1aaa7dc30SBarry Smith #include <petscconf.h> 28f86e40fSKarl Rupp #include <../src/mat/impls/aij/mpi/mpiaij.h> /*I "petscmat.h" I*/ 365e3cb35SKarl Rupp #include <../src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h> 48f86e40fSKarl Rupp 58f86e40fSKarl Rupp PetscErrorCode MatMPIAIJSetPreallocation_MPIAIJViennaCL(Mat B,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 68f86e40fSKarl Rupp { 78f86e40fSKarl Rupp Mat_MPIAIJ *b = (Mat_MPIAIJ*)B->data; 88f86e40fSKarl Rupp PetscErrorCode ierr; 98f86e40fSKarl Rupp 108f86e40fSKarl Rupp PetscFunctionBegin; 118f86e40fSKarl Rupp ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 128f86e40fSKarl Rupp ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 138f86e40fSKarl Rupp if (!B->preallocated) { 148f86e40fSKarl Rupp /* Explicitly create the two MATSEQAIJVIENNACL matrices. */ 158f86e40fSKarl Rupp ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 168f86e40fSKarl Rupp ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 178f86e40fSKarl Rupp ierr = MatSetType(b->A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 18f7daeb2aSKarl Rupp ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 198f86e40fSKarl Rupp ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 208f86e40fSKarl Rupp ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 218f86e40fSKarl Rupp ierr = MatSetType(b->B,MATSEQAIJVIENNACL);CHKERRQ(ierr); 22f7daeb2aSKarl Rupp ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 238f86e40fSKarl Rupp } 248f86e40fSKarl Rupp ierr = MatSeqAIJSetPreallocation(b->A,d_nz,d_nnz);CHKERRQ(ierr); 258f86e40fSKarl Rupp ierr = MatSeqAIJSetPreallocation(b->B,o_nz,o_nnz);CHKERRQ(ierr); 268f86e40fSKarl Rupp B->preallocated = PETSC_TRUE; 278f86e40fSKarl Rupp PetscFunctionReturn(0); 288f86e40fSKarl Rupp } 298f86e40fSKarl Rupp 3074fd8ad3SBarry Smith PetscErrorCode MatAssemblyEnd_MPIAIJViennaCL(Mat A,MatAssemblyType mode) 3174fd8ad3SBarry Smith { 3274fd8ad3SBarry Smith Mat_MPIAIJ *b = (Mat_MPIAIJ*)A->data; 3374fd8ad3SBarry Smith PetscErrorCode ierr; 3474fd8ad3SBarry Smith PetscBool v; 3574fd8ad3SBarry Smith 3674fd8ad3SBarry Smith PetscFunctionBegin; 3774fd8ad3SBarry Smith ierr = MatAssemblyEnd_MPIAIJ(A,mode);CHKERRQ(ierr); 3874fd8ad3SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)b->lvec,VECSEQVIENNACL,&v);CHKERRQ(ierr); 3974fd8ad3SBarry Smith if (!v) { 4074fd8ad3SBarry Smith PetscInt m; 4174fd8ad3SBarry Smith ierr = VecGetSize(b->lvec,&m);CHKERRQ(ierr); 4274fd8ad3SBarry Smith ierr = VecDestroy(&b->lvec);CHKERRQ(ierr); 4374fd8ad3SBarry Smith ierr = VecCreateSeqViennaCL(PETSC_COMM_SELF,m,&b->lvec);CHKERRQ(ierr); 4474fd8ad3SBarry Smith } 4574fd8ad3SBarry Smith PetscFunctionReturn(0); 4674fd8ad3SBarry Smith } 478f86e40fSKarl Rupp 488f86e40fSKarl Rupp PetscErrorCode MatDestroy_MPIAIJViennaCL(Mat A) 498f86e40fSKarl Rupp { 508f86e40fSKarl Rupp PetscErrorCode ierr; 518f86e40fSKarl Rupp 528f86e40fSKarl Rupp PetscFunctionBegin; 538f86e40fSKarl Rupp ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 548f86e40fSKarl Rupp PetscFunctionReturn(0); 558f86e40fSKarl Rupp } 568f86e40fSKarl Rupp 578f86e40fSKarl Rupp PETSC_EXTERN PetscErrorCode MatCreate_MPIAIJViennaCL(Mat A) 588f86e40fSKarl Rupp { 598f86e40fSKarl Rupp PetscErrorCode ierr; 608f86e40fSKarl Rupp 618f86e40fSKarl Rupp PetscFunctionBegin; 628f86e40fSKarl Rupp ierr = MatCreate_MPIAIJ(A);CHKERRQ(ierr); 6334136279SStefano Zampini ierr = PetscFree(A->defaultvectype);CHKERRQ(ierr); 6434136279SStefano Zampini ierr = PetscStrallocpy(VECVIENNACL,&A->defaultvectype);CHKERRQ(ierr); 65ab6435e1SKarl Rupp ierr = PetscObjectComposeFunction((PetscObject)A,"MatMPIAIJSetPreallocation_C",MatMPIAIJSetPreallocation_MPIAIJViennaCL);CHKERRQ(ierr); 6674fd8ad3SBarry Smith A->ops->assemblyend = MatAssemblyEnd_MPIAIJViennaCL; 678f86e40fSKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)A,MATMPIAIJVIENNACL);CHKERRQ(ierr); 688f86e40fSKarl Rupp PetscFunctionReturn(0); 698f86e40fSKarl Rupp } 708f86e40fSKarl Rupp 718f86e40fSKarl Rupp 728f86e40fSKarl Rupp /*@ 738f86e40fSKarl Rupp MatCreateAIJViennaCL - Creates a sparse matrix in AIJ (compressed row) format 74023073b3SKarl Rupp (the default parallel PETSc format). This matrix will ultimately be pushed down 758f86e40fSKarl Rupp to GPUs and use the ViennaCL library for calculations. For good matrix 768f86e40fSKarl Rupp assembly performance the user should preallocate the matrix storage by setting 778f86e40fSKarl Rupp the parameter nz (or the array nnz). By setting these parameters accurately, 788f86e40fSKarl Rupp performance during matrix assembly can be increased substantially. 798f86e40fSKarl Rupp 808f86e40fSKarl Rupp 81*d083f849SBarry Smith Collective 828f86e40fSKarl Rupp 838f86e40fSKarl Rupp Input Parameters: 848f86e40fSKarl Rupp + comm - MPI communicator, set to PETSC_COMM_SELF 858f86e40fSKarl Rupp . m - number of rows 868f86e40fSKarl Rupp . n - number of columns 878f86e40fSKarl Rupp . nz - number of nonzeros per row (same for all rows) 888f86e40fSKarl Rupp - nnz - array containing the number of nonzeros in the various rows 898f86e40fSKarl Rupp (possibly different for each row) or NULL 908f86e40fSKarl Rupp 918f86e40fSKarl Rupp Output Parameter: 928f86e40fSKarl Rupp . A - the matrix 938f86e40fSKarl Rupp 948f86e40fSKarl Rupp It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 958f86e40fSKarl Rupp MatXXXXSetPreallocation() paradigm instead of this routine directly. 968f86e40fSKarl Rupp [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 978f86e40fSKarl Rupp 988f86e40fSKarl Rupp Notes: 998f86e40fSKarl Rupp If nnz is given then nz is ignored 1008f86e40fSKarl Rupp 1018f86e40fSKarl Rupp The AIJ format (also called the Yale sparse matrix format or 1028f86e40fSKarl Rupp compressed row storage), is fully compatible with standard Fortran 77 1038f86e40fSKarl Rupp storage. That is, the stored row and column indices can begin at 1048f86e40fSKarl Rupp either one (as in Fortran) or zero. See the users' manual for details. 1058f86e40fSKarl Rupp 1068f86e40fSKarl Rupp Specify the preallocated storage with either nz or nnz (not both). 1078f86e40fSKarl Rupp Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 1088f86e40fSKarl Rupp allocation. For large problems you MUST preallocate memory or you 1098f86e40fSKarl Rupp will get TERRIBLE performance, see the users' manual chapter on matrices. 1108f86e40fSKarl Rupp 1118f86e40fSKarl Rupp Level: intermediate 1128f86e40fSKarl Rupp 113e9e886b6SKarl Rupp .seealso: MatCreate(), MatCreateAIJ(), MatCreateAIJCUSPARSE(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ(), MATMPIAIJVIENNACL, MATAIJVIENNACL 1148f86e40fSKarl Rupp @*/ 1158f86e40fSKarl Rupp PetscErrorCode MatCreateAIJViennaCL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 1168f86e40fSKarl Rupp { 1178f86e40fSKarl Rupp PetscErrorCode ierr; 1188f86e40fSKarl Rupp PetscMPIInt size; 1198f86e40fSKarl Rupp 1208f86e40fSKarl Rupp PetscFunctionBegin; 1218f86e40fSKarl Rupp ierr = MatCreate(comm,A);CHKERRQ(ierr); 1228f86e40fSKarl Rupp ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 1238f86e40fSKarl Rupp ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 1248f86e40fSKarl Rupp if (size > 1) { 1258f86e40fSKarl Rupp ierr = MatSetType(*A,MATMPIAIJVIENNACL);CHKERRQ(ierr); 1268f86e40fSKarl Rupp ierr = MatMPIAIJSetPreallocation(*A,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 1278f86e40fSKarl Rupp } else { 1288f86e40fSKarl Rupp ierr = MatSetType(*A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 1298f86e40fSKarl Rupp ierr = MatSeqAIJSetPreallocation(*A,d_nz,d_nnz);CHKERRQ(ierr); 1308f86e40fSKarl Rupp } 1318f86e40fSKarl Rupp PetscFunctionReturn(0); 1328f86e40fSKarl Rupp } 1338f86e40fSKarl Rupp 1343ca39a21SBarry Smith /*MC 1358f86e40fSKarl Rupp MATAIJVIENNACL - MATMPIAIJVIENNACL= "aijviennacl" = "mpiaijviennacl" - A matrix type to be used for sparse matrices. 1368f86e40fSKarl Rupp 1378f86e40fSKarl Rupp A matrix type (CSR format) whose data resides on GPUs. 1388f86e40fSKarl Rupp All matrix calculations are performed using the ViennaCL library. 1398f86e40fSKarl Rupp 1408f86e40fSKarl Rupp This matrix type is identical to MATSEQAIJVIENNACL when constructed with a single process communicator, 1418f86e40fSKarl Rupp and MATMPIAIJVIENNACL otherwise. As a result, for single process communicators, 1428f86e40fSKarl Rupp MatSeqAIJSetPreallocation is supported, and similarly MatMPIAIJSetPreallocation is supported 1438f86e40fSKarl Rupp for communicators controlling multiple processes. It is recommended that you call both of 1448f86e40fSKarl Rupp the above preallocation routines for simplicity. 1458f86e40fSKarl Rupp 1468f86e40fSKarl Rupp Options Database Keys: 1478f86e40fSKarl Rupp + -mat_type mpiaijviennacl - sets the matrix type to "mpiaijviennacl" during a call to MatSetFromOptions() 1488f86e40fSKarl Rupp 1498f86e40fSKarl Rupp Level: beginner 1508f86e40fSKarl Rupp 1518f86e40fSKarl Rupp .seealso: MatCreateAIJViennaCL(), MATSEQAIJVIENNACL, MatCreateSeqAIJVIENNACL() 1528f86e40fSKarl Rupp M*/ 153