xref: /petsc/src/mat/impls/aij/mpi/mpimatmatmult.c (revision f4f49eeac7efa77fffa46b7ff95a3ed169f659ed)
12499ec78SHong Zhang /*
22499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of MPIAIJ matrices
32499ec78SHong Zhang           C = A * B
42499ec78SHong Zhang */
5c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
6c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
7c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
8c6db04a5SJed Brown #include <petscbt.h>
9c6db04a5SJed Brown #include <../src/mat/impls/dense/mpi/mpidense.h>
10af0996ceSBarry Smith #include <petsc/private/vecimpl.h>
1197929ea7SJunchao Zhang #include <petsc/private/sfimpl.h>
121634b032SHong Zhang 
135e5acdf2Sstefano_zampini #if defined(PETSC_HAVE_HYPRE)
144222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatMatMultSymbolic_AIJ_AIJ_wHYPRE(Mat, Mat, PetscReal, Mat);
155e5acdf2Sstefano_zampini #endif
165e5acdf2Sstefano_zampini 
17d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_ABt_MPIAIJ_MPIAIJ(Mat C)
18d71ae5a4SJacob Faibussowitsch {
198a9c020eSBarry Smith   Mat_Product *product = C->product;
208a9c020eSBarry Smith   Mat          B       = product->B;
218a9c020eSBarry Smith 
228a9c020eSBarry Smith   PetscFunctionBegin;
238a9c020eSBarry Smith   PetscCall(MatTranspose(B, MAT_INITIAL_MATRIX, &product->B));
248a9c020eSBarry Smith   PetscCall(MatDestroy(&B));
258a9c020eSBarry Smith   PetscCall(MatProductSymbolic_AB_MPIAIJ_MPIAIJ(C));
263ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278a9c020eSBarry Smith }
288a9c020eSBarry Smith 
29d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSymbolic_AB_MPIAIJ_MPIAIJ(Mat C)
30d71ae5a4SJacob Faibussowitsch {
314222ddf1SHong Zhang   Mat_Product        *product = C->product;
324222ddf1SHong Zhang   Mat                 A = product->A, B = product->B;
334222ddf1SHong Zhang   MatProductAlgorithm alg  = product->alg;
344222ddf1SHong Zhang   PetscReal           fill = product->fill;
355e68f438SHong Zhang   PetscBool           flg;
362499ec78SHong Zhang 
372499ec78SHong Zhang   PetscFunctionBegin;
384222ddf1SHong Zhang   /* scalable */
399566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
404222ddf1SHong Zhang   if (flg) {
419566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
423ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
430fc8cf34SHong Zhang   }
447d0a89b7SHong Zhang 
454222ddf1SHong Zhang   /* nonscalable */
469566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "nonscalable", &flg));
474222ddf1SHong Zhang   if (flg) {
489566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
493ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
504222ddf1SHong Zhang   }
514222ddf1SHong Zhang 
524222ddf1SHong Zhang   /* seqmpi */
539566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "seqmpi", &flg));
544222ddf1SHong Zhang   if (flg) {
559566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(A, B, fill, C));
563ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
574222ddf1SHong Zhang   }
584222ddf1SHong Zhang 
594e84afc0SStefano Zampini   /* backend general code */
609566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "backend", &flg));
614e84afc0SStefano Zampini   if (flg) {
629566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
633ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
644e84afc0SStefano Zampini   }
654e84afc0SStefano Zampini 
664222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
684222ddf1SHong Zhang   if (flg) {
699566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
703ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
714222ddf1SHong Zhang   }
724222ddf1SHong Zhang #endif
734222ddf1SHong Zhang   SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
742499ec78SHong Zhang }
752499ec78SHong Zhang 
76d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(void *data)
77d71ae5a4SJacob Faibussowitsch {
786718818eSStefano Zampini   Mat_APMPI *ptap = (Mat_APMPI *)data;
79598bc09dSHong Zhang 
80598bc09dSHong Zhang   PetscFunctionBegin;
819566063dSJacob Faibussowitsch   PetscCall(PetscFree2(ptap->startsj_s, ptap->startsj_r));
829566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->bufa));
839566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_loc));
849566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->P_oth));
859566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&ptap->Pt));
869566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->api));
879566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apj));
889566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap->apa));
899566063dSJacob Faibussowitsch   PetscCall(PetscFree(ptap));
903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
91598bc09dSHong Zhang }
92598bc09dSHong Zhang 
93d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, Mat C)
94d71ae5a4SJacob Faibussowitsch {
954ae0847bSHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
96*f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
97*f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
98c12557a1SHong Zhang   PetscScalar       *cda = cd->a, *coa = co->a;
99598bc09dSHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
1009ce11a7cSHong Zhang   PetscScalar       *apa, *ca;
101c12557a1SHong Zhang   PetscInt           cm = C->rmap->n;
1026718818eSStefano Zampini   Mat_APMPI         *ptap;
103c12557a1SHong Zhang   PetscInt          *api, *apj, *apJ, i, k;
10429825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
105598bc09dSHong Zhang   PetscInt           cdnz, conz, k0, k1;
106ce496241SStefano Zampini   const PetscScalar *dummy;
1079467f45fSHong Zhang   MPI_Comm           comm;
1089467f45fSHong Zhang   PetscMPIInt        size;
109598bc09dSHong Zhang 
110598bc09dSHong Zhang   PetscFunctionBegin;
1116718818eSStefano Zampini   MatCheckProduct(C, 3);
1126718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
11328b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
1149566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
116aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
11780da8df7SHong Zhang 
11865e4b4d4SStefano Zampini   /* flag CPU mask for C */
11965e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
12065e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
12165e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
12265e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
12365e4b4d4SStefano Zampini #endif
12465e4b4d4SStefano Zampini 
125a1a4e84aSHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
126a1a4e84aSHong Zhang   /* update numerical values of P_oth and P_loc */
1279566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1289566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
129598bc09dSHong Zhang 
130598bc09dSHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
131598bc09dSHong Zhang   /* get data from symbolic products */
132*f4f49eeaSPierre Jolivet   p_loc = (Mat_SeqAIJ *)ptap->P_loc->data;
133c12557a1SHong Zhang   p_oth = NULL;
134*f4f49eeaSPierre Jolivet   if (size > 1) p_oth = (Mat_SeqAIJ *)ptap->P_oth->data;
135598bc09dSHong Zhang 
136598bc09dSHong Zhang   /* get apa for storing dense row A[i,:]*P */
137598bc09dSHong Zhang   apa = ptap->apa;
138598bc09dSHong Zhang 
13929825010SHong Zhang   api = ptap->api;
14029825010SHong Zhang   apj = ptap->apj;
141ce496241SStefano Zampini   /* trigger copy to CPU */
1429566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
1439566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
1449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
1459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
146598bc09dSHong Zhang   for (i = 0; i < cm; i++) {
147c12557a1SHong Zhang     /* compute apa = A[i,:]*P */
148e497d3c8SHong Zhang     AProw_nonscalable(i, ad, ao, p_loc, p_oth, apa);
149598bc09dSHong Zhang 
150598bc09dSHong Zhang     /* set values in C */
151598bc09dSHong Zhang     apJ  = apj + api[i];
152598bc09dSHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
153598bc09dSHong Zhang     conz = co->i[i + 1] - co->i[i];
154598bc09dSHong Zhang 
155910cf402Sprj-     /* 1st off-diagonal part of C */
1568e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
157598bc09dSHong Zhang     k  = 0;
158598bc09dSHong Zhang     for (k0 = 0; k0 < conz; k0++) {
159598bc09dSHong Zhang       if (apJ[k] >= cstart) break;
160598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1615cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
162598bc09dSHong Zhang     }
163598bc09dSHong Zhang 
164598bc09dSHong Zhang     /* diagonal part of C */
1658e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(cda, cd->i[i]);
166598bc09dSHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
167598bc09dSHong Zhang       ca[k1]        = apa[apJ[k]];
1685cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
169598bc09dSHong Zhang     }
170598bc09dSHong Zhang 
171910cf402Sprj-     /* 2nd off-diagonal part of C */
1728e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
173598bc09dSHong Zhang     for (; k0 < conz; k0++) {
174598bc09dSHong Zhang       ca[k0]        = apa[apJ[k]];
1755cab4f04SHong Zhang       apa[apJ[k++]] = 0.0;
176598bc09dSHong Zhang     }
177598bc09dSHong Zhang   }
1789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
1799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
181598bc09dSHong Zhang }
182598bc09dSHong Zhang 
183d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat A, Mat P, PetscReal fill, Mat C)
184d71ae5a4SJacob Faibussowitsch {
185ce94432eSBarry Smith   MPI_Comm           comm;
1869467f45fSHong Zhang   PetscMPIInt        size;
1873cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1880298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
1896718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
190*f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
1917dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
1924ae0847bSHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
193d14fa243SHong Zhang   PetscInt          *lnk, i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi;
1945cab4f04SHong Zhang   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n;
195598bc09dSHong Zhang   PetscBT            lnkbt;
196bfcd1a73SHong Zhang   PetscReal          afill;
197b92f168fSBarry Smith   MatType            mtype;
198598bc09dSHong Zhang 
199598bc09dSHong Zhang   PetscFunctionBegin;
2006718818eSStefano Zampini   MatCheckProduct(C, 4);
20128b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
2029566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
2039566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
2049467f45fSHong Zhang 
2053cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
2069566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
207598bc09dSHong Zhang 
208598bc09dSHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
2099566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
21019f0e57aSHong Zhang 
211598bc09dSHong Zhang   /* get P_loc by taking all local rows of P */
2129566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
213598bc09dSHong Zhang 
214*f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
2159371c9d4SSatish Balay   pi_loc = p_loc->i;
2169371c9d4SSatish Balay   pj_loc = p_loc->j;
2179467f45fSHong Zhang   if (size > 1) {
218*f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
2199371c9d4SSatish Balay     pi_oth = p_oth->i;
2209371c9d4SSatish Balay     pj_oth = p_oth->j;
22120e3dc75SHong Zhang   } else {
22220e3dc75SHong Zhang     p_oth  = NULL;
2239371c9d4SSatish Balay     pi_oth = NULL;
2249371c9d4SSatish Balay     pj_oth = NULL;
2259467f45fSHong Zhang   }
226598bc09dSHong Zhang 
227598bc09dSHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
2289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
229a1a4e84aSHong Zhang   ptap->api = api;
230598bc09dSHong Zhang   api[0]    = 0;
231598bc09dSHong Zhang 
2325cab4f04SHong Zhang   /* create and initialize a linked list */
2339566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
234598bc09dSHong Zhang 
235bfcd1a73SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
2369566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
237598bc09dSHong Zhang   current_space = free_space;
238598bc09dSHong Zhang 
239d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
240598bc09dSHong Zhang   for (i = 0; i < am; i++) {
241598bc09dSHong Zhang     /* diagonal portion of A */
242598bc09dSHong Zhang     nzi = adi[i + 1] - adi[i];
243598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
244598bc09dSHong Zhang       row  = *adj++;
245598bc09dSHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
246598bc09dSHong Zhang       Jptr = pj_loc + pi_loc[row];
247598bc09dSHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
2489566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
249598bc09dSHong Zhang     }
250598bc09dSHong Zhang     /* off-diagonal portion of A */
251598bc09dSHong Zhang     nzi = aoi[i + 1] - aoi[i];
252598bc09dSHong Zhang     for (j = 0; j < nzi; j++) {
253598bc09dSHong Zhang       row  = *aoj++;
254598bc09dSHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
255598bc09dSHong Zhang       Jptr = pj_oth + pi_oth[row];
2569566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, Jptr, lnk, lnkbt));
257598bc09dSHong Zhang     }
2588c78258cSHong Zhang     /* add possible missing diagonal entry */
2598c78258cSHong Zhang     if (C->force_diagonals) {
2608c78258cSHong Zhang       j = i + rstart; /* column index */
2619566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &j, lnk, lnkbt));
2628c78258cSHong Zhang     }
263598bc09dSHong Zhang 
264d14fa243SHong Zhang     apnz       = lnk[0];
265598bc09dSHong Zhang     api[i + 1] = api[i] + apnz;
266598bc09dSHong Zhang 
267598bc09dSHong Zhang     /* if free space is not available, double the total space in the list */
268598bc09dSHong Zhang     if (current_space->local_remaining < apnz) {
2699566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
270598bc09dSHong Zhang       nspacedouble++;
271598bc09dSHong Zhang     }
272598bc09dSHong Zhang 
273598bc09dSHong Zhang     /* Copy data into free space, then initialize lnk */
2749566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, apnz, current_space->array, lnk, lnkbt));
2759566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
2762205254eSKarl Rupp 
277598bc09dSHong Zhang     current_space->array += apnz;
278598bc09dSHong Zhang     current_space->local_used += apnz;
279598bc09dSHong Zhang     current_space->local_remaining -= apnz;
280598bc09dSHong Zhang   }
281598bc09dSHong Zhang 
282598bc09dSHong Zhang   /* Allocate space for apj, initialize apj, and */
283598bc09dSHong Zhang   /* destroy list of free space and other temporary array(s) */
2849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj));
285a1a4e84aSHong Zhang   apj = ptap->apj;
2869566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
2879566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
288598bc09dSHong Zhang 
289f84c536bSHong Zhang   /* malloc apa to store dense row A[i,:]*P */
2909566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN, &ptap->apa));
291f84c536bSHong Zhang 
2924222ddf1SHong Zhang   /* set and assemble symbolic parallel matrix C */
2939566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
2949566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
295a2f3521dSMark F. Adams 
2969566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
2979566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
2989566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
299d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
30017f75172Sandi selinger 
3019566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
3029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
305598bc09dSHong Zhang 
3064222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
3074222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
308598bc09dSHong Zhang 
3094222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
3106718818eSStefano Zampini   C->product->data    = ptap;
3116718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
312598bc09dSHong Zhang 
313bfcd1a73SHong Zhang   /* set MatInfo */
314118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
315bfcd1a73SHong Zhang   if (afill < 1.0) afill = 1.0;
3164222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
3174222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
3184222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
319bfcd1a73SHong Zhang 
320bfcd1a73SHong Zhang #if defined(PETSC_USE_INFO)
321bfcd1a73SHong Zhang   if (api[am]) {
3229566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
3239566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
324bfcd1a73SHong Zhang   } else {
3259566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
326bfcd1a73SHong Zhang   }
327bfcd1a73SHong Zhang #endif
3283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
329598bc09dSHong Zhang }
330598bc09dSHong Zhang 
3316718818eSStefano Zampini static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat, Mat, PetscReal, Mat);
3326718818eSStefano Zampini static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat, Mat, Mat);
3336718818eSStefano Zampini 
334d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AB(Mat C)
335d71ae5a4SJacob Faibussowitsch {
3364222ddf1SHong Zhang   Mat_Product *product = C->product;
3374222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3389123193aSHong Zhang 
3399123193aSHong Zhang   PetscFunctionBegin;
3404222ddf1SHong Zhang   if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend)
34198921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->cmap->rstart, A->cmap->rend, B->rmap->rstart, B->rmap->rend);
3424222ddf1SHong Zhang 
3434222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_MPIAIJ_MPIDense;
3444222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
3453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3469123193aSHong Zhang }
3472ef1f0ffSBarry Smith 
348d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(Mat C)
349d71ae5a4SJacob Faibussowitsch {
3504222ddf1SHong Zhang   Mat_Product *product = C->product;
3514222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
3524222ddf1SHong Zhang 
3534222ddf1SHong Zhang   PetscFunctionBegin;
3544222ddf1SHong Zhang   if (A->rmap->rstart != B->rmap->rstart || A->rmap->rend != B->rmap->rend)
35598921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, (%" PetscInt_FMT ", %" PetscInt_FMT ") != (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
3564222ddf1SHong Zhang 
3574222ddf1SHong Zhang   C->ops->transposematmultsymbolic = MatTransposeMatMultSymbolic_MPIAIJ_MPIDense;
3584222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
3593ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3604222ddf1SHong Zhang }
3614222ddf1SHong Zhang 
362d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ_MPIDense(Mat C)
363d71ae5a4SJacob Faibussowitsch {
3644222ddf1SHong Zhang   Mat_Product *product = C->product;
3654222ddf1SHong Zhang 
3664222ddf1SHong Zhang   PetscFunctionBegin;
3674222ddf1SHong Zhang   switch (product->type) {
368d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
369d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AB(C));
370d71ae5a4SJacob Faibussowitsch     break;
371d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
372d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_MPIDense_AtB(C));
373d71ae5a4SJacob Faibussowitsch     break;
374d71ae5a4SJacob Faibussowitsch   default:
375d71ae5a4SJacob Faibussowitsch     break;
3764222ddf1SHong Zhang   }
3773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3784222ddf1SHong Zhang }
3799123193aSHong Zhang 
3804324174eSBarry Smith typedef struct {
3815ea7661aSPierre Jolivet   Mat           workB, workB1;
3824324174eSBarry Smith   MPI_Request  *rwaits, *swaits;
38387753ddeSHong Zhang   PetscInt      nsends, nrecvs;
38487753ddeSHong Zhang   MPI_Datatype *stype, *rtype;
3856718818eSStefano Zampini   PetscInt      blda;
3864324174eSBarry Smith } MPIAIJ_MPIDense;
3874324174eSBarry Smith 
38866976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIAIJ_MPIDenseDestroy(void *ctx)
389d71ae5a4SJacob Faibussowitsch {
3904324174eSBarry Smith   MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense *)ctx;
39187753ddeSHong Zhang   PetscInt         i;
3924324174eSBarry Smith 
3934324174eSBarry Smith   PetscFunctionBegin;
3949566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB));
3959566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&contents->workB1));
39648a46eb9SPierre Jolivet   for (i = 0; i < contents->nsends; i++) PetscCallMPI(MPI_Type_free(&contents->stype[i]));
39748a46eb9SPierre Jolivet   for (i = 0; i < contents->nrecvs; i++) PetscCallMPI(MPI_Type_free(&contents->rtype[i]));
3989566063dSJacob Faibussowitsch   PetscCall(PetscFree4(contents->stype, contents->rtype, contents->rwaits, contents->swaits));
3999566063dSJacob Faibussowitsch   PetscCall(PetscFree(contents));
4003ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
4014324174eSBarry Smith }
4024324174eSBarry Smith 
403d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A, Mat B, PetscReal fill, Mat C)
404d71ae5a4SJacob Faibussowitsch {
405f32d5d43SBarry Smith   Mat_MPIAIJ      *aij = (Mat_MPIAIJ *)A->data;
406b45e3bf4SStefano Zampini   PetscInt         nz  = aij->B->cmap->n, nsends, nrecvs, i, nrows_to, j, blda, m, M, n, N;
4074324174eSBarry Smith   MPIAIJ_MPIDense *contents;
4084324174eSBarry Smith   VecScatter       ctx = aij->Mvctx;
4095ea7661aSPierre Jolivet   PetscInt         Am = A->rmap->n, Bm = B->rmap->n, BN = B->cmap->N, Bbn, Bbn1, bs, nrows_from, numBb;
41087753ddeSHong Zhang   MPI_Comm         comm;
41187753ddeSHong Zhang   MPI_Datatype     type1, *stype, *rtype;
41287753ddeSHong Zhang   const PetscInt  *sindices, *sstarts, *rstarts;
41387753ddeSHong Zhang   PetscMPIInt     *disp;
4146718818eSStefano Zampini   PetscBool        cisdense;
4159123193aSHong Zhang 
4169123193aSHong Zhang   PetscFunctionBegin;
4176718818eSStefano Zampini   MatCheckProduct(C, 4);
41828b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data not empty");
4199566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
4209566063dSJacob Faibussowitsch   PetscCall(PetscObjectBaseTypeCompare((PetscObject)C, MATMPIDENSE, &cisdense));
42148a46eb9SPierre Jolivet   if (!cisdense) PetscCall(MatSetType(C, ((PetscObject)B)->type_name));
4229566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(C, &m, &n));
4239566063dSJacob Faibussowitsch   PetscCall(MatGetSize(C, &M, &N));
42448a46eb9SPierre Jolivet   if (m == PETSC_DECIDE || n == PETSC_DECIDE || M == PETSC_DECIDE || N == PETSC_DECIDE) PetscCall(MatSetSizes(C, Am, B->cmap->n, A->rmap->N, BN));
4259566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
4269566063dSJacob Faibussowitsch   PetscCall(MatSetUp(C));
4279566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
4289566063dSJacob Faibussowitsch   PetscCall(PetscNew(&contents));
4294324174eSBarry Smith 
4309566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4319566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
43287753ddeSHong Zhang 
43387753ddeSHong Zhang   /* Create column block of B and C for memory scalability when BN is too large */
43487753ddeSHong Zhang   /* Estimate Bbn, column size of Bb */
43587753ddeSHong Zhang   if (nz) {
43687753ddeSHong Zhang     Bbn1 = 2 * Am * BN / nz;
437da7cbbe7SHong Zhang     if (!Bbn1) Bbn1 = 1;
43887753ddeSHong Zhang   } else Bbn1 = BN;
43987753ddeSHong Zhang 
44087753ddeSHong Zhang   bs   = PetscAbs(B->cmap->bs);
44187753ddeSHong Zhang   Bbn1 = Bbn1 / bs * bs; /* Bbn1 is a multiple of bs */
44287753ddeSHong Zhang   if (Bbn1 > BN) Bbn1 = BN;
443712fec58SPierre Jolivet   PetscCall(MPIU_Allreduce(&Bbn1, &Bbn, 1, MPIU_INT, MPI_MAX, comm));
44487753ddeSHong Zhang 
44587753ddeSHong Zhang   /* Enable runtime option for Bbn */
446d0609cedSBarry Smith   PetscOptionsBegin(comm, ((PetscObject)C)->prefix, "MatMatMult", "Mat");
4479566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-matmatmult_Bbn", "Number of columns in Bb", "MatMatMult", Bbn, &Bbn, NULL));
448d0609cedSBarry Smith   PetscOptionsEnd();
4496718818eSStefano Zampini   Bbn = PetscMin(Bbn, BN);
45087753ddeSHong Zhang 
4516718818eSStefano Zampini   if (Bbn > 0 && Bbn < BN) {
4525ea7661aSPierre Jolivet     numBb = BN / Bbn;
4535ea7661aSPierre Jolivet     Bbn1  = BN - numBb * Bbn;
4545ea7661aSPierre Jolivet   } else numBb = 0;
45587753ddeSHong Zhang 
4565ea7661aSPierre Jolivet   if (numBb) {
4579566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "use Bb, BN=%" PetscInt_FMT ", Bbn=%" PetscInt_FMT "; numBb=%" PetscInt_FMT "\n", BN, Bbn, numBb));
4585ea7661aSPierre Jolivet     if (Bbn1) { /* Create workB1 for the remaining columns */
4599566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C, "use Bb1, BN=%" PetscInt_FMT ", Bbn1=%" PetscInt_FMT "\n", BN, Bbn1));
46087753ddeSHong Zhang       /* Create work matrix used to store off processor rows of B needed for local product */
4619566063dSJacob Faibussowitsch       PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn1, NULL, &contents->workB1));
4625ea7661aSPierre Jolivet     } else contents->workB1 = NULL;
46387753ddeSHong Zhang   }
46487753ddeSHong Zhang 
46587753ddeSHong Zhang   /* Create work matrix used to store off processor rows of B needed for local product */
4669566063dSJacob Faibussowitsch   PetscCall(MatCreateSeqDense(PETSC_COMM_SELF, nz, Bbn, NULL, &contents->workB));
46787753ddeSHong Zhang 
46887753ddeSHong Zhang   /* Use MPI derived data type to reduce memory required by the send/recv buffers */
4699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(nsends, &stype, nrecvs, &rtype, nrecvs, &contents->rwaits, nsends, &contents->swaits));
47087753ddeSHong Zhang   contents->stype  = stype;
47187753ddeSHong Zhang   contents->nsends = nsends;
47287753ddeSHong Zhang 
47387753ddeSHong Zhang   contents->rtype  = rtype;
47487753ddeSHong Zhang   contents->nrecvs = nrecvs;
4756718818eSStefano Zampini   contents->blda   = blda;
47687753ddeSHong Zhang 
4779566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Bm + 1, &disp));
47887753ddeSHong Zhang   for (i = 0; i < nsends; i++) {
47987753ddeSHong Zhang     nrows_to = sstarts[i + 1] - sstarts[i];
480b45e3bf4SStefano Zampini     for (j = 0; j < nrows_to; j++) disp[j] = sindices[sstarts[i] + j]; /* rowB to be sent */
4819566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(nrows_to, 1, disp, MPIU_SCALAR, &type1));
4829566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, blda * sizeof(PetscScalar), &stype[i]));
4839566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&stype[i]));
4849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
48587753ddeSHong Zhang   }
48687753ddeSHong Zhang 
48787753ddeSHong Zhang   for (i = 0; i < nrecvs; i++) {
48887753ddeSHong Zhang     /* received values from a process form a (nrows_from x Bbn) row block in workB (column-wise) */
48987753ddeSHong Zhang     nrows_from = rstarts[i + 1] - rstarts[i];
49087753ddeSHong Zhang     disp[0]    = 0;
4919566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_indexed_block(1, nrows_from, disp, MPIU_SCALAR, &type1));
4929566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_create_resized(type1, 0, nz * sizeof(PetscScalar), &rtype[i]));
4939566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_commit(&rtype[i]));
4949566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Type_free(&type1));
49587753ddeSHong Zhang   }
49687753ddeSHong Zhang 
4979566063dSJacob Faibussowitsch   PetscCall(PetscFree(disp));
4989566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, NULL, NULL));
4999566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, NULL, NULL));
5009566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
5019566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
5029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
5036718818eSStefano Zampini 
5046718818eSStefano Zampini   C->product->data       = contents;
5056718818eSStefano Zampini   C->product->destroy    = MatMPIAIJ_MPIDenseDestroy;
5064222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIDense;
5073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5089123193aSHong Zhang }
5099123193aSHong Zhang 
51093aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat, Mat, Mat, const PetscBool);
5119612af27SStefano Zampini 
512f32d5d43SBarry Smith /*
5132636ff26SBarry Smith     Performs an efficient scatter on the rows of B needed by this process; this is
5142636ff26SBarry Smith     a modification of the VecScatterBegin_() routines.
51587753ddeSHong Zhang 
5169612af27SStefano Zampini     Input: If Bbidx = 0, uses B = Bb, else B = Bb1, see MatMatMultSymbolic_MPIAIJ_MPIDense()
517f32d5d43SBarry Smith */
5189612af27SStefano Zampini 
51966976f2fSJacob Faibussowitsch static PetscErrorCode MatMPIDenseScatter(Mat A, Mat B, PetscInt Bbidx, Mat C, Mat *outworkB)
520d71ae5a4SJacob Faibussowitsch {
521f32d5d43SBarry Smith   Mat_MPIAIJ        *aij = (Mat_MPIAIJ *)A->data;
5221683a169SBarry Smith   const PetscScalar *b;
52387753ddeSHong Zhang   PetscScalar       *rvalues;
524f32d5d43SBarry Smith   VecScatter         ctx = aij->Mvctx;
52587753ddeSHong Zhang   const PetscInt    *sindices, *sstarts, *rstarts;
5263515ee7fSJunchao Zhang   const PetscMPIInt *sprocs, *rprocs;
5276718818eSStefano Zampini   PetscInt           i, nsends, nrecvs;
528f32d5d43SBarry Smith   MPI_Request       *swaits, *rwaits;
529ce94432eSBarry Smith   MPI_Comm           comm;
5306718818eSStefano Zampini   PetscMPIInt        tag = ((PetscObject)ctx)->tag, ncols = B->cmap->N, nrows = aij->B->cmap->n, nsends_mpi, nrecvs_mpi;
5314324174eSBarry Smith   MPIAIJ_MPIDense   *contents;
5324324174eSBarry Smith   Mat                workB;
53387753ddeSHong Zhang   MPI_Datatype      *stype, *rtype;
5346718818eSStefano Zampini   PetscInt           blda;
535f32d5d43SBarry Smith 
536f32d5d43SBarry Smith   PetscFunctionBegin;
5376718818eSStefano Zampini   MatCheckProduct(C, 4);
53828b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5396718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
5409566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL /*bs*/));
5419566063dSJacob Faibussowitsch   PetscCall(VecScatterGetRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL /*bs*/));
5429566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nsends, &nsends_mpi));
5439566063dSJacob Faibussowitsch   PetscCall(PetscMPIIntCast(nrecvs, &nrecvs_mpi));
544b45e3bf4SStefano Zampini   if (Bbidx == 0) workB = *outworkB = contents->workB;
545b45e3bf4SStefano Zampini   else workB = *outworkB = contents->workB1;
54608401ef6SPierre Jolivet   PetscCheck(nrows == workB->rmap->n, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Number of rows of workB %" PetscInt_FMT " not equal to columns of aij->B %d", workB->cmap->n, nrows);
5473515ee7fSJunchao Zhang   swaits = contents->swaits;
5483515ee7fSJunchao Zhang   rwaits = contents->rwaits;
549f32d5d43SBarry Smith 
5509566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &b));
5519566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &blda));
55208401ef6SPierre Jolivet   PetscCheck(blda == contents->blda, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cannot reuse an input matrix with lda %" PetscInt_FMT " != %" PetscInt_FMT, blda, contents->blda);
5539566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArray(workB, &rvalues));
554f32d5d43SBarry Smith 
55587753ddeSHong Zhang   /* Post recv, use MPI derived data type to save memory */
5569566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
55787753ddeSHong Zhang   rtype = contents->rtype;
55848a46eb9SPierre Jolivet   for (i = 0; i < nrecvs; i++) PetscCallMPI(MPI_Irecv(rvalues + (rstarts[i] - rstarts[0]), ncols, rtype[i], rprocs[i], tag, comm, rwaits + i));
559f32d5d43SBarry Smith 
56087753ddeSHong Zhang   stype = contents->stype;
56148a46eb9SPierre Jolivet   for (i = 0; i < nsends; i++) PetscCallMPI(MPI_Isend(b, ncols, stype[i], sprocs[i], tag, comm, swaits + i));
5622636ff26SBarry Smith 
5639566063dSJacob Faibussowitsch   if (nrecvs) PetscCallMPI(MPI_Waitall(nrecvs_mpi, rwaits, MPI_STATUSES_IGNORE));
5649566063dSJacob Faibussowitsch   if (nsends) PetscCallMPI(MPI_Waitall(nsends_mpi, swaits, MPI_STATUSES_IGNORE));
565f32d5d43SBarry Smith 
5669566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemote_Private(ctx, PETSC_TRUE /*send*/, &nsends, &sstarts, &sindices, &sprocs, NULL));
5679566063dSJacob Faibussowitsch   PetscCall(VecScatterRestoreRemoteOrdered_Private(ctx, PETSC_FALSE /*recv*/, &nrecvs, &rstarts, NULL, &rprocs, NULL));
5689566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &b));
5699566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArray(workB, &rvalues));
5703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
57187753ddeSHong Zhang }
572f32d5d43SBarry Smith 
573d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A, Mat B, Mat C)
574d71ae5a4SJacob Faibussowitsch {
575f32d5d43SBarry Smith   Mat_MPIAIJ      *aij    = (Mat_MPIAIJ *)A->data;
576f32d5d43SBarry Smith   Mat_MPIDense    *bdense = (Mat_MPIDense *)B->data;
577f32d5d43SBarry Smith   Mat_MPIDense    *cdense = (Mat_MPIDense *)C->data;
578f32d5d43SBarry Smith   Mat              workB;
57987753ddeSHong Zhang   MPIAIJ_MPIDense *contents;
5809123193aSHong Zhang 
5819123193aSHong Zhang   PetscFunctionBegin;
5826718818eSStefano Zampini   MatCheckProduct(C, 3);
58328b400f6SJacob Faibussowitsch   PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty");
5846718818eSStefano Zampini   contents = (MPIAIJ_MPIDense *)C->product->data;
585f32d5d43SBarry Smith   /* diagonal block of A times all local rows of B */
5865ea7661aSPierre Jolivet   /* TODO: this calls a symbolic multiplication every time, which could be avoided */
5879566063dSJacob Faibussowitsch   PetscCall(MatMatMult(aij->A, bdense->A, MAT_REUSE_MATRIX, PETSC_DEFAULT, &cdense->A));
5885ea7661aSPierre Jolivet   if (contents->workB->cmap->n == B->cmap->N) {
58987753ddeSHong Zhang     /* get off processor parts of B needed to complete C=A*B */
5909566063dSJacob Faibussowitsch     PetscCall(MatMPIDenseScatter(A, B, 0, C, &workB));
591f32d5d43SBarry Smith 
592f32d5d43SBarry Smith     /* off-diagonal block of A times nonlocal rows of B */
5939566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
59487753ddeSHong Zhang   } else {
5955ea7661aSPierre Jolivet     Mat       Bb, Cb;
5965ea7661aSPierre Jolivet     PetscInt  BN = B->cmap->N, n = contents->workB->cmap->n, i;
597664c1e85SStefano Zampini     PetscBool ccpu;
59887753ddeSHong Zhang 
59908401ef6SPierre Jolivet     PetscCheck(n > 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Column block size %" PetscInt_FMT " must be positive", n);
600664c1e85SStefano Zampini     /* Prevent from unneeded copies back and forth from the GPU
601664c1e85SStefano Zampini        when getting and restoring the submatrix
602664c1e85SStefano Zampini        We need a proper GPU code for AIJ * dense in parallel */
6039566063dSJacob Faibussowitsch     PetscCall(MatBoundToCPU(C, &ccpu));
6049566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, PETSC_TRUE));
6055ea7661aSPierre Jolivet     for (i = 0; i < BN; i += n) {
606a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(B, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Bb));
607a2748737SPierre Jolivet       PetscCall(MatDenseGetSubMatrix(C, PETSC_DECIDE, PETSC_DECIDE, i, PetscMin(i + n, BN), &Cb));
60887753ddeSHong Zhang 
6095ea7661aSPierre Jolivet       /* get off processor parts of B needed to complete C=A*B */
6109566063dSJacob Faibussowitsch       PetscCall(MatMPIDenseScatter(A, Bb, (i + n) > BN, C, &workB));
6115ea7661aSPierre Jolivet 
6125ea7661aSPierre Jolivet       /* off-diagonal block of A times nonlocal rows of B */
6135ea7661aSPierre Jolivet       cdense = (Mat_MPIDense *)Cb->data;
6149566063dSJacob Faibussowitsch       PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B, workB, cdense->A, PETSC_TRUE));
6159566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(B, &Bb));
6169566063dSJacob Faibussowitsch       PetscCall(MatDenseRestoreSubMatrix(C, &Cb));
61787753ddeSHong Zhang     }
6189566063dSJacob Faibussowitsch     PetscCall(MatBindToCPU(C, ccpu));
61987753ddeSHong Zhang   }
6203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6219123193aSHong Zhang }
622cf1a0672SHong Zhang 
623d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A, Mat P, Mat C)
624d71ae5a4SJacob Faibussowitsch {
625cf1a0672SHong Zhang   Mat_MPIAIJ        *a = (Mat_MPIAIJ *)A->data, *c = (Mat_MPIAIJ *)C->data;
626*f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data;
627*f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *cd = (Mat_SeqAIJ *)c->A->data, *co = (Mat_SeqAIJ *)c->B->data;
628cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj, *aoi = ao->i, *aoj;
629cf1a0672SHong Zhang   PetscScalar       *ada, *aoa, *cda = cd->a, *coa = co->a;
630cf1a0672SHong Zhang   Mat_SeqAIJ        *p_loc, *p_oth;
631cf1a0672SHong Zhang   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *pj;
63229825010SHong Zhang   PetscScalar       *pa_loc, *pa_oth, *pa, valtmp, *ca;
63329825010SHong Zhang   PetscInt           cm = C->rmap->n, anz, pnz;
6346718818eSStefano Zampini   Mat_APMPI         *ptap;
63580da8df7SHong Zhang   PetscScalar       *apa_sparse;
636ce496241SStefano Zampini   const PetscScalar *dummy;
637cf1a0672SHong Zhang   PetscInt          *api, *apj, *apJ, i, j, k, row;
63829825010SHong Zhang   PetscInt           cstart = C->cmap->rstart;
63929825010SHong Zhang   PetscInt           cdnz, conz, k0, k1, nextp;
640a7c7454dSHong Zhang   MPI_Comm           comm;
641a7c7454dSHong Zhang   PetscMPIInt        size;
6421634b032SHong Zhang 
6431634b032SHong Zhang   PetscFunctionBegin;
6446718818eSStefano Zampini   MatCheckProduct(C, 3);
6456718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
64628b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
6479566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
6489566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
649aed4548fSBarry Smith   PetscCheck(ptap->P_oth || size <= 1, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "AP cannot be reused. Do not call MatProductClear()");
650a7c7454dSHong Zhang 
65165e4b4d4SStefano Zampini   /* flag CPU mask for C */
65265e4b4d4SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
65365e4b4d4SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
65465e4b4d4SStefano Zampini   if (c->A->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->A->offloadmask = PETSC_OFFLOAD_CPU;
65565e4b4d4SStefano Zampini   if (c->B->offloadmask != PETSC_OFFLOAD_UNALLOCATED) c->B->offloadmask = PETSC_OFFLOAD_CPU;
65665e4b4d4SStefano Zampini #endif
65780da8df7SHong Zhang   apa_sparse = ptap->apa;
65880da8df7SHong Zhang 
659cf1a0672SHong Zhang   /* 1) get P_oth = ptap->P_oth  and P_loc = ptap->P_loc */
660cf1a0672SHong Zhang   /* update numerical values of P_oth and P_loc */
6619566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_REUSE_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
6629566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_REUSE_MATRIX, &ptap->P_loc));
663cf1a0672SHong Zhang 
664cf1a0672SHong Zhang   /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */
665cf1a0672SHong Zhang   /* get data from symbolic products */
666*f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
6679371c9d4SSatish Balay   pi_loc = p_loc->i;
6689371c9d4SSatish Balay   pj_loc = p_loc->j;
6699371c9d4SSatish Balay   pa_loc = p_loc->a;
670a7c7454dSHong Zhang   if (size > 1) {
671*f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
6729371c9d4SSatish Balay     pi_oth = p_oth->i;
6739371c9d4SSatish Balay     pj_oth = p_oth->j;
6749371c9d4SSatish Balay     pa_oth = p_oth->a;
67520e3dc75SHong Zhang   } else {
6769371c9d4SSatish Balay     p_oth  = NULL;
6779371c9d4SSatish Balay     pi_oth = NULL;
6789371c9d4SSatish Balay     pj_oth = NULL;
6799371c9d4SSatish Balay     pa_oth = NULL;
680a7c7454dSHong Zhang   }
681cf1a0672SHong Zhang 
682ce496241SStefano Zampini   /* trigger copy to CPU */
6839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->A, &dummy));
6849566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->A, &dummy));
6859566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(a->B, &dummy));
6869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(a->B, &dummy));
68729825010SHong Zhang   api = ptap->api;
68829825010SHong Zhang   apj = ptap->apj;
689cf1a0672SHong Zhang   for (i = 0; i < cm; i++) {
69029825010SHong Zhang     apJ = apj + api[i];
69129825010SHong Zhang 
692cf1a0672SHong Zhang     /* diagonal portion of A */
693cf1a0672SHong Zhang     anz = adi[i + 1] - adi[i];
694cf1a0672SHong Zhang     adj = ad->j + adi[i];
695cf1a0672SHong Zhang     ada = ad->a + adi[i];
696cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
697cf1a0672SHong Zhang       row = adj[j];
698cf1a0672SHong Zhang       pnz = pi_loc[row + 1] - pi_loc[row];
699cf1a0672SHong Zhang       pj  = pj_loc + pi_loc[row];
700cf1a0672SHong Zhang       pa  = pa_loc + pi_loc[row];
70129825010SHong Zhang       /* perform sparse axpy */
702cf1a0672SHong Zhang       valtmp = ada[j];
70329825010SHong Zhang       nextp  = 0;
70429825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
70529825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
70629825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
70729825010SHong Zhang         }
7081634b032SHong Zhang       }
7099566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
710cf1a0672SHong Zhang     }
7111634b032SHong Zhang 
712cf1a0672SHong Zhang     /* off-diagonal portion of A */
713cf1a0672SHong Zhang     anz = aoi[i + 1] - aoi[i];
7148e3a54c0SPierre Jolivet     aoj = PetscSafePointerPlusOffset(ao->j, aoi[i]);
7158e3a54c0SPierre Jolivet     aoa = PetscSafePointerPlusOffset(ao->a, aoi[i]);
716cf1a0672SHong Zhang     for (j = 0; j < anz; j++) {
717cf1a0672SHong Zhang       row = aoj[j];
718cf1a0672SHong Zhang       pnz = pi_oth[row + 1] - pi_oth[row];
719cf1a0672SHong Zhang       pj  = pj_oth + pi_oth[row];
720cf1a0672SHong Zhang       pa  = pa_oth + pi_oth[row];
72129825010SHong Zhang       /* perform sparse axpy */
722cf1a0672SHong Zhang       valtmp = aoa[j];
72329825010SHong Zhang       nextp  = 0;
72429825010SHong Zhang       for (k = 0; nextp < pnz; k++) {
72529825010SHong Zhang         if (apJ[k] == pj[nextp]) { /* column of AP == column of P */
72629825010SHong Zhang           apa_sparse[k] += valtmp * pa[nextp++];
72729825010SHong Zhang         }
728cf1a0672SHong Zhang       }
7299566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * pnz));
730cf1a0672SHong Zhang     }
7311634b032SHong Zhang 
732cf1a0672SHong Zhang     /* set values in C */
733cf1a0672SHong Zhang     cdnz = cd->i[i + 1] - cd->i[i];
734cf1a0672SHong Zhang     conz = co->i[i + 1] - co->i[i];
7351634b032SHong Zhang 
736910cf402Sprj-     /* 1st off-diagonal part of C */
7378e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
738cf1a0672SHong Zhang     k  = 0;
739cf1a0672SHong Zhang     for (k0 = 0; k0 < conz; k0++) {
740cf1a0672SHong Zhang       if (apJ[k] >= cstart) break;
74129825010SHong Zhang       ca[k0]        = apa_sparse[k];
74229825010SHong Zhang       apa_sparse[k] = 0.0;
743cf1a0672SHong Zhang       k++;
744cf1a0672SHong Zhang     }
7451634b032SHong Zhang 
746cf1a0672SHong Zhang     /* diagonal part of C */
747cf1a0672SHong Zhang     ca = cda + cd->i[i];
748cf1a0672SHong Zhang     for (k1 = 0; k1 < cdnz; k1++) {
74929825010SHong Zhang       ca[k1]        = apa_sparse[k];
75029825010SHong Zhang       apa_sparse[k] = 0.0;
751cf1a0672SHong Zhang       k++;
752cf1a0672SHong Zhang     }
753cf1a0672SHong Zhang 
754910cf402Sprj-     /* 2nd off-diagonal part of C */
7558e3a54c0SPierre Jolivet     ca = PetscSafePointerPlusOffset(coa, co->i[i]);
756cf1a0672SHong Zhang     for (; k0 < conz; k0++) {
75729825010SHong Zhang       ca[k0]        = apa_sparse[k];
75829825010SHong Zhang       apa_sparse[k] = 0.0;
759cf1a0672SHong Zhang       k++;
760cf1a0672SHong Zhang     }
761cf1a0672SHong Zhang   }
7629566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
7639566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
7643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
765cf1a0672SHong Zhang }
766cf1a0672SHong Zhang 
7670fc8cf34SHong Zhang /* same as MatMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(), except using LLCondensed to avoid O(BN) memory requirement */
768d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A, Mat P, PetscReal fill, Mat C)
769d71ae5a4SJacob Faibussowitsch {
770ce94432eSBarry Smith   MPI_Comm           comm;
771a7c7454dSHong Zhang   PetscMPIInt        size;
7723cdca5ebSHong Zhang   Mat_APMPI         *ptap;
7730298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
7746718818eSStefano Zampini   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
775*f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc, *p_oth;
7767dbaa2c6Sandi selinger   PetscInt          *pi_loc, *pj_loc, *pi_oth, *pj_oth, *dnz, *onz;
777cf1a0672SHong Zhang   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, *aoj = ao->j, rstart = A->rmap->rstart;
7788c78258cSHong Zhang   PetscInt           i, pnz, row, *api, *apj, *Jptr, apnz, nspacedouble = 0, j, nzi, *lnk, apnz_max = 1;
779e5ab8c0aSKarl Rupp   PetscInt           am = A->rmap->n, pn = P->cmap->n, pm = P->rmap->n, lsize = pn + 20;
780cf1a0672SHong Zhang   PetscReal          afill;
781b92f168fSBarry Smith   MatType            mtype;
782cf1a0672SHong Zhang 
783cf1a0672SHong Zhang   PetscFunctionBegin;
7846718818eSStefano Zampini   MatCheckProduct(C, 4);
78528b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
7869566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
7879566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
788a7c7454dSHong Zhang 
7893cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
7909566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
791cf1a0672SHong Zhang 
792cf1a0672SHong Zhang   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
7939566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
79419f0e57aSHong Zhang 
795cf1a0672SHong Zhang   /* get P_loc by taking all local rows of P */
7969566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
797cf1a0672SHong Zhang 
798*f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
7999371c9d4SSatish Balay   pi_loc = p_loc->i;
8009371c9d4SSatish Balay   pj_loc = p_loc->j;
801a7c7454dSHong Zhang   if (size > 1) {
802*f4f49eeaSPierre Jolivet     p_oth  = (Mat_SeqAIJ *)ptap->P_oth->data;
8039371c9d4SSatish Balay     pi_oth = p_oth->i;
8049371c9d4SSatish Balay     pj_oth = p_oth->j;
805968382fdSHong Zhang   } else {
80620e3dc75SHong Zhang     p_oth  = NULL;
8079371c9d4SSatish Balay     pi_oth = NULL;
8089371c9d4SSatish Balay     pj_oth = NULL;
809a7c7454dSHong Zhang   }
810cf1a0672SHong Zhang 
811cf1a0672SHong Zhang   /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */
8129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
813cf1a0672SHong Zhang   ptap->api = api;
814cf1a0672SHong Zhang   api[0]    = 0;
815cf1a0672SHong Zhang 
8169566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(lsize, &lnk));
817cf1a0672SHong Zhang 
818cf1a0672SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
8199566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space));
820cf1a0672SHong Zhang   current_space = free_space;
821d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
822cf1a0672SHong Zhang   for (i = 0; i < am; i++) {
823cf1a0672SHong Zhang     /* diagonal portion of A */
824cf1a0672SHong Zhang     nzi = adi[i + 1] - adi[i];
825cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
826cf1a0672SHong Zhang       row  = *adj++;
827cf1a0672SHong Zhang       pnz  = pi_loc[row + 1] - pi_loc[row];
828cf1a0672SHong Zhang       Jptr = pj_loc + pi_loc[row];
8298a210135Sandi selinger       /* Expand list if it is not long enough */
8308328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8318328dd82Sandi selinger         lsize = pnz + apnz_max;
8329566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8338a210135Sandi selinger       }
834cf1a0672SHong Zhang       /* add non-zero cols of P into the sorted linked list lnk */
8359566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8368a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8378a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8388c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
839cf1a0672SHong Zhang     }
840cf1a0672SHong Zhang     /* off-diagonal portion of A */
841cf1a0672SHong Zhang     nzi = aoi[i + 1] - aoi[i];
842cf1a0672SHong Zhang     for (j = 0; j < nzi; j++) {
843cf1a0672SHong Zhang       row  = *aoj++;
844cf1a0672SHong Zhang       pnz  = pi_oth[row + 1] - pi_oth[row];
845cf1a0672SHong Zhang       Jptr = pj_oth + pi_oth[row];
8468a210135Sandi selinger       /* Expand list if it is not long enough */
8478328dd82Sandi selinger       if (pnz + apnz_max > lsize) {
8488328dd82Sandi selinger         lsize = pnz + apnz_max;
8499566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedExpand_Scalable(lsize, &lnk));
8508a210135Sandi selinger       }
8518a210135Sandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
8529566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(pnz, Jptr, lnk));
8538a210135Sandi selinger       apnz       = *lnk; /* The first element in the list is the number of items in the list */
8548a210135Sandi selinger       api[i + 1] = api[i] + apnz;
8558c78258cSHong Zhang       if (apnz > apnz_max) apnz_max = apnz + 1; /* '1' for diagonal entry */
856cf1a0672SHong Zhang     }
8578c78258cSHong Zhang 
8588c78258cSHong Zhang     /* add missing diagonal entry */
8598c78258cSHong Zhang     if (C->force_diagonals) {
8608c78258cSHong Zhang       j = i + rstart; /* column index */
8619566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &j, lnk));
8628c78258cSHong Zhang     }
8638c78258cSHong Zhang 
864f84c536bSHong Zhang     apnz       = *lnk;
865cf1a0672SHong Zhang     api[i + 1] = api[i] + apnz;
8668a210135Sandi selinger     if (apnz > apnz_max) apnz_max = apnz;
867cf1a0672SHong Zhang 
868cf1a0672SHong Zhang     /* if free space is not available, double the total space in the list */
869cf1a0672SHong Zhang     if (current_space->local_remaining < apnz) {
8709566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(apnz, current_space->total_array_size), &current_space));
871cf1a0672SHong Zhang       nspacedouble++;
872cf1a0672SHong Zhang     }
873cf1a0672SHong Zhang 
874cf1a0672SHong Zhang     /* Copy data into free space, then initialize lnk */
8759566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(apnz, current_space->array, lnk));
8769566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, current_space->array, dnz, onz));
8772205254eSKarl Rupp 
878cf1a0672SHong Zhang     current_space->array += apnz;
879cf1a0672SHong Zhang     current_space->local_used += apnz;
880cf1a0672SHong Zhang     current_space->local_remaining -= apnz;
881cf1a0672SHong Zhang   }
882cf1a0672SHong Zhang 
883cf1a0672SHong Zhang   /* Allocate space for apj, initialize apj, and */
884cf1a0672SHong Zhang   /* destroy list of free space and other temporary array(s) */
8859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(api[am] + 1, &ptap->apj));
886cf1a0672SHong Zhang   apj = ptap->apj;
8879566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, ptap->apj));
8889566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
889cf1a0672SHong Zhang 
8904222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
8919566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
8929566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
8939566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
8949566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
8959566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
896d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
897cf1a0672SHong Zhang 
8984222ddf1SHong Zhang   /* malloc apa for assembly C */
8999566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(apnz_max, &ptap->apa));
90017f75172Sandi selinger 
9019566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
9029566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
9039566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
9049566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
905cf1a0672SHong Zhang 
9064222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ;
9074222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
908cf1a0672SHong Zhang 
9094222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
9106718818eSStefano Zampini   C->product->data    = ptap;
9116718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
912cf1a0672SHong Zhang 
913cf1a0672SHong Zhang   /* set MatInfo */
914118727c9SMark F. Adams   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
915cf1a0672SHong Zhang   if (afill < 1.0) afill = 1.0;
9164222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
9174222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
9184222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
919cf1a0672SHong Zhang 
920cf1a0672SHong Zhang #if defined(PETSC_USE_INFO)
921cf1a0672SHong Zhang   if (api[am]) {
9229566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
9239566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
924cf1a0672SHong Zhang   } else {
9259566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
926cf1a0672SHong Zhang   }
927cf1a0672SHong Zhang #endif
9283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9291634b032SHong Zhang }
930f96d37fcSHong Zhang 
931a9d7e0ccSandi selinger /* This function is needed for the seqMPI matrix-matrix multiplication.  */
932a9d7e0ccSandi selinger /* Three input arrays are merged to one output array. The size of the    */
933a9d7e0ccSandi selinger /* output array is also output. Duplicate entries only show up once.     */
934d71ae5a4SJacob Faibussowitsch static void Merge3SortedArrays(PetscInt size1, PetscInt *in1, PetscInt size2, PetscInt *in2, PetscInt size3, PetscInt *in3, PetscInt *size4, PetscInt *out)
935d71ae5a4SJacob Faibussowitsch {
936a9d7e0ccSandi selinger   int i = 0, j = 0, k = 0, l = 0;
937a9d7e0ccSandi selinger 
938a9d7e0ccSandi selinger   /* Traverse all three arrays */
939a9d7e0ccSandi selinger   while (i < size1 && j < size2 && k < size3) {
940a9d7e0ccSandi selinger     if (in1[i] < in2[j] && in1[i] < in3[k]) {
941a9d7e0ccSandi selinger       out[l++] = in1[i++];
9429371c9d4SSatish Balay     } else if (in2[j] < in1[i] && in2[j] < in3[k]) {
943a9d7e0ccSandi selinger       out[l++] = in2[j++];
9449371c9d4SSatish Balay     } else if (in3[k] < in1[i] && in3[k] < in2[j]) {
945a9d7e0ccSandi selinger       out[l++] = in3[k++];
9469371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] < in3[k]) {
947a9d7e0ccSandi selinger       out[l++] = in1[i];
948a9d7e0ccSandi selinger       i++, j++;
9499371c9d4SSatish Balay     } else if (in1[i] == in3[k] && in1[i] < in2[j]) {
950a9d7e0ccSandi selinger       out[l++] = in1[i];
951a9d7e0ccSandi selinger       i++, k++;
9529371c9d4SSatish Balay     } else if (in3[k] == in2[j] && in2[j] < in1[i]) {
953a9d7e0ccSandi selinger       out[l++] = in2[j];
954a9d7e0ccSandi selinger       k++, j++;
9559371c9d4SSatish Balay     } else if (in1[i] == in2[j] && in1[i] == in3[k]) {
956a9d7e0ccSandi selinger       out[l++] = in1[i];
957a9d7e0ccSandi selinger       i++, j++, k++;
958a9d7e0ccSandi selinger     }
959a9d7e0ccSandi selinger   }
960a9d7e0ccSandi selinger 
961a9d7e0ccSandi selinger   /* Traverse two remaining arrays */
962a9d7e0ccSandi selinger   while (i < size1 && j < size2) {
963a9d7e0ccSandi selinger     if (in1[i] < in2[j]) {
964a9d7e0ccSandi selinger       out[l++] = in1[i++];
9659371c9d4SSatish Balay     } else if (in1[i] > in2[j]) {
966a9d7e0ccSandi selinger       out[l++] = in2[j++];
9679371c9d4SSatish Balay     } else {
968a9d7e0ccSandi selinger       out[l++] = in1[i];
969a9d7e0ccSandi selinger       i++, j++;
970a9d7e0ccSandi selinger     }
971a9d7e0ccSandi selinger   }
972a9d7e0ccSandi selinger 
973a9d7e0ccSandi selinger   while (i < size1 && k < size3) {
974a9d7e0ccSandi selinger     if (in1[i] < in3[k]) {
975a9d7e0ccSandi selinger       out[l++] = in1[i++];
9769371c9d4SSatish Balay     } else if (in1[i] > in3[k]) {
977a9d7e0ccSandi selinger       out[l++] = in3[k++];
9789371c9d4SSatish Balay     } else {
979a9d7e0ccSandi selinger       out[l++] = in1[i];
980a9d7e0ccSandi selinger       i++, k++;
981a9d7e0ccSandi selinger     }
982a9d7e0ccSandi selinger   }
983a9d7e0ccSandi selinger 
984a9d7e0ccSandi selinger   while (k < size3 && j < size2) {
985a9d7e0ccSandi selinger     if (in3[k] < in2[j]) {
986a9d7e0ccSandi selinger       out[l++] = in3[k++];
9879371c9d4SSatish Balay     } else if (in3[k] > in2[j]) {
988a9d7e0ccSandi selinger       out[l++] = in2[j++];
9899371c9d4SSatish Balay     } else {
990a9d7e0ccSandi selinger       out[l++] = in3[k];
991a9d7e0ccSandi selinger       k++, j++;
992a9d7e0ccSandi selinger     }
993a9d7e0ccSandi selinger   }
994a9d7e0ccSandi selinger 
995a9d7e0ccSandi selinger   /* Traverse one remaining array */
996a9d7e0ccSandi selinger   while (i < size1) out[l++] = in1[i++];
997a9d7e0ccSandi selinger   while (j < size2) out[l++] = in2[j++];
998a9d7e0ccSandi selinger   while (k < size3) out[l++] = in3[k++];
999a9d7e0ccSandi selinger 
1000a9d7e0ccSandi selinger   *size4 = l;
1001a9d7e0ccSandi selinger }
1002a9d7e0ccSandi selinger 
100373b67375Sandi selinger /* This matrix-matrix multiplication algorithm divides the multiplication into three multiplications and  */
100473b67375Sandi selinger /* adds up the products. Two of these three multiplications are performed with existing (sequential)      */
100573b67375Sandi selinger /* matrix-matrix multiplications.  */
1006d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_seqMPI(Mat A, Mat P, PetscReal fill, Mat C)
1007d71ae5a4SJacob Faibussowitsch {
1008a9d7e0ccSandi selinger   MPI_Comm           comm;
1009a9d7e0ccSandi selinger   PetscMPIInt        size;
10103cdca5ebSHong Zhang   Mat_APMPI         *ptap;
1011a9d7e0ccSandi selinger   PetscFreeSpaceList free_space_diag = NULL, current_space = NULL;
1012a9d7e0ccSandi selinger   Mat_MPIAIJ        *a  = (Mat_MPIAIJ *)A->data;
1013*f4f49eeaSPierre Jolivet   Mat_SeqAIJ        *ad = (Mat_SeqAIJ *)a->A->data, *ao = (Mat_SeqAIJ *)a->B->data, *p_loc;
1014a9d7e0ccSandi selinger   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1015a9d7e0ccSandi selinger   Mat_SeqAIJ        *adpd_seq, *p_off, *aopoth_seq;
1016a9d7e0ccSandi selinger   PetscInt           adponz, adpdnz;
10177dbaa2c6Sandi selinger   PetscInt          *pi_loc, *dnz, *onz;
1018a9d7e0ccSandi selinger   PetscInt          *adi = ad->i, *adj = ad->j, *aoi = ao->i, rstart = A->rmap->rstart;
10199371c9d4SSatish Balay   PetscInt          *lnk, i, i1 = 0, pnz, row, *adpoi, *adpoj, *api, *adpoJ, *aopJ, *apJ, *Jptr, aopnz, nspacedouble = 0, j, nzi, *apj, apnz, *adpdi, *adpdj, *adpdJ, *poff_i, *poff_j, *j_temp, *aopothi, *aopothj;
1020a016958eSandi selinger   PetscInt           am = A->rmap->n, pN = P->cmap->N, pn = P->cmap->n, pm = P->rmap->n, p_colstart, p_colend;
1021a9d7e0ccSandi selinger   PetscBT            lnkbt;
1022a9d7e0ccSandi selinger   PetscReal          afill;
1023a9d7e0ccSandi selinger   PetscMPIInt        rank;
1024a9d7e0ccSandi selinger   Mat                adpd, aopoth;
1025b92f168fSBarry Smith   MatType            mtype;
1026e83e5f86SFande Kong   const char        *prefix;
1027a9d7e0ccSandi selinger 
1028a9d7e0ccSandi selinger   PetscFunctionBegin;
10296718818eSStefano Zampini   MatCheckProduct(C, 4);
103028b400f6SJacob Faibussowitsch   PetscCheck(!C->product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
10319566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
10329566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
10339566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
10349566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRangeColumn(P, &p_colstart, &p_colend));
1035a9d7e0ccSandi selinger 
10363cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
10379566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1038a9d7e0ccSandi selinger 
1039a9d7e0ccSandi selinger   /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */
10409566063dSJacob Faibussowitsch   PetscCall(MatGetBrowsOfAoCols_MPIAIJ(A, P, MAT_INITIAL_MATRIX, &ptap->startsj_s, &ptap->startsj_r, &ptap->bufa, &ptap->P_oth));
1041a9d7e0ccSandi selinger 
1042a9d7e0ccSandi selinger   /* get P_loc by taking all local rows of P */
10439566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(P, MAT_INITIAL_MATRIX, &ptap->P_loc));
1044a9d7e0ccSandi selinger 
1045*f4f49eeaSPierre Jolivet   p_loc  = (Mat_SeqAIJ *)ptap->P_loc->data;
1046a9d7e0ccSandi selinger   pi_loc = p_loc->i;
1047a9d7e0ccSandi selinger 
1048a9d7e0ccSandi selinger   /* Allocate memory for the i arrays of the matrices A*P, A_diag*P_off and A_offd * P */
10499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &api));
10509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &adpoi));
1051a9d7e0ccSandi selinger 
1052a9d7e0ccSandi selinger   adpoi[0]  = 0;
1053a9d7e0ccSandi selinger   ptap->api = api;
1054a9d7e0ccSandi selinger   api[0]    = 0;
1055a9d7e0ccSandi selinger 
1056a9d7e0ccSandi selinger   /* create and initialize a linked list, will be used for both A_diag * P_loc_off and A_offd * P_oth */
10579566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(pN, pN, &lnk, &lnkbt));
1058d0609cedSBarry Smith   MatPreallocateBegin(comm, am, pn, dnz, onz);
1059a9d7e0ccSandi selinger 
1060a9d7e0ccSandi selinger   /* Symbolic calc of A_loc_diag * P_loc_diag */
10619566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10629566063dSJacob Faibussowitsch   PetscCall(MatProductCreate(a->A, p->A, NULL, &adpd));
10639566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
10649566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(adpd, prefix));
10659566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(adpd, "inner_diag_"));
10664222ddf1SHong Zhang 
10679566063dSJacob Faibussowitsch   PetscCall(MatProductSetType(adpd, MATPRODUCT_AB));
10689566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(adpd, "sorted"));
10699566063dSJacob Faibussowitsch   PetscCall(MatProductSetFill(adpd, fill));
10709566063dSJacob Faibussowitsch   PetscCall(MatProductSetFromOptions(adpd));
10718c78258cSHong Zhang 
10728c78258cSHong Zhang   adpd->force_diagonals = C->force_diagonals;
10739566063dSJacob Faibussowitsch   PetscCall(MatProductSymbolic(adpd));
10744222ddf1SHong Zhang 
1075a9d7e0ccSandi selinger   adpd_seq = (Mat_SeqAIJ *)((adpd)->data);
10769371c9d4SSatish Balay   adpdi    = adpd_seq->i;
10779371c9d4SSatish Balay   adpdj    = adpd_seq->j;
1078*f4f49eeaSPierre Jolivet   p_off    = (Mat_SeqAIJ *)p->B->data;
10799371c9d4SSatish Balay   poff_i   = p_off->i;
10809371c9d4SSatish Balay   poff_j   = p_off->j;
1081a9d7e0ccSandi selinger 
108273b67375Sandi selinger   /* j_temp stores indices of a result row before they are added to the linked list */
10839566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pN + 2, &j_temp));
1084a9d7e0ccSandi selinger 
1085a9d7e0ccSandi selinger   /* Symbolic calc of the A_diag * p_loc_off */
1086a9d7e0ccSandi selinger   /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */
10879566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(adi[am], PetscIntSumTruncate(aoi[am], pi_loc[pm]))), &free_space_diag));
1088a9d7e0ccSandi selinger   current_space = free_space_diag;
1089a9d7e0ccSandi selinger 
1090a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1091a9d7e0ccSandi selinger     /* A_diag * P_loc_off */
1092a9d7e0ccSandi selinger     nzi = adi[i + 1] - adi[i];
1093a9d7e0ccSandi selinger     for (j = 0; j < nzi; j++) {
1094a9d7e0ccSandi selinger       row  = *adj++;
1095a9d7e0ccSandi selinger       pnz  = poff_i[row + 1] - poff_i[row];
1096a9d7e0ccSandi selinger       Jptr = poff_j + poff_i[row];
1097ad540459SPierre Jolivet       for (i1 = 0; i1 < pnz; i1++) j_temp[i1] = p->garray[Jptr[i1]];
1098a9d7e0ccSandi selinger       /* add non-zero cols of P into the sorted linked list lnk */
10999566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(pnz, j_temp, lnk, lnkbt));
1100a9d7e0ccSandi selinger     }
1101a9d7e0ccSandi selinger 
1102a9d7e0ccSandi selinger     adponz       = lnk[0];
1103a9d7e0ccSandi selinger     adpoi[i + 1] = adpoi[i] + adponz;
1104a9d7e0ccSandi selinger 
1105a9d7e0ccSandi selinger     /* if free space is not available, double the total space in the list */
1106a9d7e0ccSandi selinger     if (current_space->local_remaining < adponz) {
11079566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(adponz, current_space->total_array_size), &current_space));
1108a9d7e0ccSandi selinger       nspacedouble++;
1109a9d7e0ccSandi selinger     }
1110a9d7e0ccSandi selinger 
1111a9d7e0ccSandi selinger     /* Copy data into free space, then initialize lnk */
11129566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(pN, adponz, current_space->array, lnk, lnkbt));
1113a9d7e0ccSandi selinger 
1114a9d7e0ccSandi selinger     current_space->array += adponz;
1115a9d7e0ccSandi selinger     current_space->local_used += adponz;
1116a9d7e0ccSandi selinger     current_space->local_remaining -= adponz;
1117a9d7e0ccSandi selinger   }
1118a9d7e0ccSandi selinger 
1119a9d7e0ccSandi selinger   /* Symbolic calc of A_off * P_oth */
11209566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(a->B, prefix));
11219566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(a->B, "inner_offdiag_"));
11229566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &aopoth));
11239566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(a->B, ptap->P_oth, fill, aopoth));
1124a9d7e0ccSandi selinger   aopoth_seq = (Mat_SeqAIJ *)((aopoth)->data);
11259371c9d4SSatish Balay   aopothi    = aopoth_seq->i;
11269371c9d4SSatish Balay   aopothj    = aopoth_seq->j;
1127a9d7e0ccSandi selinger 
1128a9d7e0ccSandi selinger   /* Allocate space for apj, adpj, aopj, ... */
1129a9d7e0ccSandi selinger   /* destroy lists of free space and other temporary array(s) */
1130a9d7e0ccSandi selinger 
11319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(aopothi[am] + adpoi[am] + adpdi[am] + 2, &ptap->apj));
11329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(adpoi[am] + 2, &adpoj));
1133a9d7e0ccSandi selinger 
1134a9d7e0ccSandi selinger   /* Copy from linked list to j-array */
11359566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space_diag, adpoj));
11369566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
1137a9d7e0ccSandi selinger 
1138a9d7e0ccSandi selinger   adpoJ = adpoj;
1139a9d7e0ccSandi selinger   adpdJ = adpdj;
1140a9d7e0ccSandi selinger   aopJ  = aopothj;
1141a9d7e0ccSandi selinger   apj   = ptap->apj;
1142a9d7e0ccSandi selinger   apJ   = apj; /* still empty */
1143a9d7e0ccSandi selinger 
1144a9d7e0ccSandi selinger   /* Merge j-arrays of A_off * P, A_diag * P_loc_off, and */
1145a9d7e0ccSandi selinger   /* A_diag * P_loc_diag to get A*P */
1146a9d7e0ccSandi selinger   for (i = 0; i < am; i++) {
1147a9d7e0ccSandi selinger     aopnz  = aopothi[i + 1] - aopothi[i];
1148a9d7e0ccSandi selinger     adponz = adpoi[i + 1] - adpoi[i];
1149a9d7e0ccSandi selinger     adpdnz = adpdi[i + 1] - adpdi[i];
1150a9d7e0ccSandi selinger 
1151a9d7e0ccSandi selinger     /* Correct indices from A_diag*P_diag */
1152ad540459SPierre Jolivet     for (i1 = 0; i1 < adpdnz; i1++) adpdJ[i1] += p_colstart;
1153a9d7e0ccSandi selinger     /* Merge j-arrays of A_diag * P_loc_off and A_diag * P_loc_diag and A_off * P_oth */
1154a9d7e0ccSandi selinger     Merge3SortedArrays(adponz, adpoJ, adpdnz, adpdJ, aopnz, aopJ, &apnz, apJ);
11559566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + rstart, apnz, apJ, dnz, onz));
1156a9d7e0ccSandi selinger 
1157a9d7e0ccSandi selinger     aopJ += aopnz;
1158a9d7e0ccSandi selinger     adpoJ += adponz;
1159a9d7e0ccSandi selinger     adpdJ += adpdnz;
1160a9d7e0ccSandi selinger     apJ += apnz;
1161a9d7e0ccSandi selinger     api[i + 1] = api[i] + apnz;
1162a9d7e0ccSandi selinger   }
1163a9d7e0ccSandi selinger 
1164a9d7e0ccSandi selinger   /* malloc apa to store dense row A[i,:]*P */
11659566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(pN + 2, &ptap->apa));
1166a9d7e0ccSandi selinger 
11674222ddf1SHong Zhang   /* create and assemble symbolic parallel matrix C */
11689566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, am, pn, PETSC_DETERMINE, PETSC_DETERMINE));
11699566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, P));
11709566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
11719566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
11729566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1173d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
117417f75172Sandi selinger 
11759566063dSJacob Faibussowitsch   PetscCall(MatSetValues_MPIAIJ_CopyFromCSRFormat_Symbolic(C, apj, api));
11769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
11779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
11789566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
117917f75172Sandi selinger 
11804222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
11814222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AB;
1182a9d7e0ccSandi selinger 
11834222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
11846718818eSStefano Zampini   C->product->data    = ptap;
11856718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_MatMatMult;
1186a9d7e0ccSandi selinger 
1187a9d7e0ccSandi selinger   /* set MatInfo */
118873b67375Sandi selinger   afill = (PetscReal)api[am] / (adi[am] + aoi[am] + pi_loc[pm] + 1) + 1.e-5;
118973b67375Sandi selinger   if (afill < 1.0) afill = 1.0;
11904222ddf1SHong Zhang   C->info.mallocs           = nspacedouble;
11914222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
11924222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1193a9d7e0ccSandi selinger 
1194a9d7e0ccSandi selinger #if defined(PETSC_USE_INFO)
1195a9d7e0ccSandi selinger   if (api[am]) {
11969566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
11979566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1198a9d7e0ccSandi selinger   } else {
11999566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1200a9d7e0ccSandi selinger   }
1201a9d7e0ccSandi selinger #endif
1202a9d7e0ccSandi selinger 
12039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&aopoth));
12049566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&adpd));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(j_temp));
12069566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoj));
12079566063dSJacob Faibussowitsch   PetscCall(PetscFree(adpoi));
12083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1209a9d7e0ccSandi selinger }
1210a9d7e0ccSandi selinger 
1211c216dbf3SHong Zhang /* This routine only works when scall=MAT_REUSE_MATRIX! */
1212d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult(Mat P, Mat A, Mat C)
1213d71ae5a4SJacob Faibussowitsch {
12146718818eSStefano Zampini   Mat_APMPI *ptap;
121560552ceaSHong Zhang   Mat        Pt;
1216c216dbf3SHong Zhang 
1217c216dbf3SHong Zhang   PetscFunctionBegin;
12186718818eSStefano Zampini   MatCheckProduct(C, 3);
12196718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
122028b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
122128b400f6SJacob Faibussowitsch   PetscCheck(ptap->Pt, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
122260552ceaSHong Zhang 
122360552ceaSHong Zhang   Pt = ptap->Pt;
12241cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(P, Pt));
12259566063dSJacob Faibussowitsch   PetscCall(MatTranspose(P, MAT_REUSE_MATRIX, &Pt));
12269566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumeric_MPIAIJ_MPIAIJ(Pt, A, C));
12273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1228f96d37fcSHong Zhang }
1229f96d37fcSHong Zhang 
1230c5af039cSHong Zhang /* This routine is modified from MatPtAPSymbolic_MPIAIJ_MPIAIJ() */
1231d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, PetscReal fill, Mat C)
1232d71ae5a4SJacob Faibussowitsch {
12333cdca5ebSHong Zhang   Mat_APMPI               *ptap;
12346718818eSStefano Zampini   Mat_MPIAIJ              *p = (Mat_MPIAIJ *)P->data;
1235912837bbSHong Zhang   MPI_Comm                 comm;
1236912837bbSHong Zhang   PetscMPIInt              size, rank;
1237912837bbSHong Zhang   PetscFreeSpaceList       free_space = NULL, current_space = NULL;
12384ede91e3SHong Zhang   PetscInt                 pn = P->cmap->n, aN = A->cmap->N, an = A->cmap->n;
123969be949aSStefano Zampini   PetscInt                *lnk, i, k, nsend, rstart;
1240912837bbSHong Zhang   PetscBT                  lnkbt;
1241ec4bef21SJose E. Roman   PetscMPIInt              tagi, tagj, *len_si, *len_s, *len_ri, nrecv;
1242ec4bef21SJose E. Roman   PETSC_UNUSED PetscMPIInt icompleted = 0;
12438c78258cSHong Zhang   PetscInt               **buf_rj, **buf_ri, **buf_ri_k, row, ncols, *cols;
12447f3e1f30SHong Zhang   PetscInt                 len, proc, *dnz, *onz, *owners, nzi;
1245912837bbSHong Zhang   PetscInt                 nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1246912837bbSHong Zhang   MPI_Request             *swaits, *rwaits;
1247912837bbSHong Zhang   MPI_Status              *sstatus, rstatus;
1248912837bbSHong Zhang   PetscLayout              rowmap;
1249912837bbSHong Zhang   PetscInt                *owners_co, *coi, *coj; /* i and j array of (p->B)^T*A*P - used in the communication */
1250912837bbSHong Zhang   PetscMPIInt             *len_r, *id_r;          /* array of length of comm->size, store send/recv matrix values */
12517f3e1f30SHong Zhang   PetscInt                *Jptr, *prmap = p->garray, con, j, Crmax;
12524ede91e3SHong Zhang   Mat_SeqAIJ              *a_loc, *c_loc, *c_oth;
1253eec179cfSJacob Faibussowitsch   PetscHMapI               ta;
1254b92f168fSBarry Smith   MatType                  mtype;
1255e83e5f86SFande Kong   const char              *prefix;
1256912837bbSHong Zhang 
1257912837bbSHong Zhang   PetscFunctionBegin;
12589566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
12599566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
12609566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1261912837bbSHong Zhang 
12624222ddf1SHong Zhang   /* create symbolic parallel matrix C */
12639566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
12649566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
1265912837bbSHong Zhang 
12664222ddf1SHong Zhang   C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable;
1267912837bbSHong Zhang 
12683cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
12699566063dSJacob Faibussowitsch   PetscCall(PetscNew(&ptap));
1270912837bbSHong Zhang 
1271912837bbSHong Zhang   /* (0) compute Rd = Pd^T, Ro = Po^T  */
1272acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_INITIAL_MATRIX, &ptap->Rd));
1273acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_INITIAL_MATRIX, &ptap->Ro));
1274912837bbSHong Zhang 
1275669e9c86SHong Zhang   /* (1) compute symbolic A_loc */
12769566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &ptap->A_loc));
1277912837bbSHong Zhang 
12784ede91e3SHong Zhang   /* (2-1) compute symbolic C_oth = Ro*A_loc  */
12799566063dSJacob Faibussowitsch   PetscCall(MatGetOptionsPrefix(A, &prefix));
12809566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Ro, prefix));
12819566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Ro, "inner_offdiag_"));
12829566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_oth));
12839566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Ro, ptap->A_loc, fill, ptap->C_oth));
1284912837bbSHong Zhang 
1285912837bbSHong Zhang   /* (3) send coj of C_oth to other processors  */
1286912837bbSHong Zhang   /* determine row ownership */
12879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &rowmap));
1288912837bbSHong Zhang   rowmap->n  = pn;
1289912837bbSHong Zhang   rowmap->bs = 1;
12909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(rowmap));
1291912837bbSHong Zhang   owners = rowmap->range;
1292912837bbSHong Zhang 
1293912837bbSHong Zhang   /* determine the number of messages to send, their lengths */
12949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(size, &len_s, size, &len_si, size, &sstatus, size + 2, &owners_co));
12959566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_s, size));
12969566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(len_si, size));
1297912837bbSHong Zhang 
1298912837bbSHong Zhang   c_oth = (Mat_SeqAIJ *)ptap->C_oth->data;
12999371c9d4SSatish Balay   coi   = c_oth->i;
13009371c9d4SSatish Balay   coj   = c_oth->j;
1301912837bbSHong Zhang   con   = ptap->C_oth->rmap->n;
1302912837bbSHong Zhang   proc  = 0;
1303912837bbSHong Zhang   for (i = 0; i < con; i++) {
1304912837bbSHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
13057f3e1f30SHong Zhang     len_si[proc]++;                     /* num of rows in Co(=Pt*A) to be sent to [proc] */
1306912837bbSHong Zhang     len_s[proc] += coi[i + 1] - coi[i]; /* num of nonzeros in Co to be sent to [proc] */
1307912837bbSHong Zhang   }
1308912837bbSHong Zhang 
1309912837bbSHong Zhang   len          = 0; /* max length of buf_si[], see (4) */
1310912837bbSHong Zhang   owners_co[0] = 0;
1311912837bbSHong Zhang   nsend        = 0;
1312912837bbSHong Zhang   for (proc = 0; proc < size; proc++) {
1313912837bbSHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1314912837bbSHong Zhang     if (len_s[proc]) {
1315912837bbSHong Zhang       nsend++;
1316912837bbSHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1); /* length of buf_si to be sent to [proc] */
1317912837bbSHong Zhang       len += len_si[proc];
1318912837bbSHong Zhang     }
1319912837bbSHong Zhang   }
1320912837bbSHong Zhang 
1321912837bbSHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
13229566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &nrecv));
13239566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, nsend, nrecv, len_s, len_si, &id_r, &len_r, &len_ri));
1324912837bbSHong Zhang 
1325912837bbSHong Zhang   /* post the Irecv and Isend of coj */
13269566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
13279566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, nrecv, id_r, len_r, &buf_rj, &rwaits));
13289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsend + 1, &swaits));
1329912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1330912837bbSHong Zhang     if (!len_s[proc]) continue;
1331912837bbSHong Zhang     i = owners_co[proc];
13329566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1333912837bbSHong Zhang     k++;
1334912837bbSHong Zhang   }
1335912837bbSHong Zhang 
13367f3e1f30SHong Zhang   /* (2-2) compute symbolic C_loc = Rd*A_loc */
13379566063dSJacob Faibussowitsch   PetscCall(MatSetOptionsPrefix(ptap->Rd, prefix));
13389566063dSJacob Faibussowitsch   PetscCall(MatAppendOptionsPrefix(ptap->Rd, "inner_diag_"));
13399566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &ptap->C_loc));
13409566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(ptap->Rd, ptap->A_loc, fill, ptap->C_loc));
1341912837bbSHong Zhang   c_loc = (Mat_SeqAIJ *)ptap->C_loc->data;
1342912837bbSHong Zhang 
1343912837bbSHong Zhang   /* receives coj are complete */
134448a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13459566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13469566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1347912837bbSHong Zhang 
1348912837bbSHong Zhang   /* add received column indices into ta to update Crmax */
1349*f4f49eeaSPierre Jolivet   a_loc = (Mat_SeqAIJ *)ptap->A_loc->data;
1350669e9c86SHong Zhang 
1351669e9c86SHong Zhang   /* create and initialize a linked list */
1352eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(an, &ta)); /* for compute Crmax */
13534ede91e3SHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, ptap->A_loc->rmap->N, ta);
1354669e9c86SHong Zhang 
1355912837bbSHong Zhang   for (k = 0; k < nrecv; k++) { /* k-th received message */
1356912837bbSHong Zhang     Jptr = buf_rj[k];
1357c76ffc5fSJacob Faibussowitsch     for (j = 0; j < len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
1358912837bbSHong Zhang   }
1359eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
1360eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
1361912837bbSHong Zhang 
1362912837bbSHong Zhang   /* (4) send and recv coi */
13639566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
13649566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, nrecv, id_r, len_ri, &buf_ri, &rwaits));
13659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
1366912837bbSHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1367912837bbSHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1368912837bbSHong Zhang     if (!len_s[proc]) continue;
1369912837bbSHong Zhang     /* form outgoing message for i-structure:
1370912837bbSHong Zhang          buf_si[0]:                 nrows to be sent
1371912837bbSHong Zhang                [1:nrows]:           row index (global)
1372912837bbSHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1373912837bbSHong Zhang     */
1374912837bbSHong Zhang     nrows       = len_si[proc] / 2 - 1; /* num of rows in Co to be sent to [proc] */
1375912837bbSHong Zhang     buf_si_i    = buf_si + nrows + 1;
1376912837bbSHong Zhang     buf_si[0]   = nrows;
1377912837bbSHong Zhang     buf_si_i[0] = 0;
1378912837bbSHong Zhang     nrows       = 0;
1379912837bbSHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1380912837bbSHong Zhang       nzi                 = coi[i + 1] - coi[i];
1381912837bbSHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1382912837bbSHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1383912837bbSHong Zhang       nrows++;
1384912837bbSHong Zhang     }
13859566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1386912837bbSHong Zhang     k++;
1387912837bbSHong Zhang     buf_si += len_si[proc];
1388912837bbSHong Zhang   }
138948a46eb9SPierre Jolivet   for (i = 0; i < nrecv; i++) PetscCallMPI(MPI_Waitany(nrecv, rwaits, &icompleted, &rstatus));
13909566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
13919566063dSJacob Faibussowitsch   if (nsend) PetscCallMPI(MPI_Waitall(nsend, swaits, sstatus));
1392912837bbSHong Zhang 
13939566063dSJacob Faibussowitsch   PetscCall(PetscFree4(len_s, len_si, sstatus, owners_co));
13949566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
13959566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
13969566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1397912837bbSHong Zhang 
13984222ddf1SHong Zhang   /* (5) compute the local portion of C      */
1399bbea24aaSStefano Zampini   /* set initial free space to be Crmax, sufficient for holding nonzeros in each row of C */
14009566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(Crmax, &free_space));
1401912837bbSHong Zhang   current_space = free_space;
1402912837bbSHong Zhang 
14039566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nrecv, &buf_ri_k, nrecv, &nextrow, nrecv, &nextci));
1404912837bbSHong Zhang   for (k = 0; k < nrecv; k++) {
1405912837bbSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1406912837bbSHong Zhang     nrows       = *buf_ri_k[k];
1407912837bbSHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1408a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1409912837bbSHong Zhang   }
1410912837bbSHong Zhang 
1411d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, an, dnz, onz);
14129566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, aN, &lnk, &lnkbt));
14138c78258cSHong Zhang   for (i = 0; i < pn; i++) { /* for each local row of C */
14144222ddf1SHong Zhang     /* add C_loc into C */
1415912837bbSHong Zhang     nzi  = c_loc->i[i + 1] - c_loc->i[i];
1416912837bbSHong Zhang     Jptr = c_loc->j + c_loc->i[i];
14179566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
1418912837bbSHong Zhang 
1419912837bbSHong Zhang     /* add received col data into lnk */
1420912837bbSHong Zhang     for (k = 0; k < nrecv; k++) { /* k-th received message */
1421912837bbSHong Zhang       if (i == *nextrow[k]) {     /* i-th row */
1422912837bbSHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1423912837bbSHong Zhang         Jptr = buf_rj[k] + *nextci[k];
14249566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted(nzi, Jptr, lnk, lnkbt));
14259371c9d4SSatish Balay         nextrow[k]++;
14269371c9d4SSatish Balay         nextci[k]++;
1427912837bbSHong Zhang       }
1428912837bbSHong Zhang     }
14298c78258cSHong Zhang 
14308c78258cSHong Zhang     /* add missing diagonal entry */
14318c78258cSHong Zhang     if (C->force_diagonals) {
14328c78258cSHong Zhang       k = i + owners[rank]; /* column index */
14339566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1, &k, lnk, lnkbt));
14348c78258cSHong Zhang     }
14358c78258cSHong Zhang 
1436912837bbSHong Zhang     nzi = lnk[0];
1437912837bbSHong Zhang 
1438912837bbSHong Zhang     /* copy data into free space, then initialize lnk */
14399566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(aN, nzi, current_space->array, lnk, lnkbt));
14409566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nzi, current_space->array, dnz, onz));
1441912837bbSHong Zhang   }
14429566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
14439566063dSJacob Faibussowitsch   PetscCall(PetscLLDestroy(lnk, lnkbt));
14449566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceDestroy(free_space));
1445912837bbSHong Zhang 
1446912837bbSHong Zhang   /* local sizes and preallocation */
14479566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, an, PETSC_DETERMINE, PETSC_DETERMINE));
14489566063dSJacob Faibussowitsch   if (P->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, P->cmap->bs));
14499566063dSJacob Faibussowitsch   if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, A->cmap->bs));
14509566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
1451d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
1452912837bbSHong Zhang 
145369be949aSStefano Zampini   /* add C_loc and C_oth to C */
14549566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, NULL));
145569be949aSStefano Zampini   for (i = 0; i < pn; i++) {
14568c78258cSHong Zhang     ncols = c_loc->i[i + 1] - c_loc->i[i];
14578c78258cSHong Zhang     cols  = c_loc->j + c_loc->i[i];
14588c78258cSHong Zhang     row   = rstart + i;
14599566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
14608c78258cSHong Zhang 
146148a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, 1, (const PetscInt *)&row, NULL, INSERT_VALUES));
146269be949aSStefano Zampini   }
146369be949aSStefano Zampini   for (i = 0; i < con; i++) {
14648c78258cSHong Zhang     ncols = c_oth->i[i + 1] - c_oth->i[i];
14658c78258cSHong Zhang     cols  = c_oth->j + c_oth->i[i];
14668c78258cSHong Zhang     row   = prmap[i];
14679566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, (const PetscInt *)&row, ncols, (const PetscInt *)cols, NULL, INSERT_VALUES));
146869be949aSStefano Zampini   }
14699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14719566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
147269be949aSStefano Zampini 
1473912837bbSHong Zhang   /* members in merge */
14749566063dSJacob Faibussowitsch   PetscCall(PetscFree(id_r));
14759566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_r));
14769566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri[0]));
14779566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_ri));
14789566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj[0]));
14799566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_rj));
14809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&rowmap));
1481912837bbSHong Zhang 
14824222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
14836718818eSStefano Zampini   C->product->data    = ptap;
14846718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
14853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1486912837bbSHong Zhang }
1487912837bbSHong Zhang 
1488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_nonscalable(Mat P, Mat A, Mat C)
1489d71ae5a4SJacob Faibussowitsch {
14906718818eSStefano Zampini   Mat_MPIAIJ        *p = (Mat_MPIAIJ *)P->data;
1491669e9c86SHong Zhang   Mat_SeqAIJ        *c_seq;
14926718818eSStefano Zampini   Mat_APMPI         *ptap;
1493669e9c86SHong Zhang   Mat                A_loc, C_loc, C_oth;
1494912837bbSHong Zhang   PetscInt           i, rstart, rend, cm, ncols, row;
1495912837bbSHong Zhang   const PetscInt    *cols;
1496912837bbSHong Zhang   const PetscScalar *vals;
1497912837bbSHong Zhang 
1498912837bbSHong Zhang   PetscFunctionBegin;
14996718818eSStefano Zampini   MatCheckProduct(C, 3);
15006718818eSStefano Zampini   ptap = (Mat_APMPI *)C->product->data;
150128b400f6SJacob Faibussowitsch   PetscCheck(ptap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtAP cannot be computed. Missing data");
150228b400f6SJacob Faibussowitsch   PetscCheck(ptap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15039566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(C));
1504912837bbSHong Zhang 
1505669e9c86SHong Zhang   /* These matrices are obtained in MatTransposeMatMultSymbolic() */
1506669e9c86SHong Zhang   /* 1) get R = Pd^T, Ro = Po^T */
15071cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->A, ptap->Rd));
1508acd337a6SBarry Smith   PetscCall(MatTranspose(p->A, MAT_REUSE_MATRIX, &ptap->Rd));
15091cdffd5eSHong Zhang   PetscCall(MatTransposeSetPrecursor(p->B, ptap->Ro));
1510acd337a6SBarry Smith   PetscCall(MatTranspose(p->B, MAT_REUSE_MATRIX, &ptap->Ro));
1511669e9c86SHong Zhang 
1512669e9c86SHong Zhang   /* 2) compute numeric A_loc */
15139566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &ptap->A_loc));
1514912837bbSHong Zhang 
1515669e9c86SHong Zhang   /* 3) C_loc = Rd*A_loc, C_oth = Ro*A_loc */
15164ede91e3SHong Zhang   A_loc = ptap->A_loc;
1517*f4f49eeaSPierre Jolivet   PetscCall(ptap->C_loc->ops->matmultnumeric(ptap->Rd, A_loc, ptap->C_loc));
1518*f4f49eeaSPierre Jolivet   PetscCall(ptap->C_oth->ops->matmultnumeric(ptap->Ro, A_loc, ptap->C_oth));
1519912837bbSHong Zhang   C_loc = ptap->C_loc;
1520912837bbSHong Zhang   C_oth = ptap->C_oth;
1521912837bbSHong Zhang 
152269be949aSStefano Zampini   /* add C_loc and C_oth to C */
15239566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(C, &rstart, &rend));
1524912837bbSHong Zhang 
1525912837bbSHong Zhang   /* C_loc -> C */
1526912837bbSHong Zhang   cm    = C_loc->rmap->N;
1527912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_loc->data;
1528912837bbSHong Zhang   cols  = c_seq->j;
1529912837bbSHong Zhang   vals  = c_seq->a;
1530912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1531912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1532912837bbSHong Zhang     row   = rstart + i;
15339566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15349371c9d4SSatish Balay     cols += ncols;
15359371c9d4SSatish Balay     vals += ncols;
1536912837bbSHong Zhang   }
1537912837bbSHong Zhang 
1538912837bbSHong Zhang   /* Co -> C, off-processor part */
1539912837bbSHong Zhang   cm    = C_oth->rmap->N;
1540912837bbSHong Zhang   c_seq = (Mat_SeqAIJ *)C_oth->data;
1541912837bbSHong Zhang   cols  = c_seq->j;
1542912837bbSHong Zhang   vals  = c_seq->a;
1543912837bbSHong Zhang   for (i = 0; i < cm; i++) {
1544912837bbSHong Zhang     ncols = c_seq->i[i + 1] - c_seq->i[i];
1545912837bbSHong Zhang     row   = p->garray[i];
15469566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, ncols, cols, vals, ADD_VALUES));
15479371c9d4SSatish Balay     cols += ncols;
15489371c9d4SSatish Balay     vals += ncols;
1549912837bbSHong Zhang   }
15509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
15519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
15529566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
15533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1554912837bbSHong Zhang }
1555912837bbSHong Zhang 
1556d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ(Mat P, Mat A, Mat C)
1557d71ae5a4SJacob Faibussowitsch {
1558d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
15596718818eSStefano Zampini   Mat_MPIAIJ          *p  = (Mat_MPIAIJ *)P->data;
1560*f4f49eeaSPierre Jolivet   Mat_SeqAIJ          *pd = (Mat_SeqAIJ *)p->A->data, *po = (Mat_SeqAIJ *)p->B->data;
15611cdffd5eSHong Zhang   Mat_APMPI           *ap;
1562e745005bSHong Zhang   PetscInt            *adj;
1563e745005bSHong Zhang   PetscInt             i, j, k, anz, pnz, row, *cj, nexta;
1564e745005bSHong Zhang   MatScalar           *ada, *ca, valtmp;
1565d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, cm = C->rmap->n, pon = (p->B)->cmap->n;
1566ce94432eSBarry Smith   MPI_Comm             comm;
1567d6ab1dc0SHong Zhang   PetscMPIInt          size, rank, taga, *len_s;
1568d6ab1dc0SHong Zhang   PetscInt            *owners, proc, nrows, **buf_ri_k, **nextrow, **nextci;
1569d6ab1dc0SHong Zhang   PetscInt           **buf_ri, **buf_rj;
1570d6ab1dc0SHong Zhang   PetscInt             cnz = 0, *bj_i, *bi, *bj, bnz, nextcj; /* bi,bj,ba: local array of C(mpi mat) */
1571d6ab1dc0SHong Zhang   MPI_Request         *s_waits, *r_waits;
1572d6ab1dc0SHong Zhang   MPI_Status          *status;
1573d6ab1dc0SHong Zhang   MatScalar          **abuf_r, *ba_i, *pA, *coa, *ba;
1574ce496241SStefano Zampini   const PetscScalar   *dummy;
15754e201bd7SHong Zhang   PetscInt            *ai, *aj, *coi, *coj, *poJ, *pdJ;
1576d6ab1dc0SHong Zhang   Mat                  A_loc;
1577d6ab1dc0SHong Zhang   Mat_SeqAIJ          *a_loc;
1578d6ab1dc0SHong Zhang 
1579d6ab1dc0SHong Zhang   PetscFunctionBegin;
15806718818eSStefano Zampini   MatCheckProduct(C, 3);
15811cdffd5eSHong Zhang   ap = (Mat_APMPI *)C->product->data;
15821cdffd5eSHong Zhang   PetscCheck(ap, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be computed. Missing data");
15831cdffd5eSHong Zhang   PetscCheck(ap->A_loc, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "PtA cannot be reused. Do not call MatProductClear()");
15849566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
15859566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
15869566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1587d6ab1dc0SHong Zhang 
15881cdffd5eSHong Zhang   merge = ap->merge;
1589d6ab1dc0SHong Zhang 
1590e745005bSHong Zhang   /* 2) compute numeric C_seq = P_loc^T*A_loc */
1591d6ab1dc0SHong Zhang   /* get data from symbolic products */
15929371c9d4SSatish Balay   coi = merge->coi;
15939371c9d4SSatish Balay   coj = merge->coj;
15949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(coi[pon] + 1, &coa));
15959371c9d4SSatish Balay   bi     = merge->bi;
15969371c9d4SSatish Balay   bj     = merge->bj;
1597d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
15989566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bi[cm] + 1, &ba));
1599d6ab1dc0SHong Zhang 
1600d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
16011cdffd5eSHong Zhang   A_loc = ap->A_loc;
16029566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_REUSE_MATRIX, &A_loc));
1603d6ab1dc0SHong Zhang   a_loc = (Mat_SeqAIJ *)(A_loc)->data;
1604d6ab1dc0SHong Zhang   ai    = a_loc->i;
1605d6ab1dc0SHong Zhang   aj    = a_loc->j;
1606d6ab1dc0SHong Zhang 
1607ce496241SStefano Zampini   /* trigger copy to CPU */
16089566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->A, &dummy));
16099566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->A, &dummy));
16109566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(p->B, &dummy));
16119566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(p->B, &dummy));
1612d6ab1dc0SHong Zhang   for (i = 0; i < am; i++) {
1613d6ab1dc0SHong Zhang     anz = ai[i + 1] - ai[i];
1614d6ab1dc0SHong Zhang     adj = aj + ai[i];
1615d6ab1dc0SHong Zhang     ada = a_loc->a + ai[i];
1616d6ab1dc0SHong Zhang 
1617d6ab1dc0SHong Zhang     /* 2-b) Compute Cseq = P_loc[i,:]^T*A[i,:] using outer product */
1618d6ab1dc0SHong Zhang     /* put the value into Co=(p->B)^T*A (off-diagonal part, send to others) */
1619d6ab1dc0SHong Zhang     pnz = po->i[i + 1] - po->i[i];
1620d6ab1dc0SHong Zhang     poJ = po->j + po->i[i];
1621d6ab1dc0SHong Zhang     pA  = po->a + po->i[i];
1622d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1623d6ab1dc0SHong Zhang       row = poJ[j];
1624d6ab1dc0SHong Zhang       cj  = coj + coi[row];
1625d6ab1dc0SHong Zhang       ca  = coa + coi[row];
1626e745005bSHong Zhang       /* perform sparse axpy */
1627e745005bSHong Zhang       nexta  = 0;
1628d6ab1dc0SHong Zhang       valtmp = pA[j];
1629e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1630e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1631e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1632e745005bSHong Zhang           nexta++;
1633d6ab1dc0SHong Zhang         }
1634e745005bSHong Zhang       }
16359566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1636d6ab1dc0SHong Zhang     }
1637d6ab1dc0SHong Zhang 
1638d6ab1dc0SHong Zhang     /* put the value into Cd (diagonal part) */
1639d6ab1dc0SHong Zhang     pnz = pd->i[i + 1] - pd->i[i];
1640d6ab1dc0SHong Zhang     pdJ = pd->j + pd->i[i];
1641d6ab1dc0SHong Zhang     pA  = pd->a + pd->i[i];
1642d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1643d6ab1dc0SHong Zhang       row = pdJ[j];
1644d6ab1dc0SHong Zhang       cj  = bj + bi[row];
1645d6ab1dc0SHong Zhang       ca  = ba + bi[row];
1646e745005bSHong Zhang       /* perform sparse axpy */
1647e745005bSHong Zhang       nexta  = 0;
1648d6ab1dc0SHong Zhang       valtmp = pA[j];
1649e745005bSHong Zhang       for (k = 0; nexta < anz; k++) {
1650e745005bSHong Zhang         if (cj[k] == adj[nexta]) {
1651e745005bSHong Zhang           ca[k] += valtmp * ada[nexta];
1652e745005bSHong Zhang           nexta++;
1653d6ab1dc0SHong Zhang         }
1654e745005bSHong Zhang       }
16559566063dSJacob Faibussowitsch       PetscCall(PetscLogFlops(2.0 * anz));
1656d6ab1dc0SHong Zhang     }
1657d6ab1dc0SHong Zhang   }
1658d6ab1dc0SHong Zhang 
1659d6ab1dc0SHong Zhang   /* 3) send and recv matrix values coa */
1660d6ab1dc0SHong Zhang   buf_ri = merge->buf_ri;
1661d6ab1dc0SHong Zhang   buf_rj = merge->buf_rj;
1662d6ab1dc0SHong Zhang   len_s  = merge->len_s;
16639566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &taga));
16649566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvScalar(comm, taga, merge->nrecv, merge->id_r, merge->len_r, &abuf_r, &r_waits));
1665d6ab1dc0SHong Zhang 
16669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(merge->nsend + 1, &s_waits, size, &status));
1667d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1668d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1669d6ab1dc0SHong Zhang     i = merge->owners_co[proc];
16709566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coa + coi[i], len_s[proc], MPIU_MATSCALAR, proc, taga, comm, s_waits + k));
1671d6ab1dc0SHong Zhang     k++;
1672d6ab1dc0SHong Zhang   }
16739566063dSJacob Faibussowitsch   if (merge->nrecv) PetscCallMPI(MPI_Waitall(merge->nrecv, r_waits, status));
16749566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, s_waits, status));
1675d6ab1dc0SHong Zhang 
16769566063dSJacob Faibussowitsch   PetscCall(PetscFree2(s_waits, status));
16779566063dSJacob Faibussowitsch   PetscCall(PetscFree(r_waits));
16789566063dSJacob Faibussowitsch   PetscCall(PetscFree(coa));
1679d6ab1dc0SHong Zhang 
1680d6ab1dc0SHong Zhang   /* 4) insert local Cseq and received values into Cmpi */
16819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1682d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1683e745005bSHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1684*f4f49eeaSPierre Jolivet     nrows       = *buf_ri_k[k];
1685d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
1686a5b23f4aSJose E. Roman     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th recved i-structure  */
1687d6ab1dc0SHong Zhang   }
1688d6ab1dc0SHong Zhang 
1689d6ab1dc0SHong Zhang   for (i = 0; i < cm; i++) {
1690d6ab1dc0SHong Zhang     row  = owners[rank] + i; /* global row index of C_seq */
1691d6ab1dc0SHong Zhang     bj_i = bj + bi[i];       /* col indices of the i-th row of C */
1692d6ab1dc0SHong Zhang     ba_i = ba + bi[i];
1693d6ab1dc0SHong Zhang     bnz  = bi[i + 1] - bi[i];
1694d6ab1dc0SHong Zhang     /* add received vals into ba */
1695d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1696d6ab1dc0SHong Zhang       /* i-th row */
1697d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {
1698d6ab1dc0SHong Zhang         cnz    = *(nextci[k] + 1) - *nextci[k];
1699*f4f49eeaSPierre Jolivet         cj     = buf_rj[k] + *nextci[k];
1700*f4f49eeaSPierre Jolivet         ca     = abuf_r[k] + *nextci[k];
1701d6ab1dc0SHong Zhang         nextcj = 0;
1702d6ab1dc0SHong Zhang         for (j = 0; nextcj < cnz; j++) {
1703d6ab1dc0SHong Zhang           if (bj_i[j] == cj[nextcj]) { /* bcol == ccol */
1704d6ab1dc0SHong Zhang             ba_i[j] += ca[nextcj++];
1705d6ab1dc0SHong Zhang           }
1706d6ab1dc0SHong Zhang         }
17079371c9d4SSatish Balay         nextrow[k]++;
17089371c9d4SSatish Balay         nextci[k]++;
17099566063dSJacob Faibussowitsch         PetscCall(PetscLogFlops(2.0 * cnz));
1710d6ab1dc0SHong Zhang       }
1711d6ab1dc0SHong Zhang     }
17129566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, bnz, bj_i, ba_i, INSERT_VALUES));
1713d6ab1dc0SHong Zhang   }
17149566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
17159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
1716d6ab1dc0SHong Zhang 
17179566063dSJacob Faibussowitsch   PetscCall(PetscFree(ba));
17189566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r[0]));
17199566063dSJacob Faibussowitsch   PetscCall(PetscFree(abuf_r));
17209566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
17213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1722d6ab1dc0SHong Zhang }
1723d6ab1dc0SHong Zhang 
1724d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(Mat P, Mat A, PetscReal fill, Mat C)
1725d71ae5a4SJacob Faibussowitsch {
1726b419842dSStefano Zampini   Mat                  A_loc;
17271cdffd5eSHong Zhang   Mat_APMPI           *ap;
17280298fd71SBarry Smith   PetscFreeSpaceList   free_space = NULL, current_space = NULL;
17296718818eSStefano Zampini   Mat_MPIAIJ          *p = (Mat_MPIAIJ *)P->data, *a = (Mat_MPIAIJ *)A->data;
1730d6ab1dc0SHong Zhang   PetscInt            *pdti, *pdtj, *poti, *potj, *ptJ;
1731d6ab1dc0SHong Zhang   PetscInt             nnz;
1732d6ab1dc0SHong Zhang   PetscInt            *lnk, *owners_co, *coi, *coj, i, k, pnz, row;
1733d6ab1dc0SHong Zhang   PetscInt             am = A->rmap->n, pn = P->cmap->n;
1734ce94432eSBarry Smith   MPI_Comm             comm;
1735d6ab1dc0SHong Zhang   PetscMPIInt          size, rank, tagi, tagj, *len_si, *len_s, *len_ri;
1736d6ab1dc0SHong Zhang   PetscInt           **buf_rj, **buf_ri, **buf_ri_k;
1737d6ab1dc0SHong Zhang   PetscInt             len, proc, *dnz, *onz, *owners;
1738d6ab1dc0SHong Zhang   PetscInt             nzi, *bi, *bj;
1739d6ab1dc0SHong Zhang   PetscInt             nrows, *buf_s, *buf_si, *buf_si_i, **nextrow, **nextci;
1740d6ab1dc0SHong Zhang   MPI_Request         *swaits, *rwaits;
1741d6ab1dc0SHong Zhang   MPI_Status          *sstatus, rstatus;
1742d6ab1dc0SHong Zhang   Mat_Merge_SeqsToMPI *merge;
1743d6ab1dc0SHong Zhang   PetscInt            *ai, *aj, *Jptr, anz, *prmap = p->garray, pon, nspacedouble = 0, j;
1744d6ab1dc0SHong Zhang   PetscReal            afill  = 1.0, afill_tmp;
1745eec179cfSJacob Faibussowitsch   PetscInt             rstart = P->cmap->rstart, rmax, Armax;
1746b419842dSStefano Zampini   Mat_SeqAIJ          *a_loc;
1747eec179cfSJacob Faibussowitsch   PetscHMapI           ta;
1748b92f168fSBarry Smith   MatType              mtype;
1749d6ab1dc0SHong Zhang 
1750d6ab1dc0SHong Zhang   PetscFunctionBegin;
17519566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
1752d6ab1dc0SHong Zhang   /* check if matrix local sizes are compatible */
17539371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, comm, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != P (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->rstart,
17549371c9d4SSatish Balay              A->rmap->rend, P->rmap->rstart, P->rmap->rend);
1755d6ab1dc0SHong Zhang 
17569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
17579566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
1758d6ab1dc0SHong Zhang 
17593cdca5ebSHong Zhang   /* create struct Mat_APMPI and attached it to C later */
17601cdffd5eSHong Zhang   PetscCall(PetscNew(&ap));
1761d6ab1dc0SHong Zhang 
1762d6ab1dc0SHong Zhang   /* get A_loc by taking all local rows of A */
17639566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJGetLocalMat(A, MAT_INITIAL_MATRIX, &A_loc));
17642205254eSKarl Rupp 
17651cdffd5eSHong Zhang   ap->A_loc = A_loc;
1766d6ab1dc0SHong Zhang   a_loc     = (Mat_SeqAIJ *)(A_loc)->data;
1767d6ab1dc0SHong Zhang   ai        = a_loc->i;
1768d6ab1dc0SHong Zhang   aj        = a_loc->j;
1769d6ab1dc0SHong Zhang 
1770d6ab1dc0SHong Zhang   /* determine symbolic Co=(p->B)^T*A - send to others */
17719566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
17729566063dSJacob Faibussowitsch   PetscCall(MatGetSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
1773d6ab1dc0SHong Zhang   pon = (p->B)->cmap->n; /* total num of rows to be sent to other processors
1774d6ab1dc0SHong Zhang                          >= (num of nonzero rows of C_seq) - pn */
17759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pon + 1, &coi));
1776d6ab1dc0SHong Zhang   coi[0] = 0;
1777d6ab1dc0SHong Zhang 
1778d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(p->B) + nnz(A)) */
1779f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(poti[pon], ai[am]));
17809566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1781d6ab1dc0SHong Zhang   current_space = free_space;
178219f0e57aSHong Zhang 
1783d6ab1dc0SHong Zhang   /* create and initialize a linked list */
1784eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(A->cmap->n + a->B->cmap->N, &ta));
17854b38b95cSHong Zhang   MatRowMergeMax_SeqAIJ(a_loc, am, ta);
1786eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
178733ba5e2fSHong Zhang 
17889566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1789d6ab1dc0SHong Zhang 
1790d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1791d6ab1dc0SHong Zhang     pnz = poti[i + 1] - poti[i];
1792d6ab1dc0SHong Zhang     ptJ = potj + poti[i];
1793d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1794d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of A_loc == col of Pot */
1795d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1796d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1797d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
17989566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1799d6ab1dc0SHong Zhang     }
1800d6ab1dc0SHong Zhang     nnz = lnk[0];
1801d6ab1dc0SHong Zhang 
1802d6ab1dc0SHong Zhang     /* If free space is not available, double the total space in the list */
1803d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
18049566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1805d6ab1dc0SHong Zhang       nspacedouble++;
1806d6ab1dc0SHong Zhang     }
1807d6ab1dc0SHong Zhang 
1808d6ab1dc0SHong Zhang     /* Copy data into free space, and zero out denserows */
18099566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
18102205254eSKarl Rupp 
1811d6ab1dc0SHong Zhang     current_space->array += nnz;
1812d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1813d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
18142205254eSKarl Rupp 
1815d6ab1dc0SHong Zhang     coi[i + 1] = coi[i] + nnz;
1816d6ab1dc0SHong Zhang   }
1817d6ab1dc0SHong Zhang 
18189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(coi[pon] + 1, &coj));
18199566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, coj));
18209566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); /* must destroy to get a new one for C */
18212205254eSKarl Rupp 
1822118727c9SMark F. Adams   afill_tmp = (PetscReal)coi[pon] / (poti[pon] + ai[am] + 1);
1823d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
1824d6ab1dc0SHong Zhang 
1825d6ab1dc0SHong Zhang   /* send j-array (coj) of Co to other processors */
1826d6ab1dc0SHong Zhang   /* determine row ownership */
18279566063dSJacob Faibussowitsch   PetscCall(PetscNew(&merge));
18289566063dSJacob Faibussowitsch   PetscCall(PetscLayoutCreate(comm, &merge->rowmap));
18292205254eSKarl Rupp 
1830d6ab1dc0SHong Zhang   merge->rowmap->n  = pn;
1831d6ab1dc0SHong Zhang   merge->rowmap->bs = 1;
18322205254eSKarl Rupp 
18339566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(merge->rowmap));
1834d6ab1dc0SHong Zhang   owners = merge->rowmap->range;
1835d6ab1dc0SHong Zhang 
1836d6ab1dc0SHong Zhang   /* determine the number of messages to send, their lengths */
18379566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &len_si));
18389566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(size, &merge->len_s));
18392205254eSKarl Rupp 
1840d6ab1dc0SHong Zhang   len_s        = merge->len_s;
1841d6ab1dc0SHong Zhang   merge->nsend = 0;
1842d6ab1dc0SHong Zhang 
18439566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size + 2, &owners_co));
1844d6ab1dc0SHong Zhang 
1845d6ab1dc0SHong Zhang   proc = 0;
1846d6ab1dc0SHong Zhang   for (i = 0; i < pon; i++) {
1847d6ab1dc0SHong Zhang     while (prmap[i] >= owners[proc + 1]) proc++;
1848d6ab1dc0SHong Zhang     len_si[proc]++; /* num of rows in Co to be sent to [proc] */
1849d6ab1dc0SHong Zhang     len_s[proc] += coi[i + 1] - coi[i];
1850d6ab1dc0SHong Zhang   }
1851d6ab1dc0SHong Zhang 
1852d6ab1dc0SHong Zhang   len          = 0; /* max length of buf_si[] */
1853d6ab1dc0SHong Zhang   owners_co[0] = 0;
1854d6ab1dc0SHong Zhang   for (proc = 0; proc < size; proc++) {
1855d6ab1dc0SHong Zhang     owners_co[proc + 1] = owners_co[proc] + len_si[proc];
1856d6ab1dc0SHong Zhang     if (len_si[proc]) {
1857d6ab1dc0SHong Zhang       merge->nsend++;
1858d6ab1dc0SHong Zhang       len_si[proc] = 2 * (len_si[proc] + 1);
1859d6ab1dc0SHong Zhang       len += len_si[proc];
1860d6ab1dc0SHong Zhang     }
1861d6ab1dc0SHong Zhang   }
1862d6ab1dc0SHong Zhang 
1863d6ab1dc0SHong Zhang   /* determine the number and length of messages to receive for coi and coj  */
18649566063dSJacob Faibussowitsch   PetscCall(PetscGatherNumberOfMessages(comm, NULL, len_s, &merge->nrecv));
18659566063dSJacob Faibussowitsch   PetscCall(PetscGatherMessageLengths2(comm, merge->nsend, merge->nrecv, len_s, len_si, &merge->id_r, &merge->len_r, &len_ri));
1866d6ab1dc0SHong Zhang 
1867d6ab1dc0SHong Zhang   /* post the Irecv and Isend of coj */
18689566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagj));
18699566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagj, merge->nrecv, merge->id_r, merge->len_r, &buf_rj, &rwaits));
18709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(merge->nsend + 1, &swaits));
1871d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1872d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1873d6ab1dc0SHong Zhang     i = owners_co[proc];
18749566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(coj + coi[i], len_s[proc], MPIU_INT, proc, tagj, comm, swaits + k));
1875d6ab1dc0SHong Zhang     k++;
1876d6ab1dc0SHong Zhang   }
1877d6ab1dc0SHong Zhang 
1878d6ab1dc0SHong Zhang   /* receives and sends of coj are complete */
18799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(size, &sstatus));
1880d6ab1dc0SHong Zhang   for (i = 0; i < merge->nrecv; i++) {
1881ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
18829566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1883d6ab1dc0SHong Zhang   }
18849566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
18859566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
1886d6ab1dc0SHong Zhang 
18870acc65b4SHong Zhang   /* add received column indices into table to update Armax */
1888c4762a1bSJed Brown   /* Armax can be as large as aN if a P[row,:] is dense, see src/ksp/ksp/tutorials/ex56.c! */
18890acc65b4SHong Zhang   for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
18900acc65b4SHong Zhang     Jptr = buf_rj[k];
1891c76ffc5fSJacob Faibussowitsch     for (j = 0; j < merge->len_r[k]; j++) PetscCall(PetscHMapISet(ta, *(Jptr + j) + 1, 1));
18920acc65b4SHong Zhang   }
1893eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Armax));
18940acc65b4SHong Zhang 
1895d6ab1dc0SHong Zhang   /* send and recv coi */
18969566063dSJacob Faibussowitsch   PetscCall(PetscCommGetNewTag(comm, &tagi));
18979566063dSJacob Faibussowitsch   PetscCall(PetscPostIrecvInt(comm, tagi, merge->nrecv, merge->id_r, len_ri, &buf_ri, &rwaits));
18989566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(len + 1, &buf_s));
1899d6ab1dc0SHong Zhang   buf_si = buf_s; /* points to the beginning of k-th msg to be sent */
1900d6ab1dc0SHong Zhang   for (proc = 0, k = 0; proc < size; proc++) {
1901d6ab1dc0SHong Zhang     if (!len_s[proc]) continue;
1902d6ab1dc0SHong Zhang     /* form outgoing message for i-structure:
1903d6ab1dc0SHong Zhang          buf_si[0]:                 nrows to be sent
1904d6ab1dc0SHong Zhang                [1:nrows]:           row index (global)
1905d6ab1dc0SHong Zhang                [nrows+1:2*nrows+1]: i-structure index
1906d6ab1dc0SHong Zhang     */
1907d6ab1dc0SHong Zhang     nrows       = len_si[proc] / 2 - 1;
1908d6ab1dc0SHong Zhang     buf_si_i    = buf_si + nrows + 1;
1909d6ab1dc0SHong Zhang     buf_si[0]   = nrows;
1910d6ab1dc0SHong Zhang     buf_si_i[0] = 0;
1911d6ab1dc0SHong Zhang     nrows       = 0;
1912d6ab1dc0SHong Zhang     for (i = owners_co[proc]; i < owners_co[proc + 1]; i++) {
1913d6ab1dc0SHong Zhang       nzi                 = coi[i + 1] - coi[i];
1914d6ab1dc0SHong Zhang       buf_si_i[nrows + 1] = buf_si_i[nrows] + nzi;   /* i-structure */
1915d6ab1dc0SHong Zhang       buf_si[nrows + 1]   = prmap[i] - owners[proc]; /* local row index */
1916d6ab1dc0SHong Zhang       nrows++;
1917d6ab1dc0SHong Zhang     }
19189566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Isend(buf_si, len_si[proc], MPIU_INT, proc, tagi, comm, swaits + k));
1919d6ab1dc0SHong Zhang     k++;
1920d6ab1dc0SHong Zhang     buf_si += len_si[proc];
1921d6ab1dc0SHong Zhang   }
1922d6ab1dc0SHong Zhang   i = merge->nrecv;
1923d6ab1dc0SHong Zhang   while (i--) {
1924ec4bef21SJose E. Roman     PETSC_UNUSED PetscMPIInt icompleted;
19259566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Waitany(merge->nrecv, rwaits, &icompleted, &rstatus));
1926d6ab1dc0SHong Zhang   }
19279566063dSJacob Faibussowitsch   PetscCall(PetscFree(rwaits));
19289566063dSJacob Faibussowitsch   if (merge->nsend) PetscCallMPI(MPI_Waitall(merge->nsend, swaits, sstatus));
19299566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_si));
19309566063dSJacob Faibussowitsch   PetscCall(PetscFree(len_ri));
19319566063dSJacob Faibussowitsch   PetscCall(PetscFree(swaits));
19329566063dSJacob Faibussowitsch   PetscCall(PetscFree(sstatus));
19339566063dSJacob Faibussowitsch   PetscCall(PetscFree(buf_s));
1934d6ab1dc0SHong Zhang 
1935d6ab1dc0SHong Zhang   /* compute the local portion of C (mpi mat) */
1936d6ab1dc0SHong Zhang   /* allocate bi array and free space for accumulating nonzero column info */
19379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(pn + 1, &bi));
1938d6ab1dc0SHong Zhang   bi[0] = 0;
1939d6ab1dc0SHong Zhang 
1940d6ab1dc0SHong Zhang   /* set initial free space to be fill*(nnz(P) + nnz(AP)) */
1941f91af8c7SBarry Smith   nnz = PetscRealIntMultTruncate(fill, PetscIntSumTruncate(pdti[pn], PetscIntSumTruncate(poti[pon], ai[am])));
19429566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(nnz, &free_space));
1943d6ab1dc0SHong Zhang   current_space = free_space;
1944d6ab1dc0SHong Zhang 
19459566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(merge->nrecv, &buf_ri_k, merge->nrecv, &nextrow, merge->nrecv, &nextci));
1946d6ab1dc0SHong Zhang   for (k = 0; k < merge->nrecv; k++) {
1947d6ab1dc0SHong Zhang     buf_ri_k[k] = buf_ri[k]; /* beginning of k-th recved i-structure */
1948d6ab1dc0SHong Zhang     nrows       = *buf_ri_k[k];
1949d6ab1dc0SHong Zhang     nextrow[k]  = buf_ri_k[k] + 1;           /* next row number of k-th recved i-structure */
19502d4ee042Sprj-     nextci[k]   = buf_ri_k[k] + (nrows + 1); /* points to the next i-structure of k-th received i-structure  */
1951d6ab1dc0SHong Zhang   }
1952d6ab1dc0SHong Zhang 
19539566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Armax, &lnk));
1954d0609cedSBarry Smith   MatPreallocateBegin(comm, pn, A->cmap->n, dnz, onz);
1955d6ab1dc0SHong Zhang   rmax = 0;
1956d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
1957d6ab1dc0SHong Zhang     /* add pdt[i,:]*AP into lnk */
1958d6ab1dc0SHong Zhang     pnz = pdti[i + 1] - pdti[i];
1959d6ab1dc0SHong Zhang     ptJ = pdtj + pdti[i];
1960d6ab1dc0SHong Zhang     for (j = 0; j < pnz; j++) {
1961d6ab1dc0SHong Zhang       row  = ptJ[j]; /* row of AP == col of Pt */
1962d6ab1dc0SHong Zhang       anz  = ai[row + 1] - ai[row];
1963d6ab1dc0SHong Zhang       Jptr = aj + ai[row];
1964d6ab1dc0SHong Zhang       /* add non-zero cols of AP into the sorted linked list lnk */
19659566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(anz, Jptr, lnk));
1966d6ab1dc0SHong Zhang     }
1967d6ab1dc0SHong Zhang 
1968d6ab1dc0SHong Zhang     /* add received col data into lnk */
1969d6ab1dc0SHong Zhang     for (k = 0; k < merge->nrecv; k++) { /* k-th received message */
1970d6ab1dc0SHong Zhang       if (i == *nextrow[k]) {            /* i-th row */
1971d6ab1dc0SHong Zhang         nzi  = *(nextci[k] + 1) - *nextci[k];
1972d6ab1dc0SHong Zhang         Jptr = buf_rj[k] + *nextci[k];
19739566063dSJacob Faibussowitsch         PetscCall(PetscLLCondensedAddSorted_Scalable(nzi, Jptr, lnk));
19749371c9d4SSatish Balay         nextrow[k]++;
19759371c9d4SSatish Balay         nextci[k]++;
1976d6ab1dc0SHong Zhang       }
1977d6ab1dc0SHong Zhang     }
19788c78258cSHong Zhang 
19798c78258cSHong Zhang     /* add missing diagonal entry */
19808c78258cSHong Zhang     if (C->force_diagonals) {
19818c78258cSHong Zhang       k = i + owners[rank]; /* column index */
19829566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1, &k, lnk));
19838c78258cSHong Zhang     }
19848c78258cSHong Zhang 
1985d6ab1dc0SHong Zhang     nnz = lnk[0];
1986d6ab1dc0SHong Zhang 
1987d6ab1dc0SHong Zhang     /* if free space is not available, make more free space */
1988d6ab1dc0SHong Zhang     if (current_space->local_remaining < nnz) {
19899566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(nnz, current_space->total_array_size), &current_space));
1990d6ab1dc0SHong Zhang       nspacedouble++;
1991d6ab1dc0SHong Zhang     }
1992d6ab1dc0SHong Zhang     /* copy data into free space, then initialize lnk */
19939566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(nnz, current_space->array, lnk));
19949566063dSJacob Faibussowitsch     PetscCall(MatPreallocateSet(i + owners[rank], nnz, current_space->array, dnz, onz));
19952205254eSKarl Rupp 
1996d6ab1dc0SHong Zhang     current_space->array += nnz;
1997d6ab1dc0SHong Zhang     current_space->local_used += nnz;
1998d6ab1dc0SHong Zhang     current_space->local_remaining -= nnz;
19992205254eSKarl Rupp 
2000d6ab1dc0SHong Zhang     bi[i + 1] = bi[i] + nnz;
2001d6ab1dc0SHong Zhang     if (nnz > rmax) rmax = nnz;
2002d6ab1dc0SHong Zhang   }
20039566063dSJacob Faibussowitsch   PetscCall(PetscFree3(buf_ri_k, nextrow, nextci));
2004d6ab1dc0SHong Zhang 
20059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bi[pn] + 1, &bj));
20069566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, bj));
2007118727c9SMark F. Adams   afill_tmp = (PetscReal)bi[pn] / (pdti[pn] + poti[pon] + ai[am] + 1);
2008d6ab1dc0SHong Zhang   if (afill_tmp > afill) afill = afill_tmp;
20099566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
2010eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
20119566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->A, &pdti, &pdtj));
20129566063dSJacob Faibussowitsch   PetscCall(MatRestoreSymbolicTranspose_SeqAIJ(p->B, &poti, &potj));
2013d6ab1dc0SHong Zhang 
20144222ddf1SHong Zhang   /* create symbolic parallel matrix C - why cannot be assembled in Numeric part   */
20159566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(C, pn, A->cmap->n, PETSC_DETERMINE, PETSC_DETERMINE));
20169566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(C, PetscAbs(P->cmap->bs), PetscAbs(A->cmap->bs)));
20179566063dSJacob Faibussowitsch   PetscCall(MatGetType(A, &mtype));
20189566063dSJacob Faibussowitsch   PetscCall(MatSetType(C, mtype));
20199566063dSJacob Faibussowitsch   PetscCall(MatMPIAIJSetPreallocation(C, 0, dnz, 0, onz));
2020d0609cedSBarry Smith   MatPreallocateEnd(dnz, onz);
20219566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(C, 1));
20229566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
2023d6ab1dc0SHong Zhang   for (i = 0; i < pn; i++) {
2024d6ab1dc0SHong Zhang     row  = i + rstart;
2025d6ab1dc0SHong Zhang     nnz  = bi[i + 1] - bi[i];
2026d6ab1dc0SHong Zhang     Jptr = bj + bi[i];
20279566063dSJacob Faibussowitsch     PetscCall(MatSetValues(C, 1, &row, nnz, Jptr, NULL, INSERT_VALUES));
2028d6ab1dc0SHong Zhang   }
20299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
20309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
20319566063dSJacob Faibussowitsch   PetscCall(MatSetOption(C, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2032d6ab1dc0SHong Zhang   merge->bi        = bi;
2033d6ab1dc0SHong Zhang   merge->bj        = bj;
2034d6ab1dc0SHong Zhang   merge->coi       = coi;
2035d6ab1dc0SHong Zhang   merge->coj       = coj;
2036d6ab1dc0SHong Zhang   merge->buf_ri    = buf_ri;
2037d6ab1dc0SHong Zhang   merge->buf_rj    = buf_rj;
2038d6ab1dc0SHong Zhang   merge->owners_co = owners_co;
2039d6ab1dc0SHong Zhang 
20404222ddf1SHong Zhang   /* attach the supporting struct to C for reuse */
20411cdffd5eSHong Zhang   C->product->data    = ap;
20426718818eSStefano Zampini   C->product->destroy = MatDestroy_MPIAIJ_PtAP;
20431cdffd5eSHong Zhang   ap->merge           = merge;
2044a560ef98SHong Zhang 
20454222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ;
2046f96d37fcSHong Zhang 
2047f96d37fcSHong Zhang #if defined(PETSC_USE_INFO)
2048f96d37fcSHong Zhang   if (bi[pn] != 0) {
20499566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", nspacedouble, (double)fill, (double)afill));
20509566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatTransposeMatMult(A,B,MatReuse,%g,&C) for best performance.\n", (double)afill));
2051f96d37fcSHong Zhang   } else {
20529566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
2053f96d37fcSHong Zhang   }
2054f96d37fcSHong Zhang #endif
20553ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2056f96d37fcSHong Zhang }
20574222ddf1SHong Zhang 
2058d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_MPIAIJ_MPIAIJ(Mat C)
2059d71ae5a4SJacob Faibussowitsch {
20604222ddf1SHong Zhang   Mat_Product *product = C->product;
20614222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
20624222ddf1SHong Zhang   PetscReal    fill = product->fill;
20634222ddf1SHong Zhang   PetscBool    flg;
20644222ddf1SHong Zhang 
20654222ddf1SHong Zhang   PetscFunctionBegin;
20664222ddf1SHong Zhang   /* scalable */
20679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "scalable", &flg));
20684222ddf1SHong Zhang   if (flg) {
20699566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ(A, B, fill, C));
20704222ddf1SHong Zhang     goto next;
20714222ddf1SHong Zhang   }
20724222ddf1SHong Zhang 
20734222ddf1SHong Zhang   /* nonscalable */
20749566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "nonscalable", &flg));
20754222ddf1SHong Zhang   if (flg) {
20769566063dSJacob Faibussowitsch     PetscCall(MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ_nonscalable(A, B, fill, C));
20774222ddf1SHong Zhang     goto next;
20784222ddf1SHong Zhang   }
20794222ddf1SHong Zhang 
20804222ddf1SHong Zhang   /* matmatmult */
20819566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
20824222ddf1SHong Zhang   if (flg) {
20834222ddf1SHong Zhang     Mat        At;
20844222ddf1SHong Zhang     Mat_APMPI *ptap;
20854222ddf1SHong Zhang 
20869566063dSJacob Faibussowitsch     PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
20879566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_MPIAIJ_MPIAIJ(At, B, fill, C));
20886718818eSStefano Zampini     ptap = (Mat_APMPI *)C->product->data;
20894222ddf1SHong Zhang     if (ptap) {
20904222ddf1SHong Zhang       ptap->Pt            = At;
20916718818eSStefano Zampini       C->product->destroy = MatDestroy_MPIAIJ_PtAP;
20924222ddf1SHong Zhang     }
20934222ddf1SHong Zhang     C->ops->transposematmultnumeric = MatTransposeMatMultNumeric_MPIAIJ_MPIAIJ_matmatmult;
20944222ddf1SHong Zhang     goto next;
20954222ddf1SHong Zhang   }
20964222ddf1SHong Zhang 
20974e84afc0SStefano Zampini   /* backend general code */
20989566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "backend", &flg));
20994e84afc0SStefano Zampini   if (flg) {
21009566063dSJacob Faibussowitsch     PetscCall(MatProductSymbolic_MPIAIJBACKEND(C));
21013ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
21024e84afc0SStefano Zampini   }
21034e84afc0SStefano Zampini 
21044222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatProduct type is not supported");
21054222ddf1SHong Zhang 
21064222ddf1SHong Zhang next:
21074222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB;
21083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21094222ddf1SHong Zhang }
21104222ddf1SHong Zhang 
21114222ddf1SHong Zhang /* Set options for MatMatMultxxx_MPIAIJ_MPIAIJ */
2112d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AB(Mat C)
2113d71ae5a4SJacob Faibussowitsch {
21144222ddf1SHong Zhang   Mat_Product *product = C->product;
21154222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21164222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
21174e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "seqmpi", "backend", "hypre"};
21184e84afc0SStefano Zampini   PetscInt    nalg        = 5;
21194222ddf1SHong Zhang #else
21209371c9d4SSatish Balay   const char *algTypes[4] = {
21219371c9d4SSatish Balay     "scalable",
21229371c9d4SSatish Balay     "nonscalable",
21239371c9d4SSatish Balay     "seqmpi",
21249371c9d4SSatish Balay     "backend",
21259371c9d4SSatish Balay   };
21264e84afc0SStefano Zampini   PetscInt    nalg        = 4;
21274222ddf1SHong Zhang #endif
21284222ddf1SHong Zhang   PetscInt  alg = 1; /* set nonscalable algorithm as default */
21294222ddf1SHong Zhang   PetscBool flg;
21304222ddf1SHong Zhang   MPI_Comm  comm;
21314222ddf1SHong Zhang 
21324222ddf1SHong Zhang   PetscFunctionBegin;
21339566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21344222ddf1SHong Zhang 
21354222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
21369566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
21374222ddf1SHong Zhang   if (flg) {
21389566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21394222ddf1SHong Zhang 
21404222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
21414222ddf1SHong Zhang     if (B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
21424222ddf1SHong Zhang       MatInfo   Ainfo, Binfo;
21434222ddf1SHong Zhang       PetscInt  nz_local;
21444222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
21454222ddf1SHong Zhang 
21469566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
21479566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
21484222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
21494222ddf1SHong Zhang 
21504222ddf1SHong Zhang       if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
21511c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
21524222ddf1SHong Zhang 
21534222ddf1SHong Zhang       if (alg_scalable) {
21544222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
21559566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21569566063dSJacob Faibussowitsch         PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
21574222ddf1SHong Zhang       }
21584222ddf1SHong Zhang     }
21594222ddf1SHong Zhang   }
21604222ddf1SHong Zhang 
21614222ddf1SHong Zhang   /* Get runtime option */
21624222ddf1SHong Zhang   if (product->api_user) {
2163d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
21649566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2165d0609cedSBarry Smith     PetscOptionsEnd();
21664222ddf1SHong Zhang   } else {
2167d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
21689566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2169d0609cedSBarry Smith     PetscOptionsEnd();
21704222ddf1SHong Zhang   }
217148a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21724222ddf1SHong Zhang 
21734222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB_MPIAIJ_MPIAIJ;
21743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21754222ddf1SHong Zhang }
21764222ddf1SHong Zhang 
2177d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABt(Mat C)
2178d71ae5a4SJacob Faibussowitsch {
21798a9c020eSBarry Smith   PetscFunctionBegin;
21808a9c020eSBarry Smith   PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
21818a9c020eSBarry Smith   C->ops->productsymbolic = MatProductSymbolic_ABt_MPIAIJ_MPIAIJ;
21823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21838a9c020eSBarry Smith }
21848a9c020eSBarry Smith 
21854222ddf1SHong Zhang /* Set options for MatTransposeMatMultXXX_MPIAIJ_MPIAIJ */
2186d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_AtB(Mat C)
2187d71ae5a4SJacob Faibussowitsch {
21884222ddf1SHong Zhang   Mat_Product *product = C->product;
21894222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
21904e84afc0SStefano Zampini   const char  *algTypes[4] = {"scalable", "nonscalable", "at*b", "backend"};
21914e84afc0SStefano Zampini   PetscInt     nalg        = 4;
21924222ddf1SHong Zhang   PetscInt     alg         = 1; /* set default algorithm  */
21934222ddf1SHong Zhang   PetscBool    flg;
21944222ddf1SHong Zhang   MPI_Comm     comm;
21954222ddf1SHong Zhang 
21964222ddf1SHong Zhang   PetscFunctionBegin;
21974222ddf1SHong Zhang   /* Check matrix local sizes */
21989566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
21999371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == B->rmap->rstart && A->rmap->rend == B->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A (%" PetscInt_FMT ", %" PetscInt_FMT ") != B (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22009371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, B->rmap->rstart, B->rmap->rend);
22014222ddf1SHong Zhang 
22024222ddf1SHong Zhang   /* Set default algorithm */
22039566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
220448a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22054222ddf1SHong Zhang 
22064222ddf1SHong Zhang   /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22074222ddf1SHong Zhang   if (alg && B->cmap->N > 100000) { /* may switch to scalable algorithm as default */
22084222ddf1SHong Zhang     MatInfo   Ainfo, Binfo;
22094222ddf1SHong Zhang     PetscInt  nz_local;
22104222ddf1SHong Zhang     PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22114222ddf1SHong Zhang 
22129566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22139566063dSJacob Faibussowitsch     PetscCall(MatGetInfo(B, MAT_LOCAL, &Binfo));
22144222ddf1SHong Zhang     nz_local = (PetscInt)(Ainfo.nz_allocated + Binfo.nz_allocated);
22154222ddf1SHong Zhang 
22164222ddf1SHong Zhang     if (B->cmap->N > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22171c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
22184222ddf1SHong Zhang 
22194222ddf1SHong Zhang     if (alg_scalable) {
22204222ddf1SHong Zhang       alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22219566063dSJacob Faibussowitsch       PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22229566063dSJacob Faibussowitsch       PetscCall(PetscInfo(B, "Use scalable algorithm, BN %" PetscInt_FMT ", fill*nz_allocated %g\n", B->cmap->N, (double)(product->fill * nz_local)));
22234222ddf1SHong Zhang     }
22244222ddf1SHong Zhang   }
22254222ddf1SHong Zhang 
22264222ddf1SHong Zhang   /* Get runtime option */
22274222ddf1SHong Zhang   if (product->api_user) {
2228d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
22299566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2230d0609cedSBarry Smith     PetscOptionsEnd();
22314222ddf1SHong Zhang   } else {
2232d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
22339566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2234d0609cedSBarry Smith     PetscOptionsEnd();
22354222ddf1SHong Zhang   }
223648a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22374222ddf1SHong Zhang 
22384222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_MPIAIJ_MPIAIJ;
22393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22404222ddf1SHong Zhang }
22414222ddf1SHong Zhang 
2242d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_PtAP(Mat C)
2243d71ae5a4SJacob Faibussowitsch {
22444222ddf1SHong Zhang   Mat_Product *product = C->product;
22454222ddf1SHong Zhang   Mat          A = product->A, P = product->B;
22464222ddf1SHong Zhang   MPI_Comm     comm;
22474222ddf1SHong Zhang   PetscBool    flg;
22484222ddf1SHong Zhang   PetscInt     alg = 1; /* set default algorithm */
22494222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
22504e84afc0SStefano Zampini   const char *algTypes[5] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend"};
22514222ddf1SHong Zhang   PetscInt    nalg        = 5;
22524e84afc0SStefano Zampini #else
22534e84afc0SStefano Zampini   const char *algTypes[6] = {"scalable", "nonscalable", "allatonce", "allatonce_merged", "backend", "hypre"};
22544e84afc0SStefano Zampini   PetscInt    nalg        = 6;
22554222ddf1SHong Zhang #endif
22564222ddf1SHong Zhang   PetscInt pN = P->cmap->N;
22574222ddf1SHong Zhang 
22584222ddf1SHong Zhang   PetscFunctionBegin;
22594222ddf1SHong Zhang   /* Check matrix local sizes */
22609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)C, &comm));
22619371c9d4SSatish Balay   PetscCheck(A->rmap->rstart == P->rmap->rstart && A->rmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Arow (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22629371c9d4SSatish Balay              A->rmap->rstart, A->rmap->rend, P->rmap->rstart, P->rmap->rend);
22639371c9d4SSatish Balay   PetscCheck(A->cmap->rstart == P->rmap->rstart && A->cmap->rend == P->rmap->rend, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, Acol (%" PetscInt_FMT ", %" PetscInt_FMT ") != Prow (%" PetscInt_FMT ",%" PetscInt_FMT ")",
22649371c9d4SSatish Balay              A->cmap->rstart, A->cmap->rend, P->rmap->rstart, P->rmap->rend);
22654222ddf1SHong Zhang 
22664222ddf1SHong Zhang   /* Set "nonscalable" as default algorithm */
22679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
22684222ddf1SHong Zhang   if (flg) {
22699566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22704222ddf1SHong Zhang 
22714222ddf1SHong Zhang     /* Set "scalable" as default if BN and local nonzeros of A and B are large */
22724222ddf1SHong Zhang     if (pN > 100000) {
22734222ddf1SHong Zhang       MatInfo   Ainfo, Pinfo;
22744222ddf1SHong Zhang       PetscInt  nz_local;
22754222ddf1SHong Zhang       PetscBool alg_scalable_loc = PETSC_FALSE, alg_scalable;
22764222ddf1SHong Zhang 
22779566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(A, MAT_LOCAL, &Ainfo));
22789566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(P, MAT_LOCAL, &Pinfo));
22794222ddf1SHong Zhang       nz_local = (PetscInt)(Ainfo.nz_allocated + Pinfo.nz_allocated);
22804222ddf1SHong Zhang 
22814222ddf1SHong Zhang       if (pN > product->fill * nz_local) alg_scalable_loc = PETSC_TRUE;
22821c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&alg_scalable_loc, &alg_scalable, 1, MPIU_BOOL, MPI_LOR, comm));
22834222ddf1SHong Zhang 
22844222ddf1SHong Zhang       if (alg_scalable) {
22854222ddf1SHong Zhang         alg = 0; /* scalable algorithm would 50% slower than nonscalable algorithm */
22869566063dSJacob Faibussowitsch         PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
22874222ddf1SHong Zhang       }
22884222ddf1SHong Zhang     }
22894222ddf1SHong Zhang   }
22904222ddf1SHong Zhang 
22914222ddf1SHong Zhang   /* Get runtime option */
22924222ddf1SHong Zhang   if (product->api_user) {
2293d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
22949566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2295d0609cedSBarry Smith     PetscOptionsEnd();
22964222ddf1SHong Zhang   } else {
2297d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
22989566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[alg], &alg, &flg));
2299d0609cedSBarry Smith     PetscOptionsEnd();
23004222ddf1SHong Zhang   }
230148a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23024222ddf1SHong Zhang 
23034222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_MPIAIJ_MPIAIJ;
23043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23054222ddf1SHong Zhang }
23064222ddf1SHong Zhang 
2307d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_RARt(Mat C)
2308d71ae5a4SJacob Faibussowitsch {
23094222ddf1SHong Zhang   Mat_Product *product = C->product;
23104222ddf1SHong Zhang   Mat          A = product->A, R = product->B;
23114222ddf1SHong Zhang 
23124222ddf1SHong Zhang   PetscFunctionBegin;
23134222ddf1SHong Zhang   /* Check matrix local sizes */
23149371c9d4SSatish Balay   PetscCheck(A->cmap->n == R->cmap->n && A->rmap->n == R->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Matrix local dimensions are incompatible, A local (%" PetscInt_FMT ", %" PetscInt_FMT "), R local (%" PetscInt_FMT ",%" PetscInt_FMT ")", A->rmap->n,
23159371c9d4SSatish Balay              A->rmap->n, R->rmap->n, R->cmap->n);
23164222ddf1SHong Zhang 
23174222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_MPIAIJ_MPIAIJ;
23183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23194222ddf1SHong Zhang }
23204222ddf1SHong Zhang 
23214222ddf1SHong Zhang /*
23224222ddf1SHong Zhang  Set options for ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm
23234222ddf1SHong Zhang */
2324d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_MPIAIJ_ABC(Mat C)
2325d71ae5a4SJacob Faibussowitsch {
23264222ddf1SHong Zhang   Mat_Product *product     = C->product;
23274222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
23284222ddf1SHong Zhang   PetscInt     alg         = 1; /* default algorithm */
23294222ddf1SHong Zhang   const char  *algTypes[3] = {"scalable", "nonscalable", "seqmpi"};
23304222ddf1SHong Zhang   PetscInt     nalg        = 3;
23314222ddf1SHong Zhang 
23324222ddf1SHong Zhang   PetscFunctionBegin;
23334222ddf1SHong Zhang   /* Set default algorithm */
23349566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
233548a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23364222ddf1SHong Zhang 
23374222ddf1SHong Zhang   /* Get runtime option */
23384222ddf1SHong Zhang   if (product->api_user) {
2339d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
23409566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2341d0609cedSBarry Smith     PetscOptionsEnd();
23424222ddf1SHong Zhang   } else {
2343d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
23449566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2345d0609cedSBarry Smith     PetscOptionsEnd();
23464222ddf1SHong Zhang   }
234748a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
23484222ddf1SHong Zhang 
23494222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_MPIAIJ_MPIAIJ_MPIAIJ;
23504222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
23513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23524222ddf1SHong Zhang }
23534222ddf1SHong Zhang 
2354d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_MPIAIJ(Mat C)
2355d71ae5a4SJacob Faibussowitsch {
23564222ddf1SHong Zhang   Mat_Product *product = C->product;
23574222ddf1SHong Zhang 
23584222ddf1SHong Zhang   PetscFunctionBegin;
23594222ddf1SHong Zhang   switch (product->type) {
2360d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2361d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AB(C));
2362d71ae5a4SJacob Faibussowitsch     break;
2363d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2364d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABt(C));
2365d71ae5a4SJacob Faibussowitsch     break;
2366d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2367d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_AtB(C));
2368d71ae5a4SJacob Faibussowitsch     break;
2369d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_PtAP:
2370d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_PtAP(C));
2371d71ae5a4SJacob Faibussowitsch     break;
2372d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_RARt:
2373d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_RARt(C));
2374d71ae5a4SJacob Faibussowitsch     break;
2375d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABC:
2376d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_MPIAIJ_ABC(C));
2377d71ae5a4SJacob Faibussowitsch     break;
2378d71ae5a4SJacob Faibussowitsch   default:
2379d71ae5a4SJacob Faibussowitsch     break;
23804222ddf1SHong Zhang   }
23813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23824222ddf1SHong Zhang }
2383