1*aaa7dc30SBarry Smith #include <petscconf.h> 28f86e40fSKarl Rupp #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 365e3cb35SKarl Rupp #include <../src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h> 48f86e40fSKarl Rupp 58f86e40fSKarl Rupp #undef __FUNCT__ 68f86e40fSKarl Rupp #define __FUNCT__ "MatMPIAIJSetPreallocation_MPIAIJViennaCL" 78f86e40fSKarl Rupp PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJViennaCL(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 88f86e40fSKarl Rupp { 98f86e40fSKarl Rupp Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data; 108f86e40fSKarl Rupp PetscErrorCode ierr; 118f86e40fSKarl Rupp 128f86e40fSKarl Rupp PetscFunctionBegin; 138f86e40fSKarl Rupp ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 148f86e40fSKarl Rupp ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 158f86e40fSKarl Rupp if (!B->preallocated) { 168f86e40fSKarl Rupp /* Explicitly create the two MATSEQAIJVIENNACL matrices. */ 178f86e40fSKarl Rupp ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 188f86e40fSKarl Rupp ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 198f86e40fSKarl Rupp ierr = MatSetType(b->A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 20f7daeb2aSKarl Rupp ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 218f86e40fSKarl Rupp ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 228f86e40fSKarl Rupp ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 238f86e40fSKarl Rupp ierr = MatSetType(b->B,MATSEQAIJVIENNACL);CHKERRQ(ierr); 24f7daeb2aSKarl Rupp ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 258f86e40fSKarl Rupp } 268f86e40fSKarl Rupp ierr = MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);CHKERRQ(ierr); 278f86e40fSKarl Rupp ierr = MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);CHKERRQ(ierr); 288f86e40fSKarl Rupp B->preallocated = PETSC_TRUE; 298f86e40fSKarl Rupp PetscFunctionReturn(0); 308f86e40fSKarl Rupp } 318f86e40fSKarl Rupp 328f86e40fSKarl Rupp #undef __FUNCT__ 338f86e40fSKarl Rupp #define __FUNCT__ "MatGetVecs_MPIAIJViennaCL" 348f86e40fSKarl Rupp PetscErrorCode MatGetVecs_MPIAIJViennaCL(Mat mat,Vec *right,Vec *left) 358f86e40fSKarl Rupp { 368f86e40fSKarl Rupp PetscErrorCode ierr; 378f86e40fSKarl Rupp 388f86e40fSKarl Rupp PetscFunctionBegin; 398f86e40fSKarl Rupp if (right) { 408f86e40fSKarl Rupp ierr = VecCreate(PetscObjectComm((PetscObject)mat),right);CHKERRQ(ierr); 418f86e40fSKarl Rupp ierr = VecSetSizes(*right,mat->cmap->n,PETSC_DETERMINE);CHKERRQ(ierr); 428f86e40fSKarl Rupp ierr = VecSetBlockSize(*right,mat->rmap->bs);CHKERRQ(ierr); 438f86e40fSKarl Rupp ierr = VecSetType(*right,VECVIENNACL);CHKERRQ(ierr); 448f86e40fSKarl Rupp ierr = VecSetLayout(*right,mat->cmap);CHKERRQ(ierr); 458f86e40fSKarl Rupp } 468f86e40fSKarl Rupp if (left) { 478f86e40fSKarl Rupp ierr = VecCreate(PetscObjectComm((PetscObject)mat),left);CHKERRQ(ierr); 488f86e40fSKarl Rupp ierr = VecSetSizes(*left,mat->rmap->n,PETSC_DETERMINE);CHKERRQ(ierr); 498f86e40fSKarl Rupp ierr = VecSetBlockSize(*left,mat->rmap->bs);CHKERRQ(ierr); 508f86e40fSKarl Rupp ierr = VecSetType(*left,VECVIENNACL);CHKERRQ(ierr); 518f86e40fSKarl Rupp ierr = VecSetLayout(*left,mat->rmap);CHKERRQ(ierr); 528f86e40fSKarl Rupp } 538f86e40fSKarl Rupp PetscFunctionReturn(0); 548f86e40fSKarl Rupp } 558f86e40fSKarl Rupp 568f86e40fSKarl Rupp 578f86e40fSKarl Rupp #undef __FUNCT__ 588f86e40fSKarl Rupp #define __FUNCT__ "MatDestroy_MPIAIJViennaCL" 598f86e40fSKarl Rupp PetscErrorCode MatDestroy_MPIAIJViennaCL(Mat A) 608f86e40fSKarl Rupp { 618f86e40fSKarl Rupp PetscErrorCode ierr; 628f86e40fSKarl Rupp 638f86e40fSKarl Rupp PetscFunctionBegin; 648f86e40fSKarl Rupp ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 658f86e40fSKarl Rupp PetscFunctionReturn(0); 668f86e40fSKarl Rupp } 678f86e40fSKarl Rupp 688f86e40fSKarl Rupp #undef __FUNCT__ 698f86e40fSKarl Rupp #define __FUNCT__ "MatCreate_MPIAIJViennaCL" 708f86e40fSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJViennaCL(Mat A) 718f86e40fSKarl Rupp { 728f86e40fSKarl Rupp PetscErrorCode ierr; 738f86e40fSKarl Rupp 748f86e40fSKarl Rupp PetscFunctionBegin; 758f86e40fSKarl Rupp ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 76ab6435e1SKarl Rupp ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJViennaCL);CHKERRQ(ierr); 778f86e40fSKarl Rupp A->ops->getvecs = MatGetVecs_MPIAIJViennaCL; 788f86e40fSKarl Rupp 798f86e40fSKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)A,MATMPIAIJVIENNACL);CHKERRQ(ierr); 808f86e40fSKarl Rupp PetscFunctionReturn(0); 818f86e40fSKarl Rupp } 828f86e40fSKarl Rupp 838f86e40fSKarl Rupp 848f86e40fSKarl Rupp /*@ 858f86e40fSKarl Rupp MatCreateAIJViennaCL - Creates a sparse matrix in AIJ (compressed row) format 86023073b3SKarl Rupp (the default parallel PETSc format). This matrix will ultimately be pushed down 878f86e40fSKarl Rupp to GPUs and use the ViennaCL library for calculations. For good matrix 888f86e40fSKarl Rupp assembly performance the user should preallocate the matrix storage by setting 898f86e40fSKarl Rupp the parameter nz (or the array nnz). By setting these parameters accurately, 908f86e40fSKarl Rupp performance during matrix assembly can be increased substantially. 918f86e40fSKarl Rupp 928f86e40fSKarl Rupp 938f86e40fSKarl Rupp Collective on MPI_Comm 948f86e40fSKarl Rupp 958f86e40fSKarl Rupp Input Parameters: 968f86e40fSKarl Rupp + comm - MPI communicator, set to PETSC_COMM_SELF 978f86e40fSKarl Rupp . m - number of rows 988f86e40fSKarl Rupp . n - number of columns 998f86e40fSKarl Rupp . nz - number of nonzeros per row (same for all rows) 1008f86e40fSKarl Rupp - nnz - array containing the number of nonzeros in the various rows 1018f86e40fSKarl Rupp (possibly different for each row) or NULL 1028f86e40fSKarl Rupp 1038f86e40fSKarl Rupp Output Parameter: 1048f86e40fSKarl Rupp . A - the matrix 1058f86e40fSKarl Rupp 1068f86e40fSKarl Rupp It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 1078f86e40fSKarl Rupp MatXXXXSetPreallocation() paradigm instead of this routine directly. 1088f86e40fSKarl Rupp [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 1098f86e40fSKarl Rupp 1108f86e40fSKarl Rupp Notes: 1118f86e40fSKarl Rupp If nnz is given then nz is ignored 1128f86e40fSKarl Rupp 1138f86e40fSKarl Rupp The AIJ format (also called the Yale sparse matrix format or 1148f86e40fSKarl Rupp compressed row storage), is fully compatible with standard Fortran 77 1158f86e40fSKarl Rupp storage. That is, the stored row and column indices can begin at 1168f86e40fSKarl Rupp either one (as in Fortran) or zero. See the users' manual for details. 1178f86e40fSKarl Rupp 1188f86e40fSKarl Rupp Specify the preallocated storage with either nz or nnz (not both). 1198f86e40fSKarl Rupp Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1208f86e40fSKarl Rupp allocation. For large problems you MUST preallocate memory or you 1218f86e40fSKarl Rupp will get TERRIBLE performance, see the users' manual chapter on matrices. 1228f86e40fSKarl Rupp 1238f86e40fSKarl Rupp Level: intermediate 1248f86e40fSKarl Rupp 1258f86e40fSKarl Rupp .seealso: MatCreate(), MatCreateAIJ(), MatCreateAIJCUSP(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJVIENNACL, MATAIJVIENNACL 1268f86e40fSKarl Rupp @*/ 1278f86e40fSKarl Rupp #undef __FUNCT__ 1288f86e40fSKarl Rupp #define __FUNCT__ "MatCreateAIJViennaCL" 1298f86e40fSKarl Rupp PetscErrorCode MatCreateAIJViennaCL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1308f86e40fSKarl Rupp { 1318f86e40fSKarl Rupp PetscErrorCode ierr; 1328f86e40fSKarl Rupp PetscMPIInt size; 1338f86e40fSKarl Rupp 1348f86e40fSKarl Rupp PetscFunctionBegin; 1358f86e40fSKarl Rupp ierr = MatCreate(comm,A);CHKERRQ(ierr); 1368f86e40fSKarl Rupp ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1378f86e40fSKarl Rupp ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1388f86e40fSKarl Rupp if (size > 1) { 1398f86e40fSKarl Rupp ierr = MatSetType(*A,MATMPIAIJVIENNACL);CHKERRQ(ierr); 1408f86e40fSKarl Rupp ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1418f86e40fSKarl Rupp } else { 1428f86e40fSKarl Rupp ierr = MatSetType(*A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 1438f86e40fSKarl Rupp ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 1448f86e40fSKarl Rupp } 1458f86e40fSKarl Rupp PetscFunctionReturn(0); 1468f86e40fSKarl Rupp } 1478f86e40fSKarl Rupp 1488f86e40fSKarl Rupp /*M 1498f86e40fSKarl Rupp MATAIJVIENNACL - MATMPIAIJVIENNACL= "aijviennacl" = "mpiaijviennacl" - A matrix type to be used for sparse matrices. 1508f86e40fSKarl Rupp 1518f86e40fSKarl Rupp A matrix type (CSR format) whose data resides on GPUs. 1528f86e40fSKarl Rupp All matrix calculations are performed using the ViennaCL library. 1538f86e40fSKarl Rupp 1548f86e40fSKarl Rupp This matrix type is identical to MATSEQAIJVIENNACL when constructed with a single process communicator, 1558f86e40fSKarl Rupp and MATMPIAIJVIENNACL otherwise. As a result, for single process communicators, 1568f86e40fSKarl Rupp MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported 1578f86e40fSKarl Rupp for communicators controlling multiple processes. It is recommended that you call both of 1588f86e40fSKarl Rupp the above preallocation routines for simplicity. 1598f86e40fSKarl Rupp 1608f86e40fSKarl Rupp Options Database Keys: 1618f86e40fSKarl Rupp + -mat_type mpiaijviennacl - sets the matrix type to "mpiaijviennacl" during a call to MatSetFromOptions() 1628f86e40fSKarl Rupp 1638f86e40fSKarl Rupp Level: beginner 1648f86e40fSKarl Rupp 1658f86e40fSKarl Rupp .seealso: MatCreateAIJViennaCL(), MATSEQAIJVIENNACL, MatCreateSeqAIJVIENNACL() 1668f86e40fSKarl Rupp M*/ 1678f86e40fSKarl Rupp 168