k++) { /* k-th received message */
1421912837bbSHong Zhang       if (i == *nextrow[k]) { /* i-th row */
1422912837bbSHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
1423912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
1424912837bbSHong Zhang         ierr = PetscLLCondensedAddSorted(nzi,Jptr,lnk,lnkbt);CHKERRQ(ierr);
1425912837bbSHong Zhang         nextrow[k]++; nextci[k]++;
1426912837bbSHong Zhang       }
1427912837bbSHong Zhang     }
1428912837bbSHong Zhang     nzi = lnk[0];
1429912837bbSHong Zhang 
1430912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14314ede91e3SHong Zhang     ierr = PetscLLCondensedClean(aN,nzi,current_space->array,lnk,lnkbt);CHKERRQ(ierr);
1432912837bbSHong Zhang     ierr = MatPreallocateSet(i+owners[rank],nzi,current_space->array,dnz,onz);CHKERRQ(ierr);
1433912837bbSHong Zhang   }
1434912837bbSHong Zhang   ierr = PetscFree3(buf_ri_k,nextrow,nextci);CHKERRQ(ierr);
1435912837bbSHong Zhang   ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr);
1436912837bbSHong Zhang   ierr = PetscFreeSpaceDestroy(free_space);CHKERRQ(ierr);
1437912837bbSHong Zhang 
1438912837bbSHong Zhang   /* local sizes and preallocation */
14394222ddf1SHong Zhang   ierr = MatSetSizes(C,pn,an,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
14404222ddf1SHong Zhang   if (P->cmap->bs > 0) {ierr = PetscLayoutSetBlockSize(C->rmap,P->cmap->bs);CHKERRQ(ierr);}
14414222ddf1SHong Zhang   if (A->cmap->bs > 0) {ierr = PetscLayoutSetBlockSize(C->cmap,A->cmap->bs);CHKERRQ(ierr);}
14424222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
1443912837bbSHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
1444912837bbSHong Zhang 
144569be949aSStefano Zampini   /* add C_loc and C_oth to C */
144669be949aSStefano Zampini   ierr = MatGetOwnershipRange(C,&rstart,NULL);CHKERRQ(ierr);
144769be949aSStefano Zampini   for (i=0; i<pn; i++) {
144869be949aSStefano Zampini     const PetscInt ncols = c_loc->i[i+1] - c_loc->i[i];
144969be949aSStefano Zampini     const PetscInt *cols = c_loc->j + c_loc->i[i];
145069be949aSStefano Zampini     const PetscInt row = rstart + i;
145169be949aSStefano Zampini     ierr = MatSetValues(C,1,&row,ncols,cols,NULL,INSERT_VALUES);CHKERRQ(ierr);
145269be949aSStefano Zampini   }
145369be949aSStefano Zampini   for (i=0; i<con; i++) {
145469be949aSStefano Zampini     const PetscInt ncols = c_oth->i[i+1] - c_oth->i[i];
145569be949aSStefano Zampini     const PetscInt *cols = c_oth->j + c_oth->i[i];
145669be949aSStefano Zampini     const PetscInt row = prmap[i];
145769be949aSStefano Zampini     ierr = MatSetValues(C,1,&row,ncols,cols,NULL,INSERT_VALUES);CHKERRQ(ierr);
145869be949aSStefano Zampini   }
145969be949aSStefano Zampini   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
146069be949aSStefano Zampini   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14610926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
146269be949aSStefano Zampini 
1463912837bbSHong Zhang   /* members in merge */
1464912837bbSHong Zhang   ierr = PetscFree(id_r);CHKERRQ(ierr);
1465912837bbSHong Zhang   ierr = PetscFree(len_r);CHKERRQ(ierr);
1466912837bbSHong Zhang   ierr = PetscFree(buf_ri[0]);CHKERRQ(ierr);
1467912837bbSHong Zhang   ierr = PetscFree(buf_ri);CHKERRQ(ierr);
1468912837bbSHong Zhang   ierr = PetscFree(buf_rj[0]);CHKERRQ(ierr);
1469912837bbSHong Zhang   ierr = PetscFree(buf_rj);CHKERRQ(ierr);
1470912837bbSHong Zhang   ierr = PetscLayoutDestroy(&rowmap);CHKERRQ(ierr);
1471912837bbSHong Zhang 
14724222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
14736718818eSStefano Zampini   C->product->data    = ptap;
14746718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
1475912837bbSHong Zhang   PetscFunctionReturn(0);
1476912837bbSHong Zhang }
1477912837bbSHong Zhang 
1478912837bbSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P,Mat A,Mat C)
1479912837bbSHong Zhang {
1480912837bbSHong Zhang   PetscErrorCode    ierr;
14816718818eSStefano Zampini   Mat_MPIAIJ        *p=(Mat_MPIAIJ*)P->data;
1482669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
14836718818eSStefano Zampini   Mat_APMPI         *ptap;
1484669e9c86SHong Zhang   Mat               A_loc,C_loc,C_oth;
1485912837bbSHong Zhang   PetscInt          i,rstart,rend,cm,ncols,row;
1486912837bbSHong Zhang   const PetscInt    *cols;
1487912837bbSHong Zhang   const PetscScalar *vals;
1488912837bbSHong Zhang 
1489912837bbSHong Zhang   PetscFunctionBegin;
14906718818eSStefano Zampini   MatCheckProduct(C,3);
14916718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
14926718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
14936718818eSStefano Zampini   if (!ptap->A_loc) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
1494912837bbSHong Zhang   ierr = MatZeroEntries(C);CHKERRQ(ierr);
1495912837bbSHong Zhang 
1496912837bbSHong Zhang   if (ptap->reuse == MAT_REUSE_MATRIX) {
1497669e9c86SHong Zhang     /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1498669e9c86SHong Zhang     /* 1) get R = Pd^T, Ro = Po^T */
1499669e9c86SHong Zhang     /*----------------------------*/
1500912837bbSHong Zhang     ierr = MatTranspose_SeqAIJ(p->A,MAT_REUSE_MATRIX,&ptap->Rd);CHKERRQ(ierr);
1501912837bbSHong Zhang     ierr = MatTranspose_SeqAIJ(p->B,MAT_REUSE_MATRIX,&ptap->Ro);CHKERRQ(ierr);
1502669e9c86SHong Zhang 
1503669e9c86SHong Zhang     /* 2) compute numeric A_loc */
1504669e9c86SHong Zhang     /*--------------------------*/
15054ede91e3SHong Zhang     ierr = MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&ptap->A_loc);CHKERRQ(ierr);
1506912837bbSHong Zhang   }
1507912837bbSHong Zhang 
1508669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15094ede91e3SHong Zhang   A_loc = ptap->A_loc;
1510669e9c86SHong Zhang   ierr = ((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd,A_loc,ptap->C_loc);CHKERRQ(ierr);
1511669e9c86SHong Zhang   ierr = ((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro,A_loc,ptap->C_oth);CHKERRQ(ierr);
1512912837bbSHong Zhang   C_loc = ptap->C_loc;
1513912837bbSHong Zhang   C_oth = ptap->C_oth;
1514912837bbSHong Zhang 
151569be949aSStefano Zampini   /* add C_loc and C_oth to C */
1516912837bbSHong Zhang   ierr = MatGetOwnershipRange(C,&rstart,&rend);CHKERRQ(ierr);
1517912837bbSHong Zhang 
1518912837bbSHong Zhang   /* C_loc -> C */
1519912837bbSHong Zhang   cm    = C_loc->rmap->N;
1520912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_loc->data;
1521912837bbSHong Zhang   cols = c_seq->j;
1522912837bbSHong Zhang   vals = c_seq->a;
1523912837bbSHong Zhang   for (i=0; i<cm; i++) {
1524912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1525912837bbSHong Zhang     row = rstart + i;
1526912837bbSHong Zhang     ierr = MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr);
1527912837bbSHong Zhang     cols += ncols; vals += ncols;
1528912837bbSHong Zhang   }
1529912837bbSHong Zhang 
1530912837bbSHong Zhang   /* Co -> C, off-processor part */
1531912837bbSHong Zhang   cm    = C_oth->rmap->N;
1532912837bbSHong Zhang   c_seq = (Mat_SeqAIJ*)C_oth->data;
1533912837bbSHong Zhang   cols  = c_seq->j;
1534912837bbSHong Zhang   vals  = c_seq->a;
1535912837bbSHong Zhang   for (i=0; i<cm; i++) {
1536912837bbSHong Zhang     ncols = c_seq->i[i+1] - c_seq->i[i];
1537912837bbSHong Zhang     row = p->garray[i];
1538912837bbSHong Zhang     ierr = MatSetValues(C,1,&row,ncols,cols,vals,ADD_VALUES);CHKERRQ(ierr);
1539912837bbSHong Zhang     cols += ncols; vals += ncols;
1540912837bbSHong Zhang   }
1541912837bbSHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1542912837bbSHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15430926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
1544912837bbSHong Zhang 
1545912837bbSHong Zhang   ptap->reuse = MAT_REUSE_MATRIX;
1546912837bbSHong Zhang   PetscFunctionReturn(0);
1547912837bbSHong Zhang }
1548912837bbSHong Zhang 
15496da69ca6SHong Zhang PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P,Mat A,Mat C)
1550d6ab1dc0SHong Zhang {
1551d6ab1dc0SHong Zhang   PetscErrorCode      ierr;
1552d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
15536718818eSStefano Zampini   Mat_MPIAIJ          *p =(Mat_MPIAIJ*)P->data;
1554d6ab1dc0SHong Zhang   Mat_SeqAIJ          *pd=(Mat_SeqAIJ*)(p->A)->data,*po=(Mat_SeqAIJ*)(p->B)->data;
15553cdca5ebSHong Zhang   Mat_APMPI           *ptap;
1556e745005bSHong Zhang   PetscInt            *adj;
1557e745005bSHong Zhang   PetscInt            i,j,k,anz,pnz,row,*cj,nexta;
1558e745005bSHong Zhang   MatScalar           *ada,*ca,valtmp;
1559d6ab1dc0SHong Zhang   PetscInt            am=A->rmap->n,cm=C->rmap->n,pon=(p->B)->cmap->n;
1560ce94432eSBarry Smith   MPI_Comm            comm;
1561d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,taga,*len_s;
1562d6ab1dc0SHong Zhang   PetscInt            *owners,proc,nrows,**buf_ri_k,**nextrow,**nextci;
1563d6ab1dc0SHong Zhang   PetscInt            **buf_ri,**buf_rj;
1564d6ab1dc0SHong Zhang   PetscInt            cnz=0,*bj_i,*bi,*bj,bnz,nextcj;  /* bi,bj,ba: local array of C(mpi mat) */
1565d6ab1dc0SHong Zhang   MPI_Request         *s_waits,*r_waits;
1566d6ab1dc0SHong Zhang   MPI_Status          *status;
1567d6ab1dc0SHong Zhang   MatScalar           **abuf_r,*ba_i,*pA,*coa,*ba;
15684e201bd7SHong Zhang   PetscInt            *ai,*aj,*coi,*coj,*poJ,*pdJ;
1569d6ab1dc0SHong Zhang   Mat                 A_loc;
1570d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1571d6ab1dc0SHong Zhang 
1572d6ab1dc0SHong Zhang   PetscFunctionBegin;
15736718818eSStefano Zampini   MatCheckProduct(C,3);
15746718818eSStefano Zampini   ptap = (Mat_APMPI*)C->product->data;
15756718818eSStefano Zampini   if (!ptap) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtAP cannot be computed. Missing data");
15766718818eSStefano Zampini   if (!ptap->A_loc) SETERRQ(PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"PtA cannot be reused. Do not call MatProductClear()");
1577ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
1578d6ab1dc0SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1579d6ab1dc0SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1580d6ab1dc0SHong Zhang 
1581d6ab1dc0SHong Zhang   merge = ptap->merge;
1582d6ab1dc0SHong Zhang 
1583e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1584e745005bSHong Zhang   /*------------------------------------------*/
1585d6ab1dc0SHong Zhang   /* get data from symbolic products */
1586d6ab1dc0SHong Zhang   coi    = merge->coi; coj = merge->coj;
1587854ce69bSBarry Smith   ierr   = PetscCalloc1(coi[pon]+1,&coa);CHKERRQ(ierr);
1588d6ab1dc0SHong Zhang   bi     = merge->bi; bj = merge->bj;
1589d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
15901795a4d1SJed Brown   ierr   = PetscCalloc1(bi[cm]+1,&ba);CHKERRQ(ierr);
1591d6ab1dc0SHong Zhang 
1592d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
1593d6ab1dc0SHong Zhang   A_loc = ptap->A_loc;
1594d6ab1dc0SHong Zhang   ierr  = MatMPIAIJGetLocalMat(A,MAT_REUSE_MATRIX,&A_loc);CHKERRQ(ierr);
1595d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ*)(A_loc)->data;
1596d6ab1dc0SHong Zhang   ai    = a_loc->i;
1597d6ab1dc0SHong Zhang   aj    = a_loc->j;
1598d6ab1dc0SHong Zhang 
1599d6ab1dc0SHong Zhang   for (i=0; i<am; i++) {
1600d6ab1dc0SHong Zhang     anz = ai[i+1] - ai[i];
1601d6ab1dc0SHong Zhang     adj = aj + ai[i];
1602d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1603d6ab1dc0SHong Zhang 
1604d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1605e745005bSHong Zhang     /*-------------------------------------------------------------*/
1606d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1607d6ab1dc0SHong Zhang     pnz = po->i[i+1] - po->i[i];
1608d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1609d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1610d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1611d6ab1dc0SHong Zhang       row = poJ[j];
1612d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1613d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1614e745005bSHong Zhang       /* perform sparse axpy */
1615e745005bSHong Zhang       nexta  = 0;
1616d6ab1dc0SHong Zhang       valtmp = pA[j];
1617e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1618e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1619e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1620e745005bSHong Zhang           nexta++;
1621d6ab1dc0SHong Zhang         }
1622e745005bSHong Zhang       }
1623e745005bSHong Zhang       ierr = PetscLogFlops(2.0*anz);CHKERRQ(ierr);
1624d6ab1dc0SHong Zhang     }
1625d6ab1dc0SHong Zhang 
1626d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1627d6ab1dc0SHong Zhang     pnz = pd->i[i+1] - pd->i[i];
1628d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1629d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1630d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1631d6ab1dc0SHong Zhang       row = pdJ[j];
1632d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1633d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1634e745005bSHong Zhang       /* perform sparse axpy */
1635e745005bSHong Zhang       nexta  = 0;
1636d6ab1dc0SHong Zhang       valtmp = pA[j];
1637e745005bSHong Zhang       for (k=0; nexta<anz; k++) {
1638e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1639e745005bSHong Zhang           ca[k] += valtmp*ada[nexta];
1640e745005bSHong Zhang           nexta++;
1641d6ab1dc0SHong Zhang         }
1642e745005bSHong Zhang       }
1643e745005bSHong Zhang       ierr = PetscLogFlops(2.0*anz);CHKERRQ(ierr);
1644d6ab1dc0SHong Zhang     }
1645d6ab1dc0SHong Zhang   }
1646d6ab1dc0SHong Zhang 
1647d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1648d6ab1dc0SHong Zhang   /*------------------------------------*/
1649d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1650d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1651d6ab1dc0SHong Zhang   len_s  = merge->len_s;
1652d6ab1dc0SHong Zhang   ierr   = PetscCommGetNewTag(comm,&taga);CHKERRQ(ierr);
1653d6ab1dc0SHong Zhang   ierr   = PetscPostIrecvScalar(comm,taga,merge->nrecv,merge->id_r,merge->len_r,&abuf_r,&r_waits);CHKERRQ(ierr);
1654d6ab1dc0SHong Zhang 
1655dcca6d9dSJed Brown   ierr = PetscMalloc2(merge->nsend+1,&s_waits,size,&status);CHKERRQ(ierr);
1656d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1657d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1658d6ab1dc0SHong Zhang     i    = merge->owners_co[proc];
1659d6ab1dc0SHong Zhang     ierr = MPI_Isend(coa+coi[i],len_s[proc],MPIU_MATSCALAR,proc,taga,comm,s_waits+k);CHKERRQ(ierr);
1660d6ab1dc0SHong Zhang     k++;
1661d6ab1dc0SHong Zhang   }
1662d6ab1dc0SHong Zhang   if (merge->nrecv) {ierr = MPI_Waitall(merge->nrecv,r_waits,status);CHKERRQ(ierr);}
1663d6ab1dc0SHong Zhang   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,s_waits,status);CHKERRQ(ierr);}
1664d6ab1dc0SHong Zhang 
1665d6ab1dc0SHong Zhang   ierr = PetscFree2(s_waits,status);CHKERRQ(ierr);
1666d6ab1dc0SHong Zhang   ierr = PetscFree(r_waits);CHKERRQ(ierr);
1667d6ab1dc0SHong Zhang   ierr = PetscFree(coa);CHKERRQ(ierr);
1668d6ab1dc0SHong Zhang 
1669d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
1670d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
1671dcca6d9dSJed Brown   ierr = PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci);CHKERRQ(ierr);
1672d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
1673e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1674d6ab1dc0SHong Zhang     nrows       = *(buf_ri_k[k]);
1675d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k]+1;  /* next row number of k-th recved i-structure */
1676d6ab1dc0SHong Zhang     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* poins to the next i-structure of k-th recved i-structure  */
1677d6ab1dc0SHong Zhang   }
1678d6ab1dc0SHong Zhang 
1679d6ab1dc0SHong Zhang   for (i=0; i<cm; i++) {
1680d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1681d6ab1dc0SHong Zhang     bj_i = bj + bi[i];  /* col indices of the i-th row of C */
1682d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1683d6ab1dc0SHong Zhang     bnz  = bi[i+1] - bi[i];
1684d6ab1dc0SHong Zhang     /* add received vals into ba */
1685d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
1686d6ab1dc0SHong Zhang       /* i-th row */
1687d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1688d6ab1dc0SHong Zhang         cnz    = *(nextci[k]+1) - *nextci[k];
1689d6ab1dc0SHong Zhang         cj     = buf_rj[k] + *(nextci[k]);
1690d6ab1dc0SHong Zhang         ca     = abuf_r[k] + *(nextci[k]);
1691d6ab1dc0SHong Zhang         nextcj = 0;
1692d6ab1dc0SHong Zhang         for (j=0; nextcj<cnz; j++) {
1693d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1694d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1695d6ab1dc0SHong Zhang           }
1696d6ab1dc0SHong Zhang         }
1697d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
1698d6ab1dc0SHong Zhang         ierr = PetscLogFlops(2.0*cnz);CHKERRQ(ierr);
1699d6ab1dc0SHong Zhang       }
1700d6ab1dc0SHong Zhang     }
1701d6ab1dc0SHong Zhang     ierr = MatSetValues(C,1,&row,bnz,bj_i,ba_i,INSERT_VALUES);CHKERRQ(ierr);
1702d6ab1dc0SHong Zhang   }
1703d6ab1dc0SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1704d6ab1dc0SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1705d6ab1dc0SHong Zhang 
1706d6ab1dc0SHong Zhang   ierr = PetscFree(ba);CHKERRQ(ierr);
1707d6ab1dc0SHong Zhang   ierr = PetscFree(abuf_r[0]);CHKERRQ(ierr);
1708d6ab1dc0SHong Zhang   ierr = PetscFree(abuf_r);CHKERRQ(ierr);
1709d6ab1dc0SHong Zhang   ierr = PetscFree3(buf_ri_k,nextrow,nextci);CHKERRQ(ierr);
1710d6ab1dc0SHong Zhang   PetscFunctionReturn(0);
1711d6ab1dc0SHong Zhang }
1712d6ab1dc0SHong Zhang 
17134222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P,Mat A,PetscReal fill,Mat C)
1714d6ab1dc0SHong Zhang {
1715d6ab1dc0SHong Zhang   PetscErrorCode      ierr;
17164222ddf1SHong Zhang   Mat                 A_loc,POt,PDt;
17173cdca5ebSHong Zhang   Mat_APMPI           *ptap;
17180298fd71SBarry Smith   PetscFreeSpaceList  free_space=NULL,current_space=NULL;
17196718818eSStefano Zampini   Mat_MPIAIJ          *p=(Mat_MPIAIJ*)P->data,*a=(Mat_MPIAIJ*)A->data;
1720d6ab1dc0SHong Zhang   PetscInt            *pdti,*pdtj,*poti,*potj,*ptJ;
1721d6ab1dc0SHong Zhang   PetscInt            nnz;
1722d6ab1dc0SHong Zhang   PetscInt            *lnk,*owners_co,*coi,*coj,i,k,pnz,row;
1723d6ab1dc0SHong Zhang   PetscInt            am  =A->rmap->n,pn=P->cmap->n;
1724ce94432eSBarry Smith   MPI_Comm            comm;
1725d6ab1dc0SHong Zhang   PetscMPIInt         size,rank,tagi,tagj,*len_si,*len_s,*len_ri;
1726d6ab1dc0SHong Zhang   PetscInt            **buf_rj,**buf_ri,**buf_ri_k;
1727d6ab1dc0SHong Zhang   PetscInt            len,proc,*dnz,*onz,*owners;
1728d6ab1dc0SHong Zhang   PetscInt            nzi,*bi,*bj;
1729d6ab1dc0SHong Zhang   PetscInt            nrows,*buf_s,*buf_si,*buf_si_i,**nextrow,**nextci;
1730d6ab1dc0SHong Zhang   MPI_Request         *swaits,*rwaits;
1731d6ab1dc0SHong Zhang   MPI_Status          *sstatus,rstatus;
1732d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1733d6ab1dc0SHong Zhang   PetscInt            *ai,*aj,*Jptr,anz,*prmap=p->garray,pon,nspacedouble=0,j;
1734d6ab1dc0SHong Zhang   PetscReal           afill  =1.0,afill_tmp;
17354b38b95cSHong Zhang   PetscInt            rstart = P->cmap->rstart,rmax,aN=A->cmap->N,Armax;
1736d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc,*pdt,*pot;
17370acc65b4SHong Zhang   PetscTable          ta;
1738b92f168fSBarry Smith   MatType             mtype;
1739d6ab1dc0SHong Zhang 
1740d6ab1dc0SHong Zhang   PetscFunctionBegin;
1741ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
1742d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17436c4ed002SBarry Smith   if (A->rmap->rstart != P->rmap->rstart || A->rmap->rend != P->rmap->rend) SETERRQ4(comm,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != P (%D,%D)",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
1744d6ab1dc0SHong Zhang 
1745d6ab1dc0SHong Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
1746d6ab1dc0SHong Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
1747d6ab1dc0SHong Zhang 
17483cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
1749b00a9115SJed Brown   ierr = PetscNew(&ptap);CHKERRQ(ierr);
1750d6ab1dc0SHong Zhang 
1751d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
1752d6ab1dc0SHong Zhang   ierr = MatMPIAIJGetLocalMat(A,MAT_INITIAL_MATRIX,&A_loc);CHKERRQ(ierr);
17532205254eSKarl Rupp 
1754d6ab1dc0SHong Zhang   ptap->A_loc = A_loc;
1755d6ab1dc0SHong Zhang   a_loc       = (Mat_SeqAIJ*)(A_loc)->data;
1756d6ab1dc0SHong Zhang   ai          = a_loc->i;
1757d6ab1dc0SHong Zhang   aj          = a_loc->j;
1758d6ab1dc0SHong Zhang 
1759d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
1760d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
1761d6ab1dc0SHong Zhang   ierr = MatTransposeSymbolic_SeqAIJ(p->A,&PDt);CHKERRQ(ierr);
1762d6ab1dc0SHong Zhang   pdt  = (Mat_SeqAIJ*)PDt->data;
1763d6ab1dc0SHong Zhang   pdti = pdt->i; pdtj = pdt->j;
1764d6ab1dc0SHong Zhang 
1765d6ab1dc0SHong Zhang   ierr = MatTransposeSymbolic_SeqAIJ(p->B,&POt);CHKERRQ(ierr);
1766d6ab1dc0SHong Zhang   pot  = (Mat_SeqAIJ*)POt->data;
1767d6ab1dc0SHong Zhang   poti = pot->i; potj = pot->j;
1768d6ab1dc0SHong Zhang 
1769d6ab1dc0SHong Zhang   /* then, compute symbolic Co = (p->B)^T*A */
1770d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1771d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
1772854ce69bSBarry Smith   ierr   = PetscMalloc1(pon+1,&coi);CHKERRQ(ierr);
1773d6ab1dc0SHong Zhang   coi[0] = 0;
1774d6ab1dc0SHong Zhang 
1775d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1776f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(poti[pon],ai[am]));
1777a2ea699eSBarry Smith   ierr          = PetscFreeSpaceGet(nnz,&free_space);CHKERRQ(ierr);
1778d6ab1dc0SHong Zhang   current_space = free_space;
177919f0e57aSHong Zhang 
1780d6ab1dc0SHong Zhang   /* create and initialize a linked list */
178133ba5e2fSHong Zhang   ierr = PetscTableCreate(A->cmap->n + a->B->cmap->N,aN,&ta);CHKERRQ(ierr);
17824b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc,am,ta);
17830acc65b4SHong Zhang   ierr = PetscTableGetCount(ta,&Armax);CHKERRQ(ierr);
178433ba5e2fSHong Zhang 
17850acc65b4SHong Zhang   ierr = PetscLLCondensedCreate_Scalable(Armax,&lnk);CHKERRQ(ierr);
1786d6ab1dc0SHong Zhang 
1787d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1788d6ab1dc0SHong Zhang     pnz = poti[i+1] - poti[i];
1789d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1790d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1791d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1792d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
1793d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1794d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
1795d6ab1dc0SHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk);CHKERRQ(ierr);
1796d6ab1dc0SHong Zhang     }
1797d6ab1dc0SHong Zhang     nnz = lnk[0];
1798d6ab1dc0SHong Zhang 
1799d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1800d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
1801f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
1802d6ab1dc0SHong Zhang       nspacedouble++;
1803d6ab1dc0SHong Zhang     }
1804d6ab1dc0SHong Zhang 
1805d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
1806d6ab1dc0SHong Zhang     ierr = PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk);CHKERRQ(ierr);
18072205254eSKarl Rupp 
1808d6ab1dc0SHong Zhang     current_space->array           += nnz;
1809d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
1810d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18112205254eSKarl Rupp 
1812d6ab1dc0SHong Zhang     coi[i+1] = coi[i] + nnz;
1813d6ab1dc0SHong Zhang   }
1814d6ab1dc0SHong Zhang 
1815854ce69bSBarry Smith   ierr = PetscMalloc1(coi[pon]+1,&coj);CHKERRQ(ierr);
1816d6ab1dc0SHong Zhang   ierr = PetscFreeSpaceContiguous(&free_space,coj);CHKERRQ(ierr);
18170acc65b4SHong Zhang   ierr = PetscLLCondensedDestroy_Scalable(lnk);CHKERRQ(ierr); /* must destroy to get a new one for C */
18182205254eSKarl Rupp 
1819118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon]/(poti[pon] + ai[am]+1);
1820d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1821d6ab1dc0SHong Zhang 
1822d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1823d6ab1dc0SHong Zhang   /*----------------------------------------------*/
1824d6ab1dc0SHong Zhang   /* determine row ownership */
1825b00a9115SJed Brown   ierr = PetscNew(&merge);CHKERRQ(ierr);
1826d6ab1dc0SHong Zhang   ierr = PetscLayoutCreate(comm,&merge->rowmap);CHKERRQ(ierr);
18272205254eSKarl Rupp 
1828d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1829d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18302205254eSKarl Rupp 
1831d6ab1dc0SHong Zhang   ierr   = PetscLayoutSetUp(merge->rowmap);CHKERRQ(ierr);
1832d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1833d6ab1dc0SHong Zhang 
1834d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18351795a4d1SJed Brown   ierr = PetscCalloc1(size,&len_si);CHKERRQ(ierr);
1836580bdb30SBarry Smith   ierr = PetscCalloc1(size,&merge->len_s);CHKERRQ(ierr);
18372205254eSKarl Rupp 
1838d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1839d6ab1dc0SHong Zhang   merge->nsend = 0;
1840d6ab1dc0SHong Zhang 
1841854ce69bSBarry Smith   ierr = PetscMalloc1(size+2,&owners_co);CHKERRQ(ierr);
1842d6ab1dc0SHong Zhang 
1843d6ab1dc0SHong Zhang   proc = 0;
1844d6ab1dc0SHong Zhang   for (i=0; i<pon; i++) {
1845d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc+1]) proc++;
1846d6ab1dc0SHong Zhang     len_si[proc]++;  /* num of rows in Co to be sent to [proc] */
1847d6ab1dc0SHong Zhang     len_s[proc] += coi[i+1] - coi[i];
1848d6ab1dc0SHong Zhang   }
1849d6ab1dc0SHong Zhang 
1850d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1851d6ab1dc0SHong Zhang   owners_co[0] = 0;
1852d6ab1dc0SHong Zhang   for (proc=0; proc<size; proc++) {
1853d6ab1dc0SHong Zhang     owners_co[proc+1] = owners_co[proc] + len_si[proc];
1854d6ab1dc0SHong Zhang     if (len_si[proc]) {
1855d6ab1dc0SHong Zhang       merge->nsend++;
1856d6ab1dc0SHong Zhang       len_si[proc] = 2*(len_si[proc] + 1);
1857d6ab1dc0SHong Zhang       len         += len_si[proc];
1858d6ab1dc0SHong Zhang     }
1859d6ab1dc0SHong Zhang   }
1860d6ab1dc0SHong Zhang 
1861d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18620298fd71SBarry Smith   ierr = PetscGatherNumberOfMessages(comm,NULL,len_s,&merge->nrecv);CHKERRQ(ierr);
1863d6ab1dc0SHong Zhang   ierr = PetscGatherMessageLengths2(comm,merge->nsend,merge->nrecv,len_s,len_si,&merge->id_r,&merge->len_r,&len_ri);CHKERRQ(ierr);
1864d6ab1dc0SHong Zhang 
1865d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
1866d6ab1dc0SHong Zhang   ierr = PetscCommGetNewTag(comm,&tagj);CHKERRQ(ierr);
1867d6ab1dc0SHong Zhang   ierr = PetscPostIrecvInt(comm,tagj,merge->nrecv,merge->id_r,merge->len_r,&buf_rj,&rwaits);CHKERRQ(ierr);
1868854ce69bSBarry Smith   ierr = PetscMalloc1(merge->nsend+1,&swaits);CHKERRQ(ierr);
1869d6ab1dc0SHong Zhang   for (proc=0, k=0; proc<size; proc++) {
1870d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1871d6ab1dc0SHong Zhang     i    = owners_co[proc];
1872d6ab1dc0SHong Zhang     ierr = MPI_Isend(coj+coi[i],len_s[proc],MPIU_INT,proc,tagj,comm,swaits+k);CHKERRQ(ierr);
1873d6ab1dc0SHong Zhang     k++;
1874d6ab1dc0SHong Zhang   }
1875d6ab1dc0SHong Zhang 
1876d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
1877785e854fSJed Brown   ierr = PetscMalloc1(size,&sstatus);CHKERRQ(ierr);
1878d6ab1dc0SHong Zhang   for (i=0; i<merge->nrecv; i++) {
1879ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
1880c280ed6aSJed Brown     ierr = MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus);CHKERRQ(ierr);
1881d6ab1dc0SHong Zhang   }
1882d6ab1dc0SHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1883d6ab1dc0SHong Zhang   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,swaits,sstatus);CHKERRQ(ierr);}
1884d6ab1dc0SHong Zhang 
18850acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1886c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
18870acc65b4SHong Zhang   for (k=0; k<merge->nrecv; k++) {/* k-th received message */
18880acc65b4SHong Zhang     Jptr = buf_rj[k];
18890acc65b4SHong Zhang     for (j=0; j<merge->len_r[k]; j++) {
18900acc65b4SHong Zhang       ierr = PetscTableAdd(ta,*(Jptr+j)+1,1,INSERT_VALUES);CHKERRQ(ierr);
18910acc65b4SHong Zhang     }
18920acc65b4SHong Zhang   }
18930acc65b4SHong Zhang   ierr = PetscTableGetCount(ta,&Armax);CHKERRQ(ierr);
189433ba5e2fSHong Zhang   /* printf("Armax %d, an %d + Bn %d = %d, aN %d\n",Armax,A->cmap->n,a->B->cmap->N,A->cmap->n+a->B->cmap->N,aN); */
18950acc65b4SHong Zhang 
1896d6ab1dc0SHong Zhang   /* send and recv coi */
1897d6ab1dc0SHong Zhang   /*-------------------*/
1898d6ab1dc0SHong Zhang   ierr   = PetscCommGetNewTag(comm,&tagi);CHKERRQ(ierr);
1899d6ab1dc0SHong Zhang   ierr   = PetscPostIrecvInt(comm,tagi,merge->nrecv,merge->id_r,len_ri,&buf_ri,&rwaits);CHKERRQ(ierr);
1900854ce69bSBarry Smith   ierr   = PetscMalloc1(len+1,&buf_s);CHKERRQ(ierr);
1901d6ab1dc0SHong Zhang   buf_si = buf_s;  /* points to the beginning of k-th msg to be sent */
1902d6ab1dc0SHong Zhang   for (proc=0,k=0; proc<size; proc++) {
1903d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1904d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1905d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1906d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1907d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1908d6ab1dc0SHong Zhang     */
1909d6ab1dc0SHong Zhang     /*-------------------------------------------*/
1910d6ab1dc0SHong Zhang     nrows       = len_si[proc]/2 - 1;
1911d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows+1;
1912d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1913d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1914d6ab1dc0SHong Zhang     nrows       = 0;
1915d6ab1dc0SHong Zhang     for (i=owners_co[proc]; i<owners_co[proc+1]; i++) {
1916d6ab1dc0SHong Zhang       nzi               = coi[i+1] - coi[i];
1917d6ab1dc0SHong Zhang       buf_si_i[nrows+1] = buf_si_i[nrows] + nzi;  /* i-structure */
1918d6ab1dc0SHong Zhang       buf_si[nrows+1]   = prmap[i] -owners[proc]; /* local row index */
1919d6ab1dc0SHong Zhang       nrows++;
1920d6ab1dc0SHong Zhang     }
1921d6ab1dc0SHong Zhang     ierr = MPI_Isend(buf_si,len_si[proc],MPIU_INT,proc,tagi,comm,swaits+k);CHKERRQ(ierr);
1922d6ab1dc0SHong Zhang     k++;
1923d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1924d6ab1dc0SHong Zhang   }
1925d6ab1dc0SHong Zhang   i = merge->nrecv;
1926d6ab1dc0SHong Zhang   while (i--) {
1927ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
1928c280ed6aSJed Brown     ierr = MPI_Waitany(merge->nrecv,rwaits,&icompleted,&rstatus);CHKERRQ(ierr);
1929d6ab1dc0SHong Zhang   }
1930d6ab1dc0SHong Zhang   ierr = PetscFree(rwaits);CHKERRQ(ierr);
1931d6ab1dc0SHong Zhang   if (merge->nsend) {ierr = MPI_Waitall(merge->nsend,swaits,sstatus);CHKERRQ(ierr);}
1932d6ab1dc0SHong Zhang   ierr = PetscFree(len_si);CHKERRQ(ierr);
1933d6ab1dc0SHong Zhang   ierr = PetscFree(len_ri);CHKERRQ(ierr);
1934d6ab1dc0SHong Zhang   ierr = PetscFree(swaits);CHKERRQ(ierr);
1935d6ab1dc0SHong Zhang   ierr = PetscFree(sstatus);CHKERRQ(ierr);
1936d6ab1dc0SHong Zhang   ierr = PetscFree(buf_s);CHKERRQ(ierr);
1937d6ab1dc0SHong Zhang 
1938d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1939d6ab1dc0SHong Zhang   /*------------------------------------------*/
1940d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
1941854ce69bSBarry Smith   ierr  = PetscMalloc1(pn+1,&bi);CHKERRQ(ierr);
1942d6ab1dc0SHong Zhang   bi[0] = 0;
1943d6ab1dc0SHong Zhang 
1944d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1945f91af8c7SBarry Smith   nnz           = PetscRealIntMultTruncate(fill,PetscIntSumTruncate(pdti[pn],PetscIntSumTruncate(poti[pon],ai[am])));
1946a2ea699eSBarry Smith   ierr          = PetscFreeSpaceGet(nnz,&free_space);CHKERRQ(ierr);
1947d6ab1dc0SHong Zhang   current_space = free_space;
1948d6ab1dc0SHong Zhang 
1949dcca6d9dSJed Brown   ierr = PetscMalloc3(merge->nrecv,&buf_ri_k,merge->nrecv,&nextrow,merge->nrecv,&nextci);CHKERRQ(ierr);
1950d6ab1dc0SHong Zhang   for (k=0; k<merge->nrecv; k++) {
1951d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1952d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1953d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;  /* next row number of k-th recved i-structure */
19542d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1955d6ab1dc0SHong Zhang   }
1956d6ab1dc0SHong Zhang 
19570acc65b4SHong Zhang   ierr = PetscLLCondensedCreate_Scalable(Armax,&lnk);CHKERRQ(ierr);
1958d6ab1dc0SHong Zhang   ierr = MatPreallocateInitialize(comm,pn,A->cmap->n,dnz,onz);CHKERRQ(ierr);
1959d6ab1dc0SHong Zhang   rmax = 0;
1960d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
1961d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1962d6ab1dc0SHong Zhang     pnz = pdti[i+1] - pdti[i];
1963d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1964d6ab1dc0SHong Zhang     for (j=0; j<pnz; j++) {
1965d6ab1dc0SHong Zhang       row  = ptJ[j];  /* row of AP == col of Pt */
1966d6ab1dc0SHong Zhang       anz  = ai[row+1] - ai[row];
1967d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1968d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
1969d6ab1dc0SHong Zhang       ierr = PetscLLCondensedAddSorted_Scalable(anz,Jptr,lnk);CHKERRQ(ierr);
1970d6ab1dc0SHong Zhang     }
1971d6ab1dc0SHong Zhang 
1972d6ab1dc0SHong Zhang     /* add received col data into lnk */
1973d6ab1dc0SHong Zhang     for (k=0; k<merge->nrecv; k++) { /* k-th received message */
1974d6ab1dc0SHong Zhang       if (i == *nextrow[k]) { /* i-th row */
1975d6ab1dc0SHong Zhang         nzi  = *(nextci[k]+1) - *nextci[k];
1976d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
1977d6ab1dc0SHong Zhang         ierr = PetscLLCondensedAddSorted_Scalable(nzi,Jptr,lnk);CHKERRQ(ierr);
1978d6ab1dc0SHong Zhang         nextrow[k]++; nextci[k]++;
1979d6ab1dc0SHong Zhang       }
1980d6ab1dc0SHong Zhang     }
1981d6ab1dc0SHong Zhang     nnz = lnk[0];
1982d6ab1dc0SHong Zhang 
1983d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
1984d6ab1dc0SHong Zhang     if (current_space->local_remaining<nnz) {
1985f91af8c7SBarry Smith       ierr = PetscFreeSpaceGet(PetscIntSumTruncate(nnz,current_space->total_array_size),&current_space);CHKERRQ(ierr);
1986d6ab1dc0SHong Zhang       nspacedouble++;
1987d6ab1dc0SHong Zhang     }
1988d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
1989d6ab1dc0SHong Zhang     ierr = PetscLLCondensedClean_Scalable(nnz,current_space->array,lnk);CHKERRQ(ierr);
1990d6ab1dc0SHong Zhang     ierr = MatPreallocateSet(i+owners[rank],nnz,current_space->array,dnz,onz);CHKERRQ(ierr);
19912205254eSKarl Rupp 
1992d6ab1dc0SHong Zhang     current_space->array           += nnz;
1993d6ab1dc0SHong Zhang     current_space->local_used      += nnz;
1994d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
19952205254eSKarl Rupp 
1996d6ab1dc0SHong Zhang     bi[i+1] = bi[i] + nnz;
1997d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
1998d6ab1dc0SHong Zhang   }
1999f671be37SHong Zhang   ierr = PetscFree3(buf_ri_k,nextrow,nextci);CHKERRQ(ierr);
2000d6ab1dc0SHong Zhang 
2001854ce69bSBarry Smith   ierr      = PetscMalloc1(bi[pn]+1,&bj);CHKERRQ(ierr);
2002d6ab1dc0SHong Zhang   ierr      = PetscFreeSpaceContiguous(&free_space,bj);CHKERRQ(ierr);
2003118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn]/(pdti[pn] + poti[pon] + ai[am]+1);
2004d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
2005d6ab1dc0SHong Zhang   ierr = PetscLLCondensedDestroy_Scalable(lnk);CHKERRQ(ierr);
20060acc65b4SHong Zhang   ierr = PetscTableDestroy(&ta);CHKERRQ(ierr);
20070acc65b4SHong Zhang 
2008d6ab1dc0SHong Zhang   ierr = MatDestroy(&POt);CHKERRQ(ierr);
2009d6ab1dc0SHong Zhang   ierr = MatDestroy(&PDt);CHKERRQ(ierr);
2010d6ab1dc0SHong Zhang 
20114222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20124222ddf1SHong Zhang   /*-------------------------------------------------------------------------------*/
20134222ddf1SHong Zhang   ierr = MatSetSizes(C,pn,A->cmap->n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
20144222ddf1SHong Zhang   ierr = MatSetBlockSizes(C,PetscAbs(P->cmap->bs),PetscAbs(A->cmap->bs));CHKERRQ(ierr);
2015b92f168fSBarry Smith   ierr = MatGetType(A,&mtype);CHKERRQ(ierr);
20164222ddf1SHong Zhang   ierr = MatSetType(C,mtype);CHKERRQ(ierr);
20174222ddf1SHong Zhang   ierr = MatMPIAIJSetPreallocation(C,0,dnz,0,onz);CHKERRQ(ierr);
2018d6ab1dc0SHong Zhang   ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
20194222ddf1SHong Zhang   ierr = MatSetBlockSize(C,1);CHKERRQ(ierr);
202069be949aSStefano Zampini   ierr = MatSetOption(C,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE);CHKERRQ(ierr);
2021d6ab1dc0SHong Zhang   for (i=0; i<pn; i++) {
2022d6ab1dc0SHong Zhang     row  = i + rstart;
2023d6ab1dc0SHong Zhang     nnz  = bi[i+1] - bi[i];
2024d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20254222ddf1SHong Zhang     ierr = MatSetValues(C,1,&row,nnz,Jptr,NULL,INSERT_VALUES);CHKERRQ(ierr);
2026d6ab1dc0SHong Zhang   }
20274222ddf1SHong Zhang   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20284222ddf1SHong Zhang   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
20290926fe31SStefano Zampini   ierr = MatSetOption(C,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2030d6ab1dc0SHong Zhang   merge->bi        = bi;
2031d6ab1dc0SHong Zhang   merge->bj        = bj;
2032d6ab1dc0SHong Zhang   merge->coi       = coi;
2033d6ab1dc0SHong Zhang   merge->coj       = coj;
2034d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2035d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2036d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2037d6ab1dc0SHong Zhang 
20384222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20396718818eSStefano Zampini   C->product->data    = ptap;
20406718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
2041d6ab1dc0SHong Zhang   ptap->merge         = merge;
2042a560ef98SHong Zhang 
20434222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2044f96d37fcSHong Zhang 
2045f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2046f96d37fcSHong Zhang   if (bi[pn] != 0) {
20474222ddf1SHong Zhang     ierr = PetscInfo3(C,"Reallocs %D; Fill ratio: given %g needed %g.\n",nspacedouble,(double)fill,(double)afill);CHKERRQ(ierr);
20484222ddf1SHong Zhang     ierr = PetscInfo1(C,"Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n",(double)afill);CHKERRQ(ierr);
2049f96d37fcSHong Zhang   } else {
20504222ddf1SHong Zhang     ierr = PetscInfo(C,"Empty matrix product\n");CHKERRQ(ierr);
2051f96d37fcSHong Zhang   }
2052f96d37fcSHong Zhang #endif
2053f96d37fcSHong Zhang   PetscFunctionReturn(0);
2054f96d37fcSHong Zhang }
20554222ddf1SHong Zhang 
20564222ddf1SHong Zhang /* ---------------------------------------------------------------- */
20574222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
20584222ddf1SHong Zhang {
20594222ddf1SHong Zhang   PetscErrorCode ierr;
20604222ddf1SHong Zhang   Mat_Product    *product = C->product;
20614222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
20624222ddf1SHong Zhang   PetscReal      fill=product->fill;
20634222ddf1SHong Zhang   PetscBool      flg;
20644222ddf1SHong Zhang 
20654222ddf1SHong Zhang   PetscFunctionBegin;
20664222ddf1SHong Zhang   /* scalable */
20674222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"scalable",&flg);CHKERRQ(ierr);
20684222ddf1SHong Zhang   if (flg) {
20694222ddf1SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);
20704222ddf1SHong Zhang     goto next;
20714222ddf1SHong Zhang   }
20724222ddf1SHong Zhang 
20734222ddf1SHong Zhang   /* nonscalable */
20744222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"nonscalable",&flg);CHKERRQ(ierr);
20754222ddf1SHong Zhang   if (flg) {
20764222ddf1SHong Zhang     ierr = MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A,B,fill,C);CHKERRQ(ierr);
20774222ddf1SHong Zhang     goto next;
20784222ddf1SHong Zhang   }
20794222ddf1SHong Zhang 
20804222ddf1SHong Zhang   /* matmatmult */
20814222ddf1SHong Zhang   ierr = PetscStrcmp(product->alg,"at*b",&flg);CHKERRQ(ierr);
20824222ddf1SHong Zhang   if (flg) {
20834222ddf1SHong Zhang     Mat       At;
20844222ddf1SHong Zhang     Mat_APMPI *ptap;
20854222ddf1SHong Zhang 
20866718818eSStefano Zampini     ierr = MatTranspose(A,MAT_INITIAL_MATRIX,&At);CHKERRQ(ierr);
20874222ddf1SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(At,B,fill,C);CHKERRQ(ierr);
20886718818eSStefano Zampini     ptap = (Mat_APMPI*)C->product->data;
20894222ddf1SHong Zhang     if (ptap) {
20904222ddf1SHong Zhang       ptap->Pt = At;
20916718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
20924222ddf1SHong Zhang     }
20934222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
20944222ddf1SHong Zhang     goto next;
20954222ddf1SHong Zhang   }
20964222ddf1SHong Zhang 
20974222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatProduct type is not supported");
20984222ddf1SHong Zhang 
20994222ddf1SHong Zhang next:
21004222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21014222ddf1SHong Zhang   PetscFunctionReturn(0);
21024222ddf1SHong Zhang }
21034222ddf1SHong Zhang 
21044222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21054222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
21064222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
21074222ddf1SHong Zhang {
21084222ddf1SHong Zhang   PetscErrorCode ierr;
21094222ddf1SHong Zhang   Mat_Product    *product = C->product;
21104222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21114222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21124222ddf1SHong Zhang   const char     *algTypes[4] = {"scalable","nonscalable","seqmpi","hypre"};
21134222ddf1SHong Zhang   PetscInt       nalg = 4;
21144222ddf1SHong Zhang #else
21154222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","nonscalable","seqmpi"};
21164222ddf1SHong Zhang   PetscInt       nalg = 3;
21174222ddf1SHong Zhang #endif
21184222ddf1SHong Zhang   PetscInt       alg = 1; /* set nonscalable algorithm as default */
21194222ddf1SHong Zhang   PetscBool      flg;
21204222ddf1SHong Zhang   MPI_Comm       comm;
21214222ddf1SHong Zhang 
21224222ddf1SHong Zhang   PetscFunctionBegin;
21234222ddf1SHong Zhang   /* Check matrix local sizes */
21244222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
21254222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend);
21264222ddf1SHong Zhang 
21274222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21284222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
21294222ddf1SHong Zhang   if (flg) {
21304222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
21314222ddf1SHong Zhang 
21324222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21334222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21344222ddf1SHong Zhang       MatInfo     Ainfo,Binfo;
21354222ddf1SHong Zhang       PetscInt    nz_local;
21364222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
21374222ddf1SHong Zhang 
21384222ddf1SHong Zhang       ierr = MatGetInfo(A,MAT_LOCAL,&Ainfo);CHKERRQ(ierr);
21394222ddf1SHong Zhang       ierr = MatGetInfo(B,MAT_LOCAL,&Binfo);CHKERRQ(ierr);
21404222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21414222ddf1SHong Zhang 
21424222ddf1SHong Zhang       if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
21434222ddf1SHong Zhang       ierr = MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr);
21444222ddf1SHong Zhang 
21454222ddf1SHong Zhang       if (alg_scalable) {
21464222ddf1SHong Zhang         alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
21474222ddf1SHong Zhang         ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
21484222ddf1SHong Zhang         ierr = PetscInfo2(B,"Use scalable algorithm, BN %D, fill*nz_allocated %g\n",B->cmap->N,product->fill*nz_local);CHKERRQ(ierr);
21494222ddf1SHong Zhang       }
21504222ddf1SHong Zhang     }
21514222ddf1SHong Zhang   }
21524222ddf1SHong Zhang 
21534222ddf1SHong Zhang   /* Get runtime option */
21544222ddf1SHong Zhang   if (product->api_user) {
21554222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMult","Mat");CHKERRQ(ierr);
21564222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmatmult_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
21574222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
21584222ddf1SHong Zhang   } else {
21594222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AB","Mat");CHKERRQ(ierr);
21604222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_ab_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
21614222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
21624222ddf1SHong Zhang   }
21634222ddf1SHong Zhang   if (flg) {
21644222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
21654222ddf1SHong Zhang   }
21664222ddf1SHong Zhang 
21674222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
21684222ddf1SHong Zhang   PetscFunctionReturn(0);
21694222ddf1SHong Zhang }
21704222ddf1SHong Zhang 
21714222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
21724222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
21734222ddf1SHong Zhang {
21744222ddf1SHong Zhang   PetscErrorCode ierr;
21754222ddf1SHong Zhang   Mat_Product    *product = C->product;
21764222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
21774222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","nonscalable","at*b"};
21784222ddf1SHong Zhang   PetscInt       nalg = 3;
21794222ddf1SHong Zhang   PetscInt       alg = 1; /* set default algorithm  */
21804222ddf1SHong Zhang   PetscBool      flg;
21814222ddf1SHong Zhang   MPI_Comm       comm;
21824222ddf1SHong Zhang 
21834222ddf1SHong Zhang   PetscFunctionBegin;
21844222ddf1SHong Zhang   /* Check matrix local sizes */
21854222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
21864222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A (%D, %D) != B (%D,%D)",A->rmap->rstart,A->rmap->rend,B->rmap->rstart,B->rmap->rend);
21874222ddf1SHong Zhang 
21884222ddf1SHong Zhang   /* Set default algorithm */
21894222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
21904222ddf1SHong Zhang   if (flg) {
21914222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
21924222ddf1SHong Zhang   }
21934222ddf1SHong Zhang 
21944222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21954222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21964222ddf1SHong Zhang     MatInfo     Ainfo,Binfo;
21974222ddf1SHong Zhang     PetscInt    nz_local;
21984222ddf1SHong Zhang     PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
21994222ddf1SHong Zhang 
22004222ddf1SHong Zhang     ierr = MatGetInfo(A,MAT_LOCAL,&Ainfo);CHKERRQ(ierr);
22014222ddf1SHong Zhang     ierr = MatGetInfo(B,MAT_LOCAL,&Binfo);CHKERRQ(ierr);
22024222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22034222ddf1SHong Zhang 
22044222ddf1SHong Zhang     if (B->cmap->N > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22054222ddf1SHong Zhang     ierr = MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr);
22064222ddf1SHong Zhang 
22074222ddf1SHong Zhang     if (alg_scalable) {
22084222ddf1SHong Zhang       alg  = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22094222ddf1SHong Zhang       ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22104222ddf1SHong Zhang       ierr = PetscInfo2(B,"Use scalable algorithm, BN %D, fill*nz_allocated %g\n",B->cmap->N,product->fill*nz_local);CHKERRQ(ierr);
22114222ddf1SHong Zhang     }
22124222ddf1SHong Zhang   }
22134222ddf1SHong Zhang 
22144222ddf1SHong Zhang   /* Get runtime option */
22154222ddf1SHong Zhang   if (product->api_user) {
22164222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatTransposeMatMult","Mat");CHKERRQ(ierr);
22174222ddf1SHong Zhang     ierr = PetscOptionsEList("-mattransposematmult_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22184222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22194222ddf1SHong Zhang   } else {
22204222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AtB","Mat");CHKERRQ(ierr);
22214222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_atb_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22224222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22234222ddf1SHong Zhang   }
22244222ddf1SHong Zhang   if (flg) {
22254222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22264222ddf1SHong Zhang   }
22274222ddf1SHong Zhang 
22284222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22294222ddf1SHong Zhang   PetscFunctionReturn(0);
22304222ddf1SHong Zhang }
22314222ddf1SHong Zhang 
22324222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
22334222ddf1SHong Zhang {
22344222ddf1SHong Zhang   PetscErrorCode ierr;
22354222ddf1SHong Zhang   Mat_Product    *product = C->product;
22364222ddf1SHong Zhang   Mat            A=product->A,P=product->B;
22374222ddf1SHong Zhang   MPI_Comm       comm;
22384222ddf1SHong Zhang   PetscBool      flg;
22394222ddf1SHong Zhang   PetscInt       alg=1; /* set default algorithm */
22404222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22414222ddf1SHong Zhang   const char     *algTypes[4] = {"scalable","nonscalable","allatonce","allatonce_merged"};
22424222ddf1SHong Zhang   PetscInt       nalg=4;
22434222ddf1SHong Zhang #else
22444222ddf1SHong Zhang   const char     *algTypes[5] = {"scalable","nonscalable","allatonce","allatonce_merged","hypre"};
22454222ddf1SHong Zhang   PetscInt       nalg=5;
22464222ddf1SHong Zhang #endif
22474222ddf1SHong Zhang   PetscInt       pN=P->cmap->N;
22484222ddf1SHong Zhang 
22494222ddf1SHong Zhang   PetscFunctionBegin;
22504222ddf1SHong Zhang   /* Check matrix local sizes */
22514222ddf1SHong Zhang   ierr = PetscObjectGetComm((PetscObject)C,&comm);CHKERRQ(ierr);
22524222ddf1SHong Zhang   if (A->rmap->rstart != P->rmap->rstart || A->rmap->rend != P->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Arow (%D, %D) != Prow (%D,%D)",A->rmap->rstart,A->rmap->rend,P->rmap->rstart,P->rmap->rend);
22534222ddf1SHong Zhang   if (A->cmap->rstart != P->rmap->rstart || A->cmap->rend != P->rmap->rend) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, Acol (%D, %D) != Prow (%D,%D)",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend);
22544222ddf1SHong Zhang 
22554222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22564222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
22574222ddf1SHong Zhang   if (flg) {
22584222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22594222ddf1SHong Zhang 
22604222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22614222ddf1SHong Zhang     if (pN > 100000) {
22624222ddf1SHong Zhang       MatInfo     Ainfo,Pinfo;
22634222ddf1SHong Zhang       PetscInt    nz_local;
22644222ddf1SHong Zhang       PetscBool   alg_scalable_loc=PETSC_FALSE,alg_scalable;
22654222ddf1SHong Zhang 
22664222ddf1SHong Zhang       ierr = MatGetInfo(A,MAT_LOCAL,&Ainfo);CHKERRQ(ierr);
22674222ddf1SHong Zhang       ierr = MatGetInfo(P,MAT_LOCAL,&Pinfo);CHKERRQ(ierr);
22684222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
22694222ddf1SHong Zhang 
22704222ddf1SHong Zhang       if (pN > product->fill*nz_local) alg_scalable_loc = PETSC_TRUE;
22714222ddf1SHong Zhang       ierr = MPIU_Allreduce(&alg_scalable_loc,&alg_scalable,1,MPIU_BOOL,MPI_LOR,comm);CHKERRQ(ierr);
22724222ddf1SHong Zhang 
22734222ddf1SHong Zhang       if (alg_scalable) {
22744222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22754222ddf1SHong Zhang         ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22764222ddf1SHong Zhang       }
22774222ddf1SHong Zhang     }
22784222ddf1SHong Zhang   }
22794222ddf1SHong Zhang 
22804222ddf1SHong Zhang   /* Get runtime option */
22814222ddf1SHong Zhang   if (product->api_user) {
22824222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatPtAP","Mat");CHKERRQ(ierr);
22834222ddf1SHong Zhang     ierr = PetscOptionsEList("-matptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22844222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22854222ddf1SHong Zhang   } else {
22864222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_PtAP","Mat");CHKERRQ(ierr);
22874222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_ptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
22884222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
22894222ddf1SHong Zhang   }
22904222ddf1SHong Zhang   if (flg) {
22914222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
22924222ddf1SHong Zhang   }
22934222ddf1SHong Zhang 
22944222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
22954222ddf1SHong Zhang   PetscFunctionReturn(0);
22964222ddf1SHong Zhang }
22974222ddf1SHong Zhang 
22984222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
22994222ddf1SHong Zhang {
23004222ddf1SHong Zhang   Mat_Product *product = C->product;
23014222ddf1SHong Zhang   Mat         A = product->A,R=product->B;
23024222ddf1SHong Zhang 
23034222ddf1SHong Zhang   PetscFunctionBegin;
23044222ddf1SHong Zhang   /* Check matrix local sizes */
23054222ddf1SHong Zhang   if (A->cmap->n != R->cmap->n || A->rmap->n != R->cmap->n) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, A local (%D, %D), R local (%D,%D)",A->rmap->n,A->rmap->n,R->rmap->n,R->cmap->n);
23064222ddf1SHong Zhang 
23074222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23084222ddf1SHong Zhang   PetscFunctionReturn(0);
23094222ddf1SHong Zhang }
23104222ddf1SHong Zhang 
23114222ddf1SHong Zhang /*
23124222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23134222ddf1SHong Zhang */
23144222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
23154222ddf1SHong Zhang {
23164222ddf1SHong Zhang   PetscErrorCode ierr;
23174222ddf1SHong Zhang   Mat_Product    *product = C->product;
23184222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
23194222ddf1SHong Zhang   PetscInt       alg = 1; /* default algorithm */
23204222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","nonscalable","seqmpi"};
23214222ddf1SHong Zhang   PetscInt       nalg = 3;
23224222ddf1SHong Zhang 
23234222ddf1SHong Zhang   PetscFunctionBegin;
23244222ddf1SHong Zhang   /* Set default algorithm */
23254222ddf1SHong Zhang   ierr = PetscStrcmp(C->product->alg,"default",&flg);CHKERRQ(ierr);
23264222ddf1SHong Zhang   if (flg) {
23274222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
23284222ddf1SHong Zhang   }
23294222ddf1SHong Zhang 
23304222ddf1SHong Zhang   /* Get runtime option */
23314222ddf1SHong Zhang   if (product->api_user) {
23324222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMatMult","Mat");CHKERRQ(ierr);
23334222ddf1SHong Zhang     ierr = PetscOptionsEList("-matmatmatmult_via","Algorithmic approach","MatMatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
23344222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
23354222ddf1SHong Zhang   } else {
23364222ddf1SHong Zhang     ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABC","Mat");CHKERRQ(ierr);
23374222ddf1SHong Zhang     ierr = PetscOptionsEList("-matproduct_abc_via","Algorithmic approach","MatProduct_ABC",algTypes,nalg,algTypes[alg],&alg,&flg);CHKERRQ(ierr);
23384222ddf1SHong Zhang     ierr = PetscOptionsEnd();CHKERRQ(ierr);
23394222ddf1SHong Zhang   }
23404222ddf1SHong Zhang   if (flg) {
23414222ddf1SHong Zhang     ierr = MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]);CHKERRQ(ierr);
23424222ddf1SHong Zhang   }
23434222ddf1SHong Zhang 
23444222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23454222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23464222ddf1SHong Zhang   PetscFunctionReturn(0);
23474222ddf1SHong Zhang }
23484222ddf1SHong Zhang 
23494222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
23504222ddf1SHong Zhang {
23514222ddf1SHong Zhang   PetscErrorCode ierr;
23524222ddf1SHong Zhang   Mat_Product    *product = C->product;
23534222ddf1SHong Zhang 
23544222ddf1SHong Zhang   PetscFunctionBegin;
23554222ddf1SHong Zhang   switch (product->type) {
23564222ddf1SHong Zhang   case MATPRODUCT_AB:
23574222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_AB(C);CHKERRQ(ierr);
23584222ddf1SHong Zhang     break;
23594222ddf1SHong Zhang   case MATPRODUCT_AtB:
23604222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_AtB(C);CHKERRQ(ierr);
23614222ddf1SHong Zhang     break;
23624222ddf1SHong Zhang   case MATPRODUCT_PtAP:
23634222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_PtAP(C);CHKERRQ(ierr);
23644222ddf1SHong Zhang     break;
23654222ddf1SHong Zhang   case MATPRODUCT_RARt:
23664222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_RARt(C);CHKERRQ(ierr);
23674222ddf1SHong Zhang     break;
23684222ddf1SHong Zhang   case MATPRODUCT_ABC:
23694222ddf1SHong Zhang     ierr = MatProductSetFromOptions_MPIAIJ_ABC(C);CHKERRQ(ierr);
23704222ddf1SHong Zhang     break;
23716718818eSStefano Zampini   default:
23726718818eSStefano Zampini     break;
23734222ddf1SHong Zhang   }
23744222ddf1SHong Zhang   PetscFunctionReturn(0);
23754222ddf1SHong Zhang }
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