1be1d678aSKris Buschelman 22499ec78SHong Zhang /* 32499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 42499ec78SHong Zhang C = A * B 52499ec78SHong Zhang */ 6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 9c6db04a5SJed Brown #include <petscbt.h> 10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 11af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 131634b032SHong Zhang 145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat); 165e5acdf2Sstefano_zampini #endif 175e5acdf2Sstefano_zampini 18d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C) 19d71ae5a4SJacob Faibussowitsch { 208a9c020eSBarry Smith Mat_Product *product = C->product; 218a9c020eSBarry Smith Mat B = product->B; 228a9c020eSBarry Smith 238a9c020eSBarry Smith PetscFunctionBegin; 248a9c020eSBarry Smith PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B)); 258a9c020eSBarry Smith PetscCall(MatDestroy(&B)); 268a9c020eSBarry Smith PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C)); 278a9c020eSBarry Smith PetscFunctionReturn(0); 288a9c020eSBarry Smith } 298a9c020eSBarry Smith 30d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C) 31d71ae5a4SJacob Faibussowitsch { 324222ddf1SHong Zhang Mat_Product *product = C->product; 334222ddf1SHong Zhang Mat A = product->A, B = product->B; 344222ddf1SHong Zhang MatProductAlgorithm alg = product->alg; 354222ddf1SHong Zhang PetscReal fill = product->fill; 365e68f438SHong Zhang PetscBool flg; 372499ec78SHong Zhang 382499ec78SHong Zhang PetscFunctionBegin; 394222ddf1SHong Zhang /* scalable */ 409566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 414222ddf1SHong Zhang if (flg) { 429566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 436718818eSStefano Zampini PetscFunctionReturn(0); 440fc8cf34SHong Zhang } 457d0a89b7SHong Zhang 464222ddf1SHong Zhang /* nonscalable */ 479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "nonscalable", &flg)); 484222ddf1SHong Zhang if (flg) { 499566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 506718818eSStefano Zampini PetscFunctionReturn(0); 514222ddf1SHong Zhang } 524222ddf1SHong Zhang 534222ddf1SHong Zhang /* seqmpi */ 549566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "seqmpi", &flg)); 554222ddf1SHong Zhang if (flg) { 569566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C)); 576718818eSStefano Zampini PetscFunctionReturn(0); 584222ddf1SHong Zhang } 594222ddf1SHong Zhang 604e84afc0SStefano Zampini /* backend general code */ 619566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "backend", &flg)); 624e84afc0SStefano Zampini if (flg) { 639566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 644e84afc0SStefano Zampini PetscFunctionReturn(0); 654e84afc0SStefano Zampini } 664e84afc0SStefano Zampini 674222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 689566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 694222ddf1SHong Zhang if (flg) { 709566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 714222ddf1SHong Zhang PetscFunctionReturn(0); 724222ddf1SHong Zhang } 734222ddf1SHong Zhang #endif 744222ddf1SHong Zhang SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 752499ec78SHong Zhang } 762499ec78SHong Zhang 77d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data) 78d71ae5a4SJacob Faibussowitsch { 796718818eSStefano Zampini Mat_APMPI *ptap = (Mat_APMPI *)data; 80598bc09dSHong Zhang 81598bc09dSHong Zhang PetscFunctionBegin; 829566063dSJacob Faibussowitsch PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r)); 839566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->bufa)); 849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_loc)); 859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_oth)); 869566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->Pt)); 879566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->api)); 889566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apj)); 899566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apa)); 909566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap)); 91598bc09dSHong Zhang PetscFunctionReturn(0); 92598bc09dSHong Zhang } 93598bc09dSHong Zhang 94d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C) 95d71ae5a4SJacob Faibussowitsch { 964ae0847bSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 97598bc09dSHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data; 98598bc09dSHong Zhang Mat_SeqAIJ *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data; 99c12557a1SHong Zhang PetscScalar *cda = cd->a, *coa = co->a; 100598bc09dSHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 1019ce11a7cSHong Zhang PetscScalar *apa, *ca; 102c12557a1SHong Zhang PetscInt cm = C->rmap->n; 1036718818eSStefano Zampini Mat_APMPI *ptap; 104c12557a1SHong Zhang PetscInt *api, *apj, *apJ, i, k; 10529825010SHong Zhang PetscInt cstart = C->cmap->rstart; 106598bc09dSHong Zhang PetscInt cdnz, conz, k0, k1; 107ce496241SStefano Zampini const PetscScalar *dummy; 1089467f45fSHong Zhang MPI_Comm comm; 1099467f45fSHong Zhang PetscMPIInt size; 110598bc09dSHong Zhang 111598bc09dSHong Zhang PetscFunctionBegin; 1126718818eSStefano Zampini MatCheckProduct(C, 3); 1136718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 11428b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 1159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1169566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 117aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 11880da8df7SHong Zhang 11965e4b4d4SStefano Zampini /* flag CPU mask for C */ 12065e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 12165e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 12265e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 12365e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 12465e4b4d4SStefano Zampini #endif 12565e4b4d4SStefano Zampini 126a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 127598bc09dSHong Zhang /*-----------------------------------------------------*/ 128a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */ 1299566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1309566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 131598bc09dSHong Zhang 132598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 133598bc09dSHong Zhang /*----------------------------------------------------------*/ 134598bc09dSHong Zhang /* get data from symbolic products */ 135a1a4e84aSHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 136c12557a1SHong Zhang p_oth = NULL; 137ad540459SPierre Jolivet if (size > 1) p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; 138598bc09dSHong Zhang 139598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 140598bc09dSHong Zhang apa = ptap->apa; 141598bc09dSHong Zhang 14229825010SHong Zhang api = ptap->api; 14329825010SHong Zhang apj = ptap->apj; 144ce496241SStefano Zampini /* trigger copy to CPU */ 1459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 1469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 1479566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 1489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 149598bc09dSHong Zhang for (i = 0; i < cm; i++) { 150c12557a1SHong Zhang /* compute apa = A[i,:]*P */ 151e497d3c8SHong Zhang AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa); 152598bc09dSHong Zhang 153598bc09dSHong Zhang /* set values in C */ 154598bc09dSHong Zhang apJ = apj + api[i]; 155598bc09dSHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 156598bc09dSHong Zhang conz = co->i[i + 1] - co->i[i]; 157598bc09dSHong Zhang 158910cf402Sprj- /* 1st off-diagonal part of C */ 159598bc09dSHong Zhang ca = coa + co->i[i]; 160598bc09dSHong Zhang k = 0; 161598bc09dSHong Zhang for (k0 = 0; k0 < conz; k0++) { 162598bc09dSHong Zhang if (apJ[k] >= cstart) break; 163598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1645cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 165598bc09dSHong Zhang } 166598bc09dSHong Zhang 167598bc09dSHong Zhang /* diagonal part of C */ 168598bc09dSHong Zhang ca = cda + cd->i[i]; 169598bc09dSHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 170598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 1715cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 172598bc09dSHong Zhang } 173598bc09dSHong Zhang 174910cf402Sprj- /* 2nd off-diagonal part of C */ 175598bc09dSHong Zhang ca = coa + co->i[i]; 176598bc09dSHong Zhang for (; k0 < conz; k0++) { 177598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1785cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 179598bc09dSHong Zhang } 180598bc09dSHong Zhang } 1819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 1829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 183598bc09dSHong Zhang PetscFunctionReturn(0); 184598bc09dSHong Zhang } 185598bc09dSHong Zhang 186d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C) 187d71ae5a4SJacob Faibussowitsch { 188ce94432eSBarry Smith MPI_Comm comm; 1899467f45fSHong Zhang PetscMPIInt size; 1903cdca5ebSHong Zhang Mat_APMPI *ptap; 1910298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 1926718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 193bfcd1a73SHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth; 1947dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 1954ae0847bSHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 196d14fa243SHong Zhang PetscInt *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi; 1975cab4f04SHong Zhang PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n; 198598bc09dSHong Zhang PetscBT lnkbt; 199bfcd1a73SHong Zhang PetscReal afill; 200b92f168fSBarry Smith MatType mtype; 201598bc09dSHong Zhang 202598bc09dSHong Zhang PetscFunctionBegin; 2036718818eSStefano Zampini MatCheckProduct(C, 4); 20428b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 2059566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2079467f45fSHong Zhang 2083cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 2099566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 210598bc09dSHong Zhang 211598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 2129566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 21319f0e57aSHong Zhang 214598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 2159566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 216598bc09dSHong Zhang 217a1a4e84aSHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 2189371c9d4SSatish Balay pi_loc = p_loc->i; 2199371c9d4SSatish Balay pj_loc = p_loc->j; 2209467f45fSHong Zhang if (size > 1) { 2219467f45fSHong Zhang p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; 2229371c9d4SSatish Balay pi_oth = p_oth->i; 2239371c9d4SSatish Balay pj_oth = p_oth->j; 22420e3dc75SHong Zhang } else { 22520e3dc75SHong Zhang p_oth = NULL; 2269371c9d4SSatish Balay pi_oth = NULL; 2279371c9d4SSatish Balay pj_oth = NULL; 2289467f45fSHong Zhang } 229598bc09dSHong Zhang 230598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 231598bc09dSHong Zhang /*-------------------------------------------------------------------*/ 2329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 233a1a4e84aSHong Zhang ptap->api = api; 234598bc09dSHong Zhang api[0] = 0; 235598bc09dSHong Zhang 2365cab4f04SHong Zhang /* create and initialize a linked list */ 2379566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 238598bc09dSHong Zhang 239bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 2409566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 241598bc09dSHong Zhang current_space = free_space; 242598bc09dSHong Zhang 243d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 244598bc09dSHong Zhang for (i = 0; i < am; i++) { 245598bc09dSHong Zhang /* diagonal portion of A */ 246598bc09dSHong Zhang nzi = adi[i + 1] - adi[i]; 247598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 248598bc09dSHong Zhang row = *adj++; 249598bc09dSHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 250598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 251598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 2529566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 253598bc09dSHong Zhang } 254598bc09dSHong Zhang /* off-diagonal portion of A */ 255598bc09dSHong Zhang nzi = aoi[i + 1] - aoi[i]; 256598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 257598bc09dSHong Zhang row = *aoj++; 258598bc09dSHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 259598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 2609566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 261598bc09dSHong Zhang } 2628c78258cSHong Zhang /* add possible missing diagonal entry */ 2638c78258cSHong Zhang if (C->force_diagonals) { 2648c78258cSHong Zhang j = i + rstart; /* column index */ 2659566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt)); 2668c78258cSHong Zhang } 267598bc09dSHong Zhang 268d14fa243SHong Zhang apnz = lnk[0]; 269598bc09dSHong Zhang api[i + 1] = api[i] + apnz; 270598bc09dSHong Zhang 271598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 272598bc09dSHong Zhang if (current_space->local_remaining < apnz) { 2739566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 274598bc09dSHong Zhang nspacedouble++; 275598bc09dSHong Zhang } 276598bc09dSHong Zhang 277598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 2789566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt)); 2799566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 2802205254eSKarl Rupp 281598bc09dSHong Zhang current_space->array += apnz; 282598bc09dSHong Zhang current_space->local_used += apnz; 283598bc09dSHong Zhang current_space->local_remaining -= apnz; 284598bc09dSHong Zhang } 285598bc09dSHong Zhang 286598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 287598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 2889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj)); 289a1a4e84aSHong Zhang apj = ptap->apj; 2909566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 2919566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 292598bc09dSHong Zhang 293f84c536bSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 2949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN, &ptap->apa)); 295f84c536bSHong Zhang 2964222ddf1SHong Zhang /* set and assemble symbolic parallel matrix C */ 2974222ddf1SHong Zhang /*---------------------------------------------*/ 2989566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 2999566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 300a2f3521dSMark F. Adams 3019566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 3029566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 3039566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 304d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 30517f75172Sandi selinger 3069566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 3079566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3089566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3099566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 310598bc09dSHong Zhang 3114222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 3124222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 313598bc09dSHong Zhang 3144222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 3156718818eSStefano Zampini C->product->data = ptap; 3166718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 317598bc09dSHong Zhang 318bfcd1a73SHong Zhang /* set MatInfo */ 319118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 320bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0; 3214222ddf1SHong Zhang C->info.mallocs = nspacedouble; 3224222ddf1SHong Zhang C->info.fill_ratio_given = fill; 3234222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 324bfcd1a73SHong Zhang 325bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO) 326bfcd1a73SHong Zhang if (api[am]) { 3279566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 3289566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 329bfcd1a73SHong Zhang } else { 3309566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 331bfcd1a73SHong Zhang } 332bfcd1a73SHong Zhang #endif 333598bc09dSHong Zhang PetscFunctionReturn(0); 334598bc09dSHong Zhang } 335598bc09dSHong Zhang 3364222ddf1SHong Zhang /* ------------------------------------------------------- */ 3376718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat); 3386718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat); 3396718818eSStefano Zampini 340d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C) 341d71ae5a4SJacob Faibussowitsch { 3424222ddf1SHong Zhang Mat_Product *product = C->product; 3434222ddf1SHong Zhang Mat A = product->A, B = product->B; 3449123193aSHong Zhang 3459123193aSHong Zhang PetscFunctionBegin; 3464222ddf1SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) 34798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 3484222ddf1SHong Zhang 3494222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense; 3504222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3519123193aSHong Zhang PetscFunctionReturn(0); 3529123193aSHong Zhang } 3534222ddf1SHong Zhang /* -------------------------------------------------------------------- */ 354d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C) 355d71ae5a4SJacob Faibussowitsch { 3564222ddf1SHong Zhang Mat_Product *product = C->product; 3574222ddf1SHong Zhang Mat A = product->A, B = product->B; 3584222ddf1SHong Zhang 3594222ddf1SHong Zhang PetscFunctionBegin; 3604222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 36198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 3624222ddf1SHong Zhang 3634222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense; 3644222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 3654222ddf1SHong Zhang PetscFunctionReturn(0); 3664222ddf1SHong Zhang } 3674222ddf1SHong Zhang 3684222ddf1SHong Zhang /* --------------------------------------------------------------------- */ 369d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C) 370d71ae5a4SJacob Faibussowitsch { 3714222ddf1SHong Zhang Mat_Product *product = C->product; 3724222ddf1SHong Zhang 3734222ddf1SHong Zhang PetscFunctionBegin; 3744222ddf1SHong Zhang switch (product->type) { 375d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 376d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C)); 377d71ae5a4SJacob Faibussowitsch break; 378d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 379d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C)); 380d71ae5a4SJacob Faibussowitsch break; 381d71ae5a4SJacob Faibussowitsch default: 382d71ae5a4SJacob Faibussowitsch break; 3834222ddf1SHong Zhang } 3844222ddf1SHong Zhang PetscFunctionReturn(0); 3854222ddf1SHong Zhang } 3864222ddf1SHong Zhang /* ------------------------------------------------------- */ 3879123193aSHong Zhang 3884324174eSBarry Smith typedef struct { 3895ea7661aSPierre Jolivet Mat workB, workB1; 3904324174eSBarry Smith MPI_Request *rwaits, *swaits; 39187753ddeSHong Zhang PetscInt nsends, nrecvs; 39287753ddeSHong Zhang MPI_Datatype *stype, *rtype; 3936718818eSStefano Zampini PetscInt blda; 3944324174eSBarry Smith } MPIAIJ_MPIDense; 3954324174eSBarry Smith 396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx) 397d71ae5a4SJacob Faibussowitsch { 3984324174eSBarry Smith MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx; 39987753ddeSHong Zhang PetscInt i; 4004324174eSBarry Smith 4014324174eSBarry Smith PetscFunctionBegin; 4029566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB)); 4039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB1)); 40448a46eb9SPierre Jolivet for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i])); 40548a46eb9SPierre Jolivet for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i])); 4069566063dSJacob Faibussowitsch PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits)); 4079566063dSJacob Faibussowitsch PetscCall(PetscFree(contents)); 4084324174eSBarry Smith PetscFunctionReturn(0); 4094324174eSBarry Smith } 4104324174eSBarry Smith 411d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 412d71ae5a4SJacob Faibussowitsch { 413f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 414b45e3bf4SStefano Zampini PetscInt nz = aij->B->cmap->n, nsends, nrecvs, i, nrows_to, j, blda, m, M, n, N; 4154324174eSBarry Smith MPIAIJ_MPIDense *contents; 4164324174eSBarry Smith VecScatter ctx = aij->Mvctx; 4175ea7661aSPierre Jolivet PetscInt Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, nrows_from, numBb; 41887753ddeSHong Zhang MPI_Comm comm; 41987753ddeSHong Zhang MPI_Datatype type1, *stype, *rtype; 42087753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 42187753ddeSHong Zhang PetscMPIInt *disp; 4226718818eSStefano Zampini PetscBool cisdense; 4239123193aSHong Zhang 4249123193aSHong Zhang PetscFunctionBegin; 4256718818eSStefano Zampini MatCheckProduct(C, 4); 42628b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 4279566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4289566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense)); 42948a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name)); 4309566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(C, &m, &n)); 4319566063dSJacob Faibussowitsch PetscCall(MatGetSize(C, &M, &N)); 43248a46eb9SPierre Jolivet if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN)); 4339566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 4349566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 4359566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 4369566063dSJacob Faibussowitsch PetscCall(PetscNew(&contents)); 4374324174eSBarry Smith 4389566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4399566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 44087753ddeSHong Zhang 44187753ddeSHong Zhang /* Create column block of B and C for memory scalability when BN is too large */ 44287753ddeSHong Zhang /* Estimate Bbn, column size of Bb */ 44387753ddeSHong Zhang if (nz) { 44487753ddeSHong Zhang Bbn1 = 2 * Am * BN / nz; 445da7cbbe7SHong Zhang if (!Bbn1) Bbn1 = 1; 44687753ddeSHong Zhang } else Bbn1 = BN; 44787753ddeSHong Zhang 44887753ddeSHong Zhang bs = PetscAbs(B->cmap->bs); 44987753ddeSHong Zhang Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */ 45087753ddeSHong Zhang if (Bbn1 > BN) Bbn1 = BN; 4519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm)); 45287753ddeSHong Zhang 45387753ddeSHong Zhang /* Enable runtime option for Bbn */ 454d0609cedSBarry Smith PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 4559566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL)); 456d0609cedSBarry Smith PetscOptionsEnd(); 4576718818eSStefano Zampini Bbn = PetscMin(Bbn, BN); 45887753ddeSHong Zhang 4596718818eSStefano Zampini if (Bbn > 0 && Bbn < BN) { 4605ea7661aSPierre Jolivet numBb = BN / Bbn; 4615ea7661aSPierre Jolivet Bbn1 = BN - numBb * Bbn; 4625ea7661aSPierre Jolivet } else numBb = 0; 46387753ddeSHong Zhang 4645ea7661aSPierre Jolivet if (numBb) { 4659566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb)); 4665ea7661aSPierre Jolivet if (Bbn1) { /* Create workB1 for the remaining columns */ 4679566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1)); 46887753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4699566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1)); 4705ea7661aSPierre Jolivet } else contents->workB1 = NULL; 47187753ddeSHong Zhang } 47287753ddeSHong Zhang 47387753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4749566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB)); 47587753ddeSHong Zhang 47687753ddeSHong Zhang /* Use MPI derived data type to reduce memory required by the send/recv buffers */ 4779566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits)); 47887753ddeSHong Zhang contents->stype = stype; 47987753ddeSHong Zhang contents->nsends = nsends; 48087753ddeSHong Zhang 48187753ddeSHong Zhang contents->rtype = rtype; 48287753ddeSHong Zhang contents->nrecvs = nrecvs; 4836718818eSStefano Zampini contents->blda = blda; 48487753ddeSHong Zhang 4859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bm + 1, &disp)); 48687753ddeSHong Zhang for (i = 0; i < nsends; i++) { 48787753ddeSHong Zhang nrows_to = sstarts[i + 1] - sstarts[i]; 488b45e3bf4SStefano Zampini for (j = 0; j < nrows_to; j++) disp[j] = sindices[sstarts[i] + j]; /* rowB to be sent */ 4899566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1)); 4909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i])); 4919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&stype[i])); 4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 49387753ddeSHong Zhang } 49487753ddeSHong Zhang 49587753ddeSHong Zhang for (i = 0; i < nrecvs; i++) { 49687753ddeSHong Zhang /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */ 49787753ddeSHong Zhang nrows_from = rstarts[i + 1] - rstarts[i]; 49887753ddeSHong Zhang disp[0] = 0; 4999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1)); 5009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i])); 5019566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&rtype[i])); 5029566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 50387753ddeSHong Zhang } 50487753ddeSHong Zhang 5059566063dSJacob Faibussowitsch PetscCall(PetscFree(disp)); 5069566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 5079566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 5089566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 5099566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 5109566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 5119566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 5126718818eSStefano Zampini 5136718818eSStefano Zampini C->product->data = contents; 5146718818eSStefano Zampini C->product->destroy = MatMPIAIJ_MPIDenseDestroy; 5154222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense; 5169123193aSHong Zhang PetscFunctionReturn(0); 5179123193aSHong Zhang } 5189123193aSHong Zhang 51993aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool); 5209612af27SStefano Zampini 521f32d5d43SBarry Smith /* 5222636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 5232636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 52487753ddeSHong Zhang 5259612af27SStefano Zampini Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense() 526f32d5d43SBarry Smith */ 5279612af27SStefano Zampini 528d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB) 529d71ae5a4SJacob Faibussowitsch { 530f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 5311683a169SBarry Smith const PetscScalar *b; 53287753ddeSHong Zhang PetscScalar *rvalues; 533f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 53487753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 5353515ee7fSJunchao Zhang const PetscMPIInt *sprocs, *rprocs; 5366718818eSStefano Zampini PetscInt i, nsends, nrecvs; 537f32d5d43SBarry Smith MPI_Request *swaits, *rwaits; 538ce94432eSBarry Smith MPI_Comm comm; 5396718818eSStefano Zampini PetscMPIInt tag = ((PetscObject)ctx)->tag, ncols = B->cmap->N, nrows = aij->B->cmap->n, nsends_mpi, nrecvs_mpi; 5404324174eSBarry Smith MPIAIJ_MPIDense *contents; 5414324174eSBarry Smith Mat workB; 54287753ddeSHong Zhang MPI_Datatype *stype, *rtype; 5436718818eSStefano Zampini PetscInt blda; 544f32d5d43SBarry Smith 545f32d5d43SBarry Smith PetscFunctionBegin; 5466718818eSStefano Zampini MatCheckProduct(C, 4); 54728b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5486718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 5499566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/)); 5509566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/)); 5519566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends, &nsends_mpi)); 5529566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi)); 553b45e3bf4SStefano Zampini if (Bbidx == 0) workB = *outworkB = contents->workB; 554b45e3bf4SStefano Zampini else workB = *outworkB = contents->workB1; 55508401ef6SPierre Jolivet PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows); 5563515ee7fSJunchao Zhang swaits = contents->swaits; 5573515ee7fSJunchao Zhang rwaits = contents->rwaits; 558f32d5d43SBarry Smith 5599566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 5609566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 56108401ef6SPierre Jolivet PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda); 5629566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(workB, &rvalues)); 563f32d5d43SBarry Smith 56487753ddeSHong Zhang /* Post recv, use MPI derived data type to save memory */ 5659566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 56687753ddeSHong Zhang rtype = contents->rtype; 56748a46eb9SPierre Jolivet for (i = 0; i < nrecvs; i++) PetscCallMPI(MPI_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i)); 568f32d5d43SBarry Smith 56987753ddeSHong Zhang stype = contents->stype; 57048a46eb9SPierre Jolivet for (i = 0; i < nsends; i++) PetscCallMPI(MPI_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i)); 5712636ff26SBarry Smith 5729566063dSJacob Faibussowitsch if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE)); 5739566063dSJacob Faibussowitsch if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE)); 574f32d5d43SBarry Smith 5759566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL)); 5769566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL)); 5779566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 5789566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(workB, &rvalues)); 57987753ddeSHong Zhang PetscFunctionReturn(0); 58087753ddeSHong Zhang } 581f32d5d43SBarry Smith 582d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C) 583d71ae5a4SJacob Faibussowitsch { 584f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 585f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense *)B->data; 586f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense *)C->data; 587f32d5d43SBarry Smith Mat workB; 58887753ddeSHong Zhang MPIAIJ_MPIDense *contents; 5899123193aSHong Zhang 5909123193aSHong Zhang PetscFunctionBegin; 5916718818eSStefano Zampini MatCheckProduct(C, 3); 59228b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5936718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 594f32d5d43SBarry Smith /* diagonal block of A times all local rows of B */ 5955ea7661aSPierre Jolivet /* TODO: this calls a symbolic multiplication every time, which could be avoided */ 5969566063dSJacob Faibussowitsch PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_DEFAULT, &cdense->A)); 5975ea7661aSPierre Jolivet if (contents->workB->cmap->n == B->cmap->N) { 59887753ddeSHong Zhang /* get off processor parts of B needed to complete C=A*B */ 5999566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB)); 600f32d5d43SBarry Smith 601f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 6029566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 60387753ddeSHong Zhang } else { 6045ea7661aSPierre Jolivet Mat Bb, Cb; 6055ea7661aSPierre Jolivet PetscInt BN = B->cmap->N, n = contents->workB->cmap->n, i; 606664c1e85SStefano Zampini PetscBool ccpu; 60787753ddeSHong Zhang 60808401ef6SPierre Jolivet PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n); 609664c1e85SStefano Zampini /* Prevent from unneeded copies back and forth from the GPU 610664c1e85SStefano Zampini when getting and restoring the submatrix 611664c1e85SStefano Zampini We need a proper GPU code for AIJ * dense in parallel */ 6129566063dSJacob Faibussowitsch PetscCall(MatBoundToCPU(C, &ccpu)); 6139566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, PETSC_TRUE)); 6145ea7661aSPierre Jolivet for (i = 0; i < BN; i += n) { 615a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb)); 616a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb)); 61787753ddeSHong Zhang 6185ea7661aSPierre Jolivet /* get off processor parts of B needed to complete C=A*B */ 6199566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB)); 6205ea7661aSPierre Jolivet 6215ea7661aSPierre Jolivet /* off-diagonal block of A times nonlocal rows of B */ 6225ea7661aSPierre Jolivet cdense = (Mat_MPIDense *)Cb->data; 6239566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 6249566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(B, &Bb)); 6259566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(C, &Cb)); 62687753ddeSHong Zhang } 6279566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, ccpu)); 62887753ddeSHong Zhang } 6299123193aSHong Zhang PetscFunctionReturn(0); 6309123193aSHong Zhang } 631cf1a0672SHong Zhang 632d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C) 633d71ae5a4SJacob Faibussowitsch { 634cf1a0672SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 635cf1a0672SHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data; 636cf1a0672SHong Zhang Mat_SeqAIJ *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data; 637cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj, *aoi = ao->i, *aoj; 638cf1a0672SHong Zhang PetscScalar *ada, *aoa, *cda = cd->a, *coa = co->a; 639cf1a0672SHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 640cf1a0672SHong Zhang PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj; 64129825010SHong Zhang PetscScalar *pa_loc, *pa_oth, *pa, valtmp, *ca; 64229825010SHong Zhang PetscInt cm = C->rmap->n, anz, pnz; 6436718818eSStefano Zampini Mat_APMPI *ptap; 64480da8df7SHong Zhang PetscScalar *apa_sparse; 645ce496241SStefano Zampini const PetscScalar *dummy; 646cf1a0672SHong Zhang PetscInt *api, *apj, *apJ, i, j, k, row; 64729825010SHong Zhang PetscInt cstart = C->cmap->rstart; 64829825010SHong Zhang PetscInt cdnz, conz, k0, k1, nextp; 649a7c7454dSHong Zhang MPI_Comm comm; 650a7c7454dSHong Zhang PetscMPIInt size; 6511634b032SHong Zhang 6521634b032SHong Zhang PetscFunctionBegin; 6536718818eSStefano Zampini MatCheckProduct(C, 3); 6546718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 65528b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 6569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 6579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 658aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 659a7c7454dSHong Zhang 66065e4b4d4SStefano Zampini /* flag CPU mask for C */ 66165e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 66265e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 66365e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 66465e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 66565e4b4d4SStefano Zampini #endif 66680da8df7SHong Zhang apa_sparse = ptap->apa; 66780da8df7SHong Zhang 668cf1a0672SHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 669cf1a0672SHong Zhang /*-----------------------------------------------------*/ 670cf1a0672SHong Zhang /* update numerical values of P_oth and P_loc */ 6719566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 6729566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 673cf1a0672SHong Zhang 674cf1a0672SHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 675cf1a0672SHong Zhang /*----------------------------------------------------------*/ 676cf1a0672SHong Zhang /* get data from symbolic products */ 677cf1a0672SHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 6789371c9d4SSatish Balay pi_loc = p_loc->i; 6799371c9d4SSatish Balay pj_loc = p_loc->j; 6809371c9d4SSatish Balay pa_loc = p_loc->a; 681a7c7454dSHong Zhang if (size > 1) { 682a7c7454dSHong Zhang p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; 6839371c9d4SSatish Balay pi_oth = p_oth->i; 6849371c9d4SSatish Balay pj_oth = p_oth->j; 6859371c9d4SSatish Balay pa_oth = p_oth->a; 68620e3dc75SHong Zhang } else { 6879371c9d4SSatish Balay p_oth = NULL; 6889371c9d4SSatish Balay pi_oth = NULL; 6899371c9d4SSatish Balay pj_oth = NULL; 6909371c9d4SSatish Balay pa_oth = NULL; 691a7c7454dSHong Zhang } 692cf1a0672SHong Zhang 693ce496241SStefano Zampini /* trigger copy to CPU */ 6949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 6959566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 6969566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 6979566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 69829825010SHong Zhang api = ptap->api; 69929825010SHong Zhang apj = ptap->apj; 700cf1a0672SHong Zhang for (i = 0; i < cm; i++) { 70129825010SHong Zhang apJ = apj + api[i]; 70229825010SHong Zhang 703cf1a0672SHong Zhang /* diagonal portion of A */ 704cf1a0672SHong Zhang anz = adi[i + 1] - adi[i]; 705cf1a0672SHong Zhang adj = ad->j + adi[i]; 706cf1a0672SHong Zhang ada = ad->a + adi[i]; 707cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 708cf1a0672SHong Zhang row = adj[j]; 709cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 710cf1a0672SHong Zhang pj = pj_loc + pi_loc[row]; 711cf1a0672SHong Zhang pa = pa_loc + pi_loc[row]; 71229825010SHong Zhang /* perform sparse axpy */ 713cf1a0672SHong Zhang valtmp = ada[j]; 71429825010SHong Zhang nextp = 0; 71529825010SHong Zhang for (k = 0; nextp < pnz; k++) { 71629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 71729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 71829825010SHong Zhang } 7191634b032SHong Zhang } 7209566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 721cf1a0672SHong Zhang } 7221634b032SHong Zhang 723cf1a0672SHong Zhang /* off-diagonal portion of A */ 724cf1a0672SHong Zhang anz = aoi[i + 1] - aoi[i]; 725cf1a0672SHong Zhang aoj = ao->j + aoi[i]; 726cf1a0672SHong Zhang aoa = ao->a + aoi[i]; 727cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 728cf1a0672SHong Zhang row = aoj[j]; 729cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 730cf1a0672SHong Zhang pj = pj_oth + pi_oth[row]; 731cf1a0672SHong Zhang pa = pa_oth + pi_oth[row]; 73229825010SHong Zhang /* perform sparse axpy */ 733cf1a0672SHong Zhang valtmp = aoa[j]; 73429825010SHong Zhang nextp = 0; 73529825010SHong Zhang for (k = 0; nextp < pnz; k++) { 73629825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 73729825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 73829825010SHong Zhang } 739cf1a0672SHong Zhang } 7409566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 741cf1a0672SHong Zhang } 7421634b032SHong Zhang 743cf1a0672SHong Zhang /* set values in C */ 744cf1a0672SHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 745cf1a0672SHong Zhang conz = co->i[i + 1] - co->i[i]; 7461634b032SHong Zhang 747910cf402Sprj- /* 1st off-diagonal part of C */ 748cf1a0672SHong Zhang ca = coa + co->i[i]; 749cf1a0672SHong Zhang k = 0; 750cf1a0672SHong Zhang for (k0 = 0; k0 < conz; k0++) { 751cf1a0672SHong Zhang if (apJ[k] >= cstart) break; 75229825010SHong Zhang ca[k0] = apa_sparse[k]; 75329825010SHong Zhang apa_sparse[k] = 0.0; 754cf1a0672SHong Zhang k++; 755cf1a0672SHong Zhang } 7561634b032SHong Zhang 757cf1a0672SHong Zhang /* diagonal part of C */ 758cf1a0672SHong Zhang ca = cda + cd->i[i]; 759cf1a0672SHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 76029825010SHong Zhang ca[k1] = apa_sparse[k]; 76129825010SHong Zhang apa_sparse[k] = 0.0; 762cf1a0672SHong Zhang k++; 763cf1a0672SHong Zhang } 764cf1a0672SHong Zhang 765910cf402Sprj- /* 2nd off-diagonal part of C */ 766cf1a0672SHong Zhang ca = coa + co->i[i]; 767cf1a0672SHong Zhang for (; k0 < conz; k0++) { 76829825010SHong Zhang ca[k0] = apa_sparse[k]; 76929825010SHong Zhang apa_sparse[k] = 0.0; 770cf1a0672SHong Zhang k++; 771cf1a0672SHong Zhang } 772cf1a0672SHong Zhang } 7739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 7749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 775cf1a0672SHong Zhang PetscFunctionReturn(0); 776cf1a0672SHong Zhang } 777cf1a0672SHong Zhang 7780fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */ 779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C) 780d71ae5a4SJacob Faibussowitsch { 781ce94432eSBarry Smith MPI_Comm comm; 782a7c7454dSHong Zhang PetscMPIInt size; 7833cdca5ebSHong Zhang Mat_APMPI *ptap; 7840298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 7856718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 786cf1a0672SHong Zhang Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth; 7877dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 788cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 7898c78258cSHong Zhang PetscInt i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1; 790e5ab8c0aSKarl Rupp PetscInt am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20; 791cf1a0672SHong Zhang PetscReal afill; 792b92f168fSBarry Smith MatType mtype; 793cf1a0672SHong Zhang 794cf1a0672SHong Zhang PetscFunctionBegin; 7956718818eSStefano Zampini MatCheckProduct(C, 4); 79628b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 7979566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 7989566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 799a7c7454dSHong Zhang 8003cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 8019566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 802cf1a0672SHong Zhang 803cf1a0672SHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 8049566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 80519f0e57aSHong Zhang 806cf1a0672SHong Zhang /* get P_loc by taking all local rows of P */ 8079566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 808cf1a0672SHong Zhang 809cf1a0672SHong Zhang p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 8109371c9d4SSatish Balay pi_loc = p_loc->i; 8119371c9d4SSatish Balay pj_loc = p_loc->j; 812a7c7454dSHong Zhang if (size > 1) { 813a7c7454dSHong Zhang p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data; 8149371c9d4SSatish Balay pi_oth = p_oth->i; 8159371c9d4SSatish Balay pj_oth = p_oth->j; 816968382fdSHong Zhang } else { 81720e3dc75SHong Zhang p_oth = NULL; 8189371c9d4SSatish Balay pi_oth = NULL; 8199371c9d4SSatish Balay pj_oth = NULL; 820a7c7454dSHong Zhang } 821cf1a0672SHong Zhang 822cf1a0672SHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 823cf1a0672SHong Zhang /*-------------------------------------------------------------------*/ 8249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 825cf1a0672SHong Zhang ptap->api = api; 826cf1a0672SHong Zhang api[0] = 0; 827cf1a0672SHong Zhang 8289566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk)); 829cf1a0672SHong Zhang 830cf1a0672SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 8319566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 832cf1a0672SHong Zhang current_space = free_space; 833d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 834cf1a0672SHong Zhang for (i = 0; i < am; i++) { 835cf1a0672SHong Zhang /* diagonal portion of A */ 836cf1a0672SHong Zhang nzi = adi[i + 1] - adi[i]; 837cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 838cf1a0672SHong Zhang row = *adj++; 839cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 840cf1a0672SHong Zhang Jptr = pj_loc + pi_loc[row]; 8418a210135Sandi selinger /* Expand list if it is not long enough */ 8428328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8438328dd82Sandi selinger lsize = pnz + apnz_max; 8449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8458a210135Sandi selinger } 846cf1a0672SHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 8479566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8488a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8498a210135Sandi selinger api[i + 1] = api[i] + apnz; 8508c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 851cf1a0672SHong Zhang } 852cf1a0672SHong Zhang /* off-diagonal portion of A */ 853cf1a0672SHong Zhang nzi = aoi[i + 1] - aoi[i]; 854cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 855cf1a0672SHong Zhang row = *aoj++; 856cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 857cf1a0672SHong Zhang Jptr = pj_oth + pi_oth[row]; 8588a210135Sandi selinger /* Expand list if it is not long enough */ 8598328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8608328dd82Sandi selinger lsize = pnz + apnz_max; 8619566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8628a210135Sandi selinger } 8638a210135Sandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 8649566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8658a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8668a210135Sandi selinger api[i + 1] = api[i] + apnz; 8678c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 868cf1a0672SHong Zhang } 8698c78258cSHong Zhang 8708c78258cSHong Zhang /* add missing diagonal entry */ 8718c78258cSHong Zhang if (C->force_diagonals) { 8728c78258cSHong Zhang j = i + rstart; /* column index */ 8739566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk)); 8748c78258cSHong Zhang } 8758c78258cSHong Zhang 876f84c536bSHong Zhang apnz = *lnk; 877cf1a0672SHong Zhang api[i + 1] = api[i] + apnz; 8788a210135Sandi selinger if (apnz > apnz_max) apnz_max = apnz; 879cf1a0672SHong Zhang 880cf1a0672SHong Zhang /* if free space is not available, double the total space in the list */ 881cf1a0672SHong Zhang if (current_space->local_remaining < apnz) { 8829566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 883cf1a0672SHong Zhang nspacedouble++; 884cf1a0672SHong Zhang } 885cf1a0672SHong Zhang 886cf1a0672SHong Zhang /* Copy data into free space, then initialize lnk */ 8879566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk)); 8889566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 8892205254eSKarl Rupp 890cf1a0672SHong Zhang current_space->array += apnz; 891cf1a0672SHong Zhang current_space->local_used += apnz; 892cf1a0672SHong Zhang current_space->local_remaining -= apnz; 893cf1a0672SHong Zhang } 894cf1a0672SHong Zhang 895cf1a0672SHong Zhang /* Allocate space for apj, initialize apj, and */ 896cf1a0672SHong Zhang /* destroy list of free space and other temporary array(s) */ 8979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj)); 898cf1a0672SHong Zhang apj = ptap->apj; 8999566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 9009566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 901cf1a0672SHong Zhang 9024222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 903cf1a0672SHong Zhang /*----------------------------------------------------*/ 9049566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 9059566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 9069566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 9079566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 9089566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 909d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 910cf1a0672SHong Zhang 9114222ddf1SHong Zhang /* malloc apa for assembly C */ 9129566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(apnz_max, &ptap->apa)); 91317f75172Sandi selinger 9149566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 9159566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 9169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 9179566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 918cf1a0672SHong Zhang 9194222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 9204222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 921cf1a0672SHong Zhang 9224222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 9236718818eSStefano Zampini C->product->data = ptap; 9246718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 925cf1a0672SHong Zhang 926cf1a0672SHong Zhang /* set MatInfo */ 927118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 928cf1a0672SHong Zhang if (afill < 1.0) afill = 1.0; 9294222ddf1SHong Zhang C->info.mallocs = nspacedouble; 9304222ddf1SHong Zhang C->info.fill_ratio_given = fill; 9314222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 932cf1a0672SHong Zhang 933cf1a0672SHong Zhang #if defined(PETSC_USE_INFO) 934cf1a0672SHong Zhang if (api[am]) { 9359566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 9369566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 937cf1a0672SHong Zhang } else { 9389566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 939cf1a0672SHong Zhang } 940cf1a0672SHong Zhang #endif 9411634b032SHong Zhang PetscFunctionReturn(0); 9421634b032SHong Zhang } 943f96d37fcSHong Zhang 944a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication. */ 945a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the */ 946a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once. */ 947d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out) 948d71ae5a4SJacob Faibussowitsch { 949a9d7e0ccSandi selinger int i = 0, j = 0, k = 0, l = 0; 950a9d7e0ccSandi selinger 951a9d7e0ccSandi selinger /* Traverse all three arrays */ 952a9d7e0ccSandi selinger while (i < size1 && j < size2 && k < size3) { 953a9d7e0ccSandi selinger if (in1[i] < in2[j] && in1[i] < in3[k]) { 954a9d7e0ccSandi selinger out[l++] = in1[i++]; 9559371c9d4SSatish Balay } else if (in2[j] < in1[i] && in2[j] < in3[k]) { 956a9d7e0ccSandi selinger out[l++] = in2[j++]; 9579371c9d4SSatish Balay } else if (in3[k] < in1[i] && in3[k] < in2[j]) { 958a9d7e0ccSandi selinger out[l++] = in3[k++]; 9599371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] < in3[k]) { 960a9d7e0ccSandi selinger out[l++] = in1[i]; 961a9d7e0ccSandi selinger i++, j++; 9629371c9d4SSatish Balay } else if (in1[i] == in3[k] && in1[i] < in2[j]) { 963a9d7e0ccSandi selinger out[l++] = in1[i]; 964a9d7e0ccSandi selinger i++, k++; 9659371c9d4SSatish Balay } else if (in3[k] == in2[j] && in2[j] < in1[i]) { 966a9d7e0ccSandi selinger out[l++] = in2[j]; 967a9d7e0ccSandi selinger k++, j++; 9689371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] == in3[k]) { 969a9d7e0ccSandi selinger out[l++] = in1[i]; 970a9d7e0ccSandi selinger i++, j++, k++; 971a9d7e0ccSandi selinger } 972a9d7e0ccSandi selinger } 973a9d7e0ccSandi selinger 974a9d7e0ccSandi selinger /* Traverse two remaining arrays */ 975a9d7e0ccSandi selinger while (i < size1 && j < size2) { 976a9d7e0ccSandi selinger if (in1[i] < in2[j]) { 977a9d7e0ccSandi selinger out[l++] = in1[i++]; 9789371c9d4SSatish Balay } else if (in1[i] > in2[j]) { 979a9d7e0ccSandi selinger out[l++] = in2[j++]; 9809371c9d4SSatish Balay } else { 981a9d7e0ccSandi selinger out[l++] = in1[i]; 982a9d7e0ccSandi selinger i++, j++; 983a9d7e0ccSandi selinger } 984a9d7e0ccSandi selinger } 985a9d7e0ccSandi selinger 986a9d7e0ccSandi selinger while (i < size1 && k < size3) { 987a9d7e0ccSandi selinger if (in1[i] < in3[k]) { 988a9d7e0ccSandi selinger out[l++] = in1[i++]; 9899371c9d4SSatish Balay } else if (in1[i] > in3[k]) { 990a9d7e0ccSandi selinger out[l++] = in3[k++]; 9919371c9d4SSatish Balay } else { 992a9d7e0ccSandi selinger out[l++] = in1[i]; 993a9d7e0ccSandi selinger i++, k++; 994a9d7e0ccSandi selinger } 995a9d7e0ccSandi selinger } 996a9d7e0ccSandi selinger 997a9d7e0ccSandi selinger while (k < size3 && j < size2) { 998a9d7e0ccSandi selinger if (in3[k] < in2[j]) { 999a9d7e0ccSandi selinger out[l++] = in3[k++]; 10009371c9d4SSatish Balay } else if (in3[k] > in2[j]) { 1001a9d7e0ccSandi selinger out[l++] = in2[j++]; 10029371c9d4SSatish Balay } else { 1003a9d7e0ccSandi selinger out[l++] = in3[k]; 1004a9d7e0ccSandi selinger k++, j++; 1005a9d7e0ccSandi selinger } 1006a9d7e0ccSandi selinger } 1007a9d7e0ccSandi selinger 1008a9d7e0ccSandi selinger /* Traverse one remaining array */ 1009a9d7e0ccSandi selinger while (i < size1) out[l++] = in1[i++]; 1010a9d7e0ccSandi selinger while (j < size2) out[l++] = in2[j++]; 1011a9d7e0ccSandi selinger while (k < size3) out[l++] = in3[k++]; 1012a9d7e0ccSandi selinger 1013a9d7e0ccSandi selinger *size4 = l; 1014a9d7e0ccSandi selinger } 1015a9d7e0ccSandi selinger 101673b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and */ 101773b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential) */ 101873b67375Sandi selinger /* matrix-matrix multiplications. */ 1019d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C) 1020d71ae5a4SJacob Faibussowitsch { 1021a9d7e0ccSandi selinger MPI_Comm comm; 1022a9d7e0ccSandi selinger PetscMPIInt size; 10233cdca5ebSHong Zhang Mat_APMPI *ptap; 1024a9d7e0ccSandi selinger PetscFreeSpaceList free_space_diag = NULL, current_space = NULL; 1025a9d7e0ccSandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1026a9d7e0ccSandi selinger Mat_SeqAIJ *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc; 1027a9d7e0ccSandi selinger Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1028a9d7e0ccSandi selinger Mat_SeqAIJ *adpd_seq, *p_off, *aopoth_seq; 1029a9d7e0ccSandi selinger PetscInt adponz, adpdnz; 10307dbaa2c6Sandi selinger PetscInt *pi_loc, *dnz, *onz; 1031a9d7e0ccSandi selinger PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart; 10329371c9d4SSatish Balay PetscInt *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj; 1033a016958eSandi selinger PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend; 1034a9d7e0ccSandi selinger PetscBT lnkbt; 1035a9d7e0ccSandi selinger PetscReal afill; 1036a9d7e0ccSandi selinger PetscMPIInt rank; 1037a9d7e0ccSandi selinger Mat adpd, aopoth; 1038b92f168fSBarry Smith MatType mtype; 1039e83e5f86SFande Kong const char *prefix; 1040a9d7e0ccSandi selinger 1041a9d7e0ccSandi selinger PetscFunctionBegin; 10426718818eSStefano Zampini MatCheckProduct(C, 4); 104328b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 10449566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 10459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10479566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend)); 1048a9d7e0ccSandi selinger 10493cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 10509566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1051a9d7e0ccSandi selinger 1052a9d7e0ccSandi selinger /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 10539566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1054a9d7e0ccSandi selinger 1055a9d7e0ccSandi selinger /* get P_loc by taking all local rows of P */ 10569566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 1057a9d7e0ccSandi selinger 1058a9d7e0ccSandi selinger p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data; 1059a9d7e0ccSandi selinger pi_loc = p_loc->i; 1060a9d7e0ccSandi selinger 1061a9d7e0ccSandi selinger /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */ 10629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 10639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &adpoi)); 1064a9d7e0ccSandi selinger 1065a9d7e0ccSandi selinger adpoi[0] = 0; 1066a9d7e0ccSandi selinger ptap->api = api; 1067a9d7e0ccSandi selinger api[0] = 0; 1068a9d7e0ccSandi selinger 1069a9d7e0ccSandi selinger /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */ 10709566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 1071d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 1072a9d7e0ccSandi selinger 1073a9d7e0ccSandi selinger /* Symbolic calc of A_loc_diag * P_loc_diag */ 10749566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10759566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd)); 10769566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10779566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(adpd, prefix)); 10789566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_")); 10794222ddf1SHong Zhang 10809566063dSJacob Faibussowitsch PetscCall(MatProductSetType(adpd, MATPRODUCT_AB)); 10819566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(adpd, "sorted")); 10829566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(adpd, fill)); 10839566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(adpd)); 10848c78258cSHong Zhang 10858c78258cSHong Zhang adpd->force_diagonals = C->force_diagonals; 10869566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic(adpd)); 10874222ddf1SHong Zhang 1088a9d7e0ccSandi selinger adpd_seq = (Mat_SeqAIJ *)((adpd)->data); 10899371c9d4SSatish Balay adpdi = adpd_seq->i; 10909371c9d4SSatish Balay adpdj = adpd_seq->j; 1091a9d7e0ccSandi selinger p_off = (Mat_SeqAIJ *)((p->B)->data); 10929371c9d4SSatish Balay poff_i = p_off->i; 10939371c9d4SSatish Balay poff_j = p_off->j; 1094a9d7e0ccSandi selinger 109573b67375Sandi selinger /* j_temp stores indices of a result row before they are added to the linked list */ 10969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pN + 2, &j_temp)); 1097a9d7e0ccSandi selinger 1098a9d7e0ccSandi selinger /* Symbolic calc of the A_diag * p_loc_off */ 1099a9d7e0ccSandi selinger /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 11009566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag)); 1101a9d7e0ccSandi selinger current_space = free_space_diag; 1102a9d7e0ccSandi selinger 1103a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1104a9d7e0ccSandi selinger /* A_diag * P_loc_off */ 1105a9d7e0ccSandi selinger nzi = adi[i + 1] - adi[i]; 1106a9d7e0ccSandi selinger for (j = 0; j < nzi; j++) { 1107a9d7e0ccSandi selinger row = *adj++; 1108a9d7e0ccSandi selinger pnz = poff_i[row + 1] - poff_i[row]; 1109a9d7e0ccSandi selinger Jptr = poff_j + poff_i[row]; 1110ad540459SPierre Jolivet for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]]; 1111a9d7e0ccSandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 11129566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt)); 1113a9d7e0ccSandi selinger } 1114a9d7e0ccSandi selinger 1115a9d7e0ccSandi selinger adponz = lnk[0]; 1116a9d7e0ccSandi selinger adpoi[i + 1] = adpoi[i] + adponz; 1117a9d7e0ccSandi selinger 1118a9d7e0ccSandi selinger /* if free space is not available, double the total space in the list */ 1119a9d7e0ccSandi selinger if (current_space->local_remaining < adponz) { 11209566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), ¤t_space)); 1121a9d7e0ccSandi selinger nspacedouble++; 1122a9d7e0ccSandi selinger } 1123a9d7e0ccSandi selinger 1124a9d7e0ccSandi selinger /* Copy data into free space, then initialize lnk */ 11259566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt)); 1126a9d7e0ccSandi selinger 1127a9d7e0ccSandi selinger current_space->array += adponz; 1128a9d7e0ccSandi selinger current_space->local_used += adponz; 1129a9d7e0ccSandi selinger current_space->local_remaining -= adponz; 1130a9d7e0ccSandi selinger } 1131a9d7e0ccSandi selinger 1132a9d7e0ccSandi selinger /* Symbolic calc of A_off * P_oth */ 11339566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(a->B, prefix)); 11349566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_")); 11359566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth)); 11369566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth)); 1137a9d7e0ccSandi selinger aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data); 11389371c9d4SSatish Balay aopothi = aopoth_seq->i; 11399371c9d4SSatish Balay aopothj = aopoth_seq->j; 1140a9d7e0ccSandi selinger 1141a9d7e0ccSandi selinger /* Allocate space for apj, adpj, aopj, ... */ 1142a9d7e0ccSandi selinger /* destroy lists of free space and other temporary array(s) */ 1143a9d7e0ccSandi selinger 11449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am] + 2, &ptap->apj)); 11459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(adpoi[am] + 2, &adpoj)); 1146a9d7e0ccSandi selinger 1147a9d7e0ccSandi selinger /* Copy from linked list to j-array */ 11489566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj)); 11499566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 1150a9d7e0ccSandi selinger 1151a9d7e0ccSandi selinger adpoJ = adpoj; 1152a9d7e0ccSandi selinger adpdJ = adpdj; 1153a9d7e0ccSandi selinger aopJ = aopothj; 1154a9d7e0ccSandi selinger apj = ptap->apj; 1155a9d7e0ccSandi selinger apJ = apj; /* still empty */ 1156a9d7e0ccSandi selinger 1157a9d7e0ccSandi selinger /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */ 1158a9d7e0ccSandi selinger /* A_diag * P_loc_diag to get A*P */ 1159a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1160a9d7e0ccSandi selinger aopnz = aopothi[i + 1] - aopothi[i]; 1161a9d7e0ccSandi selinger adponz = adpoi[i + 1] - adpoi[i]; 1162a9d7e0ccSandi selinger adpdnz = adpdi[i + 1] - adpdi[i]; 1163a9d7e0ccSandi selinger 1164a9d7e0ccSandi selinger /* Correct indices from A_diag*P_diag */ 1165ad540459SPierre Jolivet for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart; 1166a9d7e0ccSandi selinger /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */ 1167a9d7e0ccSandi selinger Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ); 11689566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz)); 1169a9d7e0ccSandi selinger 1170a9d7e0ccSandi selinger aopJ += aopnz; 1171a9d7e0ccSandi selinger adpoJ += adponz; 1172a9d7e0ccSandi selinger adpdJ += adpdnz; 1173a9d7e0ccSandi selinger apJ += apnz; 1174a9d7e0ccSandi selinger api[i + 1] = api[i] + apnz; 1175a9d7e0ccSandi selinger } 1176a9d7e0ccSandi selinger 1177a9d7e0ccSandi selinger /* malloc apa to store dense row A[i,:]*P */ 11789566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN + 2, &ptap->apa)); 1179a9d7e0ccSandi selinger 11804222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 11819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 11829566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 11839566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 11849566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 11859566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1186d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 118717f75172Sandi selinger 11889566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 11899566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 11909566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 11919566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 119217f75172Sandi selinger 11934222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 11944222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1195a9d7e0ccSandi selinger 11964222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 11976718818eSStefano Zampini C->product->data = ptap; 11986718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 1199a9d7e0ccSandi selinger 1200a9d7e0ccSandi selinger /* set MatInfo */ 120173b67375Sandi selinger afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 120273b67375Sandi selinger if (afill < 1.0) afill = 1.0; 12034222ddf1SHong Zhang C->info.mallocs = nspacedouble; 12044222ddf1SHong Zhang C->info.fill_ratio_given = fill; 12054222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1206a9d7e0ccSandi selinger 1207a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO) 1208a9d7e0ccSandi selinger if (api[am]) { 12099566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 12109566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1211a9d7e0ccSandi selinger } else { 12129566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1213a9d7e0ccSandi selinger } 1214a9d7e0ccSandi selinger #endif 1215a9d7e0ccSandi selinger 12169566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aopoth)); 12179566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adpd)); 12189566063dSJacob Faibussowitsch PetscCall(PetscFree(j_temp)); 12199566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoj)); 12209566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoi)); 1221a9d7e0ccSandi selinger PetscFunctionReturn(0); 1222a9d7e0ccSandi selinger } 1223a9d7e0ccSandi selinger 1224f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/ 1225c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */ 1226d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C) 1227d71ae5a4SJacob Faibussowitsch { 12286718818eSStefano Zampini Mat_APMPI *ptap; 122960552ceaSHong Zhang Mat Pt; 1230c216dbf3SHong Zhang 1231c216dbf3SHong Zhang PetscFunctionBegin; 12326718818eSStefano Zampini MatCheckProduct(C, 3); 12336718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 123428b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 123528b400f6SJacob Faibussowitsch PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 123660552ceaSHong Zhang 123760552ceaSHong Zhang Pt = ptap->Pt; 12381cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(P, Pt)); 12399566063dSJacob Faibussowitsch PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt)); 12409566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C)); 1241f96d37fcSHong Zhang PetscFunctionReturn(0); 1242f96d37fcSHong Zhang } 1243f96d37fcSHong Zhang 1244c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */ 1245d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C) 1246d71ae5a4SJacob Faibussowitsch { 12473cdca5ebSHong Zhang Mat_APMPI *ptap; 12486718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1249912837bbSHong Zhang MPI_Comm comm; 1250912837bbSHong Zhang PetscMPIInt size, rank; 1251912837bbSHong Zhang PetscFreeSpaceList free_space = NULL, current_space = NULL; 12524ede91e3SHong Zhang PetscInt pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n; 125369be949aSStefano Zampini PetscInt *lnk, i, k, nsend, rstart; 1254912837bbSHong Zhang PetscBT lnkbt; 1255ec4bef21SJose E. Roman PetscMPIInt tagi, tagj, *len_si, *len_s, *len_ri, nrecv; 1256ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted = 0; 12578c78258cSHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols; 12587f3e1f30SHong Zhang PetscInt len, proc, *dnz, *onz, *owners, nzi; 1259912837bbSHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1260912837bbSHong Zhang MPI_Request *swaits, *rwaits; 1261912837bbSHong Zhang MPI_Status *sstatus, rstatus; 1262912837bbSHong Zhang PetscLayout rowmap; 1263912837bbSHong Zhang PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */ 1264912837bbSHong Zhang PetscMPIInt *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */ 12657f3e1f30SHong Zhang PetscInt *Jptr, *prmap = p->garray, con, j, Crmax; 12664ede91e3SHong Zhang Mat_SeqAIJ *a_loc, *c_loc, *c_oth; 1267*eec179cfSJacob Faibussowitsch PetscHMapI ta; 1268b92f168fSBarry Smith MatType mtype; 1269e83e5f86SFande Kong const char *prefix; 1270912837bbSHong Zhang 1271912837bbSHong Zhang PetscFunctionBegin; 12729566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 12739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 12749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1275912837bbSHong Zhang 12764222ddf1SHong Zhang /* create symbolic parallel matrix C */ 12779566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 12789566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 1279912837bbSHong Zhang 12804222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 1281912837bbSHong Zhang 12823cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 12839566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1284912837bbSHong Zhang 1285912837bbSHong Zhang /* (0) compute Rd = Pd^T, Ro = Po^T */ 1286912837bbSHong Zhang /* --------------------------------- */ 1287acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd)); 1288acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro)); 1289912837bbSHong Zhang 1290669e9c86SHong Zhang /* (1) compute symbolic A_loc */ 1291669e9c86SHong Zhang /* ---------------------------*/ 12929566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc)); 1293912837bbSHong Zhang 12944ede91e3SHong Zhang /* (2-1) compute symbolic C_oth = Ro*A_loc */ 1295912837bbSHong Zhang /* ------------------------------------ */ 12969566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 12979566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix)); 12989566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_")); 12999566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth)); 13009566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth)); 1301912837bbSHong Zhang 1302912837bbSHong Zhang /* (3) send coj of C_oth to other processors */ 1303912837bbSHong Zhang /* ------------------------------------------ */ 1304912837bbSHong Zhang /* determine row ownership */ 13059566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &rowmap)); 1306912837bbSHong Zhang rowmap->n = pn; 1307912837bbSHong Zhang rowmap->bs = 1; 13089566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rowmap)); 1309912837bbSHong Zhang owners = rowmap->range; 1310912837bbSHong Zhang 1311912837bbSHong Zhang /* determine the number of messages to send, their lengths */ 13129566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 2, &owners_co)); 13139566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_s, size)); 13149566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_si, size)); 1315912837bbSHong Zhang 1316912837bbSHong Zhang c_oth = (Mat_SeqAIJ *)ptap->C_oth->data; 13179371c9d4SSatish Balay coi = c_oth->i; 13189371c9d4SSatish Balay coj = c_oth->j; 1319912837bbSHong Zhang con = ptap->C_oth->rmap->n; 1320912837bbSHong Zhang proc = 0; 1321912837bbSHong Zhang for (i = 0; i < con; i++) { 1322912837bbSHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 13237f3e1f30SHong Zhang len_si[proc]++; /* num of rows in Co(=Pt*A) to be sent to [proc] */ 1324912837bbSHong Zhang len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */ 1325912837bbSHong Zhang } 1326912837bbSHong Zhang 1327912837bbSHong Zhang len = 0; /* max length of buf_si[], see (4) */ 1328912837bbSHong Zhang owners_co[0] = 0; 1329912837bbSHong Zhang nsend = 0; 1330912837bbSHong Zhang for (proc = 0; proc < size; proc++) { 1331912837bbSHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1332912837bbSHong Zhang if (len_s[proc]) { 1333912837bbSHong Zhang nsend++; 1334912837bbSHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */ 1335912837bbSHong Zhang len += len_si[proc]; 1336912837bbSHong Zhang } 1337912837bbSHong Zhang } 1338912837bbSHong Zhang 1339912837bbSHong Zhang /* determine the number and length of messages to receive for coi and coj */ 13409566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv)); 13419566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri)); 1342912837bbSHong Zhang 1343912837bbSHong Zhang /* post the Irecv and Isend of coj */ 13449566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 13459566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits)); 13469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend + 1, &swaits)); 1347912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1348912837bbSHong Zhang if (!len_s[proc]) continue; 1349912837bbSHong Zhang i = owners_co[proc]; 13509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1351912837bbSHong Zhang k++; 1352912837bbSHong Zhang } 1353912837bbSHong Zhang 13547f3e1f30SHong Zhang /* (2-2) compute symbolic C_loc = Rd*A_loc */ 1355912837bbSHong Zhang /* ---------------------------------------- */ 13569566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix)); 13579566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_")); 13589566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc)); 13599566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc)); 1360912837bbSHong Zhang c_loc = (Mat_SeqAIJ *)ptap->C_loc->data; 1361912837bbSHong Zhang 1362912837bbSHong Zhang /* receives coj are complete */ 136348a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13649566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13659566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1366912837bbSHong Zhang 1367912837bbSHong Zhang /* add received column indices into ta to update Crmax */ 13684ede91e3SHong Zhang a_loc = (Mat_SeqAIJ *)(ptap->A_loc)->data; 1369669e9c86SHong Zhang 1370669e9c86SHong Zhang /* create and initialize a linked list */ 1371*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */ 13724ede91e3SHong Zhang MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta); 1373669e9c86SHong Zhang 1374912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1375912837bbSHong Zhang Jptr = buf_rj[k]; 1376*eec179cfSJacob Faibussowitsch for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISetWithMode(ta, *(Jptr + j) + 1, 1, INSERT_VALUES)); 1377912837bbSHong Zhang } 1378*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 1379*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 1380912837bbSHong Zhang 1381912837bbSHong Zhang /* (4) send and recv coi */ 1382912837bbSHong Zhang /*-----------------------*/ 13839566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 13849566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits)); 13859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 1386912837bbSHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1387912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1388912837bbSHong Zhang if (!len_s[proc]) continue; 1389912837bbSHong Zhang /* form outgoing message for i-structure: 1390912837bbSHong Zhang buf_si[0]: nrows to be sent 1391912837bbSHong Zhang [1:nrows]: row index (global) 1392912837bbSHong Zhang [nrows+1:2*nrows+1]: i-structure index 1393912837bbSHong Zhang */ 1394912837bbSHong Zhang /*-------------------------------------------*/ 1395912837bbSHong Zhang nrows = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */ 1396912837bbSHong Zhang buf_si_i = buf_si + nrows + 1; 1397912837bbSHong Zhang buf_si[0] = nrows; 1398912837bbSHong Zhang buf_si_i[0] = 0; 1399912837bbSHong Zhang nrows = 0; 1400912837bbSHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1401912837bbSHong Zhang nzi = coi[i + 1] - coi[i]; 1402912837bbSHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1403912837bbSHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1404912837bbSHong Zhang nrows++; 1405912837bbSHong Zhang } 14069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1407912837bbSHong Zhang k++; 1408912837bbSHong Zhang buf_si += len_si[proc]; 1409912837bbSHong Zhang } 141048a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 14119566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 14129566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1413912837bbSHong Zhang 14149566063dSJacob Faibussowitsch PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co)); 14159566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 14169566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 14179566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1418912837bbSHong Zhang 14194222ddf1SHong Zhang /* (5) compute the local portion of C */ 1420912837bbSHong Zhang /* ------------------------------------------ */ 14214222ddf1SHong Zhang /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */ 14229566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(Crmax, &free_space)); 1423912837bbSHong Zhang current_space = free_space; 1424912837bbSHong Zhang 14259566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci)); 1426912837bbSHong Zhang for (k = 0; k < nrecv; k++) { 1427912837bbSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1428912837bbSHong Zhang nrows = *buf_ri_k[k]; 1429912837bbSHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1430a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1431912837bbSHong Zhang } 1432912837bbSHong Zhang 1433d0609cedSBarry Smith MatPreallocateBegin(comm, pn, an, dnz, onz); 14349566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt)); 14358c78258cSHong Zhang for (i = 0; i < pn; i++) { /* for each local row of C */ 14364222ddf1SHong Zhang /* add C_loc into C */ 1437912837bbSHong Zhang nzi = c_loc->i[i + 1] - c_loc->i[i]; 1438912837bbSHong Zhang Jptr = c_loc->j + c_loc->i[i]; 14399566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 1440912837bbSHong Zhang 1441912837bbSHong Zhang /* add received col data into lnk */ 1442912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1443912837bbSHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1444912837bbSHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1445912837bbSHong Zhang Jptr = buf_rj[k] + *nextci[k]; 14469566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 14479371c9d4SSatish Balay nextrow[k]++; 14489371c9d4SSatish Balay nextci[k]++; 1449912837bbSHong Zhang } 1450912837bbSHong Zhang } 14518c78258cSHong Zhang 14528c78258cSHong Zhang /* add missing diagonal entry */ 14538c78258cSHong Zhang if (C->force_diagonals) { 14548c78258cSHong Zhang k = i + owners[rank]; /* column index */ 14559566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt)); 14568c78258cSHong Zhang } 14578c78258cSHong Zhang 1458912837bbSHong Zhang nzi = lnk[0]; 1459912837bbSHong Zhang 1460912837bbSHong Zhang /* copy data into free space, then initialize lnk */ 14619566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt)); 14629566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz)); 1463912837bbSHong Zhang } 14649566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 14659566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 14669566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceDestroy(free_space)); 1467912837bbSHong Zhang 1468912837bbSHong Zhang /* local sizes and preallocation */ 14699566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE)); 14709566063dSJacob Faibussowitsch if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs)); 14719566063dSJacob Faibussowitsch if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs)); 14729566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1473d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 1474912837bbSHong Zhang 147569be949aSStefano Zampini /* add C_loc and C_oth to C */ 14769566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, NULL)); 147769be949aSStefano Zampini for (i = 0; i < pn; i++) { 14788c78258cSHong Zhang ncols = c_loc->i[i + 1] - c_loc->i[i]; 14798c78258cSHong Zhang cols = c_loc->j + c_loc->i[i]; 14808c78258cSHong Zhang row = rstart + i; 14819566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 14828c78258cSHong Zhang 148348a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES)); 148469be949aSStefano Zampini } 148569be949aSStefano Zampini for (i = 0; i < con; i++) { 14868c78258cSHong Zhang ncols = c_oth->i[i + 1] - c_oth->i[i]; 14878c78258cSHong Zhang cols = c_oth->j + c_oth->i[i]; 14888c78258cSHong Zhang row = prmap[i]; 14899566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 149069be949aSStefano Zampini } 14919566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 14929566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 14939566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 149469be949aSStefano Zampini 1495912837bbSHong Zhang /* members in merge */ 14969566063dSJacob Faibussowitsch PetscCall(PetscFree(id_r)); 14979566063dSJacob Faibussowitsch PetscCall(PetscFree(len_r)); 14989566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri[0])); 14999566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri)); 15009566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj[0])); 15019566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj)); 15029566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rowmap)); 1503912837bbSHong Zhang 15044222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 15056718818eSStefano Zampini C->product->data = ptap; 15066718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 1507912837bbSHong Zhang PetscFunctionReturn(0); 1508912837bbSHong Zhang } 1509912837bbSHong Zhang 1510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C) 1511d71ae5a4SJacob Faibussowitsch { 15126718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1513669e9c86SHong Zhang Mat_SeqAIJ *c_seq; 15146718818eSStefano Zampini Mat_APMPI *ptap; 1515669e9c86SHong Zhang Mat A_loc, C_loc, C_oth; 1516912837bbSHong Zhang PetscInt i, rstart, rend, cm, ncols, row; 1517912837bbSHong Zhang const PetscInt *cols; 1518912837bbSHong Zhang const PetscScalar *vals; 1519912837bbSHong Zhang 1520912837bbSHong Zhang PetscFunctionBegin; 15216718818eSStefano Zampini MatCheckProduct(C, 3); 15226718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 152328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 152428b400f6SJacob Faibussowitsch PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15259566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(C)); 1526912837bbSHong Zhang 1527669e9c86SHong Zhang /* These matrices are obtained in MatTransposeMatMultSymbolic() */ 1528669e9c86SHong Zhang /* 1) get R = Pd^T, Ro = Po^T */ 1529669e9c86SHong Zhang /*----------------------------*/ 15301cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd)); 1531acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd)); 15321cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro)); 1533acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro)); 1534669e9c86SHong Zhang 1535669e9c86SHong Zhang /* 2) compute numeric A_loc */ 1536669e9c86SHong Zhang /*--------------------------*/ 15379566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc)); 1538912837bbSHong Zhang 1539669e9c86SHong Zhang /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */ 15404ede91e3SHong Zhang A_loc = ptap->A_loc; 15419566063dSJacob Faibussowitsch PetscCall(((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd, A_loc, ptap->C_loc)); 15429566063dSJacob Faibussowitsch PetscCall(((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro, A_loc, ptap->C_oth)); 1543912837bbSHong Zhang C_loc = ptap->C_loc; 1544912837bbSHong Zhang C_oth = ptap->C_oth; 1545912837bbSHong Zhang 154669be949aSStefano Zampini /* add C_loc and C_oth to C */ 15479566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, &rend)); 1548912837bbSHong Zhang 1549912837bbSHong Zhang /* C_loc -> C */ 1550912837bbSHong Zhang cm = C_loc->rmap->N; 1551912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_loc->data; 1552912837bbSHong Zhang cols = c_seq->j; 1553912837bbSHong Zhang vals = c_seq->a; 1554912837bbSHong Zhang for (i = 0; i < cm; i++) { 1555912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1556912837bbSHong Zhang row = rstart + i; 15579566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15589371c9d4SSatish Balay cols += ncols; 15599371c9d4SSatish Balay vals += ncols; 1560912837bbSHong Zhang } 1561912837bbSHong Zhang 1562912837bbSHong Zhang /* Co -> C, off-processor part */ 1563912837bbSHong Zhang cm = C_oth->rmap->N; 1564912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_oth->data; 1565912837bbSHong Zhang cols = c_seq->j; 1566912837bbSHong Zhang vals = c_seq->a; 1567912837bbSHong Zhang for (i = 0; i < cm; i++) { 1568912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1569912837bbSHong Zhang row = p->garray[i]; 15709566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15719371c9d4SSatish Balay cols += ncols; 15729371c9d4SSatish Balay vals += ncols; 1573912837bbSHong Zhang } 15749566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 15759566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 15769566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 1577912837bbSHong Zhang PetscFunctionReturn(0); 1578912837bbSHong Zhang } 1579912837bbSHong Zhang 1580d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C) 1581d71ae5a4SJacob Faibussowitsch { 1582d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 15836718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1584d6ab1dc0SHong Zhang Mat_SeqAIJ *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data; 15851cdffd5eSHong Zhang Mat_APMPI *ap; 1586e745005bSHong Zhang PetscInt *adj; 1587e745005bSHong Zhang PetscInt i, j, k, anz, pnz, row, *cj, nexta; 1588e745005bSHong Zhang MatScalar *ada, *ca, valtmp; 1589d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n; 1590ce94432eSBarry Smith MPI_Comm comm; 1591d6ab1dc0SHong Zhang PetscMPIInt size, rank, taga, *len_s; 1592d6ab1dc0SHong Zhang PetscInt *owners, proc, nrows, **buf_ri_k, **nextrow, **nextci; 1593d6ab1dc0SHong Zhang PetscInt **buf_ri, **buf_rj; 1594d6ab1dc0SHong Zhang PetscInt cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */ 1595d6ab1dc0SHong Zhang MPI_Request *s_waits, *r_waits; 1596d6ab1dc0SHong Zhang MPI_Status *status; 1597d6ab1dc0SHong Zhang MatScalar **abuf_r, *ba_i, *pA, *coa, *ba; 1598ce496241SStefano Zampini const PetscScalar *dummy; 15994e201bd7SHong Zhang PetscInt *ai, *aj, *coi, *coj, *poJ, *pdJ; 1600d6ab1dc0SHong Zhang Mat A_loc; 1601d6ab1dc0SHong Zhang Mat_SeqAIJ *a_loc; 1602d6ab1dc0SHong Zhang 1603d6ab1dc0SHong Zhang PetscFunctionBegin; 16046718818eSStefano Zampini MatCheckProduct(C, 3); 16051cdffd5eSHong Zhang ap = (Mat_APMPI *)C->product->data; 16061cdffd5eSHong Zhang PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data"); 16071cdffd5eSHong Zhang PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 16089566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 16099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 16109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1611d6ab1dc0SHong Zhang 16121cdffd5eSHong Zhang merge = ap->merge; 1613d6ab1dc0SHong Zhang 1614e745005bSHong Zhang /* 2) compute numeric C_seq = P_loc^T*A_loc */ 1615e745005bSHong Zhang /*------------------------------------------*/ 1616d6ab1dc0SHong Zhang /* get data from symbolic products */ 16179371c9d4SSatish Balay coi = merge->coi; 16189371c9d4SSatish Balay coj = merge->coj; 16199566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(coi[pon] + 1, &coa)); 16209371c9d4SSatish Balay bi = merge->bi; 16219371c9d4SSatish Balay bj = merge->bj; 1622d6ab1dc0SHong Zhang owners = merge->rowmap->range; 16239566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bi[cm] + 1, &ba)); 1624d6ab1dc0SHong Zhang 1625d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 16261cdffd5eSHong Zhang A_loc = ap->A_loc; 16279566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc)); 1628d6ab1dc0SHong Zhang a_loc = (Mat_SeqAIJ *)(A_loc)->data; 1629d6ab1dc0SHong Zhang ai = a_loc->i; 1630d6ab1dc0SHong Zhang aj = a_loc->j; 1631d6ab1dc0SHong Zhang 1632ce496241SStefano Zampini /* trigger copy to CPU */ 16339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy)); 16349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy)); 16359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy)); 16369566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy)); 1637d6ab1dc0SHong Zhang for (i = 0; i < am; i++) { 1638d6ab1dc0SHong Zhang anz = ai[i + 1] - ai[i]; 1639d6ab1dc0SHong Zhang adj = aj + ai[i]; 1640d6ab1dc0SHong Zhang ada = a_loc->a + ai[i]; 1641d6ab1dc0SHong Zhang 1642d6ab1dc0SHong Zhang /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */ 1643e745005bSHong Zhang /*-------------------------------------------------------------*/ 1644d6ab1dc0SHong Zhang /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */ 1645d6ab1dc0SHong Zhang pnz = po->i[i + 1] - po->i[i]; 1646d6ab1dc0SHong Zhang poJ = po->j + po->i[i]; 1647d6ab1dc0SHong Zhang pA = po->a + po->i[i]; 1648d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1649d6ab1dc0SHong Zhang row = poJ[j]; 1650d6ab1dc0SHong Zhang cj = coj + coi[row]; 1651d6ab1dc0SHong Zhang ca = coa + coi[row]; 1652e745005bSHong Zhang /* perform sparse axpy */ 1653e745005bSHong Zhang nexta = 0; 1654d6ab1dc0SHong Zhang valtmp = pA[j]; 1655e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1656e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1657e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1658e745005bSHong Zhang nexta++; 1659d6ab1dc0SHong Zhang } 1660e745005bSHong Zhang } 16619566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1662d6ab1dc0SHong Zhang } 1663d6ab1dc0SHong Zhang 1664d6ab1dc0SHong Zhang /* put the value into Cd (diagonal part) */ 1665d6ab1dc0SHong Zhang pnz = pd->i[i + 1] - pd->i[i]; 1666d6ab1dc0SHong Zhang pdJ = pd->j + pd->i[i]; 1667d6ab1dc0SHong Zhang pA = pd->a + pd->i[i]; 1668d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1669d6ab1dc0SHong Zhang row = pdJ[j]; 1670d6ab1dc0SHong Zhang cj = bj + bi[row]; 1671d6ab1dc0SHong Zhang ca = ba + bi[row]; 1672e745005bSHong Zhang /* perform sparse axpy */ 1673e745005bSHong Zhang nexta = 0; 1674d6ab1dc0SHong Zhang valtmp = pA[j]; 1675e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1676e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1677e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1678e745005bSHong Zhang nexta++; 1679d6ab1dc0SHong Zhang } 1680e745005bSHong Zhang } 16819566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1682d6ab1dc0SHong Zhang } 1683d6ab1dc0SHong Zhang } 1684d6ab1dc0SHong Zhang 1685d6ab1dc0SHong Zhang /* 3) send and recv matrix values coa */ 1686d6ab1dc0SHong Zhang /*------------------------------------*/ 1687d6ab1dc0SHong Zhang buf_ri = merge->buf_ri; 1688d6ab1dc0SHong Zhang buf_rj = merge->buf_rj; 1689d6ab1dc0SHong Zhang len_s = merge->len_s; 16909566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &taga)); 16919566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 1692d6ab1dc0SHong Zhang 16939566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend + 1, &s_waits, size, &status)); 1694d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1695d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1696d6ab1dc0SHong Zhang i = merge->owners_co[proc]; 16979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 1698d6ab1dc0SHong Zhang k++; 1699d6ab1dc0SHong Zhang } 17009566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 17019566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 1702d6ab1dc0SHong Zhang 17039566063dSJacob Faibussowitsch PetscCall(PetscFree2(s_waits, status)); 17049566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 17059566063dSJacob Faibussowitsch PetscCall(PetscFree(coa)); 1706d6ab1dc0SHong Zhang 1707d6ab1dc0SHong Zhang /* 4) insert local Cseq and received values into Cmpi */ 1708d6ab1dc0SHong Zhang /*----------------------------------------------------*/ 17099566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1710d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1711e745005bSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1712d6ab1dc0SHong Zhang nrows = *(buf_ri_k[k]); 1713d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1714a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1715d6ab1dc0SHong Zhang } 1716d6ab1dc0SHong Zhang 1717d6ab1dc0SHong Zhang for (i = 0; i < cm; i++) { 1718d6ab1dc0SHong Zhang row = owners[rank] + i; /* global row index of C_seq */ 1719d6ab1dc0SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of C */ 1720d6ab1dc0SHong Zhang ba_i = ba + bi[i]; 1721d6ab1dc0SHong Zhang bnz = bi[i + 1] - bi[i]; 1722d6ab1dc0SHong Zhang /* add received vals into ba */ 1723d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1724d6ab1dc0SHong Zhang /* i-th row */ 1725d6ab1dc0SHong Zhang if (i == *nextrow[k]) { 1726d6ab1dc0SHong Zhang cnz = *(nextci[k] + 1) - *nextci[k]; 1727d6ab1dc0SHong Zhang cj = buf_rj[k] + *(nextci[k]); 1728d6ab1dc0SHong Zhang ca = abuf_r[k] + *(nextci[k]); 1729d6ab1dc0SHong Zhang nextcj = 0; 1730d6ab1dc0SHong Zhang for (j = 0; nextcj < cnz; j++) { 1731d6ab1dc0SHong Zhang if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */ 1732d6ab1dc0SHong Zhang ba_i[j] += ca[nextcj++]; 1733d6ab1dc0SHong Zhang } 1734d6ab1dc0SHong Zhang } 17359371c9d4SSatish Balay nextrow[k]++; 17369371c9d4SSatish Balay nextci[k]++; 17379566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * cnz)); 1738d6ab1dc0SHong Zhang } 1739d6ab1dc0SHong Zhang } 17409566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES)); 1741d6ab1dc0SHong Zhang } 17429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 17439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1744d6ab1dc0SHong Zhang 17459566063dSJacob Faibussowitsch PetscCall(PetscFree(ba)); 17469566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 17479566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 17489566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 1749d6ab1dc0SHong Zhang PetscFunctionReturn(0); 1750d6ab1dc0SHong Zhang } 1751d6ab1dc0SHong Zhang 1752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C) 1753d71ae5a4SJacob Faibussowitsch { 1754b419842dSStefano Zampini Mat A_loc; 17551cdffd5eSHong Zhang Mat_APMPI *ap; 17560298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 17576718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data; 1758d6ab1dc0SHong Zhang PetscInt *pdti, *pdtj, *poti, *potj, *ptJ; 1759d6ab1dc0SHong Zhang PetscInt nnz; 1760d6ab1dc0SHong Zhang PetscInt *lnk, *owners_co, *coi, *coj, i, k, pnz, row; 1761d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, pn = P->cmap->n; 1762ce94432eSBarry Smith MPI_Comm comm; 1763d6ab1dc0SHong Zhang PetscMPIInt size, rank, tagi, tagj, *len_si, *len_s, *len_ri; 1764d6ab1dc0SHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k; 1765d6ab1dc0SHong Zhang PetscInt len, proc, *dnz, *onz, *owners; 1766d6ab1dc0SHong Zhang PetscInt nzi, *bi, *bj; 1767d6ab1dc0SHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1768d6ab1dc0SHong Zhang MPI_Request *swaits, *rwaits; 1769d6ab1dc0SHong Zhang MPI_Status *sstatus, rstatus; 1770d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 1771d6ab1dc0SHong Zhang PetscInt *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j; 1772d6ab1dc0SHong Zhang PetscReal afill = 1.0, afill_tmp; 1773*eec179cfSJacob Faibussowitsch PetscInt rstart = P->cmap->rstart, rmax, Armax; 1774b419842dSStefano Zampini Mat_SeqAIJ *a_loc; 1775*eec179cfSJacob Faibussowitsch PetscHMapI ta; 1776b92f168fSBarry Smith MatType mtype; 1777d6ab1dc0SHong Zhang 1778d6ab1dc0SHong Zhang PetscFunctionBegin; 17799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1780d6ab1dc0SHong Zhang /* check if matrix local sizes are compatible */ 17819371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, 17829371c9d4SSatish Balay A->rmap->rend, P->rmap->rstart, P->rmap->rend); 1783d6ab1dc0SHong Zhang 17849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1786d6ab1dc0SHong Zhang 17873cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 17881cdffd5eSHong Zhang PetscCall(PetscNew(&ap)); 1789d6ab1dc0SHong Zhang 1790d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 17919566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc)); 17922205254eSKarl Rupp 17931cdffd5eSHong Zhang ap->A_loc = A_loc; 1794d6ab1dc0SHong Zhang a_loc = (Mat_SeqAIJ *)(A_loc)->data; 1795d6ab1dc0SHong Zhang ai = a_loc->i; 1796d6ab1dc0SHong Zhang aj = a_loc->j; 1797d6ab1dc0SHong Zhang 1798d6ab1dc0SHong Zhang /* determine symbolic Co=(p->B)^T*A - send to others */ 1799d6ab1dc0SHong Zhang /*----------------------------------------------------*/ 18009566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 18019566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 1802d6ab1dc0SHong Zhang pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors 1803d6ab1dc0SHong Zhang >= (num of nonzero rows of C_seq) - pn */ 18049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pon + 1, &coi)); 1805d6ab1dc0SHong Zhang coi[0] = 0; 1806d6ab1dc0SHong Zhang 1807d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */ 1808f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am])); 18099566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1810d6ab1dc0SHong Zhang current_space = free_space; 181119f0e57aSHong Zhang 1812d6ab1dc0SHong Zhang /* create and initialize a linked list */ 1813*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta)); 18144b38b95cSHong Zhang MatRowMergeMax_SeqAIJ(a_loc, am, ta); 1815*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 181633ba5e2fSHong Zhang 18179566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1818d6ab1dc0SHong Zhang 1819d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1820d6ab1dc0SHong Zhang pnz = poti[i + 1] - poti[i]; 1821d6ab1dc0SHong Zhang ptJ = potj + poti[i]; 1822d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1823d6ab1dc0SHong Zhang row = ptJ[j]; /* row of A_loc == col of Pot */ 1824d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1825d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1826d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 18279566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1828d6ab1dc0SHong Zhang } 1829d6ab1dc0SHong Zhang nnz = lnk[0]; 1830d6ab1dc0SHong Zhang 1831d6ab1dc0SHong Zhang /* If free space is not available, double the total space in the list */ 1832d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 18339566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1834d6ab1dc0SHong Zhang nspacedouble++; 1835d6ab1dc0SHong Zhang } 1836d6ab1dc0SHong Zhang 1837d6ab1dc0SHong Zhang /* Copy data into free space, and zero out denserows */ 18389566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 18392205254eSKarl Rupp 1840d6ab1dc0SHong Zhang current_space->array += nnz; 1841d6ab1dc0SHong Zhang current_space->local_used += nnz; 1842d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 18432205254eSKarl Rupp 1844d6ab1dc0SHong Zhang coi[i + 1] = coi[i] + nnz; 1845d6ab1dc0SHong Zhang } 1846d6ab1dc0SHong Zhang 18479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(coi[pon] + 1, &coj)); 18489566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, coj)); 18499566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */ 18502205254eSKarl Rupp 1851118727c9SMark F. Adams afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1); 1852d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 1853d6ab1dc0SHong Zhang 1854d6ab1dc0SHong Zhang /* send j-array (coj) of Co to other processors */ 1855d6ab1dc0SHong Zhang /*----------------------------------------------*/ 1856d6ab1dc0SHong Zhang /* determine row ownership */ 18579566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 18589566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 18592205254eSKarl Rupp 1860d6ab1dc0SHong Zhang merge->rowmap->n = pn; 1861d6ab1dc0SHong Zhang merge->rowmap->bs = 1; 18622205254eSKarl Rupp 18639566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 1864d6ab1dc0SHong Zhang owners = merge->rowmap->range; 1865d6ab1dc0SHong Zhang 1866d6ab1dc0SHong Zhang /* determine the number of messages to send, their lengths */ 18679566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &len_si)); 18689566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &merge->len_s)); 18692205254eSKarl Rupp 1870d6ab1dc0SHong Zhang len_s = merge->len_s; 1871d6ab1dc0SHong Zhang merge->nsend = 0; 1872d6ab1dc0SHong Zhang 18739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size + 2, &owners_co)); 1874d6ab1dc0SHong Zhang 1875d6ab1dc0SHong Zhang proc = 0; 1876d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1877d6ab1dc0SHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 1878d6ab1dc0SHong Zhang len_si[proc]++; /* num of rows in Co to be sent to [proc] */ 1879d6ab1dc0SHong Zhang len_s[proc] += coi[i + 1] - coi[i]; 1880d6ab1dc0SHong Zhang } 1881d6ab1dc0SHong Zhang 1882d6ab1dc0SHong Zhang len = 0; /* max length of buf_si[] */ 1883d6ab1dc0SHong Zhang owners_co[0] = 0; 1884d6ab1dc0SHong Zhang for (proc = 0; proc < size; proc++) { 1885d6ab1dc0SHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1886d6ab1dc0SHong Zhang if (len_si[proc]) { 1887d6ab1dc0SHong Zhang merge->nsend++; 1888d6ab1dc0SHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); 1889d6ab1dc0SHong Zhang len += len_si[proc]; 1890d6ab1dc0SHong Zhang } 1891d6ab1dc0SHong Zhang } 1892d6ab1dc0SHong Zhang 1893d6ab1dc0SHong Zhang /* determine the number and length of messages to receive for coi and coj */ 18949566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 18959566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 1896d6ab1dc0SHong Zhang 1897d6ab1dc0SHong Zhang /* post the Irecv and Isend of coj */ 18989566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 18999566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits)); 19009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &swaits)); 1901d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1902d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1903d6ab1dc0SHong Zhang i = owners_co[proc]; 19049566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1905d6ab1dc0SHong Zhang k++; 1906d6ab1dc0SHong Zhang } 1907d6ab1dc0SHong Zhang 1908d6ab1dc0SHong Zhang /* receives and sends of coj are complete */ 19099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &sstatus)); 1910d6ab1dc0SHong Zhang for (i = 0; i < merge->nrecv; i++) { 1911ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1913d6ab1dc0SHong Zhang } 19149566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19159566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 1916d6ab1dc0SHong Zhang 19170acc65b4SHong Zhang /* add received column indices into table to update Armax */ 1918c4762a1bSJed Brown /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */ 19190acc65b4SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 19200acc65b4SHong Zhang Jptr = buf_rj[k]; 1921*eec179cfSJacob Faibussowitsch for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISetWithMode(ta, *(Jptr + j) + 1, 1, INSERT_VALUES)); 19220acc65b4SHong Zhang } 1923*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 19240acc65b4SHong Zhang 1925d6ab1dc0SHong Zhang /* send and recv coi */ 1926d6ab1dc0SHong Zhang /*-------------------*/ 19279566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 19289566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits)); 19299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 1930d6ab1dc0SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1931d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1932d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1933d6ab1dc0SHong Zhang /* form outgoing message for i-structure: 1934d6ab1dc0SHong Zhang buf_si[0]: nrows to be sent 1935d6ab1dc0SHong Zhang [1:nrows]: row index (global) 1936d6ab1dc0SHong Zhang [nrows+1:2*nrows+1]: i-structure index 1937d6ab1dc0SHong Zhang */ 1938d6ab1dc0SHong Zhang /*-------------------------------------------*/ 1939d6ab1dc0SHong Zhang nrows = len_si[proc] / 2 - 1; 1940d6ab1dc0SHong Zhang buf_si_i = buf_si + nrows + 1; 1941d6ab1dc0SHong Zhang buf_si[0] = nrows; 1942d6ab1dc0SHong Zhang buf_si_i[0] = 0; 1943d6ab1dc0SHong Zhang nrows = 0; 1944d6ab1dc0SHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1945d6ab1dc0SHong Zhang nzi = coi[i + 1] - coi[i]; 1946d6ab1dc0SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1947d6ab1dc0SHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1948d6ab1dc0SHong Zhang nrows++; 1949d6ab1dc0SHong Zhang } 19509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1951d6ab1dc0SHong Zhang k++; 1952d6ab1dc0SHong Zhang buf_si += len_si[proc]; 1953d6ab1dc0SHong Zhang } 1954d6ab1dc0SHong Zhang i = merge->nrecv; 1955d6ab1dc0SHong Zhang while (i--) { 1956ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1958d6ab1dc0SHong Zhang } 19599566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19609566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 19619566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 19629566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 19639566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 19649566063dSJacob Faibussowitsch PetscCall(PetscFree(sstatus)); 19659566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1966d6ab1dc0SHong Zhang 1967d6ab1dc0SHong Zhang /* compute the local portion of C (mpi mat) */ 1968d6ab1dc0SHong Zhang /*------------------------------------------*/ 1969d6ab1dc0SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 19709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pn + 1, &bi)); 1971d6ab1dc0SHong Zhang bi[0] = 0; 1972d6ab1dc0SHong Zhang 1973d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(P) + nnz(AP)) */ 1974f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am]))); 19759566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1976d6ab1dc0SHong Zhang current_space = free_space; 1977d6ab1dc0SHong Zhang 19789566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1979d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1980d6ab1dc0SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1981d6ab1dc0SHong Zhang nrows = *buf_ri_k[k]; 1982d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 19832d4ee042Sprj- nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure */ 1984d6ab1dc0SHong Zhang } 1985d6ab1dc0SHong Zhang 19869566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1987d0609cedSBarry Smith MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz); 1988d6ab1dc0SHong Zhang rmax = 0; 1989d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 1990d6ab1dc0SHong Zhang /* add pdt[i,:]*AP into lnk */ 1991d6ab1dc0SHong Zhang pnz = pdti[i + 1] - pdti[i]; 1992d6ab1dc0SHong Zhang ptJ = pdtj + pdti[i]; 1993d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1994d6ab1dc0SHong Zhang row = ptJ[j]; /* row of AP == col of Pt */ 1995d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1996d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1997d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 19989566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1999d6ab1dc0SHong Zhang } 2000d6ab1dc0SHong Zhang 2001d6ab1dc0SHong Zhang /* add received col data into lnk */ 2002d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 2003d6ab1dc0SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 2004d6ab1dc0SHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 2005d6ab1dc0SHong Zhang Jptr = buf_rj[k] + *nextci[k]; 20069566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk)); 20079371c9d4SSatish Balay nextrow[k]++; 20089371c9d4SSatish Balay nextci[k]++; 2009d6ab1dc0SHong Zhang } 2010d6ab1dc0SHong Zhang } 20118c78258cSHong Zhang 20128c78258cSHong Zhang /* add missing diagonal entry */ 20138c78258cSHong Zhang if (C->force_diagonals) { 20148c78258cSHong Zhang k = i + owners[rank]; /* column index */ 20159566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk)); 20168c78258cSHong Zhang } 20178c78258cSHong Zhang 2018d6ab1dc0SHong Zhang nnz = lnk[0]; 2019d6ab1dc0SHong Zhang 2020d6ab1dc0SHong Zhang /* if free space is not available, make more free space */ 2021d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 20229566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 2023d6ab1dc0SHong Zhang nspacedouble++; 2024d6ab1dc0SHong Zhang } 2025d6ab1dc0SHong Zhang /* copy data into free space, then initialize lnk */ 20269566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 20279566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz)); 20282205254eSKarl Rupp 2029d6ab1dc0SHong Zhang current_space->array += nnz; 2030d6ab1dc0SHong Zhang current_space->local_used += nnz; 2031d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 20322205254eSKarl Rupp 2033d6ab1dc0SHong Zhang bi[i + 1] = bi[i] + nnz; 2034d6ab1dc0SHong Zhang if (nnz > rmax) rmax = nnz; 2035d6ab1dc0SHong Zhang } 20369566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 2037d6ab1dc0SHong Zhang 20389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[pn] + 1, &bj)); 20399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 2040118727c9SMark F. Adams afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1); 2041d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 20429566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 2043*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 20449566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 20459566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 2046d6ab1dc0SHong Zhang 20474222ddf1SHong Zhang /* create symbolic parallel matrix C - why cannot be assembled in Numeric part */ 20484222ddf1SHong Zhang /*-------------------------------------------------------------------------------*/ 20499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE)); 20509566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(C, PetscAbs(P->cmap->bs), PetscAbs(A->cmap->bs))); 20519566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 20529566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 20539566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 2054d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 20559566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(C, 1)); 20569566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2057d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 2058d6ab1dc0SHong Zhang row = i + rstart; 2059d6ab1dc0SHong Zhang nnz = bi[i + 1] - bi[i]; 2060d6ab1dc0SHong Zhang Jptr = bj + bi[i]; 20619566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES)); 2062d6ab1dc0SHong Zhang } 20639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20659566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2066d6ab1dc0SHong Zhang merge->bi = bi; 2067d6ab1dc0SHong Zhang merge->bj = bj; 2068d6ab1dc0SHong Zhang merge->coi = coi; 2069d6ab1dc0SHong Zhang merge->coj = coj; 2070d6ab1dc0SHong Zhang merge->buf_ri = buf_ri; 2071d6ab1dc0SHong Zhang merge->buf_rj = buf_rj; 2072d6ab1dc0SHong Zhang merge->owners_co = owners_co; 2073d6ab1dc0SHong Zhang 20744222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 20751cdffd5eSHong Zhang C->product->data = ap; 20766718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 20771cdffd5eSHong Zhang ap->merge = merge; 2078a560ef98SHong Zhang 20794222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ; 2080f96d37fcSHong Zhang 2081f96d37fcSHong Zhang #if defined(PETSC_USE_INFO) 2082f96d37fcSHong Zhang if (bi[pn] != 0) { 20839566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 20849566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill)); 2085f96d37fcSHong Zhang } else { 20869566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 2087f96d37fcSHong Zhang } 2088f96d37fcSHong Zhang #endif 2089f96d37fcSHong Zhang PetscFunctionReturn(0); 2090f96d37fcSHong Zhang } 20914222ddf1SHong Zhang 20924222ddf1SHong Zhang /* ---------------------------------------------------------------- */ 2093d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C) 2094d71ae5a4SJacob Faibussowitsch { 20954222ddf1SHong Zhang Mat_Product *product = C->product; 20964222ddf1SHong Zhang Mat A = product->A, B = product->B; 20974222ddf1SHong Zhang PetscReal fill = product->fill; 20984222ddf1SHong Zhang PetscBool flg; 20994222ddf1SHong Zhang 21004222ddf1SHong Zhang PetscFunctionBegin; 21014222ddf1SHong Zhang /* scalable */ 21029566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "scalable", &flg)); 21034222ddf1SHong Zhang if (flg) { 21049566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 21054222ddf1SHong Zhang goto next; 21064222ddf1SHong Zhang } 21074222ddf1SHong Zhang 21084222ddf1SHong Zhang /* nonscalable */ 21099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg)); 21104222ddf1SHong Zhang if (flg) { 21119566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 21124222ddf1SHong Zhang goto next; 21134222ddf1SHong Zhang } 21144222ddf1SHong Zhang 21154222ddf1SHong Zhang /* matmatmult */ 21169566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 21174222ddf1SHong Zhang if (flg) { 21184222ddf1SHong Zhang Mat At; 21194222ddf1SHong Zhang Mat_APMPI *ptap; 21204222ddf1SHong Zhang 21219566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 21229566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C)); 21236718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 21244222ddf1SHong Zhang if (ptap) { 21254222ddf1SHong Zhang ptap->Pt = At; 21266718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 21274222ddf1SHong Zhang } 21284222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult; 21294222ddf1SHong Zhang goto next; 21304222ddf1SHong Zhang } 21314222ddf1SHong Zhang 21324e84afc0SStefano Zampini /* backend general code */ 21339566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "backend", &flg)); 21344e84afc0SStefano Zampini if (flg) { 21359566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 21364e84afc0SStefano Zampini PetscFunctionReturn(0); 21374e84afc0SStefano Zampini } 21384e84afc0SStefano Zampini 21394222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported"); 21404222ddf1SHong Zhang 21414222ddf1SHong Zhang next: 21424222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 21434222ddf1SHong Zhang PetscFunctionReturn(0); 21444222ddf1SHong Zhang } 21454222ddf1SHong Zhang 21464222ddf1SHong Zhang /* ---------------------------------------------------------------- */ 21474222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */ 2148d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C) 2149d71ae5a4SJacob Faibussowitsch { 21504222ddf1SHong Zhang Mat_Product *product = C->product; 21514222ddf1SHong Zhang Mat A = product->A, B = product->B; 21524222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 21534e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"}; 21544e84afc0SStefano Zampini PetscInt nalg = 5; 21554222ddf1SHong Zhang #else 21569371c9d4SSatish Balay const char *algTypes[4] = { 21579371c9d4SSatish Balay "scalable", 21589371c9d4SSatish Balay "nonscalable", 21599371c9d4SSatish Balay "seqmpi", 21609371c9d4SSatish Balay "backend", 21619371c9d4SSatish Balay }; 21624e84afc0SStefano Zampini PetscInt nalg = 4; 21634222ddf1SHong Zhang #endif 21644222ddf1SHong Zhang PetscInt alg = 1; /* set nonscalable algorithm as default */ 21654222ddf1SHong Zhang PetscBool flg; 21664222ddf1SHong Zhang MPI_Comm comm; 21674222ddf1SHong Zhang 21684222ddf1SHong Zhang PetscFunctionBegin; 21699566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21704222ddf1SHong Zhang 21714222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 21729566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 21734222ddf1SHong Zhang if (flg) { 21749566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21754222ddf1SHong Zhang 21764222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 21774222ddf1SHong Zhang if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 21784222ddf1SHong Zhang MatInfo Ainfo, Binfo; 21794222ddf1SHong Zhang PetscInt nz_local; 21804222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 21814222ddf1SHong Zhang 21829566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 21839566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 21844222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 21854222ddf1SHong Zhang 21864222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 21871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 21884222ddf1SHong Zhang 21894222ddf1SHong Zhang if (alg_scalable) { 21904222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 21919566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21929566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 21934222ddf1SHong Zhang } 21944222ddf1SHong Zhang } 21954222ddf1SHong Zhang } 21964222ddf1SHong Zhang 21974222ddf1SHong Zhang /* Get runtime option */ 21984222ddf1SHong Zhang if (product->api_user) { 2199d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 22009566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2201d0609cedSBarry Smith PetscOptionsEnd(); 22024222ddf1SHong Zhang } else { 2203d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 22049566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2205d0609cedSBarry Smith PetscOptionsEnd(); 22064222ddf1SHong Zhang } 220748a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22084222ddf1SHong Zhang 22094222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ; 22104222ddf1SHong Zhang PetscFunctionReturn(0); 22114222ddf1SHong Zhang } 22124222ddf1SHong Zhang 2213d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C) 2214d71ae5a4SJacob Faibussowitsch { 22158a9c020eSBarry Smith PetscFunctionBegin; 22168a9c020eSBarry Smith PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 22178a9c020eSBarry Smith C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ; 22188a9c020eSBarry Smith PetscFunctionReturn(0); 22198a9c020eSBarry Smith } 22208a9c020eSBarry Smith 22214222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */ 2222d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C) 2223d71ae5a4SJacob Faibussowitsch { 22244222ddf1SHong Zhang Mat_Product *product = C->product; 22254222ddf1SHong Zhang Mat A = product->A, B = product->B; 22264e84afc0SStefano Zampini const char *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"}; 22274e84afc0SStefano Zampini PetscInt nalg = 4; 22284222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22294222ddf1SHong Zhang PetscBool flg; 22304222ddf1SHong Zhang MPI_Comm comm; 22314222ddf1SHong Zhang 22324222ddf1SHong Zhang PetscFunctionBegin; 22334222ddf1SHong Zhang /* Check matrix local sizes */ 22349566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22359371c9d4SSatish Balay PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22369371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 22374222ddf1SHong Zhang 22384222ddf1SHong Zhang /* Set default algorithm */ 22399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 224048a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22414222ddf1SHong Zhang 22424222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22434222ddf1SHong Zhang if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 22444222ddf1SHong Zhang MatInfo Ainfo, Binfo; 22454222ddf1SHong Zhang PetscInt nz_local; 22464222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22474222ddf1SHong Zhang 22489566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22499566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 22504222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 22514222ddf1SHong Zhang 22524222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22531c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 22544222ddf1SHong Zhang 22554222ddf1SHong Zhang if (alg_scalable) { 22564222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 22579566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22589566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 22594222ddf1SHong Zhang } 22604222ddf1SHong Zhang } 22614222ddf1SHong Zhang 22624222ddf1SHong Zhang /* Get runtime option */ 22634222ddf1SHong Zhang if (product->api_user) { 2264d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 22659566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2266d0609cedSBarry Smith PetscOptionsEnd(); 22674222ddf1SHong Zhang } else { 2268d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 22699566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2270d0609cedSBarry Smith PetscOptionsEnd(); 22714222ddf1SHong Zhang } 227248a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22734222ddf1SHong Zhang 22744222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ; 22754222ddf1SHong Zhang PetscFunctionReturn(0); 22764222ddf1SHong Zhang } 22774222ddf1SHong Zhang 2278d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C) 2279d71ae5a4SJacob Faibussowitsch { 22804222ddf1SHong Zhang Mat_Product *product = C->product; 22814222ddf1SHong Zhang Mat A = product->A, P = product->B; 22824222ddf1SHong Zhang MPI_Comm comm; 22834222ddf1SHong Zhang PetscBool flg; 22844222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22854222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 22864e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"}; 22874222ddf1SHong Zhang PetscInt nalg = 5; 22884e84afc0SStefano Zampini #else 22894e84afc0SStefano Zampini const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"}; 22904e84afc0SStefano Zampini PetscInt nalg = 6; 22914222ddf1SHong Zhang #endif 22924222ddf1SHong Zhang PetscInt pN = P->cmap->N; 22934222ddf1SHong Zhang 22944222ddf1SHong Zhang PetscFunctionBegin; 22954222ddf1SHong Zhang /* Check matrix local sizes */ 22969566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22979371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22989371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend); 22999371c9d4SSatish Balay PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 23009371c9d4SSatish Balay A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend); 23014222ddf1SHong Zhang 23024222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 23039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 23044222ddf1SHong Zhang if (flg) { 23059566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23064222ddf1SHong Zhang 23074222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 23084222ddf1SHong Zhang if (pN > 100000) { 23094222ddf1SHong Zhang MatInfo Ainfo, Pinfo; 23104222ddf1SHong Zhang PetscInt nz_local; 23114222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 23124222ddf1SHong Zhang 23139566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 23149566063dSJacob Faibussowitsch PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo)); 23154222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated); 23164222ddf1SHong Zhang 23174222ddf1SHong Zhang if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 23181c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 23194222ddf1SHong Zhang 23204222ddf1SHong Zhang if (alg_scalable) { 23214222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 23229566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23234222ddf1SHong Zhang } 23244222ddf1SHong Zhang } 23254222ddf1SHong Zhang } 23264222ddf1SHong Zhang 23274222ddf1SHong Zhang /* Get runtime option */ 23284222ddf1SHong Zhang if (product->api_user) { 2329d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 23309566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2331d0609cedSBarry Smith PetscOptionsEnd(); 23324222ddf1SHong Zhang } else { 2333d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 23349566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2335d0609cedSBarry Smith PetscOptionsEnd(); 23364222ddf1SHong Zhang } 233748a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23384222ddf1SHong Zhang 23394222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ; 23404222ddf1SHong Zhang PetscFunctionReturn(0); 23414222ddf1SHong Zhang } 23424222ddf1SHong Zhang 2343d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C) 2344d71ae5a4SJacob Faibussowitsch { 23454222ddf1SHong Zhang Mat_Product *product = C->product; 23464222ddf1SHong Zhang Mat A = product->A, R = product->B; 23474222ddf1SHong Zhang 23484222ddf1SHong Zhang PetscFunctionBegin; 23494222ddf1SHong Zhang /* Check matrix local sizes */ 23509371c9d4SSatish Balay PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n, 23519371c9d4SSatish Balay A->rmap->n, R->rmap->n, R->cmap->n); 23524222ddf1SHong Zhang 23534222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ; 23544222ddf1SHong Zhang PetscFunctionReturn(0); 23554222ddf1SHong Zhang } 23564222ddf1SHong Zhang 23574222ddf1SHong Zhang /* 23584222ddf1SHong Zhang Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm 23594222ddf1SHong Zhang */ 2360d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C) 2361d71ae5a4SJacob Faibussowitsch { 23624222ddf1SHong Zhang Mat_Product *product = C->product; 23634222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23644222ddf1SHong Zhang PetscInt alg = 1; /* default algorithm */ 23654222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "nonscalable", "seqmpi"}; 23664222ddf1SHong Zhang PetscInt nalg = 3; 23674222ddf1SHong Zhang 23684222ddf1SHong Zhang PetscFunctionBegin; 23694222ddf1SHong Zhang /* Set default algorithm */ 23709566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 237148a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23724222ddf1SHong Zhang 23734222ddf1SHong Zhang /* Get runtime option */ 23744222ddf1SHong Zhang if (product->api_user) { 2375d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 23769566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2377d0609cedSBarry Smith PetscOptionsEnd(); 23784222ddf1SHong Zhang } else { 2379d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 23809566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2381d0609cedSBarry Smith PetscOptionsEnd(); 23824222ddf1SHong Zhang } 238348a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23844222ddf1SHong Zhang 23854222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ; 23864222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 23874222ddf1SHong Zhang PetscFunctionReturn(0); 23884222ddf1SHong Zhang } 23894222ddf1SHong Zhang 2390d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C) 2391d71ae5a4SJacob Faibussowitsch { 23924222ddf1SHong Zhang Mat_Product *product = C->product; 23934222ddf1SHong Zhang 23944222ddf1SHong Zhang PetscFunctionBegin; 23954222ddf1SHong Zhang switch (product->type) { 2396d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2397d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 2398d71ae5a4SJacob Faibussowitsch break; 2399d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2400d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C)); 2401d71ae5a4SJacob Faibussowitsch break; 2402d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2403d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C)); 2404d71ae5a4SJacob Faibussowitsch break; 2405d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 2406d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C)); 2407d71ae5a4SJacob Faibussowitsch break; 2408d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt: 2409d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C)); 2410d71ae5a4SJacob Faibussowitsch break; 2411d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 2412d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C)); 2413d71ae5a4SJacob Faibussowitsch break; 2414d71ae5a4SJacob Faibussowitsch default: 2415d71ae5a4SJacob Faibussowitsch break; 24164222ddf1SHong Zhang } 24174222ddf1SHong Zhang PetscFunctionReturn(0); 24184222ddf1SHong Zhang } 2419