1 2 /* 3 Provides an interface to the SuperLU_DIST_2.2 sparse solver 4 */ 5 6 #include <../src/mat/impls/aij/seq/aij.h> 7 #include <../src/mat/impls/aij/mpi/mpiaij.h> 8 #if defined(PETSC_HAVE_STDLIB_H) /* This is to get around weird problem with SuperLU on cray */ 9 #include <stdlib.h> 10 #endif 11 12 #if defined(PETSC_USE_64BIT_INDICES) 13 /* ugly SuperLU_Dist variable telling it to use long long int */ 14 #define _LONGINT 15 #endif 16 17 EXTERN_C_BEGIN 18 #if defined(PETSC_USE_COMPLEX) 19 #include <superlu_zdefs.h> 20 #else 21 #include <superlu_ddefs.h> 22 #endif 23 EXTERN_C_END 24 25 /* 26 GLOBAL - The sparse matrix and right hand side are all stored initially on process 0. Should be called centralized 27 DISTRIBUTED - The sparse matrix and right hand size are initially stored across the entire MPI communicator. 28 */ 29 typedef enum {GLOBAL,DISTRIBUTED} SuperLU_MatInputMode; 30 const char *SuperLU_MatInputModes[] = {"GLOBAL","DISTRIBUTED","SuperLU_MatInputMode","PETSC_",0}; 31 32 typedef struct { 33 int_t nprow,npcol,*row,*col; 34 gridinfo_t grid; 35 superlu_dist_options_t options; 36 SuperMatrix A_sup; 37 ScalePermstruct_t ScalePermstruct; 38 LUstruct_t LUstruct; 39 int StatPrint; 40 SuperLU_MatInputMode MatInputMode; 41 SOLVEstruct_t SOLVEstruct; 42 fact_t FactPattern; 43 MPI_Comm comm_superlu; 44 #if defined(PETSC_USE_COMPLEX) 45 doublecomplex *val; 46 #else 47 double *val; 48 #endif 49 PetscBool matsolve_iscalled,matmatsolve_iscalled; 50 PetscBool CleanUpSuperLU_Dist; /* Flag to clean up (non-global) SuperLU objects during Destroy */ 51 } Mat_SuperLU_DIST; 52 53 54 #undef __FUNCT__ 55 #define __FUNCT__ "MatSuperluDistGetDiagU_SuperLU_DIST" 56 PetscErrorCode MatSuperluDistGetDiagU_SuperLU_DIST(Mat F,PetscScalar *diagU) 57 { 58 Mat_SuperLU_DIST *lu= (Mat_SuperLU_DIST*)F->spptr; 59 60 PetscFunctionBegin; 61 #if defined(PETSC_USE_COMPLEX) 62 PetscStackCall("SuperLU_DIST:pzGetDiagU",pdGetDiagU(F->rmap->N,&lu->LUstruct,&lu->grid,diagU)); 63 #else 64 PetscStackCall("SuperLU_DIST:pdGetDiagU",pdGetDiagU(F->rmap->N,&lu->LUstruct,&lu->grid,diagU)); 65 #endif 66 PetscFunctionReturn(0); 67 } 68 69 #undef __FUNCT__ 70 #define __FUNCT__ "MatSuperluDistGetDiagU" 71 PetscErrorCode MatSuperluDistGetDiagU(Mat F,PetscScalar *diagU) 72 { 73 PetscErrorCode ierr; 74 75 PetscFunctionBegin; 76 PetscValidHeaderSpecific(F,MAT_CLASSID,1); 77 ierr = PetscTryMethod(F,"MatSuperluDistGetDiagU_C",(Mat,PetscScalar*),(F,diagU));CHKERRQ(ierr); 78 #undef __FUNCT__ 79 #define __FUNCT__ "MatDestroy_SuperLU_DIST" 80 static PetscErrorCode MatDestroy_SuperLU_DIST(Mat A) 81 { 82 PetscErrorCode ierr; 83 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->data; 84 85 PetscFunctionBegin; 86 if (lu->CleanUpSuperLU_Dist) { 87 /* Deallocate SuperLU_DIST storage */ 88 if (lu->MatInputMode == GLOBAL) { 89 PetscStackCall("SuperLU_DIST:Destroy_CompCol_Matrix_dist",Destroy_CompCol_Matrix_dist(&lu->A_sup)); 90 } else { 91 PetscStackCall("SuperLU_DIST:Destroy_CompRowLoc_Matrix_dist",Destroy_CompRowLoc_Matrix_dist(&lu->A_sup)); 92 if (lu->options.SolveInitialized) { 93 #if defined(PETSC_USE_COMPLEX) 94 PetscStackCall("SuperLU_DIST:zSolveFinalize",zSolveFinalize(&lu->options, &lu->SOLVEstruct)); 95 #else 96 PetscStackCall("SuperLU_DIST:dSolveFinalize",dSolveFinalize(&lu->options, &lu->SOLVEstruct)); 97 #endif 98 } 99 } 100 PetscStackCall("SuperLU_DIST:Destroy_LU",Destroy_LU(A->cmap->N, &lu->grid, &lu->LUstruct)); 101 PetscStackCall("SuperLU_DIST:ScalePermstructFree",ScalePermstructFree(&lu->ScalePermstruct)); 102 PetscStackCall("SuperLU_DIST:LUstructFree",LUstructFree(&lu->LUstruct)); 103 104 /* Release the SuperLU_DIST process grid. */ 105 PetscStackCall("SuperLU_DIST:superlu_gridexit",superlu_gridexit(&lu->grid)); 106 ierr = MPI_Comm_free(&(lu->comm_superlu));CHKERRQ(ierr); 107 } 108 ierr = PetscFree(A->data);CHKERRQ(ierr); 109 /* clear composed functions */ 110 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverPackage_C",NULL);CHKERRQ(ierr); 111 ierr = PetscObjectComposeFunction((PetscObject)A,"MatSuperluDistGetDiagU_C",NULL);CHKERRQ(ierr); 112 113 PetscFunctionReturn(0); 114 } 115 116 #undef __FUNCT__ 117 #define __FUNCT__ "MatSolve_SuperLU_DIST" 118 static PetscErrorCode MatSolve_SuperLU_DIST(Mat A,Vec b_mpi,Vec x) 119 { 120 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->data; 121 PetscErrorCode ierr; 122 PetscMPIInt size; 123 PetscInt m=A->rmap->n,M=A->rmap->N,N=A->cmap->N; 124 SuperLUStat_t stat; 125 double berr[1]; 126 PetscScalar *bptr; 127 PetscInt nrhs=1; 128 Vec x_seq; 129 IS iden; 130 VecScatter scat; 131 int info; /* SuperLU_Dist info code is ALWAYS an int, even with long long indices */ 132 static PetscBool cite = PETSC_FALSE; 133 134 PetscFunctionBegin; 135 ierr = PetscCitationsRegister("@article{lidemmel03,\n author = {Xiaoye S. Li and James W. Demmel},\n title = {{SuperLU_DIST}: A Scalable Distributed-Memory Sparse Direct\n Solver for Unsymmetric Linear Systems},\n journal = {ACM Trans. Mathematical Software},\n volume = {29},\n number = {2},\n pages = {110-140},\n year = 2003\n}\n",&cite);CHKERRQ(ierr); 136 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 137 if (size > 1 && lu->MatInputMode == GLOBAL) { 138 /* global mat input, convert b to x_seq */ 139 ierr = VecCreateSeq(PETSC_COMM_SELF,N,&x_seq);CHKERRQ(ierr); 140 ierr = ISCreateStride(PETSC_COMM_SELF,N,0,1,&iden);CHKERRQ(ierr); 141 ierr = VecScatterCreate(b_mpi,iden,x_seq,iden,&scat);CHKERRQ(ierr); 142 ierr = ISDestroy(&iden);CHKERRQ(ierr); 143 144 ierr = VecScatterBegin(scat,b_mpi,x_seq,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 145 ierr = VecScatterEnd(scat,b_mpi,x_seq,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 146 ierr = VecGetArray(x_seq,&bptr);CHKERRQ(ierr); 147 } else { /* size==1 || distributed mat input */ 148 if (lu->options.SolveInitialized && !lu->matsolve_iscalled) { 149 /* see comments in MatMatSolve() */ 150 #if defined(PETSC_USE_COMPLEX) 151 PetscStackCall("SuperLU_DIST:zSolveFinalize",zSolveFinalize(&lu->options, &lu->SOLVEstruct)); 152 #else 153 PetscStackCall("SuperLU_DIST:dSolveFinalize",dSolveFinalize(&lu->options, &lu->SOLVEstruct)); 154 #endif 155 lu->options.SolveInitialized = NO; 156 } 157 ierr = VecCopy(b_mpi,x);CHKERRQ(ierr); 158 ierr = VecGetArray(x,&bptr);CHKERRQ(ierr); 159 } 160 161 if (lu->options.Fact != FACTORED) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"SuperLU_DIST options.Fact mush equal FACTORED"); 162 163 PetscStackCall("SuperLU_DIST:PStatInit",PStatInit(&stat)); /* Initialize the statistics variables. */ 164 if (lu->MatInputMode == GLOBAL) { 165 #if defined(PETSC_USE_COMPLEX) 166 PetscStackCall("SuperLU_DIST:pzgssvx_ABglobal",pzgssvx_ABglobal(&lu->options,&lu->A_sup,&lu->ScalePermstruct,(doublecomplex*)bptr,M,nrhs,&lu->grid,&lu->LUstruct,berr,&stat,&info)); 167 #else 168 PetscStackCall("SuperLU_DIST:pdgssvx_ABglobal",pdgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct,bptr,M,nrhs,&lu->grid,&lu->LUstruct,berr,&stat,&info)); 169 #endif 170 } else { /* distributed mat input */ 171 #if defined(PETSC_USE_COMPLEX) 172 PetscStackCall("SuperLU_DIST:pzgssvx",pzgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,(doublecomplex*)bptr,m,nrhs,&lu->grid,&lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info)); 173 #else 174 PetscStackCall("SuperLU_DIST:pdgssvx",pdgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,bptr,m,nrhs,&lu->grid,&lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info)); 175 #endif 176 } 177 if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"pdgssvx fails, info: %d\n",info); 178 179 if (lu->options.PrintStat) PStatPrint(&lu->options, &stat, &lu->grid); /* Print the statistics. */ 180 PetscStackCall("SuperLU_DIST:PStatFree",PStatFree(&stat)); 181 182 if (size > 1 && lu->MatInputMode == GLOBAL) { 183 /* convert seq x to mpi x */ 184 ierr = VecRestoreArray(x_seq,&bptr);CHKERRQ(ierr); 185 ierr = VecScatterBegin(scat,x_seq,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 186 ierr = VecScatterEnd(scat,x_seq,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 187 ierr = VecScatterDestroy(&scat);CHKERRQ(ierr); 188 ierr = VecDestroy(&x_seq);CHKERRQ(ierr); 189 } else { 190 ierr = VecRestoreArray(x,&bptr);CHKERRQ(ierr); 191 192 lu->matsolve_iscalled = PETSC_TRUE; 193 lu->matmatsolve_iscalled = PETSC_FALSE; 194 } 195 PetscFunctionReturn(0); 196 } 197 198 #undef __FUNCT__ 199 #define __FUNCT__ "MatMatSolve_SuperLU_DIST" 200 static PetscErrorCode MatMatSolve_SuperLU_DIST(Mat A,Mat B_mpi,Mat X) 201 { 202 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->data; 203 PetscErrorCode ierr; 204 PetscMPIInt size; 205 PetscInt M=A->rmap->N,m=A->rmap->n,nrhs; 206 SuperLUStat_t stat; 207 double berr[1]; 208 PetscScalar *bptr; 209 int info; /* SuperLU_Dist info code is ALWAYS an int, even with long long indices */ 210 PetscBool flg; 211 212 PetscFunctionBegin; 213 if (lu->options.Fact != FACTORED) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"SuperLU_DIST options.Fact mush equal FACTORED"); 214 ierr = PetscObjectTypeCompareAny((PetscObject)B_mpi,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr); 215 if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix B must be MATDENSE matrix"); 216 ierr = PetscObjectTypeCompareAny((PetscObject)X,&flg,MATSEQDENSE,MATMPIDENSE,NULL);CHKERRQ(ierr); 217 if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix X must be MATDENSE matrix"); 218 219 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 220 if (size > 1 && lu->MatInputMode == GLOBAL) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatInputMode=GLOBAL for nproc %d>1 is not supported",size); 221 /* size==1 or distributed mat input */ 222 if (lu->options.SolveInitialized && !lu->matmatsolve_iscalled) { 223 /* communication pattern of SOLVEstruct is unlikely created for matmatsolve, 224 thus destroy it and create a new SOLVEstruct. 225 Otherwise it may result in memory corruption or incorrect solution 226 See src/mat/examples/tests/ex125.c */ 227 #if defined(PETSC_USE_COMPLEX) 228 PetscStackCall("SuperLU_DIST:zSolveFinalize",zSolveFinalize(&lu->options, &lu->SOLVEstruct)); 229 #else 230 PetscStackCall("SuperLU_DIST:dSolveFinalize",dSolveFinalize(&lu->options, &lu->SOLVEstruct)); 231 #endif 232 lu->options.SolveInitialized = NO; 233 } 234 ierr = MatCopy(B_mpi,X,SAME_NONZERO_PATTERN);CHKERRQ(ierr); 235 236 ierr = MatGetSize(B_mpi,NULL,&nrhs);CHKERRQ(ierr); 237 238 PetscStackCall("SuperLU_DIST:PStatInit",PStatInit(&stat)); /* Initialize the statistics variables. */ 239 ierr = MatDenseGetArray(X,&bptr);CHKERRQ(ierr); 240 if (lu->MatInputMode == GLOBAL) { /* size == 1 */ 241 #if defined(PETSC_USE_COMPLEX) 242 PetscStackCall("SuperLU_DIST:pzgssvx_ABglobal",pzgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct,(doublecomplex*)bptr, M, nrhs,&lu->grid, &lu->LUstruct, berr, &stat, &info)); 243 #else 244 PetscStackCall("SuperLU_DIST:pdgssvx_ABglobal",pdgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct,bptr, M, nrhs, &lu->grid, &lu->LUstruct, berr, &stat, &info)); 245 #endif 246 } else { /* distributed mat input */ 247 #if defined(PETSC_USE_COMPLEX) 248 PetscStackCall("SuperLU_DIST:pzgssvx",pzgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,(doublecomplex*)bptr,m,nrhs,&lu->grid, &lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info)); 249 #else 250 PetscStackCall("SuperLU_DIST:pdgssvx",pdgssvx(&lu->options,&lu->A_sup,&lu->ScalePermstruct,bptr,m,nrhs,&lu->grid,&lu->LUstruct,&lu->SOLVEstruct,berr,&stat,&info)); 251 #endif 252 } 253 if (info) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"pdgssvx fails, info: %d\n",info); 254 ierr = MatDenseRestoreArray(X,&bptr);CHKERRQ(ierr); 255 256 if (lu->options.PrintStat) PStatPrint(&lu->options, &stat, &lu->grid); /* Print the statistics. */ 257 PetscStackCall("SuperLU_DIST:PStatFree",PStatFree(&stat)); 258 lu->matsolve_iscalled = PETSC_FALSE; 259 lu->matmatsolve_iscalled = PETSC_TRUE; 260 PetscFunctionReturn(0); 261 } 262 263 264 #undef __FUNCT__ 265 #define __FUNCT__ "MatLUFactorNumeric_SuperLU_DIST" 266 static PetscErrorCode MatLUFactorNumeric_SuperLU_DIST(Mat F,Mat A,const MatFactorInfo *info) 267 { 268 Mat *tseq,A_seq = NULL; 269 Mat_SeqAIJ *aa,*bb; 270 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)(F)->data; 271 PetscErrorCode ierr; 272 PetscInt M=A->rmap->N,N=A->cmap->N,i,*ai,*aj,*bi,*bj,nz,rstart,*garray, 273 m=A->rmap->n, colA_start,j,jcol,jB,countA,countB,*bjj,*ajj; 274 int sinfo; /* SuperLU_Dist info flag is always an int even with long long indices */ 275 PetscMPIInt size; 276 SuperLUStat_t stat; 277 double *berr=0; 278 IS isrow; 279 #if defined(PETSC_USE_COMPLEX) 280 doublecomplex *av, *bv; 281 #else 282 double *av, *bv; 283 #endif 284 285 PetscFunctionBegin; 286 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 287 288 if (lu->MatInputMode == GLOBAL) { /* global mat input */ 289 if (size > 1) { /* convert mpi A to seq mat A */ 290 ierr = ISCreateStride(PETSC_COMM_SELF,M,0,1,&isrow);CHKERRQ(ierr); 291 ierr = MatGetSubMatrices(A,1,&isrow,&isrow,MAT_INITIAL_MATRIX,&tseq);CHKERRQ(ierr); 292 ierr = ISDestroy(&isrow);CHKERRQ(ierr); 293 294 A_seq = *tseq; 295 ierr = PetscFree(tseq);CHKERRQ(ierr); 296 aa = (Mat_SeqAIJ*)A_seq->data; 297 } else { 298 PetscBool flg; 299 ierr = PetscObjectTypeCompare((PetscObject)A,MATMPIAIJ,&flg);CHKERRQ(ierr); 300 if (flg) { 301 Mat_MPIAIJ *At = (Mat_MPIAIJ*)A->data; 302 A = At->A; 303 } 304 aa = (Mat_SeqAIJ*)A->data; 305 } 306 307 /* Convert Petsc NR matrix to SuperLU_DIST NC. 308 Note: memories of lu->val, col and row are allocated by CompRow_to_CompCol_dist()! */ 309 if (lu->options.Fact != DOFACT) {/* successive numeric factorization, sparsity pattern is reused. */ 310 PetscStackCall("SuperLU_DIST:Destroy_CompCol_Matrix_dist",Destroy_CompCol_Matrix_dist(&lu->A_sup)); 311 if (lu->FactPattern == SamePattern_SameRowPerm) { 312 lu->options.Fact = SamePattern_SameRowPerm; /* matrix has similar numerical values */ 313 } else { /* lu->FactPattern == SamePattern */ 314 PetscStackCall("SuperLU_DIST:Destroy_LU",Destroy_LU(N, &lu->grid, &lu->LUstruct)); 315 lu->options.Fact = SamePattern; 316 } 317 } 318 #if defined(PETSC_USE_COMPLEX) 319 PetscStackCall("SuperLU_DIST:zCompRow_to_CompCol_dist",zCompRow_to_CompCol_dist(M,N,aa->nz,(doublecomplex*)aa->a,(int_t*)aa->j,(int_t*)aa->i,&lu->val,&lu->col, &lu->row)); 320 #else 321 PetscStackCall("SuperLU_DIST:dCompRow_to_CompCol_dist",dCompRow_to_CompCol_dist(M,N,aa->nz,aa->a,(int_t*)aa->j,(int_t*)aa->i,&lu->val, &lu->col, &lu->row)); 322 #endif 323 324 /* Create compressed column matrix A_sup. */ 325 #if defined(PETSC_USE_COMPLEX) 326 PetscStackCall("SuperLU_DIST:zCreate_CompCol_Matrix_dist",zCreate_CompCol_Matrix_dist(&lu->A_sup, M, N, aa->nz, lu->val, lu->col, lu->row, SLU_NC, SLU_Z, SLU_GE)); 327 #else 328 PetscStackCall("SuperLU_DIST:dCreate_CompCol_Matrix_dist",dCreate_CompCol_Matrix_dist(&lu->A_sup, M, N, aa->nz, lu->val, lu->col, lu->row, SLU_NC, SLU_D, SLU_GE)); 329 #endif 330 } else { /* distributed mat input */ 331 Mat_MPIAIJ *mat = (Mat_MPIAIJ*)A->data; 332 aa=(Mat_SeqAIJ*)(mat->A)->data; 333 bb=(Mat_SeqAIJ*)(mat->B)->data; 334 ai=aa->i; aj=aa->j; 335 bi=bb->i; bj=bb->j; 336 #if defined(PETSC_USE_COMPLEX) 337 av=(doublecomplex*)aa->a; 338 bv=(doublecomplex*)bb->a; 339 #else 340 av=aa->a; 341 bv=bb->a; 342 #endif 343 rstart = A->rmap->rstart; 344 nz = aa->nz + bb->nz; 345 garray = mat->garray; 346 347 if (lu->options.Fact == DOFACT) { /* first numeric factorization */ 348 #if defined(PETSC_USE_COMPLEX) 349 PetscStackCall("SuperLU_DIST:zallocateA_dist",zallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row)); 350 #else 351 PetscStackCall("SuperLU_DIST:dallocateA_dist",dallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row)); 352 #endif 353 } else { /* successive numeric factorization, sparsity pattern and perm_c are reused. */ 354 SUPERLU_FREE((void*)lu->A_sup.Store); 355 if (lu->FactPattern == SamePattern_SameRowPerm) { 356 lu->options.Fact = SamePattern_SameRowPerm; /* matrix has similar numerical values */ 357 } else { 358 PetscStackCall("SuperLU_DIST:Destroy_LU",Destroy_LU(N, &lu->grid, &lu->LUstruct)); /* Deallocate storage associated with the L and U matrices. */ 359 lu->options.Fact = SamePattern; 360 } 361 } 362 nz = 0; 363 for (i=0; i<m; i++) { 364 lu->row[i] = nz; 365 countA = ai[i+1] - ai[i]; 366 countB = bi[i+1] - bi[i]; 367 if (aj) { 368 ajj = aj + ai[i]; /* ptr to the beginning of this row */ 369 } else { 370 ajj = NULL; 371 } 372 bjj = bj + bi[i]; 373 374 /* B part, smaller col index */ 375 if (aj) { 376 colA_start = rstart + ajj[0]; /* the smallest global col index of A */ 377 } else { /* superlu_dist does not require matrix has diagonal entries, thus aj=NULL would work */ 378 colA_start = rstart; 379 } 380 jB = 0; 381 for (j=0; j<countB; j++) { 382 jcol = garray[bjj[j]]; 383 if (jcol > colA_start) { 384 jB = j; 385 break; 386 } 387 lu->col[nz] = jcol; 388 lu->val[nz++] = *bv++; 389 if (j==countB-1) jB = countB; 390 } 391 392 /* A part */ 393 for (j=0; j<countA; j++) { 394 lu->col[nz] = rstart + ajj[j]; 395 lu->val[nz++] = *av++; 396 } 397 398 /* B part, larger col index */ 399 for (j=jB; j<countB; j++) { 400 lu->col[nz] = garray[bjj[j]]; 401 lu->val[nz++] = *bv++; 402 } 403 } 404 lu->row[m] = nz; 405 #if defined(PETSC_USE_COMPLEX) 406 PetscStackCall("SuperLU_DIST:zCreate_CompRowLoc_Matrix_dist",zCreate_CompRowLoc_Matrix_dist(&lu->A_sup, M, N, nz, m, rstart,lu->val, lu->col, lu->row, SLU_NR_loc, SLU_Z, SLU_GE)); 407 #else 408 PetscStackCall("SuperLU_DIST:dCreate_CompRowLoc_Matrix_dist",dCreate_CompRowLoc_Matrix_dist(&lu->A_sup, M, N, nz, m, rstart,lu->val, lu->col, lu->row, SLU_NR_loc, SLU_D, SLU_GE)); 409 #endif 410 } 411 412 /* Factor the matrix. */ 413 PetscStackCall("SuperLU_DIST:PStatInit",PStatInit(&stat)); /* Initialize the statistics variables. */ 414 if (lu->MatInputMode == GLOBAL) { /* global mat input */ 415 #if defined(PETSC_USE_COMPLEX) 416 PetscStackCall("SuperLU_DIST:pzgssvx_ABglobal",pzgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, M, 0,&lu->grid, &lu->LUstruct, berr, &stat, &sinfo)); 417 #else 418 PetscStackCall("SuperLU_DIST:pdgssvx_ABglobal",pdgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, M, 0,&lu->grid, &lu->LUstruct, berr, &stat, &sinfo)); 419 #endif 420 } else { /* distributed mat input */ 421 #if defined(PETSC_USE_COMPLEX) 422 PetscStackCall("SuperLU_DIST:pzgssvx",pzgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, m, 0, &lu->grid,&lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &sinfo)); 423 #else 424 PetscStackCall("SuperLU_DIST:pdgssvx",pdgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, m, 0, &lu->grid,&lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &sinfo)); 425 #endif 426 } 427 428 if (sinfo > 0) { 429 if (A->erroriffailure) { 430 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot in row %D",sinfo); 431 } else { 432 if (sinfo <= lu->A_sup.ncol) { 433 F->errortype = MAT_FACTOR_NUMERIC_ZEROPIVOT; 434 ierr = PetscInfo1(F,"U(i,i) is exactly zero, i= %D\n",sinfo);CHKERRQ(ierr); 435 } else if (sinfo > lu->A_sup.ncol) { 436 /* 437 number of bytes allocated when memory allocation 438 failure occurred, plus A->ncol. 439 */ 440 F->errortype = MAT_FACTOR_OUTMEMORY; 441 ierr = PetscInfo1(F,"Number of bytes allocated when memory allocation fails %D\n",sinfo);CHKERRQ(ierr); 442 } 443 } 444 } else if (sinfo < 0) { 445 SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB, "info = %D, argument in p*gssvx() had an illegal value", sinfo); 446 } 447 448 if (lu->MatInputMode == GLOBAL && size > 1) { 449 ierr = MatDestroy(&A_seq);CHKERRQ(ierr); 450 } 451 452 if (lu->options.PrintStat) { 453 PStatPrint(&lu->options, &stat, &lu->grid); /* Print the statistics. */ 454 } 455 PStatFree(&stat); 456 (F)->assembled = PETSC_TRUE; 457 (F)->preallocated = PETSC_TRUE; 458 lu->options.Fact = FACTORED; /* The factored form of A is supplied. Local option used by this func. only */ 459 PetscFunctionReturn(0); 460 } 461 462 /* Note the Petsc r and c permutations are ignored */ 463 #undef __FUNCT__ 464 #define __FUNCT__ "MatLUFactorSymbolic_SuperLU_DIST" 465 static PetscErrorCode MatLUFactorSymbolic_SuperLU_DIST(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 466 { 467 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)F->data; 468 PetscInt M = A->rmap->N,N=A->cmap->N; 469 470 PetscFunctionBegin; 471 /* Initialize the SuperLU process grid. */ 472 PetscStackCall("SuperLU_DIST:superlu_gridinit",superlu_gridinit(lu->comm_superlu, lu->nprow, lu->npcol, &lu->grid)); 473 474 /* Initialize ScalePermstruct and LUstruct. */ 475 PetscStackCall("SuperLU_DIST:ScalePermstructInit",ScalePermstructInit(M, N, &lu->ScalePermstruct)); 476 PetscStackCall("SuperLU_DIST:LUstructInit",LUstructInit(N, &lu->LUstruct)); 477 F->ops->lufactornumeric = MatLUFactorNumeric_SuperLU_DIST; 478 F->ops->solve = MatSolve_SuperLU_DIST; 479 F->ops->matsolve = MatMatSolve_SuperLU_DIST; 480 lu->CleanUpSuperLU_Dist = PETSC_TRUE; 481 PetscFunctionReturn(0); 482 } 483 484 #undef __FUNCT__ 485 #define __FUNCT__ "MatFactorGetSolverPackage_aij_superlu_dist" 486 static PetscErrorCode MatFactorGetSolverPackage_aij_superlu_dist(Mat A,const MatSolverPackage *type) 487 { 488 PetscFunctionBegin; 489 *type = MATSOLVERSUPERLU_DIST; 490 PetscFunctionReturn(0); 491 } 492 493 #undef __FUNCT__ 494 #define __FUNCT__ "MatFactorInfo_SuperLU_DIST" 495 static PetscErrorCode MatFactorInfo_SuperLU_DIST(Mat A,PetscViewer viewer) 496 { 497 Mat_SuperLU_DIST *lu=(Mat_SuperLU_DIST*)A->data; 498 superlu_dist_options_t options; 499 PetscErrorCode ierr; 500 501 PetscFunctionBegin; 502 /* check if matrix is superlu_dist type */ 503 if (A->ops->solve != MatSolve_SuperLU_DIST) PetscFunctionReturn(0); 504 505 options = lu->options; 506 ierr = PetscViewerASCIIPrintf(viewer,"SuperLU_DIST run parameters:\n");CHKERRQ(ierr); 507 ierr = PetscViewerASCIIPrintf(viewer," Process grid nprow %D x npcol %D \n",lu->nprow,lu->npcol);CHKERRQ(ierr); 508 ierr = PetscViewerASCIIPrintf(viewer," Equilibrate matrix %s \n",PetscBools[options.Equil != NO]);CHKERRQ(ierr); 509 ierr = PetscViewerASCIIPrintf(viewer," Matrix input mode %d \n",lu->MatInputMode);CHKERRQ(ierr); 510 ierr = PetscViewerASCIIPrintf(viewer," Replace tiny pivots %s \n",PetscBools[options.ReplaceTinyPivot != NO]);CHKERRQ(ierr); 511 ierr = PetscViewerASCIIPrintf(viewer," Use iterative refinement %s \n",PetscBools[options.IterRefine == SLU_DOUBLE]);CHKERRQ(ierr); 512 ierr = PetscViewerASCIIPrintf(viewer," Processors in row %d col partition %d \n",lu->nprow,lu->npcol);CHKERRQ(ierr); 513 ierr = PetscViewerASCIIPrintf(viewer," Row permutation %s \n",(options.RowPerm == NOROWPERM) ? "NATURAL" : "LargeDiag");CHKERRQ(ierr); 514 515 switch (options.ColPerm) { 516 case NATURAL: 517 ierr = PetscViewerASCIIPrintf(viewer," Column permutation NATURAL\n");CHKERRQ(ierr); 518 break; 519 case MMD_AT_PLUS_A: 520 ierr = PetscViewerASCIIPrintf(viewer," Column permutation MMD_AT_PLUS_A\n");CHKERRQ(ierr); 521 break; 522 case MMD_ATA: 523 ierr = PetscViewerASCIIPrintf(viewer," Column permutation MMD_ATA\n");CHKERRQ(ierr); 524 break; 525 case METIS_AT_PLUS_A: 526 ierr = PetscViewerASCIIPrintf(viewer," Column permutation METIS_AT_PLUS_A\n");CHKERRQ(ierr); 527 break; 528 case PARMETIS: 529 ierr = PetscViewerASCIIPrintf(viewer," Column permutation PARMETIS\n");CHKERRQ(ierr); 530 break; 531 default: 532 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown column permutation"); 533 } 534 535 ierr = PetscViewerASCIIPrintf(viewer," Parallel symbolic factorization %s \n",PetscBools[options.ParSymbFact != NO]);CHKERRQ(ierr); 536 537 if (lu->FactPattern == SamePattern) { 538 ierr = PetscViewerASCIIPrintf(viewer," Repeated factorization SamePattern\n");CHKERRQ(ierr); 539 } else { 540 ierr = PetscViewerASCIIPrintf(viewer," Repeated factorization SamePattern_SameRowPerm\n");CHKERRQ(ierr); 541 } 542 PetscFunctionReturn(0); 543 } 544 545 #undef __FUNCT__ 546 #define __FUNCT__ "MatView_SuperLU_DIST" 547 static PetscErrorCode MatView_SuperLU_DIST(Mat A,PetscViewer viewer) 548 { 549 PetscErrorCode ierr; 550 PetscBool iascii; 551 PetscViewerFormat format; 552 553 PetscFunctionBegin; 554 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 555 if (iascii) { 556 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 557 if (format == PETSC_VIEWER_ASCII_INFO) { 558 ierr = MatFactorInfo_SuperLU_DIST(A,viewer);CHKERRQ(ierr); 559 } 560 } 561 PetscFunctionReturn(0); 562 } 563 564 #undef __FUNCT__ 565 #define __FUNCT__ "MatGetFactor_aij_superlu_dist" 566 static PetscErrorCode MatGetFactor_aij_superlu_dist(Mat A,MatFactorType ftype,Mat *F) 567 { 568 Mat B; 569 Mat_SuperLU_DIST *lu; 570 PetscErrorCode ierr; 571 PetscInt M=A->rmap->N,N=A->cmap->N,indx; 572 PetscMPIInt size; 573 superlu_dist_options_t options; 574 PetscBool flg; 575 const char *colperm[] = {"NATURAL","MMD_AT_PLUS_A","MMD_ATA","METIS_AT_PLUS_A","PARMETIS"}; 576 const char *rowperm[] = {"LargeDiag","NATURAL"}; 577 const char *factPattern[] = {"SamePattern","SamePattern_SameRowPerm"}; 578 PetscBool set; 579 580 PetscFunctionBegin; 581 /* Create the factorization matrix */ 582 ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 583 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,M,N);CHKERRQ(ierr); 584 ierr = PetscStrallocpy("superlu_dist",&((PetscObject)B)->type_name);CHKERRQ(ierr); 585 ierr = MatSetUp(B);CHKERRQ(ierr); 586 B->ops->getinfo = MatGetInfo_External; 587 B->ops->lufactorsymbolic = MatLUFactorSymbolic_SuperLU_DIST; 588 B->ops->view = MatView_SuperLU_DIST; 589 B->ops->destroy = MatDestroy_SuperLU_DIST; 590 591 B->factortype = MAT_FACTOR_LU; 592 593 /* set solvertype */ 594 ierr = PetscFree(B->solvertype);CHKERRQ(ierr); 595 ierr = PetscStrallocpy(MATSOLVERSUPERLU_DIST,&B->solvertype);CHKERRQ(ierr); 596 597 ierr = PetscNewLog(B,&lu);CHKERRQ(ierr); 598 B->data = lu; 599 600 /* Set the default input options: 601 options.Fact = DOFACT; 602 options.Equil = YES; 603 options.ParSymbFact = NO; 604 options.ColPerm = METIS_AT_PLUS_A; 605 options.RowPerm = LargeDiag; 606 options.ReplaceTinyPivot = YES; 607 options.IterRefine = DOUBLE; 608 options.Trans = NOTRANS; 609 options.SolveInitialized = NO; -hold the communication pattern used MatSolve() and MatMatSolve() 610 options.RefineInitialized = NO; 611 options.PrintStat = YES; 612 */ 613 set_default_options_dist(&options); 614 615 ierr = MPI_Comm_dup(PetscObjectComm((PetscObject)A),&(lu->comm_superlu));CHKERRQ(ierr); 616 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 617 /* Default num of process columns and rows */ 618 lu->npcol = (int_t) (0.5 + PetscSqrtReal((PetscReal)size)); 619 if (!lu->npcol) lu->npcol = 1; 620 while (lu->npcol > 0) { 621 lu->nprow = (int_t) (size/lu->npcol); 622 if (size == lu->nprow * lu->npcol) break; 623 lu->npcol--; 624 } 625 626 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"SuperLU_Dist Options","Mat");CHKERRQ(ierr); 627 ierr = PetscOptionsInt("-mat_superlu_dist_r","Number rows in processor partition","None",lu->nprow,(PetscInt*)&lu->nprow,NULL);CHKERRQ(ierr); 628 ierr = PetscOptionsInt("-mat_superlu_dist_c","Number columns in processor partition","None",lu->npcol,(PetscInt*)&lu->npcol,NULL);CHKERRQ(ierr); 629 if (size != lu->nprow * lu->npcol) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number of processes %d must equal to nprow %d * npcol %d",size,lu->nprow,lu->npcol); 630 631 lu->MatInputMode = DISTRIBUTED; 632 633 ierr = PetscOptionsEnum("-mat_superlu_dist_matinput","Matrix input mode (global or distributed)","None",SuperLU_MatInputModes,(PetscEnum)lu->MatInputMode,(PetscEnum*)&lu->MatInputMode,NULL);CHKERRQ(ierr); 634 if (lu->MatInputMode == DISTRIBUTED && size == 1) lu->MatInputMode = GLOBAL; 635 636 ierr = PetscOptionsBool("-mat_superlu_dist_equil","Equilibrate matrix","None",options.Equil ? PETSC_TRUE : PETSC_FALSE,&flg,&set);CHKERRQ(ierr); 637 if (set && !flg) options.Equil = NO; 638 639 ierr = PetscOptionsEList("-mat_superlu_dist_rowperm","Row permutation","None",rowperm,2,rowperm[0],&indx,&flg);CHKERRQ(ierr); 640 if (flg) { 641 switch (indx) { 642 case 0: 643 options.RowPerm = LargeDiag; 644 break; 645 case 1: 646 options.RowPerm = NOROWPERM; 647 break; 648 } 649 } 650 651 ierr = PetscOptionsEList("-mat_superlu_dist_colperm","Column permutation","None",colperm,5,colperm[3],&indx,&flg);CHKERRQ(ierr); 652 if (flg) { 653 switch (indx) { 654 case 0: 655 options.ColPerm = NATURAL; 656 break; 657 case 1: 658 options.ColPerm = MMD_AT_PLUS_A; 659 break; 660 case 2: 661 options.ColPerm = MMD_ATA; 662 break; 663 case 3: 664 options.ColPerm = METIS_AT_PLUS_A; 665 break; 666 case 4: 667 options.ColPerm = PARMETIS; /* only works for np>1 */ 668 break; 669 default: 670 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Unknown column permutation"); 671 } 672 } 673 674 options.ReplaceTinyPivot = NO; 675 ierr = PetscOptionsBool("-mat_superlu_dist_replacetinypivot","Replace tiny pivots","None",options.ReplaceTinyPivot ? PETSC_TRUE : PETSC_FALSE,&flg,&set);CHKERRQ(ierr); 676 if (set && flg) options.ReplaceTinyPivot = YES; 677 678 options.ParSymbFact = NO; 679 ierr = PetscOptionsBool("-mat_superlu_dist_parsymbfact","Parallel symbolic factorization","None",PETSC_FALSE,&flg,&set);CHKERRQ(ierr); 680 if (set && flg && size>1) { 681 if (lu->MatInputMode == GLOBAL) { 682 #if defined(PETSC_USE_INFO) 683 ierr = PetscInfo(A,"Warning: '-mat_superlu_dist_parsymbfact' is ignored because MatInputMode=GLOBAL\n");CHKERRQ(ierr); 684 #endif 685 } else { 686 #if defined(PETSC_HAVE_PARMETIS) 687 options.ParSymbFact = YES; 688 options.ColPerm = PARMETIS; /* in v2.2, PARMETIS is forced for ParSymbFact regardless of user ordering setting */ 689 #else 690 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"parsymbfact needs PARMETIS"); 691 #endif 692 } 693 } 694 695 lu->FactPattern = SamePattern; 696 ierr = PetscOptionsEList("-mat_superlu_dist_fact","Sparsity pattern for repeated matrix factorization","None",factPattern,2,factPattern[0],&indx,&flg);CHKERRQ(ierr); 697 if (flg) { 698 switch (indx) { 699 case 0: 700 lu->FactPattern = SamePattern; 701 break; 702 case 1: 703 lu->FactPattern = SamePattern_SameRowPerm; 704 break; 705 } 706 } 707 708 options.IterRefine = NOREFINE; 709 ierr = PetscOptionsBool("-mat_superlu_dist_iterrefine","Use iterative refinement","None",options.IterRefine == NOREFINE ? PETSC_FALSE : PETSC_TRUE ,&flg,&set);CHKERRQ(ierr); 710 if (set) { 711 if (flg) options.IterRefine = SLU_DOUBLE; 712 else options.IterRefine = NOREFINE; 713 } 714 715 if (PetscLogPrintInfo) options.PrintStat = YES; 716 else options.PrintStat = NO; 717 ierr = PetscOptionsBool("-mat_superlu_dist_statprint","Print factorization information","None",(PetscBool)options.PrintStat,(PetscBool*)&options.PrintStat,NULL);CHKERRQ(ierr); 718 ierr = PetscOptionsEnd();CHKERRQ(ierr); 719 720 lu->options = options; 721 lu->options.Fact = DOFACT; 722 lu->matsolve_iscalled = PETSC_FALSE; 723 lu->matmatsolve_iscalled = PETSC_FALSE; 724 725 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C",MatFactorGetSolverPackage_aij_superlu_dist);CHKERRQ(ierr); 726 ierr = PetscObjectComposeFunction((PetscObject)B,"MatSuperluDistGetDiagU_C",MatSuperluDistGetDiagU_SuperLU_DIST);CHKERRQ(ierr); 727 728 *F = B; 729 PetscFunctionReturn(0); 730 } 731 732 #undef __FUNCT__ 733 #define __FUNCT__ "MatSolverPackageRegister_SuperLU_DIST" 734 PETSC_EXTERN PetscErrorCode MatSolverPackageRegister_SuperLU_DIST(void) 735 { 736 PetscErrorCode ierr; 737 PetscFunctionBegin; 738 ierr = MatSolverPackageRegister(MATSOLVERSUPERLU_DIST,MATMPIAIJ, MAT_FACTOR_LU,MatGetFactor_aij_superlu_dist);CHKERRQ(ierr); 739 ierr = MatSolverPackageRegister(MATSOLVERSUPERLU_DIST,MATSEQAIJ, MAT_FACTOR_LU,MatGetFactor_aij_superlu_dist);CHKERRQ(ierr); 740 PetscFunctionReturn(0); 741 } 742 743 /*MC 744 MATSOLVERSUPERLU_DIST - Parallel direct solver package for LU factorization 745 746 Use ./configure --download-superlu_dist --download-parmetis --download-metis --download-ptscotch to have PETSc installed with SuperLU_DIST 747 748 Use -pc_type lu -pc_factor_mat_solver_package superlu_dist to us this direct solver 749 750 Works with AIJ matrices 751 752 Options Database Keys: 753 + -mat_superlu_dist_r <n> - number of rows in processor partition 754 . -mat_superlu_dist_c <n> - number of columns in processor partition 755 . -mat_superlu_dist_matinput <0,1> - matrix input mode; 0=global, 1=distributed 756 . -mat_superlu_dist_equil - equilibrate the matrix 757 . -mat_superlu_dist_rowperm <LargeDiag,NATURAL> - row permutation 758 . -mat_superlu_dist_colperm <MMD_AT_PLUS_A,MMD_ATA,NATURAL> - column permutation 759 . -mat_superlu_dist_replacetinypivot - replace tiny pivots 760 . -mat_superlu_dist_fact <SamePattern> - (choose one of) SamePattern SamePattern_SameRowPerm 761 . -mat_superlu_dist_iterrefine - use iterative refinement 762 - -mat_superlu_dist_statprint - print factorization information 763 764 Level: beginner 765 766 .seealso: PCLU 767 768 .seealso: PCFactorSetMatSolverPackage(), MatSolverPackage 769 770 M*/ 771 772