1 #ifndef lint 2 static char vcid[] = "$Id: aijfact.c,v 1.26 1995/07/10 05:02:25 bsmith Exp bsmith $"; 3 #endif 4 5 6 #include "aij.h" 7 #include "inline/spops.h" 8 /* 9 Factorization code for AIJ format. 10 */ 11 12 int MatLUFactorSymbolic_AIJ(Mat mat,IS isrow,IS iscol,double f,Mat *fact) 13 { 14 Mat_AIJ *aij = (Mat_AIJ *) mat->data, *aijnew; 15 IS isicol; 16 int *r,*ic, ierr, i, n = aij->m, *ai = aij->i, *aj = aij->j; 17 int *ainew,*ajnew, jmax,*fill, *ajtmp, nz; 18 int *idnew, idx, row,m,fm, nnz, nzi,len, realloc = 0,nzbd,*im; 19 20 if (n != aij->n) 21 SETERRQ(1,"MatLUFactorSymbolic_AIJ:Matrix must be square"); 22 if (!isrow) 23 SETERRQ(1,"MatLUFactorSymbolic_AIJ:Matrix must have row permutation"); 24 if (!iscol) 25 SETERRQ(1,"MatLUFactorSymbolic_AIJ:Matrix must have column permutation"); 26 27 ierr = ISInvertPermutation(iscol,&isicol); CHKERRQ(ierr); 28 ISGetIndices(isrow,&r); ISGetIndices(isicol,&ic); 29 30 /* get new row pointers */ 31 ainew = (int *) PETSCMALLOC( (n+1)*sizeof(int) ); CHKPTRQ(ainew); 32 ainew[0] = 1; 33 /* don't know how many column pointers are needed so estimate */ 34 jmax = (int) (f*ai[n]); 35 ajnew = (int *) PETSCMALLOC( (jmax)*sizeof(int) ); CHKPTRQ(ajnew); 36 /* fill is a linked list of nonzeros in active row */ 37 fill = (int *) PETSCMALLOC( (2*n+1)*sizeof(int)); CHKPTRQ(fill); 38 im = fill + n + 1; 39 /* idnew is location of diagonal in factor */ 40 idnew = (int *) PETSCMALLOC( (n+1)*sizeof(int)); CHKPTRQ(idnew); 41 idnew[0] = 1; 42 43 for ( i=0; i<n; i++ ) { 44 /* first copy previous fill into linked list */ 45 nnz = nz = ai[r[i]+1] - ai[r[i]]; 46 ajtmp = aj + ai[r[i]] - 1; 47 fill[n] = n; 48 while (nz--) { 49 fm = n; 50 idx = ic[*ajtmp++ - 1]; 51 do { 52 m = fm; 53 fm = fill[m]; 54 } while (fm < idx); 55 fill[m] = idx; 56 fill[idx] = fm; 57 } 58 row = fill[n]; 59 while ( row < i ) { 60 ajtmp = ajnew + idnew[row]; 61 nzbd = 1 + idnew[row] - ainew[row]; 62 nz = im[row] - nzbd; 63 fm = row; 64 while (nz-- > 0) { 65 /* fm = n; */ 66 idx = *ajtmp++ - 1; 67 nzbd++; 68 if (idx == i) im[row] = nzbd; 69 do { 70 m = fm; 71 fm = fill[m]; 72 } while (fm < idx); 73 if (fm != idx) { 74 fill[m] = idx; 75 fill[idx] = fm; 76 fm = idx; 77 nnz++; 78 } 79 /* printf("i %d row %d nz %d idx %d fm %d\n",i,row,nz,idx,fm); */ 80 } 81 row = fill[row]; 82 } 83 /* copy new filled row into permanent storage */ 84 ainew[i+1] = ainew[i] + nnz; 85 if (ainew[i+1] > jmax+1) { 86 /* allocate a longer ajnew */ 87 int maxadd; 88 maxadd = (int) ((f*ai[n]*(n-i+5))/n); 89 if (maxadd < nnz) maxadd = (n-i)*(nnz+1); 90 jmax += maxadd; 91 ajtmp = (int *) PETSCMALLOC( jmax*sizeof(int) );CHKPTRQ(ajtmp); 92 PETSCMEMCPY(ajtmp,ajnew,(ainew[i]-1)*sizeof(int)); 93 PETSCFREE(ajnew); 94 ajnew = ajtmp; 95 realloc++; /* count how many times we realloc */ 96 } 97 ajtmp = ajnew + ainew[i] - 1; 98 fm = fill[n]; 99 nzi = 0; 100 im[i] = nnz; 101 while (nnz--) { 102 if (fm < i) nzi++; 103 *ajtmp++ = fm + 1; 104 fm = fill[fm]; 105 } 106 idnew[i] = ainew[i] + nzi; 107 } 108 109 PLogInfo((PetscObject)mat, 110 "Info:MatLUFactorSymbolic_AIJ:Reallocs %d Fill ratio:given %g needed %g\n", 111 realloc,f,((double)ainew[n])/((double)ai[i])); 112 113 ISDestroy(isicol); PETSCFREE(fill); 114 115 /* put together the new matrix */ 116 ierr = MatCreateSequentialAIJ(mat->comm,n, n, 0, 0, fact); CHKERRQ(ierr); 117 aijnew = (Mat_AIJ *) (*fact)->data; 118 PETSCFREE(aijnew->imax); 119 aijnew->singlemalloc = 0; 120 len = (ainew[n] - 1)*sizeof(Scalar); 121 /* the next line frees the default space generated by the Create() */ 122 PETSCFREE(aijnew->a); PETSCFREE(aijnew->ilen); 123 aijnew->a = (Scalar *) PETSCMALLOC( len ); CHKPTRQ(aijnew->a); 124 aijnew->j = ajnew; 125 aijnew->i = ainew; 126 aijnew->diag = idnew; 127 aijnew->ilen = 0; 128 aijnew->imax = 0; 129 aijnew->row = isrow; 130 aijnew->col = iscol; 131 (*fact)->factor = FACTOR_LU; 132 aijnew->solve_work = (Scalar *) PETSCMALLOC( n*sizeof(Scalar)); 133 CHKPTRQ(aijnew->solve_work); 134 /* In aijnew structure: Free imax, ilen, old a, old j. 135 Allocate idnew, solve_work, new a, new j */ 136 aijnew->mem += (ainew[n]-1-n)*(sizeof(int) + sizeof(Scalar)) + sizeof(int); 137 aijnew->maxnz = aijnew->nz = ainew[n] - 1; 138 139 /* Cannot do this here because child is destroyed before parent created 140 PLogObjectParent(*fact,isicol); */ 141 return 0; 142 } 143 144 int MatLUFactorNumeric_AIJ(Mat mat,Mat *infact) 145 { 146 Mat fact = *infact; 147 Mat_AIJ *aij = (Mat_AIJ *) mat->data, *aijnew = (Mat_AIJ *)fact->data; 148 IS iscol = aijnew->col, isrow = aijnew->row, isicol; 149 int *r,*ic, ierr, i, j, n = aij->m, *ai = aijnew->i, *aj = aijnew->j; 150 int *ajtmpold, *ajtmp, nz, row,*pj; 151 Scalar *rtmp,*v, *pv, *pc, multiplier; 152 153 ierr = ISInvertPermutation(iscol,&isicol); CHKERRQ(ierr); 154 PLogObjectParent(*infact,isicol); 155 ierr = ISGetIndices(isrow,&r); CHKERRQ(ierr); 156 ierr = ISGetIndices(isicol,&ic); CHKERRQ(ierr); 157 rtmp = (Scalar *) PETSCMALLOC( (n+1)*sizeof(Scalar) ); CHKPTRQ(rtmp); 158 159 for ( i=0; i<n; i++ ) { 160 nz = ai[i+1] - ai[i]; 161 ajtmp = aj + ai[i] - 1; 162 for ( j=0; j<nz; j++ ) rtmp[ajtmp[j]-1] = 0.0; 163 164 /* load in initial (unfactored row) */ 165 nz = aij->i[r[i]+1] - aij->i[r[i]]; 166 ajtmpold = aij->j + aij->i[r[i]] - 1; 167 v = aij->a + aij->i[r[i]] - 1; 168 for ( j=0; j<nz; j++ ) rtmp[ic[ajtmpold[j]-1]] = v[j]; 169 170 row = *ajtmp++ - 1; 171 while (row < i) { 172 pc = rtmp + row; 173 if (*pc != 0.0) { 174 nz = aijnew->diag[row] - ai[row]; 175 pv = aijnew->a + aijnew->diag[row] - 1; 176 pj = aijnew->j + aijnew->diag[row]; 177 multiplier = *pc * *pv++; 178 *pc = multiplier; 179 nz = ai[row+1] - ai[row] - 1 - nz; 180 PLogFlops(2*nz); 181 while (nz-->0) rtmp[*pj++ - 1] -= multiplier* *pv++; 182 } 183 row = *ajtmp++ - 1; 184 } 185 /* finished row so stick it into aijnew->a */ 186 pv = aijnew->a + ai[i] - 1; 187 pj = aijnew->j + ai[i] - 1; 188 nz = ai[i+1] - ai[i]; 189 if (rtmp[i] == 0.0) {SETERRQ(1,"MatLUFactorNumeric_AIJ:Zero pivot");} 190 rtmp[i] = 1.0/rtmp[i]; 191 for ( j=0; j<nz; j++ ) {pv[j] = rtmp[pj[j]-1];} 192 } 193 PETSCFREE(rtmp); 194 ierr = ISRestoreIndices(isicol,&ic); CHKERRQ(ierr); 195 ierr = ISRestoreIndices(isrow,&r); CHKERRQ(ierr); 196 ierr = ISDestroy(isicol); CHKERRQ(ierr); 197 fact->factor = FACTOR_LU; 198 aijnew->assembled = 1; 199 PLogFlops(aijnew->n); 200 return 0; 201 } 202 int MatLUFactor_AIJ(Mat matin,IS row,IS col,double f) 203 { 204 Mat_AIJ *mat = (Mat_AIJ *) matin->data; 205 int ierr; 206 Mat fact; 207 ierr = MatLUFactorSymbolic_AIJ(matin,row,col,f,&fact); CHKERRQ(ierr); 208 ierr = MatLUFactorNumeric_AIJ(matin,&fact); CHKERRQ(ierr); 209 210 /* free all the data structures from mat */ 211 PETSCFREE(mat->a); 212 if (!mat->singlemalloc) {PETSCFREE(mat->i); PETSCFREE(mat->j);} 213 if (mat->diag) PETSCFREE(mat->diag); 214 if (mat->ilen) PETSCFREE(mat->ilen); 215 if (mat->imax) PETSCFREE(mat->imax); 216 if (mat->row && mat->col && mat->row != mat->col) { 217 ISDestroy(mat->row); 218 } 219 if (mat->col) ISDestroy(mat->col); 220 PETSCFREE(mat); 221 222 PETSCMEMCPY(matin,fact,sizeof(struct _Mat)); 223 PETSCFREE(fact); 224 return 0; 225 } 226 227 int MatSolve_AIJ(Mat mat,Vec bb, Vec xx) 228 { 229 Mat_AIJ *aij = (Mat_AIJ *) mat->data; 230 IS iscol = aij->col, isrow = aij->row; 231 int *r,*c, ierr, i, n = aij->m, *vi, *ai = aij->i, *aj = aij->j; 232 int nz; 233 Scalar *x,*b,*tmp, *aa = aij->a, sum, *v; 234 235 if (mat->factor != FACTOR_LU) 236 SETERRQ(1,"MatSolve_AIJ:Cannot solve with unfactored matrix"); 237 238 ierr = VecGetArray(bb,&b); CHKERRQ(ierr); 239 ierr = VecGetArray(xx,&x); CHKERRQ(ierr); 240 tmp = aij->solve_work; 241 242 ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr); 243 ierr = ISGetIndices(iscol,&c);CHKERRQ(ierr); c = c + (n-1); 244 245 /* forward solve the lower triangular */ 246 tmp[0] = b[*r++]; 247 for ( i=1; i<n; i++ ) { 248 v = aa + ai[i] - 1; 249 vi = aj + ai[i] - 1; 250 nz = aij->diag[i] - ai[i]; 251 sum = b[*r++]; 252 while (nz--) sum -= *v++ * tmp[*vi++ - 1]; 253 tmp[i] = sum; 254 } 255 256 /* backward solve the upper triangular */ 257 for ( i=n-1; i>=0; i-- ){ 258 v = aa + aij->diag[i]; 259 vi = aj + aij->diag[i]; 260 nz = ai[i+1] - aij->diag[i] - 1; 261 sum = tmp[i]; 262 while (nz--) sum -= *v++ * tmp[*vi++ - 1]; 263 x[*c--] = tmp[i] = sum*aa[aij->diag[i]-1]; 264 } 265 266 PLogFlops(2*aij->nz - aij->n); 267 return 0; 268 } 269 int MatSolveAdd_AIJ(Mat mat,Vec bb, Vec yy, Vec xx) 270 { 271 Mat_AIJ *aij = (Mat_AIJ *) mat->data; 272 IS iscol = aij->col, isrow = aij->row; 273 int *r,*c, ierr, i, n = aij->m, *vi, *ai = aij->i, *aj = aij->j; 274 int nz; 275 Scalar *x,*b,*tmp, *aa = aij->a, sum, *v; 276 277 if (mat->factor != FACTOR_LU) 278 SETERRQ(1,"MatSolveAdd_AIJ: Cannot solve with unfactored matrix"); 279 if (yy != xx) {ierr = VecCopy(yy,xx); CHKERRQ(ierr);} 280 281 ierr = VecGetArray(bb,&b); CHKERRQ(ierr); 282 ierr = VecGetArray(xx,&x); CHKERRQ(ierr); 283 tmp = aij->solve_work; 284 285 ierr = ISGetIndices(isrow,&r); CHKERRQ(ierr); 286 ierr = ISGetIndices(iscol,&c); CHKERRQ(ierr); c = c + (n-1); 287 288 /* forward solve the lower triangular */ 289 tmp[0] = b[*r++]; 290 for ( i=1; i<n; i++ ) { 291 v = aa + ai[i] - 1; 292 vi = aj + ai[i] - 1; 293 nz = aij->diag[i] - ai[i]; 294 sum = b[*r++]; 295 while (nz--) sum -= *v++ * tmp[*vi++ - 1]; 296 tmp[i] = sum; 297 } 298 299 /* backward solve the upper triangular */ 300 for ( i=n-1; i>=0; i-- ){ 301 v = aa + aij->diag[i]; 302 vi = aj + aij->diag[i]; 303 nz = ai[i+1] - aij->diag[i] - 1; 304 sum = tmp[i]; 305 while (nz--) sum -= *v++ * tmp[*vi++ - 1]; 306 tmp[i] = sum*aa[aij->diag[i]-1]; 307 x[*c--] += tmp[i]; 308 } 309 310 PLogFlops(2*aij->nz); 311 return 0; 312 } 313 /* -------------------------------------------------------------------*/ 314 int MatSolveTrans_AIJ(Mat mat,Vec bb, Vec xx) 315 { 316 Mat_AIJ *aij = (Mat_AIJ *) mat->data; 317 IS iscol = aij->col, isrow = aij->row, invisrow,inviscol; 318 int *r,*c, ierr, i, n = aij->m, *vi, *ai = aij->i, *aj = aij->j; 319 int nz; 320 Scalar *x,*b,*tmp, *aa = aij->a, *v; 321 322 if (mat->factor != FACTOR_LU) 323 SETERRQ(1,"MatSolveTrans_AIJ:Cannot solve with unfactored matrix"); 324 ierr = VecGetArray(bb,&b); CHKERRQ(ierr); 325 ierr = VecGetArray(xx,&x); CHKERRQ(ierr); 326 tmp = aij->solve_work; 327 328 /* invert the permutations */ 329 ierr = ISInvertPermutation(isrow,&invisrow); CHKERRQ(ierr); 330 ierr = ISInvertPermutation(iscol,&inviscol); CHKERRQ(ierr); 331 332 333 ierr = ISGetIndices(invisrow,&r); CHKERRQ(ierr); 334 ierr = ISGetIndices(inviscol,&c); CHKERRQ(ierr); 335 336 /* copy the b into temp work space according to permutation */ 337 for ( i=0; i<n; i++ ) tmp[c[i]] = b[i]; 338 339 /* forward solve the U^T */ 340 for ( i=0; i<n; i++ ) { 341 v = aa + aij->diag[i] - 1; 342 vi = aj + aij->diag[i]; 343 nz = ai[i+1] - aij->diag[i] - 1; 344 tmp[i] *= *v++; 345 while (nz--) { 346 tmp[*vi++ - 1] -= (*v++)*tmp[i]; 347 } 348 } 349 350 /* backward solve the L^T */ 351 for ( i=n-1; i>=0; i-- ){ 352 v = aa + aij->diag[i] - 2; 353 vi = aj + aij->diag[i] - 2; 354 nz = aij->diag[i] - ai[i]; 355 while (nz--) { 356 tmp[*vi-- - 1] -= (*v--)*tmp[i]; 357 } 358 } 359 360 /* copy tmp into x according to permutation */ 361 for ( i=0; i<n; i++ ) x[r[i]] = tmp[i]; 362 363 ISDestroy(invisrow); ISDestroy(inviscol); 364 365 PLogFlops(2*aij->nz-aij->n); 366 return 0; 367 } 368 369 int MatSolveTransAdd_AIJ(Mat mat,Vec bb, Vec zz,Vec xx) 370 { 371 Mat_AIJ *aij = (Mat_AIJ *) mat->data; 372 IS iscol = aij->col, isrow = aij->row, invisrow,inviscol; 373 int *r,*c, ierr, i, n = aij->m, *vi, *ai = aij->i, *aj = aij->j; 374 int nz; 375 Scalar *x,*b,*tmp, *aa = aij->a, *v; 376 377 if (mat->factor != FACTOR_LU) 378 SETERRQ(1,"MatSolveTransAdd_AIJ:Cannot solve with unfactored matrix"); 379 if (zz != xx) VecCopy(zz,xx); 380 381 ierr = VecGetArray(bb,&b); CHKERRQ(ierr); 382 ierr = VecGetArray(xx,&x); CHKERRQ(ierr); 383 tmp = aij->solve_work; 384 385 /* invert the permutations */ 386 ierr = ISInvertPermutation(isrow,&invisrow); CHKERRQ(ierr); 387 ierr = ISInvertPermutation(iscol,&inviscol); CHKERRQ(ierr); 388 389 390 ierr = ISGetIndices(invisrow,&r); CHKERRQ(ierr); 391 ierr = ISGetIndices(inviscol,&c); CHKERRQ(ierr); 392 393 /* copy the b into temp work space according to permutation */ 394 for ( i=0; i<n; i++ ) tmp[c[i]] = b[i]; 395 396 /* forward solve the U^T */ 397 for ( i=0; i<n; i++ ) { 398 v = aa + aij->diag[i] - 1; 399 vi = aj + aij->diag[i]; 400 nz = ai[i+1] - aij->diag[i] - 1; 401 tmp[i] *= *v++; 402 while (nz--) { 403 tmp[*vi++ - 1] -= (*v++)*tmp[i]; 404 } 405 } 406 407 /* backward solve the L^T */ 408 for ( i=n-1; i>=0; i-- ){ 409 v = aa + aij->diag[i] - 2; 410 vi = aj + aij->diag[i] - 2; 411 nz = aij->diag[i] - ai[i]; 412 while (nz--) { 413 tmp[*vi-- - 1] -= (*v--)*tmp[i]; 414 } 415 } 416 417 /* copy tmp into x according to permutation */ 418 for ( i=0; i<n; i++ ) x[r[i]] += tmp[i]; 419 420 ISDestroy(invisrow); ISDestroy(inviscol); 421 422 PLogFlops(2*aij->nz); 423 return 0; 424 } 425 /* ----------------------------------------------------------------*/ 426 int MatILUFactorSymbolic_AIJ(Mat mat,IS isrow,IS iscol,double f, 427 int levels,Mat *fact) 428 { 429 Mat_AIJ *aij = (Mat_AIJ *) mat->data, *aijnew; 430 IS isicol; 431 int *r,*ic, ierr, i, n = aij->m, *ai = aij->i, *aj = aij->j; 432 int *ainew,*ajnew, jmax,*fill, *ajtmp, nz, *lfill,*ajfill,*ajtmpf; 433 int *idnew, idx, row,m,fm, nnz, nzi,len, *im, nzbd, realloc = 0; 434 435 if (n != aij->n) 436 SETERRQ(1,"MatILUFactorSymbolic_AIJ:Matrix must be square"); 437 if (!isrow) 438 SETERRQ(1,"MatILUFactorSymbolic_AIJ:Matrix must have row permutation"); 439 if (!iscol) SETERRQ(1, 440 "MatILUFactorSymbolic_AIJ:Matrix must have column permutation"); 441 442 ierr = ISInvertPermutation(iscol,&isicol); CHKERRQ(ierr); 443 ISGetIndices(isrow,&r); ISGetIndices(isicol,&ic); 444 445 /* get new row pointers */ 446 ainew = (int *) PETSCMALLOC( (n+1)*sizeof(int) ); CHKPTRQ(ainew); 447 ainew[0] = 1; 448 /* don't know how many column pointers are needed so estimate */ 449 jmax = (int) (f*ai[n]); 450 ajnew = (int *) PETSCMALLOC( (jmax)*sizeof(int) ); CHKPTRQ(ajnew); 451 /* ajfill is level of fill for each fill entry */ 452 ajfill = (int *) PETSCMALLOC( (jmax)*sizeof(int) ); CHKPTRQ(ajfill); 453 /* fill is a linked list of nonzeros in active row */ 454 fill = (int *) PETSCMALLOC( (2*n+1)*sizeof(int)); CHKPTRQ(fill); 455 im = fill + n + 1; 456 /* lfill is level for each filled value */ 457 lfill = (int *) PETSCMALLOC( (n+1)*sizeof(int)); CHKPTRQ(lfill); 458 /* idnew is location of diagonal in factor */ 459 idnew = (int *) PETSCMALLOC( (n+1)*sizeof(int)); CHKPTRQ(idnew); 460 idnew[0] = 1; 461 462 for ( i=0; i<n; i++ ) { 463 /* first copy previous fill into linked list */ 464 nnz = nz = ai[r[i]+1] - ai[r[i]]; 465 ajtmp = aj + ai[r[i]] - 1; 466 fill[n] = n; 467 while (nz--) { 468 fm = n; 469 idx = ic[*ajtmp++ - 1]; 470 do { 471 m = fm; 472 fm = fill[m]; 473 } while (fm < idx); 474 fill[m] = idx; 475 fill[idx] = fm; 476 lfill[idx] = -1; 477 /* printf("i %d cols %d %d\n",i,nz,idx); */ 478 } 479 row = fill[n]; 480 while ( row < i ) { 481 ajtmp = ajnew + idnew[row]; 482 ajtmpf = ajfill + idnew[row]; 483 484 nzbd = 1 + idnew[row] - ainew[row]; 485 nz = im[row] - nzbd; 486 487 fm = fill[row]; m = row; 488 while (nz-- > 0) { 489 idx = *ajtmp++ - 1; 490 nzbd++; 491 if (idx == i) im[row] = nzbd; 492 while (fm < idx) { 493 m = fm; 494 fm = fill[m]; 495 } 496 if (fm != idx) { 497 lfill[idx] = *ajtmpf + 1; 498 if (lfill[idx] < levels) { 499 fill[m] = idx; 500 fill[idx] = fm; 501 fm = idx; 502 nnz++; 503 } 504 } 505 /* printf("i %d row %d nz %d idx %d fm %d level %d nnz %d\n",i,row,nz,idx,fm,*ajtmpf + 1,nnz); */ 506 ajtmpf++; 507 } 508 row = fill[row]; 509 } 510 /* copy new filled row into permanent storage */ 511 ainew[i+1] = ainew[i] + nnz; 512 if (ainew[i+1] > jmax+1) { 513 /* allocate a longer ajnew */ 514 int maxadd; 515 maxadd = (int) ((f*ai[n]*(n-i+5))/n); 516 if (maxadd < nnz) maxadd = (n-i)*(nnz+1); 517 jmax += maxadd; 518 ajtmp = (int *) PETSCMALLOC( jmax*sizeof(int) );CHKPTRQ(ajtmp); 519 PETSCMEMCPY(ajtmp,ajnew,(ainew[i]-1)*sizeof(int)); 520 PETSCFREE(ajnew); 521 ajnew = ajtmp; 522 /* allocate a longer ajfill */ 523 ajtmp = (int *) PETSCMALLOC( jmax*sizeof(int) );CHKPTRQ(ajtmp); 524 PETSCMEMCPY(ajtmp,ajfill,(ainew[i]-1)*sizeof(int)); 525 PETSCFREE(ajfill); 526 ajfill = ajtmp; 527 realloc++; 528 } 529 ajtmp = ajnew + ainew[i] - 1; 530 ajtmpf = ajfill + ainew[i] - 1; 531 fm = fill[n]; 532 im[i] = nnz; 533 nzi = 0; 534 while (nnz--) { 535 if (fm < i) nzi++; 536 *ajtmp++ = fm + 1; 537 *ajtmpf++ = lfill[fm]; 538 /* printf("i %d col %d level %d\n",i,fm,lfill[fm]); */ 539 fm = fill[fm]; 540 } 541 idnew[i] = ainew[i] + nzi; 542 } 543 PETSCFREE(ajfill); 544 ISDestroy(isicol); PETSCFREE(fill); PETSCFREE(lfill); 545 546 PLogInfo((PetscObject)mat, 547 "Info:MatILUFactorSymbolic_AIJ:Realloc %d Fill ratio:given %g needed %g\n", 548 realloc,f,((double)ainew[n])/((double)ai[i])); 549 550 /* put together the new matrix */ 551 ierr = MatCreateSequentialAIJ(mat->comm,n, n, 0, 0, fact); CHKERRQ(ierr); 552 aijnew = (Mat_AIJ *) (*fact)->data; 553 PETSCFREE(aijnew->imax); 554 aijnew->singlemalloc = 0; 555 len = (ainew[n] - 1)*sizeof(Scalar); 556 /* the next line frees the default space generated by the Create() */ 557 PETSCFREE(aijnew->a); PETSCFREE(aijnew->ilen); 558 aijnew->a = (Scalar *) PETSCMALLOC( len ); CHKPTRQ(aijnew->a); 559 aijnew->j = ajnew; 560 aijnew->i = ainew; 561 aijnew->diag = idnew; 562 aijnew->ilen = 0; 563 aijnew->imax = 0; 564 aijnew->row = isrow; 565 aijnew->col = iscol; 566 aijnew->solve_work = (Scalar *) PETSCMALLOC( (n+1)*sizeof(Scalar)); 567 CHKPTRQ(aijnew->solve_work); 568 /* In aijnew structure: Free imax, ilen, old a, old j. 569 Allocate idnew, solve_work, new a, new j */ 570 aijnew->mem += (ainew[n]-1-n)*(sizeof(int) + sizeof(Scalar)) + sizeof(int); 571 aijnew->maxnz = aijnew->nz = ainew[n] - 1; 572 (*fact)->factor = FACTOR_LU; 573 return 0; 574 } 575