xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision eec179cf895b6fbcd6a0b58694319392b06e361b)
1be1d678aSKris Buschelman 
22499ec78SHong Zhang /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
42499ec78SHong Zhang           C = A * B
52499ec78SHong Zhang */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
8c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
9c6db04a5SJed Brown #include <petscbt.h>
10c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
11af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1297929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
131634b032SHong Zhang 
145e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
154222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
165e5acdf2Sstefano_zampini #endif
175e5acdf2Sstefano_zampini 
18d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
19d71ae5a4SJacob Faibussowitsch {
208a9c020eSBarry Smith   Mat_Product *product = C->product;
218a9c020eSBarry Smith   Mat          B       = product->B;
228a9c020eSBarry Smith 
238a9c020eSBarry Smith   PetscFunctionBegin;
248a9c020eSBarry Smith   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
258a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
268a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
278a9c020eSBarry Smith   PetscFunctionReturn(0);
288a9c020eSBarry Smith }
298a9c020eSBarry Smith 
30d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
31d71ae5a4SJacob Faibussowitsch {
324222ddf1SHong Zhang   Mat_Product        *product = C->product;
334222ddf1SHong Zhang   Mat                 A = product->A, B = product->B;
344222ddf1SHong Zhang   MatProductAlgorithm alg  = product->alg;
354222ddf1SHong Zhang   PetscReal           fill = product->fill;
365e68f438SHong Zhang   PetscBool           flg;
372499ec78SHong Zhang 
382499ec78SHong Zhang   PetscFunctionBegin;
394222ddf1SHong Zhang   /* scalable */
409566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
414222ddf1SHong Zhang   if (flg) {
429566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
436718818eSStefano Zampini     PetscFunctionReturn(0);
440fc8cf34SHong Zhang   }
457d0a89b7SHong Zhang 
464222ddf1SHong Zhang   /* nonscalable */
479566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
484222ddf1SHong Zhang   if (flg) {
499566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
506718818eSStefano Zampini     PetscFunctionReturn(0);
514222ddf1SHong Zhang   }
524222ddf1SHong Zhang 
534222ddf1SHong Zhang   /* seqmpi */
549566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
554222ddf1SHong Zhang   if (flg) {
569566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
576718818eSStefano Zampini     PetscFunctionReturn(0);
584222ddf1SHong Zhang   }
594222ddf1SHong Zhang 
604e84afc0SStefano Zampini   /* backend general code */
619566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "backend", &flg));
624e84afc0SStefano Zampini   if (flg) {
639566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
644e84afc0SStefano Zampini     PetscFunctionReturn(0);
654e84afc0SStefano Zampini   }
664e84afc0SStefano Zampini 
674222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
689566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
694222ddf1SHong Zhang   if (flg) {
709566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
714222ddf1SHong Zhang     PetscFunctionReturn(0);
724222ddf1SHong Zhang   }
734222ddf1SHong Zhang #endif
744222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
752499ec78SHong Zhang }
762499ec78SHong Zhang 
77d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
78d71ae5a4SJacob Faibussowitsch {
796718818eSStefano Zampini   Mat_APMPI *ptap = (Mat_APMPI *)data;
80598bc09dSHong Zhang 
81598bc09dSHong Zhang   PetscFunctionBegin;
829566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
839566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
869566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
909566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
91598bc09dSHong Zhang   PetscFunctionReturn(0);
92598bc09dSHong Zhang }
93598bc09dSHong Zhang 
94d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C)
95d71ae5a4SJacob Faibussowitsch {
964ae0847bSHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
97598bc09dSHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data;
98598bc09dSHong Zhang   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data;
99c12557a1SHong Zhang   PetscScalar       *cda = cd->a, *coa = co->a;
100598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
1019ce11a7cSHong Zhang   PetscScalar       *apa, *ca;
102c12557a1SHong Zhang   PetscInt           cm = C->rmap->n;
1036718818eSStefano Zampini   Mat_APMPI         *ptap;
104c12557a1SHong Zhang   PetscInt          *api, *apj, *apJ, i, k;
10529825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
106598bc09dSHong Zhang   PetscInt           cdnz, conz, k0, k1;
107ce496241SStefano Zampini   const PetscScalar *dummy;
1089467f45fSHong Zhang   MPI_Comm           comm;
1099467f45fSHong Zhang   PetscMPIInt        size;
110598bc09dSHong Zhang 
111598bc09dSHong Zhang   PetscFunctionBegin;
1126718818eSStefano Zampini   MatCheckProduct(C, 3);
1136718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
11428b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1159566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
117aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11880da8df7SHong Zhang 
11965e4b4d4SStefano Zampini   /* flag CPU mask for C */
12065e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12165e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12465e4b4d4SStefano Zampini #endif
12565e4b4d4SStefano Zampini 
126a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
127598bc09dSHong Zhang   /*-----------------------------------------------------*/
128a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1299566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1309566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
131598bc09dSHong Zhang 
132598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
133598bc09dSHong Zhang   /*----------------------------------------------------------*/
134598bc09dSHong Zhang   /* get data from symbolic products */
135a1a4e84aSHong Zhang   p_loc = (Mat_SeqAIJ *)(ptap->P_loc)->data;
136c12557a1SHong Zhang   p_oth = NULL;
137ad540459SPierre Jolivet   if (size > 1) p_oth = (Mat_SeqAIJ *)(ptap->P_oth)->data;
138598bc09dSHong Zhang 
139598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
140598bc09dSHong Zhang   apa = ptap->apa;
141598bc09dSHong Zhang 
14229825010SHong Zhang   api = ptap->api;
14329825010SHong Zhang   apj = ptap->apj;
144ce496241SStefano Zampini   /* trigger copy to CPU */
1459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
1469566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
1479566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
1489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
149598bc09dSHong Zhang   for (i = 0; i < cm; i++) {
150c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
151e497d3c8SHong Zhang     AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
152598bc09dSHong Zhang 
153598bc09dSHong Zhang     /* set values in C */
154598bc09dSHong Zhang     apJ  = apj + api[i];
155598bc09dSHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
156598bc09dSHong Zhang     conz = co->i[i + 1] - co->i[i];
157598bc09dSHong Zhang 
158910cf402Sprj-     /* 1st off-diagonal part of C */
159598bc09dSHong Zhang     ca = coa + co->i[i];
160598bc09dSHong Zhang     k  = 0;
161598bc09dSHong Zhang     for (k0 = 0; k0 < conz; k0++) {
162598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
163598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1645cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
165598bc09dSHong Zhang     }
166598bc09dSHong Zhang 
167598bc09dSHong Zhang     /* diagonal part of C */
168598bc09dSHong Zhang     ca = cda + cd->i[i];
169598bc09dSHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
170598bc09dSHong Zhang       ca[k1]        = apa[apJ[k]];
1715cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
172598bc09dSHong Zhang     }
173598bc09dSHong Zhang 
174910cf402Sprj-     /* 2nd off-diagonal part of C */
175598bc09dSHong Zhang     ca = coa + co->i[i];
176598bc09dSHong Zhang     for (; k0 < conz; k0++) {
177598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1785cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
179598bc09dSHong Zhang     }
180598bc09dSHong Zhang   }
1819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
183598bc09dSHong Zhang   PetscFunctionReturn(0);
184598bc09dSHong Zhang }
185598bc09dSHong Zhang 
186d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C)
187d71ae5a4SJacob Faibussowitsch {
188ce94432eSBarry Smith   MPI_Comm           comm;
1899467f45fSHong Zhang   PetscMPIInt        size;
1903cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1910298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
1926718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
193bfcd1a73SHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth;
1947dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
1954ae0847bSHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
196d14fa243SHong Zhang   PetscInt          *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
1975cab4f04SHong Zhang   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
198598bc09dSHong Zhang   PetscBT            lnkbt;
199bfcd1a73SHong Zhang   PetscReal          afill;
200b92f168fSBarry Smith   MatType            mtype;
201598bc09dSHong Zhang 
202598bc09dSHong Zhang   PetscFunctionBegin;
2036718818eSStefano Zampini   MatCheckProduct(C, 4);
20428b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2059566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2069566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2079467f45fSHong Zhang 
2083cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
2099566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
210598bc09dSHong Zhang 
211598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2129566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
21319f0e57aSHong Zhang 
214598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2159566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
216598bc09dSHong Zhang 
217a1a4e84aSHong Zhang   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
2189371c9d4SSatish Balay   pi_loc = p_loc->i;
2199371c9d4SSatish Balay   pj_loc = p_loc->j;
2209467f45fSHong Zhang   if (size > 1) {
2219467f45fSHong Zhang     p_oth  = (Mat_SeqAIJ *)(ptap->P_oth)->data;
2229371c9d4SSatish Balay     pi_oth = p_oth->i;
2239371c9d4SSatish Balay     pj_oth = p_oth->j;
22420e3dc75SHong Zhang   } else {
22520e3dc75SHong Zhang     p_oth  = NULL;
2269371c9d4SSatish Balay     pi_oth = NULL;
2279371c9d4SSatish Balay     pj_oth = NULL;
2289467f45fSHong Zhang   }
229598bc09dSHong Zhang 
230598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
231598bc09dSHong Zhang   /*-------------------------------------------------------------------*/
2329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
233a1a4e84aSHong Zhang   ptap->api = api;
234598bc09dSHong Zhang   api[0]    = 0;
235598bc09dSHong Zhang 
2365cab4f04SHong Zhang   /* create and initialize a linked list */
2379566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
238598bc09dSHong Zhang 
239bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2409566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
241598bc09dSHong Zhang   current_space = free_space;
242598bc09dSHong Zhang 
243d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
244598bc09dSHong Zhang   for (i = 0; i < am; i++) {
245598bc09dSHong Zhang     /* diagonal portion of A */
246598bc09dSHong Zhang     nzi = adi[i + 1] - adi[i];
247598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
248598bc09dSHong Zhang       row  = *adj++;
249598bc09dSHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
250598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
251598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2529566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
253598bc09dSHong Zhang     }
254598bc09dSHong Zhang     /* off-diagonal portion of A */
255598bc09dSHong Zhang     nzi = aoi[i + 1] - aoi[i];
256598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
257598bc09dSHong Zhang       row  = *aoj++;
258598bc09dSHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
259598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2609566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
261598bc09dSHong Zhang     }
2628c78258cSHong Zhang     /* add possible missing diagonal entry */
2638c78258cSHong Zhang     if (C->force_diagonals) {
2648c78258cSHong Zhang       j = i + rstart; /* column index */
2659566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2668c78258cSHong Zhang     }
267598bc09dSHong Zhang 
268d14fa243SHong Zhang     apnz       = lnk[0];
269598bc09dSHong Zhang     api[i + 1] = api[i] + apnz;
270598bc09dSHong Zhang 
271598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
272598bc09dSHong Zhang     if (current_space->local_remaining < apnz) {
2739566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
274598bc09dSHong Zhang       nspacedouble++;
275598bc09dSHong Zhang     }
276598bc09dSHong Zhang 
277598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2789566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2799566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2802205254eSKarl Rupp 
281598bc09dSHong Zhang     current_space->array += apnz;
282598bc09dSHong Zhang     current_space->local_used += apnz;
283598bc09dSHong Zhang     current_space->local_remaining -= apnz;
284598bc09dSHong Zhang   }
285598bc09dSHong Zhang 
286598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
287598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
2889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj));
289a1a4e84aSHong Zhang   apj = ptap->apj;
2909566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2919566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
292598bc09dSHong Zhang 
293f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN, &ptap->apa));
295f84c536bSHong Zhang 
2964222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2974222ddf1SHong Zhang   /*---------------------------------------------*/
2989566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
2999566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
300a2f3521dSMark F. Adams 
3019566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
3029566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
3039566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
304d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
30517f75172Sandi selinger 
3069566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
3079566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3089566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3099566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
310598bc09dSHong Zhang 
3114222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3124222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
313598bc09dSHong Zhang 
3144222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3156718818eSStefano Zampini   C->product->data    = ptap;
3166718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
317598bc09dSHong Zhang 
318bfcd1a73SHong Zhang   /* set MatInfo */
319118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
320bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3214222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3224222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3234222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
324bfcd1a73SHong Zhang 
325bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
326bfcd1a73SHong Zhang   if (api[am]) {
3279566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3289566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
329bfcd1a73SHong Zhang   } else {
3309566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
331bfcd1a73SHong Zhang   }
332bfcd1a73SHong Zhang #endif
333598bc09dSHong Zhang   PetscFunctionReturn(0);
334598bc09dSHong Zhang }
335598bc09dSHong Zhang 
3364222ddf1SHong Zhang /* ------------------------------------------------------- */
3376718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3386718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3396718818eSStefano Zampini 
340d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
341d71ae5a4SJacob Faibussowitsch {
3424222ddf1SHong Zhang   Mat_Product *product = C->product;
3434222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3449123193aSHong Zhang 
3459123193aSHong Zhang   PetscFunctionBegin;
3464222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
34798921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3484222ddf1SHong Zhang 
3494222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3504222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3519123193aSHong Zhang   PetscFunctionReturn(0);
3529123193aSHong Zhang }
3534222ddf1SHong Zhang /* -------------------------------------------------------------------- */
354d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
355d71ae5a4SJacob Faibussowitsch {
3564222ddf1SHong Zhang   Mat_Product *product = C->product;
3574222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3584222ddf1SHong Zhang 
3594222ddf1SHong Zhang   PetscFunctionBegin;
3604222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
36198921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3624222ddf1SHong Zhang 
3634222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3644222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3654222ddf1SHong Zhang   PetscFunctionReturn(0);
3664222ddf1SHong Zhang }
3674222ddf1SHong Zhang 
3684222ddf1SHong Zhang /* --------------------------------------------------------------------- */
369d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
370d71ae5a4SJacob Faibussowitsch {
3714222ddf1SHong Zhang   Mat_Product *product = C->product;
3724222ddf1SHong Zhang 
3734222ddf1SHong Zhang   PetscFunctionBegin;
3744222ddf1SHong Zhang   switch (product->type) {
375d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
376d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
377d71ae5a4SJacob Faibussowitsch     break;
378d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
379d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
380d71ae5a4SJacob Faibussowitsch     break;
381d71ae5a4SJacob Faibussowitsch   default:
382d71ae5a4SJacob Faibussowitsch     break;
3834222ddf1SHong Zhang   }
3844222ddf1SHong Zhang   PetscFunctionReturn(0);
3854222ddf1SHong Zhang }
3864222ddf1SHong Zhang /* ------------------------------------------------------- */
3879123193aSHong Zhang 
3884324174eSBarry Smith typedef struct {
3895ea7661aSPierre Jolivet   Mat           workB, workB1;
3904324174eSBarry Smith   MPI_Request  *rwaits, *swaits;
39187753ddeSHong Zhang   PetscInt      nsends, nrecvs;
39287753ddeSHong Zhang   MPI_Datatype *stype, *rtype;
3936718818eSStefano Zampini   PetscInt      blda;
3944324174eSBarry Smith } MPIAIJ_MPIDense;
3954324174eSBarry Smith 
396d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
397d71ae5a4SJacob Faibussowitsch {
3984324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx;
39987753ddeSHong Zhang   PetscInt         i;
4004324174eSBarry Smith 
4014324174eSBarry Smith   PetscFunctionBegin;
4029566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
4039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
40448a46eb9SPierre Jolivet   for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
40548a46eb9SPierre Jolivet   for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
4069566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
4079566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4084324174eSBarry Smith   PetscFunctionReturn(0);
4094324174eSBarry Smith }
4104324174eSBarry Smith 
411d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
412d71ae5a4SJacob Faibussowitsch {
413f32d5d43SBarry Smith   Mat_MPIAIJ      *aij = (Mat_MPIAIJ *)A->data;
414b45e3bf4SStefano Zampini   PetscInt         nz  = aij->B->cmap->n, nsends, nrecvs, i, nrows_to, j, blda, m, M, n, N;
4154324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4164324174eSBarry Smith   VecScatter       ctx = aij->Mvctx;
4175ea7661aSPierre Jolivet   PetscInt         Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, nrows_from, numBb;
41887753ddeSHong Zhang   MPI_Comm         comm;
41987753ddeSHong Zhang   MPI_Datatype     type1, *stype, *rtype;
42087753ddeSHong Zhang   const PetscInt  *sindices, *sstarts, *rstarts;
42187753ddeSHong Zhang   PetscMPIInt     *disp;
4226718818eSStefano Zampini   PetscBool        cisdense;
4239123193aSHong Zhang 
4249123193aSHong Zhang   PetscFunctionBegin;
4256718818eSStefano Zampini   MatCheckProduct(C, 4);
42628b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4279566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4289566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
42948a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4309566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C, &m, &n));
4319566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C, &M, &N));
43248a46eb9SPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4339566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
4349566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4359566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
4369566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4374324174eSBarry Smith 
4389566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4399566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
44087753ddeSHong Zhang 
44187753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
44287753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
44387753ddeSHong Zhang   if (nz) {
44487753ddeSHong Zhang     Bbn1 = 2 * Am * BN / nz;
445da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
44687753ddeSHong Zhang   } else Bbn1 = BN;
44787753ddeSHong Zhang 
44887753ddeSHong Zhang   bs   = PetscAbs(B->cmap->bs);
44987753ddeSHong Zhang   Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
45087753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
4519566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
45287753ddeSHong Zhang 
45387753ddeSHong Zhang   /* Enable runtime option for Bbn */
454d0609cedSBarry Smith   PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat");
4559566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL));
456d0609cedSBarry Smith   PetscOptionsEnd();
4576718818eSStefano Zampini   Bbn = PetscMin(Bbn, BN);
45887753ddeSHong Zhang 
4596718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4605ea7661aSPierre Jolivet     numBb = BN / Bbn;
4615ea7661aSPierre Jolivet     Bbn1  = BN - numBb * Bbn;
4625ea7661aSPierre Jolivet   } else numBb = 0;
46387753ddeSHong Zhang 
4645ea7661aSPierre Jolivet   if (numBb) {
4659566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4665ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4679566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
46887753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4699566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4705ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
47187753ddeSHong Zhang   }
47287753ddeSHong Zhang 
47387753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4749566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
47587753ddeSHong Zhang 
47687753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
47887753ddeSHong Zhang   contents->stype  = stype;
47987753ddeSHong Zhang   contents->nsends = nsends;
48087753ddeSHong Zhang 
48187753ddeSHong Zhang   contents->rtype  = rtype;
48287753ddeSHong Zhang   contents->nrecvs = nrecvs;
4836718818eSStefano Zampini   contents->blda   = blda;
48487753ddeSHong Zhang 
4859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm + 1, &disp));
48687753ddeSHong Zhang   for (i = 0; i < nsends; i++) {
48787753ddeSHong Zhang     nrows_to = sstarts[i + 1] - sstarts[i];
488b45e3bf4SStefano Zampini     for (j = 0; j < nrows_to; j++) disp[j] = sindices[sstarts[i] + j]; /* rowB to be sent */
4899566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4909566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4919566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
49387753ddeSHong Zhang   }
49487753ddeSHong Zhang 
49587753ddeSHong Zhang   for (i = 0; i < nrecvs; i++) {
49687753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
49787753ddeSHong Zhang     nrows_from = rstarts[i + 1] - rstarts[i];
49887753ddeSHong Zhang     disp[0]    = 0;
4999566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
5009566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
5019566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
5029566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
50387753ddeSHong Zhang   }
50487753ddeSHong Zhang 
5059566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
5069566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
5079566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
5089566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
5099566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
5109566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
5119566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
5126718818eSStefano Zampini 
5136718818eSStefano Zampini   C->product->data       = contents;
5146718818eSStefano Zampini   C->product->destroy    = MatMPIAIJ_MPIDenseDestroy;
5154222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5169123193aSHong Zhang   PetscFunctionReturn(0);
5179123193aSHong Zhang }
5189123193aSHong Zhang 
51993aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
5209612af27SStefano Zampini 
521f32d5d43SBarry Smith /*
5222636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5232636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
52487753ddeSHong Zhang 
5259612af27SStefano Zampini     Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
526f32d5d43SBarry Smith */
5279612af27SStefano Zampini 
528d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB)
529d71ae5a4SJacob Faibussowitsch {
530f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
5311683a169SBarry Smith   const PetscScalar *b;
53287753ddeSHong Zhang   PetscScalar       *rvalues;
533f32d5d43SBarry Smith   VecScatter         ctx = aij->Mvctx;
53487753ddeSHong Zhang   const PetscInt    *sindices, *sstarts, *rstarts;
5353515ee7fSJunchao Zhang   const PetscMPIInt *sprocs, *rprocs;
5366718818eSStefano Zampini   PetscInt           i, nsends, nrecvs;
537f32d5d43SBarry Smith   MPI_Request       *swaits, *rwaits;
538ce94432eSBarry Smith   MPI_Comm           comm;
5396718818eSStefano Zampini   PetscMPIInt        tag = ((PetscObject)ctx)->tag, ncols = B->cmap->N, nrows = aij->B->cmap->n, nsends_mpi, nrecvs_mpi;
5404324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5414324174eSBarry Smith   Mat                workB;
54287753ddeSHong Zhang   MPI_Datatype      *stype, *rtype;
5436718818eSStefano Zampini   PetscInt           blda;
544f32d5d43SBarry Smith 
545f32d5d43SBarry Smith   PetscFunctionBegin;
5466718818eSStefano Zampini   MatCheckProduct(C, 4);
54728b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5486718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
5499566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5509566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5519566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5529566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
553b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
554b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
55508401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5563515ee7fSJunchao Zhang   swaits = contents->swaits;
5573515ee7fSJunchao Zhang   rwaits = contents->rwaits;
558f32d5d43SBarry Smith 
5599566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &b));
5609566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
56108401ef6SPierre Jolivet   PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5629566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB, &rvalues));
563f32d5d43SBarry Smith 
56487753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5659566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
56687753ddeSHong Zhang   rtype = contents->rtype;
56748a46eb9SPierre Jolivet   for (i = 0; i < nrecvs; i++) PetscCallMPI(MPI_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
568f32d5d43SBarry Smith 
56987753ddeSHong Zhang   stype = contents->stype;
57048a46eb9SPierre Jolivet   for (i = 0; i < nsends; i++) PetscCallMPI(MPI_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5712636ff26SBarry Smith 
5729566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5739566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
574f32d5d43SBarry Smith 
5759566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5769566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5779566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &b));
5789566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB, &rvalues));
57987753ddeSHong Zhang   PetscFunctionReturn(0);
58087753ddeSHong Zhang }
581f32d5d43SBarry Smith 
582d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C)
583d71ae5a4SJacob Faibussowitsch {
584f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ *)A->data;
585f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense *)B->data;
586f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense *)C->data;
587f32d5d43SBarry Smith   Mat              workB;
58887753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5899123193aSHong Zhang 
5909123193aSHong Zhang   PetscFunctionBegin;
5916718818eSStefano Zampini   MatCheckProduct(C, 3);
59228b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5936718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
594f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5955ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
5969566063dSJacob Faibussowitsch   PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_DEFAULT, &cdense->A));
5975ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
59887753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
5999566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
600f32d5d43SBarry Smith 
601f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
6029566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
60387753ddeSHong Zhang   } else {
6045ea7661aSPierre Jolivet     Mat       Bb, Cb;
6055ea7661aSPierre Jolivet     PetscInt  BN = B->cmap->N, n = contents->workB->cmap->n, i;
606664c1e85SStefano Zampini     PetscBool ccpu;
60787753ddeSHong Zhang 
60808401ef6SPierre Jolivet     PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
609664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
610664c1e85SStefano Zampini        when getting and restoring the submatrix
611664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6129566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C, &ccpu));
6139566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, PETSC_TRUE));
6145ea7661aSPierre Jolivet     for (i = 0; i < BN; i += n) {
615a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
616a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
61787753ddeSHong Zhang 
6185ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6199566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6205ea7661aSPierre Jolivet 
6215ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6225ea7661aSPierre Jolivet       cdense = (Mat_MPIDense *)Cb->data;
6239566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6249566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6259566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
62687753ddeSHong Zhang     }
6279566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, ccpu));
62887753ddeSHong Zhang   }
6299123193aSHong Zhang   PetscFunctionReturn(0);
6309123193aSHong Zhang }
631cf1a0672SHong Zhang 
632d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C)
633d71ae5a4SJacob Faibussowitsch {
634cf1a0672SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
635cf1a0672SHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data;
636cf1a0672SHong Zhang   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)(c->A)->data, *co = (Mat_SeqAIJ *)(c->B)->data;
637cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj, *aoi = ao->i, *aoj;
638cf1a0672SHong Zhang   PetscScalar       *ada, *aoa, *cda = cd->a, *coa = co->a;
639cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
640cf1a0672SHong Zhang   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
64129825010SHong Zhang   PetscScalar       *pa_loc, *pa_oth, *pa, valtmp, *ca;
64229825010SHong Zhang   PetscInt           cm = C->rmap->n, anz, pnz;
6436718818eSStefano Zampini   Mat_APMPI         *ptap;
64480da8df7SHong Zhang   PetscScalar       *apa_sparse;
645ce496241SStefano Zampini   const PetscScalar *dummy;
646cf1a0672SHong Zhang   PetscInt          *api, *apj, *apJ, i, j, k, row;
64729825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
64829825010SHong Zhang   PetscInt           cdnz, conz, k0, k1, nextp;
649a7c7454dSHong Zhang   MPI_Comm           comm;
650a7c7454dSHong Zhang   PetscMPIInt        size;
6511634b032SHong Zhang 
6521634b032SHong Zhang   PetscFunctionBegin;
6536718818eSStefano Zampini   MatCheckProduct(C, 3);
6546718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
65528b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6569566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
658aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
659a7c7454dSHong Zhang 
66065e4b4d4SStefano Zampini   /* flag CPU mask for C */
66165e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
66265e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
66365e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
66465e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
66565e4b4d4SStefano Zampini #endif
66680da8df7SHong Zhang   apa_sparse = ptap->apa;
66780da8df7SHong Zhang 
668cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
669cf1a0672SHong Zhang   /*-----------------------------------------------------*/
670cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6719566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6729566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
673cf1a0672SHong Zhang 
674cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
675cf1a0672SHong Zhang   /*----------------------------------------------------------*/
676cf1a0672SHong Zhang   /* get data from symbolic products */
677cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
6789371c9d4SSatish Balay   pi_loc = p_loc->i;
6799371c9d4SSatish Balay   pj_loc = p_loc->j;
6809371c9d4SSatish Balay   pa_loc = p_loc->a;
681a7c7454dSHong Zhang   if (size > 1) {
682a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ *)(ptap->P_oth)->data;
6839371c9d4SSatish Balay     pi_oth = p_oth->i;
6849371c9d4SSatish Balay     pj_oth = p_oth->j;
6859371c9d4SSatish Balay     pa_oth = p_oth->a;
68620e3dc75SHong Zhang   } else {
6879371c9d4SSatish Balay     p_oth  = NULL;
6889371c9d4SSatish Balay     pi_oth = NULL;
6899371c9d4SSatish Balay     pj_oth = NULL;
6909371c9d4SSatish Balay     pa_oth = NULL;
691a7c7454dSHong Zhang   }
692cf1a0672SHong Zhang 
693ce496241SStefano Zampini   /* trigger copy to CPU */
6949566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
6959566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
6969566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
6979566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
69829825010SHong Zhang   api = ptap->api;
69929825010SHong Zhang   apj = ptap->apj;
700cf1a0672SHong Zhang   for (i = 0; i < cm; i++) {
70129825010SHong Zhang     apJ = apj + api[i];
70229825010SHong Zhang 
703cf1a0672SHong Zhang     /* diagonal portion of A */
704cf1a0672SHong Zhang     anz = adi[i + 1] - adi[i];
705cf1a0672SHong Zhang     adj = ad->j + adi[i];
706cf1a0672SHong Zhang     ada = ad->a + adi[i];
707cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
708cf1a0672SHong Zhang       row = adj[j];
709cf1a0672SHong Zhang       pnz = pi_loc[row + 1] - pi_loc[row];
710cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
711cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
71229825010SHong Zhang       /* perform sparse axpy */
713cf1a0672SHong Zhang       valtmp = ada[j];
71429825010SHong Zhang       nextp  = 0;
71529825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
71629825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
71729825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
71829825010SHong Zhang         }
7191634b032SHong Zhang       }
7209566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
721cf1a0672SHong Zhang     }
7221634b032SHong Zhang 
723cf1a0672SHong Zhang     /* off-diagonal portion of A */
724cf1a0672SHong Zhang     anz = aoi[i + 1] - aoi[i];
725cf1a0672SHong Zhang     aoj = ao->j + aoi[i];
726cf1a0672SHong Zhang     aoa = ao->a + aoi[i];
727cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
728cf1a0672SHong Zhang       row = aoj[j];
729cf1a0672SHong Zhang       pnz = pi_oth[row + 1] - pi_oth[row];
730cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
731cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
73229825010SHong Zhang       /* perform sparse axpy */
733cf1a0672SHong Zhang       valtmp = aoa[j];
73429825010SHong Zhang       nextp  = 0;
73529825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
73629825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
73729825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
73829825010SHong Zhang         }
739cf1a0672SHong Zhang       }
7409566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
741cf1a0672SHong Zhang     }
7421634b032SHong Zhang 
743cf1a0672SHong Zhang     /* set values in C */
744cf1a0672SHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
745cf1a0672SHong Zhang     conz = co->i[i + 1] - co->i[i];
7461634b032SHong Zhang 
747910cf402Sprj-     /* 1st off-diagonal part of C */
748cf1a0672SHong Zhang     ca = coa + co->i[i];
749cf1a0672SHong Zhang     k  = 0;
750cf1a0672SHong Zhang     for (k0 = 0; k0 < conz; k0++) {
751cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
75229825010SHong Zhang       ca[k0]        = apa_sparse[k];
75329825010SHong Zhang       apa_sparse[k] = 0.0;
754cf1a0672SHong Zhang       k++;
755cf1a0672SHong Zhang     }
7561634b032SHong Zhang 
757cf1a0672SHong Zhang     /* diagonal part of C */
758cf1a0672SHong Zhang     ca = cda + cd->i[i];
759cf1a0672SHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
76029825010SHong Zhang       ca[k1]        = apa_sparse[k];
76129825010SHong Zhang       apa_sparse[k] = 0.0;
762cf1a0672SHong Zhang       k++;
763cf1a0672SHong Zhang     }
764cf1a0672SHong Zhang 
765910cf402Sprj-     /* 2nd off-diagonal part of C */
766cf1a0672SHong Zhang     ca = coa + co->i[i];
767cf1a0672SHong Zhang     for (; k0 < conz; k0++) {
76829825010SHong Zhang       ca[k0]        = apa_sparse[k];
76929825010SHong Zhang       apa_sparse[k] = 0.0;
770cf1a0672SHong Zhang       k++;
771cf1a0672SHong Zhang     }
772cf1a0672SHong Zhang   }
7739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
775cf1a0672SHong Zhang   PetscFunctionReturn(0);
776cf1a0672SHong Zhang }
777cf1a0672SHong Zhang 
7780fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
779d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C)
780d71ae5a4SJacob Faibussowitsch {
781ce94432eSBarry Smith   MPI_Comm           comm;
782a7c7454dSHong Zhang   PetscMPIInt        size;
7833cdca5ebSHong Zhang   Mat_APMPI         *ptap;
7840298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
7856718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
786cf1a0672SHong Zhang   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc, *p_oth;
7877dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
788cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
7898c78258cSHong Zhang   PetscInt           i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
790e5ab8c0aSKarl Rupp   PetscInt           am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
791cf1a0672SHong Zhang   PetscReal          afill;
792b92f168fSBarry Smith   MatType            mtype;
793cf1a0672SHong Zhang 
794cf1a0672SHong Zhang   PetscFunctionBegin;
7956718818eSStefano Zampini   MatCheckProduct(C, 4);
79628b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
7979566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
7989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
799a7c7454dSHong Zhang 
8003cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
8019566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
802cf1a0672SHong Zhang 
803cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
8049566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
80519f0e57aSHong Zhang 
806cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
8079566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
808cf1a0672SHong Zhang 
809cf1a0672SHong Zhang   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
8109371c9d4SSatish Balay   pi_loc = p_loc->i;
8119371c9d4SSatish Balay   pj_loc = p_loc->j;
812a7c7454dSHong Zhang   if (size > 1) {
813a7c7454dSHong Zhang     p_oth  = (Mat_SeqAIJ *)(ptap->P_oth)->data;
8149371c9d4SSatish Balay     pi_oth = p_oth->i;
8159371c9d4SSatish Balay     pj_oth = p_oth->j;
816968382fdSHong Zhang   } else {
81720e3dc75SHong Zhang     p_oth  = NULL;
8189371c9d4SSatish Balay     pi_oth = NULL;
8199371c9d4SSatish Balay     pj_oth = NULL;
820a7c7454dSHong Zhang   }
821cf1a0672SHong Zhang 
822cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
823cf1a0672SHong Zhang   /*-------------------------------------------------------------------*/
8249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
825cf1a0672SHong Zhang   ptap->api = api;
826cf1a0672SHong Zhang   api[0]    = 0;
827cf1a0672SHong Zhang 
8289566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
829cf1a0672SHong Zhang 
830cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8319566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
832cf1a0672SHong Zhang   current_space = free_space;
833d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
834cf1a0672SHong Zhang   for (i = 0; i < am; i++) {
835cf1a0672SHong Zhang     /* diagonal portion of A */
836cf1a0672SHong Zhang     nzi = adi[i + 1] - adi[i];
837cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
838cf1a0672SHong Zhang       row  = *adj++;
839cf1a0672SHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
840cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8418a210135Sandi selinger       /* Expand list if it is not long enough */
8428328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8438328dd82Sandi selinger         lsize = pnz + apnz_max;
8449566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8458a210135Sandi selinger       }
846cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8479566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8488a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8498a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8508c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
851cf1a0672SHong Zhang     }
852cf1a0672SHong Zhang     /* off-diagonal portion of A */
853cf1a0672SHong Zhang     nzi = aoi[i + 1] - aoi[i];
854cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
855cf1a0672SHong Zhang       row  = *aoj++;
856cf1a0672SHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
857cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8588a210135Sandi selinger       /* Expand list if it is not long enough */
8598328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8608328dd82Sandi selinger         lsize = pnz + apnz_max;
8619566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8628a210135Sandi selinger       }
8638a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8649566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8658a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8668a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8678c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
868cf1a0672SHong Zhang     }
8698c78258cSHong Zhang 
8708c78258cSHong Zhang     /* add missing diagonal entry */
8718c78258cSHong Zhang     if (C->force_diagonals) {
8728c78258cSHong Zhang       j = i + rstart; /* column index */
8739566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8748c78258cSHong Zhang     }
8758c78258cSHong Zhang 
876f84c536bSHong Zhang     apnz       = *lnk;
877cf1a0672SHong Zhang     api[i + 1] = api[i] + apnz;
8788a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
879cf1a0672SHong Zhang 
880cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
881cf1a0672SHong Zhang     if (current_space->local_remaining < apnz) {
8829566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
883cf1a0672SHong Zhang       nspacedouble++;
884cf1a0672SHong Zhang     }
885cf1a0672SHong Zhang 
886cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8879566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
8889566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
8892205254eSKarl Rupp 
890cf1a0672SHong Zhang     current_space->array += apnz;
891cf1a0672SHong Zhang     current_space->local_used += apnz;
892cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
893cf1a0672SHong Zhang   }
894cf1a0672SHong Zhang 
895cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
896cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
8979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj));
898cf1a0672SHong Zhang   apj = ptap->apj;
8999566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
9009566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
901cf1a0672SHong Zhang 
9024222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
903cf1a0672SHong Zhang   /*----------------------------------------------------*/
9049566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
9059566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
9069566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
9079566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
9089566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
909d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
910cf1a0672SHong Zhang 
9114222ddf1SHong Zhang   /* malloc apa for assembly C */
9129566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
91317f75172Sandi selinger 
9149566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
9159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
9169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
9179566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
918cf1a0672SHong Zhang 
9194222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9204222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
921cf1a0672SHong Zhang 
9224222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9236718818eSStefano Zampini   C->product->data    = ptap;
9246718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
925cf1a0672SHong Zhang 
926cf1a0672SHong Zhang   /* set MatInfo */
927118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
928cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9294222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9304222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9314222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
932cf1a0672SHong Zhang 
933cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
934cf1a0672SHong Zhang   if (api[am]) {
9359566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9369566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
937cf1a0672SHong Zhang   } else {
9389566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
939cf1a0672SHong Zhang   }
940cf1a0672SHong Zhang #endif
9411634b032SHong Zhang   PetscFunctionReturn(0);
9421634b032SHong Zhang }
943f96d37fcSHong Zhang 
944a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
945a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
946a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
947d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out)
948d71ae5a4SJacob Faibussowitsch {
949a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
950a9d7e0ccSandi selinger 
951a9d7e0ccSandi selinger   /* Traverse all three arrays */
952a9d7e0ccSandi selinger   while (i < size1 && j < size2 && k < size3) {
953a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
954a9d7e0ccSandi selinger       out[l++] = in1[i++];
9559371c9d4SSatish Balay     } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
956a9d7e0ccSandi selinger       out[l++] = in2[j++];
9579371c9d4SSatish Balay     } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
958a9d7e0ccSandi selinger       out[l++] = in3[k++];
9599371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
960a9d7e0ccSandi selinger       out[l++] = in1[i];
961a9d7e0ccSandi selinger       i++, j++;
9629371c9d4SSatish Balay     } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
963a9d7e0ccSandi selinger       out[l++] = in1[i];
964a9d7e0ccSandi selinger       i++, k++;
9659371c9d4SSatish Balay     } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
966a9d7e0ccSandi selinger       out[l++] = in2[j];
967a9d7e0ccSandi selinger       k++, j++;
9689371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
969a9d7e0ccSandi selinger       out[l++] = in1[i];
970a9d7e0ccSandi selinger       i++, j++, k++;
971a9d7e0ccSandi selinger     }
972a9d7e0ccSandi selinger   }
973a9d7e0ccSandi selinger 
974a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
975a9d7e0ccSandi selinger   while (i < size1 && j < size2) {
976a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
977a9d7e0ccSandi selinger       out[l++] = in1[i++];
9789371c9d4SSatish Balay     } else if (in1[i] > in2[j]) {
979a9d7e0ccSandi selinger       out[l++] = in2[j++];
9809371c9d4SSatish Balay     } else {
981a9d7e0ccSandi selinger       out[l++] = in1[i];
982a9d7e0ccSandi selinger       i++, j++;
983a9d7e0ccSandi selinger     }
984a9d7e0ccSandi selinger   }
985a9d7e0ccSandi selinger 
986a9d7e0ccSandi selinger   while (i < size1 && k < size3) {
987a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
988a9d7e0ccSandi selinger       out[l++] = in1[i++];
9899371c9d4SSatish Balay     } else if (in1[i] > in3[k]) {
990a9d7e0ccSandi selinger       out[l++] = in3[k++];
9919371c9d4SSatish Balay     } else {
992a9d7e0ccSandi selinger       out[l++] = in1[i];
993a9d7e0ccSandi selinger       i++, k++;
994a9d7e0ccSandi selinger     }
995a9d7e0ccSandi selinger   }
996a9d7e0ccSandi selinger 
997a9d7e0ccSandi selinger   while (k < size3 && j < size2) {
998a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
999a9d7e0ccSandi selinger       out[l++] = in3[k++];
10009371c9d4SSatish Balay     } else if (in3[k] > in2[j]) {
1001a9d7e0ccSandi selinger       out[l++] = in2[j++];
10029371c9d4SSatish Balay     } else {
1003a9d7e0ccSandi selinger       out[l++] = in3[k];
1004a9d7e0ccSandi selinger       k++, j++;
1005a9d7e0ccSandi selinger     }
1006a9d7e0ccSandi selinger   }
1007a9d7e0ccSandi selinger 
1008a9d7e0ccSandi selinger   /* Traverse one remaining array */
1009a9d7e0ccSandi selinger   while (i < size1) out[l++] = in1[i++];
1010a9d7e0ccSandi selinger   while (j < size2) out[l++] = in2[j++];
1011a9d7e0ccSandi selinger   while (k < size3) out[l++] = in3[k++];
1012a9d7e0ccSandi selinger 
1013a9d7e0ccSandi selinger   *size4 = l;
1014a9d7e0ccSandi selinger }
1015a9d7e0ccSandi selinger 
101673b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
101773b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
101873b67375Sandi selinger /* matrix-matrix multiplications.  */
1019d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1020d71ae5a4SJacob Faibussowitsch {
1021a9d7e0ccSandi selinger   MPI_Comm           comm;
1022a9d7e0ccSandi selinger   PetscMPIInt        size;
10233cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1024a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag = NULL, current_space = NULL;
1025a9d7e0ccSandi selinger   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
1026a9d7e0ccSandi selinger   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)(a->A)->data, *ao = (Mat_SeqAIJ *)(a->B)->data, *p_loc;
1027a9d7e0ccSandi selinger   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1028a9d7e0ccSandi selinger   Mat_SeqAIJ        *adpd_seq, *p_off, *aopoth_seq;
1029a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10307dbaa2c6Sandi selinger   PetscInt          *pi_loc, *dnz, *onz;
1031a9d7e0ccSandi selinger   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10329371c9d4SSatish Balay   PetscInt          *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1033a016958eSandi selinger   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1034a9d7e0ccSandi selinger   PetscBT            lnkbt;
1035a9d7e0ccSandi selinger   PetscReal          afill;
1036a9d7e0ccSandi selinger   PetscMPIInt        rank;
1037a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1038b92f168fSBarry Smith   MatType            mtype;
1039e83e5f86SFande Kong   const char        *prefix;
1040a9d7e0ccSandi selinger 
1041a9d7e0ccSandi selinger   PetscFunctionBegin;
10426718818eSStefano Zampini   MatCheckProduct(C, 4);
104328b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10449566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10459566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
10469566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10479566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1048a9d7e0ccSandi selinger 
10493cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
10509566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1051a9d7e0ccSandi selinger 
1052a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10539566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1054a9d7e0ccSandi selinger 
1055a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10569566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1057a9d7e0ccSandi selinger 
1058a9d7e0ccSandi selinger   p_loc  = (Mat_SeqAIJ *)(ptap->P_loc)->data;
1059a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1060a9d7e0ccSandi selinger 
1061a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
10629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
10639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &adpoi));
1064a9d7e0ccSandi selinger 
1065a9d7e0ccSandi selinger   adpoi[0]  = 0;
1066a9d7e0ccSandi selinger   ptap->api = api;
1067a9d7e0ccSandi selinger   api[0]    = 0;
1068a9d7e0ccSandi selinger 
1069a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10709566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1071d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
1072a9d7e0ccSandi selinger 
1073a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10749566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10759566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10769566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10779566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd, prefix));
10789566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10794222ddf1SHong Zhang 
10809566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
10819566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
10829566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd, fill));
10839566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10848c78258cSHong Zhang 
10858c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10869566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10874222ddf1SHong Zhang 
1088a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
10899371c9d4SSatish Balay   adpdi    = adpd_seq->i;
10909371c9d4SSatish Balay   adpdj    = adpd_seq->j;
1091a9d7e0ccSandi selinger   p_off    = (Mat_SeqAIJ *)((p->B)->data);
10929371c9d4SSatish Balay   poff_i   = p_off->i;
10939371c9d4SSatish Balay   poff_j   = p_off->j;
1094a9d7e0ccSandi selinger 
109573b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
10969566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pN + 2, &j_temp));
1097a9d7e0ccSandi selinger 
1098a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1099a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
11009566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1101a9d7e0ccSandi selinger   current_space = free_space_diag;
1102a9d7e0ccSandi selinger 
1103a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1104a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1105a9d7e0ccSandi selinger     nzi = adi[i + 1] - adi[i];
1106a9d7e0ccSandi selinger     for (j = 0; j < nzi; j++) {
1107a9d7e0ccSandi selinger       row  = *adj++;
1108a9d7e0ccSandi selinger       pnz  = poff_i[row + 1] - poff_i[row];
1109a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1110ad540459SPierre Jolivet       for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]];
1111a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
11129566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1113a9d7e0ccSandi selinger     }
1114a9d7e0ccSandi selinger 
1115a9d7e0ccSandi selinger     adponz       = lnk[0];
1116a9d7e0ccSandi selinger     adpoi[i + 1] = adpoi[i] + adponz;
1117a9d7e0ccSandi selinger 
1118a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1119a9d7e0ccSandi selinger     if (current_space->local_remaining < adponz) {
11209566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), &current_space));
1121a9d7e0ccSandi selinger       nspacedouble++;
1122a9d7e0ccSandi selinger     }
1123a9d7e0ccSandi selinger 
1124a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11259566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1126a9d7e0ccSandi selinger 
1127a9d7e0ccSandi selinger     current_space->array += adponz;
1128a9d7e0ccSandi selinger     current_space->local_used += adponz;
1129a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1130a9d7e0ccSandi selinger   }
1131a9d7e0ccSandi selinger 
1132a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11339566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B, prefix));
11349566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11359566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11369566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1137a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11389371c9d4SSatish Balay   aopothi    = aopoth_seq->i;
11399371c9d4SSatish Balay   aopothj    = aopoth_seq->j;
1140a9d7e0ccSandi selinger 
1141a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1142a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1143a9d7e0ccSandi selinger 
11449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am] + 2, &ptap->apj));
11459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(adpoi[am] + 2, &adpoj));
1146a9d7e0ccSandi selinger 
1147a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11489566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11499566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
1150a9d7e0ccSandi selinger 
1151a9d7e0ccSandi selinger   adpoJ = adpoj;
1152a9d7e0ccSandi selinger   adpdJ = adpdj;
1153a9d7e0ccSandi selinger   aopJ  = aopothj;
1154a9d7e0ccSandi selinger   apj   = ptap->apj;
1155a9d7e0ccSandi selinger   apJ   = apj; /* still empty */
1156a9d7e0ccSandi selinger 
1157a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1158a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1159a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1160a9d7e0ccSandi selinger     aopnz  = aopothi[i + 1] - aopothi[i];
1161a9d7e0ccSandi selinger     adponz = adpoi[i + 1] - adpoi[i];
1162a9d7e0ccSandi selinger     adpdnz = adpdi[i + 1] - adpdi[i];
1163a9d7e0ccSandi selinger 
1164a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1165ad540459SPierre Jolivet     for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart;
1166a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1167a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11689566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1169a9d7e0ccSandi selinger 
1170a9d7e0ccSandi selinger     aopJ += aopnz;
1171a9d7e0ccSandi selinger     adpoJ += adponz;
1172a9d7e0ccSandi selinger     adpdJ += adpdnz;
1173a9d7e0ccSandi selinger     apJ += apnz;
1174a9d7e0ccSandi selinger     api[i + 1] = api[i] + apnz;
1175a9d7e0ccSandi selinger   }
1176a9d7e0ccSandi selinger 
1177a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
11789566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN + 2, &ptap->apa));
1179a9d7e0ccSandi selinger 
11804222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11819566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
11829566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
11839566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
11849566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
11859566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1186d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
118717f75172Sandi selinger 
11889566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
11899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
11909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
11919566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
119217f75172Sandi selinger 
11934222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11944222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1195a9d7e0ccSandi selinger 
11964222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11976718818eSStefano Zampini   C->product->data    = ptap;
11986718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1199a9d7e0ccSandi selinger 
1200a9d7e0ccSandi selinger   /* set MatInfo */
120173b67375Sandi selinger   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
120273b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
12034222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
12044222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
12054222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1206a9d7e0ccSandi selinger 
1207a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1208a9d7e0ccSandi selinger   if (api[am]) {
12099566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
12109566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1211a9d7e0ccSandi selinger   } else {
12129566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1213a9d7e0ccSandi selinger   }
1214a9d7e0ccSandi selinger #endif
1215a9d7e0ccSandi selinger 
12169566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12179566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12189566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12199566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12209566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
1221a9d7e0ccSandi selinger   PetscFunctionReturn(0);
1222a9d7e0ccSandi selinger }
1223a9d7e0ccSandi selinger 
1224f96d37fcSHong Zhang /*-------------------------------------------------------------------------*/
1225c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1226d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C)
1227d71ae5a4SJacob Faibussowitsch {
12286718818eSStefano Zampini   Mat_APMPI *ptap;
122960552ceaSHong Zhang   Mat        Pt;
1230c216dbf3SHong Zhang 
1231c216dbf3SHong Zhang   PetscFunctionBegin;
12326718818eSStefano Zampini   MatCheckProduct(C, 3);
12336718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
123428b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
123528b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
123660552ceaSHong Zhang 
123760552ceaSHong Zhang   Pt = ptap->Pt;
12381cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(P, Pt));
12399566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12409566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
1241f96d37fcSHong Zhang   PetscFunctionReturn(0);
1242f96d37fcSHong Zhang }
1243f96d37fcSHong Zhang 
1244c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
1245d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C)
1246d71ae5a4SJacob Faibussowitsch {
12473cdca5ebSHong Zhang   Mat_APMPI               *ptap;
12486718818eSStefano Zampini   Mat_MPIAIJ              *p = (Mat_MPIAIJ *)P->data;
1249912837bbSHong Zhang   MPI_Comm                 comm;
1250912837bbSHong Zhang   PetscMPIInt              size, rank;
1251912837bbSHong Zhang   PetscFreeSpaceList       free_space = NULL, current_space = NULL;
12524ede91e3SHong Zhang   PetscInt                 pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
125369be949aSStefano Zampini   PetscInt                *lnk, i, k, nsend, rstart;
1254912837bbSHong Zhang   PetscBT                  lnkbt;
1255ec4bef21SJose E. Roman   PetscMPIInt              tagi, tagj, *len_si, *len_s, *len_ri, nrecv;
1256ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted = 0;
12578c78258cSHong Zhang   PetscInt               **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12587f3e1f30SHong Zhang   PetscInt                 len, proc, *dnz, *onz, *owners, nzi;
1259912837bbSHong Zhang   PetscInt                 nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1260912837bbSHong Zhang   MPI_Request             *swaits, *rwaits;
1261912837bbSHong Zhang   MPI_Status              *sstatus, rstatus;
1262912837bbSHong Zhang   PetscLayout              rowmap;
1263912837bbSHong Zhang   PetscInt                *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1264912837bbSHong Zhang   PetscMPIInt             *len_r, *id_r;          /* array of length of comm->size, store send/recv matrix values */
12657f3e1f30SHong Zhang   PetscInt                *Jptr, *prmap = p->garray, con, j, Crmax;
12664ede91e3SHong Zhang   Mat_SeqAIJ              *a_loc, *c_loc, *c_oth;
1267*eec179cfSJacob Faibussowitsch   PetscHMapI               ta;
1268b92f168fSBarry Smith   MatType                  mtype;
1269e83e5f86SFande Kong   const char              *prefix;
1270912837bbSHong Zhang 
1271912837bbSHong Zhang   PetscFunctionBegin;
12729566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12739566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
12749566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1275912837bbSHong Zhang 
12764222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12779566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
12789566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
1279912837bbSHong Zhang 
12804222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1281912837bbSHong Zhang 
12823cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
12839566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1284912837bbSHong Zhang 
1285912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1286912837bbSHong Zhang   /* --------------------------------- */
1287acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1288acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1289912837bbSHong Zhang 
1290669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
1291669e9c86SHong Zhang   /* ---------------------------*/
12929566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1293912837bbSHong Zhang 
12944ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
1295912837bbSHong Zhang   /* ------------------------------------ */
12969566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
12979566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
12989566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
12999566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
13009566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1301912837bbSHong Zhang 
1302912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1303912837bbSHong Zhang   /* ------------------------------------------ */
1304912837bbSHong Zhang   /* determine row ownership */
13059566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &rowmap));
1306912837bbSHong Zhang   rowmap->n  = pn;
1307912837bbSHong Zhang   rowmap->bs = 1;
13089566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1309912837bbSHong Zhang   owners = rowmap->range;
1310912837bbSHong Zhang 
1311912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
13129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 2, &owners_co));
13139566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s, size));
13149566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si, size));
1315912837bbSHong Zhang 
1316912837bbSHong Zhang   c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
13179371c9d4SSatish Balay   coi   = c_oth->i;
13189371c9d4SSatish Balay   coj   = c_oth->j;
1319912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1320912837bbSHong Zhang   proc  = 0;
1321912837bbSHong Zhang   for (i = 0; i < con; i++) {
1322912837bbSHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
13237f3e1f30SHong Zhang     len_si[proc]++;                     /* num of rows in Co(=Pt*A) to be sent to [proc] */
1324912837bbSHong Zhang     len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1325912837bbSHong Zhang   }
1326912837bbSHong Zhang 
1327912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1328912837bbSHong Zhang   owners_co[0] = 0;
1329912837bbSHong Zhang   nsend        = 0;
1330912837bbSHong Zhang   for (proc = 0; proc < size; proc++) {
1331912837bbSHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1332912837bbSHong Zhang     if (len_s[proc]) {
1333912837bbSHong Zhang       nsend++;
1334912837bbSHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1335912837bbSHong Zhang       len += len_si[proc];
1336912837bbSHong Zhang     }
1337912837bbSHong Zhang   }
1338912837bbSHong Zhang 
1339912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13409566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13419566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1342912837bbSHong Zhang 
1343912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13449566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
13459566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
13469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend + 1, &swaits));
1347912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1348912837bbSHong Zhang     if (!len_s[proc]) continue;
1349912837bbSHong Zhang     i = owners_co[proc];
13509566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1351912837bbSHong Zhang     k++;
1352912837bbSHong Zhang   }
1353912837bbSHong Zhang 
13547f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
1355912837bbSHong Zhang   /* ---------------------------------------- */
13569566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13579566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13589566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13599566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1360912837bbSHong Zhang   c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1361912837bbSHong Zhang 
1362912837bbSHong Zhang   /* receives coj are complete */
136348a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13649566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13659566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1366912837bbSHong Zhang 
1367912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
13684ede91e3SHong Zhang   a_loc = (Mat_SeqAIJ *)(ptap->A_loc)->data;
1369669e9c86SHong Zhang 
1370669e9c86SHong Zhang   /* create and initialize a linked list */
1371*eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */
13724ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1373669e9c86SHong Zhang 
1374912837bbSHong Zhang   for (k = 0; k < nrecv; k++) { /* k-th received message */
1375912837bbSHong Zhang     Jptr = buf_rj[k];
1376*eec179cfSJacob Faibussowitsch     for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISetWithMode(ta, *(Jptr + j) + 1, 1, INSERT_VALUES));
1377912837bbSHong Zhang   }
1378*eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
1379*eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
1380912837bbSHong Zhang 
1381912837bbSHong Zhang   /* (4) send and recv coi */
1382912837bbSHong Zhang   /*-----------------------*/
13839566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
13849566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
13859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
1386912837bbSHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1387912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1388912837bbSHong Zhang     if (!len_s[proc]) continue;
1389912837bbSHong Zhang     /* form outgoing message for i-structure:
1390912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1391912837bbSHong Zhang                [1:nrows]:           row index (global)
1392912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1393912837bbSHong Zhang     */
1394912837bbSHong Zhang     /*-------------------------------------------*/
1395912837bbSHong Zhang     nrows       = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1396912837bbSHong Zhang     buf_si_i    = buf_si + nrows + 1;
1397912837bbSHong Zhang     buf_si[0]   = nrows;
1398912837bbSHong Zhang     buf_si_i[0] = 0;
1399912837bbSHong Zhang     nrows       = 0;
1400912837bbSHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1401912837bbSHong Zhang       nzi                 = coi[i + 1] - coi[i];
1402912837bbSHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1403912837bbSHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1404912837bbSHong Zhang       nrows++;
1405912837bbSHong Zhang     }
14069566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1407912837bbSHong Zhang     k++;
1408912837bbSHong Zhang     buf_si += len_si[proc];
1409912837bbSHong Zhang   }
141048a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
14119566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
14129566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1413912837bbSHong Zhang 
14149566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
14159566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
14169566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
14179566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1418912837bbSHong Zhang 
14194222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1420912837bbSHong Zhang   /* ------------------------------------------ */
14214222ddf1SHong Zhang   /* set initial free space to be Crmax, sufficient for holding nozeros in each row of C */
14229566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1423912837bbSHong Zhang   current_space = free_space;
1424912837bbSHong Zhang 
14259566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1426912837bbSHong Zhang   for (k = 0; k < nrecv; k++) {
1427912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1428912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1429912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1430a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1431912837bbSHong Zhang   }
1432912837bbSHong Zhang 
1433d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, an, dnz, onz);
14349566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14358c78258cSHong Zhang   for (i = 0; i < pn; i++) { /* for each local row of C */
14364222ddf1SHong Zhang     /* add C_loc into C */
1437912837bbSHong Zhang     nzi  = c_loc->i[i + 1] - c_loc->i[i];
1438912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14399566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1440912837bbSHong Zhang 
1441912837bbSHong Zhang     /* add received col data into lnk */
1442912837bbSHong Zhang     for (k = 0; k < nrecv; k++) { /* k-th received message */
1443912837bbSHong Zhang       if (i == *nextrow[k]) {     /* i-th row */
1444912837bbSHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1445912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14469566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14479371c9d4SSatish Balay         nextrow[k]++;
14489371c9d4SSatish Balay         nextci[k]++;
1449912837bbSHong Zhang       }
1450912837bbSHong Zhang     }
14518c78258cSHong Zhang 
14528c78258cSHong Zhang     /* add missing diagonal entry */
14538c78258cSHong Zhang     if (C->force_diagonals) {
14548c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14559566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14568c78258cSHong Zhang     }
14578c78258cSHong Zhang 
1458912837bbSHong Zhang     nzi = lnk[0];
1459912837bbSHong Zhang 
1460912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14619566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14629566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1463912837bbSHong Zhang   }
14649566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14659566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
14669566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1467912837bbSHong Zhang 
1468912837bbSHong Zhang   /* local sizes and preallocation */
14699566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
14709566063dSJacob Faibussowitsch   if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
14719566063dSJacob Faibussowitsch   if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14729566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1473d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
1474912837bbSHong Zhang 
147569be949aSStefano Zampini   /* add C_loc and C_oth to C */
14769566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
147769be949aSStefano Zampini   for (i = 0; i < pn; i++) {
14788c78258cSHong Zhang     ncols = c_loc->i[i + 1] - c_loc->i[i];
14798c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14808c78258cSHong Zhang     row   = rstart + i;
14819566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14828c78258cSHong Zhang 
148348a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
148469be949aSStefano Zampini   }
148569be949aSStefano Zampini   for (i = 0; i < con; i++) {
14868c78258cSHong Zhang     ncols = c_oth->i[i + 1] - c_oth->i[i];
14878c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14888c78258cSHong Zhang     row   = prmap[i];
14899566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
149069be949aSStefano Zampini   }
14919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14939566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
149469be949aSStefano Zampini 
1495912837bbSHong Zhang   /* members in merge */
14969566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
14979566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
14989566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
14999566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
15009566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
15019566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
15029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1503912837bbSHong Zhang 
15044222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
15056718818eSStefano Zampini   C->product->data    = ptap;
15066718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
1507912837bbSHong Zhang   PetscFunctionReturn(0);
1508912837bbSHong Zhang }
1509912837bbSHong Zhang 
1510d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C)
1511d71ae5a4SJacob Faibussowitsch {
15126718818eSStefano Zampini   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1513669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
15146718818eSStefano Zampini   Mat_APMPI         *ptap;
1515669e9c86SHong Zhang   Mat                A_loc, C_loc, C_oth;
1516912837bbSHong Zhang   PetscInt           i, rstart, rend, cm, ncols, row;
1517912837bbSHong Zhang   const PetscInt    *cols;
1518912837bbSHong Zhang   const PetscScalar *vals;
1519912837bbSHong Zhang 
1520912837bbSHong Zhang   PetscFunctionBegin;
15216718818eSStefano Zampini   MatCheckProduct(C, 3);
15226718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
152328b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
152428b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15259566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1526912837bbSHong Zhang 
1527669e9c86SHong Zhang   /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1528669e9c86SHong Zhang   /* 1) get R = Pd^T, Ro = Po^T */
1529669e9c86SHong Zhang   /*----------------------------*/
15301cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1531acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15321cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1533acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1534669e9c86SHong Zhang 
1535669e9c86SHong Zhang   /* 2) compute numeric A_loc */
1536669e9c86SHong Zhang   /*--------------------------*/
15379566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1538912837bbSHong Zhang 
1539669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15404ede91e3SHong Zhang   A_loc = ptap->A_loc;
15419566063dSJacob Faibussowitsch   PetscCall(((ptap->C_loc)->ops->matmultnumeric)(ptap->Rd, A_loc, ptap->C_loc));
15429566063dSJacob Faibussowitsch   PetscCall(((ptap->C_oth)->ops->matmultnumeric)(ptap->Ro, A_loc, ptap->C_oth));
1543912837bbSHong Zhang   C_loc = ptap->C_loc;
1544912837bbSHong Zhang   C_oth = ptap->C_oth;
1545912837bbSHong Zhang 
154669be949aSStefano Zampini   /* add C_loc and C_oth to C */
15479566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1548912837bbSHong Zhang 
1549912837bbSHong Zhang   /* C_loc -> C */
1550912837bbSHong Zhang   cm    = C_loc->rmap->N;
1551912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_loc->data;
1552912837bbSHong Zhang   cols  = c_seq->j;
1553912837bbSHong Zhang   vals  = c_seq->a;
1554912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1555912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1556912837bbSHong Zhang     row   = rstart + i;
15579566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15589371c9d4SSatish Balay     cols += ncols;
15599371c9d4SSatish Balay     vals += ncols;
1560912837bbSHong Zhang   }
1561912837bbSHong Zhang 
1562912837bbSHong Zhang   /* Co -> C, off-processor part */
1563912837bbSHong Zhang   cm    = C_oth->rmap->N;
1564912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_oth->data;
1565912837bbSHong Zhang   cols  = c_seq->j;
1566912837bbSHong Zhang   vals  = c_seq->a;
1567912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1568912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1569912837bbSHong Zhang     row   = p->garray[i];
15709566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15719371c9d4SSatish Balay     cols += ncols;
15729371c9d4SSatish Balay     vals += ncols;
1573912837bbSHong Zhang   }
15749566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15769566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
1577912837bbSHong Zhang   PetscFunctionReturn(0);
1578912837bbSHong Zhang }
1579912837bbSHong Zhang 
1580d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C)
1581d71ae5a4SJacob Faibussowitsch {
1582d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
15836718818eSStefano Zampini   Mat_MPIAIJ          *p  = (Mat_MPIAIJ *)P->data;
1584d6ab1dc0SHong Zhang   Mat_SeqAIJ          *pd = (Mat_SeqAIJ *)(p->A)->data, *po = (Mat_SeqAIJ *)(p->B)->data;
15851cdffd5eSHong Zhang   Mat_APMPI           *ap;
1586e745005bSHong Zhang   PetscInt            *adj;
1587e745005bSHong Zhang   PetscInt             i, j, k, anz, pnz, row, *cj, nexta;
1588e745005bSHong Zhang   MatScalar           *ada, *ca, valtmp;
1589d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1590ce94432eSBarry Smith   MPI_Comm             comm;
1591d6ab1dc0SHong Zhang   PetscMPIInt          size, rank, taga, *len_s;
1592d6ab1dc0SHong Zhang   PetscInt            *owners, proc, nrows, **buf_ri_k, **nextrow, **nextci;
1593d6ab1dc0SHong Zhang   PetscInt           **buf_ri, **buf_rj;
1594d6ab1dc0SHong Zhang   PetscInt             cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1595d6ab1dc0SHong Zhang   MPI_Request         *s_waits, *r_waits;
1596d6ab1dc0SHong Zhang   MPI_Status          *status;
1597d6ab1dc0SHong Zhang   MatScalar          **abuf_r, *ba_i, *pA, *coa, *ba;
1598ce496241SStefano Zampini   const PetscScalar   *dummy;
15994e201bd7SHong Zhang   PetscInt            *ai, *aj, *coi, *coj, *poJ, *pdJ;
1600d6ab1dc0SHong Zhang   Mat                  A_loc;
1601d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1602d6ab1dc0SHong Zhang 
1603d6ab1dc0SHong Zhang   PetscFunctionBegin;
16046718818eSStefano Zampini   MatCheckProduct(C, 3);
16051cdffd5eSHong Zhang   ap = (Mat_APMPI *)C->product->data;
16061cdffd5eSHong Zhang   PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
16071cdffd5eSHong Zhang   PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
16089566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
16099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
16109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1611d6ab1dc0SHong Zhang 
16121cdffd5eSHong Zhang   merge = ap->merge;
1613d6ab1dc0SHong Zhang 
1614e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1615e745005bSHong Zhang   /*------------------------------------------*/
1616d6ab1dc0SHong Zhang   /* get data from symbolic products */
16179371c9d4SSatish Balay   coi = merge->coi;
16189371c9d4SSatish Balay   coj = merge->coj;
16199566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(coi[pon] + 1, &coa));
16209371c9d4SSatish Balay   bi     = merge->bi;
16219371c9d4SSatish Balay   bj     = merge->bj;
1622d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
16239566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bi[cm] + 1, &ba));
1624d6ab1dc0SHong Zhang 
1625d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
16261cdffd5eSHong Zhang   A_loc = ap->A_loc;
16279566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
1628d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ *)(A_loc)->data;
1629d6ab1dc0SHong Zhang   ai    = a_loc->i;
1630d6ab1dc0SHong Zhang   aj    = a_loc->j;
1631d6ab1dc0SHong Zhang 
1632ce496241SStefano Zampini   /* trigger copy to CPU */
16339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16349566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16359566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1637d6ab1dc0SHong Zhang   for (i = 0; i < am; i++) {
1638d6ab1dc0SHong Zhang     anz = ai[i + 1] - ai[i];
1639d6ab1dc0SHong Zhang     adj = aj + ai[i];
1640d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1641d6ab1dc0SHong Zhang 
1642d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1643e745005bSHong Zhang     /*-------------------------------------------------------------*/
1644d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1645d6ab1dc0SHong Zhang     pnz = po->i[i + 1] - po->i[i];
1646d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1647d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1648d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1649d6ab1dc0SHong Zhang       row = poJ[j];
1650d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1651d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1652e745005bSHong Zhang       /* perform sparse axpy */
1653e745005bSHong Zhang       nexta  = 0;
1654d6ab1dc0SHong Zhang       valtmp = pA[j];
1655e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1656e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1657e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1658e745005bSHong Zhang           nexta++;
1659d6ab1dc0SHong Zhang         }
1660e745005bSHong Zhang       }
16619566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1662d6ab1dc0SHong Zhang     }
1663d6ab1dc0SHong Zhang 
1664d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1665d6ab1dc0SHong Zhang     pnz = pd->i[i + 1] - pd->i[i];
1666d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1667d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1668d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1669d6ab1dc0SHong Zhang       row = pdJ[j];
1670d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1671d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1672e745005bSHong Zhang       /* perform sparse axpy */
1673e745005bSHong Zhang       nexta  = 0;
1674d6ab1dc0SHong Zhang       valtmp = pA[j];
1675e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1676e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1677e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1678e745005bSHong Zhang           nexta++;
1679d6ab1dc0SHong Zhang         }
1680e745005bSHong Zhang       }
16819566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1682d6ab1dc0SHong Zhang     }
1683d6ab1dc0SHong Zhang   }
1684d6ab1dc0SHong Zhang 
1685d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1686d6ab1dc0SHong Zhang   /*------------------------------------*/
1687d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1688d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1689d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16909566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &taga));
16919566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1692d6ab1dc0SHong Zhang 
16939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend + 1, &s_waits, size, &status));
1694d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1695d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1696d6ab1dc0SHong Zhang     i = merge->owners_co[proc];
16979566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1698d6ab1dc0SHong Zhang     k++;
1699d6ab1dc0SHong Zhang   }
17009566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
17019566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1702d6ab1dc0SHong Zhang 
17039566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits, status));
17049566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
17059566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1706d6ab1dc0SHong Zhang 
1707d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
1708d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
17099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1710d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1711e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1712d6ab1dc0SHong Zhang     nrows       = *(buf_ri_k[k]);
1713d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1714a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1715d6ab1dc0SHong Zhang   }
1716d6ab1dc0SHong Zhang 
1717d6ab1dc0SHong Zhang   for (i = 0; i < cm; i++) {
1718d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1719d6ab1dc0SHong Zhang     bj_i = bj + bi[i];       /* col indices of the i-th row of C */
1720d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1721d6ab1dc0SHong Zhang     bnz  = bi[i + 1] - bi[i];
1722d6ab1dc0SHong Zhang     /* add received vals into ba */
1723d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1724d6ab1dc0SHong Zhang       /* i-th row */
1725d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1726d6ab1dc0SHong Zhang         cnz    = *(nextci[k] + 1) - *nextci[k];
1727d6ab1dc0SHong Zhang         cj     = buf_rj[k] + *(nextci[k]);
1728d6ab1dc0SHong Zhang         ca     = abuf_r[k] + *(nextci[k]);
1729d6ab1dc0SHong Zhang         nextcj = 0;
1730d6ab1dc0SHong Zhang         for (j = 0; nextcj < cnz; j++) {
1731d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1732d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1733d6ab1dc0SHong Zhang           }
1734d6ab1dc0SHong Zhang         }
17359371c9d4SSatish Balay         nextrow[k]++;
17369371c9d4SSatish Balay         nextci[k]++;
17379566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * cnz));
1738d6ab1dc0SHong Zhang       }
1739d6ab1dc0SHong Zhang     }
17409566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1741d6ab1dc0SHong Zhang   }
17429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1744d6ab1dc0SHong Zhang 
17459566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17469566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17479566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17489566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
1749d6ab1dc0SHong Zhang   PetscFunctionReturn(0);
1750d6ab1dc0SHong Zhang }
1751d6ab1dc0SHong Zhang 
1752d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C)
1753d71ae5a4SJacob Faibussowitsch {
1754b419842dSStefano Zampini   Mat                  A_loc;
17551cdffd5eSHong Zhang   Mat_APMPI           *ap;
17560298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
17576718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1758d6ab1dc0SHong Zhang   PetscInt            *pdti, *pdtj, *poti, *potj, *ptJ;
1759d6ab1dc0SHong Zhang   PetscInt             nnz;
1760d6ab1dc0SHong Zhang   PetscInt            *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1761d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, pn = P->cmap->n;
1762ce94432eSBarry Smith   MPI_Comm             comm;
1763d6ab1dc0SHong Zhang   PetscMPIInt          size, rank, tagi, tagj, *len_si, *len_s, *len_ri;
1764d6ab1dc0SHong Zhang   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
1765d6ab1dc0SHong Zhang   PetscInt             len, proc, *dnz, *onz, *owners;
1766d6ab1dc0SHong Zhang   PetscInt             nzi, *bi, *bj;
1767d6ab1dc0SHong Zhang   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1768d6ab1dc0SHong Zhang   MPI_Request         *swaits, *rwaits;
1769d6ab1dc0SHong Zhang   MPI_Status          *sstatus, rstatus;
1770d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1771d6ab1dc0SHong Zhang   PetscInt            *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1772d6ab1dc0SHong Zhang   PetscReal            afill  = 1.0, afill_tmp;
1773*eec179cfSJacob Faibussowitsch   PetscInt             rstart = P->cmap->rstart, rmax, Armax;
1774b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
1775*eec179cfSJacob Faibussowitsch   PetscHMapI           ta;
1776b92f168fSBarry Smith   MatType              mtype;
1777d6ab1dc0SHong Zhang 
1778d6ab1dc0SHong Zhang   PetscFunctionBegin;
17799566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1780d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17819371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17829371c9d4SSatish Balay              A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1783d6ab1dc0SHong Zhang 
17849566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1786d6ab1dc0SHong Zhang 
17873cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
17881cdffd5eSHong Zhang   PetscCall(PetscNew(&ap));
1789d6ab1dc0SHong Zhang 
1790d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17919566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17922205254eSKarl Rupp 
17931cdffd5eSHong Zhang   ap->A_loc = A_loc;
1794d6ab1dc0SHong Zhang   a_loc     = (Mat_SeqAIJ *)(A_loc)->data;
1795d6ab1dc0SHong Zhang   ai        = a_loc->i;
1796d6ab1dc0SHong Zhang   aj        = a_loc->j;
1797d6ab1dc0SHong Zhang 
1798d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
1799d6ab1dc0SHong Zhang   /*----------------------------------------------------*/
18009566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
18019566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1802d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1803d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
18049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon + 1, &coi));
1805d6ab1dc0SHong Zhang   coi[0] = 0;
1806d6ab1dc0SHong Zhang 
1807d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1808f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
18099566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1810d6ab1dc0SHong Zhang   current_space = free_space;
181119f0e57aSHong Zhang 
1812d6ab1dc0SHong Zhang   /* create and initialize a linked list */
1813*eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta));
18144b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, am, ta);
1815*eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
181633ba5e2fSHong Zhang 
18179566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1818d6ab1dc0SHong Zhang 
1819d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1820d6ab1dc0SHong Zhang     pnz = poti[i + 1] - poti[i];
1821d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1822d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1823d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1824d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1825d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1826d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
18279566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1828d6ab1dc0SHong Zhang     }
1829d6ab1dc0SHong Zhang     nnz = lnk[0];
1830d6ab1dc0SHong Zhang 
1831d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1832d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
18339566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1834d6ab1dc0SHong Zhang       nspacedouble++;
1835d6ab1dc0SHong Zhang     }
1836d6ab1dc0SHong Zhang 
1837d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18389566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18392205254eSKarl Rupp 
1840d6ab1dc0SHong Zhang     current_space->array += nnz;
1841d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1842d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18432205254eSKarl Rupp 
1844d6ab1dc0SHong Zhang     coi[i + 1] = coi[i] + nnz;
1845d6ab1dc0SHong Zhang   }
1846d6ab1dc0SHong Zhang 
18479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(coi[pon] + 1, &coj));
18489566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18499566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18502205254eSKarl Rupp 
1851118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1852d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1853d6ab1dc0SHong Zhang 
1854d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1855d6ab1dc0SHong Zhang   /*----------------------------------------------*/
1856d6ab1dc0SHong Zhang   /* determine row ownership */
18579566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18589566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18592205254eSKarl Rupp 
1860d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1861d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18622205254eSKarl Rupp 
18639566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1864d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1865d6ab1dc0SHong Zhang 
1866d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18679566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &len_si));
18689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &merge->len_s));
18692205254eSKarl Rupp 
1870d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1871d6ab1dc0SHong Zhang   merge->nsend = 0;
1872d6ab1dc0SHong Zhang 
18739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size + 2, &owners_co));
1874d6ab1dc0SHong Zhang 
1875d6ab1dc0SHong Zhang   proc = 0;
1876d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1877d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
1878d6ab1dc0SHong Zhang     len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1879d6ab1dc0SHong Zhang     len_s[proc] += coi[i + 1] - coi[i];
1880d6ab1dc0SHong Zhang   }
1881d6ab1dc0SHong Zhang 
1882d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1883d6ab1dc0SHong Zhang   owners_co[0] = 0;
1884d6ab1dc0SHong Zhang   for (proc = 0; proc < size; proc++) {
1885d6ab1dc0SHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1886d6ab1dc0SHong Zhang     if (len_si[proc]) {
1887d6ab1dc0SHong Zhang       merge->nsend++;
1888d6ab1dc0SHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1);
1889d6ab1dc0SHong Zhang       len += len_si[proc];
1890d6ab1dc0SHong Zhang     }
1891d6ab1dc0SHong Zhang   }
1892d6ab1dc0SHong Zhang 
1893d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18949566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18959566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1896d6ab1dc0SHong Zhang 
1897d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
18989566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
18999566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
19009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &swaits));
1901d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1902d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1903d6ab1dc0SHong Zhang     i = owners_co[proc];
19049566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1905d6ab1dc0SHong Zhang     k++;
1906d6ab1dc0SHong Zhang   }
1907d6ab1dc0SHong Zhang 
1908d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
19099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &sstatus));
1910d6ab1dc0SHong Zhang   for (i = 0; i < merge->nrecv; i++) {
1911ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19129566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1913d6ab1dc0SHong Zhang   }
19149566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19159566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1916d6ab1dc0SHong Zhang 
19170acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1918c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
19190acc65b4SHong Zhang   for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
19200acc65b4SHong Zhang     Jptr = buf_rj[k];
1921*eec179cfSJacob Faibussowitsch     for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISetWithMode(ta, *(Jptr + j) + 1, 1, INSERT_VALUES));
19220acc65b4SHong Zhang   }
1923*eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
19240acc65b4SHong Zhang 
1925d6ab1dc0SHong Zhang   /* send and recv coi */
1926d6ab1dc0SHong Zhang   /*-------------------*/
19279566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
19289566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
19299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
1930d6ab1dc0SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1931d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1932d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1933d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1934d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1935d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1936d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1937d6ab1dc0SHong Zhang     */
1938d6ab1dc0SHong Zhang     /*-------------------------------------------*/
1939d6ab1dc0SHong Zhang     nrows       = len_si[proc] / 2 - 1;
1940d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows + 1;
1941d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1942d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1943d6ab1dc0SHong Zhang     nrows       = 0;
1944d6ab1dc0SHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1945d6ab1dc0SHong Zhang       nzi                 = coi[i + 1] - coi[i];
1946d6ab1dc0SHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1947d6ab1dc0SHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1948d6ab1dc0SHong Zhang       nrows++;
1949d6ab1dc0SHong Zhang     }
19509566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1951d6ab1dc0SHong Zhang     k++;
1952d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1953d6ab1dc0SHong Zhang   }
1954d6ab1dc0SHong Zhang   i = merge->nrecv;
1955d6ab1dc0SHong Zhang   while (i--) {
1956ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19579566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1958d6ab1dc0SHong Zhang   }
19599566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19609566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19619566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19629566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19639566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19649566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19659566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1966d6ab1dc0SHong Zhang 
1967d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1968d6ab1dc0SHong Zhang   /*------------------------------------------*/
1969d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn + 1, &bi));
1971d6ab1dc0SHong Zhang   bi[0] = 0;
1972d6ab1dc0SHong Zhang 
1973d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1974f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19759566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1976d6ab1dc0SHong Zhang   current_space = free_space;
1977d6ab1dc0SHong Zhang 
19789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1979d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1980d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1981d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1982d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
19832d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1984d6ab1dc0SHong Zhang   }
1985d6ab1dc0SHong Zhang 
19869566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1987d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1988d6ab1dc0SHong Zhang   rmax = 0;
1989d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
1990d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1991d6ab1dc0SHong Zhang     pnz = pdti[i + 1] - pdti[i];
1992d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1993d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1994d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of AP == col of Pt */
1995d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1996d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1997d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
19989566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1999d6ab1dc0SHong Zhang     }
2000d6ab1dc0SHong Zhang 
2001d6ab1dc0SHong Zhang     /* add received col data into lnk */
2002d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
2003d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
2004d6ab1dc0SHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
2005d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
20069566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
20079371c9d4SSatish Balay         nextrow[k]++;
20089371c9d4SSatish Balay         nextci[k]++;
2009d6ab1dc0SHong Zhang       }
2010d6ab1dc0SHong Zhang     }
20118c78258cSHong Zhang 
20128c78258cSHong Zhang     /* add missing diagonal entry */
20138c78258cSHong Zhang     if (C->force_diagonals) {
20148c78258cSHong Zhang       k = i + owners[rank]; /* column index */
20159566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
20168c78258cSHong Zhang     }
20178c78258cSHong Zhang 
2018d6ab1dc0SHong Zhang     nnz = lnk[0];
2019d6ab1dc0SHong Zhang 
2020d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
2021d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
20229566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
2023d6ab1dc0SHong Zhang       nspacedouble++;
2024d6ab1dc0SHong Zhang     }
2025d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
20269566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
20279566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
20282205254eSKarl Rupp 
2029d6ab1dc0SHong Zhang     current_space->array += nnz;
2030d6ab1dc0SHong Zhang     current_space->local_used += nnz;
2031d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
20322205254eSKarl Rupp 
2033d6ab1dc0SHong Zhang     bi[i + 1] = bi[i] + nnz;
2034d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2035d6ab1dc0SHong Zhang   }
20369566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2037d6ab1dc0SHong Zhang 
20389566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[pn] + 1, &bj));
20399566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2040118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2041d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20429566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
2043*eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
20449566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20459566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2046d6ab1dc0SHong Zhang 
20474222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20484222ddf1SHong Zhang   /*-------------------------------------------------------------------------------*/
20499566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
20509566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(C, PetscAbs(P->cmap->bs), PetscAbs(A->cmap->bs)));
20519566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
20529566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
20539566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2054d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
20559566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C, 1));
20569566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2057d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
2058d6ab1dc0SHong Zhang     row  = i + rstart;
2059d6ab1dc0SHong Zhang     nnz  = bi[i + 1] - bi[i];
2060d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20619566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2062d6ab1dc0SHong Zhang   }
20639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20649566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20659566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2066d6ab1dc0SHong Zhang   merge->bi        = bi;
2067d6ab1dc0SHong Zhang   merge->bj        = bj;
2068d6ab1dc0SHong Zhang   merge->coi       = coi;
2069d6ab1dc0SHong Zhang   merge->coj       = coj;
2070d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2071d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2072d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2073d6ab1dc0SHong Zhang 
20744222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20751cdffd5eSHong Zhang   C->product->data    = ap;
20766718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
20771cdffd5eSHong Zhang   ap->merge           = merge;
2078a560ef98SHong Zhang 
20794222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2080f96d37fcSHong Zhang 
2081f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2082f96d37fcSHong Zhang   if (bi[pn] != 0) {
20839566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20849566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2085f96d37fcSHong Zhang   } else {
20869566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
2087f96d37fcSHong Zhang   }
2088f96d37fcSHong Zhang #endif
2089f96d37fcSHong Zhang   PetscFunctionReturn(0);
2090f96d37fcSHong Zhang }
20914222ddf1SHong Zhang 
20924222ddf1SHong Zhang /* ---------------------------------------------------------------- */
2093d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
2094d71ae5a4SJacob Faibussowitsch {
20954222ddf1SHong Zhang   Mat_Product *product = C->product;
20964222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
20974222ddf1SHong Zhang   PetscReal    fill = product->fill;
20984222ddf1SHong Zhang   PetscBool    flg;
20994222ddf1SHong Zhang 
21004222ddf1SHong Zhang   PetscFunctionBegin;
21014222ddf1SHong Zhang   /* scalable */
21029566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
21034222ddf1SHong Zhang   if (flg) {
21049566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
21054222ddf1SHong Zhang     goto next;
21064222ddf1SHong Zhang   }
21074222ddf1SHong Zhang 
21084222ddf1SHong Zhang   /* nonscalable */
21099566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
21104222ddf1SHong Zhang   if (flg) {
21119566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
21124222ddf1SHong Zhang     goto next;
21134222ddf1SHong Zhang   }
21144222ddf1SHong Zhang 
21154222ddf1SHong Zhang   /* matmatmult */
21169566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
21174222ddf1SHong Zhang   if (flg) {
21184222ddf1SHong Zhang     Mat        At;
21194222ddf1SHong Zhang     Mat_APMPI *ptap;
21204222ddf1SHong Zhang 
21219566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
21229566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
21236718818eSStefano Zampini     ptap = (Mat_APMPI *)C->product->data;
21244222ddf1SHong Zhang     if (ptap) {
21254222ddf1SHong Zhang       ptap->Pt            = At;
21266718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
21274222ddf1SHong Zhang     }
21284222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
21294222ddf1SHong Zhang     goto next;
21304222ddf1SHong Zhang   }
21314222ddf1SHong Zhang 
21324e84afc0SStefano Zampini   /* backend general code */
21339566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "backend", &flg));
21344e84afc0SStefano Zampini   if (flg) {
21359566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21364e84afc0SStefano Zampini     PetscFunctionReturn(0);
21374e84afc0SStefano Zampini   }
21384e84afc0SStefano Zampini 
21394222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21404222ddf1SHong Zhang 
21414222ddf1SHong Zhang next:
21424222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21434222ddf1SHong Zhang   PetscFunctionReturn(0);
21444222ddf1SHong Zhang }
21454222ddf1SHong Zhang 
21464222ddf1SHong Zhang /* ---------------------------------------------------------------- */
21474222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
2148d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
2149d71ae5a4SJacob Faibussowitsch {
21504222ddf1SHong Zhang   Mat_Product *product = C->product;
21514222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21524222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21534e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21544e84afc0SStefano Zampini   PetscInt    nalg        = 5;
21554222ddf1SHong Zhang #else
21569371c9d4SSatish Balay   const char *algTypes[4] = {
21579371c9d4SSatish Balay     "scalable",
21589371c9d4SSatish Balay     "nonscalable",
21599371c9d4SSatish Balay     "seqmpi",
21609371c9d4SSatish Balay     "backend",
21619371c9d4SSatish Balay   };
21624e84afc0SStefano Zampini   PetscInt    nalg        = 4;
21634222ddf1SHong Zhang #endif
21644222ddf1SHong Zhang   PetscInt  alg = 1; /* set nonscalable algorithm as default */
21654222ddf1SHong Zhang   PetscBool flg;
21664222ddf1SHong Zhang   MPI_Comm  comm;
21674222ddf1SHong Zhang 
21684222ddf1SHong Zhang   PetscFunctionBegin;
21699566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21704222ddf1SHong Zhang 
21714222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21729566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21734222ddf1SHong Zhang   if (flg) {
21749566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21754222ddf1SHong Zhang 
21764222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21774222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21784222ddf1SHong Zhang       MatInfo   Ainfo, Binfo;
21794222ddf1SHong Zhang       PetscInt  nz_local;
21804222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21814222ddf1SHong Zhang 
21829566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21839566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21844222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21854222ddf1SHong Zhang 
21864222ddf1SHong Zhang       if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21871c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
21884222ddf1SHong Zhang 
21894222ddf1SHong Zhang       if (alg_scalable) {
21904222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
21919566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21929566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21934222ddf1SHong Zhang       }
21944222ddf1SHong Zhang     }
21954222ddf1SHong Zhang   }
21964222ddf1SHong Zhang 
21974222ddf1SHong Zhang   /* Get runtime option */
21984222ddf1SHong Zhang   if (product->api_user) {
2199d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
22009566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2201d0609cedSBarry Smith     PetscOptionsEnd();
22024222ddf1SHong Zhang   } else {
2203d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
22049566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2205d0609cedSBarry Smith     PetscOptionsEnd();
22064222ddf1SHong Zhang   }
220748a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22084222ddf1SHong Zhang 
22094222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
22104222ddf1SHong Zhang   PetscFunctionReturn(0);
22114222ddf1SHong Zhang }
22124222ddf1SHong Zhang 
2213d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2214d71ae5a4SJacob Faibussowitsch {
22158a9c020eSBarry Smith   PetscFunctionBegin;
22168a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
22178a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
22188a9c020eSBarry Smith   PetscFunctionReturn(0);
22198a9c020eSBarry Smith }
22208a9c020eSBarry Smith 
22214222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
2222d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
2223d71ae5a4SJacob Faibussowitsch {
22244222ddf1SHong Zhang   Mat_Product *product = C->product;
22254222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
22264e84afc0SStefano Zampini   const char  *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
22274e84afc0SStefano Zampini   PetscInt     nalg        = 4;
22284222ddf1SHong Zhang   PetscInt     alg         = 1; /* set default algorithm  */
22294222ddf1SHong Zhang   PetscBool    flg;
22304222ddf1SHong Zhang   MPI_Comm     comm;
22314222ddf1SHong Zhang 
22324222ddf1SHong Zhang   PetscFunctionBegin;
22334222ddf1SHong Zhang   /* Check matrix local sizes */
22349566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22359371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22369371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22374222ddf1SHong Zhang 
22384222ddf1SHong Zhang   /* Set default algorithm */
22399566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
224048a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22414222ddf1SHong Zhang 
22424222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22434222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22444222ddf1SHong Zhang     MatInfo   Ainfo, Binfo;
22454222ddf1SHong Zhang     PetscInt  nz_local;
22464222ddf1SHong Zhang     PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22474222ddf1SHong Zhang 
22489566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22499566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22504222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22514222ddf1SHong Zhang 
22524222ddf1SHong Zhang     if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22531c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
22544222ddf1SHong Zhang 
22554222ddf1SHong Zhang     if (alg_scalable) {
22564222ddf1SHong Zhang       alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22579566063dSJacob Faibussowitsch       PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22589566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22594222ddf1SHong Zhang     }
22604222ddf1SHong Zhang   }
22614222ddf1SHong Zhang 
22624222ddf1SHong Zhang   /* Get runtime option */
22634222ddf1SHong Zhang   if (product->api_user) {
2264d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22659566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2266d0609cedSBarry Smith     PetscOptionsEnd();
22674222ddf1SHong Zhang   } else {
2268d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22699566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2270d0609cedSBarry Smith     PetscOptionsEnd();
22714222ddf1SHong Zhang   }
227248a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22734222ddf1SHong Zhang 
22744222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22754222ddf1SHong Zhang   PetscFunctionReturn(0);
22764222ddf1SHong Zhang }
22774222ddf1SHong Zhang 
2278d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
2279d71ae5a4SJacob Faibussowitsch {
22804222ddf1SHong Zhang   Mat_Product *product = C->product;
22814222ddf1SHong Zhang   Mat          A = product->A, P = product->B;
22824222ddf1SHong Zhang   MPI_Comm     comm;
22834222ddf1SHong Zhang   PetscBool    flg;
22844222ddf1SHong Zhang   PetscInt     alg = 1; /* set default algorithm */
22854222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22864e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22874222ddf1SHong Zhang   PetscInt    nalg        = 5;
22884e84afc0SStefano Zampini #else
22894e84afc0SStefano Zampini   const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22904e84afc0SStefano Zampini   PetscInt    nalg        = 6;
22914222ddf1SHong Zhang #endif
22924222ddf1SHong Zhang   PetscInt pN = P->cmap->N;
22934222ddf1SHong Zhang 
22944222ddf1SHong Zhang   PetscFunctionBegin;
22954222ddf1SHong Zhang   /* Check matrix local sizes */
22969566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22979371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22989371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22999371c9d4SSatish Balay   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
23009371c9d4SSatish Balay              A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
23014222ddf1SHong Zhang 
23024222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
23039566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
23044222ddf1SHong Zhang   if (flg) {
23059566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23064222ddf1SHong Zhang 
23074222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
23084222ddf1SHong Zhang     if (pN > 100000) {
23094222ddf1SHong Zhang       MatInfo   Ainfo, Pinfo;
23104222ddf1SHong Zhang       PetscInt  nz_local;
23114222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
23124222ddf1SHong Zhang 
23139566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
23149566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
23154222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
23164222ddf1SHong Zhang 
23174222ddf1SHong Zhang       if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
23181c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
23194222ddf1SHong Zhang 
23204222ddf1SHong Zhang       if (alg_scalable) {
23214222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
23229566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23234222ddf1SHong Zhang       }
23244222ddf1SHong Zhang     }
23254222ddf1SHong Zhang   }
23264222ddf1SHong Zhang 
23274222ddf1SHong Zhang   /* Get runtime option */
23284222ddf1SHong Zhang   if (product->api_user) {
2329d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
23309566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2331d0609cedSBarry Smith     PetscOptionsEnd();
23324222ddf1SHong Zhang   } else {
2333d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
23349566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2335d0609cedSBarry Smith     PetscOptionsEnd();
23364222ddf1SHong Zhang   }
233748a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23384222ddf1SHong Zhang 
23394222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23404222ddf1SHong Zhang   PetscFunctionReturn(0);
23414222ddf1SHong Zhang }
23424222ddf1SHong Zhang 
2343d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
2344d71ae5a4SJacob Faibussowitsch {
23454222ddf1SHong Zhang   Mat_Product *product = C->product;
23464222ddf1SHong Zhang   Mat          A = product->A, R = product->B;
23474222ddf1SHong Zhang 
23484222ddf1SHong Zhang   PetscFunctionBegin;
23494222ddf1SHong Zhang   /* Check matrix local sizes */
23509371c9d4SSatish Balay   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23519371c9d4SSatish Balay              A->rmap->n, R->rmap->n, R->cmap->n);
23524222ddf1SHong Zhang 
23534222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23544222ddf1SHong Zhang   PetscFunctionReturn(0);
23554222ddf1SHong Zhang }
23564222ddf1SHong Zhang 
23574222ddf1SHong Zhang /*
23584222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23594222ddf1SHong Zhang */
2360d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
2361d71ae5a4SJacob Faibussowitsch {
23624222ddf1SHong Zhang   Mat_Product *product     = C->product;
23634222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
23644222ddf1SHong Zhang   PetscInt     alg         = 1; /* default algorithm */
23654222ddf1SHong Zhang   const char  *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23664222ddf1SHong Zhang   PetscInt     nalg        = 3;
23674222ddf1SHong Zhang 
23684222ddf1SHong Zhang   PetscFunctionBegin;
23694222ddf1SHong Zhang   /* Set default algorithm */
23709566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
237148a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23724222ddf1SHong Zhang 
23734222ddf1SHong Zhang   /* Get runtime option */
23744222ddf1SHong Zhang   if (product->api_user) {
2375d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23769566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2377d0609cedSBarry Smith     PetscOptionsEnd();
23784222ddf1SHong Zhang   } else {
2379d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23809566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2381d0609cedSBarry Smith     PetscOptionsEnd();
23824222ddf1SHong Zhang   }
238348a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23844222ddf1SHong Zhang 
23854222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23864222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23874222ddf1SHong Zhang   PetscFunctionReturn(0);
23884222ddf1SHong Zhang }
23894222ddf1SHong Zhang 
2390d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
2391d71ae5a4SJacob Faibussowitsch {
23924222ddf1SHong Zhang   Mat_Product *product = C->product;
23934222ddf1SHong Zhang 
23944222ddf1SHong Zhang   PetscFunctionBegin;
23954222ddf1SHong Zhang   switch (product->type) {
2396d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2397d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2398d71ae5a4SJacob Faibussowitsch     break;
2399d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2400d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2401d71ae5a4SJacob Faibussowitsch     break;
2402d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2403d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
2404d71ae5a4SJacob Faibussowitsch     break;
2405d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_PtAP:
2406d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
2407d71ae5a4SJacob Faibussowitsch     break;
2408d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_RARt:
2409d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
2410d71ae5a4SJacob Faibussowitsch     break;
2411d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABC:
2412d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
2413d71ae5a4SJacob Faibussowitsch     break;
2414d71ae5a4SJacob Faibussowitsch   default:
2415d71ae5a4SJacob Faibussowitsch     break;
24164222ddf1SHong Zhang   }
24174222ddf1SHong Zhang   PetscFunctionReturn(0);
24184222ddf1SHong Zhang }
2419