12499ec78SHong Zhang /* 22499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 32499ec78SHong Zhang C = A * B 42499ec78SHong Zhang */ 5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 8c6db04a5SJed Brown #include <petscbt.h> 9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 10af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 121634b032SHong Zhang 135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat); 155e5acdf2Sstefano_zampini #endif 165e5acdf2Sstefano_zampini 17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C) 18d71ae5a4SJacob Faibussowitsch { 198a9c020eSBarry Smith Mat_Product *product = C->product; 208a9c020eSBarry Smith Mat B = product->B; 218a9c020eSBarry Smith 228a9c020eSBarry Smith PetscFunctionBegin; 238a9c020eSBarry Smith PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B)); 248a9c020eSBarry Smith PetscCall(MatDestroy(&B)); 258a9c020eSBarry Smith PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C)); 263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278a9c020eSBarry Smith } 288a9c020eSBarry Smith 29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C) 30d71ae5a4SJacob Faibussowitsch { 314222ddf1SHong Zhang Mat_Product *product = C->product; 324222ddf1SHong Zhang Mat A = product->A, B = product->B; 334222ddf1SHong Zhang MatProductAlgorithm alg = product->alg; 344222ddf1SHong Zhang PetscReal fill = product->fill; 355e68f438SHong Zhang PetscBool flg; 362499ec78SHong Zhang 372499ec78SHong Zhang PetscFunctionBegin; 384222ddf1SHong Zhang /* scalable */ 399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 404222ddf1SHong Zhang if (flg) { 419566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 430fc8cf34SHong Zhang } 447d0a89b7SHong Zhang 454222ddf1SHong Zhang /* nonscalable */ 469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "nonscalable", &flg)); 474222ddf1SHong Zhang if (flg) { 489566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 504222ddf1SHong Zhang } 514222ddf1SHong Zhang 524222ddf1SHong Zhang /* seqmpi */ 539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "seqmpi", &flg)); 544222ddf1SHong Zhang if (flg) { 559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C)); 563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 574222ddf1SHong Zhang } 584222ddf1SHong Zhang 594e84afc0SStefano Zampini /* backend general code */ 609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "backend", &flg)); 614e84afc0SStefano Zampini if (flg) { 629566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 644e84afc0SStefano Zampini } 654e84afc0SStefano Zampini 664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 684222ddf1SHong Zhang if (flg) { 699566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 714222ddf1SHong Zhang } 724222ddf1SHong Zhang #endif 734222ddf1SHong Zhang SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 742499ec78SHong Zhang } 752499ec78SHong Zhang 762a8381b2SBarry Smith PetscErrorCode MatProductCtxDestroy_MPIAIJ_MatMatMult(PetscCtxRt data) 77d71ae5a4SJacob Faibussowitsch { 78cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap = *(MatProductCtx_APMPI **)data; 79598bc09dSHong Zhang 80598bc09dSHong Zhang PetscFunctionBegin; 819566063dSJacob Faibussowitsch PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r)); 829566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->bufa)); 839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_loc)); 849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_oth)); 859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->Pt)); 869566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->api)); 879566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apj)); 889566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apa)); 899566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap)); 903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91598bc09dSHong Zhang } 92598bc09dSHong Zhang 93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C) 94d71ae5a4SJacob Faibussowitsch { 954ae0847bSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 96f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 97f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 9899aa8e07SJunchao Zhang PetscScalar *cda, *coa; 99598bc09dSHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 1009ce11a7cSHong Zhang PetscScalar *apa, *ca; 101c12557a1SHong Zhang PetscInt cm = C->rmap->n; 102cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 103c12557a1SHong Zhang PetscInt *api, *apj, *apJ, i, k; 10429825010SHong Zhang PetscInt cstart = C->cmap->rstart; 105598bc09dSHong Zhang PetscInt cdnz, conz, k0, k1; 10699aa8e07SJunchao Zhang const PetscScalar *dummy1, *dummy2, *dummy3, *dummy4; 1079467f45fSHong Zhang MPI_Comm comm; 1089467f45fSHong Zhang PetscMPIInt size; 109598bc09dSHong Zhang 110598bc09dSHong Zhang PetscFunctionBegin; 1116718818eSStefano Zampini MatCheckProduct(C, 3); 112cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 11328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 1149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 116aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 11780da8df7SHong Zhang 11865e4b4d4SStefano Zampini /* flag CPU mask for C */ 11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 12065e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 12165e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 12265e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 12365e4b4d4SStefano Zampini #endif 12465e4b4d4SStefano Zampini 125a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 126a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */ 1279566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 129598bc09dSHong Zhang 130598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 131598bc09dSHong Zhang /* get data from symbolic products */ 132f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 133c12557a1SHong Zhang p_oth = NULL; 134f4f49eeaSPierre Jolivet if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 135598bc09dSHong Zhang 136598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 137598bc09dSHong Zhang apa = ptap->apa; 138598bc09dSHong Zhang 13929825010SHong Zhang api = ptap->api; 14029825010SHong Zhang apj = ptap->apj; 141ce496241SStefano Zampini /* trigger copy to CPU */ 14299aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy1)); 14399aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy2)); 14499aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayRead(ptap->P_loc, &dummy3)); 14599aa8e07SJunchao Zhang if (ptap->P_oth) PetscCall(MatSeqAIJGetArrayRead(ptap->P_oth, &dummy4)); 14699aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayWrite(c->A, &cda)); 14799aa8e07SJunchao Zhang PetscCall(MatSeqAIJGetArrayWrite(c->B, &coa)); 148598bc09dSHong Zhang for (i = 0; i < cm; i++) { 149c12557a1SHong Zhang /* compute apa = A[i,:]*P */ 150e497d3c8SHong Zhang AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa); 151598bc09dSHong Zhang 152598bc09dSHong Zhang /* set values in C */ 153216f1e5cSPierre Jolivet apJ = PetscSafePointerPlusOffset(apj, api[i]); 154598bc09dSHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 155598bc09dSHong Zhang conz = co->i[i + 1] - co->i[i]; 156598bc09dSHong Zhang 157910cf402Sprj- /* 1st off-diagonal part of C */ 1588e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 159598bc09dSHong Zhang k = 0; 160598bc09dSHong Zhang for (k0 = 0; k0 < conz; k0++) { 161598bc09dSHong Zhang if (apJ[k] >= cstart) break; 162598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1635cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 164598bc09dSHong Zhang } 165598bc09dSHong Zhang 166598bc09dSHong Zhang /* diagonal part of C */ 1678e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(cda, cd->i[i]); 168598bc09dSHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 169598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 1705cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 171598bc09dSHong Zhang } 172598bc09dSHong Zhang 173910cf402Sprj- /* 2nd off-diagonal part of C */ 1748e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 175598bc09dSHong Zhang for (; k0 < conz; k0++) { 176598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1775cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 178598bc09dSHong Zhang } 179598bc09dSHong Zhang } 18099aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy1)); 18199aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy2)); 18299aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_loc, &dummy3)); 18399aa8e07SJunchao Zhang if (ptap->P_oth) PetscCall(MatSeqAIJRestoreArrayRead(ptap->P_oth, &dummy4)); 18499aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayWrite(c->A, &cda)); 18599aa8e07SJunchao Zhang PetscCall(MatSeqAIJRestoreArrayWrite(c->B, &coa)); 18699aa8e07SJunchao Zhang 1879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 1889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 190598bc09dSHong Zhang } 191598bc09dSHong Zhang 192d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C) 193d71ae5a4SJacob Faibussowitsch { 194ce94432eSBarry Smith MPI_Comm comm; 1959467f45fSHong Zhang PetscMPIInt size; 196cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 1970298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 1986718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 199f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 2007dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 2014ae0847bSHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 202d14fa243SHong Zhang PetscInt *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi; 2035cab4f04SHong Zhang PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n; 204598bc09dSHong Zhang PetscBT lnkbt; 205bfcd1a73SHong Zhang PetscReal afill; 206b92f168fSBarry Smith MatType mtype; 207598bc09dSHong Zhang 208598bc09dSHong Zhang PetscFunctionBegin; 2096718818eSStefano Zampini MatCheckProduct(C, 4); 21028b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 2119566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2139467f45fSHong Zhang 214cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 2159566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 216598bc09dSHong Zhang 217598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 2189566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 21919f0e57aSHong Zhang 220598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 2219566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 222598bc09dSHong Zhang 223f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 2249371c9d4SSatish Balay pi_loc = p_loc->i; 2259371c9d4SSatish Balay pj_loc = p_loc->j; 2269467f45fSHong Zhang if (size > 1) { 227f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 2289371c9d4SSatish Balay pi_oth = p_oth->i; 2299371c9d4SSatish Balay pj_oth = p_oth->j; 23020e3dc75SHong Zhang } else { 23120e3dc75SHong Zhang p_oth = NULL; 2329371c9d4SSatish Balay pi_oth = NULL; 2339371c9d4SSatish Balay pj_oth = NULL; 2349467f45fSHong Zhang } 235598bc09dSHong Zhang 236598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 23784648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 238a1a4e84aSHong Zhang ptap->api = api; 239598bc09dSHong Zhang api[0] = 0; 240598bc09dSHong Zhang 2415cab4f04SHong Zhang /* create and initialize a linked list */ 2429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 243598bc09dSHong Zhang 244bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 2459566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 246598bc09dSHong Zhang current_space = free_space; 247598bc09dSHong Zhang 248d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 249598bc09dSHong Zhang for (i = 0; i < am; i++) { 250598bc09dSHong Zhang /* diagonal portion of A */ 251598bc09dSHong Zhang nzi = adi[i + 1] - adi[i]; 252598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 253598bc09dSHong Zhang row = *adj++; 254598bc09dSHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 255598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 256598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 2579566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 258598bc09dSHong Zhang } 259598bc09dSHong Zhang /* off-diagonal portion of A */ 260598bc09dSHong Zhang nzi = aoi[i + 1] - aoi[i]; 261598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 262598bc09dSHong Zhang row = *aoj++; 263598bc09dSHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 264598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 2659566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 266598bc09dSHong Zhang } 2678c78258cSHong Zhang /* add possible missing diagonal entry */ 2688c78258cSHong Zhang if (C->force_diagonals) { 2698c78258cSHong Zhang j = i + rstart; /* column index */ 2709566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt)); 2718c78258cSHong Zhang } 272598bc09dSHong Zhang 273d14fa243SHong Zhang apnz = lnk[0]; 274598bc09dSHong Zhang api[i + 1] = api[i] + apnz; 275598bc09dSHong Zhang 276598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 277598bc09dSHong Zhang if (current_space->local_remaining < apnz) { 2789566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 279598bc09dSHong Zhang nspacedouble++; 280598bc09dSHong Zhang } 281598bc09dSHong Zhang 282598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 2839566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt)); 2849566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 2852205254eSKarl Rupp 286598bc09dSHong Zhang current_space->array += apnz; 287598bc09dSHong Zhang current_space->local_used += apnz; 288598bc09dSHong Zhang current_space->local_remaining -= apnz; 289598bc09dSHong Zhang } 290598bc09dSHong Zhang 291598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 292598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 29384648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj)); 294a1a4e84aSHong Zhang apj = ptap->apj; 2959566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 2969566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 297598bc09dSHong Zhang 298f84c536bSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 2999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN, &ptap->apa)); 300f84c536bSHong Zhang 3014222ddf1SHong Zhang /* set and assemble symbolic parallel matrix C */ 3029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 3039566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 304a2f3521dSMark F. Adams 3059566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 3069566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 3079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 308d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 30917f75172Sandi selinger 3109566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 311799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3149566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 315598bc09dSHong Zhang 3164222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 3174222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 318598bc09dSHong Zhang 3194222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 3206718818eSStefano Zampini C->product->data = ptap; 321cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult; 322598bc09dSHong Zhang 323bfcd1a73SHong Zhang /* set MatInfo */ 324118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 325bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0; 3264222ddf1SHong Zhang C->info.mallocs = nspacedouble; 3274222ddf1SHong Zhang C->info.fill_ratio_given = fill; 3284222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 329bfcd1a73SHong Zhang 330bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO) 331bfcd1a73SHong Zhang if (api[am]) { 3329566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 3339566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 334bfcd1a73SHong Zhang } else { 3359566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 336bfcd1a73SHong Zhang } 337bfcd1a73SHong Zhang #endif 3383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 339598bc09dSHong Zhang } 340598bc09dSHong Zhang 3416718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat); 3426718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat); 3436718818eSStefano Zampini 344d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C) 345d71ae5a4SJacob Faibussowitsch { 3464222ddf1SHong Zhang Mat_Product *product = C->product; 3474222ddf1SHong Zhang Mat A = product->A, B = product->B; 3489123193aSHong Zhang 3499123193aSHong Zhang PetscFunctionBegin; 3504222ddf1SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) 35198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 3524222ddf1SHong Zhang 3534222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense; 3544222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3569123193aSHong Zhang } 3572ef1f0ffSBarry Smith 358d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C) 359d71ae5a4SJacob Faibussowitsch { 3604222ddf1SHong Zhang Mat_Product *product = C->product; 3614222ddf1SHong Zhang Mat A = product->A, B = product->B; 3624222ddf1SHong Zhang 3634222ddf1SHong Zhang PetscFunctionBegin; 3644222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 36598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 3664222ddf1SHong Zhang 3674222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense; 3684222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 3693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3704222ddf1SHong Zhang } 3714222ddf1SHong Zhang 372d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C) 373d71ae5a4SJacob Faibussowitsch { 3744222ddf1SHong Zhang Mat_Product *product = C->product; 3754222ddf1SHong Zhang 3764222ddf1SHong Zhang PetscFunctionBegin; 3774222ddf1SHong Zhang switch (product->type) { 378d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 379d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C)); 380d71ae5a4SJacob Faibussowitsch break; 381d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 382d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C)); 383d71ae5a4SJacob Faibussowitsch break; 384d71ae5a4SJacob Faibussowitsch default: 385d71ae5a4SJacob Faibussowitsch break; 3864222ddf1SHong Zhang } 3873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3884222ddf1SHong Zhang } 3899123193aSHong Zhang 3904324174eSBarry Smith typedef struct { 3915ea7661aSPierre Jolivet Mat workB, workB1; 3924324174eSBarry Smith MPI_Request *rwaits, *swaits; 39387753ddeSHong Zhang PetscInt nsends, nrecvs; 39487753ddeSHong Zhang MPI_Datatype *stype, *rtype; 3956718818eSStefano Zampini PetscInt blda; 3964324174eSBarry Smith } MPIAIJ_MPIDense; 3974324174eSBarry Smith 3982a8381b2SBarry Smith static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(PetscCtxRt ctx) 399d71ae5a4SJacob Faibussowitsch { 400cc1eb50dSBarry Smith MPIAIJ_MPIDense *contents = *(MPIAIJ_MPIDense **)ctx; 40187753ddeSHong Zhang PetscInt i; 4024324174eSBarry Smith 4034324174eSBarry Smith PetscFunctionBegin; 4049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB)); 4059566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB1)); 40648a46eb9SPierre Jolivet for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i])); 40748a46eb9SPierre Jolivet for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i])); 4089566063dSJacob Faibussowitsch PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits)); 4099566063dSJacob Faibussowitsch PetscCall(PetscFree(contents)); 4103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4114324174eSBarry Smith } 4124324174eSBarry Smith 413d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 414d71ae5a4SJacob Faibussowitsch { 415f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 4166497c311SBarry Smith PetscInt nz = aij->B->cmap->n, blda, m, M, n, N; 4174324174eSBarry Smith MPIAIJ_MPIDense *contents; 4184324174eSBarry Smith VecScatter ctx = aij->Mvctx; 4196497c311SBarry Smith PetscInt Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, numBb; 42087753ddeSHong Zhang MPI_Comm comm; 42187753ddeSHong Zhang MPI_Datatype type1, *stype, *rtype; 42287753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 4236497c311SBarry Smith PetscMPIInt *disp, nsends, nrecvs, nrows_to, nrows_from; 4246718818eSStefano Zampini PetscBool cisdense; 4259123193aSHong Zhang 4269123193aSHong Zhang PetscFunctionBegin; 4276718818eSStefano Zampini MatCheckProduct(C, 4); 42828b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 4299566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4309566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense)); 43148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name)); 4329566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(C, &m, &n)); 4339566063dSJacob Faibussowitsch PetscCall(MatGetSize(C, &M, &N)); 43448a46eb9SPierre Jolivet if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN)); 4359566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 4369566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 4379566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 4389566063dSJacob Faibussowitsch PetscCall(PetscNew(&contents)); 4394324174eSBarry Smith 4409566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4419566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 44287753ddeSHong Zhang 44387753ddeSHong Zhang /* Create column block of B and C for memory scalability when BN is too large */ 44487753ddeSHong Zhang /* Estimate Bbn, column size of Bb */ 44587753ddeSHong Zhang if (nz) { 44687753ddeSHong Zhang Bbn1 = 2 * Am * BN / nz; 447da7cbbe7SHong Zhang if (!Bbn1) Bbn1 = 1; 44887753ddeSHong Zhang } else Bbn1 = BN; 44987753ddeSHong Zhang 45058b7e2c1SStefano Zampini bs = B->cmap->bs; 45187753ddeSHong Zhang Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */ 45287753ddeSHong Zhang if (Bbn1 > BN) Bbn1 = BN; 453462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm)); 45487753ddeSHong Zhang 45587753ddeSHong Zhang /* Enable runtime option for Bbn */ 4561e2d28a0SPierre Jolivet PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatProduct", "Mat"); 4571e2d28a0SPierre Jolivet PetscCall(PetscOptionsDeprecated("-matmatmult_Bbn", "-matproduct_batch_size", "3.25", NULL)); 4581e2d28a0SPierre Jolivet PetscCall(PetscOptionsInt("-matproduct_batch_size", "Number of columns in Bb", "MatProduct", Bbn, &Bbn, NULL)); 459d0609cedSBarry Smith PetscOptionsEnd(); 4606718818eSStefano Zampini Bbn = PetscMin(Bbn, BN); 46187753ddeSHong Zhang 4626718818eSStefano Zampini if (Bbn > 0 && Bbn < BN) { 4635ea7661aSPierre Jolivet numBb = BN / Bbn; 4645ea7661aSPierre Jolivet Bbn1 = BN - numBb * Bbn; 4655ea7661aSPierre Jolivet } else numBb = 0; 46687753ddeSHong Zhang 4675ea7661aSPierre Jolivet if (numBb) { 4689566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb)); 4695ea7661aSPierre Jolivet if (Bbn1) { /* Create workB1 for the remaining columns */ 4709566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1)); 47187753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4729566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1)); 4735ea7661aSPierre Jolivet } else contents->workB1 = NULL; 47487753ddeSHong Zhang } 47587753ddeSHong Zhang 47687753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4779566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB)); 47887753ddeSHong Zhang 47987753ddeSHong Zhang /* Use MPI derived data type to reduce memory required by the send/recv buffers */ 4809566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits)); 48187753ddeSHong Zhang contents->stype = stype; 48287753ddeSHong Zhang contents->nsends = nsends; 48387753ddeSHong Zhang 48487753ddeSHong Zhang contents->rtype = rtype; 48587753ddeSHong Zhang contents->nrecvs = nrecvs; 4866718818eSStefano Zampini contents->blda = blda; 48787753ddeSHong Zhang 488*703c9151SPierre Jolivet PetscCall(PetscMalloc1(Bm, &disp)); 4896497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) { 4906497c311SBarry Smith PetscCall(PetscMPIIntCast(sstarts[i + 1] - sstarts[i], &nrows_to)); 4916497c311SBarry Smith for (PetscInt j = 0; j < nrows_to; j++) PetscCall(PetscMPIIntCast(sindices[sstarts[i] + j], &disp[j])); /* rowB to be sent */ 4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1)); 4939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i])); 4949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&stype[i])); 4959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 49687753ddeSHong Zhang } 49787753ddeSHong Zhang 4986497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) { 49987753ddeSHong Zhang /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */ 5006497c311SBarry Smith PetscCall(PetscMPIIntCast(rstarts[i + 1] - rstarts[i], &nrows_from)); 50187753ddeSHong Zhang disp[0] = 0; 5029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1)); 5039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i])); 5049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&rtype[i])); 5059566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 50687753ddeSHong Zhang } 50787753ddeSHong Zhang 5089566063dSJacob Faibussowitsch PetscCall(PetscFree(disp)); 5099566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 5109566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 5119566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 5129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 5139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 514*703c9151SPierre Jolivet PetscCall(MatProductClear(aij->A)); 515*703c9151SPierre Jolivet PetscCall(MatProductClear(((Mat_MPIDense *)B->data)->A)); 516*703c9151SPierre Jolivet PetscCall(MatProductClear(((Mat_MPIDense *)C->data)->A)); 517*703c9151SPierre Jolivet PetscCall(MatProductCreateWithMat(aij->A, ((Mat_MPIDense *)B->data)->A, NULL, ((Mat_MPIDense *)C->data)->A)); 518*703c9151SPierre Jolivet PetscCall(MatProductSetType(((Mat_MPIDense *)C->data)->A, MATPRODUCT_AB)); 519*703c9151SPierre Jolivet PetscCall(MatProductSetFromOptions(((Mat_MPIDense *)C->data)->A)); 520*703c9151SPierre Jolivet PetscCall(MatProductSymbolic(((Mat_MPIDense *)C->data)->A)); 5216718818eSStefano Zampini C->product->data = contents; 5226718818eSStefano Zampini C->product->destroy = MatMPIAIJ_MPIDenseDestroy; 5234222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense; 5243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5259123193aSHong Zhang } 5269123193aSHong Zhang 52793aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool); 5289612af27SStefano Zampini 529f32d5d43SBarry Smith /* 5302636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 5312636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 53287753ddeSHong Zhang 5339612af27SStefano Zampini Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense() 534f32d5d43SBarry Smith */ 5359612af27SStefano Zampini 53666976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB) 537d71ae5a4SJacob Faibussowitsch { 538f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 5391683a169SBarry Smith const PetscScalar *b; 54087753ddeSHong Zhang PetscScalar *rvalues; 541f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 54287753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 5433515ee7fSJunchao Zhang const PetscMPIInt *sprocs, *rprocs; 5446497c311SBarry Smith PetscMPIInt nsends, nrecvs; 545f32d5d43SBarry Smith MPI_Request *swaits, *rwaits; 546ce94432eSBarry Smith MPI_Comm comm; 5476497c311SBarry Smith PetscMPIInt tag = ((PetscObject)ctx)->tag, ncols, nrows, nsends_mpi, nrecvs_mpi; 5484324174eSBarry Smith MPIAIJ_MPIDense *contents; 5494324174eSBarry Smith Mat workB; 55087753ddeSHong Zhang MPI_Datatype *stype, *rtype; 5516718818eSStefano Zampini PetscInt blda; 552f32d5d43SBarry Smith 553f32d5d43SBarry Smith PetscFunctionBegin; 5546718818eSStefano Zampini MatCheckProduct(C, 4); 55528b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5566497c311SBarry Smith PetscCall(PetscMPIIntCast(B->cmap->N, &ncols)); 5576497c311SBarry Smith PetscCall(PetscMPIIntCast(aij->B->cmap->n, &nrows)); 5586718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 5599566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/)); 5609566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/)); 5619566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends, &nsends_mpi)); 5629566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi)); 563b45e3bf4SStefano Zampini if (Bbidx == 0) workB = *outworkB = contents->workB; 564b45e3bf4SStefano Zampini else workB = *outworkB = contents->workB1; 56508401ef6SPierre Jolivet PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows); 5663515ee7fSJunchao Zhang swaits = contents->swaits; 5673515ee7fSJunchao Zhang rwaits = contents->rwaits; 568f32d5d43SBarry Smith 5699566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 5709566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 57108401ef6SPierre Jolivet PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda); 5729566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(workB, &rvalues)); 573f32d5d43SBarry Smith 57487753ddeSHong Zhang /* Post recv, use MPI derived data type to save memory */ 5759566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 57687753ddeSHong Zhang rtype = contents->rtype; 5776497c311SBarry Smith for (PetscMPIInt i = 0; i < nrecvs; i++) PetscCallMPI(MPIU_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i)); 578f32d5d43SBarry Smith 57987753ddeSHong Zhang stype = contents->stype; 5806497c311SBarry Smith for (PetscMPIInt i = 0; i < nsends; i++) PetscCallMPI(MPIU_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i)); 5812636ff26SBarry Smith 5829566063dSJacob Faibussowitsch if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE)); 5839566063dSJacob Faibussowitsch if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE)); 584f32d5d43SBarry Smith 5859566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL)); 5869566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL)); 5879566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 5889566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(workB, &rvalues)); 5893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 59087753ddeSHong Zhang } 591f32d5d43SBarry Smith 592d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C) 593d71ae5a4SJacob Faibussowitsch { 594f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 595f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense *)B->data; 596f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense *)C->data; 597f32d5d43SBarry Smith Mat workB; 59887753ddeSHong Zhang MPIAIJ_MPIDense *contents; 5999123193aSHong Zhang 6009123193aSHong Zhang PetscFunctionBegin; 6016718818eSStefano Zampini MatCheckProduct(C, 3); 60228b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 6036718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 604*703c9151SPierre Jolivet /* diagonal block of A times all local rows of B, first make sure that everything is up-to-date */ 605*703c9151SPierre Jolivet if (!cdense->A->product) { 606*703c9151SPierre Jolivet PetscCall(MatProductCreateWithMat(aij->A, bdense->A, NULL, cdense->A)); 607*703c9151SPierre Jolivet PetscCall(MatProductSetType(cdense->A, MATPRODUCT_AB)); 608*703c9151SPierre Jolivet PetscCall(MatProductSetFromOptions(cdense->A)); 609*703c9151SPierre Jolivet PetscCall(MatProductSymbolic(cdense->A)); 610*703c9151SPierre Jolivet } else PetscCall(MatProductReplaceMats(aij->A, bdense->A, NULL, cdense->A)); 611*703c9151SPierre Jolivet if (PetscDefined(HAVE_CUPM) && !cdense->A->product->clear) { 612*703c9151SPierre Jolivet PetscBool flg; 613*703c9151SPierre Jolivet 614*703c9151SPierre Jolivet PetscCall(PetscObjectTypeCompare((PetscObject)C, MATMPIDENSE, &flg)); 615*703c9151SPierre Jolivet if (flg) PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIAIJ, &flg)); 616*703c9151SPierre Jolivet if (!flg) cdense->A->product->clear = PETSC_TRUE; /* if either A or C is a device Mat, make sure MatProductClear() is called */ 617*703c9151SPierre Jolivet } 618*703c9151SPierre Jolivet PetscCall(MatProductNumeric(cdense->A)); 6195ea7661aSPierre Jolivet if (contents->workB->cmap->n == B->cmap->N) { 62087753ddeSHong Zhang /* get off processor parts of B needed to complete C=A*B */ 6219566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB)); 622f32d5d43SBarry Smith 623f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 6249566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 62587753ddeSHong Zhang } else { 6265ea7661aSPierre Jolivet Mat Bb, Cb; 6276497c311SBarry Smith PetscInt BN = B->cmap->N, n = contents->workB->cmap->n; 628664c1e85SStefano Zampini PetscBool ccpu; 62987753ddeSHong Zhang 63008401ef6SPierre Jolivet PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n); 631664c1e85SStefano Zampini /* Prevent from unneeded copies back and forth from the GPU 632664c1e85SStefano Zampini when getting and restoring the submatrix 633664c1e85SStefano Zampini We need a proper GPU code for AIJ * dense in parallel */ 6349566063dSJacob Faibussowitsch PetscCall(MatBoundToCPU(C, &ccpu)); 6359566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, PETSC_TRUE)); 6366497c311SBarry Smith for (PetscInt i = 0; i < BN; i += n) { 637a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb)); 638a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb)); 63987753ddeSHong Zhang 6405ea7661aSPierre Jolivet /* get off processor parts of B needed to complete C=A*B */ 6419566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB)); 6425ea7661aSPierre Jolivet 6435ea7661aSPierre Jolivet /* off-diagonal block of A times nonlocal rows of B */ 6445ea7661aSPierre Jolivet cdense = (Mat_MPIDense *)Cb->data; 6459566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 6469566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(B, &Bb)); 6479566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(C, &Cb)); 64887753ddeSHong Zhang } 6499566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, ccpu)); 65087753ddeSHong Zhang } 6513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6529123193aSHong Zhang } 653cf1a0672SHong Zhang 654d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C) 655d71ae5a4SJacob Faibussowitsch { 656cf1a0672SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 657f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 658f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 659cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj, *aoi = ao->i, *aoj; 660cf1a0672SHong Zhang PetscScalar *ada, *aoa, *cda = cd->a, *coa = co->a; 661cf1a0672SHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 662cf1a0672SHong Zhang PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj; 66329825010SHong Zhang PetscScalar *pa_loc, *pa_oth, *pa, valtmp, *ca; 66429825010SHong Zhang PetscInt cm = C->rmap->n, anz, pnz; 665cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 66680da8df7SHong Zhang PetscScalar *apa_sparse; 667ce496241SStefano Zampini const PetscScalar *dummy; 668cf1a0672SHong Zhang PetscInt *api, *apj, *apJ, i, j, k, row; 66929825010SHong Zhang PetscInt cstart = C->cmap->rstart; 67029825010SHong Zhang PetscInt cdnz, conz, k0, k1, nextp; 671a7c7454dSHong Zhang MPI_Comm comm; 672a7c7454dSHong Zhang PetscMPIInt size; 6731634b032SHong Zhang 6741634b032SHong Zhang PetscFunctionBegin; 6756718818eSStefano Zampini MatCheckProduct(C, 3); 676cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 67728b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 6789566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 6799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 680aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 681a7c7454dSHong Zhang 68265e4b4d4SStefano Zampini /* flag CPU mask for C */ 68365e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 68465e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 68565e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 68665e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 68765e4b4d4SStefano Zampini #endif 68880da8df7SHong Zhang apa_sparse = ptap->apa; 68980da8df7SHong Zhang 690cf1a0672SHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 691cf1a0672SHong Zhang /* update numerical values of P_oth and P_loc */ 6929566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 6939566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 694cf1a0672SHong Zhang 695cf1a0672SHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 696cf1a0672SHong Zhang /* get data from symbolic products */ 697f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 6989371c9d4SSatish Balay pi_loc = p_loc->i; 6999371c9d4SSatish Balay pj_loc = p_loc->j; 7009371c9d4SSatish Balay pa_loc = p_loc->a; 701a7c7454dSHong Zhang if (size > 1) { 702f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 7039371c9d4SSatish Balay pi_oth = p_oth->i; 7049371c9d4SSatish Balay pj_oth = p_oth->j; 7059371c9d4SSatish Balay pa_oth = p_oth->a; 70620e3dc75SHong Zhang } else { 7079371c9d4SSatish Balay p_oth = NULL; 7089371c9d4SSatish Balay pi_oth = NULL; 7099371c9d4SSatish Balay pj_oth = NULL; 7109371c9d4SSatish Balay pa_oth = NULL; 711a7c7454dSHong Zhang } 712cf1a0672SHong Zhang 713ce496241SStefano Zampini /* trigger copy to CPU */ 7149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 7159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 7169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 7179566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 71829825010SHong Zhang api = ptap->api; 71929825010SHong Zhang apj = ptap->apj; 720cf1a0672SHong Zhang for (i = 0; i < cm; i++) { 72129825010SHong Zhang apJ = apj + api[i]; 72229825010SHong Zhang 723cf1a0672SHong Zhang /* diagonal portion of A */ 724cf1a0672SHong Zhang anz = adi[i + 1] - adi[i]; 725cf1a0672SHong Zhang adj = ad->j + adi[i]; 726cf1a0672SHong Zhang ada = ad->a + adi[i]; 727cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 728cf1a0672SHong Zhang row = adj[j]; 729cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 730cf1a0672SHong Zhang pj = pj_loc + pi_loc[row]; 731cf1a0672SHong Zhang pa = pa_loc + pi_loc[row]; 73229825010SHong Zhang /* perform sparse axpy */ 733cf1a0672SHong Zhang valtmp = ada[j]; 73429825010SHong Zhang nextp = 0; 73529825010SHong Zhang for (k = 0; nextp < pnz; k++) { 73629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 73729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 73829825010SHong Zhang } 7391634b032SHong Zhang } 7409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 741cf1a0672SHong Zhang } 7421634b032SHong Zhang 743cf1a0672SHong Zhang /* off-diagonal portion of A */ 744cf1a0672SHong Zhang anz = aoi[i + 1] - aoi[i]; 7458e3a54c0SPierre Jolivet aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]); 7468e3a54c0SPierre Jolivet aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]); 747cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 748cf1a0672SHong Zhang row = aoj[j]; 749cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 750cf1a0672SHong Zhang pj = pj_oth + pi_oth[row]; 751cf1a0672SHong Zhang pa = pa_oth + pi_oth[row]; 75229825010SHong Zhang /* perform sparse axpy */ 753cf1a0672SHong Zhang valtmp = aoa[j]; 75429825010SHong Zhang nextp = 0; 75529825010SHong Zhang for (k = 0; nextp < pnz; k++) { 75629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 75729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 75829825010SHong Zhang } 759cf1a0672SHong Zhang } 7609566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 761cf1a0672SHong Zhang } 7621634b032SHong Zhang 763cf1a0672SHong Zhang /* set values in C */ 764cf1a0672SHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 765cf1a0672SHong Zhang conz = co->i[i + 1] - co->i[i]; 7661634b032SHong Zhang 767910cf402Sprj- /* 1st off-diagonal part of C */ 7688e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 769cf1a0672SHong Zhang k = 0; 770cf1a0672SHong Zhang for (k0 = 0; k0 < conz; k0++) { 771cf1a0672SHong Zhang if (apJ[k] >= cstart) break; 77229825010SHong Zhang ca[k0] = apa_sparse[k]; 77329825010SHong Zhang apa_sparse[k] = 0.0; 774cf1a0672SHong Zhang k++; 775cf1a0672SHong Zhang } 7761634b032SHong Zhang 777cf1a0672SHong Zhang /* diagonal part of C */ 778cf1a0672SHong Zhang ca = cda + cd->i[i]; 779cf1a0672SHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 78029825010SHong Zhang ca[k1] = apa_sparse[k]; 78129825010SHong Zhang apa_sparse[k] = 0.0; 782cf1a0672SHong Zhang k++; 783cf1a0672SHong Zhang } 784cf1a0672SHong Zhang 785910cf402Sprj- /* 2nd off-diagonal part of C */ 7868e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 787cf1a0672SHong Zhang for (; k0 < conz; k0++) { 78829825010SHong Zhang ca[k0] = apa_sparse[k]; 78929825010SHong Zhang apa_sparse[k] = 0.0; 790cf1a0672SHong Zhang k++; 791cf1a0672SHong Zhang } 792cf1a0672SHong Zhang } 7939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 7949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 7953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 796cf1a0672SHong Zhang } 797cf1a0672SHong Zhang 7980fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */ 799d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C) 800d71ae5a4SJacob Faibussowitsch { 801ce94432eSBarry Smith MPI_Comm comm; 802a7c7454dSHong Zhang PetscMPIInt size; 803cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 8040298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 8056718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 806f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 8077dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 808cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 8098c78258cSHong Zhang PetscInt i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1; 810e5ab8c0aSKarl Rupp PetscInt am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20; 811cf1a0672SHong Zhang PetscReal afill; 812b92f168fSBarry Smith MatType mtype; 813cf1a0672SHong Zhang 814cf1a0672SHong Zhang PetscFunctionBegin; 8156718818eSStefano Zampini MatCheckProduct(C, 4); 81628b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 8179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 8189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 819a7c7454dSHong Zhang 820cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 8219566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 822cf1a0672SHong Zhang 823cf1a0672SHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 8249566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 82519f0e57aSHong Zhang 826cf1a0672SHong Zhang /* get P_loc by taking all local rows of P */ 8279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 828cf1a0672SHong Zhang 829f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 8309371c9d4SSatish Balay pi_loc = p_loc->i; 8319371c9d4SSatish Balay pj_loc = p_loc->j; 832a7c7454dSHong Zhang if (size > 1) { 833f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 8349371c9d4SSatish Balay pi_oth = p_oth->i; 8359371c9d4SSatish Balay pj_oth = p_oth->j; 836968382fdSHong Zhang } else { 83720e3dc75SHong Zhang p_oth = NULL; 8389371c9d4SSatish Balay pi_oth = NULL; 8399371c9d4SSatish Balay pj_oth = NULL; 840a7c7454dSHong Zhang } 841cf1a0672SHong Zhang 842cf1a0672SHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 84384648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 844cf1a0672SHong Zhang ptap->api = api; 845cf1a0672SHong Zhang api[0] = 0; 846cf1a0672SHong Zhang 8479566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk)); 848cf1a0672SHong Zhang 849cf1a0672SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 8509566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 851cf1a0672SHong Zhang current_space = free_space; 852d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 853cf1a0672SHong Zhang for (i = 0; i < am; i++) { 854cf1a0672SHong Zhang /* diagonal portion of A */ 855cf1a0672SHong Zhang nzi = adi[i + 1] - adi[i]; 856cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 857cf1a0672SHong Zhang row = *adj++; 858cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 859cf1a0672SHong Zhang Jptr = pj_loc + pi_loc[row]; 8608a210135Sandi selinger /* Expand list if it is not long enough */ 8618328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8628328dd82Sandi selinger lsize = pnz + apnz_max; 8639566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8648a210135Sandi selinger } 865cf1a0672SHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 8669566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8678a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8688a210135Sandi selinger api[i + 1] = api[i] + apnz; 8698c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 870cf1a0672SHong Zhang } 871cf1a0672SHong Zhang /* off-diagonal portion of A */ 872cf1a0672SHong Zhang nzi = aoi[i + 1] - aoi[i]; 873cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 874cf1a0672SHong Zhang row = *aoj++; 875cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 876cf1a0672SHong Zhang Jptr = pj_oth + pi_oth[row]; 8778a210135Sandi selinger /* Expand list if it is not long enough */ 8788328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8798328dd82Sandi selinger lsize = pnz + apnz_max; 8809566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8818a210135Sandi selinger } 8828a210135Sandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 8839566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8848a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8858a210135Sandi selinger api[i + 1] = api[i] + apnz; 8868c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 887cf1a0672SHong Zhang } 8888c78258cSHong Zhang 8898c78258cSHong Zhang /* add missing diagonal entry */ 8908c78258cSHong Zhang if (C->force_diagonals) { 8918c78258cSHong Zhang j = i + rstart; /* column index */ 8929566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk)); 8938c78258cSHong Zhang } 8948c78258cSHong Zhang 895f84c536bSHong Zhang apnz = *lnk; 896cf1a0672SHong Zhang api[i + 1] = api[i] + apnz; 8978a210135Sandi selinger if (apnz > apnz_max) apnz_max = apnz; 898cf1a0672SHong Zhang 899cf1a0672SHong Zhang /* if free space is not available, double the total space in the list */ 900cf1a0672SHong Zhang if (current_space->local_remaining < apnz) { 9019566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 902cf1a0672SHong Zhang nspacedouble++; 903cf1a0672SHong Zhang } 904cf1a0672SHong Zhang 905cf1a0672SHong Zhang /* Copy data into free space, then initialize lnk */ 9069566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk)); 9079566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 9082205254eSKarl Rupp 909cf1a0672SHong Zhang current_space->array += apnz; 910cf1a0672SHong Zhang current_space->local_used += apnz; 911cf1a0672SHong Zhang current_space->local_remaining -= apnz; 912cf1a0672SHong Zhang } 913cf1a0672SHong Zhang 914cf1a0672SHong Zhang /* Allocate space for apj, initialize apj, and */ 915cf1a0672SHong Zhang /* destroy list of free space and other temporary array(s) */ 91684648c2dSPierre Jolivet PetscCall(PetscMalloc1(api[am], &ptap->apj)); 917cf1a0672SHong Zhang apj = ptap->apj; 9189566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 9199566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 920cf1a0672SHong Zhang 9214222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 9229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 9239566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 9249566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 9259566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 9269566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 927d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 928cf1a0672SHong Zhang 9294222ddf1SHong Zhang /* malloc apa for assembly C */ 9309566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(apnz_max, &ptap->apa)); 93117f75172Sandi selinger 9329566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 933799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 9349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 9359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 9369566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 937cf1a0672SHong Zhang 9384222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 9394222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 940cf1a0672SHong Zhang 9414222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 9426718818eSStefano Zampini C->product->data = ptap; 943cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult; 944cf1a0672SHong Zhang 945cf1a0672SHong Zhang /* set MatInfo */ 946118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 947cf1a0672SHong Zhang if (afill < 1.0) afill = 1.0; 9484222ddf1SHong Zhang C->info.mallocs = nspacedouble; 9494222ddf1SHong Zhang C->info.fill_ratio_given = fill; 9504222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 951cf1a0672SHong Zhang 952cf1a0672SHong Zhang #if defined(PETSC_USE_INFO) 953cf1a0672SHong Zhang if (api[am]) { 9549566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 9559566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 956cf1a0672SHong Zhang } else { 9579566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 958cf1a0672SHong Zhang } 959cf1a0672SHong Zhang #endif 9603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9611634b032SHong Zhang } 962f96d37fcSHong Zhang 963a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication. */ 964a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the */ 965a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once. */ 966d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out) 967d71ae5a4SJacob Faibussowitsch { 968a9d7e0ccSandi selinger int i = 0, j = 0, k = 0, l = 0; 969a9d7e0ccSandi selinger 970a9d7e0ccSandi selinger /* Traverse all three arrays */ 971a9d7e0ccSandi selinger while (i < size1 && j < size2 && k < size3) { 972a9d7e0ccSandi selinger if (in1[i] < in2[j] && in1[i] < in3[k]) { 973a9d7e0ccSandi selinger out[l++] = in1[i++]; 9749371c9d4SSatish Balay } else if (in2[j] < in1[i] && in2[j] < in3[k]) { 975a9d7e0ccSandi selinger out[l++] = in2[j++]; 9769371c9d4SSatish Balay } else if (in3[k] < in1[i] && in3[k] < in2[j]) { 977a9d7e0ccSandi selinger out[l++] = in3[k++]; 9789371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] < in3[k]) { 979a9d7e0ccSandi selinger out[l++] = in1[i]; 980a9d7e0ccSandi selinger i++, j++; 9819371c9d4SSatish Balay } else if (in1[i] == in3[k] && in1[i] < in2[j]) { 982a9d7e0ccSandi selinger out[l++] = in1[i]; 983a9d7e0ccSandi selinger i++, k++; 9849371c9d4SSatish Balay } else if (in3[k] == in2[j] && in2[j] < in1[i]) { 985a9d7e0ccSandi selinger out[l++] = in2[j]; 986a9d7e0ccSandi selinger k++, j++; 9879371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] == in3[k]) { 988a9d7e0ccSandi selinger out[l++] = in1[i]; 989a9d7e0ccSandi selinger i++, j++, k++; 990a9d7e0ccSandi selinger } 991a9d7e0ccSandi selinger } 992a9d7e0ccSandi selinger 993a9d7e0ccSandi selinger /* Traverse two remaining arrays */ 994a9d7e0ccSandi selinger while (i < size1 && j < size2) { 995a9d7e0ccSandi selinger if (in1[i] < in2[j]) { 996a9d7e0ccSandi selinger out[l++] = in1[i++]; 9979371c9d4SSatish Balay } else if (in1[i] > in2[j]) { 998a9d7e0ccSandi selinger out[l++] = in2[j++]; 9999371c9d4SSatish Balay } else { 1000a9d7e0ccSandi selinger out[l++] = in1[i]; 1001a9d7e0ccSandi selinger i++, j++; 1002a9d7e0ccSandi selinger } 1003a9d7e0ccSandi selinger } 1004a9d7e0ccSandi selinger 1005a9d7e0ccSandi selinger while (i < size1 && k < size3) { 1006a9d7e0ccSandi selinger if (in1[i] < in3[k]) { 1007a9d7e0ccSandi selinger out[l++] = in1[i++]; 10089371c9d4SSatish Balay } else if (in1[i] > in3[k]) { 1009a9d7e0ccSandi selinger out[l++] = in3[k++]; 10109371c9d4SSatish Balay } else { 1011a9d7e0ccSandi selinger out[l++] = in1[i]; 1012a9d7e0ccSandi selinger i++, k++; 1013a9d7e0ccSandi selinger } 1014a9d7e0ccSandi selinger } 1015a9d7e0ccSandi selinger 1016a9d7e0ccSandi selinger while (k < size3 && j < size2) { 1017a9d7e0ccSandi selinger if (in3[k] < in2[j]) { 1018a9d7e0ccSandi selinger out[l++] = in3[k++]; 10199371c9d4SSatish Balay } else if (in3[k] > in2[j]) { 1020a9d7e0ccSandi selinger out[l++] = in2[j++]; 10219371c9d4SSatish Balay } else { 1022a9d7e0ccSandi selinger out[l++] = in3[k]; 1023a9d7e0ccSandi selinger k++, j++; 1024a9d7e0ccSandi selinger } 1025a9d7e0ccSandi selinger } 1026a9d7e0ccSandi selinger 1027a9d7e0ccSandi selinger /* Traverse one remaining array */ 1028a9d7e0ccSandi selinger while (i < size1) out[l++] = in1[i++]; 1029a9d7e0ccSandi selinger while (j < size2) out[l++] = in2[j++]; 1030a9d7e0ccSandi selinger while (k < size3) out[l++] = in3[k++]; 1031a9d7e0ccSandi selinger 1032a9d7e0ccSandi selinger *size4 = l; 1033a9d7e0ccSandi selinger } 1034a9d7e0ccSandi selinger 103573b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and */ 103673b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential) */ 103773b67375Sandi selinger /* matrix-matrix multiplications. */ 1038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C) 1039d71ae5a4SJacob Faibussowitsch { 1040a9d7e0ccSandi selinger MPI_Comm comm; 1041a9d7e0ccSandi selinger PetscMPIInt size; 1042cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 1043a9d7e0ccSandi selinger PetscFreeSpaceList free_space_diag = NULL, current_space = NULL; 1044a9d7e0ccSandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1045f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc; 1046a9d7e0ccSandi selinger Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1047a9d7e0ccSandi selinger Mat_SeqAIJ *adpd_seq, *p_off, *aopoth_seq; 1048a9d7e0ccSandi selinger PetscInt adponz, adpdnz; 10497dbaa2c6Sandi selinger PetscInt *pi_loc, *dnz, *onz; 1050a9d7e0ccSandi selinger PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart; 10519371c9d4SSatish Balay PetscInt *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj; 1052a016958eSandi selinger PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend; 1053a9d7e0ccSandi selinger PetscBT lnkbt; 1054a9d7e0ccSandi selinger PetscReal afill; 1055a9d7e0ccSandi selinger PetscMPIInt rank; 1056a9d7e0ccSandi selinger Mat adpd, aopoth; 1057b92f168fSBarry Smith MatType mtype; 1058e83e5f86SFande Kong const char *prefix; 1059a9d7e0ccSandi selinger 1060a9d7e0ccSandi selinger PetscFunctionBegin; 10616718818eSStefano Zampini MatCheckProduct(C, 4); 106228b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 10639566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 10649566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10669566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend)); 1067a9d7e0ccSandi selinger 1068cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 10699566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1070a9d7e0ccSandi selinger 1071a9d7e0ccSandi selinger /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 10729566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1073a9d7e0ccSandi selinger 1074a9d7e0ccSandi selinger /* get P_loc by taking all local rows of P */ 10759566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 1076a9d7e0ccSandi selinger 1077f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 1078a9d7e0ccSandi selinger pi_loc = p_loc->i; 1079a9d7e0ccSandi selinger 1080a9d7e0ccSandi selinger /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */ 108184648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &api)); 108284648c2dSPierre Jolivet PetscCall(PetscMalloc1(am + 1, &adpoi)); 1083a9d7e0ccSandi selinger 1084a9d7e0ccSandi selinger adpoi[0] = 0; 1085a9d7e0ccSandi selinger ptap->api = api; 1086a9d7e0ccSandi selinger api[0] = 0; 1087a9d7e0ccSandi selinger 1088a9d7e0ccSandi selinger /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */ 10899566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 1090d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 1091a9d7e0ccSandi selinger 1092a9d7e0ccSandi selinger /* Symbolic calc of A_loc_diag * P_loc_diag */ 10939566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10949566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd)); 10959566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10969566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(adpd, prefix)); 10979566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_")); 10984222ddf1SHong Zhang 10999566063dSJacob Faibussowitsch PetscCall(MatProductSetType(adpd, MATPRODUCT_AB)); 11009566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(adpd, "sorted")); 11019566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(adpd, fill)); 11029566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(adpd)); 11038c78258cSHong Zhang 11048c78258cSHong Zhang adpd->force_diagonals = C->force_diagonals; 11059566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic(adpd)); 11064222ddf1SHong Zhang 1107a9d7e0ccSandi selinger adpd_seq = (Mat_SeqAIJ *)((adpd)->data); 11089371c9d4SSatish Balay adpdi = adpd_seq->i; 11099371c9d4SSatish Balay adpdj = adpd_seq->j; 1110f4f49eeaSPierre Jolivet p_off = (Mat_SeqAIJ *)p->B->data; 11119371c9d4SSatish Balay poff_i = p_off->i; 11129371c9d4SSatish Balay poff_j = p_off->j; 1113a9d7e0ccSandi selinger 111473b67375Sandi selinger /* j_temp stores indices of a result row before they are added to the linked list */ 111584648c2dSPierre Jolivet PetscCall(PetscMalloc1(pN, &j_temp)); 1116a9d7e0ccSandi selinger 1117a9d7e0ccSandi selinger /* Symbolic calc of the A_diag * p_loc_off */ 1118a9d7e0ccSandi selinger /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 11199566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag)); 1120a9d7e0ccSandi selinger current_space = free_space_diag; 1121a9d7e0ccSandi selinger 1122a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1123a9d7e0ccSandi selinger /* A_diag * P_loc_off */ 1124a9d7e0ccSandi selinger nzi = adi[i + 1] - adi[i]; 1125a9d7e0ccSandi selinger for (j = 0; j < nzi; j++) { 1126a9d7e0ccSandi selinger row = *adj++; 1127a9d7e0ccSandi selinger pnz = poff_i[row + 1] - poff_i[row]; 1128a9d7e0ccSandi selinger Jptr = poff_j + poff_i[row]; 1129ad540459SPierre Jolivet for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]]; 1130a9d7e0ccSandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 11319566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt)); 1132a9d7e0ccSandi selinger } 1133a9d7e0ccSandi selinger 1134a9d7e0ccSandi selinger adponz = lnk[0]; 1135a9d7e0ccSandi selinger adpoi[i + 1] = adpoi[i] + adponz; 1136a9d7e0ccSandi selinger 1137a9d7e0ccSandi selinger /* if free space is not available, double the total space in the list */ 1138a9d7e0ccSandi selinger if (current_space->local_remaining < adponz) { 11399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), ¤t_space)); 1140a9d7e0ccSandi selinger nspacedouble++; 1141a9d7e0ccSandi selinger } 1142a9d7e0ccSandi selinger 1143a9d7e0ccSandi selinger /* Copy data into free space, then initialize lnk */ 11449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt)); 1145a9d7e0ccSandi selinger 1146a9d7e0ccSandi selinger current_space->array += adponz; 1147a9d7e0ccSandi selinger current_space->local_used += adponz; 1148a9d7e0ccSandi selinger current_space->local_remaining -= adponz; 1149a9d7e0ccSandi selinger } 1150a9d7e0ccSandi selinger 1151a9d7e0ccSandi selinger /* Symbolic calc of A_off * P_oth */ 11529566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(a->B, prefix)); 11539566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_")); 11549566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth)); 11559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth)); 1156a9d7e0ccSandi selinger aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data); 11579371c9d4SSatish Balay aopothi = aopoth_seq->i; 11589371c9d4SSatish Balay aopothj = aopoth_seq->j; 1159a9d7e0ccSandi selinger 1160a9d7e0ccSandi selinger /* Allocate space for apj, adpj, aopj, ... */ 1161a9d7e0ccSandi selinger /* destroy lists of free space and other temporary array(s) */ 1162a9d7e0ccSandi selinger 116384648c2dSPierre Jolivet PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am], &ptap->apj)); 116484648c2dSPierre Jolivet PetscCall(PetscMalloc1(adpoi[am], &adpoj)); 1165a9d7e0ccSandi selinger 1166a9d7e0ccSandi selinger /* Copy from linked list to j-array */ 11679566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj)); 11689566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 1169a9d7e0ccSandi selinger 1170a9d7e0ccSandi selinger adpoJ = adpoj; 1171a9d7e0ccSandi selinger adpdJ = adpdj; 1172a9d7e0ccSandi selinger aopJ = aopothj; 1173a9d7e0ccSandi selinger apj = ptap->apj; 1174a9d7e0ccSandi selinger apJ = apj; /* still empty */ 1175a9d7e0ccSandi selinger 1176a9d7e0ccSandi selinger /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */ 1177a9d7e0ccSandi selinger /* A_diag * P_loc_diag to get A*P */ 1178a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1179a9d7e0ccSandi selinger aopnz = aopothi[i + 1] - aopothi[i]; 1180a9d7e0ccSandi selinger adponz = adpoi[i + 1] - adpoi[i]; 1181a9d7e0ccSandi selinger adpdnz = adpdi[i + 1] - adpdi[i]; 1182a9d7e0ccSandi selinger 1183a9d7e0ccSandi selinger /* Correct indices from A_diag*P_diag */ 1184ad540459SPierre Jolivet for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart; 1185a9d7e0ccSandi selinger /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */ 1186a9d7e0ccSandi selinger Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ); 11879566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz)); 1188a9d7e0ccSandi selinger 1189a9d7e0ccSandi selinger aopJ += aopnz; 1190a9d7e0ccSandi selinger adpoJ += adponz; 1191a9d7e0ccSandi selinger adpdJ += adpdnz; 1192a9d7e0ccSandi selinger apJ += apnz; 1193a9d7e0ccSandi selinger api[i + 1] = api[i] + apnz; 1194a9d7e0ccSandi selinger } 1195a9d7e0ccSandi selinger 1196a9d7e0ccSandi selinger /* malloc apa to store dense row A[i,:]*P */ 119784648c2dSPierre Jolivet PetscCall(PetscCalloc1(pN, &ptap->apa)); 1198a9d7e0ccSandi selinger 11994222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 12009566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 12019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 12029566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 12039566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 12049566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1205d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 120617f75172Sandi selinger 12079566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 1208799b351eSPierre Jolivet PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 12099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 12109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 12119566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 121217f75172Sandi selinger 12134222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 12144222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1215a9d7e0ccSandi selinger 12164222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 12176718818eSStefano Zampini C->product->data = ptap; 1218cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_MatMatMult; 1219a9d7e0ccSandi selinger 1220a9d7e0ccSandi selinger /* set MatInfo */ 122173b67375Sandi selinger afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 122273b67375Sandi selinger if (afill < 1.0) afill = 1.0; 12234222ddf1SHong Zhang C->info.mallocs = nspacedouble; 12244222ddf1SHong Zhang C->info.fill_ratio_given = fill; 12254222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1226a9d7e0ccSandi selinger 1227a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO) 1228a9d7e0ccSandi selinger if (api[am]) { 12299566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 12309566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1231a9d7e0ccSandi selinger } else { 12329566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1233a9d7e0ccSandi selinger } 1234a9d7e0ccSandi selinger #endif 1235a9d7e0ccSandi selinger 12369566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aopoth)); 12379566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adpd)); 12389566063dSJacob Faibussowitsch PetscCall(PetscFree(j_temp)); 12399566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoj)); 12409566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoi)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1242a9d7e0ccSandi selinger } 1243a9d7e0ccSandi selinger 1244c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */ 1245d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C) 1246d71ae5a4SJacob Faibussowitsch { 1247cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 124860552ceaSHong Zhang Mat Pt; 1249c216dbf3SHong Zhang 1250c216dbf3SHong Zhang PetscFunctionBegin; 12516718818eSStefano Zampini MatCheckProduct(C, 3); 1252cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 125328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 125428b400f6SJacob Faibussowitsch PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 125560552ceaSHong Zhang 125660552ceaSHong Zhang Pt = ptap->Pt; 12571cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(P, Pt)); 12589566063dSJacob Faibussowitsch PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt)); 12599566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C)); 12603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1261f96d37fcSHong Zhang } 1262f96d37fcSHong Zhang 1263c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */ 1264d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C) 1265d71ae5a4SJacob Faibussowitsch { 1266cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 12676718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1268912837bbSHong Zhang MPI_Comm comm; 1269912837bbSHong Zhang PetscMPIInt size, rank; 1270912837bbSHong Zhang PetscFreeSpaceList free_space = NULL, current_space = NULL; 12714ede91e3SHong Zhang PetscInt pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n; 12726497c311SBarry Smith PetscInt *lnk, i, k, rstart; 1273912837bbSHong Zhang PetscBT lnkbt; 12746497c311SBarry Smith PetscMPIInt tagi, tagj, *len_si, *len_s, *len_ri, nrecv, proc, nsend; 1275ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted = 0; 12768c78258cSHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols; 12776497c311SBarry Smith PetscInt len, *dnz, *onz, *owners, nzi; 1278912837bbSHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1279912837bbSHong Zhang MPI_Request *swaits, *rwaits; 1280912837bbSHong Zhang MPI_Status *sstatus, rstatus; 1281912837bbSHong Zhang PetscLayout rowmap; 1282912837bbSHong Zhang PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */ 1283912837bbSHong Zhang PetscMPIInt *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */ 12847f3e1f30SHong Zhang PetscInt *Jptr, *prmap = p->garray, con, j, Crmax; 12854ede91e3SHong Zhang Mat_SeqAIJ *a_loc, *c_loc, *c_oth; 1286eec179cfSJacob Faibussowitsch PetscHMapI ta; 1287b92f168fSBarry Smith MatType mtype; 1288e83e5f86SFande Kong const char *prefix; 1289912837bbSHong Zhang 1290912837bbSHong Zhang PetscFunctionBegin; 12919566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 12929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 12939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1294912837bbSHong Zhang 12954222ddf1SHong Zhang /* create symbolic parallel matrix C */ 12969566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 12979566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 1298912837bbSHong Zhang 12994222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 1300912837bbSHong Zhang 1301cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 13029566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1303912837bbSHong Zhang 1304912837bbSHong Zhang /* (0) compute Rd = Pd^T, Ro = Po^T */ 1305acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd)); 1306acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro)); 1307912837bbSHong Zhang 1308669e9c86SHong Zhang /* (1) compute symbolic A_loc */ 13099566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc)); 1310912837bbSHong Zhang 13114ede91e3SHong Zhang /* (2-1) compute symbolic C_oth = Ro*A_loc */ 13129566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 13139566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix)); 13149566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_")); 13159566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth)); 13169566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth)); 1317912837bbSHong Zhang 1318912837bbSHong Zhang /* (3) send coj of C_oth to other processors */ 1319912837bbSHong Zhang /* determine row ownership */ 13209566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &rowmap)); 1321912837bbSHong Zhang rowmap->n = pn; 1322912837bbSHong Zhang rowmap->bs = 1; 13239566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rowmap)); 1324912837bbSHong Zhang owners = rowmap->range; 1325912837bbSHong Zhang 1326912837bbSHong Zhang /* determine the number of messages to send, their lengths */ 132784648c2dSPierre Jolivet PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 1, &owners_co)); 13289566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_s, size)); 13299566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_si, size)); 1330912837bbSHong Zhang 1331912837bbSHong Zhang c_oth = (Mat_SeqAIJ *)ptap->C_oth->data; 13329371c9d4SSatish Balay coi = c_oth->i; 13339371c9d4SSatish Balay coj = c_oth->j; 1334912837bbSHong Zhang con = ptap->C_oth->rmap->n; 1335912837bbSHong Zhang proc = 0; 1336912837bbSHong Zhang for (i = 0; i < con; i++) { 1337912837bbSHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 13387f3e1f30SHong Zhang len_si[proc]++; /* num of rows in Co(=Pt*A) to be sent to [proc] */ 1339912837bbSHong Zhang len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */ 1340912837bbSHong Zhang } 1341912837bbSHong Zhang 1342912837bbSHong Zhang len = 0; /* max length of buf_si[], see (4) */ 1343912837bbSHong Zhang owners_co[0] = 0; 1344912837bbSHong Zhang nsend = 0; 1345912837bbSHong Zhang for (proc = 0; proc < size; proc++) { 1346912837bbSHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1347912837bbSHong Zhang if (len_s[proc]) { 1348912837bbSHong Zhang nsend++; 1349912837bbSHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */ 1350912837bbSHong Zhang len += len_si[proc]; 1351912837bbSHong Zhang } 1352912837bbSHong Zhang } 1353912837bbSHong Zhang 1354912837bbSHong Zhang /* determine the number and length of messages to receive for coi and coj */ 13559566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv)); 13569566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri)); 1357912837bbSHong Zhang 1358912837bbSHong Zhang /* post the Irecv and Isend of coj */ 13599566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 13609566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits)); 136184648c2dSPierre Jolivet PetscCall(PetscMalloc1(nsend, &swaits)); 1362912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1363912837bbSHong Zhang if (!len_s[proc]) continue; 1364912837bbSHong Zhang i = owners_co[proc]; 13656497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1366912837bbSHong Zhang k++; 1367912837bbSHong Zhang } 1368912837bbSHong Zhang 13697f3e1f30SHong Zhang /* (2-2) compute symbolic C_loc = Rd*A_loc */ 13709566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix)); 13719566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_")); 13729566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc)); 13739566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc)); 1374912837bbSHong Zhang c_loc = (Mat_SeqAIJ *)ptap->C_loc->data; 1375912837bbSHong Zhang 1376912837bbSHong Zhang /* receives coj are complete */ 137748a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13789566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13799566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1380912837bbSHong Zhang 1381912837bbSHong Zhang /* add received column indices into ta to update Crmax */ 1382f4f49eeaSPierre Jolivet a_loc = (Mat_SeqAIJ *)ptap->A_loc->data; 1383669e9c86SHong Zhang 1384669e9c86SHong Zhang /* create and initialize a linked list */ 1385eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */ 13864ede91e3SHong Zhang MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta); 1387669e9c86SHong Zhang 1388912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1389912837bbSHong Zhang Jptr = buf_rj[k]; 1390c76ffc5fSJacob Faibussowitsch for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 1391912837bbSHong Zhang } 1392eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 1393eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 1394912837bbSHong Zhang 1395912837bbSHong Zhang /* (4) send and recv coi */ 13969566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 13979566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits)); 139884648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s)); 1399912837bbSHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1400912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1401912837bbSHong Zhang if (!len_s[proc]) continue; 1402912837bbSHong Zhang /* form outgoing message for i-structure: 1403912837bbSHong Zhang buf_si[0]: nrows to be sent 1404912837bbSHong Zhang [1:nrows]: row index (global) 1405912837bbSHong Zhang [nrows+1:2*nrows+1]: i-structure index 1406912837bbSHong Zhang */ 1407912837bbSHong Zhang nrows = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */ 1408912837bbSHong Zhang buf_si_i = buf_si + nrows + 1; 1409912837bbSHong Zhang buf_si[0] = nrows; 1410912837bbSHong Zhang buf_si_i[0] = 0; 1411912837bbSHong Zhang nrows = 0; 1412912837bbSHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1413912837bbSHong Zhang nzi = coi[i + 1] - coi[i]; 1414912837bbSHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1415912837bbSHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1416912837bbSHong Zhang nrows++; 1417912837bbSHong Zhang } 14186497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1419912837bbSHong Zhang k++; 1420912837bbSHong Zhang buf_si += len_si[proc]; 1421912837bbSHong Zhang } 142248a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 14239566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 14249566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1425912837bbSHong Zhang 14269566063dSJacob Faibussowitsch PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co)); 14279566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 14289566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 14299566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1430912837bbSHong Zhang 14314222ddf1SHong Zhang /* (5) compute the local portion of C */ 1432bbea24aaSStefano Zampini /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */ 14339566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(Crmax, &free_space)); 1434912837bbSHong Zhang current_space = free_space; 1435912837bbSHong Zhang 14369566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci)); 1437912837bbSHong Zhang for (k = 0; k < nrecv; k++) { 1438912837bbSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1439912837bbSHong Zhang nrows = *buf_ri_k[k]; 1440912837bbSHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1441a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1442912837bbSHong Zhang } 1443912837bbSHong Zhang 1444d0609cedSBarry Smith MatPreallocateBegin(comm, pn, an, dnz, onz); 14459566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt)); 14468c78258cSHong Zhang for (i = 0; i < pn; i++) { /* for each local row of C */ 14474222ddf1SHong Zhang /* add C_loc into C */ 1448912837bbSHong Zhang nzi = c_loc->i[i + 1] - c_loc->i[i]; 1449912837bbSHong Zhang Jptr = c_loc->j + c_loc->i[i]; 14509566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 1451912837bbSHong Zhang 1452912837bbSHong Zhang /* add received col data into lnk */ 1453912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1454912837bbSHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1455912837bbSHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1456912837bbSHong Zhang Jptr = buf_rj[k] + *nextci[k]; 14579566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 14589371c9d4SSatish Balay nextrow[k]++; 14599371c9d4SSatish Balay nextci[k]++; 1460912837bbSHong Zhang } 1461912837bbSHong Zhang } 14628c78258cSHong Zhang 14638c78258cSHong Zhang /* add missing diagonal entry */ 14648c78258cSHong Zhang if (C->force_diagonals) { 14658c78258cSHong Zhang k = i + owners[rank]; /* column index */ 14669566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt)); 14678c78258cSHong Zhang } 14688c78258cSHong Zhang 1469912837bbSHong Zhang nzi = lnk[0]; 1470912837bbSHong Zhang 1471912837bbSHong Zhang /* copy data into free space, then initialize lnk */ 14729566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt)); 14739566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz)); 1474912837bbSHong Zhang } 14759566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 14769566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 14779566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceDestroy(free_space)); 1478912837bbSHong Zhang 1479912837bbSHong Zhang /* local sizes and preallocation */ 14809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE)); 148158b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs)); 148258b7e2c1SStefano Zampini PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs)); 14839566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1484d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 1485912837bbSHong Zhang 148669be949aSStefano Zampini /* add C_loc and C_oth to C */ 14879566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, NULL)); 148869be949aSStefano Zampini for (i = 0; i < pn; i++) { 14898c78258cSHong Zhang ncols = c_loc->i[i + 1] - c_loc->i[i]; 14908c78258cSHong Zhang cols = c_loc->j + c_loc->i[i]; 14918c78258cSHong Zhang row = rstart + i; 14929566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 14938c78258cSHong Zhang 149448a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES)); 149569be949aSStefano Zampini } 149669be949aSStefano Zampini for (i = 0; i < con; i++) { 14978c78258cSHong Zhang ncols = c_oth->i[i + 1] - c_oth->i[i]; 14988c78258cSHong Zhang cols = c_oth->j + c_oth->i[i]; 14998c78258cSHong Zhang row = prmap[i]; 15009566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 150169be949aSStefano Zampini } 15029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 15039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 15049566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 150569be949aSStefano Zampini 1506912837bbSHong Zhang /* members in merge */ 15079566063dSJacob Faibussowitsch PetscCall(PetscFree(id_r)); 15089566063dSJacob Faibussowitsch PetscCall(PetscFree(len_r)); 15099566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri[0])); 15109566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri)); 15119566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj[0])); 15129566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj)); 15139566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rowmap)); 1514912837bbSHong Zhang 15154222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 15166718818eSStefano Zampini C->product->data = ptap; 1517cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP; 15183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1519912837bbSHong Zhang } 1520912837bbSHong Zhang 1521d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C) 1522d71ae5a4SJacob Faibussowitsch { 15236718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1524669e9c86SHong Zhang Mat_SeqAIJ *c_seq; 1525cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 1526669e9c86SHong Zhang Mat A_loc, C_loc, C_oth; 1527912837bbSHong Zhang PetscInt i, rstart, rend, cm, ncols, row; 1528912837bbSHong Zhang const PetscInt *cols; 1529912837bbSHong Zhang const PetscScalar *vals; 1530912837bbSHong Zhang 1531912837bbSHong Zhang PetscFunctionBegin; 15326718818eSStefano Zampini MatCheckProduct(C, 3); 1533cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 153428b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 153528b400f6SJacob Faibussowitsch PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15369566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(C)); 1537912837bbSHong Zhang 1538669e9c86SHong Zhang /* These matrices are obtained in MatTransposeMatMultSymbolic() */ 1539669e9c86SHong Zhang /* 1) get R = Pd^T, Ro = Po^T */ 15401cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd)); 1541acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd)); 15421cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro)); 1543acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro)); 1544669e9c86SHong Zhang 1545669e9c86SHong Zhang /* 2) compute numeric A_loc */ 15469566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc)); 1547912837bbSHong Zhang 1548669e9c86SHong Zhang /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */ 15494ede91e3SHong Zhang A_loc = ptap->A_loc; 1550f4f49eeaSPierre Jolivet PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc)); 1551f4f49eeaSPierre Jolivet PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth)); 1552912837bbSHong Zhang C_loc = ptap->C_loc; 1553912837bbSHong Zhang C_oth = ptap->C_oth; 1554912837bbSHong Zhang 155569be949aSStefano Zampini /* add C_loc and C_oth to C */ 15569566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, &rend)); 1557912837bbSHong Zhang 1558912837bbSHong Zhang /* C_loc -> C */ 1559912837bbSHong Zhang cm = C_loc->rmap->N; 1560912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_loc->data; 1561912837bbSHong Zhang cols = c_seq->j; 1562912837bbSHong Zhang vals = c_seq->a; 1563912837bbSHong Zhang for (i = 0; i < cm; i++) { 1564912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1565912837bbSHong Zhang row = rstart + i; 15669566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15679371c9d4SSatish Balay cols += ncols; 15689371c9d4SSatish Balay vals += ncols; 1569912837bbSHong Zhang } 1570912837bbSHong Zhang 1571912837bbSHong Zhang /* Co -> C, off-processor part */ 1572912837bbSHong Zhang cm = C_oth->rmap->N; 1573912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_oth->data; 1574912837bbSHong Zhang cols = c_seq->j; 1575912837bbSHong Zhang vals = c_seq->a; 1576912837bbSHong Zhang for (i = 0; i < cm; i++) { 1577912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1578912837bbSHong Zhang row = p->garray[i]; 15799566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15809371c9d4SSatish Balay cols += ncols; 15819371c9d4SSatish Balay vals += ncols; 1582912837bbSHong Zhang } 15839566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 15849566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 15859566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 15863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1587912837bbSHong Zhang } 1588912837bbSHong Zhang 1589d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C) 1590d71ae5a4SJacob Faibussowitsch { 1591cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 15926718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1593f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data; 1594cc1eb50dSBarry Smith MatProductCtx_APMPI *ap; 1595e745005bSHong Zhang PetscInt *adj; 1596e745005bSHong Zhang PetscInt i, j, k, anz, pnz, row, *cj, nexta; 1597e745005bSHong Zhang MatScalar *ada, *ca, valtmp; 1598d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n; 1599ce94432eSBarry Smith MPI_Comm comm; 16006497c311SBarry Smith PetscMPIInt size, rank, taga, *len_s, proc; 16016497c311SBarry Smith PetscInt *owners, nrows, **buf_ri_k, **nextrow, **nextci; 1602d6ab1dc0SHong Zhang PetscInt **buf_ri, **buf_rj; 1603d6ab1dc0SHong Zhang PetscInt cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */ 1604d6ab1dc0SHong Zhang MPI_Request *s_waits, *r_waits; 1605d6ab1dc0SHong Zhang MPI_Status *status; 1606d6ab1dc0SHong Zhang MatScalar **abuf_r, *ba_i, *pA, *coa, *ba; 1607ce496241SStefano Zampini const PetscScalar *dummy; 16084e201bd7SHong Zhang PetscInt *ai, *aj, *coi, *coj, *poJ, *pdJ; 1609d6ab1dc0SHong Zhang Mat A_loc; 1610d6ab1dc0SHong Zhang Mat_SeqAIJ *a_loc; 1611d6ab1dc0SHong Zhang 1612d6ab1dc0SHong Zhang PetscFunctionBegin; 16136718818eSStefano Zampini MatCheckProduct(C, 3); 1614cc1eb50dSBarry Smith ap = (MatProductCtx_APMPI *)C->product->data; 16151cdffd5eSHong Zhang PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data"); 16161cdffd5eSHong Zhang PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 16179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 16189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 16199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1620d6ab1dc0SHong Zhang 16211cdffd5eSHong Zhang merge = ap->merge; 1622d6ab1dc0SHong Zhang 1623e745005bSHong Zhang /* 2) compute numeric C_seq = P_loc^T*A_loc */ 1624d6ab1dc0SHong Zhang /* get data from symbolic products */ 16259371c9d4SSatish Balay coi = merge->coi; 16269371c9d4SSatish Balay coj = merge->coj; 162784648c2dSPierre Jolivet PetscCall(PetscCalloc1(coi[pon], &coa)); 16289371c9d4SSatish Balay bi = merge->bi; 16299371c9d4SSatish Balay bj = merge->bj; 1630d6ab1dc0SHong Zhang owners = merge->rowmap->range; 163184648c2dSPierre Jolivet PetscCall(PetscCalloc1(bi[cm], &ba)); 1632d6ab1dc0SHong Zhang 1633d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 16341cdffd5eSHong Zhang A_loc = ap->A_loc; 16359566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc)); 163657508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data; 1637d6ab1dc0SHong Zhang ai = a_loc->i; 1638d6ab1dc0SHong Zhang aj = a_loc->j; 1639d6ab1dc0SHong Zhang 1640ce496241SStefano Zampini /* trigger copy to CPU */ 16419566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy)); 16429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy)); 16439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy)); 16449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy)); 1645d6ab1dc0SHong Zhang for (i = 0; i < am; i++) { 1646d6ab1dc0SHong Zhang anz = ai[i + 1] - ai[i]; 1647d6ab1dc0SHong Zhang adj = aj + ai[i]; 1648d6ab1dc0SHong Zhang ada = a_loc->a + ai[i]; 1649d6ab1dc0SHong Zhang 1650d6ab1dc0SHong Zhang /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */ 1651d6ab1dc0SHong Zhang /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */ 1652d6ab1dc0SHong Zhang pnz = po->i[i + 1] - po->i[i]; 1653d6ab1dc0SHong Zhang poJ = po->j + po->i[i]; 1654d6ab1dc0SHong Zhang pA = po->a + po->i[i]; 1655d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1656d6ab1dc0SHong Zhang row = poJ[j]; 1657d6ab1dc0SHong Zhang cj = coj + coi[row]; 1658d6ab1dc0SHong Zhang ca = coa + coi[row]; 1659e745005bSHong Zhang /* perform sparse axpy */ 1660e745005bSHong Zhang nexta = 0; 1661d6ab1dc0SHong Zhang valtmp = pA[j]; 1662e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1663e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1664e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1665e745005bSHong Zhang nexta++; 1666d6ab1dc0SHong Zhang } 1667e745005bSHong Zhang } 16689566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1669d6ab1dc0SHong Zhang } 1670d6ab1dc0SHong Zhang 1671d6ab1dc0SHong Zhang /* put the value into Cd (diagonal part) */ 1672d6ab1dc0SHong Zhang pnz = pd->i[i + 1] - pd->i[i]; 1673d6ab1dc0SHong Zhang pdJ = pd->j + pd->i[i]; 1674d6ab1dc0SHong Zhang pA = pd->a + pd->i[i]; 1675d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1676d6ab1dc0SHong Zhang row = pdJ[j]; 1677d6ab1dc0SHong Zhang cj = bj + bi[row]; 1678d6ab1dc0SHong Zhang ca = ba + bi[row]; 1679e745005bSHong Zhang /* perform sparse axpy */ 1680e745005bSHong Zhang nexta = 0; 1681d6ab1dc0SHong Zhang valtmp = pA[j]; 1682e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1683e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1684e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1685e745005bSHong Zhang nexta++; 1686d6ab1dc0SHong Zhang } 1687e745005bSHong Zhang } 16889566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1689d6ab1dc0SHong Zhang } 1690d6ab1dc0SHong Zhang } 1691d6ab1dc0SHong Zhang 1692d6ab1dc0SHong Zhang /* 3) send and recv matrix values coa */ 1693d6ab1dc0SHong Zhang buf_ri = merge->buf_ri; 1694d6ab1dc0SHong Zhang buf_rj = merge->buf_rj; 1695d6ab1dc0SHong Zhang len_s = merge->len_s; 16969566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &taga)); 16979566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 1698d6ab1dc0SHong Zhang 169984648c2dSPierre Jolivet PetscCall(PetscMalloc2(merge->nsend, &s_waits, size, &status)); 1700d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1701d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1702d6ab1dc0SHong Zhang i = merge->owners_co[proc]; 17036497c311SBarry Smith PetscCallMPI(MPIU_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 1704d6ab1dc0SHong Zhang k++; 1705d6ab1dc0SHong Zhang } 17069566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 17079566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 1708d6ab1dc0SHong Zhang 17099566063dSJacob Faibussowitsch PetscCall(PetscFree2(s_waits, status)); 17109566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 17119566063dSJacob Faibussowitsch PetscCall(PetscFree(coa)); 1712d6ab1dc0SHong Zhang 1713d6ab1dc0SHong Zhang /* 4) insert local Cseq and received values into Cmpi */ 17149566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1715d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1716e745005bSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1717f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 1718d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1719a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1720d6ab1dc0SHong Zhang } 1721d6ab1dc0SHong Zhang 1722d6ab1dc0SHong Zhang for (i = 0; i < cm; i++) { 1723d6ab1dc0SHong Zhang row = owners[rank] + i; /* global row index of C_seq */ 1724d6ab1dc0SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of C */ 1725d6ab1dc0SHong Zhang ba_i = ba + bi[i]; 1726d6ab1dc0SHong Zhang bnz = bi[i + 1] - bi[i]; 1727d6ab1dc0SHong Zhang /* add received vals into ba */ 1728d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1729d6ab1dc0SHong Zhang /* i-th row */ 1730d6ab1dc0SHong Zhang if (i == *nextrow[k]) { 1731d6ab1dc0SHong Zhang cnz = *(nextci[k] + 1) - *nextci[k]; 1732f4f49eeaSPierre Jolivet cj = buf_rj[k] + *nextci[k]; 1733f4f49eeaSPierre Jolivet ca = abuf_r[k] + *nextci[k]; 1734d6ab1dc0SHong Zhang nextcj = 0; 1735d6ab1dc0SHong Zhang for (j = 0; nextcj < cnz; j++) { 1736d6ab1dc0SHong Zhang if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */ 1737d6ab1dc0SHong Zhang ba_i[j] += ca[nextcj++]; 1738d6ab1dc0SHong Zhang } 1739d6ab1dc0SHong Zhang } 17409371c9d4SSatish Balay nextrow[k]++; 17419371c9d4SSatish Balay nextci[k]++; 17429566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * cnz)); 1743d6ab1dc0SHong Zhang } 1744d6ab1dc0SHong Zhang } 17459566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES)); 1746d6ab1dc0SHong Zhang } 17479566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 17489566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1749d6ab1dc0SHong Zhang 17509566063dSJacob Faibussowitsch PetscCall(PetscFree(ba)); 17519566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 17529566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 17539566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 17543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1755d6ab1dc0SHong Zhang } 1756d6ab1dc0SHong Zhang 1757d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C) 1758d71ae5a4SJacob Faibussowitsch { 1759b419842dSStefano Zampini Mat A_loc; 1760cc1eb50dSBarry Smith MatProductCtx_APMPI *ap; 17610298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 17626718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data; 1763d6ab1dc0SHong Zhang PetscInt *pdti, *pdtj, *poti, *potj, *ptJ; 1764d6ab1dc0SHong Zhang PetscInt nnz; 1765d6ab1dc0SHong Zhang PetscInt *lnk, *owners_co, *coi, *coj, i, k, pnz, row; 1766d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, pn = P->cmap->n; 1767ce94432eSBarry Smith MPI_Comm comm; 17686497c311SBarry Smith PetscMPIInt size, rank, tagi, tagj, *len_si, *len_s, *len_ri, proc; 1769d6ab1dc0SHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k; 17706497c311SBarry Smith PetscInt len, *dnz, *onz, *owners; 1771d6ab1dc0SHong Zhang PetscInt nzi, *bi, *bj; 1772d6ab1dc0SHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1773d6ab1dc0SHong Zhang MPI_Request *swaits, *rwaits; 1774d6ab1dc0SHong Zhang MPI_Status *sstatus, rstatus; 1775cc1eb50dSBarry Smith MatMergeSeqsToMPI *merge; 1776d6ab1dc0SHong Zhang PetscInt *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j; 1777d6ab1dc0SHong Zhang PetscReal afill = 1.0, afill_tmp; 1778eec179cfSJacob Faibussowitsch PetscInt rstart = P->cmap->rstart, rmax, Armax; 1779b419842dSStefano Zampini Mat_SeqAIJ *a_loc; 1780eec179cfSJacob Faibussowitsch PetscHMapI ta; 1781b92f168fSBarry Smith MatType mtype; 1782d6ab1dc0SHong Zhang 1783d6ab1dc0SHong Zhang PetscFunctionBegin; 17849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1785d6ab1dc0SHong Zhang /* check if matrix local sizes are compatible */ 17869371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, 17879371c9d4SSatish Balay A->rmap->rend, P->rmap->rstart, P->rmap->rend); 1788d6ab1dc0SHong Zhang 17899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1791d6ab1dc0SHong Zhang 1792cc1eb50dSBarry Smith /* create struct MatProductCtx_APMPI and attached it to C later */ 17931cdffd5eSHong Zhang PetscCall(PetscNew(&ap)); 1794d6ab1dc0SHong Zhang 1795d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 17969566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc)); 17972205254eSKarl Rupp 17981cdffd5eSHong Zhang ap->A_loc = A_loc; 179957508eceSPierre Jolivet a_loc = (Mat_SeqAIJ *)A_loc->data; 1800d6ab1dc0SHong Zhang ai = a_loc->i; 1801d6ab1dc0SHong Zhang aj = a_loc->j; 1802d6ab1dc0SHong Zhang 1803d6ab1dc0SHong Zhang /* determine symbolic Co=(p->B)^T*A - send to others */ 18049566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 18059566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 1806d6ab1dc0SHong Zhang pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors 1807d6ab1dc0SHong Zhang >= (num of nonzero rows of C_seq) - pn */ 18089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pon + 1, &coi)); 1809d6ab1dc0SHong Zhang coi[0] = 0; 1810d6ab1dc0SHong Zhang 1811d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */ 1812f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am])); 18139566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1814d6ab1dc0SHong Zhang current_space = free_space; 181519f0e57aSHong Zhang 1816d6ab1dc0SHong Zhang /* create and initialize a linked list */ 1817eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta)); 18184b38b95cSHong Zhang MatRowMergeMax_SeqAIJ(a_loc, am, ta); 1819eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 182033ba5e2fSHong Zhang 18219566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1822d6ab1dc0SHong Zhang 1823d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1824d6ab1dc0SHong Zhang pnz = poti[i + 1] - poti[i]; 1825d6ab1dc0SHong Zhang ptJ = potj + poti[i]; 1826d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1827d6ab1dc0SHong Zhang row = ptJ[j]; /* row of A_loc == col of Pot */ 1828d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1829d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1830d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 18319566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1832d6ab1dc0SHong Zhang } 1833d6ab1dc0SHong Zhang nnz = lnk[0]; 1834d6ab1dc0SHong Zhang 1835d6ab1dc0SHong Zhang /* If free space is not available, double the total space in the list */ 1836d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 18379566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1838d6ab1dc0SHong Zhang nspacedouble++; 1839d6ab1dc0SHong Zhang } 1840d6ab1dc0SHong Zhang 1841d6ab1dc0SHong Zhang /* Copy data into free space, and zero out denserows */ 18429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 18432205254eSKarl Rupp 1844d6ab1dc0SHong Zhang current_space->array += nnz; 1845d6ab1dc0SHong Zhang current_space->local_used += nnz; 1846d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 18472205254eSKarl Rupp 1848d6ab1dc0SHong Zhang coi[i + 1] = coi[i] + nnz; 1849d6ab1dc0SHong Zhang } 1850d6ab1dc0SHong Zhang 185184648c2dSPierre Jolivet PetscCall(PetscMalloc1(coi[pon], &coj)); 18529566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, coj)); 18539566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */ 18542205254eSKarl Rupp 1855118727c9SMark F. Adams afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1); 1856d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 1857d6ab1dc0SHong Zhang 1858d6ab1dc0SHong Zhang /* send j-array (coj) of Co to other processors */ 1859d6ab1dc0SHong Zhang /* determine row ownership */ 18609566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 18619566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 18622205254eSKarl Rupp 1863d6ab1dc0SHong Zhang merge->rowmap->n = pn; 1864d6ab1dc0SHong Zhang merge->rowmap->bs = 1; 18652205254eSKarl Rupp 18669566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 1867d6ab1dc0SHong Zhang owners = merge->rowmap->range; 1868d6ab1dc0SHong Zhang 1869d6ab1dc0SHong Zhang /* determine the number of messages to send, their lengths */ 18709566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &len_si)); 18719566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &merge->len_s)); 18722205254eSKarl Rupp 1873d6ab1dc0SHong Zhang len_s = merge->len_s; 1874d6ab1dc0SHong Zhang merge->nsend = 0; 1875d6ab1dc0SHong Zhang 187684648c2dSPierre Jolivet PetscCall(PetscMalloc1(size + 1, &owners_co)); 1877d6ab1dc0SHong Zhang 1878d6ab1dc0SHong Zhang proc = 0; 1879d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1880d6ab1dc0SHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 1881d6ab1dc0SHong Zhang len_si[proc]++; /* num of rows in Co to be sent to [proc] */ 1882d6ab1dc0SHong Zhang len_s[proc] += coi[i + 1] - coi[i]; 1883d6ab1dc0SHong Zhang } 1884d6ab1dc0SHong Zhang 1885d6ab1dc0SHong Zhang len = 0; /* max length of buf_si[] */ 1886d6ab1dc0SHong Zhang owners_co[0] = 0; 1887d6ab1dc0SHong Zhang for (proc = 0; proc < size; proc++) { 1888d6ab1dc0SHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1889216f1e5cSPierre Jolivet if (len_s[proc]) { 1890d6ab1dc0SHong Zhang merge->nsend++; 1891d6ab1dc0SHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); 1892d6ab1dc0SHong Zhang len += len_si[proc]; 1893d6ab1dc0SHong Zhang } 1894d6ab1dc0SHong Zhang } 1895d6ab1dc0SHong Zhang 1896d6ab1dc0SHong Zhang /* determine the number and length of messages to receive for coi and coj */ 18979566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 18989566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 1899d6ab1dc0SHong Zhang 1900d6ab1dc0SHong Zhang /* post the Irecv and Isend of coj */ 19019566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 19029566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits)); 190384648c2dSPierre Jolivet PetscCall(PetscMalloc1(merge->nsend, &swaits)); 1904d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1905d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1906d6ab1dc0SHong Zhang i = owners_co[proc]; 19076497c311SBarry Smith PetscCallMPI(MPIU_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1908d6ab1dc0SHong Zhang k++; 1909d6ab1dc0SHong Zhang } 1910d6ab1dc0SHong Zhang 1911d6ab1dc0SHong Zhang /* receives and sends of coj are complete */ 19129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &sstatus)); 1913d6ab1dc0SHong Zhang for (i = 0; i < merge->nrecv; i++) { 1914ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1916d6ab1dc0SHong Zhang } 19179566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19189566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 1919d6ab1dc0SHong Zhang 19200acc65b4SHong Zhang /* add received column indices into table to update Armax */ 1921c4762a1bSJed Brown /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */ 19220acc65b4SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 19230acc65b4SHong Zhang Jptr = buf_rj[k]; 1924c76ffc5fSJacob Faibussowitsch for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 19250acc65b4SHong Zhang } 1926eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 19270acc65b4SHong Zhang 1928d6ab1dc0SHong Zhang /* send and recv coi */ 19299566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 19309566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits)); 193184648c2dSPierre Jolivet PetscCall(PetscMalloc1(len, &buf_s)); 1932d6ab1dc0SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1933d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1934d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1935d6ab1dc0SHong Zhang /* form outgoing message for i-structure: 1936d6ab1dc0SHong Zhang buf_si[0]: nrows to be sent 1937d6ab1dc0SHong Zhang [1:nrows]: row index (global) 1938d6ab1dc0SHong Zhang [nrows+1:2*nrows+1]: i-structure index 1939d6ab1dc0SHong Zhang */ 1940d6ab1dc0SHong Zhang nrows = len_si[proc] / 2 - 1; 1941d6ab1dc0SHong Zhang buf_si_i = buf_si + nrows + 1; 1942d6ab1dc0SHong Zhang buf_si[0] = nrows; 1943d6ab1dc0SHong Zhang buf_si_i[0] = 0; 1944d6ab1dc0SHong Zhang nrows = 0; 1945d6ab1dc0SHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1946d6ab1dc0SHong Zhang nzi = coi[i + 1] - coi[i]; 1947d6ab1dc0SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1948d6ab1dc0SHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1949d6ab1dc0SHong Zhang nrows++; 1950d6ab1dc0SHong Zhang } 19516497c311SBarry Smith PetscCallMPI(MPIU_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1952d6ab1dc0SHong Zhang k++; 1953d6ab1dc0SHong Zhang buf_si += len_si[proc]; 1954d6ab1dc0SHong Zhang } 1955d6ab1dc0SHong Zhang i = merge->nrecv; 1956d6ab1dc0SHong Zhang while (i--) { 1957ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1959d6ab1dc0SHong Zhang } 19609566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19619566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 19629566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 19639566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 19659566063dSJacob Faibussowitsch PetscCall(PetscFree(sstatus)); 19669566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1967d6ab1dc0SHong Zhang 1968d6ab1dc0SHong Zhang /* compute the local portion of C (mpi mat) */ 1969d6ab1dc0SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 19709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pn + 1, &bi)); 1971d6ab1dc0SHong Zhang bi[0] = 0; 1972d6ab1dc0SHong Zhang 1973d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(P) + nnz(AP)) */ 1974f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am]))); 19759566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1976d6ab1dc0SHong Zhang current_space = free_space; 1977d6ab1dc0SHong Zhang 19789566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1979d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1980d6ab1dc0SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1981d6ab1dc0SHong Zhang nrows = *buf_ri_k[k]; 1982d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 19832d4ee042Sprj- nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure */ 1984d6ab1dc0SHong Zhang } 1985d6ab1dc0SHong Zhang 19869566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1987d0609cedSBarry Smith MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz); 1988d6ab1dc0SHong Zhang rmax = 0; 1989d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 1990d6ab1dc0SHong Zhang /* add pdt[i,:]*AP into lnk */ 1991d6ab1dc0SHong Zhang pnz = pdti[i + 1] - pdti[i]; 1992d6ab1dc0SHong Zhang ptJ = pdtj + pdti[i]; 1993d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1994d6ab1dc0SHong Zhang row = ptJ[j]; /* row of AP == col of Pt */ 1995d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1996d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1997d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 19989566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1999d6ab1dc0SHong Zhang } 2000d6ab1dc0SHong Zhang 2001d6ab1dc0SHong Zhang /* add received col data into lnk */ 2002d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 2003d6ab1dc0SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 2004d6ab1dc0SHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 2005d6ab1dc0SHong Zhang Jptr = buf_rj[k] + *nextci[k]; 20069566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk)); 20079371c9d4SSatish Balay nextrow[k]++; 20089371c9d4SSatish Balay nextci[k]++; 2009d6ab1dc0SHong Zhang } 2010d6ab1dc0SHong Zhang } 20118c78258cSHong Zhang 20128c78258cSHong Zhang /* add missing diagonal entry */ 20138c78258cSHong Zhang if (C->force_diagonals) { 20148c78258cSHong Zhang k = i + owners[rank]; /* column index */ 20159566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk)); 20168c78258cSHong Zhang } 20178c78258cSHong Zhang 2018d6ab1dc0SHong Zhang nnz = lnk[0]; 2019d6ab1dc0SHong Zhang 2020d6ab1dc0SHong Zhang /* if free space is not available, make more free space */ 2021d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 20229566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 2023d6ab1dc0SHong Zhang nspacedouble++; 2024d6ab1dc0SHong Zhang } 2025d6ab1dc0SHong Zhang /* copy data into free space, then initialize lnk */ 20269566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 20279566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz)); 20282205254eSKarl Rupp 2029d6ab1dc0SHong Zhang current_space->array += nnz; 2030d6ab1dc0SHong Zhang current_space->local_used += nnz; 2031d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 20322205254eSKarl Rupp 2033d6ab1dc0SHong Zhang bi[i + 1] = bi[i] + nnz; 2034d6ab1dc0SHong Zhang if (nnz > rmax) rmax = nnz; 2035d6ab1dc0SHong Zhang } 20369566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 2037d6ab1dc0SHong Zhang 203884648c2dSPierre Jolivet PetscCall(PetscMalloc1(bi[pn], &bj)); 20399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 2040118727c9SMark F. Adams afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1); 2041d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 20429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 2043eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 20449566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 20459566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 2046d6ab1dc0SHong Zhang 20474222ddf1SHong Zhang /* create symbolic parallel matrix C - why cannot be assembled in Numeric part */ 20489566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE)); 204958b7e2c1SStefano Zampini PetscCall(MatSetBlockSizes(C, P->cmap->bs, A->cmap->bs)); 20509566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 20519566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 20529566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 2053d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 20549566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(C, 1)); 20559566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2056d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 2057d6ab1dc0SHong Zhang row = i + rstart; 2058d6ab1dc0SHong Zhang nnz = bi[i + 1] - bi[i]; 2059d6ab1dc0SHong Zhang Jptr = bj + bi[i]; 20609566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES)); 2061d6ab1dc0SHong Zhang } 20629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20649566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2065d6ab1dc0SHong Zhang merge->bi = bi; 2066d6ab1dc0SHong Zhang merge->bj = bj; 2067d6ab1dc0SHong Zhang merge->coi = coi; 2068d6ab1dc0SHong Zhang merge->coj = coj; 2069d6ab1dc0SHong Zhang merge->buf_ri = buf_ri; 2070d6ab1dc0SHong Zhang merge->buf_rj = buf_rj; 2071d6ab1dc0SHong Zhang merge->owners_co = owners_co; 2072d6ab1dc0SHong Zhang 20734222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 20741cdffd5eSHong Zhang C->product->data = ap; 2075cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP; 20761cdffd5eSHong Zhang ap->merge = merge; 2077a560ef98SHong Zhang 20784222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ; 2079f96d37fcSHong Zhang 2080f96d37fcSHong Zhang #if defined(PETSC_USE_INFO) 2081f96d37fcSHong Zhang if (bi[pn] != 0) { 20829566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 20839566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill)); 2084f96d37fcSHong Zhang } else { 20859566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 2086f96d37fcSHong Zhang } 2087f96d37fcSHong Zhang #endif 20883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2089f96d37fcSHong Zhang } 20904222ddf1SHong Zhang 2091d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C) 2092d71ae5a4SJacob Faibussowitsch { 20934222ddf1SHong Zhang Mat_Product *product = C->product; 20944222ddf1SHong Zhang Mat A = product->A, B = product->B; 20954222ddf1SHong Zhang PetscReal fill = product->fill; 20964222ddf1SHong Zhang PetscBool flg; 20974222ddf1SHong Zhang 20984222ddf1SHong Zhang PetscFunctionBegin; 20994222ddf1SHong Zhang /* scalable */ 21009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "scalable", &flg)); 21014222ddf1SHong Zhang if (flg) { 21029566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 21034222ddf1SHong Zhang goto next; 21044222ddf1SHong Zhang } 21054222ddf1SHong Zhang 21064222ddf1SHong Zhang /* nonscalable */ 21079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg)); 21084222ddf1SHong Zhang if (flg) { 21099566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 21104222ddf1SHong Zhang goto next; 21114222ddf1SHong Zhang } 21124222ddf1SHong Zhang 21134222ddf1SHong Zhang /* matmatmult */ 21149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 21154222ddf1SHong Zhang if (flg) { 21164222ddf1SHong Zhang Mat At; 2117cc1eb50dSBarry Smith MatProductCtx_APMPI *ptap; 21184222ddf1SHong Zhang 21199566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 21209566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C)); 2121cc1eb50dSBarry Smith ptap = (MatProductCtx_APMPI *)C->product->data; 21224222ddf1SHong Zhang if (ptap) { 21234222ddf1SHong Zhang ptap->Pt = At; 2124cc1eb50dSBarry Smith C->product->destroy = MatProductCtxDestroy_MPIAIJ_PtAP; 21254222ddf1SHong Zhang } 21264222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult; 21274222ddf1SHong Zhang goto next; 21284222ddf1SHong Zhang } 21294222ddf1SHong Zhang 21304e84afc0SStefano Zampini /* backend general code */ 21319566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "backend", &flg)); 21324e84afc0SStefano Zampini if (flg) { 21339566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 21343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21354e84afc0SStefano Zampini } 21364e84afc0SStefano Zampini 21374222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported"); 21384222ddf1SHong Zhang 21394222ddf1SHong Zhang next: 21404222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 21413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21424222ddf1SHong Zhang } 21434222ddf1SHong Zhang 21444222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */ 2145d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C) 2146d71ae5a4SJacob Faibussowitsch { 21474222ddf1SHong Zhang Mat_Product *product = C->product; 21484222ddf1SHong Zhang Mat A = product->A, B = product->B; 21494222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 21504e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"}; 21514e84afc0SStefano Zampini PetscInt nalg = 5; 21524222ddf1SHong Zhang #else 21539371c9d4SSatish Balay const char *algTypes[4] = { 21549371c9d4SSatish Balay "scalable", 21559371c9d4SSatish Balay "nonscalable", 21569371c9d4SSatish Balay "seqmpi", 21579371c9d4SSatish Balay "backend", 21589371c9d4SSatish Balay }; 21594e84afc0SStefano Zampini PetscInt nalg = 4; 21604222ddf1SHong Zhang #endif 21614222ddf1SHong Zhang PetscInt alg = 1; /* set nonscalable algorithm as default */ 21624222ddf1SHong Zhang PetscBool flg; 21634222ddf1SHong Zhang MPI_Comm comm; 21644222ddf1SHong Zhang 21654222ddf1SHong Zhang PetscFunctionBegin; 21669566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21674222ddf1SHong Zhang 21684222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 21699566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 21704222ddf1SHong Zhang if (flg) { 2171835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21724222ddf1SHong Zhang 21734222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 21744222ddf1SHong Zhang if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 21754222ddf1SHong Zhang MatInfo Ainfo, Binfo; 21764222ddf1SHong Zhang PetscInt nz_local; 21774222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 21784222ddf1SHong Zhang 21799566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 21809566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 21814222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 21824222ddf1SHong Zhang 21834222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 21845440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 21854222ddf1SHong Zhang 21864222ddf1SHong Zhang if (alg_scalable) { 21874222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2188835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 21899566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 21904222ddf1SHong Zhang } 21914222ddf1SHong Zhang } 21924222ddf1SHong Zhang } 21934222ddf1SHong Zhang 21944222ddf1SHong Zhang /* Get runtime option */ 21954222ddf1SHong Zhang if (product->api_user) { 2196d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 21979566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2198d0609cedSBarry Smith PetscOptionsEnd(); 21994222ddf1SHong Zhang } else { 2200d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 22019566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2202d0609cedSBarry Smith PetscOptionsEnd(); 22034222ddf1SHong Zhang } 2204835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22054222ddf1SHong Zhang 22064222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ; 22073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22084222ddf1SHong Zhang } 22094222ddf1SHong Zhang 2210d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C) 2211d71ae5a4SJacob Faibussowitsch { 22128a9c020eSBarry Smith PetscFunctionBegin; 22138a9c020eSBarry Smith PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 22148a9c020eSBarry Smith C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ; 22153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22168a9c020eSBarry Smith } 22178a9c020eSBarry Smith 22184222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */ 2219d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C) 2220d71ae5a4SJacob Faibussowitsch { 22214222ddf1SHong Zhang Mat_Product *product = C->product; 22224222ddf1SHong Zhang Mat A = product->A, B = product->B; 22234e84afc0SStefano Zampini const char *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"}; 22244e84afc0SStefano Zampini PetscInt nalg = 4; 22254222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22264222ddf1SHong Zhang PetscBool flg; 22274222ddf1SHong Zhang MPI_Comm comm; 22284222ddf1SHong Zhang 22294222ddf1SHong Zhang PetscFunctionBegin; 22304222ddf1SHong Zhang /* Check matrix local sizes */ 22319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22329371c9d4SSatish Balay PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22339371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 22344222ddf1SHong Zhang 22354222ddf1SHong Zhang /* Set default algorithm */ 22369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2237835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22384222ddf1SHong Zhang 22394222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22404222ddf1SHong Zhang if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 22414222ddf1SHong Zhang MatInfo Ainfo, Binfo; 22424222ddf1SHong Zhang PetscInt nz_local; 22434222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22444222ddf1SHong Zhang 22459566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22469566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 22474222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 22484222ddf1SHong Zhang 22494222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22505440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 22514222ddf1SHong Zhang 22524222ddf1SHong Zhang if (alg_scalable) { 22534222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2254835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22559566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 22564222ddf1SHong Zhang } 22574222ddf1SHong Zhang } 22584222ddf1SHong Zhang 22594222ddf1SHong Zhang /* Get runtime option */ 22604222ddf1SHong Zhang if (product->api_user) { 2261d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 22629566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2263d0609cedSBarry Smith PetscOptionsEnd(); 22644222ddf1SHong Zhang } else { 2265d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 22669566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2267d0609cedSBarry Smith PetscOptionsEnd(); 22684222ddf1SHong Zhang } 2269835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 22704222ddf1SHong Zhang 22714222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ; 22723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22734222ddf1SHong Zhang } 22744222ddf1SHong Zhang 2275d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C) 2276d71ae5a4SJacob Faibussowitsch { 22774222ddf1SHong Zhang Mat_Product *product = C->product; 22784222ddf1SHong Zhang Mat A = product->A, P = product->B; 22794222ddf1SHong Zhang MPI_Comm comm; 22804222ddf1SHong Zhang PetscBool flg; 22814222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22824222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 22834e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"}; 22844222ddf1SHong Zhang PetscInt nalg = 5; 22854e84afc0SStefano Zampini #else 22864e84afc0SStefano Zampini const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"}; 22874e84afc0SStefano Zampini PetscInt nalg = 6; 22884222ddf1SHong Zhang #endif 22894222ddf1SHong Zhang PetscInt pN = P->cmap->N; 22904222ddf1SHong Zhang 22914222ddf1SHong Zhang PetscFunctionBegin; 22924222ddf1SHong Zhang /* Check matrix local sizes */ 22939566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22949371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22959371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend); 22969371c9d4SSatish Balay PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22979371c9d4SSatish Balay A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend); 22984222ddf1SHong Zhang 22994222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 23009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 23014222ddf1SHong Zhang if (flg) { 2302835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23034222ddf1SHong Zhang 23044222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 23054222ddf1SHong Zhang if (pN > 100000) { 23064222ddf1SHong Zhang MatInfo Ainfo, Pinfo; 23074222ddf1SHong Zhang PetscInt nz_local; 23084222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 23094222ddf1SHong Zhang 23109566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 23119566063dSJacob Faibussowitsch PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo)); 23124222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated); 23134222ddf1SHong Zhang 23144222ddf1SHong Zhang if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 23155440e5dcSBarry Smith PetscCallMPI(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPI_C_BOOL, MPI_LOR, comm)); 23164222ddf1SHong Zhang 23174222ddf1SHong Zhang if (alg_scalable) { 23184222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 2319835f2295SStefano Zampini PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23204222ddf1SHong Zhang } 23214222ddf1SHong Zhang } 23224222ddf1SHong Zhang } 23234222ddf1SHong Zhang 23244222ddf1SHong Zhang /* Get runtime option */ 23254222ddf1SHong Zhang if (product->api_user) { 2326d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 23279566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2328d0609cedSBarry Smith PetscOptionsEnd(); 23294222ddf1SHong Zhang } else { 2330d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 23319566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2332d0609cedSBarry Smith PetscOptionsEnd(); 23334222ddf1SHong Zhang } 2334835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23354222ddf1SHong Zhang 23364222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ; 23373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23384222ddf1SHong Zhang } 23394222ddf1SHong Zhang 2340d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C) 2341d71ae5a4SJacob Faibussowitsch { 23424222ddf1SHong Zhang Mat_Product *product = C->product; 23434222ddf1SHong Zhang Mat A = product->A, R = product->B; 23444222ddf1SHong Zhang 23454222ddf1SHong Zhang PetscFunctionBegin; 23464222ddf1SHong Zhang /* Check matrix local sizes */ 23479371c9d4SSatish Balay PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n, 23489371c9d4SSatish Balay A->rmap->n, R->rmap->n, R->cmap->n); 23494222ddf1SHong Zhang 23504222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ; 23513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23524222ddf1SHong Zhang } 23534222ddf1SHong Zhang 23544222ddf1SHong Zhang /* 23554222ddf1SHong Zhang Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm 23564222ddf1SHong Zhang */ 2357d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C) 2358d71ae5a4SJacob Faibussowitsch { 23594222ddf1SHong Zhang Mat_Product *product = C->product; 23604222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23614222ddf1SHong Zhang PetscInt alg = 1; /* default algorithm */ 23624222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "nonscalable", "seqmpi"}; 23634222ddf1SHong Zhang PetscInt nalg = 3; 23644222ddf1SHong Zhang 23654222ddf1SHong Zhang PetscFunctionBegin; 23664222ddf1SHong Zhang /* Set default algorithm */ 23679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 2368835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23694222ddf1SHong Zhang 23704222ddf1SHong Zhang /* Get runtime option */ 23714222ddf1SHong Zhang if (product->api_user) { 2372d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 23739566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2374d0609cedSBarry Smith PetscOptionsEnd(); 23754222ddf1SHong Zhang } else { 2376d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 23779566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2378d0609cedSBarry Smith PetscOptionsEnd(); 23794222ddf1SHong Zhang } 2380835f2295SStefano Zampini if (flg) PetscCall(MatProductSetAlgorithm(C, algTypes[alg])); 23814222ddf1SHong Zhang 23824222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ; 23834222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 23843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23854222ddf1SHong Zhang } 23864222ddf1SHong Zhang 2387d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C) 2388d71ae5a4SJacob Faibussowitsch { 23894222ddf1SHong Zhang Mat_Product *product = C->product; 23904222ddf1SHong Zhang 23914222ddf1SHong Zhang PetscFunctionBegin; 23924222ddf1SHong Zhang switch (product->type) { 2393d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2394d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 2395d71ae5a4SJacob Faibussowitsch break; 2396d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2397d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C)); 2398d71ae5a4SJacob Faibussowitsch break; 2399d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2400d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C)); 2401d71ae5a4SJacob Faibussowitsch break; 2402d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 2403d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C)); 2404d71ae5a4SJacob Faibussowitsch break; 2405d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt: 2406d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C)); 2407d71ae5a4SJacob Faibussowitsch break; 2408d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 2409d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C)); 2410d71ae5a4SJacob Faibussowitsch break; 2411d71ae5a4SJacob Faibussowitsch default: 2412d71ae5a4SJacob Faibussowitsch break; 24134222ddf1SHong Zhang } 24143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24154222ddf1SHong Zhang } 2416