1 #define PETSCMAT_DLL 2 3 /* 4 Provides an interface to the SuperLU_DIST_2.2 sparse solver 5 */ 6 7 #include "../src/mat/impls/aij/seq/aij.h" 8 #include "../src/mat/impls/aij/mpi/mpiaij.h" 9 #if defined(PETSC_HAVE_STDLIB_H) /* This is to get around weird problem with SuperLU on cray */ 10 #include "stdlib.h" 11 #endif 12 13 #if defined(PETSC_USE_64BIT_INDICES) 14 /* ugly SuperLU_Dist variable telling it to use long long int */ 15 #define _LONGINT 16 #endif 17 18 EXTERN_C_BEGIN 19 #if defined(PETSC_USE_COMPLEX) 20 #include "superlu_zdefs.h" 21 #else 22 #include "superlu_ddefs.h" 23 #endif 24 EXTERN_C_END 25 26 typedef enum {GLOBAL,DISTRIBUTED} SuperLU_MatInputMode; 27 const char *SuperLU_MatInputModes[] = {"GLOBAL","DISTRIBUTED","SuperLU_MatInputMode","PETSC_",0}; 28 29 typedef struct { 30 int_t nprow,npcol,*row,*col; 31 gridinfo_t grid; 32 superlu_options_t options; 33 SuperMatrix A_sup; 34 ScalePermstruct_t ScalePermstruct; 35 LUstruct_t LUstruct; 36 int StatPrint; 37 SuperLU_MatInputMode MatInputMode; 38 SOLVEstruct_t SOLVEstruct; 39 fact_t FactPattern; 40 MPI_Comm comm_superlu; 41 #if defined(PETSC_USE_COMPLEX) 42 doublecomplex *val; 43 #else 44 double *val; 45 #endif 46 47 /* Flag to clean up (non-global) SuperLU objects during Destroy */ 48 PetscTruth CleanUpSuperLU_Dist; 49 } Mat_SuperLU_DIST; 50 51 extern PetscErrorCode MatFactorInfo_SuperLU_DIST(Mat,PetscViewer); 52 extern PetscErrorCode MatLUFactorNumeric_SuperLU_DIST(Mat,Mat,const MatFactorInfo *); 53 extern PetscErrorCode MatDestroy_SuperLU_DIST(Mat); 54 extern PetscErrorCode MatView_SuperLU_DIST(Mat,PetscViewer); 55 extern PetscErrorCode MatSolve_SuperLU_DIST(Mat,Vec,Vec); 56 extern PetscErrorCode MatLUFactorSymbolic_SuperLU_DIST(Mat,Mat,IS,IS,const MatFactorInfo *); 57 extern PetscErrorCode MatDestroy_MPIAIJ(Mat); 58 59 #undef __FUNCT__ 60 #define __FUNCT__ "MatDestroy_SuperLU_DIST" 61 PetscErrorCode MatDestroy_SuperLU_DIST(Mat A) 62 { 63 PetscErrorCode ierr; 64 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->spptr; 65 66 PetscFunctionBegin; 67 if (lu->CleanUpSuperLU_Dist) { 68 /* Deallocate SuperLU_DIST storage */ 69 if (lu->MatInputMode == GLOBAL) { 70 Destroy_CompCol_Matrix_dist(&lu->A_sup); 71 } else { 72 Destroy_CompRowLoc_Matrix_dist(&lu->A_sup); 73 if ( lu->options.SolveInitialized ) { 74 #if defined(PETSC_USE_COMPLEX) 75 zSolveFinalize(&lu->options, &lu->SOLVEstruct); 76 #else 77 dSolveFinalize(&lu->options, &lu->SOLVEstruct); 78 #endif 79 } 80 } 81 Destroy_LU(A->cmap->N, &lu->grid, &lu->LUstruct); 82 ScalePermstructFree(&lu->ScalePermstruct); 83 LUstructFree(&lu->LUstruct); 84 85 /* Release the SuperLU_DIST process grid. */ 86 superlu_gridexit(&lu->grid); 87 88 ierr = MPI_Comm_free(&(lu->comm_superlu));CHKERRQ(ierr); 89 } 90 91 ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 92 PetscFunctionReturn(0); 93 } 94 95 #undef __FUNCT__ 96 #define __FUNCT__ "MatSolve_SuperLU_DIST" 97 PetscErrorCode MatSolve_SuperLU_DIST(Mat A,Vec b_mpi,Vec x) 98 { 99 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)A->spptr; 100 PetscErrorCode ierr; 101 PetscMPIInt size; 102 PetscInt m=A->rmap->N, N=A->cmap->N; 103 SuperLUStat_t stat; 104 double berr[1]; 105 PetscScalar *bptr; 106 PetscInt nrhs=1; 107 Vec x_seq; 108 IS iden; 109 VecScatter scat; 110 int info; /* SuperLU_Dist info code is ALWAYS an int, even with long long indices */ 111 112 PetscFunctionBegin; 113 ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 114 if (size > 1) { 115 if (lu->MatInputMode == GLOBAL) { /* global mat input, convert b to x_seq */ 116 ierr = VecCreateSeq(PETSC_COMM_SELF,N,&x_seq);CHKERRQ(ierr); 117 ierr = ISCreateStride(PETSC_COMM_SELF,N,0,1,&iden);CHKERRQ(ierr); 118 ierr = VecScatterCreate(b_mpi,iden,x_seq,iden,&scat);CHKERRQ(ierr); 119 ierr = ISDestroy(iden);CHKERRQ(ierr); 120 121 ierr = VecScatterBegin(scat,b_mpi,x_seq,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 122 ierr = VecScatterEnd(scat,b_mpi,x_seq,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 123 ierr = VecGetArray(x_seq,&bptr);CHKERRQ(ierr); 124 } else { /* distributed mat input */ 125 ierr = VecCopy(b_mpi,x);CHKERRQ(ierr); 126 ierr = VecGetArray(x,&bptr);CHKERRQ(ierr); 127 } 128 } else { /* size == 1 */ 129 ierr = VecCopy(b_mpi,x);CHKERRQ(ierr); 130 ierr = VecGetArray(x,&bptr);CHKERRQ(ierr); 131 } 132 133 if (lu->options.Fact != FACTORED) SETERRQ(PETSC_ERR_ARG_WRONG,"SuperLU_DIST options.Fact mush equal FACTORED"); 134 135 PStatInit(&stat); /* Initialize the statistics variables. */ 136 if (lu->MatInputMode == GLOBAL) { 137 #if defined(PETSC_USE_COMPLEX) 138 pzgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct,(doublecomplex*)bptr, m, nrhs, 139 &lu->grid, &lu->LUstruct, berr, &stat, &info); 140 #else 141 pdgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct,bptr, m, nrhs, 142 &lu->grid, &lu->LUstruct, berr, &stat, &info); 143 #endif 144 } else { /* distributed mat input */ 145 #if defined(PETSC_USE_COMPLEX) 146 pzgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, (doublecomplex*)bptr, A->rmap->N, nrhs, &lu->grid, 147 &lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &info); 148 if (info) SETERRQ1(PETSC_ERR_LIB,"pzgssvx fails, info: %d\n",info); 149 #else 150 pdgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, bptr, A->rmap->N, nrhs, &lu->grid, 151 &lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &info); 152 if (info) SETERRQ1(PETSC_ERR_LIB,"pdgssvx fails, info: %d\n",info); 153 #endif 154 } 155 if (lu->options.PrintStat) { 156 PStatPrint(&lu->options, &stat, &lu->grid); /* Print the statistics. */ 157 } 158 PStatFree(&stat); 159 160 if (size > 1) { 161 if (lu->MatInputMode == GLOBAL){ /* convert seq x to mpi x */ 162 ierr = VecRestoreArray(x_seq,&bptr);CHKERRQ(ierr); 163 ierr = VecScatterBegin(scat,x_seq,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 164 ierr = VecScatterEnd(scat,x_seq,x,INSERT_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 165 ierr = VecScatterDestroy(scat);CHKERRQ(ierr); 166 ierr = VecDestroy(x_seq);CHKERRQ(ierr); 167 } else { 168 ierr = VecRestoreArray(x,&bptr);CHKERRQ(ierr); 169 } 170 } else { 171 ierr = VecRestoreArray(x,&bptr);CHKERRQ(ierr); 172 } 173 PetscFunctionReturn(0); 174 } 175 176 #undef __FUNCT__ 177 #define __FUNCT__ "MatLUFactorNumeric_SuperLU_DIST" 178 PetscErrorCode MatLUFactorNumeric_SuperLU_DIST(Mat F,Mat A,const MatFactorInfo *info) 179 { 180 Mat *tseq,A_seq = PETSC_NULL; 181 Mat_SeqAIJ *aa,*bb; 182 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*)(F)->spptr; 183 PetscErrorCode ierr; 184 PetscInt M=A->rmap->N,N=A->cmap->N,i,*ai,*aj,*bi,*bj,nz,rstart,*garray, 185 m=A->rmap->n, irow,colA_start,j,jcol,jB,countA,countB,*bjj,*ajj; 186 int sinfo; /* SuperLU_Dist info flag is always an int even with long long indices */ 187 PetscMPIInt size,rank; 188 SuperLUStat_t stat; 189 double *berr=0; 190 IS isrow; 191 PetscLogDouble time0,time,time_min,time_max; 192 Mat F_diag=PETSC_NULL; 193 #if defined(PETSC_USE_COMPLEX) 194 doublecomplex *av, *bv; 195 #else 196 double *av, *bv; 197 #endif 198 199 PetscFunctionBegin; 200 ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 201 ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 202 203 if (lu->options.PrintStat) { /* collect time for mat conversion */ 204 ierr = MPI_Barrier(((PetscObject)A)->comm);CHKERRQ(ierr); 205 ierr = PetscGetTime(&time0);CHKERRQ(ierr); 206 } 207 208 if (lu->MatInputMode == GLOBAL) { /* global mat input */ 209 if (size > 1) { /* convert mpi A to seq mat A */ 210 ierr = ISCreateStride(PETSC_COMM_SELF,M,0,1,&isrow);CHKERRQ(ierr); 211 ierr = MatGetSubMatrices(A,1,&isrow,&isrow,MAT_INITIAL_MATRIX,&tseq);CHKERRQ(ierr); 212 ierr = ISDestroy(isrow);CHKERRQ(ierr); 213 214 A_seq = *tseq; 215 ierr = PetscFree(tseq);CHKERRQ(ierr); 216 aa = (Mat_SeqAIJ*)A_seq->data; 217 } else { 218 aa = (Mat_SeqAIJ*)A->data; 219 } 220 221 /* Convert Petsc NR matrix to SuperLU_DIST NC. 222 Note: memories of lu->val, col and row are allocated by CompRow_to_CompCol_dist()! */ 223 if (lu->options.Fact != DOFACT) {/* successive numeric factorization, sparsity pattern is reused. */ 224 if (lu->FactPattern == SamePattern_SameRowPerm){ 225 Destroy_CompCol_Matrix_dist(&lu->A_sup); 226 /* Destroy_LU(N, &lu->grid, &lu->LUstruct); Crash! Comment it out does not lead to mem leak. */ 227 lu->options.Fact = SamePattern_SameRowPerm; /* matrix has similar numerical values */ 228 } else { 229 Destroy_CompCol_Matrix_dist(&lu->A_sup); 230 Destroy_LU(N, &lu->grid, &lu->LUstruct); 231 lu->options.Fact = SamePattern; 232 } 233 } 234 #if defined(PETSC_USE_COMPLEX) 235 zCompRow_to_CompCol_dist(M,N,aa->nz,(doublecomplex*)aa->a,aa->j,aa->i,&lu->val,&lu->col, &lu->row); 236 #else 237 dCompRow_to_CompCol_dist(M,N,aa->nz,aa->a,aa->j,aa->i,&lu->val, &lu->col, &lu->row); 238 #endif 239 240 /* Create compressed column matrix A_sup. */ 241 #if defined(PETSC_USE_COMPLEX) 242 zCreate_CompCol_Matrix_dist(&lu->A_sup, M, N, aa->nz, lu->val, lu->col, lu->row, SLU_NC, SLU_Z, SLU_GE); 243 #else 244 dCreate_CompCol_Matrix_dist(&lu->A_sup, M, N, aa->nz, lu->val, lu->col, lu->row, SLU_NC, SLU_D, SLU_GE); 245 #endif 246 } else { /* distributed mat input */ 247 Mat_MPIAIJ *mat = (Mat_MPIAIJ*)A->data; 248 aa=(Mat_SeqAIJ*)(mat->A)->data; 249 bb=(Mat_SeqAIJ*)(mat->B)->data; 250 ai=aa->i; aj=aa->j; 251 bi=bb->i; bj=bb->j; 252 #if defined(PETSC_USE_COMPLEX) 253 av=(doublecomplex*)aa->a; 254 bv=(doublecomplex*)bb->a; 255 #else 256 av=aa->a; 257 bv=bb->a; 258 #endif 259 rstart = A->rmap->rstart; 260 nz = aa->nz + bb->nz; 261 garray = mat->garray; 262 263 if (lu->options.Fact == DOFACT) {/* first numeric factorization */ 264 #if defined(PETSC_USE_COMPLEX) 265 zallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row); 266 #else 267 dallocateA_dist(m, nz, &lu->val, &lu->col, &lu->row); 268 #endif 269 } else { /* successive numeric factorization, sparsity pattern and perm_c are reused. */ 270 if (lu->FactPattern == SamePattern_SameRowPerm){ 271 /* Destroy_LU(N, &lu->grid, &lu->LUstruct); Crash! Comment it out does not lead to mem leak. */ 272 lu->options.Fact = SamePattern_SameRowPerm; /* matrix has similar numerical values */ 273 } else { 274 Destroy_LU(N, &lu->grid, &lu->LUstruct); /* Deallocate storage associated with the L and U matrices. */ 275 lu->options.Fact = SamePattern; 276 } 277 } 278 nz = 0; irow = rstart; 279 for ( i=0; i<m; i++ ) { 280 lu->row[i] = nz; 281 countA = ai[i+1] - ai[i]; 282 countB = bi[i+1] - bi[i]; 283 ajj = aj + ai[i]; /* ptr to the beginning of this row */ 284 bjj = bj + bi[i]; 285 286 /* B part, smaller col index */ 287 colA_start = rstart + ajj[0]; /* the smallest global col index of A */ 288 jB = 0; 289 for (j=0; j<countB; j++){ 290 jcol = garray[bjj[j]]; 291 if (jcol > colA_start) { 292 jB = j; 293 break; 294 } 295 lu->col[nz] = jcol; 296 lu->val[nz++] = *bv++; 297 if (j==countB-1) jB = countB; 298 } 299 300 /* A part */ 301 for (j=0; j<countA; j++){ 302 lu->col[nz] = rstart + ajj[j]; 303 lu->val[nz++] = *av++; 304 } 305 306 /* B part, larger col index */ 307 for (j=jB; j<countB; j++){ 308 lu->col[nz] = garray[bjj[j]]; 309 lu->val[nz++] = *bv++; 310 } 311 } 312 lu->row[m] = nz; 313 #if defined(PETSC_USE_COMPLEX) 314 zCreate_CompRowLoc_Matrix_dist(&lu->A_sup, M, N, nz, m, rstart, 315 lu->val, lu->col, lu->row, SLU_NR_loc, SLU_Z, SLU_GE); 316 #else 317 dCreate_CompRowLoc_Matrix_dist(&lu->A_sup, M, N, nz, m, rstart, 318 lu->val, lu->col, lu->row, SLU_NR_loc, SLU_D, SLU_GE); 319 #endif 320 } 321 if (lu->options.PrintStat) { 322 ierr = PetscGetTime(&time);CHKERRQ(ierr); 323 time0 = time - time0; 324 } 325 326 /* Factor the matrix. */ 327 PStatInit(&stat); /* Initialize the statistics variables. */ 328 CHKMEMQ; 329 if (lu->MatInputMode == GLOBAL) { /* global mat input */ 330 #if defined(PETSC_USE_COMPLEX) 331 pzgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, M, 0, 332 &lu->grid, &lu->LUstruct, berr, &stat, &sinfo); 333 #else 334 pdgssvx_ABglobal(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, M, 0, 335 &lu->grid, &lu->LUstruct, berr, &stat, &sinfo); 336 #endif 337 } else { /* distributed mat input */ 338 #if defined(PETSC_USE_COMPLEX) 339 pzgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, M, 0, &lu->grid, 340 &lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &sinfo); 341 if (sinfo) SETERRQ1(PETSC_ERR_LIB,"pzgssvx fails, info: %d\n",sinfo); 342 #else 343 pdgssvx(&lu->options, &lu->A_sup, &lu->ScalePermstruct, 0, M, 0, &lu->grid, 344 &lu->LUstruct, &lu->SOLVEstruct, berr, &stat, &sinfo); 345 if (sinfo) SETERRQ1(PETSC_ERR_LIB,"pdgssvx fails, info: %d\n",sinfo); 346 #endif 347 } 348 349 if (lu->MatInputMode == GLOBAL && size > 1){ 350 ierr = MatDestroy(A_seq);CHKERRQ(ierr); 351 } 352 353 if (lu->options.PrintStat) { 354 if (size > 1){ 355 ierr = MPI_Reduce(&time0,&time_max,1,MPI_DOUBLE,MPI_MAX,0,((PetscObject)A)->comm); 356 ierr = MPI_Reduce(&time0,&time_min,1,MPI_DOUBLE,MPI_MIN,0,((PetscObject)A)->comm); 357 ierr = MPI_Reduce(&time0,&time,1,MPI_DOUBLE,MPI_SUM,0,((PetscObject)A)->comm); 358 time = time/size; /* average time */ 359 if (!rank) { 360 ierr = PetscPrintf(PETSC_COMM_SELF, " Mat conversion(PETSc->SuperLU_DIST) time (max/min/avg): \n %g / %g / %g\n",time_max,time_min,time);CHKERRQ(ierr); 361 } 362 } else { 363 ierr = PetscPrintf(PETSC_COMM_SELF, " Mat conversion(PETSc->SuperLU_DIST) time: \n %g\n",time0);CHKERRQ(ierr); 364 } 365 PStatPrint(&lu->options, &stat, &lu->grid); /* Print the statistics. */ 366 } 367 PStatFree(&stat); 368 if (size > 1){ 369 F_diag = ((Mat_MPIAIJ *)(F)->data)->A; 370 F_diag->assembled = PETSC_TRUE; 371 } 372 (F)->assembled = PETSC_TRUE; 373 (F)->preallocated = PETSC_TRUE; 374 lu->options.Fact = FACTORED; /* The factored form of A is supplied. Local option used by this func. only */ 375 PetscFunctionReturn(0); 376 } 377 378 /* Note the Petsc r and c permutations are ignored */ 379 #undef __FUNCT__ 380 #define __FUNCT__ "MatLUFactorSymbolic_SuperLU_DIST" 381 PetscErrorCode MatLUFactorSymbolic_SuperLU_DIST(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 382 { 383 Mat_SuperLU_DIST *lu = (Mat_SuperLU_DIST*) (F)->spptr; 384 PetscInt M=A->rmap->N,N=A->cmap->N; 385 386 PetscFunctionBegin; 387 /* Initialize the SuperLU process grid. */ 388 superlu_gridinit(lu->comm_superlu, lu->nprow, lu->npcol, &lu->grid); 389 390 /* Initialize ScalePermstruct and LUstruct. */ 391 ScalePermstructInit(M, N, &lu->ScalePermstruct); 392 LUstructInit(M, N, &lu->LUstruct); 393 (F)->ops->lufactornumeric = MatLUFactorNumeric_SuperLU_DIST; 394 (F)->ops->solve = MatSolve_SuperLU_DIST; 395 PetscFunctionReturn(0); 396 } 397 398 EXTERN_C_BEGIN 399 #undef __FUNCT__ 400 #define __FUNCT__ "MatFactorGetSolverPackage_aij_superlu_dist" 401 PetscErrorCode MatFactorGetSolverPackage_aij_superlu_dist(Mat A,const MatSolverPackage *type) 402 { 403 PetscFunctionBegin; 404 *type = MAT_SOLVER_SUPERLU_DIST; 405 PetscFunctionReturn(0); 406 } 407 EXTERN_C_END 408 409 #undef __FUNCT__ 410 #define __FUNCT__ "MatGetFactor_aij_superlu_dist" 411 PetscErrorCode MatGetFactor_aij_superlu_dist(Mat A,MatFactorType ftype,Mat *F) 412 { 413 Mat B; 414 Mat_SuperLU_DIST *lu; 415 PetscErrorCode ierr; 416 PetscInt M=A->rmap->N,N=A->cmap->N,indx; 417 PetscMPIInt size; 418 superlu_options_t options; 419 PetscTruth flg; 420 const char *pctype[] = {"MMD_AT_PLUS_A","NATURAL","MMD_ATA","PARMETIS"}; 421 const char *prtype[] = {"LargeDiag","NATURAL"}; 422 const char *factPattern[] = {"SamePattern","SamePattern_SameRowPerm"}; 423 424 PetscFunctionBegin; 425 /* Create the factorization matrix */ 426 ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 427 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,M,N);CHKERRQ(ierr); 428 ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 429 ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL); 430 ierr = MatMPIAIJSetPreallocation(B,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 431 432 B->ops->lufactorsymbolic = MatLUFactorSymbolic_SuperLU_DIST; 433 B->ops->view = MatView_SuperLU_DIST; 434 ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_aij_superlu_dist",MatFactorGetSolverPackage_aij_superlu_dist);CHKERRQ(ierr); 435 B->factor = MAT_FACTOR_LU; 436 437 ierr = PetscNewLog(B,Mat_SuperLU_DIST,&lu);CHKERRQ(ierr); 438 B->spptr = lu; 439 440 /* Set the default input options: 441 options.Fact = DOFACT; 442 options.Equil = YES; 443 options.ParSymbFact = NO; 444 options.ColPerm = MMD_AT_PLUS_A; 445 options.RowPerm = LargeDiag; 446 options.ReplaceTinyPivot = YES; 447 options.IterRefine = DOUBLE; 448 options.Trans = NOTRANS; 449 options.SolveInitialized = NO; 450 options.RefineInitialized = NO; 451 options.PrintStat = YES; 452 */ 453 set_default_options_dist(&options); 454 455 ierr = MPI_Comm_dup(((PetscObject)A)->comm,&(lu->comm_superlu));CHKERRQ(ierr); 456 ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 457 /* Default num of process columns and rows */ 458 lu->npcol = PetscMPIIntCast((PetscInt)(0.5 + sqrt((PetscReal)size))); 459 if (!lu->npcol) lu->npcol = 1; 460 while (lu->npcol > 0) { 461 lu->nprow = PetscMPIIntCast(size/lu->npcol); 462 if (size == lu->nprow * lu->npcol) break; 463 lu->npcol --; 464 } 465 466 ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"SuperLU_Dist Options","Mat");CHKERRQ(ierr); 467 ierr = PetscOptionsInt("-mat_superlu_dist_r","Number rows in processor partition","None",lu->nprow,&lu->nprow,PETSC_NULL);CHKERRQ(ierr); 468 ierr = PetscOptionsInt("-mat_superlu_dist_c","Number columns in processor partition","None",lu->npcol,&lu->npcol,PETSC_NULL);CHKERRQ(ierr); 469 if (size != lu->nprow * lu->npcol) 470 SETERRQ3(PETSC_ERR_ARG_SIZ,"Number of processes %d must equal to nprow %d * npcol %d",size,lu->nprow,lu->npcol); 471 472 lu->MatInputMode = DISTRIBUTED; 473 ierr = PetscOptionsEnum("-mat_superlu_dist_matinput","Matrix input mode (global or distributed)","None",SuperLU_MatInputModes,(PetscEnum)lu->MatInputMode,(PetscEnum*)&lu->MatInputMode,PETSC_NULL);CHKERRQ(ierr); 474 if(lu->MatInputMode == DISTRIBUTED && size == 1) lu->MatInputMode = GLOBAL; 475 476 ierr = PetscOptionsTruth("-mat_superlu_dist_equil","Equilibrate matrix","None",PETSC_TRUE,&flg,0);CHKERRQ(ierr); 477 if (!flg) { 478 options.Equil = NO; 479 } 480 481 ierr = PetscOptionsEList("-mat_superlu_dist_rowperm","Row permutation","None",prtype,2,prtype[0],&indx,&flg);CHKERRQ(ierr); 482 if (flg) { 483 switch (indx) { 484 case 0: 485 options.RowPerm = LargeDiag; 486 break; 487 case 1: 488 options.RowPerm = NOROWPERM; 489 break; 490 } 491 } 492 493 ierr = PetscOptionsEList("-mat_superlu_dist_colperm","Column permutation","None",pctype,4,pctype[0],&indx,&flg);CHKERRQ(ierr); 494 if (flg) { 495 switch (indx) { 496 case 0: 497 options.ColPerm = MMD_AT_PLUS_A; 498 break; 499 case 1: 500 options.ColPerm = NATURAL; 501 break; 502 case 2: 503 options.ColPerm = MMD_ATA; 504 break; 505 case 3: 506 options.ColPerm = PARMETIS; 507 break; 508 } 509 } 510 511 ierr = PetscOptionsTruth("-mat_superlu_dist_replacetinypivot","Replace tiny pivots","None",PETSC_TRUE,&flg,0);CHKERRQ(ierr); 512 if (!flg) { 513 options.ReplaceTinyPivot = NO; 514 } 515 516 options.ParSymbFact = NO; 517 ierr = PetscOptionsTruth("-mat_superlu_dist_parsymbfact","Parallel symbolic factorization","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); 518 if (flg){ 519 #ifdef PETSC_HAVE_PARMETIS 520 options.ParSymbFact = YES; 521 options.ColPerm = PARMETIS; /* in v2.2, PARMETIS is forced for ParSymbFact regardless of user ordering setting */ 522 #else 523 printf("parsymbfact needs PARMETIS"); 524 #endif 525 } 526 527 lu->FactPattern = SamePattern; 528 ierr = PetscOptionsEList("-mat_superlu_dist_fact","Sparsity pattern for repeated matrix factorization","None",factPattern,2,factPattern[0],&indx,&flg);CHKERRQ(ierr); 529 if (flg) { 530 switch (indx) { 531 case 0: 532 lu->FactPattern = SamePattern; 533 break; 534 case 1: 535 lu->FactPattern = SamePattern_SameRowPerm; 536 break; 537 } 538 } 539 540 options.IterRefine = NOREFINE; 541 ierr = PetscOptionsTruth("-mat_superlu_dist_iterrefine","Use iterative refinement","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); 542 if (flg) { 543 options.IterRefine = DOUBLE; 544 } 545 546 if (PetscLogPrintInfo) { 547 options.PrintStat = YES; 548 } else { 549 options.PrintStat = NO; 550 } 551 ierr = PetscOptionsTruth("-mat_superlu_dist_statprint","Print factorization information","None", 552 (PetscTruth)options.PrintStat,(PetscTruth*)&options.PrintStat,0);CHKERRQ(ierr); 553 PetscOptionsEnd(); 554 555 lu->options = options; 556 lu->options.Fact = DOFACT; 557 lu->CleanUpSuperLU_Dist = PETSC_TRUE; 558 *F = B; 559 PetscFunctionReturn(0); 560 } 561 562 EXTERN_C_BEGIN 563 #undef __FUNCT__ 564 #define __FUNCT__ "MatGetFactor_seqaij_superlu_dist" 565 PetscErrorCode MatGetFactor_seqaij_superlu_dist(Mat A,MatFactorType ftype,Mat *F) 566 { 567 PetscErrorCode ierr; 568 569 PetscFunctionBegin; 570 ierr = MatGetFactor_aij_superlu_dist(A,ftype,F);CHKERRQ(ierr); 571 PetscFunctionReturn(0); 572 } 573 EXTERN_C_END 574 575 EXTERN_C_BEGIN 576 #undef __FUNCT__ 577 #define __FUNCT__ "MatGetFactor_mpiaij_superlu_dist" 578 PetscErrorCode MatGetFactor_mpiaij_superlu_dist(Mat A,MatFactorType ftype,Mat *F) 579 { 580 PetscErrorCode ierr; 581 582 PetscFunctionBegin; 583 ierr = MatGetFactor_aij_superlu_dist(A,ftype,F);CHKERRQ(ierr); 584 PetscFunctionReturn(0); 585 } 586 EXTERN_C_END 587 588 #undef __FUNCT__ 589 #define __FUNCT__ "MatFactorInfo_SuperLU_DIST" 590 PetscErrorCode MatFactorInfo_SuperLU_DIST(Mat A,PetscViewer viewer) 591 { 592 Mat_SuperLU_DIST *lu=(Mat_SuperLU_DIST*)A->spptr; 593 superlu_options_t options; 594 PetscErrorCode ierr; 595 596 PetscFunctionBegin; 597 /* check if matrix is superlu_dist type */ 598 if (A->ops->solve != MatSolve_SuperLU_DIST) PetscFunctionReturn(0); 599 600 options = lu->options; 601 ierr = PetscViewerASCIIPrintf(viewer,"SuperLU_DIST run parameters:\n");CHKERRQ(ierr); 602 ierr = PetscViewerASCIIPrintf(viewer," Process grid nprow %D x npcol %D \n",lu->nprow,lu->npcol);CHKERRQ(ierr); 603 ierr = PetscViewerASCIIPrintf(viewer," Equilibrate matrix %s \n",PetscTruths[options.Equil != NO]);CHKERRQ(ierr); 604 ierr = PetscViewerASCIIPrintf(viewer," Matrix input mode %d \n",lu->MatInputMode);CHKERRQ(ierr); 605 ierr = PetscViewerASCIIPrintf(viewer," Replace tiny pivots %s \n",PetscTruths[options.ReplaceTinyPivot != NO]);CHKERRQ(ierr); 606 ierr = PetscViewerASCIIPrintf(viewer," Use iterative refinement %s \n",PetscTruths[options.IterRefine == DOUBLE]);CHKERRQ(ierr); 607 ierr = PetscViewerASCIIPrintf(viewer," Processors in row %d col partition %d \n",lu->nprow,lu->npcol);CHKERRQ(ierr); 608 ierr = PetscViewerASCIIPrintf(viewer," Row permutation %s \n",(options.RowPerm == NOROWPERM) ? "NATURAL": "LargeDiag");CHKERRQ(ierr); 609 if (options.ColPerm == NATURAL) { 610 ierr = PetscViewerASCIIPrintf(viewer," Column permutation NATURAL\n");CHKERRQ(ierr); 611 } else if (options.ColPerm == MMD_AT_PLUS_A) { 612 ierr = PetscViewerASCIIPrintf(viewer," Column permutation MMD_AT_PLUS_A\n");CHKERRQ(ierr); 613 } else if (options.ColPerm == MMD_ATA) { 614 ierr = PetscViewerASCIIPrintf(viewer," Column permutation MMD_ATA\n");CHKERRQ(ierr); 615 } else if (options.ColPerm == PARMETIS) { 616 ierr = PetscViewerASCIIPrintf(viewer," Column permutation PARMETIS\n");CHKERRQ(ierr); 617 } else { 618 SETERRQ(PETSC_ERR_ARG_WRONG,"Unknown column permutation"); 619 } 620 621 ierr = PetscViewerASCIIPrintf(viewer," Parallel symbolic factorization %s \n",PetscTruths[options.ParSymbFact != NO]);CHKERRQ(ierr); 622 623 if (lu->FactPattern == SamePattern){ 624 ierr = PetscViewerASCIIPrintf(viewer," Repeated factorization SamePattern\n");CHKERRQ(ierr); 625 } else { 626 ierr = PetscViewerASCIIPrintf(viewer," Repeated factorization SamePattern_SameRowPerm\n");CHKERRQ(ierr); 627 } 628 PetscFunctionReturn(0); 629 } 630 631 #undef __FUNCT__ 632 #define __FUNCT__ "MatView_SuperLU_DIST" 633 PetscErrorCode MatView_SuperLU_DIST(Mat A,PetscViewer viewer) 634 { 635 PetscErrorCode ierr; 636 PetscTruth iascii; 637 PetscViewerFormat format; 638 639 PetscFunctionBegin; 640 ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 641 if (iascii) { 642 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 643 if (format == PETSC_VIEWER_ASCII_INFO) { 644 ierr = MatFactorInfo_SuperLU_DIST(A,viewer);CHKERRQ(ierr); 645 } 646 } 647 PetscFunctionReturn(0); 648 } 649 650 651 /*MC 652 MAT_SOLVER_SUPERLU_DIST - Parallel direct solver package for LU factorization 653 654 Works with AIJ matrices 655 656 Options Database Keys: 657 + -mat_superlu_dist_r <n> - number of rows in processor partition 658 . -mat_superlu_dist_c <n> - number of columns in processor partition 659 . -mat_superlu_dist_matinput <0,1> - matrix input mode; 0=global, 1=distributed 660 . -mat_superlu_dist_equil - equilibrate the matrix 661 . -mat_superlu_dist_rowperm <LargeDiag,NATURAL> - row permutation 662 . -mat_superlu_dist_colperm <MMD_AT_PLUS_A,MMD_ATA,NATURAL> - column permutation 663 . -mat_superlu_dist_replacetinypivot - replace tiny pivots 664 . -mat_superlu_dist_fact <SamePattern> (choose one of) SamePattern SamePattern_SameRowPerm 665 . -mat_superlu_dist_iterrefine - use iterative refinement 666 - -mat_superlu_dist_statprint - print factorization information 667 668 Level: beginner 669 670 .seealso: PCLU 671 672 .seealso: PCFactorSetMatSolverPackage(), MatSolverPackage 673 674 M*/ 675 676