1 2 /* 3 Defines matrix-matrix product routines for pairs of MPIAIJ matrices 4 C = A * B 5 */ 6 #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 7 #include <../src/mat/utils/freespace.h> 8 #include <../src/mat/impls/aij/mpi/mpiaij.h> 9 #include <petscbt.h> 10 #include <../src/mat/impls/dense/mpi/mpidense.h> 11 /* 12 #define DEBUG_MATMATMULT 13 */ 14 #undef __FUNCT__ 15 #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ" 16 PetscErrorCode MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C) 17 { 18 PetscErrorCode ierr; 19 20 PetscFunctionBegin; 21 if (scall == MAT_INITIAL_MATRIX){ 22 ierr = PetscLogEventBegin(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 23 ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr); 24 ierr = PetscLogEventEnd(MAT_MatMultSymbolic,A,B,0,0);CHKERRQ(ierr); 25 } 26 ierr = PetscLogEventBegin(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 27 ierr = (*(*C)->ops->matmultnumeric)(A,B,*C);CHKERRQ(ierr); 28 ierr = PetscLogEventEnd(MAT_MatMultNumeric,A,B,0,0);CHKERRQ(ierr); 29 PetscFunctionReturn(0); 30 } 31 32 #undef __FUNCT__ 33 #define __FUNCT__ "PetscContainerDestroy_Mat_MatMatMultMPI" 34 PetscErrorCode PetscContainerDestroy_Mat_MatMatMultMPI(void *ptr) 35 { 36 PetscErrorCode ierr; 37 Mat_MatMatMultMPI *mult=(Mat_MatMatMultMPI*)ptr; 38 39 PetscFunctionBegin; 40 ierr = ISDestroy(&mult->isrowa);CHKERRQ(ierr); 41 ierr = ISDestroy(&mult->isrowb);CHKERRQ(ierr); 42 ierr = ISDestroy(&mult->iscolb);CHKERRQ(ierr); 43 ierr = MatDestroy(&mult->C_seq);CHKERRQ(ierr); 44 ierr = MatDestroy(&mult->A_loc);CHKERRQ(ierr); 45 ierr = MatDestroy(&mult->B_seq);CHKERRQ(ierr); 46 ierr = PetscFree(mult);CHKERRQ(ierr); 47 PetscFunctionReturn(0); 48 } 49 50 #undef __FUNCT__ 51 #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult" 52 PetscErrorCode MatDestroy_MPIAIJ_MatMatMult(Mat A) 53 { 54 PetscErrorCode ierr; 55 Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 56 Mat_PtAPMPI *ptap=a->ptap; 57 58 PetscFunctionBegin; 59 ierr = PetscFree2(ptap->startsj,ptap->startsj_r);CHKERRQ(ierr); 60 ierr = PetscFree(ptap->bufa);CHKERRQ(ierr); 61 ierr = MatDestroy(&ptap->P_loc);CHKERRQ(ierr); 62 ierr = MatDestroy(&ptap->P_oth);CHKERRQ(ierr); 63 ierr = PetscFree(ptap->api);CHKERRQ(ierr); 64 ierr = PetscFree(ptap->apj);CHKERRQ(ierr); 65 ierr = PetscFree(ptap->apa);CHKERRQ(ierr); 66 ierr = ptap->destroy(A);CHKERRQ(ierr); 67 ierr = PetscFree(ptap);CHKERRQ(ierr); 68 PetscFunctionReturn(0); 69 } 70 71 #undef __FUNCT__ 72 #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult_32" 73 PetscErrorCode MatDestroy_MPIAIJ_MatMatMult_32(Mat A) 74 { 75 PetscErrorCode ierr; 76 PetscContainer container; 77 Mat_MatMatMultMPI *mult=PETSC_NULL; 78 79 PetscFunctionBegin; 80 ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 81 if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 82 ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 83 A->ops->destroy = mult->destroy; 84 A->ops->duplicate = mult->duplicate; 85 if (A->ops->destroy) { 86 ierr = (*A->ops->destroy)(A);CHKERRQ(ierr); 87 } 88 ierr = PetscObjectCompose((PetscObject)A,"Mat_MatMatMultMPI",0);CHKERRQ(ierr); 89 PetscFunctionReturn(0); 90 } 91 92 #undef __FUNCT__ 93 #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult_32" 94 PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult_32(Mat A, MatDuplicateOption op, Mat *M) 95 { 96 PetscErrorCode ierr; 97 Mat_MatMatMultMPI *mult; 98 PetscContainer container; 99 100 PetscFunctionBegin; 101 ierr = PetscObjectQuery((PetscObject)A,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 102 if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 103 ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 104 /* Note: the container is not duplicated, because it requires deep copying of 105 several large data sets (see PetscContainerDestroy_Mat_MatMatMultMPI()). 106 These data sets are only used for repeated calling of MatMatMultNumeric(). 107 *M is unlikely being used in this way. Thus we create *M with pure mpiaij format */ 108 ierr = (*mult->duplicate)(A,op,M);CHKERRQ(ierr); 109 (*M)->ops->destroy = mult->destroy; /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's container! */ 110 (*M)->ops->duplicate = mult->duplicate; /* = MatDuplicate_MPIAIJ */ 111 PetscFunctionReturn(0); 112 } 113 114 #undef __FUNCT__ 115 #define __FUNCT__ "MatDuplicate_MPIAIJ_MatMatMult" 116 PetscErrorCode MatDuplicate_MPIAIJ_MatMatMult(Mat A, MatDuplicateOption op, Mat *M) 117 { 118 PetscErrorCode ierr; 119 Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 120 Mat_PtAPMPI *ptap=a->ptap; 121 122 PetscFunctionBegin; 123 ierr = (*ptap->duplicate)(A,op,M);CHKERRQ(ierr); 124 (*M)->ops->destroy = ptap->destroy; /* = MatDestroy_MPIAIJ, *M doesn't duplicate A's special structure! */ 125 (*M)->ops->duplicate = ptap->duplicate; /* = MatDuplicate_MPIAIJ */ 126 PetscFunctionReturn(0); 127 } 128 129 #undef __FUNCT__ 130 #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ" 131 PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat P,Mat C) 132 { 133 PetscErrorCode ierr; 134 Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data,*c=(Mat_MPIAIJ*)C->data; 135 Mat_SeqAIJ *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data; 136 Mat_SeqAIJ *cd=(Mat_SeqAIJ*)(c->A)->data,*co=(Mat_SeqAIJ*)(c->B)->data; 137 PetscInt *adi=ad->i,*adj,*aoi=ao->i,*aoj; 138 PetscScalar *ada,*aoa,*cda=cd->a,*coa=co->a; 139 Mat_SeqAIJ *p_loc,*p_oth; 140 PetscInt *pi_loc,*pj_loc,*pi_oth,*pj_oth,*pj; 141 PetscScalar *pa_loc,*pa_oth,*pa,*apa,valtmp,*ca; 142 PetscInt cm=C->rmap->n,anz,pnz; 143 Mat_PtAPMPI *ptap=c->ptap; 144 PetscInt *api,*apj,*apJ,i,j,k,row; 145 PetscInt rstart=C->rmap->rstart,cstart=C->cmap->rstart; 146 PetscInt cdnz,conz,k0,k1; 147 #if defined(DEBUG_MATMATMULT) 148 PetscMPIInt rank=a->rank; 149 #endif 150 151 PetscFunctionBegin; 152 #if defined(DEBUG_MATMATMULT) 153 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ()...\n",rank); 154 #endif 155 156 /* 1) get P_oth = ptap->P_oth and P_loc = ptap->P_loc */ 157 /*-----------------------------------------------------*/ 158 /* update numerical values of P_oth and P_loc */ 159 ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_REUSE_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr); 160 ierr = MatMPIAIJGetLocalMat(P,MAT_REUSE_MATRIX,&ptap->P_loc);CHKERRQ(ierr); 161 #if defined(DEBUG_MATMATMULT) 162 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] got P_oth and P_loc...\n",rank); 163 #endif 164 165 /* 2) compute numeric C_loc = A_loc*P = Ad*P_loc + Ao*P_oth */ 166 /*----------------------------------------------------------*/ 167 /* get data from symbolic products */ 168 p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data; 169 p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data; 170 pi_loc=p_loc->i; pj_loc=p_loc->j; pa_loc=p_loc->a; 171 pi_oth=p_oth->i; pj_oth=p_oth->j; pa_oth=p_oth->a; 172 173 /* get apa for storing dense row A[i,:]*P */ 174 apa = ptap->apa; 175 176 for (i=0; i<cm; i++) { 177 /* diagonal portion of A */ 178 anz = adi[i+1] - adi[i]; 179 adj = ad->j + adi[i]; 180 ada = ad->a + adi[i]; 181 for (j=0; j<anz; j++) { 182 row = adj[j]; 183 pnz = pi_loc[row+1] - pi_loc[row]; 184 pj = pj_loc + pi_loc[row]; 185 pa = pa_loc + pi_loc[row]; 186 187 /* perform dense axpy */ 188 valtmp = ada[j]; 189 for (k=0; k<pnz; k++){ 190 apa[pj[k]] += valtmp*pa[k]; 191 } 192 ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr); 193 } 194 195 /* off-diagonal portion of A */ 196 anz = aoi[i+1] - aoi[i]; 197 aoj = ao->j + aoi[i]; 198 aoa = ao->a + aoi[i]; 199 for (j=0; j<anz; j++) { 200 row = aoj[j]; 201 pnz = pi_oth[row+1] - pi_oth[row]; 202 pj = pj_oth + pi_oth[row]; 203 pa = pa_oth + pi_oth[row]; 204 205 /* perform dense axpy */ 206 valtmp = aoa[j]; 207 for (k=0; k<pnz; k++){ 208 apa[pj[k]] += valtmp*pa[k]; 209 } 210 ierr = PetscLogFlops(2.0*pnz);CHKERRQ(ierr); 211 } 212 213 /* set values in C */ 214 row = rstart + i; 215 api = ptap->api; 216 apj = ptap->apj; 217 apJ = apj + api[i]; 218 cdnz = cd->i[i+1] - cd->i[i]; 219 conz = co->i[i+1] - co->i[i]; 220 221 /* 1st off-diagoanl part of C */ 222 ca = coa + co->i[i]; 223 k = 0; 224 for (k0=0; k0<conz; k0++){ 225 if (apJ[k] >= cstart) break; 226 ca[k0] = apa[apJ[k]]; 227 apa[apJ[k]] = 0.0; 228 k++; 229 } 230 231 /* diagonal part of C */ 232 ca = cda + cd->i[i]; 233 for (k1=0; k1<cdnz; k1++){ 234 ca[k1] = apa[apJ[k]]; 235 apa[apJ[k]] = 0.0; 236 k++; 237 } 238 239 /* 2nd off-diagoanl part of C */ 240 ca = coa + co->i[i]; 241 for (; k0<conz; k0++){ 242 ca[k0] = apa[apJ[k]]; 243 apa[apJ[k]] = 0.0; 244 k++; 245 } 246 } 247 ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 248 ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 249 #if defined(DEBUG_MATMATMULT) 250 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] exit MatMatMultNumeric_MPIAIJ_MPIAIJ()...\n",rank); 251 #endif 252 PetscFunctionReturn(0); 253 } 254 255 #undef __FUNCT__ 256 #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ" 257 PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat P,PetscReal fill,Mat *C) 258 { 259 PetscErrorCode ierr; 260 MPI_Comm comm=((PetscObject)A)->comm; 261 Mat Cmpi; 262 Mat_PtAPMPI *ptap; 263 PetscFreeSpaceList free_space=PETSC_NULL,current_space=PETSC_NULL; 264 Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data,*c; 265 Mat_SeqAIJ *ad=(Mat_SeqAIJ*)(a->A)->data,*ao=(Mat_SeqAIJ*)(a->B)->data,*p_loc,*p_oth; 266 PetscInt *pi_loc,*pj_loc,*pi_oth,*pj_oth,*dnz,*onz; 267 PetscInt *adi=ad->i,*adj=ad->j,*aoi=ao->i,*aoj=ao->j,rstart=A->rmap->rstart; 268 PetscInt nlnk,*lnk,i,pnz,row,*api,*apj,*Jptr,apnz,nspacedouble=0,j,nzi; 269 PetscInt am=A->rmap->n,pN=P->cmap->N,pn=P->cmap->n,pm=P->rmap->n; 270 PetscBT lnkbt; 271 PetscScalar *apa; 272 PetscReal afill; 273 PetscBool matmatmult_old=PETSC_FALSE; 274 #if defined(DEBUG_MATMATMULT) 275 PetscMPIInt rank=a->rank; 276 #endif 277 278 PetscFunctionBegin; 279 if (A->cmap->rstart != P->rmap->rstart || A->cmap->rend != P->rmap->rend){ 280 SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,P->rmap->rstart,P->rmap->rend); 281 } 282 ierr = PetscOptionsGetBool(PETSC_NULL,"-matmatmult_old",&matmatmult_old,PETSC_NULL);CHKERRQ(ierr); 283 if (matmatmult_old){ 284 ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ_32(A,P,fill,C);;CHKERRQ(ierr); 285 PetscFunctionReturn(0); 286 } 287 288 #if defined(DEBUG_MATMATMULT) 289 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ()...\n",rank); 290 #endif 291 292 /* create struct Mat_PtAPMPI and attached it to C later */ 293 ierr = PetscNew(Mat_PtAPMPI,&ptap);CHKERRQ(ierr); 294 295 /* malloc apa to store dense row A[i,:]*P */ 296 ierr = PetscMalloc(pN*sizeof(PetscScalar),&apa);CHKERRQ(ierr); 297 ierr = PetscMemzero(apa,pN*sizeof(PetscScalar));CHKERRQ(ierr); 298 ptap->apa = apa; 299 #if defined(DEBUG_MATMATMULT) 300 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] Malloc apa is done...\n",rank); 301 #endif 302 303 /* get P_oth by taking rows of P (= non-zero cols of local A) from other processors */ 304 ierr = MatGetBrowsOfAoCols_MPIAIJ(A,P,MAT_INITIAL_MATRIX,&ptap->startsj,&ptap->startsj_r,&ptap->bufa,&ptap->P_oth);CHKERRQ(ierr); 305 #if defined(DEBUG_MATMATMULT) 306 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_oth is done...\n",rank); 307 #endif 308 /* get P_loc by taking all local rows of P */ 309 ierr = MatMPIAIJGetLocalMat(P,MAT_INITIAL_MATRIX,&ptap->P_loc);CHKERRQ(ierr); 310 311 p_loc = (Mat_SeqAIJ*)(ptap->P_loc)->data; 312 p_oth = (Mat_SeqAIJ*)(ptap->P_oth)->data; 313 pi_loc = p_loc->i; pj_loc = p_loc->j; 314 pi_oth = p_oth->i; pj_oth = p_oth->j; 315 316 #if defined(DEBUG_MATMATMULT) 317 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] P_loc is done...\n",rank); 318 #endif 319 320 /* first, compute symbolic AP = A_loc*P = A_diag*P_loc + A_off*P_oth */ 321 /*-------------------------------------------------------------------*/ 322 ierr = PetscMalloc((am+2)*sizeof(PetscInt),&api);CHKERRQ(ierr); 323 ptap->api = api; 324 api[0] = 0; 325 326 /* create and initialize a linked list */ 327 nlnk = pN+1; 328 ierr = PetscLLCreate(pN,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 329 330 /* Initial FreeSpace size is fill*(nnz(A)+nnz(P)) */ 331 ierr = PetscFreeSpaceGet((PetscInt)(fill*(adi[am]+aoi[am]+pi_loc[pm])),&free_space);CHKERRQ(ierr); 332 current_space = free_space; 333 334 ierr = MatPreallocateInitialize(comm,am,pn,dnz,onz);CHKERRQ(ierr); 335 for (i=0; i<am; i++) { 336 apnz = 0; 337 /* diagonal portion of A */ 338 nzi = adi[i+1] - adi[i]; 339 for (j=0; j<nzi; j++){ 340 row = *adj++; 341 pnz = pi_loc[row+1] - pi_loc[row]; 342 Jptr = pj_loc + pi_loc[row]; 343 /* add non-zero cols of P into the sorted linked list lnk */ 344 ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 345 apnz += nlnk; 346 } 347 /* off-diagonal portion of A */ 348 nzi = aoi[i+1] - aoi[i]; 349 for (j=0; j<nzi; j++){ 350 row = *aoj++; 351 pnz = pi_oth[row+1] - pi_oth[row]; 352 Jptr = pj_oth + pi_oth[row]; 353 ierr = PetscLLAddSorted(pnz,Jptr,pN,nlnk,lnk,lnkbt);CHKERRQ(ierr); 354 apnz += nlnk; 355 } 356 357 api[i+1] = api[i] + apnz; 358 359 /* if free space is not available, double the total space in the list */ 360 if (current_space->local_remaining<apnz) { 361 ierr = PetscFreeSpaceGet(apnz+current_space->total_array_size,¤t_space);CHKERRQ(ierr); 362 nspacedouble++; 363 } 364 365 /* Copy data into free space, then initialize lnk */ 366 ierr = PetscLLClean(pN,pN,apnz,lnk,current_space->array,lnkbt);CHKERRQ(ierr); 367 ierr = MatPreallocateSet(i+rstart,apnz,current_space->array,dnz,onz);CHKERRQ(ierr); 368 current_space->array += apnz; 369 current_space->local_used += apnz; 370 current_space->local_remaining -= apnz; 371 } 372 373 /* Allocate space for apj, initialize apj, and */ 374 /* destroy list of free space and other temporary array(s) */ 375 ierr = PetscMalloc((api[am]+1)*sizeof(PetscInt),&ptap->apj);CHKERRQ(ierr); 376 apj = ptap->apj; 377 ierr = PetscFreeSpaceContiguous(&free_space,ptap->apj);CHKERRQ(ierr); 378 ierr = PetscLLDestroy(lnk,lnkbt);CHKERRQ(ierr); 379 #if defined(DEBUG_MATMATMULT) 380 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] AP is done...\n",rank); 381 #endif 382 383 /* create and assemble symbolic parallel matrix Cmpi */ 384 /*----------------------------------------------------*/ 385 ierr = MatCreate(comm,&Cmpi);CHKERRQ(ierr); 386 ierr = MatSetSizes(Cmpi,am,pn,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 387 ierr = MatSetType(Cmpi,MATMPIAIJ);CHKERRQ(ierr); 388 ierr = MatMPIAIJSetPreallocation(Cmpi,0,dnz,0,onz);CHKERRQ(ierr); 389 ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 390 ierr = MatSetBlockSize(Cmpi,1);CHKERRQ(ierr); 391 for (i=0; i<am; i++){ 392 row = i + rstart; 393 apnz = api[i+1] - api[i]; 394 ierr = MatSetValues(Cmpi,1,&row,apnz,apj,apa,INSERT_VALUES);CHKERRQ(ierr); 395 apj += apnz; 396 } 397 ierr = MatAssemblyBegin(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 398 ierr = MatAssemblyEnd(Cmpi,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 399 400 ptap->destroy = Cmpi->ops->destroy; 401 ptap->duplicate = Cmpi->ops->duplicate; 402 Cmpi->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ; 403 Cmpi->ops->destroy = MatDestroy_MPIAIJ_MatMatMult; 404 Cmpi->ops->duplicate = MatDuplicate_MPIAIJ_MatMatMult; 405 406 /* attach the supporting struct to Cmpi for reuse */ 407 c = (Mat_MPIAIJ*)Cmpi->data; 408 c->ptap = ptap; 409 410 *C = Cmpi; 411 412 /* set MatInfo */ 413 afill = (PetscReal)api[am]/(adi[am]+aoi[am]+pi_loc[pm]) + 1.e-5; 414 if (afill < 1.0) afill = 1.0; 415 Cmpi->info.mallocs = nspacedouble; 416 Cmpi->info.fill_ratio_given = fill; 417 Cmpi->info.fill_ratio_needed = afill; 418 419 #if defined(PETSC_USE_INFO) 420 if (api[am]) { 421 ierr = PetscInfo3(Cmpi,"Reallocs %D; Fill ratio: given %G needed %G.\n",nspacedouble,fill,afill);CHKERRQ(ierr); 422 ierr = PetscInfo1(Cmpi,"Use MatMatMult(A,B,MatReuse,%G,&C) for best performance.;\n",afill);CHKERRQ(ierr); 423 } else { 424 ierr = PetscInfo(Cmpi,"Empty matrix product\n");CHKERRQ(ierr); 425 } 426 #endif 427 #if defined(DEBUG_MATMATMULT) 428 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] exit MatMatMultSymbolic_MPIAIJ_MPIAIJ()...\n",rank); 429 #endif 430 PetscFunctionReturn(0); 431 } 432 433 /* implementation used in PETSc-3.2 */ 434 /* This routine is called ONLY in the case of reusing previously computed symbolic C */ 435 #undef __FUNCT__ 436 #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ_32" 437 PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIAIJ_32(Mat A,Mat B,Mat C) 438 { 439 PetscErrorCode ierr; 440 Mat *seq; 441 Mat_MatMatMultMPI *mult; 442 PetscContainer container; 443 444 PetscFunctionBegin; 445 ierr = PetscObjectQuery((PetscObject)C,"Mat_MatMatMultMPI",(PetscObject *)&container);CHKERRQ(ierr); 446 if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 447 ierr = PetscContainerGetPointer(container,(void **)&mult);CHKERRQ(ierr); 448 449 if (mult->skipNumeric){ /* first numeric product is done during symbolic product */ 450 mult->skipNumeric = PETSC_FALSE; 451 PetscFunctionReturn(0); 452 } 453 #if defined(DEBUG_MATMATMULT) 454 PetscMPIInt rank; 455 ierr = MPI_Comm_rank(((PetscObject)C)->comm,&rank);CHKERRQ(ierr); 456 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultNumeric_MPIAIJ_MPIAIJ_32()...\n",rank); 457 #endif 458 459 seq = &mult->B_seq; 460 ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr); 461 mult->B_seq = *seq; 462 463 seq = &mult->A_loc; 464 ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_REUSE_MATRIX,&seq);CHKERRQ(ierr); 465 mult->A_loc = *seq; 466 467 ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ_SparseAxpy(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr); 468 469 ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); 470 ierr = MatMerge(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 471 PetscFunctionReturn(0); 472 } 473 474 /* numeric product is computed as well */ 475 #undef __FUNCT__ 476 #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ_32" 477 PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIAIJ_32(Mat A,Mat B,PetscReal fill,Mat *C) 478 { 479 PetscErrorCode ierr; 480 Mat_MatMatMultMPI *mult; 481 PetscContainer container; 482 Mat AB,*seq; 483 Mat_MPIAIJ *a=(Mat_MPIAIJ*)A->data; 484 PetscInt *idx,i,start,ncols,nzA,nzB,*cmap,imark; 485 #if defined(DEBUG_MATMATMULT) 486 PetscMPIInt rank=a->rank; 487 #endif 488 489 PetscFunctionBegin; 490 #if defined(DEBUG_MATMATMULT) 491 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] call MatMatMultSymbolic_MPIAIJ_MPIAIJ_32()...\n",rank); 492 #endif 493 if (A->cmap->rstart != B->rmap->rstart || A->cmap->rend != B->rmap->rend){ 494 SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Matrix local dimensions are incompatible, (%D, %D) != (%D,%D)",A->cmap->rstart,A->cmap->rend,B->rmap->rstart,B->rmap->rend); 495 } 496 497 ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr); 498 499 /* get isrowb: nonzero col of A */ 500 start = A->cmap->rstart; 501 cmap = a->garray; 502 nzA = a->A->cmap->n; 503 nzB = a->B->cmap->n; 504 ierr = PetscMalloc((nzA+nzB)*sizeof(PetscInt), &idx);CHKERRQ(ierr); 505 ncols = 0; 506 for (i=0; i<nzB; i++) { /* row < local row index */ 507 if (cmap[i] < start) idx[ncols++] = cmap[i]; 508 else break; 509 } 510 imark = i; 511 for (i=0; i<nzA; i++) idx[ncols++] = start + i; /* local rows */ 512 for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; /* row > local row index */ 513 ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,PETSC_OWN_POINTER,&mult->isrowb);CHKERRQ(ierr); 514 ierr = ISCreateStride(PETSC_COMM_SELF,B->cmap->N,0,1,&mult->iscolb);CHKERRQ(ierr); 515 516 /* get isrowa: all local rows of A */ 517 ierr = ISCreateStride(PETSC_COMM_SELF,A->rmap->n,A->rmap->rstart,1,&mult->isrowa);CHKERRQ(ierr); 518 519 /* Below should go to MatMatMultNumeric_MPIAIJ_MPIAIJ() - How to generate C there? */ 520 /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */ 521 ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr); 522 mult->B_seq = *seq; 523 ierr = PetscFree(seq);CHKERRQ(ierr); 524 #if defined(DEBUG_MATMATMULT) 525 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] B_seq is done...\n",rank); 526 #endif 527 528 /* create a seq matrix A_seq = submatrix of A by taking all local rows of A */ 529 ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_INITIAL_MATRIX,&seq);CHKERRQ(ierr); 530 mult->A_loc = *seq; 531 ierr = PetscFree(seq);CHKERRQ(ierr); 532 #if defined(DEBUG_MATMATMULT) 533 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] A_seq is done...\n",rank); 534 #endif 535 536 /* compute C_seq = A_seq * B_seq */ 537 ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,fill,&mult->C_seq);CHKERRQ(ierr); 538 ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ(mult->A_loc,mult->B_seq,mult->C_seq);CHKERRQ(ierr); 539 #if defined(DEBUG_MATMATMULT) 540 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] C_seq is done...\n",rank); 541 #endif 542 543 /* create mpi matrix C by concatinating C_seq */ 544 ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); /* prevent C_seq being destroyed by MatMerge() */ 545 ierr = MatMergeSymbolic(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,&AB);CHKERRQ(ierr); 546 ierr = MatMergeNumeric(((PetscObject)A)->comm,mult->C_seq,B->cmap->n,AB);CHKERRQ(ierr); 547 #if defined(DEBUG_MATMATMULT) 548 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] Merge is done...\n",rank); 549 #endif 550 551 /* attach the supporting struct to C for reuse of symbolic C */ 552 ierr = PetscContainerCreate(PETSC_COMM_SELF,&container);CHKERRQ(ierr); 553 ierr = PetscContainerSetPointer(container,mult);CHKERRQ(ierr); 554 ierr = PetscContainerSetUserDestroy(container,PetscContainerDestroy_Mat_MatMatMultMPI);CHKERRQ(ierr); 555 ierr = PetscObjectCompose((PetscObject)AB,"Mat_MatMatMultMPI",(PetscObject)container);CHKERRQ(ierr); 556 ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 557 mult->skipNumeric = PETSC_TRUE; /* a numeric product is done here */ 558 mult->destroy = AB->ops->destroy; 559 mult->duplicate = AB->ops->duplicate; 560 AB->ops->matmultnumeric = MatMatMultNumeric_MPIAIJ_MPIAIJ_32; 561 AB->ops->destroy = MatDestroy_MPIAIJ_MatMatMult_32; 562 AB->ops->duplicate = MatDuplicate_MPIAIJ_MatMatMult_32; 563 AB->ops->matmult = MatMatMult_MPIAIJ_MPIAIJ; 564 *C = AB; 565 #if defined(DEBUG_MATMATMULT) 566 if (!rank) ierr = PetscPrintf(PETSC_COMM_SELF,"[%d] exit MatMatMultSymbolic_MPIAIJ_MPIAIJ_32()...\n",rank); 567 #endif 568 PetscFunctionReturn(0); 569 } 570 571 #undef __FUNCT__ 572 #define __FUNCT__ "MatMatMult_MPIAIJ_MPIDense" 573 PetscErrorCode MatMatMult_MPIAIJ_MPIDense(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 574 { 575 PetscErrorCode ierr; 576 577 PetscFunctionBegin; 578 if (scall == MAT_INITIAL_MATRIX){ 579 ierr = MatMatMultSymbolic_MPIAIJ_MPIDense(A,B,fill,C);CHKERRQ(ierr); 580 } 581 ierr = MatMatMultNumeric_MPIAIJ_MPIDense(A,B,*C);CHKERRQ(ierr); 582 PetscFunctionReturn(0); 583 } 584 585 typedef struct { 586 Mat workB; 587 PetscScalar *rvalues,*svalues; 588 MPI_Request *rwaits,*swaits; 589 } MPIAIJ_MPIDense; 590 591 #undef __FUNCT__ 592 #define __FUNCT__ "MPIAIJ_MPIDenseDestroy" 593 PetscErrorCode MPIAIJ_MPIDenseDestroy(void *ctx) 594 { 595 MPIAIJ_MPIDense *contents = (MPIAIJ_MPIDense*) ctx; 596 PetscErrorCode ierr; 597 598 PetscFunctionBegin; 599 ierr = MatDestroy(&contents->workB);CHKERRQ(ierr); 600 ierr = PetscFree4(contents->rvalues,contents->svalues,contents->rwaits,contents->swaits);CHKERRQ(ierr); 601 ierr = PetscFree(contents);CHKERRQ(ierr); 602 PetscFunctionReturn(0); 603 } 604 605 #undef __FUNCT__ 606 #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIDense" 607 PetscErrorCode MatMatMultSymbolic_MPIAIJ_MPIDense(Mat A,Mat B,PetscReal fill,Mat *C) 608 { 609 PetscErrorCode ierr; 610 Mat_MPIAIJ *aij = (Mat_MPIAIJ*) A->data; 611 PetscInt nz = aij->B->cmap->n; 612 PetscContainer container; 613 MPIAIJ_MPIDense *contents; 614 VecScatter ctx = aij->Mvctx; 615 VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata; 616 VecScatter_MPI_General *to = ( VecScatter_MPI_General*) ctx->todata; 617 PetscInt m=A->rmap->n,n=B->cmap->n; 618 619 PetscFunctionBegin; 620 ierr = MatCreate(((PetscObject)B)->comm,C);CHKERRQ(ierr); 621 ierr = MatSetSizes(*C,m,n,A->rmap->N,B->cmap->N);CHKERRQ(ierr); 622 ierr = MatSetType(*C,MATMPIDENSE);CHKERRQ(ierr); 623 ierr = MatAssemblyBegin(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 624 ierr = MatAssemblyEnd(*C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 625 (*C)->ops->matmult = MatMatMult_MPIAIJ_MPIDense; 626 627 ierr = PetscNew(MPIAIJ_MPIDense,&contents);CHKERRQ(ierr); 628 /* Create work matrix used to store off processor rows of B needed for local product */ 629 ierr = MatCreateSeqDense(PETSC_COMM_SELF,nz,B->cmap->N,PETSC_NULL,&contents->workB);CHKERRQ(ierr); 630 /* Create work arrays needed */ 631 ierr = PetscMalloc4(B->cmap->N*from->starts[from->n],PetscScalar,&contents->rvalues, 632 B->cmap->N*to->starts[to->n],PetscScalar,&contents->svalues, 633 from->n,MPI_Request,&contents->rwaits, 634 to->n,MPI_Request,&contents->swaits);CHKERRQ(ierr); 635 636 ierr = PetscContainerCreate(((PetscObject)A)->comm,&container);CHKERRQ(ierr); 637 ierr = PetscContainerSetPointer(container,contents);CHKERRQ(ierr); 638 ierr = PetscContainerSetUserDestroy(container,MPIAIJ_MPIDenseDestroy);CHKERRQ(ierr); 639 ierr = PetscObjectCompose((PetscObject)(*C),"workB",(PetscObject)container);CHKERRQ(ierr); 640 ierr = PetscContainerDestroy(&container);CHKERRQ(ierr); 641 PetscFunctionReturn(0); 642 } 643 644 #undef __FUNCT__ 645 #define __FUNCT__ "MatMPIDenseScatter" 646 /* 647 Performs an efficient scatter on the rows of B needed by this process; this is 648 a modification of the VecScatterBegin_() routines. 649 */ 650 PetscErrorCode MatMPIDenseScatter(Mat A,Mat B,Mat C,Mat *outworkB) 651 { 652 Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 653 PetscErrorCode ierr; 654 PetscScalar *b,*w,*svalues,*rvalues; 655 VecScatter ctx = aij->Mvctx; 656 VecScatter_MPI_General *from = (VecScatter_MPI_General*) ctx->fromdata; 657 VecScatter_MPI_General *to = ( VecScatter_MPI_General*) ctx->todata; 658 PetscInt i,j,k; 659 PetscInt *sindices,*sstarts,*rindices,*rstarts; 660 PetscMPIInt *sprocs,*rprocs,nrecvs; 661 MPI_Request *swaits,*rwaits; 662 MPI_Comm comm = ((PetscObject)A)->comm; 663 PetscMPIInt tag = ((PetscObject)ctx)->tag,ncols = B->cmap->N, nrows = aij->B->cmap->n,imdex,nrowsB = B->rmap->n; 664 MPI_Status status; 665 MPIAIJ_MPIDense *contents; 666 PetscContainer container; 667 Mat workB; 668 669 PetscFunctionBegin; 670 ierr = PetscObjectQuery((PetscObject)C,"workB",(PetscObject*)&container);CHKERRQ(ierr); 671 if (!container) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Container does not exit"); 672 ierr = PetscContainerGetPointer(container,(void**)&contents);CHKERRQ(ierr); 673 674 workB = *outworkB = contents->workB; 675 if (nrows != workB->rmap->n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Number of rows of workB %D not equal to columns of aij->B %D",nrows,workB->cmap->n); 676 sindices = to->indices; 677 sstarts = to->starts; 678 sprocs = to->procs; 679 swaits = contents->swaits; 680 svalues = contents->svalues; 681 682 rindices = from->indices; 683 rstarts = from->starts; 684 rprocs = from->procs; 685 rwaits = contents->rwaits; 686 rvalues = contents->rvalues; 687 688 ierr = MatGetArray(B,&b);CHKERRQ(ierr); 689 ierr = MatGetArray(workB,&w);CHKERRQ(ierr); 690 691 for (i=0; i<from->n; i++) { 692 ierr = MPI_Irecv(rvalues+ncols*rstarts[i],ncols*(rstarts[i+1]-rstarts[i]),MPIU_SCALAR,rprocs[i],tag,comm,rwaits+i);CHKERRQ(ierr); 693 } 694 695 for (i=0; i<to->n; i++) { 696 /* pack a message at a time */ 697 CHKMEMQ; 698 for (j=0; j<sstarts[i+1]-sstarts[i]; j++){ 699 for (k=0; k<ncols; k++) { 700 svalues[ncols*(sstarts[i] + j) + k] = b[sindices[sstarts[i]+j] + nrowsB*k]; 701 } 702 } 703 CHKMEMQ; 704 ierr = MPI_Isend(svalues+ncols*sstarts[i],ncols*(sstarts[i+1]-sstarts[i]),MPIU_SCALAR,sprocs[i],tag,comm,swaits+i);CHKERRQ(ierr); 705 } 706 707 nrecvs = from->n; 708 while (nrecvs) { 709 ierr = MPI_Waitany(from->n,rwaits,&imdex,&status);CHKERRQ(ierr); 710 nrecvs--; 711 /* unpack a message at a time */ 712 CHKMEMQ; 713 for (j=0; j<rstarts[imdex+1]-rstarts[imdex]; j++){ 714 for (k=0; k<ncols; k++) { 715 w[rindices[rstarts[imdex]+j] + nrows*k] = rvalues[ncols*(rstarts[imdex] + j) + k]; 716 } 717 } 718 CHKMEMQ; 719 } 720 if (to->n) {ierr = MPI_Waitall(to->n,swaits,to->sstatus);CHKERRQ(ierr);} 721 722 ierr = MatRestoreArray(B,&b);CHKERRQ(ierr); 723 ierr = MatRestoreArray(workB,&w);CHKERRQ(ierr); 724 ierr = MatAssemblyBegin(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 725 ierr = MatAssemblyEnd(workB,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 726 PetscFunctionReturn(0); 727 } 728 extern PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat,Mat,Mat); 729 730 #undef __FUNCT__ 731 #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIDense" 732 PetscErrorCode MatMatMultNumeric_MPIAIJ_MPIDense(Mat A,Mat B,Mat C) 733 { 734 PetscErrorCode ierr; 735 Mat_MPIAIJ *aij = (Mat_MPIAIJ*)A->data; 736 Mat_MPIDense *bdense = (Mat_MPIDense*)B->data; 737 Mat_MPIDense *cdense = (Mat_MPIDense*)C->data; 738 Mat workB; 739 740 PetscFunctionBegin; 741 742 /* diagonal block of A times all local rows of B*/ 743 ierr = MatMatMultNumeric_SeqAIJ_SeqDense(aij->A,bdense->A,cdense->A);CHKERRQ(ierr); 744 745 /* get off processor parts of B needed to complete the product */ 746 ierr = MatMPIDenseScatter(A,B,C,&workB);CHKERRQ(ierr); 747 748 /* off-diagonal block of A times nonlocal rows of B */ 749 ierr = MatMatMultNumericAdd_SeqAIJ_SeqDense(aij->B,workB,cdense->A);CHKERRQ(ierr); 750 ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 751 ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 752 PetscFunctionReturn(0); 753 } 754 755