12499ec78SHong Zhang /* 22499ec78SHong Zhang Defines matrix-matrix product routines for pairs of MPIAIJ matrices 32499ec78SHong Zhang C = A * B 42499ec78SHong Zhang */ 5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 8c6db04a5SJed Brown #include <petscbt.h> 9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h> 10af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h> 121634b032SHong Zhang 135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE) 144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat); 155e5acdf2Sstefano_zampini #endif 165e5acdf2Sstefano_zampini 17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C) 18d71ae5a4SJacob Faibussowitsch { 198a9c020eSBarry Smith Mat_Product *product = C->product; 208a9c020eSBarry Smith Mat B = product->B; 218a9c020eSBarry Smith 228a9c020eSBarry Smith PetscFunctionBegin; 238a9c020eSBarry Smith PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B)); 248a9c020eSBarry Smith PetscCall(MatDestroy(&B)); 258a9c020eSBarry Smith PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C)); 263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278a9c020eSBarry Smith } 288a9c020eSBarry Smith 29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C) 30d71ae5a4SJacob Faibussowitsch { 314222ddf1SHong Zhang Mat_Product *product = C->product; 324222ddf1SHong Zhang Mat A = product->A, B = product->B; 334222ddf1SHong Zhang MatProductAlgorithm alg = product->alg; 344222ddf1SHong Zhang PetscReal fill = product->fill; 355e68f438SHong Zhang PetscBool flg; 362499ec78SHong Zhang 372499ec78SHong Zhang PetscFunctionBegin; 384222ddf1SHong Zhang /* scalable */ 399566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 404222ddf1SHong Zhang if (flg) { 419566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 430fc8cf34SHong Zhang } 447d0a89b7SHong Zhang 454222ddf1SHong Zhang /* nonscalable */ 469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "nonscalable", &flg)); 474222ddf1SHong Zhang if (flg) { 489566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 504222ddf1SHong Zhang } 514222ddf1SHong Zhang 524222ddf1SHong Zhang /* seqmpi */ 539566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "seqmpi", &flg)); 544222ddf1SHong Zhang if (flg) { 559566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C)); 563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 574222ddf1SHong Zhang } 584222ddf1SHong Zhang 594e84afc0SStefano Zampini /* backend general code */ 609566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "backend", &flg)); 614e84afc0SStefano Zampini if (flg) { 629566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 644e84afc0SStefano Zampini } 654e84afc0SStefano Zampini 664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 684222ddf1SHong Zhang if (flg) { 699566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 714222ddf1SHong Zhang } 724222ddf1SHong Zhang #endif 734222ddf1SHong Zhang SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 742499ec78SHong Zhang } 752499ec78SHong Zhang 76d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data) 77d71ae5a4SJacob Faibussowitsch { 786718818eSStefano Zampini Mat_APMPI *ptap = (Mat_APMPI *)data; 79598bc09dSHong Zhang 80598bc09dSHong Zhang PetscFunctionBegin; 819566063dSJacob Faibussowitsch PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r)); 829566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->bufa)); 839566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_loc)); 849566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->P_oth)); 859566063dSJacob Faibussowitsch PetscCall(MatDestroy(&ptap->Pt)); 869566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->api)); 879566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apj)); 889566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap->apa)); 899566063dSJacob Faibussowitsch PetscCall(PetscFree(ptap)); 903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91598bc09dSHong Zhang } 92598bc09dSHong Zhang 93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C) 94d71ae5a4SJacob Faibussowitsch { 954ae0847bSHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 96*f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 97*f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 98c12557a1SHong Zhang PetscScalar *cda = cd->a, *coa = co->a; 99598bc09dSHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 1009ce11a7cSHong Zhang PetscScalar *apa, *ca; 101c12557a1SHong Zhang PetscInt cm = C->rmap->n; 1026718818eSStefano Zampini Mat_APMPI *ptap; 103c12557a1SHong Zhang PetscInt *api, *apj, *apJ, i, k; 10429825010SHong Zhang PetscInt cstart = C->cmap->rstart; 105598bc09dSHong Zhang PetscInt cdnz, conz, k0, k1; 106ce496241SStefano Zampini const PetscScalar *dummy; 1079467f45fSHong Zhang MPI_Comm comm; 1089467f45fSHong Zhang PetscMPIInt size; 109598bc09dSHong Zhang 110598bc09dSHong Zhang PetscFunctionBegin; 1116718818eSStefano Zampini MatCheckProduct(C, 3); 1126718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 11328b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 1149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1159566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 116aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 11780da8df7SHong Zhang 11865e4b4d4SStefano Zampini /* flag CPU mask for C */ 11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 12065e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 12165e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 12265e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 12365e4b4d4SStefano Zampini #endif 12465e4b4d4SStefano Zampini 125a1a4e84aSHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 126a1a4e84aSHong Zhang /* update numerical values of P_oth and P_loc */ 1279566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1289566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 129598bc09dSHong Zhang 130598bc09dSHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 131598bc09dSHong Zhang /* get data from symbolic products */ 132*f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 133c12557a1SHong Zhang p_oth = NULL; 134*f4f49eeaSPierre Jolivet if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 135598bc09dSHong Zhang 136598bc09dSHong Zhang /* get apa for storing dense row A[i,:]*P */ 137598bc09dSHong Zhang apa = ptap->apa; 138598bc09dSHong Zhang 13929825010SHong Zhang api = ptap->api; 14029825010SHong Zhang apj = ptap->apj; 141ce496241SStefano Zampini /* trigger copy to CPU */ 1429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 1439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 1449566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 1459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 146598bc09dSHong Zhang for (i = 0; i < cm; i++) { 147c12557a1SHong Zhang /* compute apa = A[i,:]*P */ 148e497d3c8SHong Zhang AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa); 149598bc09dSHong Zhang 150598bc09dSHong Zhang /* set values in C */ 151598bc09dSHong Zhang apJ = apj + api[i]; 152598bc09dSHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 153598bc09dSHong Zhang conz = co->i[i + 1] - co->i[i]; 154598bc09dSHong Zhang 155910cf402Sprj- /* 1st off-diagonal part of C */ 1568e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 157598bc09dSHong Zhang k = 0; 158598bc09dSHong Zhang for (k0 = 0; k0 < conz; k0++) { 159598bc09dSHong Zhang if (apJ[k] >= cstart) break; 160598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1615cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 162598bc09dSHong Zhang } 163598bc09dSHong Zhang 164598bc09dSHong Zhang /* diagonal part of C */ 1658e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(cda, cd->i[i]); 166598bc09dSHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 167598bc09dSHong Zhang ca[k1] = apa[apJ[k]]; 1685cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 169598bc09dSHong Zhang } 170598bc09dSHong Zhang 171910cf402Sprj- /* 2nd off-diagonal part of C */ 1728e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 173598bc09dSHong Zhang for (; k0 < conz; k0++) { 174598bc09dSHong Zhang ca[k0] = apa[apJ[k]]; 1755cab4f04SHong Zhang apa[apJ[k++]] = 0.0; 176598bc09dSHong Zhang } 177598bc09dSHong Zhang } 1789566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 1799566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 181598bc09dSHong Zhang } 182598bc09dSHong Zhang 183d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C) 184d71ae5a4SJacob Faibussowitsch { 185ce94432eSBarry Smith MPI_Comm comm; 1869467f45fSHong Zhang PetscMPIInt size; 1873cdca5ebSHong Zhang Mat_APMPI *ptap; 1880298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 1896718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 190*f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 1917dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 1924ae0847bSHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 193d14fa243SHong Zhang PetscInt *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi; 1945cab4f04SHong Zhang PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n; 195598bc09dSHong Zhang PetscBT lnkbt; 196bfcd1a73SHong Zhang PetscReal afill; 197b92f168fSBarry Smith MatType mtype; 198598bc09dSHong Zhang 199598bc09dSHong Zhang PetscFunctionBegin; 2006718818eSStefano Zampini MatCheckProduct(C, 4); 20128b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 2029566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2039566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 2049467f45fSHong Zhang 2053cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 2069566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 207598bc09dSHong Zhang 208598bc09dSHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 2099566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 21019f0e57aSHong Zhang 211598bc09dSHong Zhang /* get P_loc by taking all local rows of P */ 2129566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 213598bc09dSHong Zhang 214*f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 2159371c9d4SSatish Balay pi_loc = p_loc->i; 2169371c9d4SSatish Balay pj_loc = p_loc->j; 2179467f45fSHong Zhang if (size > 1) { 218*f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 2199371c9d4SSatish Balay pi_oth = p_oth->i; 2209371c9d4SSatish Balay pj_oth = p_oth->j; 22120e3dc75SHong Zhang } else { 22220e3dc75SHong Zhang p_oth = NULL; 2239371c9d4SSatish Balay pi_oth = NULL; 2249371c9d4SSatish Balay pj_oth = NULL; 2259467f45fSHong Zhang } 226598bc09dSHong Zhang 227598bc09dSHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 2289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 229a1a4e84aSHong Zhang ptap->api = api; 230598bc09dSHong Zhang api[0] = 0; 231598bc09dSHong Zhang 2325cab4f04SHong Zhang /* create and initialize a linked list */ 2339566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 234598bc09dSHong Zhang 235bfcd1a73SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 2369566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 237598bc09dSHong Zhang current_space = free_space; 238598bc09dSHong Zhang 239d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 240598bc09dSHong Zhang for (i = 0; i < am; i++) { 241598bc09dSHong Zhang /* diagonal portion of A */ 242598bc09dSHong Zhang nzi = adi[i + 1] - adi[i]; 243598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 244598bc09dSHong Zhang row = *adj++; 245598bc09dSHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 246598bc09dSHong Zhang Jptr = pj_loc + pi_loc[row]; 247598bc09dSHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 2489566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 249598bc09dSHong Zhang } 250598bc09dSHong Zhang /* off-diagonal portion of A */ 251598bc09dSHong Zhang nzi = aoi[i + 1] - aoi[i]; 252598bc09dSHong Zhang for (j = 0; j < nzi; j++) { 253598bc09dSHong Zhang row = *aoj++; 254598bc09dSHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 255598bc09dSHong Zhang Jptr = pj_oth + pi_oth[row]; 2569566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt)); 257598bc09dSHong Zhang } 2588c78258cSHong Zhang /* add possible missing diagonal entry */ 2598c78258cSHong Zhang if (C->force_diagonals) { 2608c78258cSHong Zhang j = i + rstart; /* column index */ 2619566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt)); 2628c78258cSHong Zhang } 263598bc09dSHong Zhang 264d14fa243SHong Zhang apnz = lnk[0]; 265598bc09dSHong Zhang api[i + 1] = api[i] + apnz; 266598bc09dSHong Zhang 267598bc09dSHong Zhang /* if free space is not available, double the total space in the list */ 268598bc09dSHong Zhang if (current_space->local_remaining < apnz) { 2699566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 270598bc09dSHong Zhang nspacedouble++; 271598bc09dSHong Zhang } 272598bc09dSHong Zhang 273598bc09dSHong Zhang /* Copy data into free space, then initialize lnk */ 2749566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt)); 2759566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 2762205254eSKarl Rupp 277598bc09dSHong Zhang current_space->array += apnz; 278598bc09dSHong Zhang current_space->local_used += apnz; 279598bc09dSHong Zhang current_space->local_remaining -= apnz; 280598bc09dSHong Zhang } 281598bc09dSHong Zhang 282598bc09dSHong Zhang /* Allocate space for apj, initialize apj, and */ 283598bc09dSHong Zhang /* destroy list of free space and other temporary array(s) */ 2849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj)); 285a1a4e84aSHong Zhang apj = ptap->apj; 2869566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 2879566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 288598bc09dSHong Zhang 289f84c536bSHong Zhang /* malloc apa to store dense row A[i,:]*P */ 2909566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN, &ptap->apa)); 291f84c536bSHong Zhang 2924222ddf1SHong Zhang /* set and assemble symbolic parallel matrix C */ 2939566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 2949566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 295a2f3521dSMark F. Adams 2969566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 2979566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 2989566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 299d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 30017f75172Sandi selinger 3019566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 3029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3049566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 305598bc09dSHong Zhang 3064222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 3074222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 308598bc09dSHong Zhang 3094222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 3106718818eSStefano Zampini C->product->data = ptap; 3116718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 312598bc09dSHong Zhang 313bfcd1a73SHong Zhang /* set MatInfo */ 314118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 315bfcd1a73SHong Zhang if (afill < 1.0) afill = 1.0; 3164222ddf1SHong Zhang C->info.mallocs = nspacedouble; 3174222ddf1SHong Zhang C->info.fill_ratio_given = fill; 3184222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 319bfcd1a73SHong Zhang 320bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO) 321bfcd1a73SHong Zhang if (api[am]) { 3229566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 3239566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 324bfcd1a73SHong Zhang } else { 3259566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 326bfcd1a73SHong Zhang } 327bfcd1a73SHong Zhang #endif 3283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 329598bc09dSHong Zhang } 330598bc09dSHong Zhang 3316718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat); 3326718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat); 3336718818eSStefano Zampini 334d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C) 335d71ae5a4SJacob Faibussowitsch { 3364222ddf1SHong Zhang Mat_Product *product = C->product; 3374222ddf1SHong Zhang Mat A = product->A, B = product->B; 3389123193aSHong Zhang 3399123193aSHong Zhang PetscFunctionBegin; 3404222ddf1SHong Zhang if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend) 34198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend); 3424222ddf1SHong Zhang 3434222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense; 3444222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 3453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3469123193aSHong Zhang } 3472ef1f0ffSBarry Smith 348d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C) 349d71ae5a4SJacob Faibussowitsch { 3504222ddf1SHong Zhang Mat_Product *product = C->product; 3514222ddf1SHong Zhang Mat A = product->A, B = product->B; 3524222ddf1SHong Zhang 3534222ddf1SHong Zhang PetscFunctionBegin; 3544222ddf1SHong Zhang if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend) 35598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 3564222ddf1SHong Zhang 3574222ddf1SHong Zhang C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense; 3584222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 3593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3604222ddf1SHong Zhang } 3614222ddf1SHong Zhang 362d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C) 363d71ae5a4SJacob Faibussowitsch { 3644222ddf1SHong Zhang Mat_Product *product = C->product; 3654222ddf1SHong Zhang 3664222ddf1SHong Zhang PetscFunctionBegin; 3674222ddf1SHong Zhang switch (product->type) { 368d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 369d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C)); 370d71ae5a4SJacob Faibussowitsch break; 371d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 372d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C)); 373d71ae5a4SJacob Faibussowitsch break; 374d71ae5a4SJacob Faibussowitsch default: 375d71ae5a4SJacob Faibussowitsch break; 3764222ddf1SHong Zhang } 3773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3784222ddf1SHong Zhang } 3799123193aSHong Zhang 3804324174eSBarry Smith typedef struct { 3815ea7661aSPierre Jolivet Mat workB, workB1; 3824324174eSBarry Smith MPI_Request *rwaits, *swaits; 38387753ddeSHong Zhang PetscInt nsends, nrecvs; 38487753ddeSHong Zhang MPI_Datatype *stype, *rtype; 3856718818eSStefano Zampini PetscInt blda; 3864324174eSBarry Smith } MPIAIJ_MPIDense; 3874324174eSBarry Smith 38866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx) 389d71ae5a4SJacob Faibussowitsch { 3904324174eSBarry Smith MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx; 39187753ddeSHong Zhang PetscInt i; 3924324174eSBarry Smith 3934324174eSBarry Smith PetscFunctionBegin; 3949566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB)); 3959566063dSJacob Faibussowitsch PetscCall(MatDestroy(&contents->workB1)); 39648a46eb9SPierre Jolivet for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i])); 39748a46eb9SPierre Jolivet for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i])); 3989566063dSJacob Faibussowitsch PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits)); 3999566063dSJacob Faibussowitsch PetscCall(PetscFree(contents)); 4003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4014324174eSBarry Smith } 4024324174eSBarry Smith 403d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C) 404d71ae5a4SJacob Faibussowitsch { 405f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 406b45e3bf4SStefano Zampini PetscInt nz = aij->B->cmap->n, nsends, nrecvs, i, nrows_to, j, blda, m, M, n, N; 4074324174eSBarry Smith MPIAIJ_MPIDense *contents; 4084324174eSBarry Smith VecScatter ctx = aij->Mvctx; 4095ea7661aSPierre Jolivet PetscInt Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, nrows_from, numBb; 41087753ddeSHong Zhang MPI_Comm comm; 41187753ddeSHong Zhang MPI_Datatype type1, *stype, *rtype; 41287753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 41387753ddeSHong Zhang PetscMPIInt *disp; 4146718818eSStefano Zampini PetscBool cisdense; 4159123193aSHong Zhang 4169123193aSHong Zhang PetscFunctionBegin; 4176718818eSStefano Zampini MatCheckProduct(C, 4); 41828b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty"); 4199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 4209566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense)); 42148a46eb9SPierre Jolivet if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name)); 4229566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(C, &m, &n)); 4239566063dSJacob Faibussowitsch PetscCall(MatGetSize(C, &M, &N)); 42448a46eb9SPierre Jolivet if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN)); 4259566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 4269566063dSJacob Faibussowitsch PetscCall(MatSetUp(C)); 4279566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 4289566063dSJacob Faibussowitsch PetscCall(PetscNew(&contents)); 4294324174eSBarry Smith 4309566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4319566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 43287753ddeSHong Zhang 43387753ddeSHong Zhang /* Create column block of B and C for memory scalability when BN is too large */ 43487753ddeSHong Zhang /* Estimate Bbn, column size of Bb */ 43587753ddeSHong Zhang if (nz) { 43687753ddeSHong Zhang Bbn1 = 2 * Am * BN / nz; 437da7cbbe7SHong Zhang if (!Bbn1) Bbn1 = 1; 43887753ddeSHong Zhang } else Bbn1 = BN; 43987753ddeSHong Zhang 44087753ddeSHong Zhang bs = PetscAbs(B->cmap->bs); 44187753ddeSHong Zhang Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */ 44287753ddeSHong Zhang if (Bbn1 > BN) Bbn1 = BN; 443712fec58SPierre Jolivet PetscCall(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm)); 44487753ddeSHong Zhang 44587753ddeSHong Zhang /* Enable runtime option for Bbn */ 446d0609cedSBarry Smith PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 4479566063dSJacob Faibussowitsch PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL)); 448d0609cedSBarry Smith PetscOptionsEnd(); 4496718818eSStefano Zampini Bbn = PetscMin(Bbn, BN); 45087753ddeSHong Zhang 4516718818eSStefano Zampini if (Bbn > 0 && Bbn < BN) { 4525ea7661aSPierre Jolivet numBb = BN / Bbn; 4535ea7661aSPierre Jolivet Bbn1 = BN - numBb * Bbn; 4545ea7661aSPierre Jolivet } else numBb = 0; 45587753ddeSHong Zhang 4565ea7661aSPierre Jolivet if (numBb) { 4579566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb)); 4585ea7661aSPierre Jolivet if (Bbn1) { /* Create workB1 for the remaining columns */ 4599566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1)); 46087753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4619566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1)); 4625ea7661aSPierre Jolivet } else contents->workB1 = NULL; 46387753ddeSHong Zhang } 46487753ddeSHong Zhang 46587753ddeSHong Zhang /* Create work matrix used to store off processor rows of B needed for local product */ 4669566063dSJacob Faibussowitsch PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB)); 46787753ddeSHong Zhang 46887753ddeSHong Zhang /* Use MPI derived data type to reduce memory required by the send/recv buffers */ 4699566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits)); 47087753ddeSHong Zhang contents->stype = stype; 47187753ddeSHong Zhang contents->nsends = nsends; 47287753ddeSHong Zhang 47387753ddeSHong Zhang contents->rtype = rtype; 47487753ddeSHong Zhang contents->nrecvs = nrecvs; 4756718818eSStefano Zampini contents->blda = blda; 47687753ddeSHong Zhang 4779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Bm + 1, &disp)); 47887753ddeSHong Zhang for (i = 0; i < nsends; i++) { 47987753ddeSHong Zhang nrows_to = sstarts[i + 1] - sstarts[i]; 480b45e3bf4SStefano Zampini for (j = 0; j < nrows_to; j++) disp[j] = sindices[sstarts[i] + j]; /* rowB to be sent */ 4819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1)); 4829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i])); 4839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&stype[i])); 4849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 48587753ddeSHong Zhang } 48687753ddeSHong Zhang 48787753ddeSHong Zhang for (i = 0; i < nrecvs; i++) { 48887753ddeSHong Zhang /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */ 48987753ddeSHong Zhang nrows_from = rstarts[i + 1] - rstarts[i]; 49087753ddeSHong Zhang disp[0] = 0; 4919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1)); 4929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i])); 4939566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_commit(&rtype[i])); 4949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Type_free(&type1)); 49587753ddeSHong Zhang } 49687753ddeSHong Zhang 4979566063dSJacob Faibussowitsch PetscCall(PetscFree(disp)); 4989566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL)); 4999566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL)); 5009566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 5019566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 5029566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 5036718818eSStefano Zampini 5046718818eSStefano Zampini C->product->data = contents; 5056718818eSStefano Zampini C->product->destroy = MatMPIAIJ_MPIDenseDestroy; 5064222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense; 5073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5089123193aSHong Zhang } 5099123193aSHong Zhang 51093aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool); 5119612af27SStefano Zampini 512f32d5d43SBarry Smith /* 5132636ff26SBarry Smith Performs an efficient scatter on the rows of B needed by this process; this is 5142636ff26SBarry Smith a modification of the VecScatterBegin_() routines. 51587753ddeSHong Zhang 5169612af27SStefano Zampini Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense() 517f32d5d43SBarry Smith */ 5189612af27SStefano Zampini 51966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB) 520d71ae5a4SJacob Faibussowitsch { 521f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 5221683a169SBarry Smith const PetscScalar *b; 52387753ddeSHong Zhang PetscScalar *rvalues; 524f32d5d43SBarry Smith VecScatter ctx = aij->Mvctx; 52587753ddeSHong Zhang const PetscInt *sindices, *sstarts, *rstarts; 5263515ee7fSJunchao Zhang const PetscMPIInt *sprocs, *rprocs; 5276718818eSStefano Zampini PetscInt i, nsends, nrecvs; 528f32d5d43SBarry Smith MPI_Request *swaits, *rwaits; 529ce94432eSBarry Smith MPI_Comm comm; 5306718818eSStefano Zampini PetscMPIInt tag = ((PetscObject)ctx)->tag, ncols = B->cmap->N, nrows = aij->B->cmap->n, nsends_mpi, nrecvs_mpi; 5314324174eSBarry Smith MPIAIJ_MPIDense *contents; 5324324174eSBarry Smith Mat workB; 53387753ddeSHong Zhang MPI_Datatype *stype, *rtype; 5346718818eSStefano Zampini PetscInt blda; 535f32d5d43SBarry Smith 536f32d5d43SBarry Smith PetscFunctionBegin; 5376718818eSStefano Zampini MatCheckProduct(C, 4); 53828b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5396718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 5409566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/)); 5419566063dSJacob Faibussowitsch PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/)); 5429566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nsends, &nsends_mpi)); 5439566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi)); 544b45e3bf4SStefano Zampini if (Bbidx == 0) workB = *outworkB = contents->workB; 545b45e3bf4SStefano Zampini else workB = *outworkB = contents->workB1; 54608401ef6SPierre Jolivet PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows); 5473515ee7fSJunchao Zhang swaits = contents->swaits; 5483515ee7fSJunchao Zhang rwaits = contents->rwaits; 549f32d5d43SBarry Smith 5509566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 5519566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &blda)); 55208401ef6SPierre Jolivet PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda); 5539566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(workB, &rvalues)); 554f32d5d43SBarry Smith 55587753ddeSHong Zhang /* Post recv, use MPI derived data type to save memory */ 5569566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 55787753ddeSHong Zhang rtype = contents->rtype; 55848a46eb9SPierre Jolivet for (i = 0; i < nrecvs; i++) PetscCallMPI(MPI_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i)); 559f32d5d43SBarry Smith 56087753ddeSHong Zhang stype = contents->stype; 56148a46eb9SPierre Jolivet for (i = 0; i < nsends; i++) PetscCallMPI(MPI_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i)); 5622636ff26SBarry Smith 5639566063dSJacob Faibussowitsch if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE)); 5649566063dSJacob Faibussowitsch if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE)); 565f32d5d43SBarry Smith 5669566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL)); 5679566063dSJacob Faibussowitsch PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL)); 5689566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 5699566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(workB, &rvalues)); 5703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 57187753ddeSHong Zhang } 572f32d5d43SBarry Smith 573d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C) 574d71ae5a4SJacob Faibussowitsch { 575f32d5d43SBarry Smith Mat_MPIAIJ *aij = (Mat_MPIAIJ *)A->data; 576f32d5d43SBarry Smith Mat_MPIDense *bdense = (Mat_MPIDense *)B->data; 577f32d5d43SBarry Smith Mat_MPIDense *cdense = (Mat_MPIDense *)C->data; 578f32d5d43SBarry Smith Mat workB; 57987753ddeSHong Zhang MPIAIJ_MPIDense *contents; 5809123193aSHong Zhang 5819123193aSHong Zhang PetscFunctionBegin; 5826718818eSStefano Zampini MatCheckProduct(C, 3); 58328b400f6SJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 5846718818eSStefano Zampini contents = (MPIAIJ_MPIDense *)C->product->data; 585f32d5d43SBarry Smith /* diagonal block of A times all local rows of B */ 5865ea7661aSPierre Jolivet /* TODO: this calls a symbolic multiplication every time, which could be avoided */ 5879566063dSJacob Faibussowitsch PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_DEFAULT, &cdense->A)); 5885ea7661aSPierre Jolivet if (contents->workB->cmap->n == B->cmap->N) { 58987753ddeSHong Zhang /* get off processor parts of B needed to complete C=A*B */ 5909566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB)); 591f32d5d43SBarry Smith 592f32d5d43SBarry Smith /* off-diagonal block of A times nonlocal rows of B */ 5939566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 59487753ddeSHong Zhang } else { 5955ea7661aSPierre Jolivet Mat Bb, Cb; 5965ea7661aSPierre Jolivet PetscInt BN = B->cmap->N, n = contents->workB->cmap->n, i; 597664c1e85SStefano Zampini PetscBool ccpu; 59887753ddeSHong Zhang 59908401ef6SPierre Jolivet PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n); 600664c1e85SStefano Zampini /* Prevent from unneeded copies back and forth from the GPU 601664c1e85SStefano Zampini when getting and restoring the submatrix 602664c1e85SStefano Zampini We need a proper GPU code for AIJ * dense in parallel */ 6039566063dSJacob Faibussowitsch PetscCall(MatBoundToCPU(C, &ccpu)); 6049566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, PETSC_TRUE)); 6055ea7661aSPierre Jolivet for (i = 0; i < BN; i += n) { 606a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb)); 607a2748737SPierre Jolivet PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb)); 60887753ddeSHong Zhang 6095ea7661aSPierre Jolivet /* get off processor parts of B needed to complete C=A*B */ 6109566063dSJacob Faibussowitsch PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB)); 6115ea7661aSPierre Jolivet 6125ea7661aSPierre Jolivet /* off-diagonal block of A times nonlocal rows of B */ 6135ea7661aSPierre Jolivet cdense = (Mat_MPIDense *)Cb->data; 6149566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE)); 6159566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(B, &Bb)); 6169566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreSubMatrix(C, &Cb)); 61787753ddeSHong Zhang } 6189566063dSJacob Faibussowitsch PetscCall(MatBindToCPU(C, ccpu)); 61987753ddeSHong Zhang } 6203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6219123193aSHong Zhang } 622cf1a0672SHong Zhang 623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C) 624d71ae5a4SJacob Faibussowitsch { 625cf1a0672SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data; 626*f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data; 627*f4f49eeaSPierre Jolivet Mat_SeqAIJ *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data; 628cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj, *aoi = ao->i, *aoj; 629cf1a0672SHong Zhang PetscScalar *ada, *aoa, *cda = cd->a, *coa = co->a; 630cf1a0672SHong Zhang Mat_SeqAIJ *p_loc, *p_oth; 631cf1a0672SHong Zhang PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj; 63229825010SHong Zhang PetscScalar *pa_loc, *pa_oth, *pa, valtmp, *ca; 63329825010SHong Zhang PetscInt cm = C->rmap->n, anz, pnz; 6346718818eSStefano Zampini Mat_APMPI *ptap; 63580da8df7SHong Zhang PetscScalar *apa_sparse; 636ce496241SStefano Zampini const PetscScalar *dummy; 637cf1a0672SHong Zhang PetscInt *api, *apj, *apJ, i, j, k, row; 63829825010SHong Zhang PetscInt cstart = C->cmap->rstart; 63929825010SHong Zhang PetscInt cdnz, conz, k0, k1, nextp; 640a7c7454dSHong Zhang MPI_Comm comm; 641a7c7454dSHong Zhang PetscMPIInt size; 6421634b032SHong Zhang 6431634b032SHong Zhang PetscFunctionBegin; 6446718818eSStefano Zampini MatCheckProduct(C, 3); 6456718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 64628b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 6479566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 6489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 649aed4548fSBarry Smith PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()"); 650a7c7454dSHong Zhang 65165e4b4d4SStefano Zampini /* flag CPU mask for C */ 65265e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 65365e4b4d4SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 65465e4b4d4SStefano Zampini if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU; 65565e4b4d4SStefano Zampini if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU; 65665e4b4d4SStefano Zampini #endif 65780da8df7SHong Zhang apa_sparse = ptap->apa; 65880da8df7SHong Zhang 659cf1a0672SHong Zhang /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 660cf1a0672SHong Zhang /* update numerical values of P_oth and P_loc */ 6619566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 6629566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc)); 663cf1a0672SHong Zhang 664cf1a0672SHong Zhang /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 665cf1a0672SHong Zhang /* get data from symbolic products */ 666*f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 6679371c9d4SSatish Balay pi_loc = p_loc->i; 6689371c9d4SSatish Balay pj_loc = p_loc->j; 6699371c9d4SSatish Balay pa_loc = p_loc->a; 670a7c7454dSHong Zhang if (size > 1) { 671*f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 6729371c9d4SSatish Balay pi_oth = p_oth->i; 6739371c9d4SSatish Balay pj_oth = p_oth->j; 6749371c9d4SSatish Balay pa_oth = p_oth->a; 67520e3dc75SHong Zhang } else { 6769371c9d4SSatish Balay p_oth = NULL; 6779371c9d4SSatish Balay pi_oth = NULL; 6789371c9d4SSatish Balay pj_oth = NULL; 6799371c9d4SSatish Balay pa_oth = NULL; 680a7c7454dSHong Zhang } 681cf1a0672SHong Zhang 682ce496241SStefano Zampini /* trigger copy to CPU */ 6839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy)); 6849566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy)); 6859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy)); 6869566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy)); 68729825010SHong Zhang api = ptap->api; 68829825010SHong Zhang apj = ptap->apj; 689cf1a0672SHong Zhang for (i = 0; i < cm; i++) { 69029825010SHong Zhang apJ = apj + api[i]; 69129825010SHong Zhang 692cf1a0672SHong Zhang /* diagonal portion of A */ 693cf1a0672SHong Zhang anz = adi[i + 1] - adi[i]; 694cf1a0672SHong Zhang adj = ad->j + adi[i]; 695cf1a0672SHong Zhang ada = ad->a + adi[i]; 696cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 697cf1a0672SHong Zhang row = adj[j]; 698cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 699cf1a0672SHong Zhang pj = pj_loc + pi_loc[row]; 700cf1a0672SHong Zhang pa = pa_loc + pi_loc[row]; 70129825010SHong Zhang /* perform sparse axpy */ 702cf1a0672SHong Zhang valtmp = ada[j]; 70329825010SHong Zhang nextp = 0; 70429825010SHong Zhang for (k = 0; nextp < pnz; k++) { 70529825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 70629825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 70729825010SHong Zhang } 7081634b032SHong Zhang } 7099566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 710cf1a0672SHong Zhang } 7111634b032SHong Zhang 712cf1a0672SHong Zhang /* off-diagonal portion of A */ 713cf1a0672SHong Zhang anz = aoi[i + 1] - aoi[i]; 7148e3a54c0SPierre Jolivet aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]); 7158e3a54c0SPierre Jolivet aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]); 716cf1a0672SHong Zhang for (j = 0; j < anz; j++) { 717cf1a0672SHong Zhang row = aoj[j]; 718cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 719cf1a0672SHong Zhang pj = pj_oth + pi_oth[row]; 720cf1a0672SHong Zhang pa = pa_oth + pi_oth[row]; 72129825010SHong Zhang /* perform sparse axpy */ 722cf1a0672SHong Zhang valtmp = aoa[j]; 72329825010SHong Zhang nextp = 0; 72429825010SHong Zhang for (k = 0; nextp < pnz; k++) { 72529825010SHong Zhang if (apJ[k] == pj[nextp]) { /* column of AP == column of P */ 72629825010SHong Zhang apa_sparse[k] += valtmp * pa[nextp++]; 72729825010SHong Zhang } 728cf1a0672SHong Zhang } 7299566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * pnz)); 730cf1a0672SHong Zhang } 7311634b032SHong Zhang 732cf1a0672SHong Zhang /* set values in C */ 733cf1a0672SHong Zhang cdnz = cd->i[i + 1] - cd->i[i]; 734cf1a0672SHong Zhang conz = co->i[i + 1] - co->i[i]; 7351634b032SHong Zhang 736910cf402Sprj- /* 1st off-diagonal part of C */ 7378e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 738cf1a0672SHong Zhang k = 0; 739cf1a0672SHong Zhang for (k0 = 0; k0 < conz; k0++) { 740cf1a0672SHong Zhang if (apJ[k] >= cstart) break; 74129825010SHong Zhang ca[k0] = apa_sparse[k]; 74229825010SHong Zhang apa_sparse[k] = 0.0; 743cf1a0672SHong Zhang k++; 744cf1a0672SHong Zhang } 7451634b032SHong Zhang 746cf1a0672SHong Zhang /* diagonal part of C */ 747cf1a0672SHong Zhang ca = cda + cd->i[i]; 748cf1a0672SHong Zhang for (k1 = 0; k1 < cdnz; k1++) { 74929825010SHong Zhang ca[k1] = apa_sparse[k]; 75029825010SHong Zhang apa_sparse[k] = 0.0; 751cf1a0672SHong Zhang k++; 752cf1a0672SHong Zhang } 753cf1a0672SHong Zhang 754910cf402Sprj- /* 2nd off-diagonal part of C */ 7558e3a54c0SPierre Jolivet ca = PetscSafePointerPlusOffset(coa, co->i[i]); 756cf1a0672SHong Zhang for (; k0 < conz; k0++) { 75729825010SHong Zhang ca[k0] = apa_sparse[k]; 75829825010SHong Zhang apa_sparse[k] = 0.0; 759cf1a0672SHong Zhang k++; 760cf1a0672SHong Zhang } 761cf1a0672SHong Zhang } 7629566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 7639566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 7643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 765cf1a0672SHong Zhang } 766cf1a0672SHong Zhang 7670fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */ 768d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C) 769d71ae5a4SJacob Faibussowitsch { 770ce94432eSBarry Smith MPI_Comm comm; 771a7c7454dSHong Zhang PetscMPIInt size; 7723cdca5ebSHong Zhang Mat_APMPI *ptap; 7730298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 7746718818eSStefano Zampini Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 775*f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth; 7767dbaa2c6Sandi selinger PetscInt *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz; 777cf1a0672SHong Zhang PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart; 7788c78258cSHong Zhang PetscInt i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1; 779e5ab8c0aSKarl Rupp PetscInt am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20; 780cf1a0672SHong Zhang PetscReal afill; 781b92f168fSBarry Smith MatType mtype; 782cf1a0672SHong Zhang 783cf1a0672SHong Zhang PetscFunctionBegin; 7846718818eSStefano Zampini MatCheckProduct(C, 4); 78528b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 7869566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 7879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 788a7c7454dSHong Zhang 7893cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 7909566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 791cf1a0672SHong Zhang 792cf1a0672SHong Zhang /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 7939566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 79419f0e57aSHong Zhang 795cf1a0672SHong Zhang /* get P_loc by taking all local rows of P */ 7969566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 797cf1a0672SHong Zhang 798*f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 7999371c9d4SSatish Balay pi_loc = p_loc->i; 8009371c9d4SSatish Balay pj_loc = p_loc->j; 801a7c7454dSHong Zhang if (size > 1) { 802*f4f49eeaSPierre Jolivet p_oth = (Mat_SeqAIJ *)ptap->P_oth->data; 8039371c9d4SSatish Balay pi_oth = p_oth->i; 8049371c9d4SSatish Balay pj_oth = p_oth->j; 805968382fdSHong Zhang } else { 80620e3dc75SHong Zhang p_oth = NULL; 8079371c9d4SSatish Balay pi_oth = NULL; 8089371c9d4SSatish Balay pj_oth = NULL; 809a7c7454dSHong Zhang } 810cf1a0672SHong Zhang 811cf1a0672SHong Zhang /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 8129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 813cf1a0672SHong Zhang ptap->api = api; 814cf1a0672SHong Zhang api[0] = 0; 815cf1a0672SHong Zhang 8169566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk)); 817cf1a0672SHong Zhang 818cf1a0672SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 8199566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space)); 820cf1a0672SHong Zhang current_space = free_space; 821d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 822cf1a0672SHong Zhang for (i = 0; i < am; i++) { 823cf1a0672SHong Zhang /* diagonal portion of A */ 824cf1a0672SHong Zhang nzi = adi[i + 1] - adi[i]; 825cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 826cf1a0672SHong Zhang row = *adj++; 827cf1a0672SHong Zhang pnz = pi_loc[row + 1] - pi_loc[row]; 828cf1a0672SHong Zhang Jptr = pj_loc + pi_loc[row]; 8298a210135Sandi selinger /* Expand list if it is not long enough */ 8308328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8318328dd82Sandi selinger lsize = pnz + apnz_max; 8329566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8338a210135Sandi selinger } 834cf1a0672SHong Zhang /* add non-zero cols of P into the sorted linked list lnk */ 8359566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8368a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8378a210135Sandi selinger api[i + 1] = api[i] + apnz; 8388c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 839cf1a0672SHong Zhang } 840cf1a0672SHong Zhang /* off-diagonal portion of A */ 841cf1a0672SHong Zhang nzi = aoi[i + 1] - aoi[i]; 842cf1a0672SHong Zhang for (j = 0; j < nzi; j++) { 843cf1a0672SHong Zhang row = *aoj++; 844cf1a0672SHong Zhang pnz = pi_oth[row + 1] - pi_oth[row]; 845cf1a0672SHong Zhang Jptr = pj_oth + pi_oth[row]; 8468a210135Sandi selinger /* Expand list if it is not long enough */ 8478328dd82Sandi selinger if (pnz + apnz_max > lsize) { 8488328dd82Sandi selinger lsize = pnz + apnz_max; 8499566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk)); 8508a210135Sandi selinger } 8518a210135Sandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 8529566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk)); 8538a210135Sandi selinger apnz = *lnk; /* The first element in the list is the number of items in the list */ 8548a210135Sandi selinger api[i + 1] = api[i] + apnz; 8558c78258cSHong Zhang if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */ 856cf1a0672SHong Zhang } 8578c78258cSHong Zhang 8588c78258cSHong Zhang /* add missing diagonal entry */ 8598c78258cSHong Zhang if (C->force_diagonals) { 8608c78258cSHong Zhang j = i + rstart; /* column index */ 8619566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk)); 8628c78258cSHong Zhang } 8638c78258cSHong Zhang 864f84c536bSHong Zhang apnz = *lnk; 865cf1a0672SHong Zhang api[i + 1] = api[i] + apnz; 8668a210135Sandi selinger if (apnz > apnz_max) apnz_max = apnz; 867cf1a0672SHong Zhang 868cf1a0672SHong Zhang /* if free space is not available, double the total space in the list */ 869cf1a0672SHong Zhang if (current_space->local_remaining < apnz) { 8709566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), ¤t_space)); 871cf1a0672SHong Zhang nspacedouble++; 872cf1a0672SHong Zhang } 873cf1a0672SHong Zhang 874cf1a0672SHong Zhang /* Copy data into free space, then initialize lnk */ 8759566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk)); 8769566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz)); 8772205254eSKarl Rupp 878cf1a0672SHong Zhang current_space->array += apnz; 879cf1a0672SHong Zhang current_space->local_used += apnz; 880cf1a0672SHong Zhang current_space->local_remaining -= apnz; 881cf1a0672SHong Zhang } 882cf1a0672SHong Zhang 883cf1a0672SHong Zhang /* Allocate space for apj, initialize apj, and */ 884cf1a0672SHong Zhang /* destroy list of free space and other temporary array(s) */ 8859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj)); 886cf1a0672SHong Zhang apj = ptap->apj; 8879566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj)); 8889566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 889cf1a0672SHong Zhang 8904222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 8919566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 8929566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 8939566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 8949566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 8959566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 896d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 897cf1a0672SHong Zhang 8984222ddf1SHong Zhang /* malloc apa for assembly C */ 8999566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(apnz_max, &ptap->apa)); 90017f75172Sandi selinger 9019566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 9029566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 9039566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 9049566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 905cf1a0672SHong Zhang 9064222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 9074222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 908cf1a0672SHong Zhang 9094222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 9106718818eSStefano Zampini C->product->data = ptap; 9116718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 912cf1a0672SHong Zhang 913cf1a0672SHong Zhang /* set MatInfo */ 914118727c9SMark F. Adams afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 915cf1a0672SHong Zhang if (afill < 1.0) afill = 1.0; 9164222ddf1SHong Zhang C->info.mallocs = nspacedouble; 9174222ddf1SHong Zhang C->info.fill_ratio_given = fill; 9184222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 919cf1a0672SHong Zhang 920cf1a0672SHong Zhang #if defined(PETSC_USE_INFO) 921cf1a0672SHong Zhang if (api[am]) { 9229566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 9239566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 924cf1a0672SHong Zhang } else { 9259566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 926cf1a0672SHong Zhang } 927cf1a0672SHong Zhang #endif 9283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9291634b032SHong Zhang } 930f96d37fcSHong Zhang 931a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication. */ 932a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the */ 933a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once. */ 934d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out) 935d71ae5a4SJacob Faibussowitsch { 936a9d7e0ccSandi selinger int i = 0, j = 0, k = 0, l = 0; 937a9d7e0ccSandi selinger 938a9d7e0ccSandi selinger /* Traverse all three arrays */ 939a9d7e0ccSandi selinger while (i < size1 && j < size2 && k < size3) { 940a9d7e0ccSandi selinger if (in1[i] < in2[j] && in1[i] < in3[k]) { 941a9d7e0ccSandi selinger out[l++] = in1[i++]; 9429371c9d4SSatish Balay } else if (in2[j] < in1[i] && in2[j] < in3[k]) { 943a9d7e0ccSandi selinger out[l++] = in2[j++]; 9449371c9d4SSatish Balay } else if (in3[k] < in1[i] && in3[k] < in2[j]) { 945a9d7e0ccSandi selinger out[l++] = in3[k++]; 9469371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] < in3[k]) { 947a9d7e0ccSandi selinger out[l++] = in1[i]; 948a9d7e0ccSandi selinger i++, j++; 9499371c9d4SSatish Balay } else if (in1[i] == in3[k] && in1[i] < in2[j]) { 950a9d7e0ccSandi selinger out[l++] = in1[i]; 951a9d7e0ccSandi selinger i++, k++; 9529371c9d4SSatish Balay } else if (in3[k] == in2[j] && in2[j] < in1[i]) { 953a9d7e0ccSandi selinger out[l++] = in2[j]; 954a9d7e0ccSandi selinger k++, j++; 9559371c9d4SSatish Balay } else if (in1[i] == in2[j] && in1[i] == in3[k]) { 956a9d7e0ccSandi selinger out[l++] = in1[i]; 957a9d7e0ccSandi selinger i++, j++, k++; 958a9d7e0ccSandi selinger } 959a9d7e0ccSandi selinger } 960a9d7e0ccSandi selinger 961a9d7e0ccSandi selinger /* Traverse two remaining arrays */ 962a9d7e0ccSandi selinger while (i < size1 && j < size2) { 963a9d7e0ccSandi selinger if (in1[i] < in2[j]) { 964a9d7e0ccSandi selinger out[l++] = in1[i++]; 9659371c9d4SSatish Balay } else if (in1[i] > in2[j]) { 966a9d7e0ccSandi selinger out[l++] = in2[j++]; 9679371c9d4SSatish Balay } else { 968a9d7e0ccSandi selinger out[l++] = in1[i]; 969a9d7e0ccSandi selinger i++, j++; 970a9d7e0ccSandi selinger } 971a9d7e0ccSandi selinger } 972a9d7e0ccSandi selinger 973a9d7e0ccSandi selinger while (i < size1 && k < size3) { 974a9d7e0ccSandi selinger if (in1[i] < in3[k]) { 975a9d7e0ccSandi selinger out[l++] = in1[i++]; 9769371c9d4SSatish Balay } else if (in1[i] > in3[k]) { 977a9d7e0ccSandi selinger out[l++] = in3[k++]; 9789371c9d4SSatish Balay } else { 979a9d7e0ccSandi selinger out[l++] = in1[i]; 980a9d7e0ccSandi selinger i++, k++; 981a9d7e0ccSandi selinger } 982a9d7e0ccSandi selinger } 983a9d7e0ccSandi selinger 984a9d7e0ccSandi selinger while (k < size3 && j < size2) { 985a9d7e0ccSandi selinger if (in3[k] < in2[j]) { 986a9d7e0ccSandi selinger out[l++] = in3[k++]; 9879371c9d4SSatish Balay } else if (in3[k] > in2[j]) { 988a9d7e0ccSandi selinger out[l++] = in2[j++]; 9899371c9d4SSatish Balay } else { 990a9d7e0ccSandi selinger out[l++] = in3[k]; 991a9d7e0ccSandi selinger k++, j++; 992a9d7e0ccSandi selinger } 993a9d7e0ccSandi selinger } 994a9d7e0ccSandi selinger 995a9d7e0ccSandi selinger /* Traverse one remaining array */ 996a9d7e0ccSandi selinger while (i < size1) out[l++] = in1[i++]; 997a9d7e0ccSandi selinger while (j < size2) out[l++] = in2[j++]; 998a9d7e0ccSandi selinger while (k < size3) out[l++] = in3[k++]; 999a9d7e0ccSandi selinger 1000a9d7e0ccSandi selinger *size4 = l; 1001a9d7e0ccSandi selinger } 1002a9d7e0ccSandi selinger 100373b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and */ 100473b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential) */ 100573b67375Sandi selinger /* matrix-matrix multiplications. */ 1006d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C) 1007d71ae5a4SJacob Faibussowitsch { 1008a9d7e0ccSandi selinger MPI_Comm comm; 1009a9d7e0ccSandi selinger PetscMPIInt size; 10103cdca5ebSHong Zhang Mat_APMPI *ptap; 1011a9d7e0ccSandi selinger PetscFreeSpaceList free_space_diag = NULL, current_space = NULL; 1012a9d7e0ccSandi selinger Mat_MPIAIJ *a = (Mat_MPIAIJ *)A->data; 1013*f4f49eeaSPierre Jolivet Mat_SeqAIJ *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc; 1014a9d7e0ccSandi selinger Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1015a9d7e0ccSandi selinger Mat_SeqAIJ *adpd_seq, *p_off, *aopoth_seq; 1016a9d7e0ccSandi selinger PetscInt adponz, adpdnz; 10177dbaa2c6Sandi selinger PetscInt *pi_loc, *dnz, *onz; 1018a9d7e0ccSandi selinger PetscInt *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart; 10199371c9d4SSatish Balay PetscInt *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj; 1020a016958eSandi selinger PetscInt am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend; 1021a9d7e0ccSandi selinger PetscBT lnkbt; 1022a9d7e0ccSandi selinger PetscReal afill; 1023a9d7e0ccSandi selinger PetscMPIInt rank; 1024a9d7e0ccSandi selinger Mat adpd, aopoth; 1025b92f168fSBarry Smith MatType mtype; 1026e83e5f86SFande Kong const char *prefix; 1027a9d7e0ccSandi selinger 1028a9d7e0ccSandi selinger PetscFunctionBegin; 10296718818eSStefano Zampini MatCheckProduct(C, 4); 103028b400f6SJacob Faibussowitsch PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 10319566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 10329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 10339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 10349566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend)); 1035a9d7e0ccSandi selinger 10363cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 10379566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1038a9d7e0ccSandi selinger 1039a9d7e0ccSandi selinger /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 10409566063dSJacob Faibussowitsch PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth)); 1041a9d7e0ccSandi selinger 1042a9d7e0ccSandi selinger /* get P_loc by taking all local rows of P */ 10439566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc)); 1044a9d7e0ccSandi selinger 1045*f4f49eeaSPierre Jolivet p_loc = (Mat_SeqAIJ *)ptap->P_loc->data; 1046a9d7e0ccSandi selinger pi_loc = p_loc->i; 1047a9d7e0ccSandi selinger 1048a9d7e0ccSandi selinger /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */ 10499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &api)); 10509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &adpoi)); 1051a9d7e0ccSandi selinger 1052a9d7e0ccSandi selinger adpoi[0] = 0; 1053a9d7e0ccSandi selinger ptap->api = api; 1054a9d7e0ccSandi selinger api[0] = 0; 1055a9d7e0ccSandi selinger 1056a9d7e0ccSandi selinger /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */ 10579566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt)); 1058d0609cedSBarry Smith MatPreallocateBegin(comm, am, pn, dnz, onz); 1059a9d7e0ccSandi selinger 1060a9d7e0ccSandi selinger /* Symbolic calc of A_loc_diag * P_loc_diag */ 10619566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10629566063dSJacob Faibussowitsch PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd)); 10639566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 10649566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(adpd, prefix)); 10659566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_")); 10664222ddf1SHong Zhang 10679566063dSJacob Faibussowitsch PetscCall(MatProductSetType(adpd, MATPRODUCT_AB)); 10689566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(adpd, "sorted")); 10699566063dSJacob Faibussowitsch PetscCall(MatProductSetFill(adpd, fill)); 10709566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions(adpd)); 10718c78258cSHong Zhang 10728c78258cSHong Zhang adpd->force_diagonals = C->force_diagonals; 10739566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic(adpd)); 10744222ddf1SHong Zhang 1075a9d7e0ccSandi selinger adpd_seq = (Mat_SeqAIJ *)((adpd)->data); 10769371c9d4SSatish Balay adpdi = adpd_seq->i; 10779371c9d4SSatish Balay adpdj = adpd_seq->j; 1078*f4f49eeaSPierre Jolivet p_off = (Mat_SeqAIJ *)p->B->data; 10799371c9d4SSatish Balay poff_i = p_off->i; 10809371c9d4SSatish Balay poff_j = p_off->j; 1081a9d7e0ccSandi selinger 108273b67375Sandi selinger /* j_temp stores indices of a result row before they are added to the linked list */ 10839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pN + 2, &j_temp)); 1084a9d7e0ccSandi selinger 1085a9d7e0ccSandi selinger /* Symbolic calc of the A_diag * p_loc_off */ 1086a9d7e0ccSandi selinger /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 10879566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag)); 1088a9d7e0ccSandi selinger current_space = free_space_diag; 1089a9d7e0ccSandi selinger 1090a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1091a9d7e0ccSandi selinger /* A_diag * P_loc_off */ 1092a9d7e0ccSandi selinger nzi = adi[i + 1] - adi[i]; 1093a9d7e0ccSandi selinger for (j = 0; j < nzi; j++) { 1094a9d7e0ccSandi selinger row = *adj++; 1095a9d7e0ccSandi selinger pnz = poff_i[row + 1] - poff_i[row]; 1096a9d7e0ccSandi selinger Jptr = poff_j + poff_i[row]; 1097ad540459SPierre Jolivet for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]]; 1098a9d7e0ccSandi selinger /* add non-zero cols of P into the sorted linked list lnk */ 10999566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt)); 1100a9d7e0ccSandi selinger } 1101a9d7e0ccSandi selinger 1102a9d7e0ccSandi selinger adponz = lnk[0]; 1103a9d7e0ccSandi selinger adpoi[i + 1] = adpoi[i] + adponz; 1104a9d7e0ccSandi selinger 1105a9d7e0ccSandi selinger /* if free space is not available, double the total space in the list */ 1106a9d7e0ccSandi selinger if (current_space->local_remaining < adponz) { 11079566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), ¤t_space)); 1108a9d7e0ccSandi selinger nspacedouble++; 1109a9d7e0ccSandi selinger } 1110a9d7e0ccSandi selinger 1111a9d7e0ccSandi selinger /* Copy data into free space, then initialize lnk */ 11129566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt)); 1113a9d7e0ccSandi selinger 1114a9d7e0ccSandi selinger current_space->array += adponz; 1115a9d7e0ccSandi selinger current_space->local_used += adponz; 1116a9d7e0ccSandi selinger current_space->local_remaining -= adponz; 1117a9d7e0ccSandi selinger } 1118a9d7e0ccSandi selinger 1119a9d7e0ccSandi selinger /* Symbolic calc of A_off * P_oth */ 11209566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(a->B, prefix)); 11219566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_")); 11229566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth)); 11239566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth)); 1124a9d7e0ccSandi selinger aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data); 11259371c9d4SSatish Balay aopothi = aopoth_seq->i; 11269371c9d4SSatish Balay aopothj = aopoth_seq->j; 1127a9d7e0ccSandi selinger 1128a9d7e0ccSandi selinger /* Allocate space for apj, adpj, aopj, ... */ 1129a9d7e0ccSandi selinger /* destroy lists of free space and other temporary array(s) */ 1130a9d7e0ccSandi selinger 11319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am] + 2, &ptap->apj)); 11329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(adpoi[am] + 2, &adpoj)); 1133a9d7e0ccSandi selinger 1134a9d7e0ccSandi selinger /* Copy from linked list to j-array */ 11359566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj)); 11369566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 1137a9d7e0ccSandi selinger 1138a9d7e0ccSandi selinger adpoJ = adpoj; 1139a9d7e0ccSandi selinger adpdJ = adpdj; 1140a9d7e0ccSandi selinger aopJ = aopothj; 1141a9d7e0ccSandi selinger apj = ptap->apj; 1142a9d7e0ccSandi selinger apJ = apj; /* still empty */ 1143a9d7e0ccSandi selinger 1144a9d7e0ccSandi selinger /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */ 1145a9d7e0ccSandi selinger /* A_diag * P_loc_diag to get A*P */ 1146a9d7e0ccSandi selinger for (i = 0; i < am; i++) { 1147a9d7e0ccSandi selinger aopnz = aopothi[i + 1] - aopothi[i]; 1148a9d7e0ccSandi selinger adponz = adpoi[i + 1] - adpoi[i]; 1149a9d7e0ccSandi selinger adpdnz = adpdi[i + 1] - adpdi[i]; 1150a9d7e0ccSandi selinger 1151a9d7e0ccSandi selinger /* Correct indices from A_diag*P_diag */ 1152ad540459SPierre Jolivet for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart; 1153a9d7e0ccSandi selinger /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */ 1154a9d7e0ccSandi selinger Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ); 11559566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz)); 1156a9d7e0ccSandi selinger 1157a9d7e0ccSandi selinger aopJ += aopnz; 1158a9d7e0ccSandi selinger adpoJ += adponz; 1159a9d7e0ccSandi selinger adpdJ += adpdnz; 1160a9d7e0ccSandi selinger apJ += apnz; 1161a9d7e0ccSandi selinger api[i + 1] = api[i] + apnz; 1162a9d7e0ccSandi selinger } 1163a9d7e0ccSandi selinger 1164a9d7e0ccSandi selinger /* malloc apa to store dense row A[i,:]*P */ 11659566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(pN + 2, &ptap->apa)); 1166a9d7e0ccSandi selinger 11674222ddf1SHong Zhang /* create and assemble symbolic parallel matrix C */ 11689566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE)); 11699566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, P)); 11709566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 11719566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 11729566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1173d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 117417f75172Sandi selinger 11759566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api)); 11769566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 11779566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 11789566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 117917f75172Sandi selinger 11804222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 11814222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AB; 1182a9d7e0ccSandi selinger 11834222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 11846718818eSStefano Zampini C->product->data = ptap; 11856718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_MatMatMult; 1186a9d7e0ccSandi selinger 1187a9d7e0ccSandi selinger /* set MatInfo */ 118873b67375Sandi selinger afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5; 118973b67375Sandi selinger if (afill < 1.0) afill = 1.0; 11904222ddf1SHong Zhang C->info.mallocs = nspacedouble; 11914222ddf1SHong Zhang C->info.fill_ratio_given = fill; 11924222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1193a9d7e0ccSandi selinger 1194a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO) 1195a9d7e0ccSandi selinger if (api[am]) { 11969566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 11979566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1198a9d7e0ccSandi selinger } else { 11999566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1200a9d7e0ccSandi selinger } 1201a9d7e0ccSandi selinger #endif 1202a9d7e0ccSandi selinger 12039566063dSJacob Faibussowitsch PetscCall(MatDestroy(&aopoth)); 12049566063dSJacob Faibussowitsch PetscCall(MatDestroy(&adpd)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(j_temp)); 12069566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoj)); 12079566063dSJacob Faibussowitsch PetscCall(PetscFree(adpoi)); 12083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1209a9d7e0ccSandi selinger } 1210a9d7e0ccSandi selinger 1211c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */ 1212d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C) 1213d71ae5a4SJacob Faibussowitsch { 12146718818eSStefano Zampini Mat_APMPI *ptap; 121560552ceaSHong Zhang Mat Pt; 1216c216dbf3SHong Zhang 1217c216dbf3SHong Zhang PetscFunctionBegin; 12186718818eSStefano Zampini MatCheckProduct(C, 3); 12196718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 122028b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 122128b400f6SJacob Faibussowitsch PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 122260552ceaSHong Zhang 122360552ceaSHong Zhang Pt = ptap->Pt; 12241cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(P, Pt)); 12259566063dSJacob Faibussowitsch PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt)); 12269566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C)); 12273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1228f96d37fcSHong Zhang } 1229f96d37fcSHong Zhang 1230c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */ 1231d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C) 1232d71ae5a4SJacob Faibussowitsch { 12333cdca5ebSHong Zhang Mat_APMPI *ptap; 12346718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1235912837bbSHong Zhang MPI_Comm comm; 1236912837bbSHong Zhang PetscMPIInt size, rank; 1237912837bbSHong Zhang PetscFreeSpaceList free_space = NULL, current_space = NULL; 12384ede91e3SHong Zhang PetscInt pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n; 123969be949aSStefano Zampini PetscInt *lnk, i, k, nsend, rstart; 1240912837bbSHong Zhang PetscBT lnkbt; 1241ec4bef21SJose E. Roman PetscMPIInt tagi, tagj, *len_si, *len_s, *len_ri, nrecv; 1242ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted = 0; 12438c78258cSHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols; 12447f3e1f30SHong Zhang PetscInt len, proc, *dnz, *onz, *owners, nzi; 1245912837bbSHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1246912837bbSHong Zhang MPI_Request *swaits, *rwaits; 1247912837bbSHong Zhang MPI_Status *sstatus, rstatus; 1248912837bbSHong Zhang PetscLayout rowmap; 1249912837bbSHong Zhang PetscInt *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */ 1250912837bbSHong Zhang PetscMPIInt *len_r, *id_r; /* array of length of comm->size, store send/recv matrix values */ 12517f3e1f30SHong Zhang PetscInt *Jptr, *prmap = p->garray, con, j, Crmax; 12524ede91e3SHong Zhang Mat_SeqAIJ *a_loc, *c_loc, *c_oth; 1253eec179cfSJacob Faibussowitsch PetscHMapI ta; 1254b92f168fSBarry Smith MatType mtype; 1255e83e5f86SFande Kong const char *prefix; 1256912837bbSHong Zhang 1257912837bbSHong Zhang PetscFunctionBegin; 12589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 12599566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 12609566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1261912837bbSHong Zhang 12624222ddf1SHong Zhang /* create symbolic parallel matrix C */ 12639566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 12649566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 1265912837bbSHong Zhang 12664222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable; 1267912837bbSHong Zhang 12683cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 12699566063dSJacob Faibussowitsch PetscCall(PetscNew(&ptap)); 1270912837bbSHong Zhang 1271912837bbSHong Zhang /* (0) compute Rd = Pd^T, Ro = Po^T */ 1272acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd)); 1273acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro)); 1274912837bbSHong Zhang 1275669e9c86SHong Zhang /* (1) compute symbolic A_loc */ 12769566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc)); 1277912837bbSHong Zhang 12784ede91e3SHong Zhang /* (2-1) compute symbolic C_oth = Ro*A_loc */ 12799566063dSJacob Faibussowitsch PetscCall(MatGetOptionsPrefix(A, &prefix)); 12809566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix)); 12819566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_")); 12829566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth)); 12839566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth)); 1284912837bbSHong Zhang 1285912837bbSHong Zhang /* (3) send coj of C_oth to other processors */ 1286912837bbSHong Zhang /* determine row ownership */ 12879566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &rowmap)); 1288912837bbSHong Zhang rowmap->n = pn; 1289912837bbSHong Zhang rowmap->bs = 1; 12909566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(rowmap)); 1291912837bbSHong Zhang owners = rowmap->range; 1292912837bbSHong Zhang 1293912837bbSHong Zhang /* determine the number of messages to send, their lengths */ 12949566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 2, &owners_co)); 12959566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_s, size)); 12969566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(len_si, size)); 1297912837bbSHong Zhang 1298912837bbSHong Zhang c_oth = (Mat_SeqAIJ *)ptap->C_oth->data; 12999371c9d4SSatish Balay coi = c_oth->i; 13009371c9d4SSatish Balay coj = c_oth->j; 1301912837bbSHong Zhang con = ptap->C_oth->rmap->n; 1302912837bbSHong Zhang proc = 0; 1303912837bbSHong Zhang for (i = 0; i < con; i++) { 1304912837bbSHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 13057f3e1f30SHong Zhang len_si[proc]++; /* num of rows in Co(=Pt*A) to be sent to [proc] */ 1306912837bbSHong Zhang len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */ 1307912837bbSHong Zhang } 1308912837bbSHong Zhang 1309912837bbSHong Zhang len = 0; /* max length of buf_si[], see (4) */ 1310912837bbSHong Zhang owners_co[0] = 0; 1311912837bbSHong Zhang nsend = 0; 1312912837bbSHong Zhang for (proc = 0; proc < size; proc++) { 1313912837bbSHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1314912837bbSHong Zhang if (len_s[proc]) { 1315912837bbSHong Zhang nsend++; 1316912837bbSHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */ 1317912837bbSHong Zhang len += len_si[proc]; 1318912837bbSHong Zhang } 1319912837bbSHong Zhang } 1320912837bbSHong Zhang 1321912837bbSHong Zhang /* determine the number and length of messages to receive for coi and coj */ 13229566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv)); 13239566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri)); 1324912837bbSHong Zhang 1325912837bbSHong Zhang /* post the Irecv and Isend of coj */ 13269566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 13279566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits)); 13289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsend + 1, &swaits)); 1329912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1330912837bbSHong Zhang if (!len_s[proc]) continue; 1331912837bbSHong Zhang i = owners_co[proc]; 13329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1333912837bbSHong Zhang k++; 1334912837bbSHong Zhang } 1335912837bbSHong Zhang 13367f3e1f30SHong Zhang /* (2-2) compute symbolic C_loc = Rd*A_loc */ 13379566063dSJacob Faibussowitsch PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix)); 13389566063dSJacob Faibussowitsch PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_")); 13399566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc)); 13409566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc)); 1341912837bbSHong Zhang c_loc = (Mat_SeqAIJ *)ptap->C_loc->data; 1342912837bbSHong Zhang 1343912837bbSHong Zhang /* receives coj are complete */ 134448a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13459566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13469566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1347912837bbSHong Zhang 1348912837bbSHong Zhang /* add received column indices into ta to update Crmax */ 1349*f4f49eeaSPierre Jolivet a_loc = (Mat_SeqAIJ *)ptap->A_loc->data; 1350669e9c86SHong Zhang 1351669e9c86SHong Zhang /* create and initialize a linked list */ 1352eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */ 13534ede91e3SHong Zhang MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta); 1354669e9c86SHong Zhang 1355912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1356912837bbSHong Zhang Jptr = buf_rj[k]; 1357c76ffc5fSJacob Faibussowitsch for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 1358912837bbSHong Zhang } 1359eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 1360eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 1361912837bbSHong Zhang 1362912837bbSHong Zhang /* (4) send and recv coi */ 13639566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 13649566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits)); 13659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 1366912837bbSHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1367912837bbSHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1368912837bbSHong Zhang if (!len_s[proc]) continue; 1369912837bbSHong Zhang /* form outgoing message for i-structure: 1370912837bbSHong Zhang buf_si[0]: nrows to be sent 1371912837bbSHong Zhang [1:nrows]: row index (global) 1372912837bbSHong Zhang [nrows+1:2*nrows+1]: i-structure index 1373912837bbSHong Zhang */ 1374912837bbSHong Zhang nrows = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */ 1375912837bbSHong Zhang buf_si_i = buf_si + nrows + 1; 1376912837bbSHong Zhang buf_si[0] = nrows; 1377912837bbSHong Zhang buf_si_i[0] = 0; 1378912837bbSHong Zhang nrows = 0; 1379912837bbSHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1380912837bbSHong Zhang nzi = coi[i + 1] - coi[i]; 1381912837bbSHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1382912837bbSHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1383912837bbSHong Zhang nrows++; 1384912837bbSHong Zhang } 13859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1386912837bbSHong Zhang k++; 1387912837bbSHong Zhang buf_si += len_si[proc]; 1388912837bbSHong Zhang } 138948a46eb9SPierre Jolivet for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus)); 13909566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 13919566063dSJacob Faibussowitsch if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus)); 1392912837bbSHong Zhang 13939566063dSJacob Faibussowitsch PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co)); 13949566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 13959566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 13969566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1397912837bbSHong Zhang 13984222ddf1SHong Zhang /* (5) compute the local portion of C */ 1399bbea24aaSStefano Zampini /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */ 14009566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(Crmax, &free_space)); 1401912837bbSHong Zhang current_space = free_space; 1402912837bbSHong Zhang 14039566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci)); 1404912837bbSHong Zhang for (k = 0; k < nrecv; k++) { 1405912837bbSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1406912837bbSHong Zhang nrows = *buf_ri_k[k]; 1407912837bbSHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1408a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1409912837bbSHong Zhang } 1410912837bbSHong Zhang 1411d0609cedSBarry Smith MatPreallocateBegin(comm, pn, an, dnz, onz); 14129566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt)); 14138c78258cSHong Zhang for (i = 0; i < pn; i++) { /* for each local row of C */ 14144222ddf1SHong Zhang /* add C_loc into C */ 1415912837bbSHong Zhang nzi = c_loc->i[i + 1] - c_loc->i[i]; 1416912837bbSHong Zhang Jptr = c_loc->j + c_loc->i[i]; 14179566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 1418912837bbSHong Zhang 1419912837bbSHong Zhang /* add received col data into lnk */ 1420912837bbSHong Zhang for (k = 0; k < nrecv; k++) { /* k-th received message */ 1421912837bbSHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1422912837bbSHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1423912837bbSHong Zhang Jptr = buf_rj[k] + *nextci[k]; 14249566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt)); 14259371c9d4SSatish Balay nextrow[k]++; 14269371c9d4SSatish Balay nextci[k]++; 1427912837bbSHong Zhang } 1428912837bbSHong Zhang } 14298c78258cSHong Zhang 14308c78258cSHong Zhang /* add missing diagonal entry */ 14318c78258cSHong Zhang if (C->force_diagonals) { 14328c78258cSHong Zhang k = i + owners[rank]; /* column index */ 14339566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt)); 14348c78258cSHong Zhang } 14358c78258cSHong Zhang 1436912837bbSHong Zhang nzi = lnk[0]; 1437912837bbSHong Zhang 1438912837bbSHong Zhang /* copy data into free space, then initialize lnk */ 14399566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt)); 14409566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz)); 1441912837bbSHong Zhang } 14429566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 14439566063dSJacob Faibussowitsch PetscCall(PetscLLDestroy(lnk, lnkbt)); 14449566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceDestroy(free_space)); 1445912837bbSHong Zhang 1446912837bbSHong Zhang /* local sizes and preallocation */ 14479566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE)); 14489566063dSJacob Faibussowitsch if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs)); 14499566063dSJacob Faibussowitsch if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs)); 14509566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 1451d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 1452912837bbSHong Zhang 145369be949aSStefano Zampini /* add C_loc and C_oth to C */ 14549566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, NULL)); 145569be949aSStefano Zampini for (i = 0; i < pn; i++) { 14568c78258cSHong Zhang ncols = c_loc->i[i + 1] - c_loc->i[i]; 14578c78258cSHong Zhang cols = c_loc->j + c_loc->i[i]; 14588c78258cSHong Zhang row = rstart + i; 14599566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 14608c78258cSHong Zhang 146148a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES)); 146269be949aSStefano Zampini } 146369be949aSStefano Zampini for (i = 0; i < con; i++) { 14648c78258cSHong Zhang ncols = c_oth->i[i + 1] - c_oth->i[i]; 14658c78258cSHong Zhang cols = c_oth->j + c_oth->i[i]; 14668c78258cSHong Zhang row = prmap[i]; 14679566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES)); 146869be949aSStefano Zampini } 14699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 14709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 14719566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 147269be949aSStefano Zampini 1473912837bbSHong Zhang /* members in merge */ 14749566063dSJacob Faibussowitsch PetscCall(PetscFree(id_r)); 14759566063dSJacob Faibussowitsch PetscCall(PetscFree(len_r)); 14769566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri[0])); 14779566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_ri)); 14789566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj[0])); 14799566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_rj)); 14809566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&rowmap)); 1481912837bbSHong Zhang 14824222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 14836718818eSStefano Zampini C->product->data = ptap; 14846718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 14853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1486912837bbSHong Zhang } 1487912837bbSHong Zhang 1488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C) 1489d71ae5a4SJacob Faibussowitsch { 14906718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1491669e9c86SHong Zhang Mat_SeqAIJ *c_seq; 14926718818eSStefano Zampini Mat_APMPI *ptap; 1493669e9c86SHong Zhang Mat A_loc, C_loc, C_oth; 1494912837bbSHong Zhang PetscInt i, rstart, rend, cm, ncols, row; 1495912837bbSHong Zhang const PetscInt *cols; 1496912837bbSHong Zhang const PetscScalar *vals; 1497912837bbSHong Zhang 1498912837bbSHong Zhang PetscFunctionBegin; 14996718818eSStefano Zampini MatCheckProduct(C, 3); 15006718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 150128b400f6SJacob Faibussowitsch PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data"); 150228b400f6SJacob Faibussowitsch PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15039566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(C)); 1504912837bbSHong Zhang 1505669e9c86SHong Zhang /* These matrices are obtained in MatTransposeMatMultSymbolic() */ 1506669e9c86SHong Zhang /* 1) get R = Pd^T, Ro = Po^T */ 15071cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd)); 1508acd337a6SBarry Smith PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd)); 15091cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro)); 1510acd337a6SBarry Smith PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro)); 1511669e9c86SHong Zhang 1512669e9c86SHong Zhang /* 2) compute numeric A_loc */ 15139566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc)); 1514912837bbSHong Zhang 1515669e9c86SHong Zhang /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */ 15164ede91e3SHong Zhang A_loc = ptap->A_loc; 1517*f4f49eeaSPierre Jolivet PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc)); 1518*f4f49eeaSPierre Jolivet PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth)); 1519912837bbSHong Zhang C_loc = ptap->C_loc; 1520912837bbSHong Zhang C_oth = ptap->C_oth; 1521912837bbSHong Zhang 152269be949aSStefano Zampini /* add C_loc and C_oth to C */ 15239566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(C, &rstart, &rend)); 1524912837bbSHong Zhang 1525912837bbSHong Zhang /* C_loc -> C */ 1526912837bbSHong Zhang cm = C_loc->rmap->N; 1527912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_loc->data; 1528912837bbSHong Zhang cols = c_seq->j; 1529912837bbSHong Zhang vals = c_seq->a; 1530912837bbSHong Zhang for (i = 0; i < cm; i++) { 1531912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1532912837bbSHong Zhang row = rstart + i; 15339566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15349371c9d4SSatish Balay cols += ncols; 15359371c9d4SSatish Balay vals += ncols; 1536912837bbSHong Zhang } 1537912837bbSHong Zhang 1538912837bbSHong Zhang /* Co -> C, off-processor part */ 1539912837bbSHong Zhang cm = C_oth->rmap->N; 1540912837bbSHong Zhang c_seq = (Mat_SeqAIJ *)C_oth->data; 1541912837bbSHong Zhang cols = c_seq->j; 1542912837bbSHong Zhang vals = c_seq->a; 1543912837bbSHong Zhang for (i = 0; i < cm; i++) { 1544912837bbSHong Zhang ncols = c_seq->i[i + 1] - c_seq->i[i]; 1545912837bbSHong Zhang row = p->garray[i]; 15469566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES)); 15479371c9d4SSatish Balay cols += ncols; 15489371c9d4SSatish Balay vals += ncols; 1549912837bbSHong Zhang } 15509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 15519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 15529566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 15533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1554912837bbSHong Zhang } 1555912837bbSHong Zhang 1556d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C) 1557d71ae5a4SJacob Faibussowitsch { 1558d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 15596718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data; 1560*f4f49eeaSPierre Jolivet Mat_SeqAIJ *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data; 15611cdffd5eSHong Zhang Mat_APMPI *ap; 1562e745005bSHong Zhang PetscInt *adj; 1563e745005bSHong Zhang PetscInt i, j, k, anz, pnz, row, *cj, nexta; 1564e745005bSHong Zhang MatScalar *ada, *ca, valtmp; 1565d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n; 1566ce94432eSBarry Smith MPI_Comm comm; 1567d6ab1dc0SHong Zhang PetscMPIInt size, rank, taga, *len_s; 1568d6ab1dc0SHong Zhang PetscInt *owners, proc, nrows, **buf_ri_k, **nextrow, **nextci; 1569d6ab1dc0SHong Zhang PetscInt **buf_ri, **buf_rj; 1570d6ab1dc0SHong Zhang PetscInt cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */ 1571d6ab1dc0SHong Zhang MPI_Request *s_waits, *r_waits; 1572d6ab1dc0SHong Zhang MPI_Status *status; 1573d6ab1dc0SHong Zhang MatScalar **abuf_r, *ba_i, *pA, *coa, *ba; 1574ce496241SStefano Zampini const PetscScalar *dummy; 15754e201bd7SHong Zhang PetscInt *ai, *aj, *coi, *coj, *poJ, *pdJ; 1576d6ab1dc0SHong Zhang Mat A_loc; 1577d6ab1dc0SHong Zhang Mat_SeqAIJ *a_loc; 1578d6ab1dc0SHong Zhang 1579d6ab1dc0SHong Zhang PetscFunctionBegin; 15806718818eSStefano Zampini MatCheckProduct(C, 3); 15811cdffd5eSHong Zhang ap = (Mat_APMPI *)C->product->data; 15821cdffd5eSHong Zhang PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data"); 15831cdffd5eSHong Zhang PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()"); 15849566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 15859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 15869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1587d6ab1dc0SHong Zhang 15881cdffd5eSHong Zhang merge = ap->merge; 1589d6ab1dc0SHong Zhang 1590e745005bSHong Zhang /* 2) compute numeric C_seq = P_loc^T*A_loc */ 1591d6ab1dc0SHong Zhang /* get data from symbolic products */ 15929371c9d4SSatish Balay coi = merge->coi; 15939371c9d4SSatish Balay coj = merge->coj; 15949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(coi[pon] + 1, &coa)); 15959371c9d4SSatish Balay bi = merge->bi; 15969371c9d4SSatish Balay bj = merge->bj; 1597d6ab1dc0SHong Zhang owners = merge->rowmap->range; 15989566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bi[cm] + 1, &ba)); 1599d6ab1dc0SHong Zhang 1600d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 16011cdffd5eSHong Zhang A_loc = ap->A_loc; 16029566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc)); 1603d6ab1dc0SHong Zhang a_loc = (Mat_SeqAIJ *)(A_loc)->data; 1604d6ab1dc0SHong Zhang ai = a_loc->i; 1605d6ab1dc0SHong Zhang aj = a_loc->j; 1606d6ab1dc0SHong Zhang 1607ce496241SStefano Zampini /* trigger copy to CPU */ 16089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy)); 16099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy)); 16109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy)); 16119566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy)); 1612d6ab1dc0SHong Zhang for (i = 0; i < am; i++) { 1613d6ab1dc0SHong Zhang anz = ai[i + 1] - ai[i]; 1614d6ab1dc0SHong Zhang adj = aj + ai[i]; 1615d6ab1dc0SHong Zhang ada = a_loc->a + ai[i]; 1616d6ab1dc0SHong Zhang 1617d6ab1dc0SHong Zhang /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */ 1618d6ab1dc0SHong Zhang /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */ 1619d6ab1dc0SHong Zhang pnz = po->i[i + 1] - po->i[i]; 1620d6ab1dc0SHong Zhang poJ = po->j + po->i[i]; 1621d6ab1dc0SHong Zhang pA = po->a + po->i[i]; 1622d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1623d6ab1dc0SHong Zhang row = poJ[j]; 1624d6ab1dc0SHong Zhang cj = coj + coi[row]; 1625d6ab1dc0SHong Zhang ca = coa + coi[row]; 1626e745005bSHong Zhang /* perform sparse axpy */ 1627e745005bSHong Zhang nexta = 0; 1628d6ab1dc0SHong Zhang valtmp = pA[j]; 1629e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1630e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1631e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1632e745005bSHong Zhang nexta++; 1633d6ab1dc0SHong Zhang } 1634e745005bSHong Zhang } 16359566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1636d6ab1dc0SHong Zhang } 1637d6ab1dc0SHong Zhang 1638d6ab1dc0SHong Zhang /* put the value into Cd (diagonal part) */ 1639d6ab1dc0SHong Zhang pnz = pd->i[i + 1] - pd->i[i]; 1640d6ab1dc0SHong Zhang pdJ = pd->j + pd->i[i]; 1641d6ab1dc0SHong Zhang pA = pd->a + pd->i[i]; 1642d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1643d6ab1dc0SHong Zhang row = pdJ[j]; 1644d6ab1dc0SHong Zhang cj = bj + bi[row]; 1645d6ab1dc0SHong Zhang ca = ba + bi[row]; 1646e745005bSHong Zhang /* perform sparse axpy */ 1647e745005bSHong Zhang nexta = 0; 1648d6ab1dc0SHong Zhang valtmp = pA[j]; 1649e745005bSHong Zhang for (k = 0; nexta < anz; k++) { 1650e745005bSHong Zhang if (cj[k] == adj[nexta]) { 1651e745005bSHong Zhang ca[k] += valtmp * ada[nexta]; 1652e745005bSHong Zhang nexta++; 1653d6ab1dc0SHong Zhang } 1654e745005bSHong Zhang } 16559566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * anz)); 1656d6ab1dc0SHong Zhang } 1657d6ab1dc0SHong Zhang } 1658d6ab1dc0SHong Zhang 1659d6ab1dc0SHong Zhang /* 3) send and recv matrix values coa */ 1660d6ab1dc0SHong Zhang buf_ri = merge->buf_ri; 1661d6ab1dc0SHong Zhang buf_rj = merge->buf_rj; 1662d6ab1dc0SHong Zhang len_s = merge->len_s; 16639566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &taga)); 16649566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits)); 1665d6ab1dc0SHong Zhang 16669566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(merge->nsend + 1, &s_waits, size, &status)); 1667d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1668d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1669d6ab1dc0SHong Zhang i = merge->owners_co[proc]; 16709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k)); 1671d6ab1dc0SHong Zhang k++; 1672d6ab1dc0SHong Zhang } 16739566063dSJacob Faibussowitsch if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status)); 16749566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status)); 1675d6ab1dc0SHong Zhang 16769566063dSJacob Faibussowitsch PetscCall(PetscFree2(s_waits, status)); 16779566063dSJacob Faibussowitsch PetscCall(PetscFree(r_waits)); 16789566063dSJacob Faibussowitsch PetscCall(PetscFree(coa)); 1679d6ab1dc0SHong Zhang 1680d6ab1dc0SHong Zhang /* 4) insert local Cseq and received values into Cmpi */ 16819566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1682d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1683e745005bSHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1684*f4f49eeaSPierre Jolivet nrows = *buf_ri_k[k]; 1685d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 1686a5b23f4aSJose E. Roman nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure */ 1687d6ab1dc0SHong Zhang } 1688d6ab1dc0SHong Zhang 1689d6ab1dc0SHong Zhang for (i = 0; i < cm; i++) { 1690d6ab1dc0SHong Zhang row = owners[rank] + i; /* global row index of C_seq */ 1691d6ab1dc0SHong Zhang bj_i = bj + bi[i]; /* col indices of the i-th row of C */ 1692d6ab1dc0SHong Zhang ba_i = ba + bi[i]; 1693d6ab1dc0SHong Zhang bnz = bi[i + 1] - bi[i]; 1694d6ab1dc0SHong Zhang /* add received vals into ba */ 1695d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1696d6ab1dc0SHong Zhang /* i-th row */ 1697d6ab1dc0SHong Zhang if (i == *nextrow[k]) { 1698d6ab1dc0SHong Zhang cnz = *(nextci[k] + 1) - *nextci[k]; 1699*f4f49eeaSPierre Jolivet cj = buf_rj[k] + *nextci[k]; 1700*f4f49eeaSPierre Jolivet ca = abuf_r[k] + *nextci[k]; 1701d6ab1dc0SHong Zhang nextcj = 0; 1702d6ab1dc0SHong Zhang for (j = 0; nextcj < cnz; j++) { 1703d6ab1dc0SHong Zhang if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */ 1704d6ab1dc0SHong Zhang ba_i[j] += ca[nextcj++]; 1705d6ab1dc0SHong Zhang } 1706d6ab1dc0SHong Zhang } 17079371c9d4SSatish Balay nextrow[k]++; 17089371c9d4SSatish Balay nextci[k]++; 17099566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(2.0 * cnz)); 1710d6ab1dc0SHong Zhang } 1711d6ab1dc0SHong Zhang } 17129566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES)); 1713d6ab1dc0SHong Zhang } 17149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 17159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 1716d6ab1dc0SHong Zhang 17179566063dSJacob Faibussowitsch PetscCall(PetscFree(ba)); 17189566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r[0])); 17199566063dSJacob Faibussowitsch PetscCall(PetscFree(abuf_r)); 17209566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 17213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1722d6ab1dc0SHong Zhang } 1723d6ab1dc0SHong Zhang 1724d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C) 1725d71ae5a4SJacob Faibussowitsch { 1726b419842dSStefano Zampini Mat A_loc; 17271cdffd5eSHong Zhang Mat_APMPI *ap; 17280298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 17296718818eSStefano Zampini Mat_MPIAIJ *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data; 1730d6ab1dc0SHong Zhang PetscInt *pdti, *pdtj, *poti, *potj, *ptJ; 1731d6ab1dc0SHong Zhang PetscInt nnz; 1732d6ab1dc0SHong Zhang PetscInt *lnk, *owners_co, *coi, *coj, i, k, pnz, row; 1733d6ab1dc0SHong Zhang PetscInt am = A->rmap->n, pn = P->cmap->n; 1734ce94432eSBarry Smith MPI_Comm comm; 1735d6ab1dc0SHong Zhang PetscMPIInt size, rank, tagi, tagj, *len_si, *len_s, *len_ri; 1736d6ab1dc0SHong Zhang PetscInt **buf_rj, **buf_ri, **buf_ri_k; 1737d6ab1dc0SHong Zhang PetscInt len, proc, *dnz, *onz, *owners; 1738d6ab1dc0SHong Zhang PetscInt nzi, *bi, *bj; 1739d6ab1dc0SHong Zhang PetscInt nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci; 1740d6ab1dc0SHong Zhang MPI_Request *swaits, *rwaits; 1741d6ab1dc0SHong Zhang MPI_Status *sstatus, rstatus; 1742d6ab1dc0SHong Zhang Mat_Merge_SeqsToMPI *merge; 1743d6ab1dc0SHong Zhang PetscInt *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j; 1744d6ab1dc0SHong Zhang PetscReal afill = 1.0, afill_tmp; 1745eec179cfSJacob Faibussowitsch PetscInt rstart = P->cmap->rstart, rmax, Armax; 1746b419842dSStefano Zampini Mat_SeqAIJ *a_loc; 1747eec179cfSJacob Faibussowitsch PetscHMapI ta; 1748b92f168fSBarry Smith MatType mtype; 1749d6ab1dc0SHong Zhang 1750d6ab1dc0SHong Zhang PetscFunctionBegin; 17519566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 1752d6ab1dc0SHong Zhang /* check if matrix local sizes are compatible */ 17539371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, 17549371c9d4SSatish Balay A->rmap->rend, P->rmap->rstart, P->rmap->rend); 1755d6ab1dc0SHong Zhang 17569566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 17579566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1758d6ab1dc0SHong Zhang 17593cdca5ebSHong Zhang /* create struct Mat_APMPI and attached it to C later */ 17601cdffd5eSHong Zhang PetscCall(PetscNew(&ap)); 1761d6ab1dc0SHong Zhang 1762d6ab1dc0SHong Zhang /* get A_loc by taking all local rows of A */ 17639566063dSJacob Faibussowitsch PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc)); 17642205254eSKarl Rupp 17651cdffd5eSHong Zhang ap->A_loc = A_loc; 1766d6ab1dc0SHong Zhang a_loc = (Mat_SeqAIJ *)(A_loc)->data; 1767d6ab1dc0SHong Zhang ai = a_loc->i; 1768d6ab1dc0SHong Zhang aj = a_loc->j; 1769d6ab1dc0SHong Zhang 1770d6ab1dc0SHong Zhang /* determine symbolic Co=(p->B)^T*A - send to others */ 17719566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 17729566063dSJacob Faibussowitsch PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 1773d6ab1dc0SHong Zhang pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors 1774d6ab1dc0SHong Zhang >= (num of nonzero rows of C_seq) - pn */ 17759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pon + 1, &coi)); 1776d6ab1dc0SHong Zhang coi[0] = 0; 1777d6ab1dc0SHong Zhang 1778d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */ 1779f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am])); 17809566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1781d6ab1dc0SHong Zhang current_space = free_space; 178219f0e57aSHong Zhang 1783d6ab1dc0SHong Zhang /* create and initialize a linked list */ 1784eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta)); 17854b38b95cSHong Zhang MatRowMergeMax_SeqAIJ(a_loc, am, ta); 1786eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 178733ba5e2fSHong Zhang 17889566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1789d6ab1dc0SHong Zhang 1790d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1791d6ab1dc0SHong Zhang pnz = poti[i + 1] - poti[i]; 1792d6ab1dc0SHong Zhang ptJ = potj + poti[i]; 1793d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1794d6ab1dc0SHong Zhang row = ptJ[j]; /* row of A_loc == col of Pot */ 1795d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1796d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1797d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 17989566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1799d6ab1dc0SHong Zhang } 1800d6ab1dc0SHong Zhang nnz = lnk[0]; 1801d6ab1dc0SHong Zhang 1802d6ab1dc0SHong Zhang /* If free space is not available, double the total space in the list */ 1803d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 18049566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1805d6ab1dc0SHong Zhang nspacedouble++; 1806d6ab1dc0SHong Zhang } 1807d6ab1dc0SHong Zhang 1808d6ab1dc0SHong Zhang /* Copy data into free space, and zero out denserows */ 18099566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 18102205254eSKarl Rupp 1811d6ab1dc0SHong Zhang current_space->array += nnz; 1812d6ab1dc0SHong Zhang current_space->local_used += nnz; 1813d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 18142205254eSKarl Rupp 1815d6ab1dc0SHong Zhang coi[i + 1] = coi[i] + nnz; 1816d6ab1dc0SHong Zhang } 1817d6ab1dc0SHong Zhang 18189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(coi[pon] + 1, &coj)); 18199566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, coj)); 18209566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */ 18212205254eSKarl Rupp 1822118727c9SMark F. Adams afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1); 1823d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 1824d6ab1dc0SHong Zhang 1825d6ab1dc0SHong Zhang /* send j-array (coj) of Co to other processors */ 1826d6ab1dc0SHong Zhang /* determine row ownership */ 18279566063dSJacob Faibussowitsch PetscCall(PetscNew(&merge)); 18289566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &merge->rowmap)); 18292205254eSKarl Rupp 1830d6ab1dc0SHong Zhang merge->rowmap->n = pn; 1831d6ab1dc0SHong Zhang merge->rowmap->bs = 1; 18322205254eSKarl Rupp 18339566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(merge->rowmap)); 1834d6ab1dc0SHong Zhang owners = merge->rowmap->range; 1835d6ab1dc0SHong Zhang 1836d6ab1dc0SHong Zhang /* determine the number of messages to send, their lengths */ 18379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &len_si)); 18389566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(size, &merge->len_s)); 18392205254eSKarl Rupp 1840d6ab1dc0SHong Zhang len_s = merge->len_s; 1841d6ab1dc0SHong Zhang merge->nsend = 0; 1842d6ab1dc0SHong Zhang 18439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size + 2, &owners_co)); 1844d6ab1dc0SHong Zhang 1845d6ab1dc0SHong Zhang proc = 0; 1846d6ab1dc0SHong Zhang for (i = 0; i < pon; i++) { 1847d6ab1dc0SHong Zhang while (prmap[i] >= owners[proc + 1]) proc++; 1848d6ab1dc0SHong Zhang len_si[proc]++; /* num of rows in Co to be sent to [proc] */ 1849d6ab1dc0SHong Zhang len_s[proc] += coi[i + 1] - coi[i]; 1850d6ab1dc0SHong Zhang } 1851d6ab1dc0SHong Zhang 1852d6ab1dc0SHong Zhang len = 0; /* max length of buf_si[] */ 1853d6ab1dc0SHong Zhang owners_co[0] = 0; 1854d6ab1dc0SHong Zhang for (proc = 0; proc < size; proc++) { 1855d6ab1dc0SHong Zhang owners_co[proc + 1] = owners_co[proc] + len_si[proc]; 1856d6ab1dc0SHong Zhang if (len_si[proc]) { 1857d6ab1dc0SHong Zhang merge->nsend++; 1858d6ab1dc0SHong Zhang len_si[proc] = 2 * (len_si[proc] + 1); 1859d6ab1dc0SHong Zhang len += len_si[proc]; 1860d6ab1dc0SHong Zhang } 1861d6ab1dc0SHong Zhang } 1862d6ab1dc0SHong Zhang 1863d6ab1dc0SHong Zhang /* determine the number and length of messages to receive for coi and coj */ 18649566063dSJacob Faibussowitsch PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv)); 18659566063dSJacob Faibussowitsch PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri)); 1866d6ab1dc0SHong Zhang 1867d6ab1dc0SHong Zhang /* post the Irecv and Isend of coj */ 18689566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagj)); 18699566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits)); 18709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(merge->nsend + 1, &swaits)); 1871d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1872d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1873d6ab1dc0SHong Zhang i = owners_co[proc]; 18749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k)); 1875d6ab1dc0SHong Zhang k++; 1876d6ab1dc0SHong Zhang } 1877d6ab1dc0SHong Zhang 1878d6ab1dc0SHong Zhang /* receives and sends of coj are complete */ 18799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &sstatus)); 1880d6ab1dc0SHong Zhang for (i = 0; i < merge->nrecv; i++) { 1881ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 18829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1883d6ab1dc0SHong Zhang } 18849566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 18859566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 1886d6ab1dc0SHong Zhang 18870acc65b4SHong Zhang /* add received column indices into table to update Armax */ 1888c4762a1bSJed Brown /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */ 18890acc65b4SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 18900acc65b4SHong Zhang Jptr = buf_rj[k]; 1891c76ffc5fSJacob Faibussowitsch for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1)); 18920acc65b4SHong Zhang } 1893eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Armax)); 18940acc65b4SHong Zhang 1895d6ab1dc0SHong Zhang /* send and recv coi */ 18969566063dSJacob Faibussowitsch PetscCall(PetscCommGetNewTag(comm, &tagi)); 18979566063dSJacob Faibussowitsch PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits)); 18989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len + 1, &buf_s)); 1899d6ab1dc0SHong Zhang buf_si = buf_s; /* points to the beginning of k-th msg to be sent */ 1900d6ab1dc0SHong Zhang for (proc = 0, k = 0; proc < size; proc++) { 1901d6ab1dc0SHong Zhang if (!len_s[proc]) continue; 1902d6ab1dc0SHong Zhang /* form outgoing message for i-structure: 1903d6ab1dc0SHong Zhang buf_si[0]: nrows to be sent 1904d6ab1dc0SHong Zhang [1:nrows]: row index (global) 1905d6ab1dc0SHong Zhang [nrows+1:2*nrows+1]: i-structure index 1906d6ab1dc0SHong Zhang */ 1907d6ab1dc0SHong Zhang nrows = len_si[proc] / 2 - 1; 1908d6ab1dc0SHong Zhang buf_si_i = buf_si + nrows + 1; 1909d6ab1dc0SHong Zhang buf_si[0] = nrows; 1910d6ab1dc0SHong Zhang buf_si_i[0] = 0; 1911d6ab1dc0SHong Zhang nrows = 0; 1912d6ab1dc0SHong Zhang for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) { 1913d6ab1dc0SHong Zhang nzi = coi[i + 1] - coi[i]; 1914d6ab1dc0SHong Zhang buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi; /* i-structure */ 1915d6ab1dc0SHong Zhang buf_si[nrows + 1] = prmap[i] - owners[proc]; /* local row index */ 1916d6ab1dc0SHong Zhang nrows++; 1917d6ab1dc0SHong Zhang } 19189566063dSJacob Faibussowitsch PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k)); 1919d6ab1dc0SHong Zhang k++; 1920d6ab1dc0SHong Zhang buf_si += len_si[proc]; 1921d6ab1dc0SHong Zhang } 1922d6ab1dc0SHong Zhang i = merge->nrecv; 1923d6ab1dc0SHong Zhang while (i--) { 1924ec4bef21SJose E. Roman PETSC_UNUSED PetscMPIInt icompleted; 19259566063dSJacob Faibussowitsch PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus)); 1926d6ab1dc0SHong Zhang } 19279566063dSJacob Faibussowitsch PetscCall(PetscFree(rwaits)); 19289566063dSJacob Faibussowitsch if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus)); 19299566063dSJacob Faibussowitsch PetscCall(PetscFree(len_si)); 19309566063dSJacob Faibussowitsch PetscCall(PetscFree(len_ri)); 19319566063dSJacob Faibussowitsch PetscCall(PetscFree(swaits)); 19329566063dSJacob Faibussowitsch PetscCall(PetscFree(sstatus)); 19339566063dSJacob Faibussowitsch PetscCall(PetscFree(buf_s)); 1934d6ab1dc0SHong Zhang 1935d6ab1dc0SHong Zhang /* compute the local portion of C (mpi mat) */ 1936d6ab1dc0SHong Zhang /* allocate bi array and free space for accumulating nonzero column info */ 19379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(pn + 1, &bi)); 1938d6ab1dc0SHong Zhang bi[0] = 0; 1939d6ab1dc0SHong Zhang 1940d6ab1dc0SHong Zhang /* set initial free space to be fill*(nnz(P) + nnz(AP)) */ 1941f91af8c7SBarry Smith nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am]))); 19429566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(nnz, &free_space)); 1943d6ab1dc0SHong Zhang current_space = free_space; 1944d6ab1dc0SHong Zhang 19459566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci)); 1946d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { 1947d6ab1dc0SHong Zhang buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */ 1948d6ab1dc0SHong Zhang nrows = *buf_ri_k[k]; 1949d6ab1dc0SHong Zhang nextrow[k] = buf_ri_k[k] + 1; /* next row number of k-th recved i-structure */ 19502d4ee042Sprj- nextci[k] = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure */ 1951d6ab1dc0SHong Zhang } 1952d6ab1dc0SHong Zhang 19539566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk)); 1954d0609cedSBarry Smith MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz); 1955d6ab1dc0SHong Zhang rmax = 0; 1956d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 1957d6ab1dc0SHong Zhang /* add pdt[i,:]*AP into lnk */ 1958d6ab1dc0SHong Zhang pnz = pdti[i + 1] - pdti[i]; 1959d6ab1dc0SHong Zhang ptJ = pdtj + pdti[i]; 1960d6ab1dc0SHong Zhang for (j = 0; j < pnz; j++) { 1961d6ab1dc0SHong Zhang row = ptJ[j]; /* row of AP == col of Pt */ 1962d6ab1dc0SHong Zhang anz = ai[row + 1] - ai[row]; 1963d6ab1dc0SHong Zhang Jptr = aj + ai[row]; 1964d6ab1dc0SHong Zhang /* add non-zero cols of AP into the sorted linked list lnk */ 19659566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk)); 1966d6ab1dc0SHong Zhang } 1967d6ab1dc0SHong Zhang 1968d6ab1dc0SHong Zhang /* add received col data into lnk */ 1969d6ab1dc0SHong Zhang for (k = 0; k < merge->nrecv; k++) { /* k-th received message */ 1970d6ab1dc0SHong Zhang if (i == *nextrow[k]) { /* i-th row */ 1971d6ab1dc0SHong Zhang nzi = *(nextci[k] + 1) - *nextci[k]; 1972d6ab1dc0SHong Zhang Jptr = buf_rj[k] + *nextci[k]; 19739566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk)); 19749371c9d4SSatish Balay nextrow[k]++; 19759371c9d4SSatish Balay nextci[k]++; 1976d6ab1dc0SHong Zhang } 1977d6ab1dc0SHong Zhang } 19788c78258cSHong Zhang 19798c78258cSHong Zhang /* add missing diagonal entry */ 19808c78258cSHong Zhang if (C->force_diagonals) { 19818c78258cSHong Zhang k = i + owners[rank]; /* column index */ 19829566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk)); 19838c78258cSHong Zhang } 19848c78258cSHong Zhang 1985d6ab1dc0SHong Zhang nnz = lnk[0]; 1986d6ab1dc0SHong Zhang 1987d6ab1dc0SHong Zhang /* if free space is not available, make more free space */ 1988d6ab1dc0SHong Zhang if (current_space->local_remaining < nnz) { 19899566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), ¤t_space)); 1990d6ab1dc0SHong Zhang nspacedouble++; 1991d6ab1dc0SHong Zhang } 1992d6ab1dc0SHong Zhang /* copy data into free space, then initialize lnk */ 19939566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk)); 19949566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz)); 19952205254eSKarl Rupp 1996d6ab1dc0SHong Zhang current_space->array += nnz; 1997d6ab1dc0SHong Zhang current_space->local_used += nnz; 1998d6ab1dc0SHong Zhang current_space->local_remaining -= nnz; 19992205254eSKarl Rupp 2000d6ab1dc0SHong Zhang bi[i + 1] = bi[i] + nnz; 2001d6ab1dc0SHong Zhang if (nnz > rmax) rmax = nnz; 2002d6ab1dc0SHong Zhang } 20039566063dSJacob Faibussowitsch PetscCall(PetscFree3(buf_ri_k, nextrow, nextci)); 2004d6ab1dc0SHong Zhang 20059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bi[pn] + 1, &bj)); 20069566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, bj)); 2007118727c9SMark F. Adams afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1); 2008d6ab1dc0SHong Zhang if (afill_tmp > afill) afill = afill_tmp; 20099566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 2010eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 20119566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj)); 20129566063dSJacob Faibussowitsch PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj)); 2013d6ab1dc0SHong Zhang 20144222ddf1SHong Zhang /* create symbolic parallel matrix C - why cannot be assembled in Numeric part */ 20159566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE)); 20169566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(C, PetscAbs(P->cmap->bs), PetscAbs(A->cmap->bs))); 20179566063dSJacob Faibussowitsch PetscCall(MatGetType(A, &mtype)); 20189566063dSJacob Faibussowitsch PetscCall(MatSetType(C, mtype)); 20199566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz)); 2020d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 20219566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(C, 1)); 20229566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 2023d6ab1dc0SHong Zhang for (i = 0; i < pn; i++) { 2024d6ab1dc0SHong Zhang row = i + rstart; 2025d6ab1dc0SHong Zhang nnz = bi[i + 1] - bi[i]; 2026d6ab1dc0SHong Zhang Jptr = bj + bi[i]; 20279566063dSJacob Faibussowitsch PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES)); 2028d6ab1dc0SHong Zhang } 20299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 20309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 20319566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2032d6ab1dc0SHong Zhang merge->bi = bi; 2033d6ab1dc0SHong Zhang merge->bj = bj; 2034d6ab1dc0SHong Zhang merge->coi = coi; 2035d6ab1dc0SHong Zhang merge->coj = coj; 2036d6ab1dc0SHong Zhang merge->buf_ri = buf_ri; 2037d6ab1dc0SHong Zhang merge->buf_rj = buf_rj; 2038d6ab1dc0SHong Zhang merge->owners_co = owners_co; 2039d6ab1dc0SHong Zhang 20404222ddf1SHong Zhang /* attach the supporting struct to C for reuse */ 20411cdffd5eSHong Zhang C->product->data = ap; 20426718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 20431cdffd5eSHong Zhang ap->merge = merge; 2044a560ef98SHong Zhang 20454222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ; 2046f96d37fcSHong Zhang 2047f96d37fcSHong Zhang #if defined(PETSC_USE_INFO) 2048f96d37fcSHong Zhang if (bi[pn] != 0) { 20499566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill)); 20509566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill)); 2051f96d37fcSHong Zhang } else { 20529566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 2053f96d37fcSHong Zhang } 2054f96d37fcSHong Zhang #endif 20553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2056f96d37fcSHong Zhang } 20574222ddf1SHong Zhang 2058d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C) 2059d71ae5a4SJacob Faibussowitsch { 20604222ddf1SHong Zhang Mat_Product *product = C->product; 20614222ddf1SHong Zhang Mat A = product->A, B = product->B; 20624222ddf1SHong Zhang PetscReal fill = product->fill; 20634222ddf1SHong Zhang PetscBool flg; 20644222ddf1SHong Zhang 20654222ddf1SHong Zhang PetscFunctionBegin; 20664222ddf1SHong Zhang /* scalable */ 20679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "scalable", &flg)); 20684222ddf1SHong Zhang if (flg) { 20699566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C)); 20704222ddf1SHong Zhang goto next; 20714222ddf1SHong Zhang } 20724222ddf1SHong Zhang 20734222ddf1SHong Zhang /* nonscalable */ 20749566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg)); 20754222ddf1SHong Zhang if (flg) { 20769566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C)); 20774222ddf1SHong Zhang goto next; 20784222ddf1SHong Zhang } 20794222ddf1SHong Zhang 20804222ddf1SHong Zhang /* matmatmult */ 20819566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 20824222ddf1SHong Zhang if (flg) { 20834222ddf1SHong Zhang Mat At; 20844222ddf1SHong Zhang Mat_APMPI *ptap; 20854222ddf1SHong Zhang 20869566063dSJacob Faibussowitsch PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 20879566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C)); 20886718818eSStefano Zampini ptap = (Mat_APMPI *)C->product->data; 20894222ddf1SHong Zhang if (ptap) { 20904222ddf1SHong Zhang ptap->Pt = At; 20916718818eSStefano Zampini C->product->destroy = MatDestroy_MPIAIJ_PtAP; 20924222ddf1SHong Zhang } 20934222ddf1SHong Zhang C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult; 20944222ddf1SHong Zhang goto next; 20954222ddf1SHong Zhang } 20964222ddf1SHong Zhang 20974e84afc0SStefano Zampini /* backend general code */ 20989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "backend", &flg)); 20994e84afc0SStefano Zampini if (flg) { 21009566063dSJacob Faibussowitsch PetscCall(MatProductSymbolic_MPIAIJBACKEND(C)); 21013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21024e84afc0SStefano Zampini } 21034e84afc0SStefano Zampini 21044222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported"); 21054222ddf1SHong Zhang 21064222ddf1SHong Zhang next: 21074222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB; 21083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21094222ddf1SHong Zhang } 21104222ddf1SHong Zhang 21114222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */ 2112d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C) 2113d71ae5a4SJacob Faibussowitsch { 21144222ddf1SHong Zhang Mat_Product *product = C->product; 21154222ddf1SHong Zhang Mat A = product->A, B = product->B; 21164222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 21174e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"}; 21184e84afc0SStefano Zampini PetscInt nalg = 5; 21194222ddf1SHong Zhang #else 21209371c9d4SSatish Balay const char *algTypes[4] = { 21219371c9d4SSatish Balay "scalable", 21229371c9d4SSatish Balay "nonscalable", 21239371c9d4SSatish Balay "seqmpi", 21249371c9d4SSatish Balay "backend", 21259371c9d4SSatish Balay }; 21264e84afc0SStefano Zampini PetscInt nalg = 4; 21274222ddf1SHong Zhang #endif 21284222ddf1SHong Zhang PetscInt alg = 1; /* set nonscalable algorithm as default */ 21294222ddf1SHong Zhang PetscBool flg; 21304222ddf1SHong Zhang MPI_Comm comm; 21314222ddf1SHong Zhang 21324222ddf1SHong Zhang PetscFunctionBegin; 21339566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21344222ddf1SHong Zhang 21354222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 21369566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 21374222ddf1SHong Zhang if (flg) { 21389566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21394222ddf1SHong Zhang 21404222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 21414222ddf1SHong Zhang if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 21424222ddf1SHong Zhang MatInfo Ainfo, Binfo; 21434222ddf1SHong Zhang PetscInt nz_local; 21444222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 21454222ddf1SHong Zhang 21469566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 21479566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 21484222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 21494222ddf1SHong Zhang 21504222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 21511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 21524222ddf1SHong Zhang 21534222ddf1SHong Zhang if (alg_scalable) { 21544222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 21559566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21569566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 21574222ddf1SHong Zhang } 21584222ddf1SHong Zhang } 21594222ddf1SHong Zhang } 21604222ddf1SHong Zhang 21614222ddf1SHong Zhang /* Get runtime option */ 21624222ddf1SHong Zhang if (product->api_user) { 2163d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 21649566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2165d0609cedSBarry Smith PetscOptionsEnd(); 21664222ddf1SHong Zhang } else { 2167d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 21689566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2169d0609cedSBarry Smith PetscOptionsEnd(); 21704222ddf1SHong Zhang } 217148a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21724222ddf1SHong Zhang 21734222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ; 21743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21754222ddf1SHong Zhang } 21764222ddf1SHong Zhang 2177d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C) 2178d71ae5a4SJacob Faibussowitsch { 21798a9c020eSBarry Smith PetscFunctionBegin; 21808a9c020eSBarry Smith PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 21818a9c020eSBarry Smith C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ; 21823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21838a9c020eSBarry Smith } 21848a9c020eSBarry Smith 21854222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */ 2186d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C) 2187d71ae5a4SJacob Faibussowitsch { 21884222ddf1SHong Zhang Mat_Product *product = C->product; 21894222ddf1SHong Zhang Mat A = product->A, B = product->B; 21904e84afc0SStefano Zampini const char *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"}; 21914e84afc0SStefano Zampini PetscInt nalg = 4; 21924222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 21934222ddf1SHong Zhang PetscBool flg; 21944222ddf1SHong Zhang MPI_Comm comm; 21954222ddf1SHong Zhang 21964222ddf1SHong Zhang PetscFunctionBegin; 21974222ddf1SHong Zhang /* Check matrix local sizes */ 21989566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 21999371c9d4SSatish Balay PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22009371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend); 22014222ddf1SHong Zhang 22024222ddf1SHong Zhang /* Set default algorithm */ 22039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 220448a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22054222ddf1SHong Zhang 22064222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22074222ddf1SHong Zhang if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */ 22084222ddf1SHong Zhang MatInfo Ainfo, Binfo; 22094222ddf1SHong Zhang PetscInt nz_local; 22104222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22114222ddf1SHong Zhang 22129566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22139566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo)); 22144222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated); 22154222ddf1SHong Zhang 22164222ddf1SHong Zhang if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22171c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 22184222ddf1SHong Zhang 22194222ddf1SHong Zhang if (alg_scalable) { 22204222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 22219566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22229566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local))); 22234222ddf1SHong Zhang } 22244222ddf1SHong Zhang } 22254222ddf1SHong Zhang 22264222ddf1SHong Zhang /* Get runtime option */ 22274222ddf1SHong Zhang if (product->api_user) { 2228d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 22299566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2230d0609cedSBarry Smith PetscOptionsEnd(); 22314222ddf1SHong Zhang } else { 2232d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 22339566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2234d0609cedSBarry Smith PetscOptionsEnd(); 22354222ddf1SHong Zhang } 223648a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22374222ddf1SHong Zhang 22384222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ; 22393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22404222ddf1SHong Zhang } 22414222ddf1SHong Zhang 2242d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C) 2243d71ae5a4SJacob Faibussowitsch { 22444222ddf1SHong Zhang Mat_Product *product = C->product; 22454222ddf1SHong Zhang Mat A = product->A, P = product->B; 22464222ddf1SHong Zhang MPI_Comm comm; 22474222ddf1SHong Zhang PetscBool flg; 22484222ddf1SHong Zhang PetscInt alg = 1; /* set default algorithm */ 22494222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 22504e84afc0SStefano Zampini const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"}; 22514222ddf1SHong Zhang PetscInt nalg = 5; 22524e84afc0SStefano Zampini #else 22534e84afc0SStefano Zampini const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"}; 22544e84afc0SStefano Zampini PetscInt nalg = 6; 22554222ddf1SHong Zhang #endif 22564222ddf1SHong Zhang PetscInt pN = P->cmap->N; 22574222ddf1SHong Zhang 22584222ddf1SHong Zhang PetscFunctionBegin; 22594222ddf1SHong Zhang /* Check matrix local sizes */ 22609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 22619371c9d4SSatish Balay PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22629371c9d4SSatish Balay A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend); 22639371c9d4SSatish Balay PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")", 22649371c9d4SSatish Balay A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend); 22654222ddf1SHong Zhang 22664222ddf1SHong Zhang /* Set "nonscalable" as default algorithm */ 22679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 22684222ddf1SHong Zhang if (flg) { 22699566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22704222ddf1SHong Zhang 22714222ddf1SHong Zhang /* Set "scalable" as default if BN and local nonzeros of A and B are large */ 22724222ddf1SHong Zhang if (pN > 100000) { 22734222ddf1SHong Zhang MatInfo Ainfo, Pinfo; 22744222ddf1SHong Zhang PetscInt nz_local; 22754222ddf1SHong Zhang PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable; 22764222ddf1SHong Zhang 22779566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo)); 22789566063dSJacob Faibussowitsch PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo)); 22794222ddf1SHong Zhang nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated); 22804222ddf1SHong Zhang 22814222ddf1SHong Zhang if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE; 22821c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm)); 22834222ddf1SHong Zhang 22844222ddf1SHong Zhang if (alg_scalable) { 22854222ddf1SHong Zhang alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */ 22869566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 22874222ddf1SHong Zhang } 22884222ddf1SHong Zhang } 22894222ddf1SHong Zhang } 22904222ddf1SHong Zhang 22914222ddf1SHong Zhang /* Get runtime option */ 22924222ddf1SHong Zhang if (product->api_user) { 2293d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 22949566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2295d0609cedSBarry Smith PetscOptionsEnd(); 22964222ddf1SHong Zhang } else { 2297d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 22989566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg)); 2299d0609cedSBarry Smith PetscOptionsEnd(); 23004222ddf1SHong Zhang } 230148a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23024222ddf1SHong Zhang 23034222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ; 23043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23054222ddf1SHong Zhang } 23064222ddf1SHong Zhang 2307d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C) 2308d71ae5a4SJacob Faibussowitsch { 23094222ddf1SHong Zhang Mat_Product *product = C->product; 23104222ddf1SHong Zhang Mat A = product->A, R = product->B; 23114222ddf1SHong Zhang 23124222ddf1SHong Zhang PetscFunctionBegin; 23134222ddf1SHong Zhang /* Check matrix local sizes */ 23149371c9d4SSatish Balay PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n, 23159371c9d4SSatish Balay A->rmap->n, R->rmap->n, R->cmap->n); 23164222ddf1SHong Zhang 23174222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ; 23183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23194222ddf1SHong Zhang } 23204222ddf1SHong Zhang 23214222ddf1SHong Zhang /* 23224222ddf1SHong Zhang Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm 23234222ddf1SHong Zhang */ 2324d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C) 2325d71ae5a4SJacob Faibussowitsch { 23264222ddf1SHong Zhang Mat_Product *product = C->product; 23274222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 23284222ddf1SHong Zhang PetscInt alg = 1; /* default algorithm */ 23294222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "nonscalable", "seqmpi"}; 23304222ddf1SHong Zhang PetscInt nalg = 3; 23314222ddf1SHong Zhang 23324222ddf1SHong Zhang PetscFunctionBegin; 23334222ddf1SHong Zhang /* Set default algorithm */ 23349566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 233548a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23364222ddf1SHong Zhang 23374222ddf1SHong Zhang /* Get runtime option */ 23384222ddf1SHong Zhang if (product->api_user) { 2339d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 23409566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2341d0609cedSBarry Smith PetscOptionsEnd(); 23424222ddf1SHong Zhang } else { 2343d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 23449566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2345d0609cedSBarry Smith PetscOptionsEnd(); 23464222ddf1SHong Zhang } 234748a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 23484222ddf1SHong Zhang 23494222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ; 23504222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 23513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23524222ddf1SHong Zhang } 23534222ddf1SHong Zhang 2354d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C) 2355d71ae5a4SJacob Faibussowitsch { 23564222ddf1SHong Zhang Mat_Product *product = C->product; 23574222ddf1SHong Zhang 23584222ddf1SHong Zhang PetscFunctionBegin; 23594222ddf1SHong Zhang switch (product->type) { 2360d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2361d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C)); 2362d71ae5a4SJacob Faibussowitsch break; 2363d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2364d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C)); 2365d71ae5a4SJacob Faibussowitsch break; 2366d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2367d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C)); 2368d71ae5a4SJacob Faibussowitsch break; 2369d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 2370d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C)); 2371d71ae5a4SJacob Faibussowitsch break; 2372d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt: 2373d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C)); 2374d71ae5a4SJacob Faibussowitsch break; 2375d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 2376d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C)); 2377d71ae5a4SJacob Faibussowitsch break; 2378d71ae5a4SJacob Faibussowitsch default: 2379d71ae5a4SJacob Faibussowitsch break; 23804222ddf1SHong Zhang } 23813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23824222ddf1SHong Zhang } 2383