xref: /petsc/src/mat/impls/aij/seq/inode.c (revision 95452b02e12c0ee11232c7ff2b24b568a8e07e43)
14c1414c8SBarry Smith 
24c1414c8SBarry Smith /*
34c1414c8SBarry Smith   This file provides high performance routines for the Inode format (compressed sparse row)
44c1414c8SBarry Smith   by taking advantage of rows with identical nonzero structure (I-nodes).
54c1414c8SBarry Smith */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h>
74c1414c8SBarry Smith 
8470880abSPatrick Sanan static PetscErrorCode MatCreateColInode_Private(Mat A,PetscInt *size,PetscInt **ns)
94c1414c8SBarry Smith {
104c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
114c1414c8SBarry Smith   PetscErrorCode ierr;
124c1414c8SBarry Smith   PetscInt       i,count,m,n,min_mn,*ns_row,*ns_col;
134c1414c8SBarry Smith 
144c1414c8SBarry Smith   PetscFunctionBegin;
15d0f46423SBarry Smith   n      = A->cmap->n;
16d0f46423SBarry Smith   m      = A->rmap->n;
174c1414c8SBarry Smith   ns_row = a->inode.size;
184c1414c8SBarry Smith 
194c1414c8SBarry Smith   min_mn = (m < n) ? m : n;
204c1414c8SBarry Smith   if (!ns) {
214c1414c8SBarry Smith     for (count=0,i=0; count<min_mn; count+=ns_row[i],i++) ;
224c1414c8SBarry Smith     for (; count+1 < n; count++,i++) ;
234c1414c8SBarry Smith     if (count < n)  {
244c1414c8SBarry Smith       i++;
254c1414c8SBarry Smith     }
264c1414c8SBarry Smith     *size = i;
274c1414c8SBarry Smith     PetscFunctionReturn(0);
284c1414c8SBarry Smith   }
29854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&ns_col);CHKERRQ(ierr);
304c1414c8SBarry Smith 
314c1414c8SBarry Smith   /* Use the same row structure wherever feasible. */
324c1414c8SBarry Smith   for (count=0,i=0; count<min_mn; count+=ns_row[i],i++) {
334c1414c8SBarry Smith     ns_col[i] = ns_row[i];
344c1414c8SBarry Smith   }
354c1414c8SBarry Smith 
364c1414c8SBarry Smith   /* if m < n; pad up the remainder with inode_limit */
374c1414c8SBarry Smith   for (; count+1 < n; count++,i++) {
384c1414c8SBarry Smith     ns_col[i] = 1;
394c1414c8SBarry Smith   }
404c1414c8SBarry Smith   /* The last node is the odd ball. padd it up with the remaining rows; */
414c1414c8SBarry Smith   if (count < n) {
424c1414c8SBarry Smith     ns_col[i] = n - count;
434c1414c8SBarry Smith     i++;
444c1414c8SBarry Smith   } else if (count > n) {
454c1414c8SBarry Smith     /* Adjust for the over estimation */
464c1414c8SBarry Smith     ns_col[i-1] += n - count;
474c1414c8SBarry Smith   }
484c1414c8SBarry Smith   *size = i;
494c1414c8SBarry Smith   *ns   = ns_col;
504c1414c8SBarry Smith   PetscFunctionReturn(0);
514c1414c8SBarry Smith }
524c1414c8SBarry Smith 
534c1414c8SBarry Smith 
544c1414c8SBarry Smith /*
554c1414c8SBarry Smith       This builds symmetric version of nonzero structure,
564c1414c8SBarry Smith */
571a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Symmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
584c1414c8SBarry Smith {
594c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
604c1414c8SBarry Smith   PetscErrorCode ierr;
618758e1faSBarry Smith   PetscInt       *work,*ia,*ja,nz,nslim_row,nslim_col,m,row,col,n;
628758e1faSBarry Smith   PetscInt       *tns,*tvc,*ns_row = a->inode.size,*ns_col,nsz,i1,i2;
638758e1faSBarry Smith   const PetscInt *j,*jmax,*ai= a->i,*aj = a->j;
644c1414c8SBarry Smith 
654c1414c8SBarry Smith   PetscFunctionBegin;
664c1414c8SBarry Smith   nslim_row = a->inode.node_count;
67d0f46423SBarry Smith   m         = A->rmap->n;
68d0f46423SBarry Smith   n         = A->cmap->n;
69e32f2f54SBarry Smith   if (m != n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRowIJ_SeqAIJ_Inode_Symmetric: Matrix should be square");
704c1414c8SBarry Smith 
714c1414c8SBarry Smith   /* Use the row_inode as column_inode */
724c1414c8SBarry Smith   nslim_col = nslim_row;
734c1414c8SBarry Smith   ns_col    = ns_row;
744c1414c8SBarry Smith 
754c1414c8SBarry Smith   /* allocate space for reformated inode structure */
76854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col+1,&tns);CHKERRQ(ierr);
77854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tvc);CHKERRQ(ierr);
784c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1]+ ns_row[i1];
794c1414c8SBarry Smith 
804c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
814c1414c8SBarry Smith     nsz = ns_col[i1];
822205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
834c1414c8SBarry Smith   }
844c1414c8SBarry Smith   /* allocate space for row pointers */
85854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&ia);CHKERRQ(ierr);
864c1414c8SBarry Smith   *iia = ia;
874c1414c8SBarry Smith   ierr = PetscMemzero(ia,(nslim_row+1)*sizeof(PetscInt));CHKERRQ(ierr);
88854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&work);CHKERRQ(ierr);
894c1414c8SBarry Smith 
904c1414c8SBarry Smith   /* determine the number of columns in each row */
914c1414c8SBarry Smith   ia[0] = oshift;
924c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
934c1414c8SBarry Smith 
944c1414c8SBarry Smith     j    = aj + ai[row] + ishift;
954c1414c8SBarry Smith     jmax = aj + ai[row+1] + ishift;
9683fed2edSSatish Balay     if (j==jmax) continue; /* empty row */
974c1414c8SBarry Smith     col  = *j++ + ishift;
984c1414c8SBarry Smith     i2   = tvc[col];
994c1414c8SBarry Smith     while (i2<i1 && j<jmax) { /* 1.[-xx-d-xx--] 2.[-xx-------],off-diagonal elemets */
1004c1414c8SBarry Smith       ia[i1+1]++;
1014c1414c8SBarry Smith       ia[i2+1]++;
1024c1414c8SBarry Smith       i2++;                     /* Start col of next node */
10390d2dec7SBarry Smith       while ((j<jmax) && ((col=*j+ishift)<tns[i2])) ++j;
1044c1414c8SBarry Smith       i2 = tvc[col];
1054c1414c8SBarry Smith     }
1064c1414c8SBarry Smith     if (i2 == i1) ia[i2+1]++;    /* now the diagonal element */
1074c1414c8SBarry Smith   }
1084c1414c8SBarry Smith 
1094c1414c8SBarry Smith   /* shift ia[i] to point to next row */
1104c1414c8SBarry Smith   for (i1=1; i1<nslim_row+1; i1++) {
1114c1414c8SBarry Smith     row        = ia[i1-1];
1124c1414c8SBarry Smith     ia[i1]    += row;
1134c1414c8SBarry Smith     work[i1-1] = row - oshift;
1144c1414c8SBarry Smith   }
1154c1414c8SBarry Smith 
1164c1414c8SBarry Smith   /* allocate space for column pointers */
1174c1414c8SBarry Smith   nz   = ia[nslim_row] + (!ishift);
118785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
1194c1414c8SBarry Smith   *jja = ja;
1204c1414c8SBarry Smith 
1214c1414c8SBarry Smith   /* loop over lower triangular part putting into ja */
1224c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row += ns_row[i1],i1++) {
1234c1414c8SBarry Smith     j    = aj + ai[row] + ishift;
1244c1414c8SBarry Smith     jmax = aj + ai[row+1] + ishift;
12583fed2edSSatish Balay     if (j==jmax) continue; /* empty row */
1264c1414c8SBarry Smith     col  = *j++ + ishift;
1274c1414c8SBarry Smith     i2   = tvc[col];
1284c1414c8SBarry Smith     while (i2<i1 && j<jmax) {
1294c1414c8SBarry Smith       ja[work[i2]++] = i1 + oshift;
1304c1414c8SBarry Smith       ja[work[i1]++] = i2 + oshift;
1314c1414c8SBarry Smith       ++i2;
13290d2dec7SBarry Smith       while ((j<jmax) && ((col=*j+ishift)< tns[i2])) ++j; /* Skip rest col indices in this node */
1334c1414c8SBarry Smith       i2 = tvc[col];
1344c1414c8SBarry Smith     }
1354c1414c8SBarry Smith     if (i2 == i1) ja[work[i1]++] = i2 + oshift;
1364c1414c8SBarry Smith 
1374c1414c8SBarry Smith   }
1384c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
1394c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
1404c1414c8SBarry Smith   ierr = PetscFree(tvc);CHKERRQ(ierr);
1414c1414c8SBarry Smith   PetscFunctionReturn(0);
1424c1414c8SBarry Smith }
1434c1414c8SBarry Smith 
1444c1414c8SBarry Smith /*
1454c1414c8SBarry Smith       This builds nonsymmetric version of nonzero structure,
1464c1414c8SBarry Smith */
1471a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
1484c1414c8SBarry Smith {
1494c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
1504c1414c8SBarry Smith   PetscErrorCode ierr;
1518758e1faSBarry Smith   PetscInt       *work,*ia,*ja,nz,nslim_row,n,row,col,*ns_col,nslim_col;
1528758e1faSBarry Smith   PetscInt       *tns,*tvc,nsz,i1,i2;
1538758e1faSBarry Smith   const PetscInt *j,*ai= a->i,*aj = a->j,*ns_row = a->inode.size;
1544c1414c8SBarry Smith 
1554c1414c8SBarry Smith   PetscFunctionBegin;
1564c1414c8SBarry Smith   nslim_row = a->inode.node_count;
157d0f46423SBarry Smith   n         = A->cmap->n;
1584c1414c8SBarry Smith 
1594c1414c8SBarry Smith   /* Create The column_inode for this matrix */
160470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,&nslim_col,&ns_col);CHKERRQ(ierr);
1614c1414c8SBarry Smith 
1624c1414c8SBarry Smith   /* allocate space for reformated column_inode structure */
163854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col +1,&tns);CHKERRQ(ierr);
164854ce69bSBarry Smith   ierr = PetscMalloc1(n + 1,&tvc);CHKERRQ(ierr);
1654c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1] + ns_col[i1];
1664c1414c8SBarry Smith 
1674c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
1684c1414c8SBarry Smith     nsz = ns_col[i1];
1692205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
1704c1414c8SBarry Smith   }
1714c1414c8SBarry Smith   /* allocate space for row pointers */
172854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&ia);CHKERRQ(ierr);
1734c1414c8SBarry Smith   *iia = ia;
1744c1414c8SBarry Smith   ierr = PetscMemzero(ia,(nslim_row+1)*sizeof(PetscInt));CHKERRQ(ierr);
175854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&work);CHKERRQ(ierr);
1764c1414c8SBarry Smith 
1774c1414c8SBarry Smith   /* determine the number of columns in each row */
1784c1414c8SBarry Smith   ia[0] = oshift;
1794c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
1804c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
18183fed2edSSatish Balay     nz  = ai[row+1] - ai[row];
18283fed2edSSatish Balay     if (!nz) continue; /* empty row */
1834c1414c8SBarry Smith     col = *j++ + ishift;
1844c1414c8SBarry Smith     i2  = tvc[col];
1854c1414c8SBarry Smith     while (nz-- > 0) {           /* off-diagonal elemets */
1864c1414c8SBarry Smith       ia[i1+1]++;
1874c1414c8SBarry Smith       i2++;                     /* Start col of next node */
188a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
1894c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
1904c1414c8SBarry Smith     }
1914c1414c8SBarry Smith   }
1924c1414c8SBarry Smith 
1934c1414c8SBarry Smith   /* shift ia[i] to point to next row */
1944c1414c8SBarry Smith   for (i1=1; i1<nslim_row+1; i1++) {
1954c1414c8SBarry Smith     row        = ia[i1-1];
1964c1414c8SBarry Smith     ia[i1]    += row;
1974c1414c8SBarry Smith     work[i1-1] = row - oshift;
1984c1414c8SBarry Smith   }
1994c1414c8SBarry Smith 
2004c1414c8SBarry Smith   /* allocate space for column pointers */
2014c1414c8SBarry Smith   nz   = ia[nslim_row] + (!ishift);
202785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
2034c1414c8SBarry Smith   *jja = ja;
2044c1414c8SBarry Smith 
2054c1414c8SBarry Smith   /* loop over matrix putting into ja */
2064c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
2074c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
20883fed2edSSatish Balay     nz  = ai[row+1] - ai[row];
20983fed2edSSatish Balay     if (!nz) continue; /* empty row */
2104c1414c8SBarry Smith     col = *j++ + ishift;
2114c1414c8SBarry Smith     i2  = tvc[col];
2124c1414c8SBarry Smith     while (nz-- > 0) {
2134c1414c8SBarry Smith       ja[work[i1]++] = i2 + oshift;
2144c1414c8SBarry Smith       ++i2;
215a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
2164c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
2174c1414c8SBarry Smith     }
2184c1414c8SBarry Smith   }
2194c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
2204c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
2214c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
2224c1414c8SBarry Smith   ierr = PetscFree(tvc);CHKERRQ(ierr);
2234c1414c8SBarry Smith   PetscFunctionReturn(0);
2244c1414c8SBarry Smith }
2254c1414c8SBarry Smith 
2261a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
2274c1414c8SBarry Smith {
2284c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
2294c1414c8SBarry Smith   PetscErrorCode ierr;
2304c1414c8SBarry Smith 
2314c1414c8SBarry Smith   PetscFunctionBegin;
2324c1414c8SBarry Smith   *n = a->inode.node_count;
2334c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
2348f7157efSSatish Balay   if (!blockcompressed) {
2358f7157efSSatish Balay     ierr = MatGetRowIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
2368f7157efSSatish Balay   } else if (symmetric) {
2374108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Symmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
2384c1414c8SBarry Smith   } else {
2394108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
2404c1414c8SBarry Smith   }
2414c1414c8SBarry Smith   PetscFunctionReturn(0);
2424c1414c8SBarry Smith }
2434c1414c8SBarry Smith 
2441a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
2454c1414c8SBarry Smith {
2464c1414c8SBarry Smith   PetscErrorCode ierr;
2474c1414c8SBarry Smith 
2484c1414c8SBarry Smith   PetscFunctionBegin;
2494c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
2508f7157efSSatish Balay 
2518f7157efSSatish Balay   if (!blockcompressed) {
2528f7157efSSatish Balay     ierr = MatRestoreRowIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
2538f7157efSSatish Balay   } else {
2544c1414c8SBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
2554c1414c8SBarry Smith     ierr = PetscFree(*ja);CHKERRQ(ierr);
2568f7157efSSatish Balay   }
2574c1414c8SBarry Smith   PetscFunctionReturn(0);
2584c1414c8SBarry Smith }
2594c1414c8SBarry Smith 
2604c1414c8SBarry Smith /* ----------------------------------------------------------- */
2614c1414c8SBarry Smith 
2621a83f524SJed Brown static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
2634c1414c8SBarry Smith {
2644c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
2654c1414c8SBarry Smith   PetscErrorCode ierr;
2664c1414c8SBarry Smith   PetscInt       *work,*ia,*ja,*j,nz,nslim_row, n,row,col,*ns_col,nslim_col;
2674c1414c8SBarry Smith   PetscInt       *tns,*tvc,*ns_row = a->inode.size,nsz,i1,i2,*ai= a->i,*aj = a->j;
2684c1414c8SBarry Smith 
2694c1414c8SBarry Smith   PetscFunctionBegin;
2704c1414c8SBarry Smith   nslim_row = a->inode.node_count;
271d0f46423SBarry Smith   n         = A->cmap->n;
2724c1414c8SBarry Smith 
2734c1414c8SBarry Smith   /* Create The column_inode for this matrix */
274470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,&nslim_col,&ns_col);CHKERRQ(ierr);
2754c1414c8SBarry Smith 
2764c1414c8SBarry Smith   /* allocate space for reformated column_inode structure */
277854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col + 1,&tns);CHKERRQ(ierr);
278854ce69bSBarry Smith   ierr = PetscMalloc1(n + 1,&tvc);CHKERRQ(ierr);
2794c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1] + ns_col[i1];
2804c1414c8SBarry Smith 
2814c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
2824c1414c8SBarry Smith     nsz = ns_col[i1];
2832205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
2844c1414c8SBarry Smith   }
2854c1414c8SBarry Smith   /* allocate space for column pointers */
286854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col+1,&ia);CHKERRQ(ierr);
2874c1414c8SBarry Smith   *iia = ia;
2884c1414c8SBarry Smith   ierr = PetscMemzero(ia,(nslim_col+1)*sizeof(PetscInt));CHKERRQ(ierr);
289854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col+1,&work);CHKERRQ(ierr);
2904c1414c8SBarry Smith 
2914c1414c8SBarry Smith   /* determine the number of columns in each row */
2924c1414c8SBarry Smith   ia[0] = oshift;
2934c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
2944c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
2954c1414c8SBarry Smith     col = *j++ + ishift;
2964c1414c8SBarry Smith     i2  = tvc[col];
2974c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
2984c1414c8SBarry Smith     while (nz-- > 0) {           /* off-diagonal elemets */
2994c1414c8SBarry Smith       /* ia[i1+1]++; */
3004c1414c8SBarry Smith       ia[i2+1]++;
3014c1414c8SBarry Smith       i2++;
302a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
3034c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
3044c1414c8SBarry Smith     }
3054c1414c8SBarry Smith   }
3064c1414c8SBarry Smith 
3074c1414c8SBarry Smith   /* shift ia[i] to point to next col */
3084c1414c8SBarry Smith   for (i1=1; i1<nslim_col+1; i1++) {
3094c1414c8SBarry Smith     col        = ia[i1-1];
3104c1414c8SBarry Smith     ia[i1]    += col;
3114c1414c8SBarry Smith     work[i1-1] = col - oshift;
3124c1414c8SBarry Smith   }
3134c1414c8SBarry Smith 
3144c1414c8SBarry Smith   /* allocate space for column pointers */
3154c1414c8SBarry Smith   nz   = ia[nslim_col] + (!ishift);
316785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
3174c1414c8SBarry Smith   *jja = ja;
3184c1414c8SBarry Smith 
3194c1414c8SBarry Smith   /* loop over matrix putting into ja */
3204c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
3214c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
3224c1414c8SBarry Smith     col = *j++ + ishift;
3234c1414c8SBarry Smith     i2  = tvc[col];
3244c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
3254c1414c8SBarry Smith     while (nz-- > 0) {
3264c1414c8SBarry Smith       /* ja[work[i1]++] = i2 + oshift; */
3274c1414c8SBarry Smith       ja[work[i2]++] = i1 + oshift;
3284c1414c8SBarry Smith       i2++;
329a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
3304c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
3314c1414c8SBarry Smith     }
3324c1414c8SBarry Smith   }
3334c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
3344c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
3354c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
3364c1414c8SBarry Smith   ierr = PetscFree(tvc);CHKERRQ(ierr);
3374c1414c8SBarry Smith   PetscFunctionReturn(0);
3384c1414c8SBarry Smith }
3394c1414c8SBarry Smith 
3401a83f524SJed Brown static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
3414c1414c8SBarry Smith {
3424c1414c8SBarry Smith   PetscErrorCode ierr;
3434c1414c8SBarry Smith 
3444c1414c8SBarry Smith   PetscFunctionBegin;
345470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,n,NULL);CHKERRQ(ierr);
3464c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
3474c1414c8SBarry Smith 
3488f7157efSSatish Balay   if (!blockcompressed) {
3498f7157efSSatish Balay     ierr = MatGetColumnIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
3508f7157efSSatish Balay   } else if (symmetric) {
3514c1414c8SBarry Smith     /* Since the indices are symmetric it does'nt matter */
3524108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Symmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
3534c1414c8SBarry Smith   } else {
3544108e4d5SBarry Smith     ierr = MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
3554c1414c8SBarry Smith   }
3564c1414c8SBarry Smith   PetscFunctionReturn(0);
3574c1414c8SBarry Smith }
3584c1414c8SBarry Smith 
3591a83f524SJed Brown static PetscErrorCode MatRestoreColumnIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
3604c1414c8SBarry Smith {
3614c1414c8SBarry Smith   PetscErrorCode ierr;
3624c1414c8SBarry Smith 
3634c1414c8SBarry Smith   PetscFunctionBegin;
3644c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
3658f7157efSSatish Balay   if (!blockcompressed) {
3668f7157efSSatish Balay     ierr = MatRestoreColumnIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
3678f7157efSSatish Balay   } else {
3684c1414c8SBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
3694c1414c8SBarry Smith     ierr = PetscFree(*ja);CHKERRQ(ierr);
3708f7157efSSatish Balay   }
3714c1414c8SBarry Smith   PetscFunctionReturn(0);
3724c1414c8SBarry Smith }
3734c1414c8SBarry Smith 
3744c1414c8SBarry Smith /* ----------------------------------------------------------- */
3754c1414c8SBarry Smith 
3764108e4d5SBarry Smith static PetscErrorCode MatMult_SeqAIJ_Inode(Mat A,Vec xx,Vec yy)
3774c1414c8SBarry Smith {
3784c1414c8SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
3794c1414c8SBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5,tmp0,tmp1;
380d9fead3dSBarry Smith   PetscScalar       *y;
381dd6ea824SBarry Smith   const PetscScalar *x;
382dd6ea824SBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5;
3834c1414c8SBarry Smith   PetscErrorCode    ierr;
3848758e1faSBarry Smith   PetscInt          i1,i2,n,i,row,node_max,nsz,sz,nonzerorow=0;
3858758e1faSBarry Smith   const PetscInt    *idx,*ns,*ii;
3864c1414c8SBarry Smith 
3874c1414c8SBarry Smith #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
3884c1414c8SBarry Smith #pragma disjoint(*x,*y,*v1,*v2,*v3,*v4,*v5)
3894c1414c8SBarry Smith #endif
3904c1414c8SBarry Smith 
3914c1414c8SBarry Smith   PetscFunctionBegin;
392e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
3934c1414c8SBarry Smith   node_max = a->inode.node_count;
3944c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
3953649974fSBarry Smith   ierr     = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
3964c1414c8SBarry Smith   ierr     = VecGetArray(yy,&y);CHKERRQ(ierr);
3974c1414c8SBarry Smith   idx      = a->j;
3984c1414c8SBarry Smith   v1       = a->a;
3994c1414c8SBarry Smith   ii       = a->i;
4004c1414c8SBarry Smith 
4014c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
4024c1414c8SBarry Smith     nsz         = ns[i];
4034c1414c8SBarry Smith     n           = ii[1] - ii[0];
40498c9bda7SSatish Balay     nonzerorow += (n>0)*nsz;
4054c1414c8SBarry Smith     ii         += nsz;
40650d8bf02SJed Brown     PetscPrefetchBlock(idx+nsz*n,n,0,PETSC_PREFETCH_HINT_NTA);    /* Prefetch the indices for the block row after the current one */
40750d8bf02SJed Brown     PetscPrefetchBlock(v1+nsz*n,nsz*n,0,PETSC_PREFETCH_HINT_NTA); /* Prefetch the values for the block row after the current one  */
4084c1414c8SBarry Smith     sz = n;                     /* No of non zeros in this row */
4094c1414c8SBarry Smith                                 /* Switch on the size of Node */
4104c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
4114c1414c8SBarry Smith     case 1:
41275567043SBarry Smith       sum1 = 0.;
4134c1414c8SBarry Smith 
4144c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4154c1414c8SBarry Smith         i1    = idx[0];         /* The instructions are ordered to */
4164c1414c8SBarry Smith         i2    = idx[1];         /* make the compiler's job easy */
4174c1414c8SBarry Smith         idx  += 2;
4184c1414c8SBarry Smith         tmp0  = x[i1];
4194c1414c8SBarry Smith         tmp1  = x[i2];
4204c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4214c1414c8SBarry Smith       }
4224c1414c8SBarry Smith 
4234c1414c8SBarry Smith       if (n == sz-1) {          /* Take care of the last nonzero  */
4244c1414c8SBarry Smith         tmp0  = x[*idx++];
4254c1414c8SBarry Smith         sum1 += *v1++ *tmp0;
4264c1414c8SBarry Smith       }
4274c1414c8SBarry Smith       y[row++]=sum1;
4284c1414c8SBarry Smith       break;
4294c1414c8SBarry Smith     case 2:
43075567043SBarry Smith       sum1 = 0.;
43175567043SBarry Smith       sum2 = 0.;
4324c1414c8SBarry Smith       v2   = v1 + n;
4334c1414c8SBarry Smith 
4344c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4354c1414c8SBarry Smith         i1    = idx[0];
4364c1414c8SBarry Smith         i2    = idx[1];
4374c1414c8SBarry Smith         idx  += 2;
4384c1414c8SBarry Smith         tmp0  = x[i1];
4394c1414c8SBarry Smith         tmp1  = x[i2];
4404c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4414c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
4424c1414c8SBarry Smith       }
4434c1414c8SBarry Smith       if (n == sz-1) {
4444c1414c8SBarry Smith         tmp0  = x[*idx++];
4454c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
4464c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
4474c1414c8SBarry Smith       }
4484c1414c8SBarry Smith       y[row++]=sum1;
4494c1414c8SBarry Smith       y[row++]=sum2;
4504c1414c8SBarry Smith       v1      =v2;              /* Since the next block to be processed starts there*/
4514c1414c8SBarry Smith       idx    +=sz;
4524c1414c8SBarry Smith       break;
4534c1414c8SBarry Smith     case 3:
45475567043SBarry Smith       sum1 = 0.;
45575567043SBarry Smith       sum2 = 0.;
45675567043SBarry Smith       sum3 = 0.;
4574c1414c8SBarry Smith       v2   = v1 + n;
4584c1414c8SBarry Smith       v3   = v2 + n;
4594c1414c8SBarry Smith 
4604c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4614c1414c8SBarry Smith         i1    = idx[0];
4624c1414c8SBarry Smith         i2    = idx[1];
4634c1414c8SBarry Smith         idx  += 2;
4644c1414c8SBarry Smith         tmp0  = x[i1];
4654c1414c8SBarry Smith         tmp1  = x[i2];
4664c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4674c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
4684c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
4694c1414c8SBarry Smith       }
4704c1414c8SBarry Smith       if (n == sz-1) {
4714c1414c8SBarry Smith         tmp0  = x[*idx++];
4724c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
4734c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
4744c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
4754c1414c8SBarry Smith       }
4764c1414c8SBarry Smith       y[row++]=sum1;
4774c1414c8SBarry Smith       y[row++]=sum2;
4784c1414c8SBarry Smith       y[row++]=sum3;
4794c1414c8SBarry Smith       v1      =v3;              /* Since the next block to be processed starts there*/
4804c1414c8SBarry Smith       idx    +=2*sz;
4814c1414c8SBarry Smith       break;
4824c1414c8SBarry Smith     case 4:
48375567043SBarry Smith       sum1 = 0.;
48475567043SBarry Smith       sum2 = 0.;
48575567043SBarry Smith       sum3 = 0.;
48675567043SBarry Smith       sum4 = 0.;
4874c1414c8SBarry Smith       v2   = v1 + n;
4884c1414c8SBarry Smith       v3   = v2 + n;
4894c1414c8SBarry Smith       v4   = v3 + n;
4904c1414c8SBarry Smith 
4914c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4924c1414c8SBarry Smith         i1    = idx[0];
4934c1414c8SBarry Smith         i2    = idx[1];
4944c1414c8SBarry Smith         idx  += 2;
4954c1414c8SBarry Smith         tmp0  = x[i1];
4964c1414c8SBarry Smith         tmp1  = x[i2];
4974c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
4984c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
4994c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
5004c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
5014c1414c8SBarry Smith       }
5024c1414c8SBarry Smith       if (n == sz-1) {
5034c1414c8SBarry Smith         tmp0  = x[*idx++];
5044c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
5054c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
5064c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
5074c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
5084c1414c8SBarry Smith       }
5094c1414c8SBarry Smith       y[row++]=sum1;
5104c1414c8SBarry Smith       y[row++]=sum2;
5114c1414c8SBarry Smith       y[row++]=sum3;
5124c1414c8SBarry Smith       y[row++]=sum4;
5134c1414c8SBarry Smith       v1      =v4;              /* Since the next block to be processed starts there*/
5144c1414c8SBarry Smith       idx    +=3*sz;
5154c1414c8SBarry Smith       break;
5164c1414c8SBarry Smith     case 5:
51775567043SBarry Smith       sum1 = 0.;
51875567043SBarry Smith       sum2 = 0.;
51975567043SBarry Smith       sum3 = 0.;
52075567043SBarry Smith       sum4 = 0.;
52175567043SBarry Smith       sum5 = 0.;
5224c1414c8SBarry Smith       v2   = v1 + n;
5234c1414c8SBarry Smith       v3   = v2 + n;
5244c1414c8SBarry Smith       v4   = v3 + n;
5254c1414c8SBarry Smith       v5   = v4 + n;
5264c1414c8SBarry Smith 
5274c1414c8SBarry Smith       for (n = 0; n<sz-1; n+=2) {
5284c1414c8SBarry Smith         i1    = idx[0];
5294c1414c8SBarry Smith         i2    = idx[1];
5304c1414c8SBarry Smith         idx  += 2;
5314c1414c8SBarry Smith         tmp0  = x[i1];
5324c1414c8SBarry Smith         tmp1  = x[i2];
5334c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
5344c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
5354c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
5364c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
5374c1414c8SBarry Smith         sum5 += v5[0] * tmp0 + v5[1] *tmp1; v5 += 2;
5384c1414c8SBarry Smith       }
5394c1414c8SBarry Smith       if (n == sz-1) {
5404c1414c8SBarry Smith         tmp0  = x[*idx++];
5414c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
5424c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
5434c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
5444c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
5454c1414c8SBarry Smith         sum5 += *v5++ * tmp0;
5464c1414c8SBarry Smith       }
5474c1414c8SBarry Smith       y[row++]=sum1;
5484c1414c8SBarry Smith       y[row++]=sum2;
5494c1414c8SBarry Smith       y[row++]=sum3;
5504c1414c8SBarry Smith       y[row++]=sum4;
5514c1414c8SBarry Smith       y[row++]=sum5;
5524c1414c8SBarry Smith       v1      =v5;       /* Since the next block to be processed starts there */
5534c1414c8SBarry Smith       idx    +=4*sz;
5544c1414c8SBarry Smith       break;
5554c1414c8SBarry Smith     default:
556e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported");
5574c1414c8SBarry Smith     }
5584c1414c8SBarry Smith   }
5593649974fSBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5604c1414c8SBarry Smith   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
561dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz - nonzerorow);CHKERRQ(ierr);
5624c1414c8SBarry Smith   PetscFunctionReturn(0);
5634c1414c8SBarry Smith }
5644c1414c8SBarry Smith /* ----------------------------------------------------------- */
5654108e4d5SBarry Smith /* Almost same code as the MatMult_SeqAIJ_Inode() */
5664108e4d5SBarry Smith static PetscErrorCode MatMultAdd_SeqAIJ_Inode(Mat A,Vec xx,Vec zz,Vec yy)
5674c1414c8SBarry Smith {
5684c1414c8SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
5694c1414c8SBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5,tmp0,tmp1;
5708758e1faSBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5;
5718758e1faSBarry Smith   const PetscScalar *x;
5728758e1faSBarry Smith   PetscScalar       *y,*z,*zt;
5734c1414c8SBarry Smith   PetscErrorCode    ierr;
5748758e1faSBarry Smith   PetscInt          i1,i2,n,i,row,node_max,nsz,sz;
5758758e1faSBarry Smith   const PetscInt    *idx,*ns,*ii;
5764c1414c8SBarry Smith 
5774c1414c8SBarry Smith   PetscFunctionBegin;
578e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
5794c1414c8SBarry Smith   node_max = a->inode.node_count;
5804c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
5812205254eSKarl Rupp 
5828758e1faSBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
583f95e332cSBarry Smith   ierr = VecGetArrayPair(zz,yy,&z,&y);CHKERRQ(ierr);
5844c1414c8SBarry Smith   zt = z;
5854c1414c8SBarry Smith 
5864c1414c8SBarry Smith   idx = a->j;
5874c1414c8SBarry Smith   v1  = a->a;
5884c1414c8SBarry Smith   ii  = a->i;
5894c1414c8SBarry Smith 
5904c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
5914c1414c8SBarry Smith     nsz = ns[i];
5924c1414c8SBarry Smith     n   = ii[1] - ii[0];
5934c1414c8SBarry Smith     ii += nsz;
5944c1414c8SBarry Smith     sz  = n;                    /* No of non zeros in this row */
5954c1414c8SBarry Smith                                 /* Switch on the size of Node */
5964c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
5974c1414c8SBarry Smith     case 1:
5984c1414c8SBarry Smith       sum1 = *zt++;
5994c1414c8SBarry Smith 
6004c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6014c1414c8SBarry Smith         i1    = idx[0];         /* The instructions are ordered to */
6024c1414c8SBarry Smith         i2    = idx[1];         /* make the compiler's job easy */
6034c1414c8SBarry Smith         idx  += 2;
6044c1414c8SBarry Smith         tmp0  = x[i1];
6054c1414c8SBarry Smith         tmp1  = x[i2];
6064c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6074c1414c8SBarry Smith       }
6084c1414c8SBarry Smith 
6094c1414c8SBarry Smith       if (n   == sz-1) {          /* Take care of the last nonzero  */
6104c1414c8SBarry Smith         tmp0  = x[*idx++];
6114c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6124c1414c8SBarry Smith       }
6134c1414c8SBarry Smith       y[row++]=sum1;
6144c1414c8SBarry Smith       break;
6154c1414c8SBarry Smith     case 2:
6164c1414c8SBarry Smith       sum1 = *zt++;
6174c1414c8SBarry Smith       sum2 = *zt++;
6184c1414c8SBarry Smith       v2   = v1 + n;
6194c1414c8SBarry Smith 
6204c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6214c1414c8SBarry Smith         i1    = idx[0];
6224c1414c8SBarry Smith         i2    = idx[1];
6234c1414c8SBarry Smith         idx  += 2;
6244c1414c8SBarry Smith         tmp0  = x[i1];
6254c1414c8SBarry Smith         tmp1  = x[i2];
6264c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6274c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
6284c1414c8SBarry Smith       }
6294c1414c8SBarry Smith       if (n   == sz-1) {
6304c1414c8SBarry Smith         tmp0  = x[*idx++];
6314c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6324c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6334c1414c8SBarry Smith       }
6344c1414c8SBarry Smith       y[row++]=sum1;
6354c1414c8SBarry Smith       y[row++]=sum2;
6364c1414c8SBarry Smith       v1      =v2;              /* Since the next block to be processed starts there*/
6374c1414c8SBarry Smith       idx    +=sz;
6384c1414c8SBarry Smith       break;
6394c1414c8SBarry Smith     case 3:
6404c1414c8SBarry Smith       sum1 = *zt++;
6414c1414c8SBarry Smith       sum2 = *zt++;
6424c1414c8SBarry Smith       sum3 = *zt++;
6434c1414c8SBarry Smith       v2   = v1 + n;
6444c1414c8SBarry Smith       v3   = v2 + n;
6454c1414c8SBarry Smith 
6464c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6474c1414c8SBarry Smith         i1    = idx[0];
6484c1414c8SBarry Smith         i2    = idx[1];
6494c1414c8SBarry Smith         idx  += 2;
6504c1414c8SBarry Smith         tmp0  = x[i1];
6514c1414c8SBarry Smith         tmp1  = x[i2];
6524c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6534c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
6544c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
6554c1414c8SBarry Smith       }
6564c1414c8SBarry Smith       if (n == sz-1) {
6574c1414c8SBarry Smith         tmp0  = x[*idx++];
6584c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6594c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6604c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
6614c1414c8SBarry Smith       }
6624c1414c8SBarry Smith       y[row++]=sum1;
6634c1414c8SBarry Smith       y[row++]=sum2;
6644c1414c8SBarry Smith       y[row++]=sum3;
6654c1414c8SBarry Smith       v1      =v3;              /* Since the next block to be processed starts there*/
6664c1414c8SBarry Smith       idx    +=2*sz;
6674c1414c8SBarry Smith       break;
6684c1414c8SBarry Smith     case 4:
6694c1414c8SBarry Smith       sum1 = *zt++;
6704c1414c8SBarry Smith       sum2 = *zt++;
6714c1414c8SBarry Smith       sum3 = *zt++;
6724c1414c8SBarry Smith       sum4 = *zt++;
6734c1414c8SBarry Smith       v2   = v1 + n;
6744c1414c8SBarry Smith       v3   = v2 + n;
6754c1414c8SBarry Smith       v4   = v3 + n;
6764c1414c8SBarry Smith 
6774c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6784c1414c8SBarry Smith         i1    = idx[0];
6794c1414c8SBarry Smith         i2    = idx[1];
6804c1414c8SBarry Smith         idx  += 2;
6814c1414c8SBarry Smith         tmp0  = x[i1];
6824c1414c8SBarry Smith         tmp1  = x[i2];
6834c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
6844c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
6854c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
6864c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
6874c1414c8SBarry Smith       }
6884c1414c8SBarry Smith       if (n == sz-1) {
6894c1414c8SBarry Smith         tmp0  = x[*idx++];
6904c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6914c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6924c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
6934c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
6944c1414c8SBarry Smith       }
6954c1414c8SBarry Smith       y[row++]=sum1;
6964c1414c8SBarry Smith       y[row++]=sum2;
6974c1414c8SBarry Smith       y[row++]=sum3;
6984c1414c8SBarry Smith       y[row++]=sum4;
6994c1414c8SBarry Smith       v1      =v4;              /* Since the next block to be processed starts there*/
7004c1414c8SBarry Smith       idx    +=3*sz;
7014c1414c8SBarry Smith       break;
7024c1414c8SBarry Smith     case 5:
7034c1414c8SBarry Smith       sum1 = *zt++;
7044c1414c8SBarry Smith       sum2 = *zt++;
7054c1414c8SBarry Smith       sum3 = *zt++;
7064c1414c8SBarry Smith       sum4 = *zt++;
7074c1414c8SBarry Smith       sum5 = *zt++;
7084c1414c8SBarry Smith       v2   = v1 + n;
7094c1414c8SBarry Smith       v3   = v2 + n;
7104c1414c8SBarry Smith       v4   = v3 + n;
7114c1414c8SBarry Smith       v5   = v4 + n;
7124c1414c8SBarry Smith 
7134c1414c8SBarry Smith       for (n = 0; n<sz-1; n+=2) {
7144c1414c8SBarry Smith         i1    = idx[0];
7154c1414c8SBarry Smith         i2    = idx[1];
7164c1414c8SBarry Smith         idx  += 2;
7174c1414c8SBarry Smith         tmp0  = x[i1];
7184c1414c8SBarry Smith         tmp1  = x[i2];
7194c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
7204c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
7214c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
7224c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
7234c1414c8SBarry Smith         sum5 += v5[0] * tmp0 + v5[1] *tmp1; v5 += 2;
7244c1414c8SBarry Smith       }
7254c1414c8SBarry Smith       if (n   == sz-1) {
7264c1414c8SBarry Smith         tmp0  = x[*idx++];
7274c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
7284c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
7294c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
7304c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
7314c1414c8SBarry Smith         sum5 += *v5++ * tmp0;
7324c1414c8SBarry Smith       }
7334c1414c8SBarry Smith       y[row++]=sum1;
7344c1414c8SBarry Smith       y[row++]=sum2;
7354c1414c8SBarry Smith       y[row++]=sum3;
7364c1414c8SBarry Smith       y[row++]=sum4;
7374c1414c8SBarry Smith       y[row++]=sum5;
7384c1414c8SBarry Smith       v1      =v5;       /* Since the next block to be processed starts there */
7394c1414c8SBarry Smith       idx    +=4*sz;
7404c1414c8SBarry Smith       break;
7414c1414c8SBarry Smith     default:
742e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported");
7434c1414c8SBarry Smith     }
7444c1414c8SBarry Smith   }
7458758e1faSBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
746f95e332cSBarry Smith   ierr = VecRestoreArrayPair(zz,yy,&z,&y);CHKERRQ(ierr);
747dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
7484c1414c8SBarry Smith   PetscFunctionReturn(0);
7494c1414c8SBarry Smith }
7504c1414c8SBarry Smith 
7514c1414c8SBarry Smith /* ----------------------------------------------------------- */
752ad04f41aSHong Zhang PetscErrorCode MatSolve_SeqAIJ_Inode_inplace(Mat A,Vec bb,Vec xx)
7534c1414c8SBarry Smith {
7544c1414c8SBarry Smith   Mat_SeqAIJ        *a    = (Mat_SeqAIJ*)A->data;
7554c1414c8SBarry Smith   IS                iscol = a->col,isrow = a->row;
7564c1414c8SBarry Smith   PetscErrorCode    ierr;
7575d0c19d7SBarry Smith   const PetscInt    *r,*c,*rout,*cout;
7588758e1faSBarry Smith   PetscInt          i,j,n = A->rmap->n,nz;
7598758e1faSBarry Smith   PetscInt          node_max,*ns,row,nsz,aii,i0,i1;
7608758e1faSBarry Smith   const PetscInt    *ai = a->i,*a_j = a->j,*vi,*ad,*aj;
761d9fead3dSBarry Smith   PetscScalar       *x,*tmp,*tmps,tmp0,tmp1;
762d9fead3dSBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5;
763dd6ea824SBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5,*a_a = a->a,*aa;
764dd6ea824SBarry Smith   const PetscScalar *b;
7654c1414c8SBarry Smith 
7664c1414c8SBarry Smith   PetscFunctionBegin;
767e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
7684c1414c8SBarry Smith   node_max = a->inode.node_count;
7694c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
7704c1414c8SBarry Smith 
7713649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
7724c1414c8SBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
7734c1414c8SBarry Smith   tmp  = a->solve_work;
7744c1414c8SBarry Smith 
7754c1414c8SBarry Smith   ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout;
7764c1414c8SBarry Smith   ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1);
7774c1414c8SBarry Smith 
7784c1414c8SBarry Smith   /* forward solve the lower triangular */
7794c1414c8SBarry Smith   tmps = tmp;
7804c1414c8SBarry Smith   aa   = a_a;
7814c1414c8SBarry Smith   aj   = a_j;
7824c1414c8SBarry Smith   ad   = a->diag;
7834c1414c8SBarry Smith 
7844c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
7854c1414c8SBarry Smith     nsz = ns[i];
7864c1414c8SBarry Smith     aii = ai[row];
7874c1414c8SBarry Smith     v1  = aa + aii;
7884c1414c8SBarry Smith     vi  = aj + aii;
7894c1414c8SBarry Smith     nz  = ad[row]- aii;
79026549573SJed Brown     if (i < node_max-1) {
79126549573SJed Brown       /* Prefetch the block after the current one, the prefetch itself can't cause a memory error,
79226549573SJed Brown       * but our indexing to determine it's size could. */
79350d8bf02SJed Brown       PetscPrefetchBlock(aj+ai[row+nsz],ad[row+nsz]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA); /* indices */
79426549573SJed Brown       /* In my tests, it seems to be better to fetch entire rows instead of just the lower-triangular part */
79550d8bf02SJed Brown       PetscPrefetchBlock(aa+ai[row+nsz],ad[row+nsz+ns[i+1]-1]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA);
79626549573SJed Brown       /* for (j=0; j<ns[i+1]; j++) PetscPrefetchBlock(aa+ai[row+nsz+j],ad[row+nsz+j]-ai[row+nsz+j],0,0); */
79726549573SJed Brown     }
7984c1414c8SBarry Smith 
7994c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
8004c1414c8SBarry Smith     case 1:
8014c1414c8SBarry Smith       sum1 = b[*r++];
8024c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8034c1414c8SBarry Smith         i0    = vi[0];
8044c1414c8SBarry Smith         i1    = vi[1];
8054c1414c8SBarry Smith         vi   +=2;
8064c1414c8SBarry Smith         tmp0  = tmps[i0];
8074c1414c8SBarry Smith         tmp1  = tmps[i1];
8084c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8094c1414c8SBarry Smith       }
8104c1414c8SBarry Smith       if (j == nz-1) {
8114c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8124c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8134c1414c8SBarry Smith       }
8144c1414c8SBarry Smith       tmp[row++]=sum1;
8154c1414c8SBarry Smith       break;
8164c1414c8SBarry Smith     case 2:
8174c1414c8SBarry Smith       sum1 = b[*r++];
8184c1414c8SBarry Smith       sum2 = b[*r++];
8194c1414c8SBarry Smith       v2   = aa + ai[row+1];
8204c1414c8SBarry Smith 
8214c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8224c1414c8SBarry Smith         i0    = vi[0];
8234c1414c8SBarry Smith         i1    = vi[1];
8244c1414c8SBarry Smith         vi   +=2;
8254c1414c8SBarry Smith         tmp0  = tmps[i0];
8264c1414c8SBarry Smith         tmp1  = tmps[i1];
8274c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8284c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8294c1414c8SBarry Smith       }
8304c1414c8SBarry Smith       if (j == nz-1) {
8314c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8324c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8334c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8344c1414c8SBarry Smith       }
8354c1414c8SBarry Smith       sum2     -= *v2++ *sum1;
8364c1414c8SBarry Smith       tmp[row++]=sum1;
8374c1414c8SBarry Smith       tmp[row++]=sum2;
8384c1414c8SBarry Smith       break;
8394c1414c8SBarry Smith     case 3:
8404c1414c8SBarry Smith       sum1 = b[*r++];
8414c1414c8SBarry Smith       sum2 = b[*r++];
8424c1414c8SBarry Smith       sum3 = b[*r++];
8434c1414c8SBarry Smith       v2   = aa + ai[row+1];
8444c1414c8SBarry Smith       v3   = aa + ai[row+2];
8454c1414c8SBarry Smith 
8464c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8474c1414c8SBarry Smith         i0    = vi[0];
8484c1414c8SBarry Smith         i1    = vi[1];
8494c1414c8SBarry Smith         vi   +=2;
8504c1414c8SBarry Smith         tmp0  = tmps[i0];
8514c1414c8SBarry Smith         tmp1  = tmps[i1];
8524c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8534c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8544c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
8554c1414c8SBarry Smith       }
8564c1414c8SBarry Smith       if (j == nz-1) {
8574c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8584c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8594c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8604c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
8614c1414c8SBarry Smith       }
8624c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
8634c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
8644c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
8652205254eSKarl Rupp 
8664c1414c8SBarry Smith       tmp[row++]=sum1;
8674c1414c8SBarry Smith       tmp[row++]=sum2;
8684c1414c8SBarry Smith       tmp[row++]=sum3;
8694c1414c8SBarry Smith       break;
8704c1414c8SBarry Smith 
8714c1414c8SBarry Smith     case 4:
8724c1414c8SBarry Smith       sum1 = b[*r++];
8734c1414c8SBarry Smith       sum2 = b[*r++];
8744c1414c8SBarry Smith       sum3 = b[*r++];
8754c1414c8SBarry Smith       sum4 = b[*r++];
8764c1414c8SBarry Smith       v2   = aa + ai[row+1];
8774c1414c8SBarry Smith       v3   = aa + ai[row+2];
8784c1414c8SBarry Smith       v4   = aa + ai[row+3];
8794c1414c8SBarry Smith 
8804c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8814c1414c8SBarry Smith         i0    = vi[0];
8824c1414c8SBarry Smith         i1    = vi[1];
8834c1414c8SBarry Smith         vi   +=2;
8844c1414c8SBarry Smith         tmp0  = tmps[i0];
8854c1414c8SBarry Smith         tmp1  = tmps[i1];
8864c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8874c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8884c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
8894c1414c8SBarry Smith         sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
8904c1414c8SBarry Smith       }
8914c1414c8SBarry Smith       if (j == nz-1) {
8924c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8934c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8944c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8954c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
8964c1414c8SBarry Smith         sum4 -= *v4++ *tmp0;
8974c1414c8SBarry Smith       }
8984c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
8994c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
9004c1414c8SBarry Smith       sum4 -= *v4++ * sum1;
9014c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
9024c1414c8SBarry Smith       sum4 -= *v4++ * sum2;
9034c1414c8SBarry Smith       sum4 -= *v4++ * sum3;
9044c1414c8SBarry Smith 
9054c1414c8SBarry Smith       tmp[row++]=sum1;
9064c1414c8SBarry Smith       tmp[row++]=sum2;
9074c1414c8SBarry Smith       tmp[row++]=sum3;
9084c1414c8SBarry Smith       tmp[row++]=sum4;
9094c1414c8SBarry Smith       break;
9104c1414c8SBarry Smith     case 5:
9114c1414c8SBarry Smith       sum1 = b[*r++];
9124c1414c8SBarry Smith       sum2 = b[*r++];
9134c1414c8SBarry Smith       sum3 = b[*r++];
9144c1414c8SBarry Smith       sum4 = b[*r++];
9154c1414c8SBarry Smith       sum5 = b[*r++];
9164c1414c8SBarry Smith       v2   = aa + ai[row+1];
9174c1414c8SBarry Smith       v3   = aa + ai[row+2];
9184c1414c8SBarry Smith       v4   = aa + ai[row+3];
9194c1414c8SBarry Smith       v5   = aa + ai[row+4];
9204c1414c8SBarry Smith 
9214c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
9224c1414c8SBarry Smith         i0    = vi[0];
9234c1414c8SBarry Smith         i1    = vi[1];
9244c1414c8SBarry Smith         vi   +=2;
9254c1414c8SBarry Smith         tmp0  = tmps[i0];
9264c1414c8SBarry Smith         tmp1  = tmps[i1];
9274c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
9284c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
9294c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
9304c1414c8SBarry Smith         sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
9314c1414c8SBarry Smith         sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
9324c1414c8SBarry Smith       }
9334c1414c8SBarry Smith       if (j == nz-1) {
9344c1414c8SBarry Smith         tmp0  = tmps[*vi++];
9354c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
9364c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
9374c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
9384c1414c8SBarry Smith         sum4 -= *v4++ *tmp0;
9394c1414c8SBarry Smith         sum5 -= *v5++ *tmp0;
9404c1414c8SBarry Smith       }
9414c1414c8SBarry Smith 
9424c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
9434c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
9444c1414c8SBarry Smith       sum4 -= *v4++ * sum1;
9454c1414c8SBarry Smith       sum5 -= *v5++ * sum1;
9464c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
9474c1414c8SBarry Smith       sum4 -= *v4++ * sum2;
9484c1414c8SBarry Smith       sum5 -= *v5++ * sum2;
9494c1414c8SBarry Smith       sum4 -= *v4++ * sum3;
9504c1414c8SBarry Smith       sum5 -= *v5++ * sum3;
9514c1414c8SBarry Smith       sum5 -= *v5++ * sum4;
9524c1414c8SBarry Smith 
9534c1414c8SBarry Smith       tmp[row++]=sum1;
9544c1414c8SBarry Smith       tmp[row++]=sum2;
9554c1414c8SBarry Smith       tmp[row++]=sum3;
9564c1414c8SBarry Smith       tmp[row++]=sum4;
9574c1414c8SBarry Smith       tmp[row++]=sum5;
9584c1414c8SBarry Smith       break;
9594c1414c8SBarry Smith     default:
960e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
9614c1414c8SBarry Smith     }
9624c1414c8SBarry Smith   }
9634c1414c8SBarry Smith   /* backward solve the upper triangular */
9644c1414c8SBarry Smith   for (i=node_max -1,row = n-1; i>=0; i--) {
9654c1414c8SBarry Smith     nsz = ns[i];
9664c1414c8SBarry Smith     aii = ai[row+1] -1;
9674c1414c8SBarry Smith     v1  = aa + aii;
9684c1414c8SBarry Smith     vi  = aj + aii;
9694c1414c8SBarry Smith     nz  = aii- ad[row];
9704c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
9714c1414c8SBarry Smith     case 1:
9724c1414c8SBarry Smith       sum1 = tmp[row];
9734c1414c8SBarry Smith 
9744c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
9754c1414c8SBarry Smith         vi   -=2;
9764c1414c8SBarry Smith         i0    = vi[2];
9774c1414c8SBarry Smith         i1    = vi[1];
9784c1414c8SBarry Smith         tmp0  = tmps[i0];
9794c1414c8SBarry Smith         tmp1  = tmps[i1];
9804c1414c8SBarry Smith         v1   -= 2;
9814c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
9824c1414c8SBarry Smith       }
9834c1414c8SBarry Smith       if (j==1) {
9844c1414c8SBarry Smith         tmp0  = tmps[*vi--];
9854c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
9864c1414c8SBarry Smith       }
9874c1414c8SBarry Smith       x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
9884c1414c8SBarry Smith       break;
9894c1414c8SBarry Smith     case 2:
9904c1414c8SBarry Smith       sum1 = tmp[row];
9914c1414c8SBarry Smith       sum2 = tmp[row -1];
9924c1414c8SBarry Smith       v2   = aa + ai[row]-1;
9934c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
9944c1414c8SBarry Smith         vi   -=2;
9954c1414c8SBarry Smith         i0    = vi[2];
9964c1414c8SBarry Smith         i1    = vi[1];
9974c1414c8SBarry Smith         tmp0  = tmps[i0];
9984c1414c8SBarry Smith         tmp1  = tmps[i1];
9994c1414c8SBarry Smith         v1   -= 2;
10004c1414c8SBarry Smith         v2   -= 2;
10014c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10024c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10034c1414c8SBarry Smith       }
10044c1414c8SBarry Smith       if (j==1) {
10054c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10064c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10074c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10084c1414c8SBarry Smith       }
10094c1414c8SBarry Smith 
10104c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10114c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10124c1414c8SBarry Smith       x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10134c1414c8SBarry Smith       break;
10144c1414c8SBarry Smith     case 3:
10154c1414c8SBarry Smith       sum1 = tmp[row];
10164c1414c8SBarry Smith       sum2 = tmp[row -1];
10174c1414c8SBarry Smith       sum3 = tmp[row -2];
10184c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10194c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10204c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10214c1414c8SBarry Smith         vi   -=2;
10224c1414c8SBarry Smith         i0    = vi[2];
10234c1414c8SBarry Smith         i1    = vi[1];
10244c1414c8SBarry Smith         tmp0  = tmps[i0];
10254c1414c8SBarry Smith         tmp1  = tmps[i1];
10264c1414c8SBarry Smith         v1   -= 2;
10274c1414c8SBarry Smith         v2   -= 2;
10284c1414c8SBarry Smith         v3   -= 2;
10294c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10304c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10314c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
10324c1414c8SBarry Smith       }
10334c1414c8SBarry Smith       if (j==1) {
10344c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10354c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10364c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10374c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
10384c1414c8SBarry Smith       }
10394c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10404c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10414c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10424c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10434c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10444c1414c8SBarry Smith       x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
10454c1414c8SBarry Smith 
10464c1414c8SBarry Smith       break;
10474c1414c8SBarry Smith     case 4:
10484c1414c8SBarry Smith       sum1 = tmp[row];
10494c1414c8SBarry Smith       sum2 = tmp[row -1];
10504c1414c8SBarry Smith       sum3 = tmp[row -2];
10514c1414c8SBarry Smith       sum4 = tmp[row -3];
10524c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10534c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10544c1414c8SBarry Smith       v4   = aa + ai[row -2]-1;
10554c1414c8SBarry Smith 
10564c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10574c1414c8SBarry Smith         vi   -=2;
10584c1414c8SBarry Smith         i0    = vi[2];
10594c1414c8SBarry Smith         i1    = vi[1];
10604c1414c8SBarry Smith         tmp0  = tmps[i0];
10614c1414c8SBarry Smith         tmp1  = tmps[i1];
10624c1414c8SBarry Smith         v1   -= 2;
10634c1414c8SBarry Smith         v2   -= 2;
10644c1414c8SBarry Smith         v3   -= 2;
10654c1414c8SBarry Smith         v4   -= 2;
10664c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10674c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10684c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
10694c1414c8SBarry Smith         sum4 -= v4[2] * tmp0 + v4[1] * tmp1;
10704c1414c8SBarry Smith       }
10714c1414c8SBarry Smith       if (j==1) {
10724c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10734c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10744c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10754c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
10764c1414c8SBarry Smith         sum4 -= *v4-- * tmp0;
10774c1414c8SBarry Smith       }
10784c1414c8SBarry Smith 
10794c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10804c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10814c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10824c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
10834c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10844c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10854c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
10864c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
10874c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
10884c1414c8SBarry Smith       x[*c--] = tmp[row] = sum4*a_a[ad[row]]; row--;
10894c1414c8SBarry Smith       break;
10904c1414c8SBarry Smith     case 5:
10914c1414c8SBarry Smith       sum1 = tmp[row];
10924c1414c8SBarry Smith       sum2 = tmp[row -1];
10934c1414c8SBarry Smith       sum3 = tmp[row -2];
10944c1414c8SBarry Smith       sum4 = tmp[row -3];
10954c1414c8SBarry Smith       sum5 = tmp[row -4];
10964c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10974c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10984c1414c8SBarry Smith       v4   = aa + ai[row -2]-1;
10994c1414c8SBarry Smith       v5   = aa + ai[row -3]-1;
11004c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
11014c1414c8SBarry Smith         vi   -= 2;
11024c1414c8SBarry Smith         i0    = vi[2];
11034c1414c8SBarry Smith         i1    = vi[1];
11044c1414c8SBarry Smith         tmp0  = tmps[i0];
11054c1414c8SBarry Smith         tmp1  = tmps[i1];
11064c1414c8SBarry Smith         v1   -= 2;
11074c1414c8SBarry Smith         v2   -= 2;
11084c1414c8SBarry Smith         v3   -= 2;
11094c1414c8SBarry Smith         v4   -= 2;
11104c1414c8SBarry Smith         v5   -= 2;
11114c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
11124c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
11134c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
11144c1414c8SBarry Smith         sum4 -= v4[2] * tmp0 + v4[1] * tmp1;
11154c1414c8SBarry Smith         sum5 -= v5[2] * tmp0 + v5[1] * tmp1;
11164c1414c8SBarry Smith       }
11174c1414c8SBarry Smith       if (j==1) {
11184c1414c8SBarry Smith         tmp0  = tmps[*vi--];
11194c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
11204c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
11214c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
11224c1414c8SBarry Smith         sum4 -= *v4-- * tmp0;
11234c1414c8SBarry Smith         sum5 -= *v5-- * tmp0;
11244c1414c8SBarry Smith       }
11254c1414c8SBarry Smith 
11264c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
11274c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
11284c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11294c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11304c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11314c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
11324c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11334c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11344c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11354c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
11364c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11374c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11384c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum4*a_a[ad[row]]; row--;
11394c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11404c1414c8SBarry Smith       x[*c--] = tmp[row] = sum5*a_a[ad[row]]; row--;
11414c1414c8SBarry Smith       break;
11424c1414c8SBarry Smith     default:
1143e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
11444c1414c8SBarry Smith     }
11454c1414c8SBarry Smith   }
11464c1414c8SBarry Smith   ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr);
11474c1414c8SBarry Smith   ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr);
11483649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
11494c1414c8SBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1150dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz - A->cmap->n);CHKERRQ(ierr);
11514c1414c8SBarry Smith   PetscFunctionReturn(0);
11524c1414c8SBarry Smith }
11534c1414c8SBarry Smith 
11549a625307SHong Zhang PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode(Mat B,Mat A,const MatFactorInfo *info)
115528f1b45aSHong Zhang {
115628f1b45aSHong Zhang   Mat             C     =B;
115728f1b45aSHong Zhang   Mat_SeqAIJ      *a    =(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)C->data;
115828f1b45aSHong Zhang   IS              isrow = b->row,isicol = b->icol;
115928f1b45aSHong Zhang   PetscErrorCode  ierr;
116028f1b45aSHong Zhang   const PetscInt  *r,*ic,*ics;
116128f1b45aSHong Zhang   const PetscInt  n=A->rmap->n,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bdiag=b->diag;
116228f1b45aSHong Zhang   PetscInt        i,j,k,nz,nzL,row,*pj;
116328f1b45aSHong Zhang   const PetscInt  *ajtmp,*bjtmp;
11649877982aSShri Abhyankar   MatScalar       *pc,*pc1,*pc2,*pc3,*pc4,mul1,mul2,mul3,mul4,*pv,*rtmp1,*rtmp2,*rtmp3,*rtmp4;
11659877982aSShri Abhyankar   const MatScalar *aa=a->a,*v,*v1,*v2,*v3,*v4;
116628f1b45aSHong Zhang   FactorShiftCtx  sctx;
11674f81c4b7SBarry Smith   const PetscInt  *ddiag;
116828f1b45aSHong Zhang   PetscReal       rs;
116928f1b45aSHong Zhang   MatScalar       d;
11704f81c4b7SBarry Smith   PetscInt        inod,nodesz,node_max,col;
11714f81c4b7SBarry Smith   const PetscInt  *ns;
117207b50cabSHong Zhang   PetscInt        *tmp_vec1,*tmp_vec2,*nsmap;
11730e95ead3SHong Zhang 
117428f1b45aSHong Zhang   PetscFunctionBegin;
117528f1b45aSHong Zhang   /* MatPivotSetUp(): initialize shift context sctx */
117628f1b45aSHong Zhang   ierr = PetscMemzero(&sctx,sizeof(FactorShiftCtx));CHKERRQ(ierr);
117728f1b45aSHong Zhang 
1178f4db908eSBarry Smith   if (info->shifttype == (PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) { /* set sctx.shift_top=max{rs} */
117928f1b45aSHong Zhang     ddiag          = a->diag;
118028f1b45aSHong Zhang     sctx.shift_top = info->zeropivot;
118128f1b45aSHong Zhang     for (i=0; i<n; i++) {
118228f1b45aSHong Zhang       /* calculate sum(|aij|)-RealPart(aii), amt of shift needed for this row */
118328f1b45aSHong Zhang       d  = (aa)[ddiag[i]];
118428f1b45aSHong Zhang       rs = -PetscAbsScalar(d) - PetscRealPart(d);
118528f1b45aSHong Zhang       v  = aa+ai[i];
118628f1b45aSHong Zhang       nz = ai[i+1] - ai[i];
11872205254eSKarl Rupp       for (j=0; j<nz; j++) rs += PetscAbsScalar(v[j]);
118828f1b45aSHong Zhang       if (rs>sctx.shift_top) sctx.shift_top = rs;
118928f1b45aSHong Zhang     }
119028f1b45aSHong Zhang     sctx.shift_top *= 1.1;
119128f1b45aSHong Zhang     sctx.nshift_max = 5;
119228f1b45aSHong Zhang     sctx.shift_lo   = 0.;
119328f1b45aSHong Zhang     sctx.shift_hi   = 1.;
119428f1b45aSHong Zhang   }
119528f1b45aSHong Zhang 
119628f1b45aSHong Zhang   ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr);
119728f1b45aSHong Zhang   ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr);
119868785679SHong Zhang 
11991795a4d1SJed Brown   ierr  = PetscCalloc4(n,&rtmp1,n,&rtmp2,n,&rtmp3,n,&rtmp4);CHKERRQ(ierr);
120028f1b45aSHong Zhang   ics   = ic;
120128f1b45aSHong Zhang 
120228f1b45aSHong Zhang   node_max = a->inode.node_count;
120328f1b45aSHong Zhang   ns       = a->inode.size;
1204e7e72b3dSBarry Smith   if (!ns) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Matrix without inode information");
120528f1b45aSHong Zhang 
12069877982aSShri Abhyankar   /* If max inode size > 4, split it into two inodes.*/
120768785679SHong Zhang   /* also map the inode sizes according to the ordering */
1208854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tmp_vec1);CHKERRQ(ierr);
120968785679SHong Zhang   for (i=0,j=0; i<node_max; ++i,++j) {
1210b1550197SShri Abhyankar     if (ns[i] > 4) {
1211048b5e81SShri Abhyankar       tmp_vec1[j] = 4;
121268785679SHong Zhang       ++j;
121368785679SHong Zhang       tmp_vec1[j] = ns[i] - tmp_vec1[j-1];
121468785679SHong Zhang     } else {
121568785679SHong Zhang       tmp_vec1[j] = ns[i];
121668785679SHong Zhang     }
121768785679SHong Zhang   }
121868785679SHong Zhang   /* Use the correct node_max */
121968785679SHong Zhang   node_max = j;
122068785679SHong Zhang 
122168785679SHong Zhang   /* Now reorder the inode info based on mat re-ordering info */
122268785679SHong Zhang   /* First create a row -> inode_size_array_index map */
1223854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&nsmap);CHKERRQ(ierr);
1224854ce69bSBarry Smith   ierr = PetscMalloc1(node_max+1,&tmp_vec2);CHKERRQ(ierr);
122568785679SHong Zhang   for (i=0,row=0; i<node_max; i++) {
122668785679SHong Zhang     nodesz = tmp_vec1[i];
122768785679SHong Zhang     for (j=0; j<nodesz; j++,row++) {
122868785679SHong Zhang       nsmap[row] = i;
122968785679SHong Zhang     }
123068785679SHong Zhang   }
123168785679SHong Zhang   /* Using nsmap, create a reordered ns structure */
123268785679SHong Zhang   for (i=0,j=0; i< node_max; i++) {
123368785679SHong Zhang     nodesz      = tmp_vec1[nsmap[r[j]]];     /* here the reordered row_no is in r[] */
123468785679SHong Zhang     tmp_vec2[i] = nodesz;
123568785679SHong Zhang     j          += nodesz;
123668785679SHong Zhang   }
123768785679SHong Zhang   ierr = PetscFree(nsmap);CHKERRQ(ierr);
123868785679SHong Zhang   ierr = PetscFree(tmp_vec1);CHKERRQ(ierr);
1239b89f182dSHong Zhang 
124068785679SHong Zhang   /* Now use the correct ns */
124168785679SHong Zhang   ns = tmp_vec2;
124268785679SHong Zhang 
124328f1b45aSHong Zhang   do {
124407b50cabSHong Zhang     sctx.newshift = PETSC_FALSE;
124528f1b45aSHong Zhang     /* Now loop over each block-row, and do the factorization */
124628f1b45aSHong Zhang     for (inod=0,i=0; inod<node_max; inod++) { /* i: row index; inod: inode index */
124728f1b45aSHong Zhang       nodesz = ns[inod];
124828f1b45aSHong Zhang 
124928f1b45aSHong Zhang       switch (nodesz) {
125028f1b45aSHong Zhang       case 1:
125168785679SHong Zhang         /*----------*/
1252b89f182dSHong Zhang         /* zero rtmp1 */
125328f1b45aSHong Zhang         /* L part */
125428f1b45aSHong Zhang         nz    = bi[i+1] - bi[i];
125528f1b45aSHong Zhang         bjtmp = bj + bi[i];
1256b89f182dSHong Zhang         for (j=0; j<nz; j++) rtmp1[bjtmp[j]] = 0.0;
125728f1b45aSHong Zhang 
125828f1b45aSHong Zhang         /* U part */
125928f1b45aSHong Zhang         nz    = bdiag[i]-bdiag[i+1];
126028f1b45aSHong Zhang         bjtmp = bj + bdiag[i+1]+1;
1261b89f182dSHong Zhang         for (j=0; j<nz; j++) rtmp1[bjtmp[j]] = 0.0;
126228f1b45aSHong Zhang 
126328f1b45aSHong Zhang         /* load in initial (unfactored row) */
126428f1b45aSHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
126528f1b45aSHong Zhang         ajtmp = aj + ai[r[i]];
126628f1b45aSHong Zhang         v     = aa + ai[r[i]];
12672205254eSKarl Rupp         for (j=0; j<nz; j++) rtmp1[ics[ajtmp[j]]] = v[j];
12682205254eSKarl Rupp 
126928f1b45aSHong Zhang         /* ZeropivotApply() */
1270b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount;  /* shift the diagonal of the matrix */
127128f1b45aSHong Zhang 
127228f1b45aSHong Zhang         /* elimination */
127328f1b45aSHong Zhang         bjtmp = bj + bi[i];
127428f1b45aSHong Zhang         row   = *bjtmp++;
127528f1b45aSHong Zhang         nzL   = bi[i+1] - bi[i];
127628f1b45aSHong Zhang         for (k=0; k < nzL; k++) {
1277b89f182dSHong Zhang           pc = rtmp1 + row;
127828f1b45aSHong Zhang           if (*pc != 0.0) {
127928f1b45aSHong Zhang             pv   = b->a + bdiag[row];
1280b89f182dSHong Zhang             mul1 = *pc * (*pv);
1281b89f182dSHong Zhang             *pc  = mul1;
128228f1b45aSHong Zhang             pj   = b->j + bdiag[row+1]+1; /* beginning of U(row,:) */
128328f1b45aSHong Zhang             pv   = b->a + bdiag[row+1]+1;
128428f1b45aSHong Zhang             nz   = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
1285b89f182dSHong Zhang             for (j=0; j<nz; j++) rtmp1[pj[j]] -= mul1 * pv[j];
128628b1a77fSLisandro Dalcin             ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
128728f1b45aSHong Zhang           }
128828f1b45aSHong Zhang           row = *bjtmp++;
128928f1b45aSHong Zhang         }
129028f1b45aSHong Zhang 
129128f1b45aSHong Zhang         /* finished row so stick it into b->a */
129228f1b45aSHong Zhang         rs = 0.0;
129328f1b45aSHong Zhang         /* L part */
129428f1b45aSHong Zhang         pv = b->a + bi[i];
129528f1b45aSHong Zhang         pj = b->j + bi[i];
129628f1b45aSHong Zhang         nz = bi[i+1] - bi[i];
129728f1b45aSHong Zhang         for (j=0; j<nz; j++) {
1298b89f182dSHong Zhang           pv[j] = rtmp1[pj[j]]; rs += PetscAbsScalar(pv[j]);
129928f1b45aSHong Zhang         }
130028f1b45aSHong Zhang 
130128f1b45aSHong Zhang         /* U part */
130228f1b45aSHong Zhang         pv = b->a + bdiag[i+1]+1;
130328f1b45aSHong Zhang         pj = b->j + bdiag[i+1]+1;
130428f1b45aSHong Zhang         nz = bdiag[i] - bdiag[i+1]-1;
130528f1b45aSHong Zhang         for (j=0; j<nz; j++) {
1306b89f182dSHong Zhang           pv[j] = rtmp1[pj[j]]; rs += PetscAbsScalar(pv[j]);
130728f1b45aSHong Zhang         }
130828f1b45aSHong Zhang 
1309b89f182dSHong Zhang         /* Check zero pivot */
131028f1b45aSHong Zhang         sctx.rs = rs;
1311b89f182dSHong Zhang         sctx.pv = rtmp1[i];
13124cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
131307b50cabSHong Zhang         if (sctx.newshift) break;
131428f1b45aSHong Zhang 
131528f1b45aSHong Zhang         /* Mark diagonal and invert diagonal for simplier triangular solves */
131628f1b45aSHong Zhang         pv  = b->a + bdiag[i];
1317b89f182dSHong Zhang         *pv = 1.0/sctx.pv; /* sctx.pv = rtmp1[i]+shiftamount if shifttype==MAT_SHIFT_INBLOCKS */
131828f1b45aSHong Zhang         break;
131928f1b45aSHong Zhang 
132028f1b45aSHong Zhang       case 2:
132128f1b45aSHong Zhang         /*----------*/
1322b89f182dSHong Zhang         /* zero rtmp1 and rtmp2 */
132328f1b45aSHong Zhang         /* L part */
132428f1b45aSHong Zhang         nz    = bi[i+1] - bi[i];
132528f1b45aSHong Zhang         bjtmp = bj + bi[i];
132628f1b45aSHong Zhang         for  (j=0; j<nz; j++) {
132768785679SHong Zhang           col        = bjtmp[j];
1328b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0;
132928f1b45aSHong Zhang         }
133028f1b45aSHong Zhang 
133128f1b45aSHong Zhang         /* U part */
133228f1b45aSHong Zhang         nz    = bdiag[i]-bdiag[i+1];
133328f1b45aSHong Zhang         bjtmp = bj + bdiag[i+1]+1;
133428f1b45aSHong Zhang         for  (j=0; j<nz; j++) {
133568785679SHong Zhang           col        = bjtmp[j];
1336b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0;
133728f1b45aSHong Zhang         }
133828f1b45aSHong Zhang 
133928f1b45aSHong Zhang         /* load in initial (unfactored row) */
134028f1b45aSHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
134128f1b45aSHong Zhang         ajtmp = aj + ai[r[i]];
134228f1b45aSHong Zhang         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1];
134328f1b45aSHong Zhang         for (j=0; j<nz; j++) {
134468785679SHong Zhang           col        = ics[ajtmp[j]];
1345b89f182dSHong Zhang           rtmp1[col] = v1[j]; rtmp2[col] = v2[j];
134628f1b45aSHong Zhang         }
134728f1b45aSHong Zhang         /* ZeropivotApply(): shift the diagonal of the matrix  */
1348b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount;
134928f1b45aSHong Zhang 
135028f1b45aSHong Zhang         /* elimination */
135128f1b45aSHong Zhang         bjtmp = bj + bi[i];
135228f1b45aSHong Zhang         row   = *bjtmp++; /* pivot row */
135328f1b45aSHong Zhang         nzL   = bi[i+1] - bi[i];
135428f1b45aSHong Zhang         for (k=0; k < nzL; k++) {
1355b89f182dSHong Zhang           pc1 = rtmp1 + row;
1356b89f182dSHong Zhang           pc2 = rtmp2 + row;
135728f1b45aSHong Zhang           if (*pc1 != 0.0 || *pc2 != 0.0) {
135828f1b45aSHong Zhang             pv   = b->a + bdiag[row];
1359b89f182dSHong Zhang             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv);
1360b89f182dSHong Zhang             *pc1 = mul1;       *pc2 = mul2;
136128f1b45aSHong Zhang 
136228f1b45aSHong Zhang             pj = b->j + bdiag[row+1]+1;     /* beginning of U(row,:) */
136328f1b45aSHong Zhang             pv = b->a + bdiag[row+1]+1;
136428f1b45aSHong Zhang             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
136528f1b45aSHong Zhang             for (j=0; j<nz; j++) {
136668785679SHong Zhang               col         = pj[j];
1367b89f182dSHong Zhang               rtmp1[col] -= mul1 * pv[j];
1368b89f182dSHong Zhang               rtmp2[col] -= mul2 * pv[j];
136928f1b45aSHong Zhang             }
137028b1a77fSLisandro Dalcin             ierr = PetscLogFlops(2+4*nz);CHKERRQ(ierr);
137128f1b45aSHong Zhang           }
137228f1b45aSHong Zhang           row = *bjtmp++;
137328f1b45aSHong Zhang         }
137428f1b45aSHong Zhang 
1375b89f182dSHong Zhang         /* finished row i; check zero pivot, then stick row i into b->a */
137628f1b45aSHong Zhang         rs = 0.0;
137728f1b45aSHong Zhang         /* L part */
1378b89f182dSHong Zhang         pc1 = b->a + bi[i];
137928f1b45aSHong Zhang         pj  = b->j + bi[i];
138028f1b45aSHong Zhang         nz  = bi[i+1] - bi[i];
138128f1b45aSHong Zhang         for (j=0; j<nz; j++) {
138268785679SHong Zhang           col    = pj[j];
13830e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
138428f1b45aSHong Zhang         }
138528f1b45aSHong Zhang         /* U part */
1386b89f182dSHong Zhang         pc1 = b->a + bdiag[i+1]+1;
138728f1b45aSHong Zhang         pj  = b->j + bdiag[i+1]+1;
13880e7a5c2bSHong Zhang         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
138928f1b45aSHong Zhang         for (j=0; j<nz; j++) {
139068785679SHong Zhang           col    = pj[j];
13910e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
139228f1b45aSHong Zhang         }
139328f1b45aSHong Zhang 
139428f1b45aSHong Zhang         sctx.rs = rs;
1395b89f182dSHong Zhang         sctx.pv = rtmp1[i];
13964cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
139707b50cabSHong Zhang         if (sctx.newshift) break;
1398b89f182dSHong Zhang         pc1  = b->a + bdiag[i]; /* Mark diagonal */
1399b89f182dSHong Zhang         *pc1 = 1.0/sctx.pv;
1400b89f182dSHong Zhang 
1401b89f182dSHong Zhang         /* Now take care of diagonal 2x2 block. */
1402b89f182dSHong Zhang         pc2 = rtmp2 + i;
1403b89f182dSHong Zhang         if (*pc2 != 0.0) {
1404b89f182dSHong Zhang           mul1 = (*pc2)*(*pc1); /* *pc1=diag[i] is inverted! */
1405b89f182dSHong Zhang           *pc2 = mul1;          /* insert L entry */
1406b89f182dSHong Zhang           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
1407b89f182dSHong Zhang           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
1408b89f182dSHong Zhang           for (j=0; j<nz; j++) {
1409b89f182dSHong Zhang             col = pj[j]; rtmp2[col] -= mul1 * rtmp1[col];
141028f1b45aSHong Zhang           }
141128b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
1412b89f182dSHong Zhang         }
1413b89f182dSHong Zhang 
1414b89f182dSHong Zhang         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
1415b89f182dSHong Zhang         rs = 0.0;
1416b89f182dSHong Zhang         /* L part */
1417b89f182dSHong Zhang         pc2 = b->a + bi[i+1];
1418b89f182dSHong Zhang         pj  = b->j + bi[i+1];
1419b89f182dSHong Zhang         nz  = bi[i+2] - bi[i+1];
1420b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1421b89f182dSHong Zhang           col    = pj[j];
14220e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1423b89f182dSHong Zhang         }
1424b89f182dSHong Zhang         /* U part */
1425b89f182dSHong Zhang         pc2 = b->a + bdiag[i+2]+1;
14260e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+2]+1;
14270e7a5c2bSHong Zhang         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
1428b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1429b89f182dSHong Zhang           col    = pj[j];
14300e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1431b89f182dSHong Zhang         }
1432b89f182dSHong Zhang 
143328f1b45aSHong Zhang         sctx.rs = rs;
1434b89f182dSHong Zhang         sctx.pv = rtmp2[i+1];
14354cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+1);CHKERRQ(ierr);
143607b50cabSHong Zhang         if (sctx.newshift) break;
143728f1b45aSHong Zhang         pc2  = b->a + bdiag[i+1];
1438b89f182dSHong Zhang         *pc2 = 1.0/sctx.pv;
143928f1b45aSHong Zhang         break;
1440b89f182dSHong Zhang 
144168785679SHong Zhang       case 3:
144268785679SHong Zhang         /*----------*/
144368785679SHong Zhang         /* zero rtmp */
144468785679SHong Zhang         /* L part */
144568785679SHong Zhang         nz    = bi[i+1] - bi[i];
144668785679SHong Zhang         bjtmp = bj + bi[i];
144768785679SHong Zhang         for  (j=0; j<nz; j++) {
144868785679SHong Zhang           col        = bjtmp[j];
1449b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;
145068785679SHong Zhang         }
145168785679SHong Zhang 
145268785679SHong Zhang         /* U part */
145368785679SHong Zhang         nz    = bdiag[i]-bdiag[i+1];
145468785679SHong Zhang         bjtmp = bj + bdiag[i+1]+1;
145568785679SHong Zhang         for  (j=0; j<nz; j++) {
145668785679SHong Zhang           col        = bjtmp[j];
1457b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;
145868785679SHong Zhang         }
145968785679SHong Zhang 
146068785679SHong Zhang         /* load in initial (unfactored row) */
146168785679SHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
146268785679SHong Zhang         ajtmp = aj + ai[r[i]];
146368785679SHong Zhang         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1]; v3 = aa + ai[r[i]+2];
146468785679SHong Zhang         for (j=0; j<nz; j++) {
146568785679SHong Zhang           col        = ics[ajtmp[j]];
1466b89f182dSHong Zhang           rtmp1[col] = v1[j]; rtmp2[col] = v2[j]; rtmp3[col] = v3[j];
146768785679SHong Zhang         }
146868785679SHong Zhang         /* ZeropivotApply(): shift the diagonal of the matrix  */
1469b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount; rtmp3[i+2] += sctx.shift_amount;
147068785679SHong Zhang 
147168785679SHong Zhang         /* elimination */
147268785679SHong Zhang         bjtmp = bj + bi[i];
147368785679SHong Zhang         row   = *bjtmp++; /* pivot row */
147468785679SHong Zhang         nzL   = bi[i+1] - bi[i];
147568785679SHong Zhang         for (k=0; k < nzL; k++) {
1476b89f182dSHong Zhang           pc1 = rtmp1 + row;
1477b89f182dSHong Zhang           pc2 = rtmp2 + row;
1478b89f182dSHong Zhang           pc3 = rtmp3 + row;
147968785679SHong Zhang           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 != 0.0) {
148068785679SHong Zhang             pv   = b->a + bdiag[row];
1481b89f182dSHong Zhang             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv); mul3 = *pc3*(*pv);
1482b89f182dSHong Zhang             *pc1 = mul1; *pc2 = mul2; *pc3 = mul3;
148368785679SHong Zhang 
148468785679SHong Zhang             pj = b->j + bdiag[row+1]+1;     /* beginning of U(row,:) */
148568785679SHong Zhang             pv = b->a + bdiag[row+1]+1;
148668785679SHong Zhang             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
148768785679SHong Zhang             for (j=0; j<nz; j++) {
148868785679SHong Zhang               col         = pj[j];
1489b89f182dSHong Zhang               rtmp1[col] -= mul1 * pv[j];
1490b89f182dSHong Zhang               rtmp2[col] -= mul2 * pv[j];
1491b89f182dSHong Zhang               rtmp3[col] -= mul3 * pv[j];
149268785679SHong Zhang             }
149328b1a77fSLisandro Dalcin             ierr = PetscLogFlops(3+6*nz);CHKERRQ(ierr);
149468785679SHong Zhang           }
149568785679SHong Zhang           row = *bjtmp++;
149668785679SHong Zhang         }
149768785679SHong Zhang 
1498b89f182dSHong Zhang         /* finished row i; check zero pivot, then stick row i into b->a */
1499b89f182dSHong Zhang         rs = 0.0;
1500b89f182dSHong Zhang         /* L part */
1501b89f182dSHong Zhang         pc1 = b->a + bi[i];
1502b89f182dSHong Zhang         pj  = b->j + bi[i];
1503b89f182dSHong Zhang         nz  = bi[i+1] - bi[i];
1504b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1505b89f182dSHong Zhang           col    = pj[j];
15060e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
1507b89f182dSHong Zhang         }
1508b89f182dSHong Zhang         /* U part */
1509b89f182dSHong Zhang         pc1 = b->a + bdiag[i+1]+1;
1510b89f182dSHong Zhang         pj  = b->j + bdiag[i+1]+1;
15110e7a5c2bSHong Zhang         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
1512b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1513b89f182dSHong Zhang           col    = pj[j];
15140e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
1515b89f182dSHong Zhang         }
151668785679SHong Zhang 
1517b89f182dSHong Zhang         sctx.rs = rs;
1518b89f182dSHong Zhang         sctx.pv = rtmp1[i];
15194cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
152007b50cabSHong Zhang         if (sctx.newshift) break;
1521b89f182dSHong Zhang         pc1  = b->a + bdiag[i]; /* Mark diag[i] */
1522b89f182dSHong Zhang         *pc1 = 1.0/sctx.pv;
1523b89f182dSHong Zhang 
1524b89f182dSHong Zhang         /* Now take care of 1st column of diagonal 3x3 block. */
1525b89f182dSHong Zhang         pc2 = rtmp2 + i;
1526b89f182dSHong Zhang         pc3 = rtmp3 + i;
1527b89f182dSHong Zhang         if (*pc2 != 0.0 || *pc3 != 0.0) {
1528b89f182dSHong Zhang           mul2 = (*pc2)*(*pc1); *pc2 = mul2;
1529b89f182dSHong Zhang           mul3 = (*pc3)*(*pc1); *pc3 = mul3;
153068785679SHong Zhang           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
153168785679SHong Zhang           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
153268785679SHong Zhang           for (j=0; j<nz; j++) {
153368785679SHong Zhang             col         = pj[j];
1534b89f182dSHong Zhang             rtmp2[col] -= mul2 * rtmp1[col];
1535b89f182dSHong Zhang             rtmp3[col] -= mul3 * rtmp1[col];
153668785679SHong Zhang           }
153728b1a77fSLisandro Dalcin           ierr = PetscLogFlops(2+4*nz);CHKERRQ(ierr);
153868785679SHong Zhang         }
153968785679SHong Zhang 
1540b89f182dSHong Zhang         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
1541b89f182dSHong Zhang         rs = 0.0;
1542b89f182dSHong Zhang         /* L part */
1543b89f182dSHong Zhang         pc2 = b->a + bi[i+1];
1544b89f182dSHong Zhang         pj  = b->j + bi[i+1];
1545b89f182dSHong Zhang         nz  = bi[i+2] - bi[i+1];
1546b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1547b89f182dSHong Zhang           col    = pj[j];
15480e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1549b89f182dSHong Zhang         }
1550b89f182dSHong Zhang         /* U part */
1551b89f182dSHong Zhang         pc2 = b->a + bdiag[i+2]+1;
15520e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+2]+1;
15530e7a5c2bSHong Zhang         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
1554b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1555b89f182dSHong Zhang           col    = pj[j];
15560e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1557b89f182dSHong Zhang         }
1558b89f182dSHong Zhang 
1559b89f182dSHong Zhang         sctx.rs = rs;
1560b89f182dSHong Zhang         sctx.pv = rtmp2[i+1];
15614cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+1);CHKERRQ(ierr);
156207b50cabSHong Zhang         if (sctx.newshift) break;
1563b89f182dSHong Zhang         pc2  = b->a + bdiag[i+1];
1564b89f182dSHong Zhang         *pc2 = 1.0/sctx.pv; /* Mark diag[i+1] */
1565b89f182dSHong Zhang 
1566b89f182dSHong Zhang         /* Now take care of 2nd column of diagonal 3x3 block. */
1567b89f182dSHong Zhang         pc3 = rtmp3 + i+1;
156868785679SHong Zhang         if (*pc3 != 0.0) {
1569b89f182dSHong Zhang           mul3 = (*pc3)*(*pc2); *pc3 = mul3;
157068785679SHong Zhang           pj   = b->j + bdiag[i+2]+1;     /* beginning of U(i+1,:) */
157168785679SHong Zhang           nz   = bdiag[i+1]-bdiag[i+2]-1; /* num of entries in U(i+1,:) excluding diag */
157268785679SHong Zhang           for (j=0; j<nz; j++) {
157368785679SHong Zhang             col         = pj[j];
1574b89f182dSHong Zhang             rtmp3[col] -= mul3 * rtmp2[col];
157568785679SHong Zhang           }
157628b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
157768785679SHong Zhang         }
157868785679SHong Zhang 
1579b89f182dSHong Zhang         /* finished i+2; check zero pivot, then stick row i+2 into b->a */
158068785679SHong Zhang         rs = 0.0;
158168785679SHong Zhang         /* L part */
1582b89f182dSHong Zhang         pc3 = b->a + bi[i+2];
1583b89f182dSHong Zhang         pj  = b->j + bi[i+2];
1584b89f182dSHong Zhang         nz  = bi[i+3] - bi[i+2];
158568785679SHong Zhang         for (j=0; j<nz; j++) {
158668785679SHong Zhang           col    = pj[j];
15870e7a5c2bSHong Zhang           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
158868785679SHong Zhang         }
158968785679SHong Zhang         /* U part */
1590b89f182dSHong Zhang         pc3 = b->a + bdiag[i+3]+1;
15910e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+3]+1;
15920e7a5c2bSHong Zhang         nz  = bdiag[i+2] - bdiag[i+3] - 1; /* exclude diagonal */
159368785679SHong Zhang         for (j=0; j<nz; j++) {
159468785679SHong Zhang           col    = pj[j];
15950e7a5c2bSHong Zhang           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
159668785679SHong Zhang         }
159768785679SHong Zhang 
159868785679SHong Zhang         sctx.rs = rs;
1599b89f182dSHong Zhang         sctx.pv = rtmp3[i+2];
16004cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+2);CHKERRQ(ierr);
160107b50cabSHong Zhang         if (sctx.newshift) break;
160268785679SHong Zhang         pc3  = b->a + bdiag[i+2];
1603b89f182dSHong Zhang         *pc3 = 1.0/sctx.pv; /* Mark diag[i+2] */
160468785679SHong Zhang         break;
16059877982aSShri Abhyankar       case 4:
16069877982aSShri Abhyankar         /*----------*/
16079877982aSShri Abhyankar         /* zero rtmp */
16089877982aSShri Abhyankar         /* L part */
16099877982aSShri Abhyankar         nz    = bi[i+1] - bi[i];
16109877982aSShri Abhyankar         bjtmp = bj + bi[i];
16119877982aSShri Abhyankar         for  (j=0; j<nz; j++) {
16129877982aSShri Abhyankar           col        = bjtmp[j];
16139877982aSShri Abhyankar           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;rtmp4[col] = 0.0;
16149877982aSShri Abhyankar         }
16159877982aSShri Abhyankar 
16169877982aSShri Abhyankar         /* U part */
16179877982aSShri Abhyankar         nz    = bdiag[i]-bdiag[i+1];
16189877982aSShri Abhyankar         bjtmp = bj + bdiag[i+1]+1;
16199877982aSShri Abhyankar         for  (j=0; j<nz; j++) {
16209877982aSShri Abhyankar           col        = bjtmp[j];
16219877982aSShri Abhyankar           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0; rtmp4[col] = 0.0;
16229877982aSShri Abhyankar         }
16239877982aSShri Abhyankar 
16249877982aSShri Abhyankar         /* load in initial (unfactored row) */
16259877982aSShri Abhyankar         nz    = ai[r[i]+1] - ai[r[i]];
16269877982aSShri Abhyankar         ajtmp = aj + ai[r[i]];
16279877982aSShri Abhyankar         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1]; v3 = aa + ai[r[i]+2]; v4 = aa + ai[r[i]+3];
16289877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16299877982aSShri Abhyankar           col        = ics[ajtmp[j]];
16309877982aSShri Abhyankar           rtmp1[col] = v1[j]; rtmp2[col] = v2[j]; rtmp3[col] = v3[j]; rtmp4[col] = v4[j];
16319877982aSShri Abhyankar         }
16329877982aSShri Abhyankar         /* ZeropivotApply(): shift the diagonal of the matrix  */
16339877982aSShri Abhyankar         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount; rtmp3[i+2] += sctx.shift_amount; rtmp4[i+3] += sctx.shift_amount;
16349877982aSShri Abhyankar 
16359877982aSShri Abhyankar         /* elimination */
16369877982aSShri Abhyankar         bjtmp = bj + bi[i];
16379877982aSShri Abhyankar         row   = *bjtmp++; /* pivot row */
16389877982aSShri Abhyankar         nzL   = bi[i+1] - bi[i];
16399877982aSShri Abhyankar         for (k=0; k < nzL; k++) {
16409877982aSShri Abhyankar           pc1 = rtmp1 + row;
16419877982aSShri Abhyankar           pc2 = rtmp2 + row;
16429877982aSShri Abhyankar           pc3 = rtmp3 + row;
16439877982aSShri Abhyankar           pc4 = rtmp4 + row;
16449877982aSShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 != 0.0 || *pc4 != 0.0) {
16459877982aSShri Abhyankar             pv   = b->a + bdiag[row];
16469877982aSShri Abhyankar             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv); mul3 = *pc3*(*pv); mul4 = *pc4*(*pv);
16479877982aSShri Abhyankar             *pc1 = mul1; *pc2 = mul2; *pc3 = mul3; *pc4 = mul4;
16489877982aSShri Abhyankar 
16499877982aSShri Abhyankar             pj = b->j + bdiag[row+1]+1; /* beginning of U(row,:) */
16509877982aSShri Abhyankar             pv = b->a + bdiag[row+1]+1;
16519877982aSShri Abhyankar             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
16529877982aSShri Abhyankar             for (j=0; j<nz; j++) {
16539877982aSShri Abhyankar               col         = pj[j];
16549877982aSShri Abhyankar               rtmp1[col] -= mul1 * pv[j];
16559877982aSShri Abhyankar               rtmp2[col] -= mul2 * pv[j];
16569877982aSShri Abhyankar               rtmp3[col] -= mul3 * pv[j];
16579877982aSShri Abhyankar               rtmp4[col] -= mul4 * pv[j];
16589877982aSShri Abhyankar             }
165928b1a77fSLisandro Dalcin             ierr = PetscLogFlops(4+8*nz);CHKERRQ(ierr);
16609877982aSShri Abhyankar           }
16619877982aSShri Abhyankar           row = *bjtmp++;
16629877982aSShri Abhyankar         }
16639877982aSShri Abhyankar 
16649877982aSShri Abhyankar         /* finished row i; check zero pivot, then stick row i into b->a */
16659877982aSShri Abhyankar         rs = 0.0;
16669877982aSShri Abhyankar         /* L part */
16679877982aSShri Abhyankar         pc1 = b->a + bi[i];
16689877982aSShri Abhyankar         pj  = b->j + bi[i];
16699877982aSShri Abhyankar         nz  = bi[i+1] - bi[i];
16709877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16719877982aSShri Abhyankar           col    = pj[j];
16729877982aSShri Abhyankar           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
16739877982aSShri Abhyankar         }
16749877982aSShri Abhyankar         /* U part */
16759877982aSShri Abhyankar         pc1 = b->a + bdiag[i+1]+1;
16769877982aSShri Abhyankar         pj  = b->j + bdiag[i+1]+1;
16779877982aSShri Abhyankar         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
16789877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16799877982aSShri Abhyankar           col    = pj[j];
16809877982aSShri Abhyankar           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
16819877982aSShri Abhyankar         }
16829877982aSShri Abhyankar 
16839877982aSShri Abhyankar         sctx.rs = rs;
16849877982aSShri Abhyankar         sctx.pv = rtmp1[i];
16854cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
168607b50cabSHong Zhang         if (sctx.newshift) break;
16879877982aSShri Abhyankar         pc1  = b->a + bdiag[i]; /* Mark diag[i] */
16889877982aSShri Abhyankar         *pc1 = 1.0/sctx.pv;
16899877982aSShri Abhyankar 
16909877982aSShri Abhyankar         /* Now take care of 1st column of diagonal 4x4 block. */
16919877982aSShri Abhyankar         pc2 = rtmp2 + i;
16929877982aSShri Abhyankar         pc3 = rtmp3 + i;
16939877982aSShri Abhyankar         pc4 = rtmp4 + i;
16949877982aSShri Abhyankar         if (*pc2 != 0.0 || *pc3 != 0.0 || *pc4 != 0.0) {
16959877982aSShri Abhyankar           mul2 = (*pc2)*(*pc1); *pc2 = mul2;
16969877982aSShri Abhyankar           mul3 = (*pc3)*(*pc1); *pc3 = mul3;
16979877982aSShri Abhyankar           mul4 = (*pc4)*(*pc1); *pc4 = mul4;
16989877982aSShri Abhyankar           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
16999877982aSShri Abhyankar           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
17009877982aSShri Abhyankar           for (j=0; j<nz; j++) {
17019877982aSShri Abhyankar             col         = pj[j];
17029877982aSShri Abhyankar             rtmp2[col] -= mul2 * rtmp1[col];
17039877982aSShri Abhyankar             rtmp3[col] -= mul3 * rtmp1[col];
17049877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp1[col];
17059877982aSShri Abhyankar           }
170628b1a77fSLisandro Dalcin           ierr = PetscLogFlops(3+6*nz);CHKERRQ(ierr);
17079877982aSShri Abhyankar         }
17089877982aSShri Abhyankar 
17099877982aSShri Abhyankar         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
17109877982aSShri Abhyankar         rs = 0.0;
17119877982aSShri Abhyankar         /* L part */
17129877982aSShri Abhyankar         pc2 = b->a + bi[i+1];
17139877982aSShri Abhyankar         pj  = b->j + bi[i+1];
17149877982aSShri Abhyankar         nz  = bi[i+2] - bi[i+1];
17159877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17169877982aSShri Abhyankar           col    = pj[j];
17179877982aSShri Abhyankar           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
17189877982aSShri Abhyankar         }
17199877982aSShri Abhyankar         /* U part */
17209877982aSShri Abhyankar         pc2 = b->a + bdiag[i+2]+1;
17219877982aSShri Abhyankar         pj  = b->j + bdiag[i+2]+1;
17229877982aSShri Abhyankar         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
17239877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17249877982aSShri Abhyankar           col    = pj[j];
17259877982aSShri Abhyankar           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
17269877982aSShri Abhyankar         }
17279877982aSShri Abhyankar 
17289877982aSShri Abhyankar         sctx.rs = rs;
17299877982aSShri Abhyankar         sctx.pv = rtmp2[i+1];
17304cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+1);CHKERRQ(ierr);
173107b50cabSHong Zhang         if (sctx.newshift) break;
17329877982aSShri Abhyankar         pc2  = b->a + bdiag[i+1];
17339877982aSShri Abhyankar         *pc2 = 1.0/sctx.pv; /* Mark diag[i+1] */
17349877982aSShri Abhyankar 
17359877982aSShri Abhyankar         /* Now take care of 2nd column of diagonal 4x4 block. */
17369877982aSShri Abhyankar         pc3 = rtmp3 + i+1;
17379877982aSShri Abhyankar         pc4 = rtmp4 + i+1;
17389877982aSShri Abhyankar         if (*pc3 != 0.0 || *pc4 != 0.0) {
17399877982aSShri Abhyankar           mul3 = (*pc3)*(*pc2); *pc3 = mul3;
17409877982aSShri Abhyankar           mul4 = (*pc4)*(*pc2); *pc4 = mul4;
17419877982aSShri Abhyankar           pj   = b->j + bdiag[i+2]+1;     /* beginning of U(i+1,:) */
17429877982aSShri Abhyankar           nz   = bdiag[i+1]-bdiag[i+2]-1; /* num of entries in U(i+1,:) excluding diag */
17439877982aSShri Abhyankar           for (j=0; j<nz; j++) {
17449877982aSShri Abhyankar             col         = pj[j];
17459877982aSShri Abhyankar             rtmp3[col] -= mul3 * rtmp2[col];
17469877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp2[col];
17479877982aSShri Abhyankar           }
17489877982aSShri Abhyankar           ierr = PetscLogFlops(4*nz);CHKERRQ(ierr);
17499877982aSShri Abhyankar         }
17509877982aSShri Abhyankar 
17519877982aSShri Abhyankar         /* finished i+2; check zero pivot, then stick row i+2 into b->a */
17529877982aSShri Abhyankar         rs = 0.0;
17539877982aSShri Abhyankar         /* L part */
17549877982aSShri Abhyankar         pc3 = b->a + bi[i+2];
17559877982aSShri Abhyankar         pj  = b->j + bi[i+2];
17569877982aSShri Abhyankar         nz  = bi[i+3] - bi[i+2];
17579877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17589877982aSShri Abhyankar           col    = pj[j];
17599877982aSShri Abhyankar           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
17609877982aSShri Abhyankar         }
17619877982aSShri Abhyankar         /* U part */
17629877982aSShri Abhyankar         pc3 = b->a + bdiag[i+3]+1;
17639877982aSShri Abhyankar         pj  = b->j + bdiag[i+3]+1;
17649877982aSShri Abhyankar         nz  = bdiag[i+2] - bdiag[i+3] - 1; /* exclude diagonal */
17659877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17669877982aSShri Abhyankar           col    = pj[j];
17679877982aSShri Abhyankar           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
17689877982aSShri Abhyankar         }
17699877982aSShri Abhyankar 
17709877982aSShri Abhyankar         sctx.rs = rs;
17719877982aSShri Abhyankar         sctx.pv = rtmp3[i+2];
17724cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+2);CHKERRQ(ierr);
177307b50cabSHong Zhang         if (sctx.newshift) break;
17749877982aSShri Abhyankar         pc3  = b->a + bdiag[i+2];
17759877982aSShri Abhyankar         *pc3 = 1.0/sctx.pv; /* Mark diag[i+2] */
17769877982aSShri Abhyankar 
17779877982aSShri Abhyankar         /* Now take care of 3rd column of diagonal 4x4 block. */
17789877982aSShri Abhyankar         pc4 = rtmp4 + i+2;
17799877982aSShri Abhyankar         if (*pc4 != 0.0) {
17809877982aSShri Abhyankar           mul4 = (*pc4)*(*pc3); *pc4 = mul4;
17819877982aSShri Abhyankar           pj   = b->j + bdiag[i+3]+1;     /* beginning of U(i+2,:) */
17829877982aSShri Abhyankar           nz   = bdiag[i+2]-bdiag[i+3]-1; /* num of entries in U(i+2,:) excluding diag */
17839877982aSShri Abhyankar           for (j=0; j<nz; j++) {
17849877982aSShri Abhyankar             col         = pj[j];
17859877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp3[col];
17869877982aSShri Abhyankar           }
178728b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
17889877982aSShri Abhyankar         }
17899877982aSShri Abhyankar 
17909877982aSShri Abhyankar         /* finished i+3; check zero pivot, then stick row i+3 into b->a */
17919877982aSShri Abhyankar         rs = 0.0;
17929877982aSShri Abhyankar         /* L part */
17939877982aSShri Abhyankar         pc4 = b->a + bi[i+3];
17949877982aSShri Abhyankar         pj  = b->j + bi[i+3];
17959877982aSShri Abhyankar         nz  = bi[i+4] - bi[i+3];
17969877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17979877982aSShri Abhyankar           col    = pj[j];
17989877982aSShri Abhyankar           pc4[j] = rtmp4[col]; rs += PetscAbsScalar(pc4[j]);
17999877982aSShri Abhyankar         }
18009877982aSShri Abhyankar         /* U part */
18019877982aSShri Abhyankar         pc4 = b->a + bdiag[i+4]+1;
18029877982aSShri Abhyankar         pj  = b->j + bdiag[i+4]+1;
18039877982aSShri Abhyankar         nz  = bdiag[i+3] - bdiag[i+4] - 1; /* exclude diagonal */
18049877982aSShri Abhyankar         for (j=0; j<nz; j++) {
18059877982aSShri Abhyankar           col    = pj[j];
18069877982aSShri Abhyankar           pc4[j] = rtmp4[col]; rs += PetscAbsScalar(pc4[j]);
18079877982aSShri Abhyankar         }
18089877982aSShri Abhyankar 
18099877982aSShri Abhyankar         sctx.rs = rs;
18109877982aSShri Abhyankar         sctx.pv = rtmp4[i+3];
18114cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+3);CHKERRQ(ierr);
181207b50cabSHong Zhang         if (sctx.newshift) break;
18139877982aSShri Abhyankar         pc4  = b->a + bdiag[i+3];
18149877982aSShri Abhyankar         *pc4 = 1.0/sctx.pv; /* Mark diag[i+3] */
18159877982aSShri Abhyankar         break;
181668785679SHong Zhang 
181728f1b45aSHong Zhang       default:
1818e32f2f54SBarry Smith         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Node size not yet supported \n");
181928f1b45aSHong Zhang       }
1820c2b86aeeSHong Zhang       if (sctx.newshift) break; /* break for (inod=0,i=0; inod<node_max; inod++) */
182128f1b45aSHong Zhang       i += nodesz;                 /* Update the row */
182268785679SHong Zhang     }
182328f1b45aSHong Zhang 
182428f1b45aSHong Zhang     /* MatPivotRefine() */
182507b50cabSHong Zhang     if (info->shifttype == (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE && !sctx.newshift && sctx.shift_fraction>0 && sctx.nshift<sctx.nshift_max) {
182628f1b45aSHong Zhang       /*
182728f1b45aSHong Zhang        * if no shift in this attempt & shifting & started shifting & can refine,
182828f1b45aSHong Zhang        * then try lower shift
182928f1b45aSHong Zhang        */
183028f1b45aSHong Zhang       sctx.shift_hi       = sctx.shift_fraction;
183128f1b45aSHong Zhang       sctx.shift_fraction = (sctx.shift_hi+sctx.shift_lo)/2.;
183228f1b45aSHong Zhang       sctx.shift_amount   = sctx.shift_fraction * sctx.shift_top;
183307b50cabSHong Zhang       sctx.newshift       = PETSC_TRUE;
183428f1b45aSHong Zhang       sctx.nshift++;
183528f1b45aSHong Zhang     }
183607b50cabSHong Zhang   } while (sctx.newshift);
183728f1b45aSHong Zhang 
1838eb9baa12SBarry Smith   ierr = PetscFree4(rtmp1,rtmp2,rtmp3,rtmp4);CHKERRQ(ierr);
183968785679SHong Zhang   ierr = PetscFree(tmp_vec2);CHKERRQ(ierr);
184028f1b45aSHong Zhang   ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr);
184128f1b45aSHong Zhang   ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr);
184228f1b45aSHong Zhang 
1843abb87a52SBarry Smith   if (b->inode.size) {
1844abb87a52SBarry Smith     C->ops->solve           = MatSolve_SeqAIJ_Inode;
1845abb87a52SBarry Smith   } else {
1846d3ac4fa3SBarry Smith     C->ops->solve           = MatSolve_SeqAIJ;
1847abb87a52SBarry Smith   }
184828f1b45aSHong Zhang   C->ops->solveadd          = MatSolveAdd_SeqAIJ;
184928f1b45aSHong Zhang   C->ops->solvetranspose    = MatSolveTranspose_SeqAIJ;
185028f1b45aSHong Zhang   C->ops->solvetransposeadd = MatSolveTransposeAdd_SeqAIJ;
185128f1b45aSHong Zhang   C->ops->matsolve          = MatMatSolve_SeqAIJ;
185228f1b45aSHong Zhang   C->assembled              = PETSC_TRUE;
185328f1b45aSHong Zhang   C->preallocated           = PETSC_TRUE;
18542205254eSKarl Rupp 
185528f1b45aSHong Zhang   ierr = PetscLogFlops(C->cmap->n);CHKERRQ(ierr);
185628f1b45aSHong Zhang 
185728f1b45aSHong Zhang   /* MatShiftView(A,info,&sctx) */
185828f1b45aSHong Zhang   if (sctx.nshift) {
1859f4db908eSBarry Smith     if (info->shifttype == (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE) {
186057622a8eSBarry Smith       ierr = PetscInfo4(A,"number of shift_pd tries %D, shift_amount %g, diagonal shifted up by %e fraction top_value %e\n",sctx.nshift,(double)sctx.shift_amount,(double)sctx.shift_fraction,(double)sctx.shift_top);CHKERRQ(ierr);
1861f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_NONZERO) {
186257622a8eSBarry Smith       ierr = PetscInfo2(A,"number of shift_nz tries %D, shift_amount %g\n",sctx.nshift,(double)sctx.shift_amount);CHKERRQ(ierr);
1863f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_INBLOCKS) {
186457622a8eSBarry Smith       ierr = PetscInfo2(A,"number of shift_inblocks applied %D, each shift_amount %g\n",sctx.nshift,(double)info->shiftamount);CHKERRQ(ierr);
186528f1b45aSHong Zhang     }
186628f1b45aSHong Zhang   }
186728f1b45aSHong Zhang   PetscFunctionReturn(0);
186828f1b45aSHong Zhang }
1869628f99d7SShri Abhyankar 
18709a625307SHong Zhang PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode_inplace(Mat B,Mat A,const MatFactorInfo *info)
1871628f99d7SShri Abhyankar {
1872628f99d7SShri Abhyankar   Mat             C     = B;
1873628f99d7SShri Abhyankar   Mat_SeqAIJ      *a    = (Mat_SeqAIJ*)A->data,*b = (Mat_SeqAIJ*)C->data;
1874628f99d7SShri Abhyankar   IS              iscol = b->col,isrow = b->row,isicol = b->icol;
1875628f99d7SShri Abhyankar   PetscErrorCode  ierr;
1876628f99d7SShri Abhyankar   const PetscInt  *r,*ic,*c,*ics;
1877628f99d7SShri Abhyankar   PetscInt        n   = A->rmap->n,*bi = b->i;
1878628f99d7SShri Abhyankar   PetscInt        *bj = b->j,*nbj=b->j +1,*ajtmp,*bjtmp,nz,nz_tmp,row,prow;
18798758e1faSBarry Smith   PetscInt        i,j,idx,*bd = b->diag,node_max,nodesz;
18808758e1faSBarry Smith   PetscInt        *ai = a->i,*aj = a->j;
1881628f99d7SShri Abhyankar   PetscInt        *ns,*tmp_vec1,*tmp_vec2,*nsmap,*pj;
1882628f99d7SShri Abhyankar   PetscScalar     mul1,mul2,mul3,tmp;
1883628f99d7SShri Abhyankar   MatScalar       *pc1,*pc2,*pc3,*ba = b->a,*pv,*rtmp11,*rtmp22,*rtmp33;
1884628f99d7SShri Abhyankar   const MatScalar *v1,*v2,*v3,*aa = a->a,*rtmp1;
1885628f99d7SShri Abhyankar   PetscReal       rs=0.0;
1886628f99d7SShri Abhyankar   FactorShiftCtx  sctx;
1887628f99d7SShri Abhyankar 
1888628f99d7SShri Abhyankar   PetscFunctionBegin;
1889628f99d7SShri Abhyankar   sctx.shift_top      = 0;
1890628f99d7SShri Abhyankar   sctx.nshift_max     = 0;
1891628f99d7SShri Abhyankar   sctx.shift_lo       = 0;
1892628f99d7SShri Abhyankar   sctx.shift_hi       = 0;
1893628f99d7SShri Abhyankar   sctx.shift_fraction = 0;
1894628f99d7SShri Abhyankar 
1895628f99d7SShri Abhyankar   /* if both shift schemes are chosen by user, only use info->shiftpd */
1896f4db908eSBarry Smith   if (info->shifttype==(PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) { /* set sctx.shift_top=max{rs} */
1897628f99d7SShri Abhyankar     sctx.shift_top = 0;
1898628f99d7SShri Abhyankar     for (i=0; i<n; i++) {
1899628f99d7SShri Abhyankar       /* calculate rs = sum(|aij|)-RealPart(aii), amt of shift needed for this row */
1900628f99d7SShri Abhyankar       rs    = 0.0;
1901628f99d7SShri Abhyankar       ajtmp = aj + ai[i];
1902628f99d7SShri Abhyankar       rtmp1 = aa + ai[i];
1903628f99d7SShri Abhyankar       nz    = ai[i+1] - ai[i];
1904628f99d7SShri Abhyankar       for (j=0; j<nz; j++) {
1905628f99d7SShri Abhyankar         if (*ajtmp != i) {
1906628f99d7SShri Abhyankar           rs += PetscAbsScalar(*rtmp1++);
1907628f99d7SShri Abhyankar         } else {
1908628f99d7SShri Abhyankar           rs -= PetscRealPart(*rtmp1++);
1909628f99d7SShri Abhyankar         }
1910628f99d7SShri Abhyankar         ajtmp++;
1911628f99d7SShri Abhyankar       }
1912628f99d7SShri Abhyankar       if (rs>sctx.shift_top) sctx.shift_top = rs;
1913628f99d7SShri Abhyankar     }
1914628f99d7SShri Abhyankar     if (sctx.shift_top == 0.0) sctx.shift_top += 1.e-12;
1915628f99d7SShri Abhyankar     sctx.shift_top *= 1.1;
1916628f99d7SShri Abhyankar     sctx.nshift_max = 5;
1917628f99d7SShri Abhyankar     sctx.shift_lo   = 0.;
1918628f99d7SShri Abhyankar     sctx.shift_hi   = 1.;
1919628f99d7SShri Abhyankar   }
1920628f99d7SShri Abhyankar   sctx.shift_amount = 0;
1921628f99d7SShri Abhyankar   sctx.nshift       = 0;
1922628f99d7SShri Abhyankar 
1923628f99d7SShri Abhyankar   ierr   = ISGetIndices(isrow,&r);CHKERRQ(ierr);
1924628f99d7SShri Abhyankar   ierr   = ISGetIndices(iscol,&c);CHKERRQ(ierr);
1925628f99d7SShri Abhyankar   ierr   = ISGetIndices(isicol,&ic);CHKERRQ(ierr);
19261795a4d1SJed Brown   ierr   = PetscCalloc3(n,&rtmp11,n,&rtmp22,n,&rtmp33);CHKERRQ(ierr);
1927628f99d7SShri Abhyankar   ics    = ic;
1928628f99d7SShri Abhyankar 
1929628f99d7SShri Abhyankar   node_max = a->inode.node_count;
1930628f99d7SShri Abhyankar   ns       = a->inode.size;
1931e7e72b3dSBarry Smith   if (!ns) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Matrix without inode information");
1932628f99d7SShri Abhyankar 
1933628f99d7SShri Abhyankar   /* If max inode size > 3, split it into two inodes.*/
1934628f99d7SShri Abhyankar   /* also map the inode sizes according to the ordering */
1935854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tmp_vec1);CHKERRQ(ierr);
1936628f99d7SShri Abhyankar   for (i=0,j=0; i<node_max; ++i,++j) {
1937628f99d7SShri Abhyankar     if (ns[i]>3) {
1938628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i]/2; /* Assuming ns[i] < =5  */
1939628f99d7SShri Abhyankar       ++j;
1940628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i] - tmp_vec1[j-1];
1941628f99d7SShri Abhyankar     } else {
1942628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i];
1943628f99d7SShri Abhyankar     }
1944628f99d7SShri Abhyankar   }
1945628f99d7SShri Abhyankar   /* Use the correct node_max */
1946628f99d7SShri Abhyankar   node_max = j;
1947628f99d7SShri Abhyankar 
1948628f99d7SShri Abhyankar   /* Now reorder the inode info based on mat re-ordering info */
1949628f99d7SShri Abhyankar   /* First create a row -> inode_size_array_index map */
1950854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&nsmap);CHKERRQ(ierr);
1951854ce69bSBarry Smith   ierr = PetscMalloc1(node_max+1,&tmp_vec2);CHKERRQ(ierr);
1952628f99d7SShri Abhyankar   for (i=0,row=0; i<node_max; i++) {
1953628f99d7SShri Abhyankar     nodesz = tmp_vec1[i];
1954628f99d7SShri Abhyankar     for (j=0; j<nodesz; j++,row++) {
1955628f99d7SShri Abhyankar       nsmap[row] = i;
1956628f99d7SShri Abhyankar     }
1957628f99d7SShri Abhyankar   }
1958628f99d7SShri Abhyankar   /* Using nsmap, create a reordered ns structure */
1959628f99d7SShri Abhyankar   for (i=0,j=0; i< node_max; i++) {
1960628f99d7SShri Abhyankar     nodesz      = tmp_vec1[nsmap[r[j]]];     /* here the reordered row_no is in r[] */
1961628f99d7SShri Abhyankar     tmp_vec2[i] = nodesz;
1962628f99d7SShri Abhyankar     j          += nodesz;
1963628f99d7SShri Abhyankar   }
1964628f99d7SShri Abhyankar   ierr = PetscFree(nsmap);CHKERRQ(ierr);
1965628f99d7SShri Abhyankar   ierr = PetscFree(tmp_vec1);CHKERRQ(ierr);
1966628f99d7SShri Abhyankar   /* Now use the correct ns */
1967628f99d7SShri Abhyankar   ns = tmp_vec2;
1968628f99d7SShri Abhyankar 
1969628f99d7SShri Abhyankar   do {
197007b50cabSHong Zhang     sctx.newshift = PETSC_FALSE;
1971628f99d7SShri Abhyankar     /* Now loop over each block-row, and do the factorization */
1972628f99d7SShri Abhyankar     for (i=0,row=0; i<node_max; i++) {
1973628f99d7SShri Abhyankar       nodesz = ns[i];
1974628f99d7SShri Abhyankar       nz     = bi[row+1] - bi[row];
1975628f99d7SShri Abhyankar       bjtmp  = bj + bi[row];
1976628f99d7SShri Abhyankar 
1977628f99d7SShri Abhyankar       switch (nodesz) {
1978628f99d7SShri Abhyankar       case 1:
1979628f99d7SShri Abhyankar         for  (j=0; j<nz; j++) {
1980628f99d7SShri Abhyankar           idx         = bjtmp[j];
1981628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
1982628f99d7SShri Abhyankar         }
1983628f99d7SShri Abhyankar 
1984628f99d7SShri Abhyankar         /* load in initial (unfactored row) */
1985628f99d7SShri Abhyankar         idx    = r[row];
1986628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
1987628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
1988628f99d7SShri Abhyankar         v1     = aa + ai[idx];
1989628f99d7SShri Abhyankar 
1990628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
1991628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
1992628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
1993628f99d7SShri Abhyankar         }
1994628f99d7SShri Abhyankar         rtmp11[ics[r[row]]] += sctx.shift_amount;
1995628f99d7SShri Abhyankar 
1996628f99d7SShri Abhyankar         prow = *bjtmp++;
1997628f99d7SShri Abhyankar         while (prow < row) {
1998628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
1999628f99d7SShri Abhyankar           if (*pc1 != 0.0) {
2000628f99d7SShri Abhyankar             pv     = ba + bd[prow];
2001628f99d7SShri Abhyankar             pj     = nbj + bd[prow];
2002628f99d7SShri Abhyankar             mul1   = *pc1 * *pv++;
2003628f99d7SShri Abhyankar             *pc1   = mul1;
2004628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
200528b1a77fSLisandro Dalcin             ierr   = PetscLogFlops(1+2*nz_tmp);CHKERRQ(ierr);
2006628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2007628f99d7SShri Abhyankar               tmp          = pv[j];
2008628f99d7SShri Abhyankar               idx          = pj[j];
2009628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2010628f99d7SShri Abhyankar             }
2011628f99d7SShri Abhyankar           }
2012628f99d7SShri Abhyankar           prow = *bjtmp++;
2013628f99d7SShri Abhyankar         }
2014628f99d7SShri Abhyankar         pj  = bj + bi[row];
2015628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2016628f99d7SShri Abhyankar 
2017628f99d7SShri Abhyankar         sctx.pv     = rtmp11[row];
2018628f99d7SShri Abhyankar         rtmp11[row] = 1.0/rtmp11[row]; /* invert diag */
2019628f99d7SShri Abhyankar         rs          = 0.0;
2020628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2021628f99d7SShri Abhyankar           idx    = pj[j];
2022628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx]; /* rtmp11 -> ba */
2023628f99d7SShri Abhyankar           if (idx != row) rs += PetscAbsScalar(pc1[j]);
2024628f99d7SShri Abhyankar         }
2025628f99d7SShri Abhyankar         sctx.rs = rs;
20264cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row);CHKERRQ(ierr);
202707b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2028628f99d7SShri Abhyankar         break;
2029628f99d7SShri Abhyankar 
2030628f99d7SShri Abhyankar       case 2:
2031628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2032628f99d7SShri Abhyankar           idx         = bjtmp[j];
2033628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
2034628f99d7SShri Abhyankar           rtmp22[idx] = 0.0;
2035628f99d7SShri Abhyankar         }
2036628f99d7SShri Abhyankar 
2037628f99d7SShri Abhyankar         /* load in initial (unfactored row) */
2038628f99d7SShri Abhyankar         idx    = r[row];
2039628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
2040628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
2041628f99d7SShri Abhyankar         v1     = aa + ai[idx];
2042628f99d7SShri Abhyankar         v2     = aa + ai[idx+1];
2043628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
2044628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
2045628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
2046628f99d7SShri Abhyankar           rtmp22[idx] = v2[j];
2047628f99d7SShri Abhyankar         }
2048628f99d7SShri Abhyankar         rtmp11[ics[r[row]]]   += sctx.shift_amount;
2049628f99d7SShri Abhyankar         rtmp22[ics[r[row+1]]] += sctx.shift_amount;
2050628f99d7SShri Abhyankar 
2051628f99d7SShri Abhyankar         prow = *bjtmp++;
2052628f99d7SShri Abhyankar         while (prow < row) {
2053628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
2054628f99d7SShri Abhyankar           pc2 = rtmp22 + prow;
2055628f99d7SShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0) {
2056628f99d7SShri Abhyankar             pv   = ba + bd[prow];
2057628f99d7SShri Abhyankar             pj   = nbj + bd[prow];
2058628f99d7SShri Abhyankar             mul1 = *pc1 * *pv;
2059628f99d7SShri Abhyankar             mul2 = *pc2 * *pv;
2060628f99d7SShri Abhyankar             ++pv;
2061628f99d7SShri Abhyankar             *pc1 = mul1;
2062628f99d7SShri Abhyankar             *pc2 = mul2;
2063628f99d7SShri Abhyankar 
2064628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
2065628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2066628f99d7SShri Abhyankar               tmp          = pv[j];
2067628f99d7SShri Abhyankar               idx          = pj[j];
2068628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2069628f99d7SShri Abhyankar               rtmp22[idx] -= mul2 * tmp;
2070628f99d7SShri Abhyankar             }
207128b1a77fSLisandro Dalcin             ierr = PetscLogFlops(2+4*nz_tmp);CHKERRQ(ierr);
2072628f99d7SShri Abhyankar           }
2073628f99d7SShri Abhyankar           prow = *bjtmp++;
2074628f99d7SShri Abhyankar         }
2075628f99d7SShri Abhyankar 
2076628f99d7SShri Abhyankar         /* Now take care of diagonal 2x2 block. Note: prow = row here */
2077628f99d7SShri Abhyankar         pc1 = rtmp11 + prow;
2078628f99d7SShri Abhyankar         pc2 = rtmp22 + prow;
2079628f99d7SShri Abhyankar 
2080628f99d7SShri Abhyankar         sctx.pv = *pc1;
2081628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2082628f99d7SShri Abhyankar         rs      = 0.0;
2083628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2084628f99d7SShri Abhyankar           idx = pj[j];
2085628f99d7SShri Abhyankar           if (idx != prow) rs += PetscAbsScalar(rtmp11[idx]);
2086628f99d7SShri Abhyankar         }
2087628f99d7SShri Abhyankar         sctx.rs = rs;
20884cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row);CHKERRQ(ierr);
208907b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2090628f99d7SShri Abhyankar 
2091628f99d7SShri Abhyankar         if (*pc2 != 0.0) {
2092628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2093628f99d7SShri Abhyankar           mul2   = (*pc2)/(*pc1); /* since diag is not yet inverted.*/
2094628f99d7SShri Abhyankar           *pc2   = mul2;
2095628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2096628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2097628f99d7SShri Abhyankar             idx          = pj[j];
2098628f99d7SShri Abhyankar             tmp          = rtmp11[idx];
2099628f99d7SShri Abhyankar             rtmp22[idx] -= mul2 * tmp;
2100628f99d7SShri Abhyankar           }
210128b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz_tmp);CHKERRQ(ierr);
2102628f99d7SShri Abhyankar         }
2103628f99d7SShri Abhyankar 
2104628f99d7SShri Abhyankar         pj  = bj + bi[row];
2105628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2106628f99d7SShri Abhyankar         pc2 = ba + bi[row+1];
2107628f99d7SShri Abhyankar 
2108628f99d7SShri Abhyankar         sctx.pv       = rtmp22[row+1];
2109628f99d7SShri Abhyankar         rs            = 0.0;
2110628f99d7SShri Abhyankar         rtmp11[row]   = 1.0/rtmp11[row];
2111628f99d7SShri Abhyankar         rtmp22[row+1] = 1.0/rtmp22[row+1];
2112628f99d7SShri Abhyankar         /* copy row entries from dense representation to sparse */
2113628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2114628f99d7SShri Abhyankar           idx    = pj[j];
2115628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx];
2116628f99d7SShri Abhyankar           pc2[j] = rtmp22[idx];
2117628f99d7SShri Abhyankar           if (idx != row+1) rs += PetscAbsScalar(pc2[j]);
2118628f99d7SShri Abhyankar         }
2119628f99d7SShri Abhyankar         sctx.rs = rs;
21204cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row+1);CHKERRQ(ierr);
212107b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2122628f99d7SShri Abhyankar         break;
2123628f99d7SShri Abhyankar 
2124628f99d7SShri Abhyankar       case 3:
2125628f99d7SShri Abhyankar         for  (j=0; j<nz; j++) {
2126628f99d7SShri Abhyankar           idx         = bjtmp[j];
2127628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
2128628f99d7SShri Abhyankar           rtmp22[idx] = 0.0;
2129628f99d7SShri Abhyankar           rtmp33[idx] = 0.0;
2130628f99d7SShri Abhyankar         }
2131628f99d7SShri Abhyankar         /* copy the nonzeros for the 3 rows from sparse representation to dense in rtmp*[] */
2132628f99d7SShri Abhyankar         idx    = r[row];
2133628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
2134628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
2135628f99d7SShri Abhyankar         v1     = aa + ai[idx];
2136628f99d7SShri Abhyankar         v2     = aa + ai[idx+1];
2137628f99d7SShri Abhyankar         v3     = aa + ai[idx+2];
2138628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
2139628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
2140628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
2141628f99d7SShri Abhyankar           rtmp22[idx] = v2[j];
2142628f99d7SShri Abhyankar           rtmp33[idx] = v3[j];
2143628f99d7SShri Abhyankar         }
2144628f99d7SShri Abhyankar         rtmp11[ics[r[row]]]   += sctx.shift_amount;
2145628f99d7SShri Abhyankar         rtmp22[ics[r[row+1]]] += sctx.shift_amount;
2146628f99d7SShri Abhyankar         rtmp33[ics[r[row+2]]] += sctx.shift_amount;
2147628f99d7SShri Abhyankar 
2148628f99d7SShri Abhyankar         /* loop over all pivot row blocks above this row block */
2149628f99d7SShri Abhyankar         prow = *bjtmp++;
2150628f99d7SShri Abhyankar         while (prow < row) {
2151628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
2152628f99d7SShri Abhyankar           pc2 = rtmp22 + prow;
2153628f99d7SShri Abhyankar           pc3 = rtmp33 + prow;
2154628f99d7SShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 !=0.0) {
2155628f99d7SShri Abhyankar             pv   = ba  + bd[prow];
2156628f99d7SShri Abhyankar             pj   = nbj + bd[prow];
2157628f99d7SShri Abhyankar             mul1 = *pc1 * *pv;
2158628f99d7SShri Abhyankar             mul2 = *pc2 * *pv;
2159628f99d7SShri Abhyankar             mul3 = *pc3 * *pv;
2160628f99d7SShri Abhyankar             ++pv;
2161628f99d7SShri Abhyankar             *pc1 = mul1;
2162628f99d7SShri Abhyankar             *pc2 = mul2;
2163628f99d7SShri Abhyankar             *pc3 = mul3;
2164628f99d7SShri Abhyankar 
2165628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
2166628f99d7SShri Abhyankar             /* update this row based on pivot row */
2167628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2168628f99d7SShri Abhyankar               tmp          = pv[j];
2169628f99d7SShri Abhyankar               idx          = pj[j];
2170628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2171628f99d7SShri Abhyankar               rtmp22[idx] -= mul2 * tmp;
2172628f99d7SShri Abhyankar               rtmp33[idx] -= mul3 * tmp;
2173628f99d7SShri Abhyankar             }
217428b1a77fSLisandro Dalcin             ierr = PetscLogFlops(3+6*nz_tmp);CHKERRQ(ierr);
2175628f99d7SShri Abhyankar           }
2176628f99d7SShri Abhyankar           prow = *bjtmp++;
2177628f99d7SShri Abhyankar         }
2178628f99d7SShri Abhyankar 
2179628f99d7SShri Abhyankar         /* Now take care of diagonal 3x3 block in this set of rows */
2180628f99d7SShri Abhyankar         /* note: prow = row here */
2181628f99d7SShri Abhyankar         pc1 = rtmp11 + prow;
2182628f99d7SShri Abhyankar         pc2 = rtmp22 + prow;
2183628f99d7SShri Abhyankar         pc3 = rtmp33 + prow;
2184628f99d7SShri Abhyankar 
2185628f99d7SShri Abhyankar         sctx.pv = *pc1;
2186628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2187628f99d7SShri Abhyankar         rs      = 0.0;
2188628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2189628f99d7SShri Abhyankar           idx = pj[j];
2190628f99d7SShri Abhyankar           if (idx != row) rs += PetscAbsScalar(rtmp11[idx]);
2191628f99d7SShri Abhyankar         }
2192628f99d7SShri Abhyankar         sctx.rs = rs;
21934cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row);CHKERRQ(ierr);
219407b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2195628f99d7SShri Abhyankar 
2196628f99d7SShri Abhyankar         if (*pc2 != 0.0 || *pc3 != 0.0) {
2197628f99d7SShri Abhyankar           mul2   = (*pc2)/(*pc1);
2198628f99d7SShri Abhyankar           mul3   = (*pc3)/(*pc1);
2199628f99d7SShri Abhyankar           *pc2   = mul2;
2200628f99d7SShri Abhyankar           *pc3   = mul3;
2201628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2202628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2203628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2204628f99d7SShri Abhyankar             idx          = pj[j];
2205628f99d7SShri Abhyankar             tmp          = rtmp11[idx];
2206628f99d7SShri Abhyankar             rtmp22[idx] -= mul2 * tmp;
2207628f99d7SShri Abhyankar             rtmp33[idx] -= mul3 * tmp;
2208628f99d7SShri Abhyankar           }
220928b1a77fSLisandro Dalcin           ierr = PetscLogFlops(2+4*nz_tmp);CHKERRQ(ierr);
2210628f99d7SShri Abhyankar         }
2211628f99d7SShri Abhyankar         ++prow;
2212628f99d7SShri Abhyankar 
2213628f99d7SShri Abhyankar         pc2     = rtmp22 + prow;
2214628f99d7SShri Abhyankar         pc3     = rtmp33 + prow;
2215628f99d7SShri Abhyankar         sctx.pv = *pc2;
2216628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2217628f99d7SShri Abhyankar         rs      = 0.0;
2218628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2219628f99d7SShri Abhyankar           idx = pj[j];
2220628f99d7SShri Abhyankar           if (idx != prow) rs += PetscAbsScalar(rtmp22[idx]);
2221628f99d7SShri Abhyankar         }
2222628f99d7SShri Abhyankar         sctx.rs = rs;
22234cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row+1);CHKERRQ(ierr);
222407b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2225628f99d7SShri Abhyankar 
2226628f99d7SShri Abhyankar         if (*pc3 != 0.0) {
2227628f99d7SShri Abhyankar           mul3   = (*pc3)/(*pc2);
2228628f99d7SShri Abhyankar           *pc3   = mul3;
2229628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2230628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2231628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2232628f99d7SShri Abhyankar             idx          = pj[j];
2233628f99d7SShri Abhyankar             tmp          = rtmp22[idx];
2234628f99d7SShri Abhyankar             rtmp33[idx] -= mul3 * tmp;
2235628f99d7SShri Abhyankar           }
223628b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz_tmp);CHKERRQ(ierr);
2237628f99d7SShri Abhyankar         }
2238628f99d7SShri Abhyankar 
2239628f99d7SShri Abhyankar         pj  = bj + bi[row];
2240628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2241628f99d7SShri Abhyankar         pc2 = ba + bi[row+1];
2242628f99d7SShri Abhyankar         pc3 = ba + bi[row+2];
2243628f99d7SShri Abhyankar 
2244628f99d7SShri Abhyankar         sctx.pv       = rtmp33[row+2];
2245628f99d7SShri Abhyankar         rs            = 0.0;
2246628f99d7SShri Abhyankar         rtmp11[row]   = 1.0/rtmp11[row];
2247628f99d7SShri Abhyankar         rtmp22[row+1] = 1.0/rtmp22[row+1];
2248628f99d7SShri Abhyankar         rtmp33[row+2] = 1.0/rtmp33[row+2];
2249628f99d7SShri Abhyankar         /* copy row entries from dense representation to sparse */
2250628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2251628f99d7SShri Abhyankar           idx    = pj[j];
2252628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx];
2253628f99d7SShri Abhyankar           pc2[j] = rtmp22[idx];
2254628f99d7SShri Abhyankar           pc3[j] = rtmp33[idx];
2255628f99d7SShri Abhyankar           if (idx != row+2) rs += PetscAbsScalar(pc3[j]);
2256628f99d7SShri Abhyankar         }
2257628f99d7SShri Abhyankar 
2258628f99d7SShri Abhyankar         sctx.rs = rs;
22594cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row+2);CHKERRQ(ierr);
226007b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2261628f99d7SShri Abhyankar         break;
2262628f99d7SShri Abhyankar 
2263628f99d7SShri Abhyankar       default:
2264e32f2f54SBarry Smith         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Node size not yet supported \n");
2265628f99d7SShri Abhyankar       }
2266628f99d7SShri Abhyankar       row += nodesz;                 /* Update the row */
2267628f99d7SShri Abhyankar     }
2268628f99d7SShri Abhyankar endofwhile:;
226907b50cabSHong Zhang   } while (sctx.newshift);
2270eb9baa12SBarry Smith   ierr = PetscFree3(rtmp11,rtmp22,rtmp33);CHKERRQ(ierr);
2271628f99d7SShri Abhyankar   ierr = PetscFree(tmp_vec2);CHKERRQ(ierr);
2272628f99d7SShri Abhyankar   ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr);
2273628f99d7SShri Abhyankar   ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr);
2274628f99d7SShri Abhyankar   ierr = ISRestoreIndices(iscol,&c);CHKERRQ(ierr);
22752205254eSKarl Rupp 
2276d3ac4fa3SBarry Smith   (B)->ops->solve = MatSolve_SeqAIJ_inplace;
2277628f99d7SShri Abhyankar   /* do not set solve add, since MatSolve_Inode + Add is faster */
2278628f99d7SShri Abhyankar   C->ops->solvetranspose    = MatSolveTranspose_SeqAIJ_inplace;
2279628f99d7SShri Abhyankar   C->ops->solvetransposeadd = MatSolveTransposeAdd_SeqAIJ_inplace;
2280628f99d7SShri Abhyankar   C->assembled              = PETSC_TRUE;
2281628f99d7SShri Abhyankar   C->preallocated           = PETSC_TRUE;
2282628f99d7SShri Abhyankar   if (sctx.nshift) {
2283f4db908eSBarry Smith     if (info->shifttype == (PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) {
228457622a8eSBarry Smith       ierr = PetscInfo4(A,"number of shift_pd tries %D, shift_amount %g, diagonal shifted up by %e fraction top_value %e\n",sctx.nshift,(double)sctx.shift_amount,(double)sctx.shift_fraction,(double)sctx.shift_top);CHKERRQ(ierr);
2285f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_NONZERO) {
228657622a8eSBarry Smith       ierr = PetscInfo2(A,"number of shift_nz tries %D, shift_amount %g\n",sctx.nshift,(double)sctx.shift_amount);CHKERRQ(ierr);
2287628f99d7SShri Abhyankar     }
2288628f99d7SShri Abhyankar   }
2289628f99d7SShri Abhyankar   ierr = PetscLogFlops(C->cmap->n);CHKERRQ(ierr);
2290a02bda8eSBarry Smith   ierr = MatSeqAIJCheckInode(C);CHKERRQ(ierr);
2291628f99d7SShri Abhyankar   PetscFunctionReturn(0);
2292628f99d7SShri Abhyankar }
2293628f99d7SShri Abhyankar 
2294628f99d7SShri Abhyankar 
2295019b515eSShri Abhyankar /* ----------------------------------------------------------- */
229635233d99SShri Abhyankar PetscErrorCode MatSolve_SeqAIJ_Inode(Mat A,Vec bb,Vec xx)
2297019b515eSShri Abhyankar {
2298019b515eSShri Abhyankar   Mat_SeqAIJ        *a    = (Mat_SeqAIJ*)A->data;
2299019b515eSShri Abhyankar   IS                iscol = a->col,isrow = a->row;
2300019b515eSShri Abhyankar   PetscErrorCode    ierr;
2301019b515eSShri Abhyankar   const PetscInt    *r,*c,*rout,*cout;
23028758e1faSBarry Smith   PetscInt          i,j,n = A->rmap->n;
23038758e1faSBarry Smith   PetscInt          node_max,row,nsz,aii,i0,i1,nz;
23048758e1faSBarry Smith   const PetscInt    *ai = a->i,*a_j = a->j,*ns,*vi,*ad,*aj;
2305019b515eSShri Abhyankar   PetscScalar       *x,*tmp,*tmps,tmp0,tmp1;
2306019b515eSShri Abhyankar   PetscScalar       sum1,sum2,sum3,sum4,sum5;
2307019b515eSShri Abhyankar   const MatScalar   *v1,*v2,*v3,*v4,*v5,*a_a = a->a,*aa;
2308019b515eSShri Abhyankar   const PetscScalar *b;
2309019b515eSShri Abhyankar 
2310019b515eSShri Abhyankar   PetscFunctionBegin;
2311e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
2312019b515eSShri Abhyankar   node_max = a->inode.node_count;
2313019b515eSShri Abhyankar   ns       = a->inode.size;     /* Node Size array */
2314019b515eSShri Abhyankar 
23153649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2316019b515eSShri Abhyankar   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2317019b515eSShri Abhyankar   tmp  = a->solve_work;
2318019b515eSShri Abhyankar 
2319019b515eSShri Abhyankar   ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout;
2320019b515eSShri Abhyankar   ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout;
2321019b515eSShri Abhyankar 
2322019b515eSShri Abhyankar   /* forward solve the lower triangular */
2323019b515eSShri Abhyankar   tmps = tmp;
2324019b515eSShri Abhyankar   aa   = a_a;
2325019b515eSShri Abhyankar   aj   = a_j;
2326019b515eSShri Abhyankar   ad   = a->diag;
2327019b515eSShri Abhyankar 
2328019b515eSShri Abhyankar   for (i = 0,row = 0; i< node_max; ++i) {
2329019b515eSShri Abhyankar     nsz = ns[i];
2330019b515eSShri Abhyankar     aii = ai[row];
2331019b515eSShri Abhyankar     v1  = aa + aii;
2332019b515eSShri Abhyankar     vi  = aj + aii;
2333019b515eSShri Abhyankar     nz  = ai[row+1]- ai[row];
2334019b515eSShri Abhyankar 
233598991853SShri Abhyankar     if (i < node_max-1) {
233698991853SShri Abhyankar       /* Prefetch the indices for the next block */
233750d8bf02SJed Brown       PetscPrefetchBlock(aj+ai[row+nsz],ai[row+nsz+1]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA); /* indices */
233898991853SShri Abhyankar       /* Prefetch the data for the next block */
233950d8bf02SJed Brown       PetscPrefetchBlock(aa+ai[row+nsz],ai[row+nsz+ns[i+1]]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA);
234098991853SShri Abhyankar     }
234198991853SShri Abhyankar 
2342019b515eSShri Abhyankar     switch (nsz) {               /* Each loop in 'case' is unrolled */
2343019b515eSShri Abhyankar     case 1:
2344019b515eSShri Abhyankar       sum1 = b[r[row]];
2345019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2346019b515eSShri Abhyankar         i0    = vi[j];
2347019b515eSShri Abhyankar         i1    = vi[j+1];
2348019b515eSShri Abhyankar         tmp0  = tmps[i0];
2349019b515eSShri Abhyankar         tmp1  = tmps[i1];
2350019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0 + v1[j+1]*tmp1;
2351019b515eSShri Abhyankar       }
2352019b515eSShri Abhyankar       if (j == nz-1) {
2353019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2354019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0;
2355019b515eSShri Abhyankar       }
2356019b515eSShri Abhyankar       tmp[row++]=sum1;
2357019b515eSShri Abhyankar       break;
2358019b515eSShri Abhyankar     case 2:
2359019b515eSShri Abhyankar       sum1 = b[r[row]];
2360019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2361019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2362019b515eSShri Abhyankar 
2363019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2364019b515eSShri Abhyankar         i0    = vi[j];
2365019b515eSShri Abhyankar         i1    = vi[j+1];
2366019b515eSShri Abhyankar         tmp0  = tmps[i0];
2367019b515eSShri Abhyankar         tmp1  = tmps[i1];
2368019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2369019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2370019b515eSShri Abhyankar       }
2371019b515eSShri Abhyankar       if (j == nz-1) {
2372019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2373019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2374019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2375019b515eSShri Abhyankar       }
2376019b515eSShri Abhyankar       sum2     -= v2[nz] * sum1;
2377019b515eSShri Abhyankar       tmp[row++]=sum1;
2378019b515eSShri Abhyankar       tmp[row++]=sum2;
2379019b515eSShri Abhyankar       break;
2380019b515eSShri Abhyankar     case 3:
2381019b515eSShri Abhyankar       sum1 = b[r[row]];
2382019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2383019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2384019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2385019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2386019b515eSShri Abhyankar 
2387019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2388019b515eSShri Abhyankar         i0    = vi[j];
2389019b515eSShri Abhyankar         i1    = vi[j+1];
2390019b515eSShri Abhyankar         tmp0  = tmps[i0];
2391019b515eSShri Abhyankar         tmp1  = tmps[i1];
2392019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2393019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2394019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2395019b515eSShri Abhyankar       }
2396019b515eSShri Abhyankar       if (j == nz-1) {
2397019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2398019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2399019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2400019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2401019b515eSShri Abhyankar       }
2402019b515eSShri Abhyankar       sum2     -= v2[nz] * sum1;
2403019b515eSShri Abhyankar       sum3     -= v3[nz] * sum1;
2404019b515eSShri Abhyankar       sum3     -= v3[nz+1] * sum2;
2405019b515eSShri Abhyankar       tmp[row++]=sum1;
2406019b515eSShri Abhyankar       tmp[row++]=sum2;
2407019b515eSShri Abhyankar       tmp[row++]=sum3;
2408019b515eSShri Abhyankar       break;
2409019b515eSShri Abhyankar 
2410019b515eSShri Abhyankar     case 4:
2411019b515eSShri Abhyankar       sum1 = b[r[row]];
2412019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2413019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2414019b515eSShri Abhyankar       sum4 = b[r[row+3]];
2415019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2416019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2417019b515eSShri Abhyankar       v4   = aa + ai[row+3];
2418019b515eSShri Abhyankar 
2419019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2420019b515eSShri Abhyankar         i0    = vi[j];
2421019b515eSShri Abhyankar         i1    = vi[j+1];
2422019b515eSShri Abhyankar         tmp0  = tmps[i0];
2423019b515eSShri Abhyankar         tmp1  = tmps[i1];
2424019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2425019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2426019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2427019b515eSShri Abhyankar         sum4 -= v4[j] * tmp0 + v4[j+1] * tmp1;
2428019b515eSShri Abhyankar       }
2429019b515eSShri Abhyankar       if (j == nz-1) {
2430019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2431019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2432019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2433019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2434019b515eSShri Abhyankar         sum4 -= v4[j] *tmp0;
2435019b515eSShri Abhyankar       }
2436019b515eSShri Abhyankar       sum2 -= v2[nz] * sum1;
2437019b515eSShri Abhyankar       sum3 -= v3[nz] * sum1;
2438019b515eSShri Abhyankar       sum4 -= v4[nz] * sum1;
2439019b515eSShri Abhyankar       sum3 -= v3[nz+1] * sum2;
2440019b515eSShri Abhyankar       sum4 -= v4[nz+1] * sum2;
2441019b515eSShri Abhyankar       sum4 -= v4[nz+2] * sum3;
2442019b515eSShri Abhyankar 
2443019b515eSShri Abhyankar       tmp[row++]=sum1;
2444019b515eSShri Abhyankar       tmp[row++]=sum2;
2445019b515eSShri Abhyankar       tmp[row++]=sum3;
2446019b515eSShri Abhyankar       tmp[row++]=sum4;
2447019b515eSShri Abhyankar       break;
2448019b515eSShri Abhyankar     case 5:
2449019b515eSShri Abhyankar       sum1 = b[r[row]];
2450019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2451019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2452019b515eSShri Abhyankar       sum4 = b[r[row+3]];
2453019b515eSShri Abhyankar       sum5 = b[r[row+4]];
2454019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2455019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2456019b515eSShri Abhyankar       v4   = aa + ai[row+3];
2457019b515eSShri Abhyankar       v5   = aa + ai[row+4];
2458019b515eSShri Abhyankar 
2459019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2460019b515eSShri Abhyankar         i0    = vi[j];
2461019b515eSShri Abhyankar         i1    = vi[j+1];
2462019b515eSShri Abhyankar         tmp0  = tmps[i0];
2463019b515eSShri Abhyankar         tmp1  = tmps[i1];
2464019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2465019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2466019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2467019b515eSShri Abhyankar         sum4 -= v4[j] * tmp0 + v4[j+1] * tmp1;
2468019b515eSShri Abhyankar         sum5 -= v5[j] * tmp0 + v5[j+1] * tmp1;
2469019b515eSShri Abhyankar       }
2470019b515eSShri Abhyankar       if (j == nz-1) {
2471019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2472019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2473019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2474019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2475019b515eSShri Abhyankar         sum4 -= v4[j] *tmp0;
2476019b515eSShri Abhyankar         sum5 -= v5[j] *tmp0;
2477019b515eSShri Abhyankar       }
2478019b515eSShri Abhyankar 
2479019b515eSShri Abhyankar       sum2 -= v2[nz] * sum1;
2480019b515eSShri Abhyankar       sum3 -= v3[nz] * sum1;
2481019b515eSShri Abhyankar       sum4 -= v4[nz] * sum1;
2482019b515eSShri Abhyankar       sum5 -= v5[nz] * sum1;
2483019b515eSShri Abhyankar       sum3 -= v3[nz+1] * sum2;
2484019b515eSShri Abhyankar       sum4 -= v4[nz+1] * sum2;
2485019b515eSShri Abhyankar       sum5 -= v5[nz+1] * sum2;
2486019b515eSShri Abhyankar       sum4 -= v4[nz+2] * sum3;
2487019b515eSShri Abhyankar       sum5 -= v5[nz+2] * sum3;
2488019b515eSShri Abhyankar       sum5 -= v5[nz+3] * sum4;
2489019b515eSShri Abhyankar 
2490019b515eSShri Abhyankar       tmp[row++]=sum1;
2491019b515eSShri Abhyankar       tmp[row++]=sum2;
2492019b515eSShri Abhyankar       tmp[row++]=sum3;
2493019b515eSShri Abhyankar       tmp[row++]=sum4;
2494019b515eSShri Abhyankar       tmp[row++]=sum5;
2495019b515eSShri Abhyankar       break;
2496019b515eSShri Abhyankar     default:
2497e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
2498019b515eSShri Abhyankar     }
2499019b515eSShri Abhyankar   }
2500019b515eSShri Abhyankar   /* backward solve the upper triangular */
2501019b515eSShri Abhyankar   for (i=node_max -1,row = n-1; i>=0; i--) {
2502019b515eSShri Abhyankar     nsz = ns[i];
2503019b515eSShri Abhyankar     aii = ad[row+1] + 1;
2504019b515eSShri Abhyankar     v1  = aa + aii;
2505019b515eSShri Abhyankar     vi  = aj + aii;
2506019b515eSShri Abhyankar     nz  = ad[row]- ad[row+1] - 1;
250798991853SShri Abhyankar 
250898991853SShri Abhyankar     if (i > 0) {
250998991853SShri Abhyankar       /* Prefetch the indices for the next block */
251050d8bf02SJed Brown       PetscPrefetchBlock(aj+ad[row-nsz+1]+1,ad[row-nsz]-ad[row-nsz+1],0,PETSC_PREFETCH_HINT_NTA);
251198991853SShri Abhyankar       /* Prefetch the data for the next block */
251250d8bf02SJed Brown       PetscPrefetchBlock(aa+ad[row-nsz+1]+1,ad[row-nsz-ns[i-1]+1]-ad[row-nsz+1],0,PETSC_PREFETCH_HINT_NTA);
251398991853SShri Abhyankar     }
251498991853SShri Abhyankar 
2515019b515eSShri Abhyankar     switch (nsz) {               /* Each loop in 'case' is unrolled */
2516019b515eSShri Abhyankar     case 1:
2517019b515eSShri Abhyankar       sum1 = tmp[row];
2518019b515eSShri Abhyankar 
2519019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2520019b515eSShri Abhyankar         i0    = vi[j];
2521019b515eSShri Abhyankar         i1    = vi[j+1];
2522019b515eSShri Abhyankar         tmp0  = tmps[i0];
2523019b515eSShri Abhyankar         tmp1  = tmps[i1];
2524019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2525019b515eSShri Abhyankar       }
2526019b515eSShri Abhyankar       if (j == nz-1) {
2527019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2528019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0;
2529019b515eSShri Abhyankar       }
2530019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2531019b515eSShri Abhyankar       break;
2532019b515eSShri Abhyankar     case 2:
2533019b515eSShri Abhyankar       sum1 = tmp[row];
2534019b515eSShri Abhyankar       sum2 = tmp[row-1];
2535019b515eSShri Abhyankar       v2   = aa + ad[row] + 1;
2536019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2537019b515eSShri Abhyankar         i0    = vi[j];
2538019b515eSShri Abhyankar         i1    = vi[j+1];
2539019b515eSShri Abhyankar         tmp0  = tmps[i0];
2540019b515eSShri Abhyankar         tmp1  = tmps[i1];
2541019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2542019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2543019b515eSShri Abhyankar       }
2544019b515eSShri Abhyankar       if (j == nz-1) {
2545019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2546019b515eSShri Abhyankar         sum1 -= v1[j]* tmp0;
2547019b515eSShri Abhyankar         sum2 -= v2[j+1]* tmp0;
2548019b515eSShri Abhyankar       }
2549019b515eSShri Abhyankar 
2550019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2551019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2552019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2553019b515eSShri Abhyankar       break;
2554019b515eSShri Abhyankar     case 3:
2555019b515eSShri Abhyankar       sum1 = tmp[row];
2556019b515eSShri Abhyankar       sum2 = tmp[row -1];
2557019b515eSShri Abhyankar       sum3 = tmp[row -2];
2558019b515eSShri Abhyankar       v2   = aa + ad[row] + 1;
2559019b515eSShri Abhyankar       v3   = aa + ad[row -1] + 1;
2560019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2561019b515eSShri Abhyankar         i0    = vi[j];
2562019b515eSShri Abhyankar         i1    = vi[j+1];
2563019b515eSShri Abhyankar         tmp0  = tmps[i0];
2564019b515eSShri Abhyankar         tmp1  = tmps[i1];
2565019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2566019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2567019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2568019b515eSShri Abhyankar       }
2569019b515eSShri Abhyankar       if (j== nz-1) {
2570019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2571019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2572019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2573019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2574019b515eSShri Abhyankar       }
2575019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2576019b515eSShri Abhyankar       sum2     -= v2[0]* tmp0;
2577019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2578019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2579019b515eSShri Abhyankar       sum3     -= v3[0]* tmp0;
2580019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2581019b515eSShri Abhyankar 
2582019b515eSShri Abhyankar       break;
2583019b515eSShri Abhyankar     case 4:
2584019b515eSShri Abhyankar       sum1 = tmp[row];
2585019b515eSShri Abhyankar       sum2 = tmp[row -1];
2586019b515eSShri Abhyankar       sum3 = tmp[row -2];
2587019b515eSShri Abhyankar       sum4 = tmp[row -3];
2588019b515eSShri Abhyankar       v2   = aa + ad[row]+1;
2589019b515eSShri Abhyankar       v3   = aa + ad[row -1]+1;
2590019b515eSShri Abhyankar       v4   = aa + ad[row -2]+1;
2591019b515eSShri Abhyankar 
2592019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2593019b515eSShri Abhyankar         i0    = vi[j];
2594019b515eSShri Abhyankar         i1    = vi[j+1];
2595019b515eSShri Abhyankar         tmp0  = tmps[i0];
2596019b515eSShri Abhyankar         tmp1  = tmps[i1];
2597019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0   + v1[j+1] * tmp1;
2598019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2599019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2600019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0 + v4[j+4] * tmp1;
2601019b515eSShri Abhyankar       }
2602019b515eSShri Abhyankar       if (j== nz-1) {
2603019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2604019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2605019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2606019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2607019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0;
2608019b515eSShri Abhyankar       }
2609019b515eSShri Abhyankar 
2610019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2611019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2612019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2613019b515eSShri Abhyankar       sum4     -= v4[2] * tmp0;
2614019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2615019b515eSShri Abhyankar       sum3     -= v3[0] * tmp0;
2616019b515eSShri Abhyankar       sum4     -= v4[1] * tmp0;
2617019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2618019b515eSShri Abhyankar       sum4     -= v4[0] * tmp0;
2619019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum4*v4[nz+3]; row--;
2620019b515eSShri Abhyankar       break;
2621019b515eSShri Abhyankar     case 5:
2622019b515eSShri Abhyankar       sum1 = tmp[row];
2623019b515eSShri Abhyankar       sum2 = tmp[row -1];
2624019b515eSShri Abhyankar       sum3 = tmp[row -2];
2625019b515eSShri Abhyankar       sum4 = tmp[row -3];
2626019b515eSShri Abhyankar       sum5 = tmp[row -4];
2627019b515eSShri Abhyankar       v2   = aa + ad[row]+1;
2628019b515eSShri Abhyankar       v3   = aa + ad[row -1]+1;
2629019b515eSShri Abhyankar       v4   = aa + ad[row -2]+1;
2630019b515eSShri Abhyankar       v5   = aa + ad[row -3]+1;
2631019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2632019b515eSShri Abhyankar         i0    = vi[j];
2633019b515eSShri Abhyankar         i1    = vi[j+1];
2634019b515eSShri Abhyankar         tmp0  = tmps[i0];
2635019b515eSShri Abhyankar         tmp1  = tmps[i1];
2636019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2637019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2638019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2639019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0 + v4[j+4] * tmp1;
2640019b515eSShri Abhyankar         sum5 -= v5[j+4] * tmp0 + v5[j+5] * tmp1;
2641019b515eSShri Abhyankar       }
2642019b515eSShri Abhyankar       if (j==nz-1) {
2643019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2644019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2645019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2646019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2647019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0;
2648019b515eSShri Abhyankar         sum5 -= v5[j+4] * tmp0;
2649019b515eSShri Abhyankar       }
2650019b515eSShri Abhyankar 
2651019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2652019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2653019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2654019b515eSShri Abhyankar       sum4     -= v4[2] * tmp0;
2655019b515eSShri Abhyankar       sum5     -= v5[3] * tmp0;
2656019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2657019b515eSShri Abhyankar       sum3     -= v3[0] * tmp0;
2658019b515eSShri Abhyankar       sum4     -= v4[1] * tmp0;
2659019b515eSShri Abhyankar       sum5     -= v5[2] * tmp0;
2660019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2661019b515eSShri Abhyankar       sum4     -= v4[0] * tmp0;
2662019b515eSShri Abhyankar       sum5     -= v5[1] * tmp0;
2663019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum4*v4[nz+3]; row--;
2664019b515eSShri Abhyankar       sum5     -= v5[0] * tmp0;
2665019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum5*v5[nz+4]; row--;
2666019b515eSShri Abhyankar       break;
2667019b515eSShri Abhyankar     default:
2668e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
2669019b515eSShri Abhyankar     }
2670019b515eSShri Abhyankar   }
2671019b515eSShri Abhyankar   ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr);
2672019b515eSShri Abhyankar   ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr);
26733649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2674019b515eSShri Abhyankar   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2675019b515eSShri Abhyankar   ierr = PetscLogFlops(2.0*a->nz - A->cmap->n);CHKERRQ(ierr);
2676019b515eSShri Abhyankar   PetscFunctionReturn(0);
2677019b515eSShri Abhyankar }
2678019b515eSShri Abhyankar 
2679019b515eSShri Abhyankar 
26804c1414c8SBarry Smith /*
26814c1414c8SBarry Smith      Makes a longer coloring[] array and calls the usual code with that
26824c1414c8SBarry Smith */
26834108e4d5SBarry Smith PetscErrorCode MatColoringPatch_SeqAIJ_Inode(Mat mat,PetscInt ncolors,PetscInt nin,ISColoringValue coloring[],ISColoring *iscoloring)
26844c1414c8SBarry Smith {
26854c1414c8SBarry Smith   Mat_SeqAIJ      *a = (Mat_SeqAIJ*)mat->data;
26864c1414c8SBarry Smith   PetscErrorCode  ierr;
2687d0f46423SBarry Smith   PetscInt        n = mat->cmap->n,m = a->inode.node_count,j,*ns = a->inode.size,row;
26884c1414c8SBarry Smith   PetscInt        *colorused,i;
26894c1414c8SBarry Smith   ISColoringValue *newcolor;
26904c1414c8SBarry Smith 
26914c1414c8SBarry Smith   PetscFunctionBegin;
2692854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&newcolor);CHKERRQ(ierr);
26934c1414c8SBarry Smith   /* loop over inodes, marking a color for each column*/
26944c1414c8SBarry Smith   row = 0;
26954c1414c8SBarry Smith   for (i=0; i<m; i++) {
26964c1414c8SBarry Smith     for (j=0; j<ns[i]; j++) {
26974c1414c8SBarry Smith       newcolor[row++] = coloring[i] + j*ncolors;
26984c1414c8SBarry Smith     }
26994c1414c8SBarry Smith   }
27004c1414c8SBarry Smith 
27014c1414c8SBarry Smith   /* eliminate unneeded colors */
27021795a4d1SJed Brown   ierr = PetscCalloc1(5*ncolors,&colorused);CHKERRQ(ierr);
27034c1414c8SBarry Smith   for (i=0; i<n; i++) {
27044c1414c8SBarry Smith     colorused[newcolor[i]] = 1;
27054c1414c8SBarry Smith   }
27064c1414c8SBarry Smith 
27074c1414c8SBarry Smith   for (i=1; i<5*ncolors; i++) {
27084c1414c8SBarry Smith     colorused[i] += colorused[i-1];
27094c1414c8SBarry Smith   }
27104c1414c8SBarry Smith   ncolors = colorused[5*ncolors-1];
27114c1414c8SBarry Smith   for (i=0; i<n; i++) {
271257815681SSatish Balay     newcolor[i] = colorused[newcolor[i]]-1;
27134c1414c8SBarry Smith   }
27144c1414c8SBarry Smith   ierr = PetscFree(colorused);CHKERRQ(ierr);
2715aaf3ff59SMatthew G. Knepley   ierr = ISColoringCreate(PetscObjectComm((PetscObject)mat),ncolors,n,newcolor,PETSC_OWN_POINTER,iscoloring);CHKERRQ(ierr);
27164c1414c8SBarry Smith   ierr = PetscFree(coloring);CHKERRQ(ierr);
27174c1414c8SBarry Smith   PetscFunctionReturn(0);
27184c1414c8SBarry Smith }
27194c1414c8SBarry Smith 
2720af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h>
27212af78befSBarry Smith 
27224108e4d5SBarry Smith PetscErrorCode MatSOR_SeqAIJ_Inode(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
27232af78befSBarry Smith {
27242af78befSBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
27257aaeff0aSMatthew G. Knepley   PetscScalar       sum1 = 0.0,sum2 = 0.0,sum3 = 0.0,sum4 = 0.0,sum5 = 0.0,tmp0,tmp1,tmp2,tmp3;
27265850ef23SBarry Smith   MatScalar         *ibdiag,*bdiag,work[25],*t;
2727a8b09249SBarry Smith   PetscScalar       *x,tmp4,tmp5,x1,x2,x3,x4,x5;
27287aaeff0aSMatthew G. Knepley   const MatScalar   *v = a->a,*v1 = NULL,*v2 = NULL,*v3 = NULL,*v4 = NULL,*v5 = NULL;
27295850ef23SBarry Smith   const PetscScalar *xb, *b;
27307b6c816cSBarry Smith   PetscReal         zeropivot = 100.*PETSC_MACHINE_EPSILON, shift = 0.0;
27312af78befSBarry Smith   PetscErrorCode    ierr;
27328758e1faSBarry Smith   PetscInt          n,m = a->inode.node_count,cnt = 0,i,j,row,i1,i2;
27338758e1faSBarry Smith   PetscInt          sz,k,ipvt[5];
27347b6c816cSBarry Smith   PetscBool         allowzeropivot,zeropivotdetected;
27358758e1faSBarry Smith   const PetscInt    *sizes = a->inode.size,*idx,*diag = a->diag,*ii = a->i;
27362af78befSBarry Smith 
27372af78befSBarry Smith   PetscFunctionBegin;
2738a455e926SHong Zhang   allowzeropivot = PetscNot(A->erroriffailure);
2739e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for omega != 1.0; use -mat_no_inode");
2740422a814eSBarry Smith   if (fshift == -1.0) fshift = 0.0; /* negative fshift indicates do not error on zero diagonal; this code never errors on zero diagonal */
2741e32f2f54SBarry Smith   if (fshift != 0.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for fshift != 0.0; use -mat_no_inode");
27422af78befSBarry Smith 
274371f1c65dSBarry Smith   if (!a->inode.ibdiagvalid) {
27442af78befSBarry Smith     if (!a->inode.ibdiag) {
27452af78befSBarry Smith       /* calculate space needed for diagonal blocks */
27462af78befSBarry Smith       for (i=0; i<m; i++) {
27472af78befSBarry Smith         cnt += sizes[i]*sizes[i];
27482af78befSBarry Smith       }
2749f0d39aaaSBarry Smith       a->inode.bdiagsize = cnt;
27502205254eSKarl Rupp 
2751dcca6d9dSJed Brown       ierr = PetscMalloc3(cnt,&a->inode.ibdiag,cnt,&a->inode.bdiag,A->rmap->n,&a->inode.ssor_work);CHKERRQ(ierr);
275271f1c65dSBarry Smith     }
275371f1c65dSBarry Smith 
275471f1c65dSBarry Smith     /* copy over the diagonal blocks and invert them */
27552af78befSBarry Smith     ibdiag = a->inode.ibdiag;
27562af78befSBarry Smith     bdiag  = a->inode.bdiag;
27572af78befSBarry Smith     cnt    = 0;
27582af78befSBarry Smith     for (i=0, row = 0; i<m; i++) {
27592af78befSBarry Smith       for (j=0; j<sizes[i]; j++) {
2760f0d39aaaSBarry Smith         for (k=0; k<sizes[i]; k++) {
2761f0d39aaaSBarry Smith           bdiag[cnt+k*sizes[i]+j] = v[diag[row+j] - j + k];
2762f0d39aaaSBarry Smith         }
27632af78befSBarry Smith       }
2764a77337e4SBarry Smith       ierr = PetscMemcpy(ibdiag+cnt,bdiag+cnt,sizes[i]*sizes[i]*sizeof(MatScalar));CHKERRQ(ierr);
27652af78befSBarry Smith 
27662af78befSBarry Smith       switch (sizes[i]) {
27672af78befSBarry Smith       case 1:
27682af78befSBarry Smith         /* Create matrix data structure */
27698e0e2a9aSHong Zhang         if (PetscAbsScalar(ibdiag[cnt]) < zeropivot) {
27708e0e2a9aSHong Zhang           if (allowzeropivot) {
27717b6c816cSBarry Smith             A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27727b6c816cSBarry Smith             A->factorerror_zeropivot_value = PetscAbsScalar(ibdiag[cnt]);
27737b6c816cSBarry Smith             A->factorerror_zeropivot_row   = row;
27748e0e2a9aSHong Zhang             ierr = PetscInfo1(A,"Zero pivot, row %D\n",row);CHKERRQ(ierr);
27758e0e2a9aSHong Zhang           } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot on row %D",row);
27768e0e2a9aSHong Zhang         }
277764c62002SMatthew Knepley         ibdiag[cnt] = 1.0/ibdiag[cnt];
27782af78befSBarry Smith         break;
27792af78befSBarry Smith       case 2:
2780a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_2(ibdiag+cnt,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27817b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27822af78befSBarry Smith         break;
27832af78befSBarry Smith       case 3:
2784a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_3(ibdiag+cnt,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27857b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27862af78befSBarry Smith         break;
27872af78befSBarry Smith       case 4:
2788a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_4(ibdiag+cnt,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27897b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27902af78befSBarry Smith         break;
27912af78befSBarry Smith       case 5:
2792a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_5(ibdiag+cnt,ipvt,work,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27937b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27942af78befSBarry Smith         break;
27952af78befSBarry Smith       default:
2796e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
27972af78befSBarry Smith       }
27982af78befSBarry Smith       cnt += sizes[i]*sizes[i];
27992af78befSBarry Smith       row += sizes[i];
28002af78befSBarry Smith     }
280171f1c65dSBarry Smith     a->inode.ibdiagvalid = PETSC_TRUE;
28022af78befSBarry Smith   }
28032af78befSBarry Smith   ibdiag = a->inode.ibdiag;
28042af78befSBarry Smith   bdiag  = a->inode.bdiag;
28055850ef23SBarry Smith   t      = a->inode.ssor_work;
28062af78befSBarry Smith 
28072af78befSBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
28083649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
28095850ef23SBarry Smith   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
28105850ef23SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
28112af78befSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
28122af78befSBarry Smith 
28138862d2efSBarry Smith       for (i=0, row=0; i<m; i++) {
28148862d2efSBarry Smith         sz  = diag[row] - ii[row];
28158862d2efSBarry Smith         v1  = a->a + ii[row];
28168862d2efSBarry Smith         idx = a->j + ii[row];
28178862d2efSBarry Smith 
28184108e4d5SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
28198862d2efSBarry Smith         switch (sizes[i]) {
28208862d2efSBarry Smith         case 1:
28218862d2efSBarry Smith 
28228862d2efSBarry Smith           sum1 = b[row];
28238862d2efSBarry Smith           for (n = 0; n<sz-1; n+=2) {
28248862d2efSBarry Smith             i1    = idx[0];
28258862d2efSBarry Smith             i2    = idx[1];
28268862d2efSBarry Smith             idx  += 2;
28278862d2efSBarry Smith             tmp0  = x[i1];
28288862d2efSBarry Smith             tmp1  = x[i2];
28298862d2efSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
28308862d2efSBarry Smith           }
28318862d2efSBarry Smith 
28328862d2efSBarry Smith           if (n == sz-1) {
2833f0d39aaaSBarry Smith             tmp0  = x[*idx];
2834f0d39aaaSBarry Smith             sum1 -= *v1 * tmp0;
28358862d2efSBarry Smith           }
28365850ef23SBarry Smith           t[row]   = sum1;
28378862d2efSBarry Smith           x[row++] = sum1*(*ibdiag++);
28388862d2efSBarry Smith           break;
2839f0d39aaaSBarry Smith         case 2:
2840f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2841f0d39aaaSBarry Smith           sum1 = b[row];
2842f0d39aaaSBarry Smith           sum2 = b[row+1];
2843f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2844f0d39aaaSBarry Smith             i1    = idx[0];
2845f0d39aaaSBarry Smith             i2    = idx[1];
2846f0d39aaaSBarry Smith             idx  += 2;
2847f0d39aaaSBarry Smith             tmp0  = x[i1];
2848f0d39aaaSBarry Smith             tmp1  = x[i2];
2849f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2850f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2851f0d39aaaSBarry Smith           }
2852f0d39aaaSBarry Smith 
2853f0d39aaaSBarry Smith           if (n == sz-1) {
2854f0d39aaaSBarry Smith             tmp0  = x[*idx];
2855f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2856f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2857f0d39aaaSBarry Smith           }
28585850ef23SBarry Smith           t[row]   = sum1;
28595850ef23SBarry Smith           t[row+1] = sum2;
2860f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[2];
2861f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[3];
2862f0d39aaaSBarry Smith           ibdiag  += 4;
2863f0d39aaaSBarry Smith           break;
2864f0d39aaaSBarry Smith         case 3:
2865f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2866f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2867f0d39aaaSBarry Smith           sum1 = b[row];
2868f0d39aaaSBarry Smith           sum2 = b[row+1];
2869f0d39aaaSBarry Smith           sum3 = b[row+2];
2870f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2871f0d39aaaSBarry Smith             i1    = idx[0];
2872f0d39aaaSBarry Smith             i2    = idx[1];
2873f0d39aaaSBarry Smith             idx  += 2;
2874f0d39aaaSBarry Smith             tmp0  = x[i1];
2875f0d39aaaSBarry Smith             tmp1  = x[i2];
2876f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2877f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2878f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2879f0d39aaaSBarry Smith           }
2880f0d39aaaSBarry Smith 
2881f0d39aaaSBarry Smith           if (n == sz-1) {
2882f0d39aaaSBarry Smith             tmp0  = x[*idx];
2883f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2884f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2885f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2886f0d39aaaSBarry Smith           }
28875850ef23SBarry Smith           t[row]   = sum1;
28885850ef23SBarry Smith           t[row+1] = sum2;
28895850ef23SBarry Smith           t[row+2] = sum3;
2890f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
2891f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
2892f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
2893f0d39aaaSBarry Smith           ibdiag  += 9;
2894f0d39aaaSBarry Smith           break;
2895f0d39aaaSBarry Smith         case 4:
2896f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2897f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2898f0d39aaaSBarry Smith           v4   = a->a + ii[row+3];
2899f0d39aaaSBarry Smith           sum1 = b[row];
2900f0d39aaaSBarry Smith           sum2 = b[row+1];
2901f0d39aaaSBarry Smith           sum3 = b[row+2];
2902f0d39aaaSBarry Smith           sum4 = b[row+3];
2903f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2904f0d39aaaSBarry Smith             i1    = idx[0];
2905f0d39aaaSBarry Smith             i2    = idx[1];
2906f0d39aaaSBarry Smith             idx  += 2;
2907f0d39aaaSBarry Smith             tmp0  = x[i1];
2908f0d39aaaSBarry Smith             tmp1  = x[i2];
2909f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2910f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2911f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2912f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
2913f0d39aaaSBarry Smith           }
2914f0d39aaaSBarry Smith 
2915f0d39aaaSBarry Smith           if (n == sz-1) {
2916f0d39aaaSBarry Smith             tmp0  = x[*idx];
2917f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2918f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2919f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2920f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0;
2921f0d39aaaSBarry Smith           }
29225850ef23SBarry Smith           t[row]   = sum1;
29235850ef23SBarry Smith           t[row+1] = sum2;
29245850ef23SBarry Smith           t[row+2] = sum3;
29255850ef23SBarry Smith           t[row+3] = sum4;
2926f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
2927f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
2928f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
2929f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
2930f0d39aaaSBarry Smith           ibdiag  += 16;
2931f0d39aaaSBarry Smith           break;
2932f0d39aaaSBarry Smith         case 5:
2933f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2934f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2935f0d39aaaSBarry Smith           v4   = a->a + ii[row+3];
2936f0d39aaaSBarry Smith           v5   = a->a + ii[row+4];
2937f0d39aaaSBarry Smith           sum1 = b[row];
2938f0d39aaaSBarry Smith           sum2 = b[row+1];
2939f0d39aaaSBarry Smith           sum3 = b[row+2];
2940f0d39aaaSBarry Smith           sum4 = b[row+3];
2941f0d39aaaSBarry Smith           sum5 = b[row+4];
2942f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2943f0d39aaaSBarry Smith             i1    = idx[0];
2944f0d39aaaSBarry Smith             i2    = idx[1];
2945f0d39aaaSBarry Smith             idx  += 2;
2946f0d39aaaSBarry Smith             tmp0  = x[i1];
2947f0d39aaaSBarry Smith             tmp1  = x[i2];
2948f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2949f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2950f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2951f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
2952f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
2953f0d39aaaSBarry Smith           }
2954f0d39aaaSBarry Smith 
2955f0d39aaaSBarry Smith           if (n == sz-1) {
2956f0d39aaaSBarry Smith             tmp0  = x[*idx];
2957f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2958f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2959f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2960f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0;
2961f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0;
2962f0d39aaaSBarry Smith           }
29635850ef23SBarry Smith           t[row]   = sum1;
29645850ef23SBarry Smith           t[row+1] = sum2;
29655850ef23SBarry Smith           t[row+2] = sum3;
29665850ef23SBarry Smith           t[row+3] = sum4;
29675850ef23SBarry Smith           t[row+4] = sum5;
2968f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
2969f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
2970f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
2971f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
2972f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
2973f0d39aaaSBarry Smith           ibdiag  += 25;
2974f0d39aaaSBarry Smith           break;
29758862d2efSBarry Smith         default:
2976e32f2f54SBarry Smith           SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
29778862d2efSBarry Smith         }
29782af78befSBarry Smith       }
29792af78befSBarry Smith 
29805850ef23SBarry Smith       xb   = t;
29812af78befSBarry Smith       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
29822af78befSBarry Smith     } else xb = b;
29832af78befSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
29842af78befSBarry Smith 
2985f0d39aaaSBarry Smith       ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
2986d0f46423SBarry Smith       for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
2987f0d39aaaSBarry Smith         ibdiag -= sizes[i]*sizes[i];
29888862d2efSBarry Smith         sz      = ii[row+1] - diag[row] - 1;
29898862d2efSBarry Smith         v1      = a->a + diag[row] + 1;
29908862d2efSBarry Smith         idx     = a->j + diag[row] + 1;
29912af78befSBarry Smith 
29924108e4d5SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
29938862d2efSBarry Smith         switch (sizes[i]) {
29948862d2efSBarry Smith         case 1:
29958862d2efSBarry Smith 
29968862d2efSBarry Smith           sum1 = xb[row];
29978862d2efSBarry Smith           for (n = 0; n<sz-1; n+=2) {
29988862d2efSBarry Smith             i1    = idx[0];
29998862d2efSBarry Smith             i2    = idx[1];
30008862d2efSBarry Smith             idx  += 2;
30018862d2efSBarry Smith             tmp0  = x[i1];
30028862d2efSBarry Smith             tmp1  = x[i2];
30038862d2efSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
30048862d2efSBarry Smith           }
30058862d2efSBarry Smith 
30068862d2efSBarry Smith           if (n == sz-1) {
3007f0d39aaaSBarry Smith             tmp0  = x[*idx];
3008f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
30098862d2efSBarry Smith           }
3010f0d39aaaSBarry Smith           x[row--] = sum1*(*ibdiag);
3011f0d39aaaSBarry Smith           break;
3012f0d39aaaSBarry Smith 
3013f0d39aaaSBarry Smith         case 2:
3014f0d39aaaSBarry Smith 
3015f0d39aaaSBarry Smith           sum1 = xb[row];
3016f0d39aaaSBarry Smith           sum2 = xb[row-1];
3017f0d39aaaSBarry Smith           /* note that sum1 is associated with the second of the two rows */
3018f0d39aaaSBarry Smith           v2 = a->a + diag[row-1] + 2;
3019f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3020f0d39aaaSBarry Smith             i1    = idx[0];
3021f0d39aaaSBarry Smith             i2    = idx[1];
3022f0d39aaaSBarry Smith             idx  += 2;
3023f0d39aaaSBarry Smith             tmp0  = x[i1];
3024f0d39aaaSBarry Smith             tmp1  = x[i2];
3025f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3026f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3027f0d39aaaSBarry Smith           }
3028f0d39aaaSBarry Smith 
3029f0d39aaaSBarry Smith           if (n == sz-1) {
3030f0d39aaaSBarry Smith             tmp0  = x[*idx];
3031f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3032f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3033f0d39aaaSBarry Smith           }
3034f0d39aaaSBarry Smith           x[row--] = sum2*ibdiag[1] + sum1*ibdiag[3];
3035f0d39aaaSBarry Smith           x[row--] = sum2*ibdiag[0] + sum1*ibdiag[2];
3036f0d39aaaSBarry Smith           break;
3037f0d39aaaSBarry Smith         case 3:
3038f0d39aaaSBarry Smith 
3039f0d39aaaSBarry Smith           sum1 = xb[row];
3040f0d39aaaSBarry Smith           sum2 = xb[row-1];
3041f0d39aaaSBarry Smith           sum3 = xb[row-2];
3042f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3043f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3044f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3045f0d39aaaSBarry Smith             i1    = idx[0];
3046f0d39aaaSBarry Smith             i2    = idx[1];
3047f0d39aaaSBarry Smith             idx  += 2;
3048f0d39aaaSBarry Smith             tmp0  = x[i1];
3049f0d39aaaSBarry Smith             tmp1  = x[i2];
3050f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3051f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3052f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3053f0d39aaaSBarry Smith           }
3054f0d39aaaSBarry Smith 
3055f0d39aaaSBarry Smith           if (n == sz-1) {
3056f0d39aaaSBarry Smith             tmp0  = x[*idx];
3057f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3058f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3059f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3060f0d39aaaSBarry Smith           }
3061f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3062f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3063f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3064f0d39aaaSBarry Smith           break;
3065f0d39aaaSBarry Smith         case 4:
3066f0d39aaaSBarry Smith 
3067f0d39aaaSBarry Smith           sum1 = xb[row];
3068f0d39aaaSBarry Smith           sum2 = xb[row-1];
3069f0d39aaaSBarry Smith           sum3 = xb[row-2];
3070f0d39aaaSBarry Smith           sum4 = xb[row-3];
3071f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3072f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3073f0d39aaaSBarry Smith           v4   = a->a + diag[row-3] + 4;
3074f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3075f0d39aaaSBarry Smith             i1    = idx[0];
3076f0d39aaaSBarry Smith             i2    = idx[1];
3077f0d39aaaSBarry Smith             idx  += 2;
3078f0d39aaaSBarry Smith             tmp0  = x[i1];
3079f0d39aaaSBarry Smith             tmp1  = x[i2];
3080f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3081f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3082f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3083f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3084f0d39aaaSBarry Smith           }
3085f0d39aaaSBarry Smith 
3086f0d39aaaSBarry Smith           if (n == sz-1) {
3087f0d39aaaSBarry Smith             tmp0  = x[*idx];
3088f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3089f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3090f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3091f0d39aaaSBarry Smith             sum4 -= *v4*tmp0;
3092f0d39aaaSBarry Smith           }
3093f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3094f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3095f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3096f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3097f0d39aaaSBarry Smith           break;
3098f0d39aaaSBarry Smith         case 5:
3099f0d39aaaSBarry Smith 
3100f0d39aaaSBarry Smith           sum1 = xb[row];
3101f0d39aaaSBarry Smith           sum2 = xb[row-1];
3102f0d39aaaSBarry Smith           sum3 = xb[row-2];
3103f0d39aaaSBarry Smith           sum4 = xb[row-3];
3104f0d39aaaSBarry Smith           sum5 = xb[row-4];
3105f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3106f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3107f0d39aaaSBarry Smith           v4   = a->a + diag[row-3] + 4;
3108f0d39aaaSBarry Smith           v5   = a->a + diag[row-4] + 5;
3109f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3110f0d39aaaSBarry Smith             i1    = idx[0];
3111f0d39aaaSBarry Smith             i2    = idx[1];
3112f0d39aaaSBarry Smith             idx  += 2;
3113f0d39aaaSBarry Smith             tmp0  = x[i1];
3114f0d39aaaSBarry Smith             tmp1  = x[i2];
3115f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3116f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3117f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3118f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3119f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
3120f0d39aaaSBarry Smith           }
3121f0d39aaaSBarry Smith 
3122f0d39aaaSBarry Smith           if (n == sz-1) {
3123f0d39aaaSBarry Smith             tmp0  = x[*idx];
3124f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3125f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3126f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3127f0d39aaaSBarry Smith             sum4 -= *v4*tmp0;
3128f0d39aaaSBarry Smith             sum5 -= *v5*tmp0;
3129f0d39aaaSBarry Smith           }
3130f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3131f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3132f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3133f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3134f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
31358862d2efSBarry Smith           break;
31368862d2efSBarry Smith         default:
3137e32f2f54SBarry Smith           SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
31388862d2efSBarry Smith         }
31392af78befSBarry Smith       }
31402af78befSBarry Smith 
31412af78befSBarry Smith       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
31422af78befSBarry Smith     }
31432af78befSBarry Smith     its--;
31445850ef23SBarry Smith   }
31455850ef23SBarry Smith   while (its--) {
31465850ef23SBarry Smith 
31475850ef23SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
3148d876e2b0SMark Adams       for (i=0, row=0, ibdiag = a->inode.ibdiag;
3149d876e2b0SMark Adams            i<m;
3150d876e2b0SMark Adams            row += sizes[i], ibdiag += sizes[i]*sizes[i], i++) {
31515850ef23SBarry Smith 
3152d876e2b0SMark Adams         sz  = diag[row] - ii[row];
31535850ef23SBarry Smith         v1  = a->a + ii[row];
31545850ef23SBarry Smith         idx = a->j + ii[row];
31555850ef23SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
31565850ef23SBarry Smith         switch (sizes[i]) {
31575850ef23SBarry Smith         case 1:
31585850ef23SBarry Smith           sum1 = b[row];
31595850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
31605850ef23SBarry Smith             i1    = idx[0];
31615850ef23SBarry Smith             i2    = idx[1];
31625850ef23SBarry Smith             idx  += 2;
31635850ef23SBarry Smith             tmp0  = x[i1];
31645850ef23SBarry Smith             tmp1  = x[i2];
31655850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
31665850ef23SBarry Smith           }
31675850ef23SBarry Smith           if (n == sz-1) {
3168d876e2b0SMark Adams             tmp0  = x[*idx++];
3169d876e2b0SMark Adams             sum1 -= *v1 * tmp0;
3170d876e2b0SMark Adams             v1++;
3171d876e2b0SMark Adams           }
3172d876e2b0SMark Adams           t[row]   = sum1;
3173d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 1;
3174d876e2b0SMark Adams           idx     = a->j + diag[row] + 1;
3175d876e2b0SMark Adams           v1 += 1;
3176d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3177d876e2b0SMark Adams             i1    = idx[0];
3178d876e2b0SMark Adams             i2    = idx[1];
3179d876e2b0SMark Adams             idx  += 2;
3180d876e2b0SMark Adams             tmp0  = x[i1];
3181d876e2b0SMark Adams             tmp1  = x[i2];
3182d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3183d876e2b0SMark Adams           }
3184d876e2b0SMark Adams           if (n == sz-1) {
3185d876e2b0SMark Adams             tmp0  = x[*idx++];
31865850ef23SBarry Smith             sum1 -= *v1 * tmp0;
31875850ef23SBarry Smith           }
31885850ef23SBarry Smith           /* in MatSOR_SeqAIJ this line would be
31895850ef23SBarry Smith            *
31905850ef23SBarry Smith            * x[row] = (1-omega)*x[row]+(sum1+(*bdiag++)*x[row])*(*ibdiag++);
31915850ef23SBarry Smith            *
31925850ef23SBarry Smith            * but omega == 1, so this becomes
31935850ef23SBarry Smith            *
3194d876e2b0SMark Adams            * x[row] = sum1*(*ibdiag++);
31955850ef23SBarry Smith            *
31965850ef23SBarry Smith            */
3197d876e2b0SMark Adams           x[row] = sum1*(*ibdiag);
31985850ef23SBarry Smith           break;
31995850ef23SBarry Smith         case 2:
32005850ef23SBarry Smith           v2   = a->a + ii[row+1];
32015850ef23SBarry Smith           sum1 = b[row];
32025850ef23SBarry Smith           sum2 = b[row+1];
32035850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
32045850ef23SBarry Smith             i1    = idx[0];
32055850ef23SBarry Smith             i2    = idx[1];
32065850ef23SBarry Smith             idx  += 2;
32075850ef23SBarry Smith             tmp0  = x[i1];
32085850ef23SBarry Smith             tmp1  = x[i2];
32095850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
32105850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
32115850ef23SBarry Smith           }
3212d876e2b0SMark Adams           if (n == sz-1) {
3213d876e2b0SMark Adams             tmp0  = x[*idx++];
3214d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3215d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3216d876e2b0SMark Adams             v1++; v2++;
3217d876e2b0SMark Adams           }
3218d876e2b0SMark Adams           t[row]   = sum1;
3219d876e2b0SMark Adams           t[row+1] = sum2;
3220d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 2;
3221d876e2b0SMark Adams           idx     = a->j + diag[row] + 2;
3222d876e2b0SMark Adams           v1 += 2;
3223d876e2b0SMark Adams           v2 += 2;
3224d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3225d876e2b0SMark Adams             i1    = idx[0];
3226d876e2b0SMark Adams             i2    = idx[1];
3227d876e2b0SMark Adams             idx  += 2;
3228d876e2b0SMark Adams             tmp0  = x[i1];
3229d876e2b0SMark Adams             tmp1  = x[i2];
3230d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3231d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3232d876e2b0SMark Adams           }
32335850ef23SBarry Smith           if (n == sz-1) {
32345850ef23SBarry Smith             tmp0  = x[*idx];
32355850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
32365850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
32375850ef23SBarry Smith           }
3238d876e2b0SMark Adams           x[row] = sum1*ibdiag[0] + sum2*ibdiag[2];
3239d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[3];
32405850ef23SBarry Smith           break;
32415850ef23SBarry Smith         case 3:
32425850ef23SBarry Smith           v2   = a->a + ii[row+1];
32435850ef23SBarry Smith           v3   = a->a + ii[row+2];
32445850ef23SBarry Smith           sum1 = b[row];
32455850ef23SBarry Smith           sum2 = b[row+1];
32465850ef23SBarry Smith           sum3 = b[row+2];
32475850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
32485850ef23SBarry Smith             i1    = idx[0];
32495850ef23SBarry Smith             i2    = idx[1];
32505850ef23SBarry Smith             idx  += 2;
32515850ef23SBarry Smith             tmp0  = x[i1];
32525850ef23SBarry Smith             tmp1  = x[i2];
32535850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
32545850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
32555850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
32565850ef23SBarry Smith           }
3257d876e2b0SMark Adams           if (n == sz-1) {
3258d876e2b0SMark Adams             tmp0  = x[*idx++];
3259d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3260d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3261d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3262d876e2b0SMark Adams             v1++; v2++; v3++;
3263d876e2b0SMark Adams           }
3264d876e2b0SMark Adams           t[row]   = sum1;
3265d876e2b0SMark Adams           t[row+1] = sum2;
3266d876e2b0SMark Adams           t[row+2] = sum3;
3267d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 3;
3268d876e2b0SMark Adams           idx     = a->j + diag[row] + 3;
3269d876e2b0SMark Adams           v1 += 3;
3270d876e2b0SMark Adams           v2 += 3;
3271d876e2b0SMark Adams           v3 += 3;
3272d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3273d876e2b0SMark Adams             i1    = idx[0];
3274d876e2b0SMark Adams             i2    = idx[1];
3275d876e2b0SMark Adams             idx  += 2;
3276d876e2b0SMark Adams             tmp0  = x[i1];
3277d876e2b0SMark Adams             tmp1  = x[i2];
3278d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3279d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3280d876e2b0SMark Adams             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3281d876e2b0SMark Adams           }
32825850ef23SBarry Smith           if (n == sz-1) {
32835850ef23SBarry Smith             tmp0  = x[*idx];
32845850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
32855850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
32865850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
32875850ef23SBarry Smith           }
3288d876e2b0SMark Adams           x[row] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
3289d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
3290d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
32915850ef23SBarry Smith           break;
32925850ef23SBarry Smith         case 4:
32935850ef23SBarry Smith           v2   = a->a + ii[row+1];
32945850ef23SBarry Smith           v3   = a->a + ii[row+2];
32955850ef23SBarry Smith           v4   = a->a + ii[row+3];
32965850ef23SBarry Smith           sum1 = b[row];
32975850ef23SBarry Smith           sum2 = b[row+1];
32985850ef23SBarry Smith           sum3 = b[row+2];
32995850ef23SBarry Smith           sum4 = b[row+3];
33005850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
33015850ef23SBarry Smith             i1    = idx[0];
33025850ef23SBarry Smith             i2    = idx[1];
33035850ef23SBarry Smith             idx  += 2;
33045850ef23SBarry Smith             tmp0  = x[i1];
33055850ef23SBarry Smith             tmp1  = x[i2];
33065850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
33075850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
33085850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
33095850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
33105850ef23SBarry Smith           }
3311d876e2b0SMark Adams           if (n == sz-1) {
3312d876e2b0SMark Adams             tmp0  = x[*idx++];
3313d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3314d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3315d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3316d876e2b0SMark Adams             sum4 -= v4[0] * tmp0;
3317d876e2b0SMark Adams             v1++; v2++; v3++; v4++;
3318d876e2b0SMark Adams           }
3319d876e2b0SMark Adams           t[row]   = sum1;
3320d876e2b0SMark Adams           t[row+1] = sum2;
3321d876e2b0SMark Adams           t[row+2] = sum3;
3322d876e2b0SMark Adams           t[row+3] = sum4;
3323d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 4;
3324d876e2b0SMark Adams           idx     = a->j + diag[row] + 4;
3325d876e2b0SMark Adams           v1 += 4;
3326d876e2b0SMark Adams           v2 += 4;
3327d876e2b0SMark Adams           v3 += 4;
3328d876e2b0SMark Adams           v4 += 4;
3329d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3330d876e2b0SMark Adams             i1    = idx[0];
3331d876e2b0SMark Adams             i2    = idx[1];
3332d876e2b0SMark Adams             idx  += 2;
3333d876e2b0SMark Adams             tmp0  = x[i1];
3334d876e2b0SMark Adams             tmp1  = x[i2];
3335d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3336d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3337d876e2b0SMark Adams             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3338d876e2b0SMark Adams             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3339d876e2b0SMark Adams           }
33405850ef23SBarry Smith           if (n == sz-1) {
33415850ef23SBarry Smith             tmp0  = x[*idx];
33425850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
33435850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
33445850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
33455850ef23SBarry Smith             sum4 -= v4[0] * tmp0;
33465850ef23SBarry Smith           }
3347d876e2b0SMark Adams           x[row] =   sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
3348d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
3349d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
3350d876e2b0SMark Adams           x[row+3] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
33515850ef23SBarry Smith           break;
33525850ef23SBarry Smith         case 5:
33535850ef23SBarry Smith           v2   = a->a + ii[row+1];
33545850ef23SBarry Smith           v3   = a->a + ii[row+2];
33555850ef23SBarry Smith           v4   = a->a + ii[row+3];
33565850ef23SBarry Smith           v5   = a->a + ii[row+4];
33575850ef23SBarry Smith           sum1 = b[row];
33585850ef23SBarry Smith           sum2 = b[row+1];
33595850ef23SBarry Smith           sum3 = b[row+2];
33605850ef23SBarry Smith           sum4 = b[row+3];
33615850ef23SBarry Smith           sum5 = b[row+4];
33625850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
33635850ef23SBarry Smith             i1    = idx[0];
33645850ef23SBarry Smith             i2    = idx[1];
33655850ef23SBarry Smith             idx  += 2;
33665850ef23SBarry Smith             tmp0  = x[i1];
33675850ef23SBarry Smith             tmp1  = x[i2];
33685850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
33695850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
33705850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
33715850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
33725850ef23SBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
33735850ef23SBarry Smith           }
33745850ef23SBarry Smith           if (n == sz-1) {
3375d876e2b0SMark Adams             tmp0  = x[*idx++];
33765850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
33775850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
33785850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
33795850ef23SBarry Smith             sum4 -= v4[0] * tmp0;
33805850ef23SBarry Smith             sum5 -= v5[0] * tmp0;
3381d876e2b0SMark Adams             v1++; v2++; v3++; v4++; v5++;
33825850ef23SBarry Smith           }
3383d876e2b0SMark Adams           t[row]   = sum1;
3384d876e2b0SMark Adams           t[row+1] = sum2;
3385d876e2b0SMark Adams           t[row+2] = sum3;
3386d876e2b0SMark Adams           t[row+3] = sum4;
3387d876e2b0SMark Adams           t[row+4] = sum5;
3388d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 5;
3389d876e2b0SMark Adams           idx     = a->j + diag[row] + 5;
3390d876e2b0SMark Adams           v1 += 5;
3391d876e2b0SMark Adams           v2 += 5;
3392d876e2b0SMark Adams           v3 += 5;
3393d876e2b0SMark Adams           v4 += 5;
3394d876e2b0SMark Adams           v5 += 5;
33955850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
33965850ef23SBarry Smith             i1    = idx[0];
33975850ef23SBarry Smith             i2    = idx[1];
33985850ef23SBarry Smith             idx  += 2;
33995850ef23SBarry Smith             tmp0  = x[i1];
34005850ef23SBarry Smith             tmp1  = x[i2];
34015850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
34025850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
34035850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
34045850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
34055850ef23SBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
34065850ef23SBarry Smith           }
34075850ef23SBarry Smith           if (n == sz-1) {
34085850ef23SBarry Smith             tmp0  = x[*idx];
3409d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3410d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3411d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3412d876e2b0SMark Adams             sum4 -= v4[0] * tmp0;
3413d876e2b0SMark Adams             sum5 -= v5[0] * tmp0;
34145850ef23SBarry Smith           }
3415d876e2b0SMark Adams           x[row]   = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
3416d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
3417d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
3418d876e2b0SMark Adams           x[row+3] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
3419d876e2b0SMark Adams           x[row+4] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
3420d876e2b0SMark Adams           break;
3421d876e2b0SMark Adams         default:
3422d876e2b0SMark Adams           SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
3423d876e2b0SMark Adams         }
3424d876e2b0SMark Adams       }
3425d876e2b0SMark Adams       xb   = t;
3426d876e2b0SMark Adams       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);  /* undercounts diag inverse */
3427d876e2b0SMark Adams     } else xb = b;
3428d876e2b0SMark Adams 
3429d876e2b0SMark Adams     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
3430d876e2b0SMark Adams 
3431d876e2b0SMark Adams       ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
3432d876e2b0SMark Adams       for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
3433d876e2b0SMark Adams         ibdiag -= sizes[i]*sizes[i];
3434d876e2b0SMark Adams 
3435d876e2b0SMark Adams         /* set RHS */
3436d876e2b0SMark Adams         if (xb == b) {
3437d876e2b0SMark Adams           /* whole (old way) */
3438d876e2b0SMark Adams           sz      = ii[row+1] - ii[row];
3439d876e2b0SMark Adams           idx     = a->j + ii[row];
3440d876e2b0SMark Adams           switch (sizes[i]) {
3441d876e2b0SMark Adams           case 5:
3442d876e2b0SMark Adams             v5      = a->a + ii[row-4];
3443d876e2b0SMark Adams           case 4: /* fall through */
3444d876e2b0SMark Adams             v4      = a->a + ii[row-3];
3445d876e2b0SMark Adams           case 3:
3446d876e2b0SMark Adams             v3      = a->a + ii[row-2];
3447d876e2b0SMark Adams           case 2:
3448d876e2b0SMark Adams             v2      = a->a + ii[row-1];
3449d876e2b0SMark Adams           case 1:
3450d876e2b0SMark Adams             v1      = a->a + ii[row];
3451d876e2b0SMark Adams             break;
3452d876e2b0SMark Adams           default:
3453d876e2b0SMark Adams             SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
3454d876e2b0SMark Adams           }
3455d876e2b0SMark Adams         } else {
3456d876e2b0SMark Adams           /* upper, no diag */
3457d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 1;
3458d876e2b0SMark Adams           idx     = a->j + diag[row] + 1;
3459d876e2b0SMark Adams           switch (sizes[i]) {
3460d876e2b0SMark Adams           case 5:
3461d876e2b0SMark Adams             v5      = a->a + diag[row-4] + 5;
3462d876e2b0SMark Adams           case 4: /* fall through */
3463d876e2b0SMark Adams             v4      = a->a + diag[row-3] + 4;
3464d876e2b0SMark Adams           case 3:
3465d876e2b0SMark Adams             v3      = a->a + diag[row-2] + 3;
3466d876e2b0SMark Adams           case 2:
3467d876e2b0SMark Adams             v2      = a->a + diag[row-1] + 2;
3468d876e2b0SMark Adams           case 1:
3469d876e2b0SMark Adams             v1      = a->a + diag[row] + 1;
3470d876e2b0SMark Adams           }
3471d876e2b0SMark Adams         }
3472d876e2b0SMark Adams         /* set sum */
3473d876e2b0SMark Adams         switch (sizes[i]) {
3474d876e2b0SMark Adams         case 5:
3475d876e2b0SMark Adams           sum5 = xb[row-4];
3476d876e2b0SMark Adams         case 4: /* fall through */
3477d876e2b0SMark Adams           sum4 = xb[row-3];
3478d876e2b0SMark Adams         case 3:
3479d876e2b0SMark Adams           sum3 = xb[row-2];
3480d876e2b0SMark Adams         case 2:
3481d876e2b0SMark Adams           sum2 = xb[row-1];
3482d876e2b0SMark Adams         case 1:
3483d876e2b0SMark Adams           /* note that sum1 is associated with the last row */
3484d876e2b0SMark Adams           sum1 = xb[row];
3485d876e2b0SMark Adams         }
3486d876e2b0SMark Adams         /* do sums */
3487d876e2b0SMark Adams         for (n = 0; n<sz-1; n+=2) {
3488d876e2b0SMark Adams             i1    = idx[0];
3489d876e2b0SMark Adams             i2    = idx[1];
3490d876e2b0SMark Adams             idx  += 2;
3491d876e2b0SMark Adams             tmp0  = x[i1];
3492d876e2b0SMark Adams             tmp1  = x[i2];
3493d876e2b0SMark Adams             switch (sizes[i]) {
3494d876e2b0SMark Adams             case 5:
3495d876e2b0SMark Adams               sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
3496d876e2b0SMark Adams             case 4: /* fall through */
3497d876e2b0SMark Adams               sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3498d876e2b0SMark Adams             case 3:
3499d876e2b0SMark Adams               sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3500d876e2b0SMark Adams             case 2:
3501d876e2b0SMark Adams               sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3502d876e2b0SMark Adams             case 1:
3503d876e2b0SMark Adams               sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3504d876e2b0SMark Adams             }
3505d876e2b0SMark Adams         }
3506d876e2b0SMark Adams         /* ragged edge */
3507d876e2b0SMark Adams         if (n == sz-1) {
3508d876e2b0SMark Adams           tmp0  = x[*idx];
3509d876e2b0SMark Adams           switch (sizes[i]) {
3510d876e2b0SMark Adams           case 5:
3511d876e2b0SMark Adams             sum5 -= *v5*tmp0;
3512d876e2b0SMark Adams           case 4: /* fall through */
3513d876e2b0SMark Adams             sum4 -= *v4*tmp0;
3514d876e2b0SMark Adams           case 3:
3515d876e2b0SMark Adams             sum3 -= *v3*tmp0;
3516d876e2b0SMark Adams           case 2:
3517d876e2b0SMark Adams             sum2 -= *v2*tmp0;
3518d876e2b0SMark Adams           case 1:
3519d876e2b0SMark Adams             sum1 -= *v1*tmp0;
3520d876e2b0SMark Adams           }
3521d876e2b0SMark Adams         }
3522d876e2b0SMark Adams         /* update */
3523d876e2b0SMark Adams         if (xb == b) {
3524d876e2b0SMark Adams           /* whole (old way) w/ diag */
3525d876e2b0SMark Adams           switch (sizes[i]) {
3526d876e2b0SMark Adams           case 5:
35275850ef23SBarry Smith             x[row--] += sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
35285850ef23SBarry Smith             x[row--] += sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
35295850ef23SBarry Smith             x[row--] += sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
35305850ef23SBarry Smith             x[row--] += sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
35315850ef23SBarry Smith             x[row--] += sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
35325850ef23SBarry Smith             break;
3533d876e2b0SMark Adams           case 4:
3534d876e2b0SMark Adams             x[row--] += sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3535d876e2b0SMark Adams             x[row--] += sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3536d876e2b0SMark Adams             x[row--] += sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3537d876e2b0SMark Adams             x[row--] += sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3538d876e2b0SMark Adams             break;
3539d876e2b0SMark Adams           case 3:
3540d876e2b0SMark Adams             x[row--] += sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3541d876e2b0SMark Adams             x[row--] += sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3542d876e2b0SMark Adams             x[row--] += sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3543d876e2b0SMark Adams             break;
3544d876e2b0SMark Adams           case 2:
3545d876e2b0SMark Adams             x[row--] += sum2*ibdiag[1] + sum1*ibdiag[3];
3546d876e2b0SMark Adams             x[row--] += sum2*ibdiag[0] + sum1*ibdiag[2];
3547d876e2b0SMark Adams             break;
3548d876e2b0SMark Adams           case 1:
3549d876e2b0SMark Adams             x[row--] += sum1*(*ibdiag);
3550d876e2b0SMark Adams             break;
3551d876e2b0SMark Adams           }
3552d876e2b0SMark Adams         } else {
3553d876e2b0SMark Adams           /* no diag so set =  */
3554d876e2b0SMark Adams           switch (sizes[i]) {
3555d876e2b0SMark Adams           case 5:
3556d876e2b0SMark Adams             x[row--] = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3557d876e2b0SMark Adams             x[row--] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3558d876e2b0SMark Adams             x[row--] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3559d876e2b0SMark Adams             x[row--] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3560d876e2b0SMark Adams             x[row--] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
3561d876e2b0SMark Adams             break;
3562d876e2b0SMark Adams           case 4:
3563d876e2b0SMark Adams             x[row--] = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3564d876e2b0SMark Adams             x[row--] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3565d876e2b0SMark Adams             x[row--] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3566d876e2b0SMark Adams             x[row--] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3567d876e2b0SMark Adams             break;
3568d876e2b0SMark Adams           case 3:
3569d876e2b0SMark Adams             x[row--] = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3570d876e2b0SMark Adams             x[row--] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3571d876e2b0SMark Adams             x[row--] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3572d876e2b0SMark Adams             break;
3573d876e2b0SMark Adams           case 2:
3574d876e2b0SMark Adams             x[row--] = sum2*ibdiag[1] + sum1*ibdiag[3];
3575d876e2b0SMark Adams             x[row--] = sum2*ibdiag[0] + sum1*ibdiag[2];
3576d876e2b0SMark Adams             break;
3577d876e2b0SMark Adams           case 1:
3578d876e2b0SMark Adams             x[row--] = sum1*(*ibdiag);
3579d876e2b0SMark Adams             break;
35805850ef23SBarry Smith           }
35815850ef23SBarry Smith         }
3582d876e2b0SMark Adams       }
3583d876e2b0SMark Adams       if (xb == b) {
35845850ef23SBarry Smith         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
3585d876e2b0SMark Adams       } else {
3586d876e2b0SMark Adams         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper, undercounts diag inverse */
3587d876e2b0SMark Adams       }
35885850ef23SBarry Smith     }
35892af78befSBarry Smith   }
359089c6957cSBarry Smith   if (flag & SOR_EISENSTAT) {
359189c6957cSBarry Smith     /*
359289c6957cSBarry Smith           Apply  (U + D)^-1  where D is now the block diagonal
359389c6957cSBarry Smith     */
359489c6957cSBarry Smith     ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
359589c6957cSBarry Smith     for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
359689c6957cSBarry Smith       ibdiag -= sizes[i]*sizes[i];
359789c6957cSBarry Smith       sz      = ii[row+1] - diag[row] - 1;
359889c6957cSBarry Smith       v1      = a->a + diag[row] + 1;
359989c6957cSBarry Smith       idx     = a->j + diag[row] + 1;
36004108e4d5SBarry Smith       /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
360189c6957cSBarry Smith       switch (sizes[i]) {
360289c6957cSBarry Smith       case 1:
360389c6957cSBarry Smith 
360489c6957cSBarry Smith         sum1 = b[row];
360589c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
360689c6957cSBarry Smith           i1    = idx[0];
360789c6957cSBarry Smith           i2    = idx[1];
360889c6957cSBarry Smith           idx  += 2;
360989c6957cSBarry Smith           tmp0  = x[i1];
361089c6957cSBarry Smith           tmp1  = x[i2];
361189c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
361289c6957cSBarry Smith         }
361389c6957cSBarry Smith 
361489c6957cSBarry Smith         if (n == sz-1) {
361589c6957cSBarry Smith           tmp0  = x[*idx];
361689c6957cSBarry Smith           sum1 -= *v1*tmp0;
361789c6957cSBarry Smith         }
3618938d4eb3SBarry Smith         x[row] = sum1*(*ibdiag);row--;
361989c6957cSBarry Smith         break;
362089c6957cSBarry Smith 
362189c6957cSBarry Smith       case 2:
362289c6957cSBarry Smith 
362389c6957cSBarry Smith         sum1 = b[row];
362489c6957cSBarry Smith         sum2 = b[row-1];
362589c6957cSBarry Smith         /* note that sum1 is associated with the second of the two rows */
362689c6957cSBarry Smith         v2 = a->a + diag[row-1] + 2;
362789c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
362889c6957cSBarry Smith           i1    = idx[0];
362989c6957cSBarry Smith           i2    = idx[1];
363089c6957cSBarry Smith           idx  += 2;
363189c6957cSBarry Smith           tmp0  = x[i1];
363289c6957cSBarry Smith           tmp1  = x[i2];
363389c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
363489c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
363589c6957cSBarry Smith         }
363689c6957cSBarry Smith 
363789c6957cSBarry Smith         if (n == sz-1) {
363889c6957cSBarry Smith           tmp0  = x[*idx];
363989c6957cSBarry Smith           sum1 -= *v1*tmp0;
364089c6957cSBarry Smith           sum2 -= *v2*tmp0;
364189c6957cSBarry Smith         }
3642938d4eb3SBarry Smith         x[row]   = sum2*ibdiag[1] + sum1*ibdiag[3];
3643938d4eb3SBarry Smith         x[row-1] = sum2*ibdiag[0] + sum1*ibdiag[2];
3644938d4eb3SBarry Smith         row     -= 2;
364589c6957cSBarry Smith         break;
364689c6957cSBarry Smith       case 3:
364789c6957cSBarry Smith 
364889c6957cSBarry Smith         sum1 = b[row];
364989c6957cSBarry Smith         sum2 = b[row-1];
365089c6957cSBarry Smith         sum3 = b[row-2];
365189c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
365289c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
365389c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
365489c6957cSBarry Smith           i1    = idx[0];
365589c6957cSBarry Smith           i2    = idx[1];
365689c6957cSBarry Smith           idx  += 2;
365789c6957cSBarry Smith           tmp0  = x[i1];
365889c6957cSBarry Smith           tmp1  = x[i2];
365989c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
366089c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
366189c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
366289c6957cSBarry Smith         }
366389c6957cSBarry Smith 
366489c6957cSBarry Smith         if (n == sz-1) {
366589c6957cSBarry Smith           tmp0  = x[*idx];
366689c6957cSBarry Smith           sum1 -= *v1*tmp0;
366789c6957cSBarry Smith           sum2 -= *v2*tmp0;
366889c6957cSBarry Smith           sum3 -= *v3*tmp0;
366989c6957cSBarry Smith         }
3670938d4eb3SBarry Smith         x[row]   = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3671938d4eb3SBarry Smith         x[row-1] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3672938d4eb3SBarry Smith         x[row-2] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3673938d4eb3SBarry Smith         row     -= 3;
367489c6957cSBarry Smith         break;
367589c6957cSBarry Smith       case 4:
367689c6957cSBarry Smith 
367789c6957cSBarry Smith         sum1 = b[row];
367889c6957cSBarry Smith         sum2 = b[row-1];
367989c6957cSBarry Smith         sum3 = b[row-2];
368089c6957cSBarry Smith         sum4 = b[row-3];
368189c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
368289c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
368389c6957cSBarry Smith         v4   = a->a + diag[row-3] + 4;
368489c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
368589c6957cSBarry Smith           i1    = idx[0];
368689c6957cSBarry Smith           i2    = idx[1];
368789c6957cSBarry Smith           idx  += 2;
368889c6957cSBarry Smith           tmp0  = x[i1];
368989c6957cSBarry Smith           tmp1  = x[i2];
369089c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
369189c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
369289c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
369389c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
369489c6957cSBarry Smith         }
369589c6957cSBarry Smith 
369689c6957cSBarry Smith         if (n == sz-1) {
369789c6957cSBarry Smith           tmp0  = x[*idx];
369889c6957cSBarry Smith           sum1 -= *v1*tmp0;
369989c6957cSBarry Smith           sum2 -= *v2*tmp0;
370089c6957cSBarry Smith           sum3 -= *v3*tmp0;
370189c6957cSBarry Smith           sum4 -= *v4*tmp0;
370289c6957cSBarry Smith         }
3703938d4eb3SBarry Smith         x[row]   = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3704938d4eb3SBarry Smith         x[row-1] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3705938d4eb3SBarry Smith         x[row-2] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3706938d4eb3SBarry Smith         x[row-3] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3707938d4eb3SBarry Smith         row     -= 4;
370889c6957cSBarry Smith         break;
370989c6957cSBarry Smith       case 5:
371089c6957cSBarry Smith 
371189c6957cSBarry Smith         sum1 = b[row];
371289c6957cSBarry Smith         sum2 = b[row-1];
371389c6957cSBarry Smith         sum3 = b[row-2];
371489c6957cSBarry Smith         sum4 = b[row-3];
371589c6957cSBarry Smith         sum5 = b[row-4];
371689c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
371789c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
371889c6957cSBarry Smith         v4   = a->a + diag[row-3] + 4;
371989c6957cSBarry Smith         v5   = a->a + diag[row-4] + 5;
372089c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
372189c6957cSBarry Smith           i1    = idx[0];
372289c6957cSBarry Smith           i2    = idx[1];
372389c6957cSBarry Smith           idx  += 2;
372489c6957cSBarry Smith           tmp0  = x[i1];
372589c6957cSBarry Smith           tmp1  = x[i2];
372689c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
372789c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
372889c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
372989c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
373089c6957cSBarry Smith           sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
373189c6957cSBarry Smith         }
373289c6957cSBarry Smith 
373389c6957cSBarry Smith         if (n == sz-1) {
373489c6957cSBarry Smith           tmp0  = x[*idx];
373589c6957cSBarry Smith           sum1 -= *v1*tmp0;
373689c6957cSBarry Smith           sum2 -= *v2*tmp0;
373789c6957cSBarry Smith           sum3 -= *v3*tmp0;
373889c6957cSBarry Smith           sum4 -= *v4*tmp0;
373989c6957cSBarry Smith           sum5 -= *v5*tmp0;
374089c6957cSBarry Smith         }
3741938d4eb3SBarry Smith         x[row]   = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3742938d4eb3SBarry Smith         x[row-1] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3743938d4eb3SBarry Smith         x[row-2] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3744938d4eb3SBarry Smith         x[row-3] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3745938d4eb3SBarry Smith         x[row-4] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
3746938d4eb3SBarry Smith         row     -= 5;
374789c6957cSBarry Smith         break;
374889c6957cSBarry Smith       default:
3749e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
375089c6957cSBarry Smith       }
375189c6957cSBarry Smith     }
375289c6957cSBarry Smith     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
375389c6957cSBarry Smith 
375489c6957cSBarry Smith     /*
375589c6957cSBarry Smith            t = b - D x    where D is the block diagonal
375689c6957cSBarry Smith     */
375789c6957cSBarry Smith     cnt = 0;
375889c6957cSBarry Smith     for (i=0, row=0; i<m; i++) {
375989c6957cSBarry Smith       switch (sizes[i]) {
376089c6957cSBarry Smith       case 1:
376189c6957cSBarry Smith         t[row] = b[row] - bdiag[cnt++]*x[row]; row++;
376289c6957cSBarry Smith         break;
376389c6957cSBarry Smith       case 2:
376489c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1];
376589c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+2];
376689c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+3];
376789c6957cSBarry Smith         t[row]   = b[row] - tmp1;
376889c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2; row += 2;
376989c6957cSBarry Smith         cnt     += 4;
377089c6957cSBarry Smith         break;
377189c6957cSBarry Smith       case 3:
377289c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2];
377389c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+3] + x3*bdiag[cnt+6];
377489c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+4] + x3*bdiag[cnt+7];
377589c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+5] + x3*bdiag[cnt+8];
377689c6957cSBarry Smith         t[row]   = b[row] - tmp1;
377789c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
377889c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3; row += 3;
377989c6957cSBarry Smith         cnt     += 9;
378089c6957cSBarry Smith         break;
378189c6957cSBarry Smith       case 4:
378289c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2]; x4 = x[row+3];
378389c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+4] + x3*bdiag[cnt+8] + x4*bdiag[cnt+12];
378489c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+5] + x3*bdiag[cnt+9] + x4*bdiag[cnt+13];
378589c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+6] + x3*bdiag[cnt+10] + x4*bdiag[cnt+14];
378689c6957cSBarry Smith         tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+7] + x3*bdiag[cnt+11] + x4*bdiag[cnt+15];
378789c6957cSBarry Smith         t[row]   = b[row] - tmp1;
378889c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
378989c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3;
379089c6957cSBarry Smith         t[row+3] = b[row+3] - tmp4; row += 4;
379189c6957cSBarry Smith         cnt     += 16;
379289c6957cSBarry Smith         break;
379389c6957cSBarry Smith       case 5:
379489c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2]; x4 = x[row+3]; x5 = x[row+4];
379589c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+5] + x3*bdiag[cnt+10] + x4*bdiag[cnt+15] + x5*bdiag[cnt+20];
379689c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+6] + x3*bdiag[cnt+11] + x4*bdiag[cnt+16] + x5*bdiag[cnt+21];
379789c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+7] + x3*bdiag[cnt+12] + x4*bdiag[cnt+17] + x5*bdiag[cnt+22];
379889c6957cSBarry Smith         tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+8] + x3*bdiag[cnt+13] + x4*bdiag[cnt+18] + x5*bdiag[cnt+23];
379989c6957cSBarry Smith         tmp5     = x1*bdiag[cnt+4] + x2*bdiag[cnt+9] + x3*bdiag[cnt+14] + x4*bdiag[cnt+19] + x5*bdiag[cnt+24];
380089c6957cSBarry Smith         t[row]   = b[row] - tmp1;
380189c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
380289c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3;
380389c6957cSBarry Smith         t[row+3] = b[row+3] - tmp4;
380489c6957cSBarry Smith         t[row+4] = b[row+4] - tmp5;row += 5;
380589c6957cSBarry Smith         cnt     += 25;
380689c6957cSBarry Smith         break;
380789c6957cSBarry Smith       default:
3808e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
380989c6957cSBarry Smith       }
381089c6957cSBarry Smith     }
381189c6957cSBarry Smith     ierr = PetscLogFlops(m);CHKERRQ(ierr);
381289c6957cSBarry Smith 
381389c6957cSBarry Smith 
381489c6957cSBarry Smith 
381589c6957cSBarry Smith     /*
381689c6957cSBarry Smith           Apply (L + D)^-1 where D is the block diagonal
381789c6957cSBarry Smith     */
381889c6957cSBarry Smith     for (i=0, row=0; i<m; i++) {
381989c6957cSBarry Smith       sz  = diag[row] - ii[row];
382089c6957cSBarry Smith       v1  = a->a + ii[row];
382189c6957cSBarry Smith       idx = a->j + ii[row];
38224108e4d5SBarry Smith       /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
382389c6957cSBarry Smith       switch (sizes[i]) {
382489c6957cSBarry Smith       case 1:
382589c6957cSBarry Smith 
382689c6957cSBarry Smith         sum1 = t[row];
382789c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
382889c6957cSBarry Smith           i1    = idx[0];
382989c6957cSBarry Smith           i2    = idx[1];
383089c6957cSBarry Smith           idx  += 2;
383189c6957cSBarry Smith           tmp0  = t[i1];
383289c6957cSBarry Smith           tmp1  = t[i2];
383389c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
383489c6957cSBarry Smith         }
383589c6957cSBarry Smith 
383689c6957cSBarry Smith         if (n == sz-1) {
383789c6957cSBarry Smith           tmp0  = t[*idx];
383889c6957cSBarry Smith           sum1 -= *v1 * tmp0;
383989c6957cSBarry Smith         }
384089c6957cSBarry Smith         x[row] += t[row] = sum1*(*ibdiag++); row++;
384189c6957cSBarry Smith         break;
384289c6957cSBarry Smith       case 2:
384389c6957cSBarry Smith         v2   = a->a + ii[row+1];
384489c6957cSBarry Smith         sum1 = t[row];
384589c6957cSBarry Smith         sum2 = t[row+1];
384689c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
384789c6957cSBarry Smith           i1    = idx[0];
384889c6957cSBarry Smith           i2    = idx[1];
384989c6957cSBarry Smith           idx  += 2;
385089c6957cSBarry Smith           tmp0  = t[i1];
385189c6957cSBarry Smith           tmp1  = t[i2];
385289c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
385389c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
385489c6957cSBarry Smith         }
385589c6957cSBarry Smith 
385689c6957cSBarry Smith         if (n == sz-1) {
385789c6957cSBarry Smith           tmp0  = t[*idx];
385889c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
385989c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
386089c6957cSBarry Smith         }
386189c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[2];
386289c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[3];
386389c6957cSBarry Smith         ibdiag   += 4; row += 2;
386489c6957cSBarry Smith         break;
386589c6957cSBarry Smith       case 3:
386689c6957cSBarry Smith         v2   = a->a + ii[row+1];
386789c6957cSBarry Smith         v3   = a->a + ii[row+2];
386889c6957cSBarry Smith         sum1 = t[row];
386989c6957cSBarry Smith         sum2 = t[row+1];
387089c6957cSBarry Smith         sum3 = t[row+2];
387189c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
387289c6957cSBarry Smith           i1    = idx[0];
387389c6957cSBarry Smith           i2    = idx[1];
387489c6957cSBarry Smith           idx  += 2;
387589c6957cSBarry Smith           tmp0  = t[i1];
387689c6957cSBarry Smith           tmp1  = t[i2];
387789c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
387889c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
387989c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
388089c6957cSBarry Smith         }
388189c6957cSBarry Smith 
388289c6957cSBarry Smith         if (n == sz-1) {
388389c6957cSBarry Smith           tmp0  = t[*idx];
388489c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
388589c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
388689c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
388789c6957cSBarry Smith         }
388889c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
388989c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
389089c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
389189c6957cSBarry Smith         ibdiag   += 9; row += 3;
389289c6957cSBarry Smith         break;
389389c6957cSBarry Smith       case 4:
389489c6957cSBarry Smith         v2   = a->a + ii[row+1];
389589c6957cSBarry Smith         v3   = a->a + ii[row+2];
389689c6957cSBarry Smith         v4   = a->a + ii[row+3];
389789c6957cSBarry Smith         sum1 = t[row];
389889c6957cSBarry Smith         sum2 = t[row+1];
389989c6957cSBarry Smith         sum3 = t[row+2];
390089c6957cSBarry Smith         sum4 = t[row+3];
390189c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
390289c6957cSBarry Smith           i1    = idx[0];
390389c6957cSBarry Smith           i2    = idx[1];
390489c6957cSBarry Smith           idx  += 2;
390589c6957cSBarry Smith           tmp0  = t[i1];
390689c6957cSBarry Smith           tmp1  = t[i2];
390789c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
390889c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
390989c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
391089c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
391189c6957cSBarry Smith         }
391289c6957cSBarry Smith 
391389c6957cSBarry Smith         if (n == sz-1) {
391489c6957cSBarry Smith           tmp0  = t[*idx];
391589c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
391689c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
391789c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
391889c6957cSBarry Smith           sum4 -= v4[0] * tmp0;
391989c6957cSBarry Smith         }
392089c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
392189c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
392289c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
392389c6957cSBarry Smith         x[row+3] += t[row+3] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
392489c6957cSBarry Smith         ibdiag   += 16; row += 4;
392589c6957cSBarry Smith         break;
392689c6957cSBarry Smith       case 5:
392789c6957cSBarry Smith         v2   = a->a + ii[row+1];
392889c6957cSBarry Smith         v3   = a->a + ii[row+2];
392989c6957cSBarry Smith         v4   = a->a + ii[row+3];
393089c6957cSBarry Smith         v5   = a->a + ii[row+4];
393189c6957cSBarry Smith         sum1 = t[row];
393289c6957cSBarry Smith         sum2 = t[row+1];
393389c6957cSBarry Smith         sum3 = t[row+2];
393489c6957cSBarry Smith         sum4 = t[row+3];
393589c6957cSBarry Smith         sum5 = t[row+4];
393689c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
393789c6957cSBarry Smith           i1    = idx[0];
393889c6957cSBarry Smith           i2    = idx[1];
393989c6957cSBarry Smith           idx  += 2;
394089c6957cSBarry Smith           tmp0  = t[i1];
394189c6957cSBarry Smith           tmp1  = t[i2];
394289c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
394389c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
394489c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
394589c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
394689c6957cSBarry Smith           sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
394789c6957cSBarry Smith         }
394889c6957cSBarry Smith 
394989c6957cSBarry Smith         if (n == sz-1) {
395089c6957cSBarry Smith           tmp0  = t[*idx];
395189c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
395289c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
395389c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
395489c6957cSBarry Smith           sum4 -= v4[0] * tmp0;
395589c6957cSBarry Smith           sum5 -= v5[0] * tmp0;
395689c6957cSBarry Smith         }
395789c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
395889c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
395989c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
396089c6957cSBarry Smith         x[row+3] += t[row+3] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
396189c6957cSBarry Smith         x[row+4] += t[row+4] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
396289c6957cSBarry Smith         ibdiag   += 25; row += 5;
396389c6957cSBarry Smith         break;
396489c6957cSBarry Smith       default:
3965e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
396689c6957cSBarry Smith       }
396789c6957cSBarry Smith     }
396889c6957cSBarry Smith     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
39695850ef23SBarry Smith   }
39702af78befSBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
39713649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3972365a8a9eSBarry Smith   PetscFunctionReturn(0);
39732af78befSBarry Smith }
39742af78befSBarry Smith 
39754108e4d5SBarry Smith PetscErrorCode MatMultDiagonalBlock_SeqAIJ_Inode(Mat A,Vec bb,Vec xx)
397689c6957cSBarry Smith {
397789c6957cSBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
397889c6957cSBarry Smith   PetscScalar       *x,tmp1,tmp2,tmp3,tmp4,tmp5,x1,x2,x3,x4,x5;
397989c6957cSBarry Smith   const MatScalar   *bdiag = a->inode.bdiag;
398089c6957cSBarry Smith   const PetscScalar *b;
398189c6957cSBarry Smith   PetscErrorCode    ierr;
398289c6957cSBarry Smith   PetscInt          m      = a->inode.node_count,cnt = 0,i,row;
398389c6957cSBarry Smith   const PetscInt    *sizes = a->inode.size;
39842af78befSBarry Smith 
398589c6957cSBarry Smith   PetscFunctionBegin;
398689c6957cSBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
39873649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
398889c6957cSBarry Smith   cnt  = 0;
398989c6957cSBarry Smith   for (i=0, row=0; i<m; i++) {
399089c6957cSBarry Smith     switch (sizes[i]) {
399189c6957cSBarry Smith     case 1:
399289c6957cSBarry Smith       x[row] = b[row]*bdiag[cnt++];row++;
399389c6957cSBarry Smith       break;
399489c6957cSBarry Smith     case 2:
399589c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1];
399689c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+2];
399789c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+3];
399889c6957cSBarry Smith       x[row++] = tmp1;
399989c6957cSBarry Smith       x[row++] = tmp2;
400089c6957cSBarry Smith       cnt     += 4;
400189c6957cSBarry Smith       break;
400289c6957cSBarry Smith     case 3:
400389c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2];
400489c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+3] + x3*bdiag[cnt+6];
400589c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+4] + x3*bdiag[cnt+7];
400689c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+5] + x3*bdiag[cnt+8];
400789c6957cSBarry Smith       x[row++] = tmp1;
400889c6957cSBarry Smith       x[row++] = tmp2;
400989c6957cSBarry Smith       x[row++] = tmp3;
401089c6957cSBarry Smith       cnt     += 9;
401189c6957cSBarry Smith       break;
401289c6957cSBarry Smith     case 4:
401389c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2]; x4 = b[row+3];
401489c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+4] + x3*bdiag[cnt+8] + x4*bdiag[cnt+12];
401589c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+5] + x3*bdiag[cnt+9] + x4*bdiag[cnt+13];
401689c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+6] + x3*bdiag[cnt+10] + x4*bdiag[cnt+14];
401789c6957cSBarry Smith       tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+7] + x3*bdiag[cnt+11] + x4*bdiag[cnt+15];
401889c6957cSBarry Smith       x[row++] = tmp1;
401989c6957cSBarry Smith       x[row++] = tmp2;
402089c6957cSBarry Smith       x[row++] = tmp3;
402189c6957cSBarry Smith       x[row++] = tmp4;
402289c6957cSBarry Smith       cnt     += 16;
402389c6957cSBarry Smith       break;
402489c6957cSBarry Smith     case 5:
402589c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2]; x4 = b[row+3]; x5 = b[row+4];
402689c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+5] + x3*bdiag[cnt+10] + x4*bdiag[cnt+15] + x5*bdiag[cnt+20];
402789c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+6] + x3*bdiag[cnt+11] + x4*bdiag[cnt+16] + x5*bdiag[cnt+21];
402889c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+7] + x3*bdiag[cnt+12] + x4*bdiag[cnt+17] + x5*bdiag[cnt+22];
402989c6957cSBarry Smith       tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+8] + x3*bdiag[cnt+13] + x4*bdiag[cnt+18] + x5*bdiag[cnt+23];
403089c6957cSBarry Smith       tmp5     = x1*bdiag[cnt+4] + x2*bdiag[cnt+9] + x3*bdiag[cnt+14] + x4*bdiag[cnt+19] + x5*bdiag[cnt+24];
403189c6957cSBarry Smith       x[row++] = tmp1;
403289c6957cSBarry Smith       x[row++] = tmp2;
403389c6957cSBarry Smith       x[row++] = tmp3;
403489c6957cSBarry Smith       x[row++] = tmp4;
403589c6957cSBarry Smith       x[row++] = tmp5;
403689c6957cSBarry Smith       cnt     += 25;
403789c6957cSBarry Smith       break;
403889c6957cSBarry Smith     default:
4039e32f2f54SBarry Smith       SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
404089c6957cSBarry Smith     }
404189c6957cSBarry Smith   }
404289c6957cSBarry Smith   ierr = PetscLogFlops(2*cnt);CHKERRQ(ierr);
404389c6957cSBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
40443649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
404589c6957cSBarry Smith   PetscFunctionReturn(0);
404689c6957cSBarry Smith }
404789c6957cSBarry Smith 
40484c1414c8SBarry Smith /*
40494c1414c8SBarry Smith     samestructure indicates that the matrix has not changed its nonzero structure so we
40504c1414c8SBarry Smith     do not need to recompute the inodes
40514c1414c8SBarry Smith */
4052a02bda8eSBarry Smith PetscErrorCode MatSeqAIJCheckInode(Mat A)
40534c1414c8SBarry Smith {
40544c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
40554c1414c8SBarry Smith   PetscErrorCode ierr;
40568758e1faSBarry Smith   PetscInt       i,j,m,nzx,nzy,*ns,node_count,blk_size;
4057ace3abfcSBarry Smith   PetscBool      flag;
40588758e1faSBarry Smith   const PetscInt *idx,*idy,*ii;
40594c1414c8SBarry Smith 
40604c1414c8SBarry Smith   PetscFunctionBegin;
4061d74fe821SBarry Smith   if (!a->inode.use) PetscFunctionReturn(0);
4062a02bda8eSBarry Smith   if (a->inode.checked && A->nonzerostate == a->inode.mat_nonzerostate) PetscFunctionReturn(0);
40634c1414c8SBarry Smith 
4064d0f46423SBarry Smith   m = A->rmap->n;
40652205254eSKarl Rupp   if (a->inode.size) ns = a->inode.size;
40662205254eSKarl Rupp   else {
4067854ce69bSBarry Smith     ierr = PetscMalloc1(m+1,&ns);CHKERRQ(ierr);
40682205254eSKarl Rupp   }
40694c1414c8SBarry Smith 
40704c1414c8SBarry Smith   i          = 0;
40714c1414c8SBarry Smith   node_count = 0;
40724c1414c8SBarry Smith   idx        = a->j;
40734c1414c8SBarry Smith   ii         = a->i;
40744c1414c8SBarry Smith   while (i < m) {                /* For each row */
40754c1414c8SBarry Smith     nzx = ii[i+1] - ii[i];       /* Number of nonzeros */
40764c1414c8SBarry Smith     /* Limits the number of elements in a node to 'a->inode.limit' */
40774c1414c8SBarry Smith     for (j=i+1,idy=idx,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
40784c1414c8SBarry Smith       nzy = ii[j+1] - ii[j];     /* Same number of nonzeros */
40794c1414c8SBarry Smith       if (nzy != nzx) break;
40804c1414c8SBarry Smith       idy += nzx;              /* Same nonzero pattern */
40814c1414c8SBarry Smith       ierr = PetscMemcmp(idx,idy,nzx*sizeof(PetscInt),&flag);CHKERRQ(ierr);
40824c1414c8SBarry Smith       if (!flag) break;
40834c1414c8SBarry Smith     }
40844c1414c8SBarry Smith     ns[node_count++] = blk_size;
40854c1414c8SBarry Smith     idx             += blk_size*nzx;
40864c1414c8SBarry Smith     i                = j;
40874c1414c8SBarry Smith   }
40884c1414c8SBarry Smith   /* If not enough inodes found,, do not use inode version of the routines */
4089be6adb11SBarry Smith   if (!m || node_count > .8*m) {
40904c1414c8SBarry Smith     ierr = PetscFree(ns);CHKERRQ(ierr);
40912205254eSKarl Rupp 
40924c1414c8SBarry Smith     a->inode.node_count       = 0;
40930298fd71SBarry Smith     a->inode.size             = NULL;
40944c1414c8SBarry Smith     a->inode.use              = PETSC_FALSE;
4095ded6e084SBarry Smith     A->ops->mult              = MatMult_SeqAIJ;
4096ded6e084SBarry Smith     A->ops->sor               = MatSOR_SeqAIJ;
4097ded6e084SBarry Smith     A->ops->multadd           = MatMultAdd_SeqAIJ;
4098ded6e084SBarry Smith     A->ops->getrowij          = MatGetRowIJ_SeqAIJ;
4099ded6e084SBarry Smith     A->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ;
4100ded6e084SBarry Smith     A->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ;
4101ded6e084SBarry Smith     A->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ;
4102ded6e084SBarry Smith     A->ops->coloringpatch     = 0;
4103ded6e084SBarry Smith     A->ops->multdiagonalblock = 0;
41042205254eSKarl Rupp 
41054c1414c8SBarry Smith     ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr);
41064c1414c8SBarry Smith   } else {
4107d5f3da31SBarry Smith     if (!A->factortype) {
41084108e4d5SBarry Smith       A->ops->mult              = MatMult_SeqAIJ_Inode;
41094108e4d5SBarry Smith       A->ops->sor               = MatSOR_SeqAIJ_Inode;
41104108e4d5SBarry Smith       A->ops->multadd           = MatMultAdd_SeqAIJ_Inode;
4111375a6242SBarry Smith       A->ops->multdiagonalblock = MatMultDiagonalBlock_SeqAIJ_Inode;
4112375a6242SBarry Smith       if (A->rmap->n == A->cmap->n) {
41134108e4d5SBarry Smith         A->ops->getrowij          = MatGetRowIJ_SeqAIJ_Inode;
41144108e4d5SBarry Smith         A->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ_Inode;
41154108e4d5SBarry Smith         A->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ_Inode;
41164108e4d5SBarry Smith         A->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ_Inode;
41174108e4d5SBarry Smith         A->ops->coloringpatch     = MatColoringPatch_SeqAIJ_Inode;
4118375a6242SBarry Smith       }
4119d3ac4fa3SBarry Smith     } else {
4120d3ac4fa3SBarry Smith       A->ops->solve = MatSolve_SeqAIJ_Inode_inplace;
4121d3ac4fa3SBarry Smith     }
41224c1414c8SBarry Smith     a->inode.node_count = node_count;
41234c1414c8SBarry Smith     a->inode.size       = ns;
41244c1414c8SBarry Smith     ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr);
41254c1414c8SBarry Smith   }
4126be6adb11SBarry Smith   a->inode.checked          = PETSC_TRUE;
4127a02bda8eSBarry Smith   a->inode.mat_nonzerostate = A->nonzerostate;
41284c1414c8SBarry Smith   PetscFunctionReturn(0);
41294c1414c8SBarry Smith }
41304c1414c8SBarry Smith 
4131150f0143SBarry Smith PetscErrorCode MatDuplicate_SeqAIJ_Inode(Mat A,MatDuplicateOption cpvalues,Mat *C)
4132150f0143SBarry Smith {
4133150f0143SBarry Smith   Mat            B =*C;
4134150f0143SBarry Smith   Mat_SeqAIJ     *c=(Mat_SeqAIJ*)B->data,*a=(Mat_SeqAIJ*)A->data;
4135150f0143SBarry Smith   PetscErrorCode ierr;
4136150f0143SBarry Smith   PetscInt       m=A->rmap->n;
4137150f0143SBarry Smith 
4138150f0143SBarry Smith   PetscFunctionBegin;
4139150f0143SBarry Smith   c->inode.use       = a->inode.use;
4140150f0143SBarry Smith   c->inode.limit     = a->inode.limit;
4141150f0143SBarry Smith   c->inode.max_limit = a->inode.max_limit;
4142150f0143SBarry Smith   if (a->inode.size) {
4143854ce69bSBarry Smith     ierr                = PetscMalloc1(m+1,&c->inode.size);CHKERRQ(ierr);
4144150f0143SBarry Smith     c->inode.node_count = a->inode.node_count;
4145150f0143SBarry Smith     ierr                = PetscMemcpy(c->inode.size,a->inode.size,(m+1)*sizeof(PetscInt));CHKERRQ(ierr);
4146a02bda8eSBarry Smith     /* note the table of functions below should match that in MatSeqAIJCheckInode() */
41472c451681SBarry Smith     if (!B->factortype) {
41482c451681SBarry Smith       B->ops->mult              = MatMult_SeqAIJ_Inode;
41492c451681SBarry Smith       B->ops->sor               = MatSOR_SeqAIJ_Inode;
41502c451681SBarry Smith       B->ops->multadd           = MatMultAdd_SeqAIJ_Inode;
41512c451681SBarry Smith       B->ops->getrowij          = MatGetRowIJ_SeqAIJ_Inode;
41522c451681SBarry Smith       B->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ_Inode;
41532c451681SBarry Smith       B->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ_Inode;
41542c451681SBarry Smith       B->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ_Inode;
41552c451681SBarry Smith       B->ops->coloringpatch     = MatColoringPatch_SeqAIJ_Inode;
41562c451681SBarry Smith       B->ops->multdiagonalblock = MatMultDiagonalBlock_SeqAIJ_Inode;
4157150f0143SBarry Smith     } else {
41582c451681SBarry Smith       B->ops->solve = MatSolve_SeqAIJ_Inode_inplace;
4159150f0143SBarry Smith     }
4160150f0143SBarry Smith   } else {
4161150f0143SBarry Smith     c->inode.size       = 0;
4162150f0143SBarry Smith     c->inode.node_count = 0;
4163150f0143SBarry Smith   }
4164150f0143SBarry Smith   c->inode.ibdiagvalid = PETSC_FALSE;
4165150f0143SBarry Smith   c->inode.ibdiag      = 0;
4166150f0143SBarry Smith   c->inode.bdiag       = 0;
4167150f0143SBarry Smith   PetscFunctionReturn(0);
4168150f0143SBarry Smith }
4169150f0143SBarry Smith 
41708758e1faSBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatGetRow_FactoredLU(PetscInt *cols,PetscInt nzl,PetscInt nzu,PetscInt nz,const PetscInt *ai,const PetscInt *aj,const PetscInt *adiag,PetscInt row)
417117454e89SShri Abhyankar {
41728758e1faSBarry Smith   PetscInt       k;
41738758e1faSBarry Smith   const PetscInt *vi;
41746e111a19SKarl Rupp 
417517454e89SShri Abhyankar   PetscFunctionBegin;
417617454e89SShri Abhyankar   vi = aj + ai[row];
417717454e89SShri Abhyankar   for (k=0; k<nzl; k++) cols[k] = vi[k];
417817454e89SShri Abhyankar   vi        = aj + adiag[row];
417917454e89SShri Abhyankar   cols[nzl] = vi[0];
418017454e89SShri Abhyankar   vi        = aj + adiag[row+1]+1;
418117454e89SShri Abhyankar   for (k=0; k<nzu; k++) cols[nzl+1+k] = vi[k];
418217454e89SShri Abhyankar   PetscFunctionReturn(0);
418317454e89SShri Abhyankar }
41846936b636SHong Zhang /*
4185a02bda8eSBarry Smith    MatSeqAIJCheckInode_FactorLU - Check Inode for factored seqaij matrix.
4186a02bda8eSBarry Smith    Modified from MatSeqAIJCheckInode().
41876936b636SHong Zhang 
41886936b636SHong Zhang    Input Parameters:
4189abb87a52SBarry Smith .  Mat A - ILU or LU matrix factor
4190abb87a52SBarry Smith 
41916936b636SHong Zhang */
4192a02bda8eSBarry Smith PetscErrorCode MatSeqAIJCheckInode_FactorLU(Mat A)
4193019b515eSShri Abhyankar {
4194019b515eSShri Abhyankar   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
4195019b515eSShri Abhyankar   PetscErrorCode ierr;
4196019b515eSShri Abhyankar   PetscInt       i,j,m,nzl1,nzu1,nzl2,nzu2,nzx,nzy,node_count,blk_size;
41978758e1faSBarry Smith   PetscInt       *cols1,*cols2,*ns;
41988758e1faSBarry Smith   const PetscInt *ai = a->i,*aj = a->j, *adiag = a->diag;
4199ace3abfcSBarry Smith   PetscBool      flag;
4200019b515eSShri Abhyankar 
4201019b515eSShri Abhyankar   PetscFunctionBegin;
4202019b515eSShri Abhyankar   if (!a->inode.use)    PetscFunctionReturn(0);
4203abb87a52SBarry Smith   if (a->inode.checked) PetscFunctionReturn(0);
4204019b515eSShri Abhyankar 
4205019b515eSShri Abhyankar   m = A->rmap->n;
42062205254eSKarl Rupp   if (a->inode.size) ns = a->inode.size;
42072205254eSKarl Rupp   else {
4208854ce69bSBarry Smith     ierr = PetscMalloc1(m+1,&ns);CHKERRQ(ierr);
42092205254eSKarl Rupp   }
4210019b515eSShri Abhyankar 
4211019b515eSShri Abhyankar   i          = 0;
4212019b515eSShri Abhyankar   node_count = 0;
4213dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&cols1,m,&cols2);CHKERRQ(ierr);
4214019b515eSShri Abhyankar   while (i < m) {                /* For each row */
4215019b515eSShri Abhyankar     nzl1 = ai[i+1] - ai[i];       /* Number of nonzeros in L */
4216019b515eSShri Abhyankar     nzu1 = adiag[i] - adiag[i+1] - 1; /* Number of nonzeros in U excluding diagonal*/
4217019b515eSShri Abhyankar     nzx  = nzl1 + nzu1 + 1;
4218019b515eSShri Abhyankar     MatGetRow_FactoredLU(cols1,nzl1,nzu1,nzx,ai,aj,adiag,i);
4219019b515eSShri Abhyankar 
4220019b515eSShri Abhyankar     /* Limits the number of elements in a node to 'a->inode.limit' */
4221019b515eSShri Abhyankar     for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
4222019b515eSShri Abhyankar       nzl2 = ai[j+1] - ai[j];
4223019b515eSShri Abhyankar       nzu2 = adiag[j] - adiag[j+1] - 1;
4224019b515eSShri Abhyankar       nzy  = nzl2 + nzu2 + 1;
4225019b515eSShri Abhyankar       if (nzy != nzx) break;
422617454e89SShri Abhyankar       ierr = MatGetRow_FactoredLU(cols2,nzl2,nzu2,nzy,ai,aj,adiag,j);CHKERRQ(ierr);
4227019b515eSShri Abhyankar       ierr = PetscMemcmp(cols1,cols2,nzx*sizeof(PetscInt),&flag);CHKERRQ(ierr);
42288758e1faSBarry Smith       if (!flag) break;
4229019b515eSShri Abhyankar     }
4230019b515eSShri Abhyankar     ns[node_count++] = blk_size;
4231019b515eSShri Abhyankar     i                = j;
4232019b515eSShri Abhyankar   }
42338758e1faSBarry Smith   ierr             = PetscFree2(cols1,cols2);CHKERRQ(ierr);
4234019b515eSShri Abhyankar   /* If not enough inodes found,, do not use inode version of the routines */
4235be6adb11SBarry Smith   if (!m || node_count > .8*m) {
4236019b515eSShri Abhyankar     ierr = PetscFree(ns);CHKERRQ(ierr);
42372205254eSKarl Rupp 
4238019b515eSShri Abhyankar     a->inode.node_count = 0;
42390298fd71SBarry Smith     a->inode.size       = NULL;
4240019b515eSShri Abhyankar     a->inode.use        = PETSC_FALSE;
42412205254eSKarl Rupp 
4242019b515eSShri Abhyankar     ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr);
4243019b515eSShri Abhyankar   } else {
4244019b515eSShri Abhyankar     A->ops->mult              = 0;
4245019b515eSShri Abhyankar     A->ops->sor               = 0;
4246019b515eSShri Abhyankar     A->ops->multadd           = 0;
4247019b515eSShri Abhyankar     A->ops->getrowij          = 0;
4248019b515eSShri Abhyankar     A->ops->restorerowij      = 0;
4249019b515eSShri Abhyankar     A->ops->getcolumnij       = 0;
4250019b515eSShri Abhyankar     A->ops->restorecolumnij   = 0;
4251019b515eSShri Abhyankar     A->ops->coloringpatch     = 0;
4252019b515eSShri Abhyankar     A->ops->multdiagonalblock = 0;
4253019b515eSShri Abhyankar     a->inode.node_count       = node_count;
4254019b515eSShri Abhyankar     a->inode.size             = ns;
42552205254eSKarl Rupp 
4256019b515eSShri Abhyankar     ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr);
4257019b515eSShri Abhyankar   }
4258be6adb11SBarry Smith   a->inode.checked = PETSC_TRUE;
4259019b515eSShri Abhyankar   PetscFunctionReturn(0);
4260019b515eSShri Abhyankar }
4261019b515eSShri Abhyankar 
4262acf2f550SJed Brown PetscErrorCode MatSeqAIJInvalidateDiagonal_Inode(Mat A)
4263acf2f550SJed Brown {
4264acf2f550SJed Brown   Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data;
4265acf2f550SJed Brown 
4266acf2f550SJed Brown   PetscFunctionBegin;
4267acf2f550SJed Brown   a->inode.ibdiagvalid = PETSC_FALSE;
4268acf2f550SJed Brown   PetscFunctionReturn(0);
4269acf2f550SJed Brown }
4270acf2f550SJed Brown 
42714c1414c8SBarry Smith /*
42724c1414c8SBarry Smith      This is really ugly. if inodes are used this replaces the
42734c1414c8SBarry Smith   permutations with ones that correspond to rows/cols of the matrix
42744c1414c8SBarry Smith   rather then inode blocks
42754c1414c8SBarry Smith */
42767087cfbeSBarry Smith PetscErrorCode  MatInodeAdjustForInodes(Mat A,IS *rperm,IS *cperm)
42774c1414c8SBarry Smith {
42784ac538c5SBarry Smith   PetscErrorCode ierr;
42794c1414c8SBarry Smith 
42804c1414c8SBarry Smith   PetscFunctionBegin;
42814ac538c5SBarry Smith   ierr = PetscTryMethod(A,"MatInodeAdjustForInodes_C",(Mat,IS*,IS*),(A,rperm,cperm));CHKERRQ(ierr);
42824c1414c8SBarry Smith   PetscFunctionReturn(0);
42834c1414c8SBarry Smith }
42844c1414c8SBarry Smith 
42857087cfbeSBarry Smith PetscErrorCode  MatInodeAdjustForInodes_SeqAIJ_Inode(Mat A,IS *rperm,IS *cperm)
42864c1414c8SBarry Smith {
42874c1414c8SBarry Smith   Mat_SeqAIJ     *a=(Mat_SeqAIJ*)A->data;
42884c1414c8SBarry Smith   PetscErrorCode ierr;
42895d0c19d7SBarry Smith   PetscInt       m = A->rmap->n,n = A->cmap->n,i,j,nslim_row = a->inode.node_count;
42905d0c19d7SBarry Smith   const PetscInt *ridx,*cidx;
42914c1414c8SBarry Smith   PetscInt       row,col,*permr,*permc,*ns_row =  a->inode.size,*tns,start_val,end_val,indx;
42924c1414c8SBarry Smith   PetscInt       nslim_col,*ns_col;
42934c1414c8SBarry Smith   IS             ris = *rperm,cis = *cperm;
42944c1414c8SBarry Smith 
42954c1414c8SBarry Smith   PetscFunctionBegin;
42964c1414c8SBarry Smith   if (!a->inode.size) PetscFunctionReturn(0); /* no inodes so return */
42974c1414c8SBarry Smith   if (a->inode.node_count == m) PetscFunctionReturn(0); /* all inodes are of size 1 */
42984c1414c8SBarry Smith 
4299470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,&nslim_col,&ns_col);CHKERRQ(ierr);
4300854ce69bSBarry Smith   ierr = PetscMalloc1(((nslim_row>nslim_col) ? nslim_row : nslim_col)+1,&tns);CHKERRQ(ierr);
4301dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&permr,n,&permc);CHKERRQ(ierr);
43024c1414c8SBarry Smith 
43034c1414c8SBarry Smith   ierr = ISGetIndices(ris,&ridx);CHKERRQ(ierr);
43044c1414c8SBarry Smith   ierr = ISGetIndices(cis,&cidx);CHKERRQ(ierr);
43054c1414c8SBarry Smith 
43064c1414c8SBarry Smith   /* Form the inode structure for the rows of permuted matric using inv perm*/
43074c1414c8SBarry Smith   for (i=0,tns[0]=0; i<nslim_row; ++i) tns[i+1] = tns[i] + ns_row[i];
43084c1414c8SBarry Smith 
43094c1414c8SBarry Smith   /* Construct the permutations for rows*/
43104c1414c8SBarry Smith   for (i=0,row = 0; i<nslim_row; ++i) {
43114c1414c8SBarry Smith     indx      = ridx[i];
43124c1414c8SBarry Smith     start_val = tns[indx];
43134c1414c8SBarry Smith     end_val   = tns[indx + 1];
43144c1414c8SBarry Smith     for (j=start_val; j<end_val; ++j,++row) permr[row]= j;
43154c1414c8SBarry Smith   }
43164c1414c8SBarry Smith 
43174c1414c8SBarry Smith   /* Form the inode structure for the columns of permuted matrix using inv perm*/
43184c1414c8SBarry Smith   for (i=0,tns[0]=0; i<nslim_col; ++i) tns[i+1] = tns[i] + ns_col[i];
43194c1414c8SBarry Smith 
43204c1414c8SBarry Smith   /* Construct permutations for columns */
43214c1414c8SBarry Smith   for (i=0,col=0; i<nslim_col; ++i) {
43224c1414c8SBarry Smith     indx      = cidx[i];
43234c1414c8SBarry Smith     start_val = tns[indx];
43244c1414c8SBarry Smith     end_val   = tns[indx + 1];
43254c1414c8SBarry Smith     for (j = start_val; j<end_val; ++j,++col) permc[col]= j;
43264c1414c8SBarry Smith   }
43274c1414c8SBarry Smith 
432870b3c8c7SBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,n,permr,PETSC_COPY_VALUES,rperm);CHKERRQ(ierr);
43290e83c824SBarry Smith   ierr = ISSetPermutation(*rperm);CHKERRQ(ierr);
433070b3c8c7SBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,n,permc,PETSC_COPY_VALUES,cperm);CHKERRQ(ierr);
43310e83c824SBarry Smith   ierr = ISSetPermutation(*cperm);CHKERRQ(ierr);
43324c1414c8SBarry Smith 
43334c1414c8SBarry Smith   ierr = ISRestoreIndices(ris,&ridx);CHKERRQ(ierr);
43344c1414c8SBarry Smith   ierr = ISRestoreIndices(cis,&cidx);CHKERRQ(ierr);
43354c1414c8SBarry Smith 
43364c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
43370e83c824SBarry Smith   ierr = PetscFree2(permr,permc);CHKERRQ(ierr);
43386bf464f9SBarry Smith   ierr = ISDestroy(&cis);CHKERRQ(ierr);
43396bf464f9SBarry Smith   ierr = ISDestroy(&ris);CHKERRQ(ierr);
43404c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
43414c1414c8SBarry Smith   PetscFunctionReturn(0);
43424c1414c8SBarry Smith }
43434c1414c8SBarry Smith 
43444c1414c8SBarry Smith /*@C
43454c1414c8SBarry Smith    MatInodeGetInodeSizes - Returns the inode information of the Inode matrix.
43464c1414c8SBarry Smith 
43473f9fe445SBarry Smith    Not Collective
43484c1414c8SBarry Smith 
43494c1414c8SBarry Smith    Input Parameter:
43504c1414c8SBarry Smith .  A - the Inode matrix or matrix derived from the Inode class -- e.g., SeqAIJ
43514c1414c8SBarry Smith 
43524c1414c8SBarry Smith    Output Parameter:
43534c1414c8SBarry Smith +  node_count - no of inodes present in the matrix.
43544c1414c8SBarry Smith .  sizes      - an array of size node_count,with sizes of each inode.
43554c1414c8SBarry Smith -  limit      - the max size used to generate the inodes.
43564c1414c8SBarry Smith 
43574c1414c8SBarry Smith    Level: advanced
43584c1414c8SBarry Smith 
4359*95452b02SPatrick Sanan    Notes:
4360*95452b02SPatrick Sanan     This routine returns some internal storage information
43614c1414c8SBarry Smith    of the matrix, it is intended to be used by advanced users.
43624c1414c8SBarry Smith    It should be called after the matrix is assembled.
43634c1414c8SBarry Smith    The contents of the sizes[] array should not be changed.
43640298fd71SBarry Smith    NULL may be passed for information not requested.
43654c1414c8SBarry Smith 
43664c1414c8SBarry Smith .keywords: matrix, seqaij, get, inode
43674c1414c8SBarry Smith 
43684c1414c8SBarry Smith .seealso: MatGetInfo()
43694c1414c8SBarry Smith @*/
43707087cfbeSBarry Smith PetscErrorCode  MatInodeGetInodeSizes(Mat A,PetscInt *node_count,PetscInt *sizes[],PetscInt *limit)
43714c1414c8SBarry Smith {
43724c1414c8SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt*,PetscInt*[],PetscInt*);
43734c1414c8SBarry Smith 
43744c1414c8SBarry Smith   PetscFunctionBegin;
4375e32f2f54SBarry Smith   if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
43760005d66cSJed Brown   ierr = PetscObjectQueryFunction((PetscObject)A,"MatInodeGetInodeSizes_C",&f);CHKERRQ(ierr);
43774c1414c8SBarry Smith   if (f) {
43784c1414c8SBarry Smith     ierr = (*f)(A,node_count,sizes,limit);CHKERRQ(ierr);
43794c1414c8SBarry Smith   }
43804c1414c8SBarry Smith   PetscFunctionReturn(0);
43814c1414c8SBarry Smith }
43824c1414c8SBarry Smith 
43837087cfbeSBarry Smith PetscErrorCode  MatInodeGetInodeSizes_SeqAIJ_Inode(Mat A,PetscInt *node_count,PetscInt *sizes[],PetscInt *limit)
43844c1414c8SBarry Smith {
43854c1414c8SBarry Smith   Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data;
43864c1414c8SBarry Smith 
43874c1414c8SBarry Smith   PetscFunctionBegin;
43884c1414c8SBarry Smith   if (node_count) *node_count = a->inode.node_count;
43894c1414c8SBarry Smith   if (sizes)      *sizes      = a->inode.size;
43904c1414c8SBarry Smith   if (limit)      *limit      = a->inode.limit;
43914c1414c8SBarry Smith   PetscFunctionReturn(0);
43924c1414c8SBarry Smith }
4393