xref: /petsc/src/mat/impls/aij/seq/inode.c (revision 98921bda46e76d7aaed9e0138c5ff9d0ce93f355)
14c1414c8SBarry Smith 
24c1414c8SBarry Smith /*
34c1414c8SBarry Smith   This file provides high performance routines for the Inode format (compressed sparse row)
44c1414c8SBarry Smith   by taking advantage of rows with identical nonzero structure (I-nodes).
54c1414c8SBarry Smith */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h>
74c1414c8SBarry Smith 
8470880abSPatrick Sanan static PetscErrorCode MatCreateColInode_Private(Mat A,PetscInt *size,PetscInt **ns)
94c1414c8SBarry Smith {
104c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
114c1414c8SBarry Smith   PetscErrorCode ierr;
124c1414c8SBarry Smith   PetscInt       i,count,m,n,min_mn,*ns_row,*ns_col;
134c1414c8SBarry Smith 
144c1414c8SBarry Smith   PetscFunctionBegin;
15d0f46423SBarry Smith   n = A->cmap->n;
16d0f46423SBarry Smith   m = A->rmap->n;
17b215bc84SStefano Zampini   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
184c1414c8SBarry Smith   ns_row = a->inode.size;
194c1414c8SBarry Smith 
204c1414c8SBarry Smith   min_mn = (m < n) ? m : n;
214c1414c8SBarry Smith   if (!ns) {
224c1414c8SBarry Smith     for (count=0,i=0; count<min_mn; count+=ns_row[i],i++) ;
234c1414c8SBarry Smith     for (; count+1 < n; count++,i++) ;
244c1414c8SBarry Smith     if (count < n)  {
254c1414c8SBarry Smith       i++;
264c1414c8SBarry Smith     }
274c1414c8SBarry Smith     *size = i;
284c1414c8SBarry Smith     PetscFunctionReturn(0);
294c1414c8SBarry Smith   }
30854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&ns_col);CHKERRQ(ierr);
314c1414c8SBarry Smith 
324c1414c8SBarry Smith   /* Use the same row structure wherever feasible. */
334c1414c8SBarry Smith   for (count=0,i=0; count<min_mn; count+=ns_row[i],i++) {
344c1414c8SBarry Smith     ns_col[i] = ns_row[i];
354c1414c8SBarry Smith   }
364c1414c8SBarry Smith 
374c1414c8SBarry Smith   /* if m < n; pad up the remainder with inode_limit */
384c1414c8SBarry Smith   for (; count+1 < n; count++,i++) {
394c1414c8SBarry Smith     ns_col[i] = 1;
404c1414c8SBarry Smith   }
414c1414c8SBarry Smith   /* The last node is the odd ball. padd it up with the remaining rows; */
424c1414c8SBarry Smith   if (count < n) {
434c1414c8SBarry Smith     ns_col[i] = n - count;
444c1414c8SBarry Smith     i++;
454c1414c8SBarry Smith   } else if (count > n) {
464c1414c8SBarry Smith     /* Adjust for the over estimation */
474c1414c8SBarry Smith     ns_col[i-1] += n - count;
484c1414c8SBarry Smith   }
494c1414c8SBarry Smith   *size = i;
504c1414c8SBarry Smith   *ns   = ns_col;
514c1414c8SBarry Smith   PetscFunctionReturn(0);
524c1414c8SBarry Smith }
534c1414c8SBarry Smith 
544c1414c8SBarry Smith /*
554c1414c8SBarry Smith       This builds symmetric version of nonzero structure,
564c1414c8SBarry Smith */
571a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Symmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
584c1414c8SBarry Smith {
594c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
604c1414c8SBarry Smith   PetscErrorCode ierr;
618758e1faSBarry Smith   PetscInt       *work,*ia,*ja,nz,nslim_row,nslim_col,m,row,col,n;
628758e1faSBarry Smith   PetscInt       *tns,*tvc,*ns_row = a->inode.size,*ns_col,nsz,i1,i2;
638758e1faSBarry Smith   const PetscInt *j,*jmax,*ai= a->i,*aj = a->j;
644c1414c8SBarry Smith 
654c1414c8SBarry Smith   PetscFunctionBegin;
664c1414c8SBarry Smith   nslim_row = a->inode.node_count;
67d0f46423SBarry Smith   m         = A->rmap->n;
68d0f46423SBarry Smith   n         = A->cmap->n;
69e32f2f54SBarry Smith   if (m != n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRowIJ_SeqAIJ_Inode_Symmetric: Matrix should be square");
70b215bc84SStefano Zampini   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
714c1414c8SBarry Smith 
724c1414c8SBarry Smith   /* Use the row_inode as column_inode */
734c1414c8SBarry Smith   nslim_col = nslim_row;
744c1414c8SBarry Smith   ns_col    = ns_row;
754c1414c8SBarry Smith 
764c1414c8SBarry Smith   /* allocate space for reformated inode structure */
77580bdb30SBarry Smith   ierr = PetscMalloc2(nslim_col+1,&tns,n+1,&tvc);CHKERRQ(ierr);
784c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1]+ ns_row[i1];
794c1414c8SBarry Smith 
804c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
814c1414c8SBarry Smith     nsz = ns_col[i1];
822205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
834c1414c8SBarry Smith   }
844c1414c8SBarry Smith   /* allocate space for row pointers */
85580bdb30SBarry Smith   ierr = PetscCalloc1(nslim_row+1,&ia);CHKERRQ(ierr);
864c1414c8SBarry Smith   *iia = ia;
87854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&work);CHKERRQ(ierr);
884c1414c8SBarry Smith 
894c1414c8SBarry Smith   /* determine the number of columns in each row */
904c1414c8SBarry Smith   ia[0] = oshift;
914c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
924c1414c8SBarry Smith 
934c1414c8SBarry Smith     j    = aj + ai[row] + ishift;
944c1414c8SBarry Smith     jmax = aj + ai[row+1] + ishift;
9583fed2edSSatish Balay     if (j==jmax) continue; /* empty row */
964c1414c8SBarry Smith     col  = *j++ + ishift;
974c1414c8SBarry Smith     i2   = tvc[col];
984c1414c8SBarry Smith     while (i2<i1 && j<jmax) { /* 1.[-xx-d-xx--] 2.[-xx-------],off-diagonal elemets */
994c1414c8SBarry Smith       ia[i1+1]++;
1004c1414c8SBarry Smith       ia[i2+1]++;
1014c1414c8SBarry Smith       i2++;                     /* Start col of next node */
10290d2dec7SBarry Smith       while ((j<jmax) && ((col=*j+ishift)<tns[i2])) ++j;
1034c1414c8SBarry Smith       i2 = tvc[col];
1044c1414c8SBarry Smith     }
1054c1414c8SBarry Smith     if (i2 == i1) ia[i2+1]++;    /* now the diagonal element */
1064c1414c8SBarry Smith   }
1074c1414c8SBarry Smith 
1084c1414c8SBarry Smith   /* shift ia[i] to point to next row */
1094c1414c8SBarry Smith   for (i1=1; i1<nslim_row+1; i1++) {
1104c1414c8SBarry Smith     row        = ia[i1-1];
1114c1414c8SBarry Smith     ia[i1]    += row;
1124c1414c8SBarry Smith     work[i1-1] = row - oshift;
1134c1414c8SBarry Smith   }
1144c1414c8SBarry Smith 
1154c1414c8SBarry Smith   /* allocate space for column pointers */
1164c1414c8SBarry Smith   nz   = ia[nslim_row] + (!ishift);
117785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
1184c1414c8SBarry Smith   *jja = ja;
1194c1414c8SBarry Smith 
1204c1414c8SBarry Smith   /* loop over lower triangular part putting into ja */
1214c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row += ns_row[i1],i1++) {
1224c1414c8SBarry Smith     j    = aj + ai[row] + ishift;
1234c1414c8SBarry Smith     jmax = aj + ai[row+1] + ishift;
12483fed2edSSatish Balay     if (j==jmax) continue; /* empty row */
1254c1414c8SBarry Smith     col  = *j++ + ishift;
1264c1414c8SBarry Smith     i2   = tvc[col];
1274c1414c8SBarry Smith     while (i2<i1 && j<jmax) {
1284c1414c8SBarry Smith       ja[work[i2]++] = i1 + oshift;
1294c1414c8SBarry Smith       ja[work[i1]++] = i2 + oshift;
1304c1414c8SBarry Smith       ++i2;
13190d2dec7SBarry Smith       while ((j<jmax) && ((col=*j+ishift)< tns[i2])) ++j; /* Skip rest col indices in this node */
1324c1414c8SBarry Smith       i2 = tvc[col];
1334c1414c8SBarry Smith     }
1344c1414c8SBarry Smith     if (i2 == i1) ja[work[i1]++] = i2 + oshift;
1354c1414c8SBarry Smith 
1364c1414c8SBarry Smith   }
1374c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
138580bdb30SBarry Smith   ierr = PetscFree2(tns,tvc);CHKERRQ(ierr);
1394c1414c8SBarry Smith   PetscFunctionReturn(0);
1404c1414c8SBarry Smith }
1414c1414c8SBarry Smith 
1424c1414c8SBarry Smith /*
1434c1414c8SBarry Smith       This builds nonsymmetric version of nonzero structure,
1444c1414c8SBarry Smith */
1451a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
1464c1414c8SBarry Smith {
1474c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
1484c1414c8SBarry Smith   PetscErrorCode ierr;
1498758e1faSBarry Smith   PetscInt       *work,*ia,*ja,nz,nslim_row,n,row,col,*ns_col,nslim_col;
1508758e1faSBarry Smith   PetscInt       *tns,*tvc,nsz,i1,i2;
1518758e1faSBarry Smith   const PetscInt *j,*ai= a->i,*aj = a->j,*ns_row = a->inode.size;
1524c1414c8SBarry Smith 
1534c1414c8SBarry Smith   PetscFunctionBegin;
154b215bc84SStefano Zampini   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
1554c1414c8SBarry Smith   nslim_row = a->inode.node_count;
156d0f46423SBarry Smith   n         = A->cmap->n;
1574c1414c8SBarry Smith 
1584c1414c8SBarry Smith   /* Create The column_inode for this matrix */
159470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,&nslim_col,&ns_col);CHKERRQ(ierr);
1604c1414c8SBarry Smith 
1614c1414c8SBarry Smith   /* allocate space for reformated column_inode structure */
162580bdb30SBarry Smith   ierr = PetscMalloc2(nslim_col +1,&tns,n + 1,&tvc);CHKERRQ(ierr);
1634c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1] + ns_col[i1];
1644c1414c8SBarry Smith 
1654c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
1664c1414c8SBarry Smith     nsz = ns_col[i1];
1672205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
1684c1414c8SBarry Smith   }
1694c1414c8SBarry Smith   /* allocate space for row pointers */
170580bdb30SBarry Smith   ierr = PetscCalloc1(nslim_row+1,&ia);CHKERRQ(ierr);
1714c1414c8SBarry Smith   *iia = ia;
172854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&work);CHKERRQ(ierr);
1734c1414c8SBarry Smith 
1744c1414c8SBarry Smith   /* determine the number of columns in each row */
1754c1414c8SBarry Smith   ia[0] = oshift;
1764c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
1774c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
17883fed2edSSatish Balay     nz  = ai[row+1] - ai[row];
17983fed2edSSatish Balay     if (!nz) continue; /* empty row */
1804c1414c8SBarry Smith     col = *j++ + ishift;
1814c1414c8SBarry Smith     i2  = tvc[col];
1824c1414c8SBarry Smith     while (nz-- > 0) {           /* off-diagonal elemets */
1834c1414c8SBarry Smith       ia[i1+1]++;
1844c1414c8SBarry Smith       i2++;                     /* Start col of next node */
185a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
1864c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
1874c1414c8SBarry Smith     }
1884c1414c8SBarry Smith   }
1894c1414c8SBarry Smith 
1904c1414c8SBarry Smith   /* shift ia[i] to point to next row */
1914c1414c8SBarry Smith   for (i1=1; i1<nslim_row+1; i1++) {
1924c1414c8SBarry Smith     row        = ia[i1-1];
1934c1414c8SBarry Smith     ia[i1]    += row;
1944c1414c8SBarry Smith     work[i1-1] = row - oshift;
1954c1414c8SBarry Smith   }
1964c1414c8SBarry Smith 
1974c1414c8SBarry Smith   /* allocate space for column pointers */
1984c1414c8SBarry Smith   nz   = ia[nslim_row] + (!ishift);
199785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
2004c1414c8SBarry Smith   *jja = ja;
2014c1414c8SBarry Smith 
2024c1414c8SBarry Smith   /* loop over matrix putting into ja */
2034c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
2044c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
20583fed2edSSatish Balay     nz  = ai[row+1] - ai[row];
20683fed2edSSatish Balay     if (!nz) continue; /* empty row */
2074c1414c8SBarry Smith     col = *j++ + ishift;
2084c1414c8SBarry Smith     i2  = tvc[col];
2094c1414c8SBarry Smith     while (nz-- > 0) {
2104c1414c8SBarry Smith       ja[work[i1]++] = i2 + oshift;
2114c1414c8SBarry Smith       ++i2;
212a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
2134c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
2144c1414c8SBarry Smith     }
2154c1414c8SBarry Smith   }
2164c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
2174c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
218580bdb30SBarry Smith   ierr = PetscFree2(tns,tvc);CHKERRQ(ierr);
2194c1414c8SBarry Smith   PetscFunctionReturn(0);
2204c1414c8SBarry Smith }
2214c1414c8SBarry Smith 
2221a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
2234c1414c8SBarry Smith {
2244c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
2254c1414c8SBarry Smith   PetscErrorCode ierr;
2264c1414c8SBarry Smith 
2274c1414c8SBarry Smith   PetscFunctionBegin;
2284c1414c8SBarry Smith   *n = a->inode.node_count;
2294c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
2308f7157efSSatish Balay   if (!blockcompressed) {
231feb237baSPierre Jolivet     ierr = MatGetRowIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);
2328f7157efSSatish Balay   } else if (symmetric) {
2334108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Symmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
2344c1414c8SBarry Smith   } else {
2354108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
2364c1414c8SBarry Smith   }
2374c1414c8SBarry Smith   PetscFunctionReturn(0);
2384c1414c8SBarry Smith }
2394c1414c8SBarry Smith 
2401a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
2414c1414c8SBarry Smith {
2424c1414c8SBarry Smith   PetscErrorCode ierr;
2434c1414c8SBarry Smith 
2444c1414c8SBarry Smith   PetscFunctionBegin;
2454c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
2468f7157efSSatish Balay 
2478f7157efSSatish Balay   if (!blockcompressed) {
248feb237baSPierre Jolivet     ierr = MatRestoreRowIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);
2498f7157efSSatish Balay   } else {
2504c1414c8SBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
2514c1414c8SBarry Smith     ierr = PetscFree(*ja);CHKERRQ(ierr);
2528f7157efSSatish Balay   }
2534c1414c8SBarry Smith   PetscFunctionReturn(0);
2544c1414c8SBarry Smith }
2554c1414c8SBarry Smith 
2564c1414c8SBarry Smith /* ----------------------------------------------------------- */
2574c1414c8SBarry Smith 
2581a83f524SJed Brown static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
2594c1414c8SBarry Smith {
2604c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
2614c1414c8SBarry Smith   PetscErrorCode ierr;
2624c1414c8SBarry Smith   PetscInt       *work,*ia,*ja,*j,nz,nslim_row, n,row,col,*ns_col,nslim_col;
2634c1414c8SBarry Smith   PetscInt       *tns,*tvc,*ns_row = a->inode.size,nsz,i1,i2,*ai= a->i,*aj = a->j;
2644c1414c8SBarry Smith 
2654c1414c8SBarry Smith   PetscFunctionBegin;
266b215bc84SStefano Zampini   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
2674c1414c8SBarry Smith   nslim_row = a->inode.node_count;
268d0f46423SBarry Smith   n         = A->cmap->n;
2694c1414c8SBarry Smith 
2704c1414c8SBarry Smith   /* Create The column_inode for this matrix */
271470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,&nslim_col,&ns_col);CHKERRQ(ierr);
2724c1414c8SBarry Smith 
2734c1414c8SBarry Smith   /* allocate space for reformated column_inode structure */
274580bdb30SBarry Smith   ierr = PetscMalloc2(nslim_col + 1,&tns,n + 1,&tvc);CHKERRQ(ierr);
2754c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1] + ns_col[i1];
2764c1414c8SBarry Smith 
2774c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
2784c1414c8SBarry Smith     nsz = ns_col[i1];
2792205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
2804c1414c8SBarry Smith   }
2814c1414c8SBarry Smith   /* allocate space for column pointers */
282580bdb30SBarry Smith   ierr = PetscCalloc1(nslim_col+1,&ia);CHKERRQ(ierr);
2834c1414c8SBarry Smith   *iia = ia;
284854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col+1,&work);CHKERRQ(ierr);
2854c1414c8SBarry Smith 
2864c1414c8SBarry Smith   /* determine the number of columns in each row */
2874c1414c8SBarry Smith   ia[0] = oshift;
2884c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
2894c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
2904c1414c8SBarry Smith     col = *j++ + ishift;
2914c1414c8SBarry Smith     i2  = tvc[col];
2924c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
2934c1414c8SBarry Smith     while (nz-- > 0) {           /* off-diagonal elemets */
2944c1414c8SBarry Smith       /* ia[i1+1]++; */
2954c1414c8SBarry Smith       ia[i2+1]++;
2964c1414c8SBarry Smith       i2++;
297a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
2984c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
2994c1414c8SBarry Smith     }
3004c1414c8SBarry Smith   }
3014c1414c8SBarry Smith 
3024c1414c8SBarry Smith   /* shift ia[i] to point to next col */
3034c1414c8SBarry Smith   for (i1=1; i1<nslim_col+1; i1++) {
3044c1414c8SBarry Smith     col        = ia[i1-1];
3054c1414c8SBarry Smith     ia[i1]    += col;
3064c1414c8SBarry Smith     work[i1-1] = col - oshift;
3074c1414c8SBarry Smith   }
3084c1414c8SBarry Smith 
3094c1414c8SBarry Smith   /* allocate space for column pointers */
3104c1414c8SBarry Smith   nz   = ia[nslim_col] + (!ishift);
311785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
3124c1414c8SBarry Smith   *jja = ja;
3134c1414c8SBarry Smith 
3144c1414c8SBarry Smith   /* loop over matrix putting into ja */
3154c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
3164c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
3174c1414c8SBarry Smith     col = *j++ + ishift;
3184c1414c8SBarry Smith     i2  = tvc[col];
3194c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
3204c1414c8SBarry Smith     while (nz-- > 0) {
3214c1414c8SBarry Smith       /* ja[work[i1]++] = i2 + oshift; */
3224c1414c8SBarry Smith       ja[work[i2]++] = i1 + oshift;
3234c1414c8SBarry Smith       i2++;
324a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
3254c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
3264c1414c8SBarry Smith     }
3274c1414c8SBarry Smith   }
3284c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
3294c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
330580bdb30SBarry Smith   ierr = PetscFree2(tns,tvc);CHKERRQ(ierr);
3314c1414c8SBarry Smith   PetscFunctionReturn(0);
3324c1414c8SBarry Smith }
3334c1414c8SBarry Smith 
3341a83f524SJed Brown static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
3354c1414c8SBarry Smith {
3364c1414c8SBarry Smith   PetscErrorCode ierr;
3374c1414c8SBarry Smith 
3384c1414c8SBarry Smith   PetscFunctionBegin;
339470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,n,NULL);CHKERRQ(ierr);
3404c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
3414c1414c8SBarry Smith 
3428f7157efSSatish Balay   if (!blockcompressed) {
343feb237baSPierre Jolivet     ierr = MatGetColumnIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);
3448f7157efSSatish Balay   } else if (symmetric) {
345a5b23f4aSJose E. Roman     /* Since the indices are symmetric it doesn't matter */
3464108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Symmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
3474c1414c8SBarry Smith   } else {
3484108e4d5SBarry Smith     ierr = MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
3494c1414c8SBarry Smith   }
3504c1414c8SBarry Smith   PetscFunctionReturn(0);
3514c1414c8SBarry Smith }
3524c1414c8SBarry Smith 
3531a83f524SJed Brown static PetscErrorCode MatRestoreColumnIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
3544c1414c8SBarry Smith {
3554c1414c8SBarry Smith   PetscErrorCode ierr;
3564c1414c8SBarry Smith 
3574c1414c8SBarry Smith   PetscFunctionBegin;
3584c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
3598f7157efSSatish Balay   if (!blockcompressed) {
360feb237baSPierre Jolivet     ierr = MatRestoreColumnIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);
3618f7157efSSatish Balay   } else {
3624c1414c8SBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
3634c1414c8SBarry Smith     ierr = PetscFree(*ja);CHKERRQ(ierr);
3648f7157efSSatish Balay   }
3654c1414c8SBarry Smith   PetscFunctionReturn(0);
3664c1414c8SBarry Smith }
3674c1414c8SBarry Smith 
3684c1414c8SBarry Smith /* ----------------------------------------------------------- */
3694c1414c8SBarry Smith 
370b215bc84SStefano Zampini PetscErrorCode MatMult_SeqAIJ_Inode(Mat A,Vec xx,Vec yy)
3714c1414c8SBarry Smith {
3724c1414c8SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
3734c1414c8SBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5,tmp0,tmp1;
374d9fead3dSBarry Smith   PetscScalar       *y;
375dd6ea824SBarry Smith   const PetscScalar *x;
376dd6ea824SBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5;
3774c1414c8SBarry Smith   PetscErrorCode    ierr;
3788758e1faSBarry Smith   PetscInt          i1,i2,n,i,row,node_max,nsz,sz,nonzerorow=0;
3798758e1faSBarry Smith   const PetscInt    *idx,*ns,*ii;
3804c1414c8SBarry Smith 
3814c1414c8SBarry Smith #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
3824c1414c8SBarry Smith #pragma disjoint(*x,*y,*v1,*v2,*v3,*v4,*v5)
3834c1414c8SBarry Smith #endif
3844c1414c8SBarry Smith 
3854c1414c8SBarry Smith   PetscFunctionBegin;
386e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
3874c1414c8SBarry Smith   node_max = a->inode.node_count;
3884c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
3893649974fSBarry Smith   ierr     = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
3904c1414c8SBarry Smith   ierr     = VecGetArray(yy,&y);CHKERRQ(ierr);
3914c1414c8SBarry Smith   idx      = a->j;
3924c1414c8SBarry Smith   v1       = a->a;
3934c1414c8SBarry Smith   ii       = a->i;
3944c1414c8SBarry Smith 
3954c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
3964c1414c8SBarry Smith     nsz         = ns[i];
3974c1414c8SBarry Smith     n           = ii[1] - ii[0];
39898c9bda7SSatish Balay     nonzerorow += (n>0)*nsz;
3994c1414c8SBarry Smith     ii         += nsz;
40050d8bf02SJed Brown     PetscPrefetchBlock(idx+nsz*n,n,0,PETSC_PREFETCH_HINT_NTA);    /* Prefetch the indices for the block row after the current one */
40150d8bf02SJed Brown     PetscPrefetchBlock(v1+nsz*n,nsz*n,0,PETSC_PREFETCH_HINT_NTA); /* Prefetch the values for the block row after the current one  */
4024c1414c8SBarry Smith     sz = n;                     /* No of non zeros in this row */
4034c1414c8SBarry Smith                                 /* Switch on the size of Node */
4044c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
4054c1414c8SBarry Smith     case 1:
40675567043SBarry Smith       sum1 = 0.;
4074c1414c8SBarry Smith 
4084c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4094c1414c8SBarry Smith         i1    = idx[0];         /* The instructions are ordered to */
4104c1414c8SBarry Smith         i2    = idx[1];         /* make the compiler's job easy */
4114c1414c8SBarry Smith         idx  += 2;
4124c1414c8SBarry Smith         tmp0  = x[i1];
4134c1414c8SBarry Smith         tmp1  = x[i2];
4144c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4154c1414c8SBarry Smith       }
4164c1414c8SBarry Smith 
4174c1414c8SBarry Smith       if (n == sz-1) {          /* Take care of the last nonzero  */
4184c1414c8SBarry Smith         tmp0  = x[*idx++];
4194c1414c8SBarry Smith         sum1 += *v1++ *tmp0;
4204c1414c8SBarry Smith       }
4214c1414c8SBarry Smith       y[row++]=sum1;
4224c1414c8SBarry Smith       break;
4234c1414c8SBarry Smith     case 2:
42475567043SBarry Smith       sum1 = 0.;
42575567043SBarry Smith       sum2 = 0.;
4264c1414c8SBarry Smith       v2   = v1 + n;
4274c1414c8SBarry Smith 
4284c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4294c1414c8SBarry Smith         i1    = idx[0];
4304c1414c8SBarry Smith         i2    = idx[1];
4314c1414c8SBarry Smith         idx  += 2;
4324c1414c8SBarry Smith         tmp0  = x[i1];
4334c1414c8SBarry Smith         tmp1  = x[i2];
4344c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4354c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
4364c1414c8SBarry Smith       }
4374c1414c8SBarry Smith       if (n == sz-1) {
4384c1414c8SBarry Smith         tmp0  = x[*idx++];
4394c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
4404c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
4414c1414c8SBarry Smith       }
4424c1414c8SBarry Smith       y[row++]=sum1;
4434c1414c8SBarry Smith       y[row++]=sum2;
4444c1414c8SBarry Smith       v1      =v2;              /* Since the next block to be processed starts there*/
4454c1414c8SBarry Smith       idx    +=sz;
4464c1414c8SBarry Smith       break;
4474c1414c8SBarry Smith     case 3:
44875567043SBarry Smith       sum1 = 0.;
44975567043SBarry Smith       sum2 = 0.;
45075567043SBarry Smith       sum3 = 0.;
4514c1414c8SBarry Smith       v2   = v1 + n;
4524c1414c8SBarry Smith       v3   = v2 + n;
4534c1414c8SBarry Smith 
4544c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4554c1414c8SBarry Smith         i1    = idx[0];
4564c1414c8SBarry Smith         i2    = idx[1];
4574c1414c8SBarry Smith         idx  += 2;
4584c1414c8SBarry Smith         tmp0  = x[i1];
4594c1414c8SBarry Smith         tmp1  = x[i2];
4604c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4614c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
4624c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
4634c1414c8SBarry Smith       }
4644c1414c8SBarry Smith       if (n == sz-1) {
4654c1414c8SBarry Smith         tmp0  = x[*idx++];
4664c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
4674c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
4684c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
4694c1414c8SBarry Smith       }
4704c1414c8SBarry Smith       y[row++]=sum1;
4714c1414c8SBarry Smith       y[row++]=sum2;
4724c1414c8SBarry Smith       y[row++]=sum3;
4734c1414c8SBarry Smith       v1      =v3;              /* Since the next block to be processed starts there*/
4744c1414c8SBarry Smith       idx    +=2*sz;
4754c1414c8SBarry Smith       break;
4764c1414c8SBarry Smith     case 4:
47775567043SBarry Smith       sum1 = 0.;
47875567043SBarry Smith       sum2 = 0.;
47975567043SBarry Smith       sum3 = 0.;
48075567043SBarry Smith       sum4 = 0.;
4814c1414c8SBarry Smith       v2   = v1 + n;
4824c1414c8SBarry Smith       v3   = v2 + n;
4834c1414c8SBarry Smith       v4   = v3 + n;
4844c1414c8SBarry Smith 
4854c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4864c1414c8SBarry Smith         i1    = idx[0];
4874c1414c8SBarry Smith         i2    = idx[1];
4884c1414c8SBarry Smith         idx  += 2;
4894c1414c8SBarry Smith         tmp0  = x[i1];
4904c1414c8SBarry Smith         tmp1  = x[i2];
4914c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
4924c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
4934c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
4944c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
4954c1414c8SBarry Smith       }
4964c1414c8SBarry Smith       if (n == sz-1) {
4974c1414c8SBarry Smith         tmp0  = x[*idx++];
4984c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
4994c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
5004c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
5014c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
5024c1414c8SBarry Smith       }
5034c1414c8SBarry Smith       y[row++]=sum1;
5044c1414c8SBarry Smith       y[row++]=sum2;
5054c1414c8SBarry Smith       y[row++]=sum3;
5064c1414c8SBarry Smith       y[row++]=sum4;
5074c1414c8SBarry Smith       v1      =v4;              /* Since the next block to be processed starts there*/
5084c1414c8SBarry Smith       idx    +=3*sz;
5094c1414c8SBarry Smith       break;
5104c1414c8SBarry Smith     case 5:
51175567043SBarry Smith       sum1 = 0.;
51275567043SBarry Smith       sum2 = 0.;
51375567043SBarry Smith       sum3 = 0.;
51475567043SBarry Smith       sum4 = 0.;
51575567043SBarry Smith       sum5 = 0.;
5164c1414c8SBarry Smith       v2   = v1 + n;
5174c1414c8SBarry Smith       v3   = v2 + n;
5184c1414c8SBarry Smith       v4   = v3 + n;
5194c1414c8SBarry Smith       v5   = v4 + n;
5204c1414c8SBarry Smith 
5214c1414c8SBarry Smith       for (n = 0; n<sz-1; n+=2) {
5224c1414c8SBarry Smith         i1    = idx[0];
5234c1414c8SBarry Smith         i2    = idx[1];
5244c1414c8SBarry Smith         idx  += 2;
5254c1414c8SBarry Smith         tmp0  = x[i1];
5264c1414c8SBarry Smith         tmp1  = x[i2];
5274c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
5284c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
5294c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
5304c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
5314c1414c8SBarry Smith         sum5 += v5[0] * tmp0 + v5[1] *tmp1; v5 += 2;
5324c1414c8SBarry Smith       }
5334c1414c8SBarry Smith       if (n == sz-1) {
5344c1414c8SBarry Smith         tmp0  = x[*idx++];
5354c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
5364c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
5374c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
5384c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
5394c1414c8SBarry Smith         sum5 += *v5++ * tmp0;
5404c1414c8SBarry Smith       }
5414c1414c8SBarry Smith       y[row++]=sum1;
5424c1414c8SBarry Smith       y[row++]=sum2;
5434c1414c8SBarry Smith       y[row++]=sum3;
5444c1414c8SBarry Smith       y[row++]=sum4;
5454c1414c8SBarry Smith       y[row++]=sum5;
5464c1414c8SBarry Smith       v1      =v5;       /* Since the next block to be processed starts there */
5474c1414c8SBarry Smith       idx    +=4*sz;
5484c1414c8SBarry Smith       break;
5494c1414c8SBarry Smith     default:
550e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported");
5514c1414c8SBarry Smith     }
5524c1414c8SBarry Smith   }
5533649974fSBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5544c1414c8SBarry Smith   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
555dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz - nonzerorow);CHKERRQ(ierr);
5564c1414c8SBarry Smith   PetscFunctionReturn(0);
5574c1414c8SBarry Smith }
5584c1414c8SBarry Smith /* ----------------------------------------------------------- */
5594108e4d5SBarry Smith /* Almost same code as the MatMult_SeqAIJ_Inode() */
560b215bc84SStefano Zampini PetscErrorCode MatMultAdd_SeqAIJ_Inode(Mat A,Vec xx,Vec zz,Vec yy)
5614c1414c8SBarry Smith {
5624c1414c8SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
5634c1414c8SBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5,tmp0,tmp1;
5648758e1faSBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5;
5658758e1faSBarry Smith   const PetscScalar *x;
5668758e1faSBarry Smith   PetscScalar       *y,*z,*zt;
5674c1414c8SBarry Smith   PetscErrorCode    ierr;
5688758e1faSBarry Smith   PetscInt          i1,i2,n,i,row,node_max,nsz,sz;
5698758e1faSBarry Smith   const PetscInt    *idx,*ns,*ii;
5704c1414c8SBarry Smith 
5714c1414c8SBarry Smith   PetscFunctionBegin;
572e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
5734c1414c8SBarry Smith   node_max = a->inode.node_count;
5744c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
5752205254eSKarl Rupp 
5768758e1faSBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
577f95e332cSBarry Smith   ierr = VecGetArrayPair(zz,yy,&z,&y);CHKERRQ(ierr);
5784c1414c8SBarry Smith   zt = z;
5794c1414c8SBarry Smith 
5804c1414c8SBarry Smith   idx = a->j;
5814c1414c8SBarry Smith   v1  = a->a;
5824c1414c8SBarry Smith   ii  = a->i;
5834c1414c8SBarry Smith 
5844c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
5854c1414c8SBarry Smith     nsz = ns[i];
5864c1414c8SBarry Smith     n   = ii[1] - ii[0];
5874c1414c8SBarry Smith     ii += nsz;
5884c1414c8SBarry Smith     sz  = n;                    /* No of non zeros in this row */
5894c1414c8SBarry Smith                                 /* Switch on the size of Node */
5904c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
5914c1414c8SBarry Smith     case 1:
5924c1414c8SBarry Smith       sum1 = *zt++;
5934c1414c8SBarry Smith 
5944c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
5954c1414c8SBarry Smith         i1    = idx[0];         /* The instructions are ordered to */
5964c1414c8SBarry Smith         i2    = idx[1];         /* make the compiler's job easy */
5974c1414c8SBarry Smith         idx  += 2;
5984c1414c8SBarry Smith         tmp0  = x[i1];
5994c1414c8SBarry Smith         tmp1  = x[i2];
6004c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6014c1414c8SBarry Smith       }
6024c1414c8SBarry Smith 
6034c1414c8SBarry Smith       if (n   == sz-1) {          /* Take care of the last nonzero  */
6044c1414c8SBarry Smith         tmp0  = x[*idx++];
6054c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6064c1414c8SBarry Smith       }
6074c1414c8SBarry Smith       y[row++]=sum1;
6084c1414c8SBarry Smith       break;
6094c1414c8SBarry Smith     case 2:
6104c1414c8SBarry Smith       sum1 = *zt++;
6114c1414c8SBarry Smith       sum2 = *zt++;
6124c1414c8SBarry Smith       v2   = v1 + n;
6134c1414c8SBarry Smith 
6144c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6154c1414c8SBarry Smith         i1    = idx[0];
6164c1414c8SBarry Smith         i2    = idx[1];
6174c1414c8SBarry Smith         idx  += 2;
6184c1414c8SBarry Smith         tmp0  = x[i1];
6194c1414c8SBarry Smith         tmp1  = x[i2];
6204c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6214c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
6224c1414c8SBarry Smith       }
6234c1414c8SBarry Smith       if (n   == sz-1) {
6244c1414c8SBarry Smith         tmp0  = x[*idx++];
6254c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6264c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6274c1414c8SBarry Smith       }
6284c1414c8SBarry Smith       y[row++]=sum1;
6294c1414c8SBarry Smith       y[row++]=sum2;
6304c1414c8SBarry Smith       v1      =v2;              /* Since the next block to be processed starts there*/
6314c1414c8SBarry Smith       idx    +=sz;
6324c1414c8SBarry Smith       break;
6334c1414c8SBarry Smith     case 3:
6344c1414c8SBarry Smith       sum1 = *zt++;
6354c1414c8SBarry Smith       sum2 = *zt++;
6364c1414c8SBarry Smith       sum3 = *zt++;
6374c1414c8SBarry Smith       v2   = v1 + n;
6384c1414c8SBarry Smith       v3   = v2 + n;
6394c1414c8SBarry Smith 
6404c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6414c1414c8SBarry Smith         i1    = idx[0];
6424c1414c8SBarry Smith         i2    = idx[1];
6434c1414c8SBarry Smith         idx  += 2;
6444c1414c8SBarry Smith         tmp0  = x[i1];
6454c1414c8SBarry Smith         tmp1  = x[i2];
6464c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6474c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
6484c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
6494c1414c8SBarry Smith       }
6504c1414c8SBarry Smith       if (n == sz-1) {
6514c1414c8SBarry Smith         tmp0  = x[*idx++];
6524c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6534c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6544c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
6554c1414c8SBarry Smith       }
6564c1414c8SBarry Smith       y[row++]=sum1;
6574c1414c8SBarry Smith       y[row++]=sum2;
6584c1414c8SBarry Smith       y[row++]=sum3;
6594c1414c8SBarry Smith       v1      =v3;              /* Since the next block to be processed starts there*/
6604c1414c8SBarry Smith       idx    +=2*sz;
6614c1414c8SBarry Smith       break;
6624c1414c8SBarry Smith     case 4:
6634c1414c8SBarry Smith       sum1 = *zt++;
6644c1414c8SBarry Smith       sum2 = *zt++;
6654c1414c8SBarry Smith       sum3 = *zt++;
6664c1414c8SBarry Smith       sum4 = *zt++;
6674c1414c8SBarry Smith       v2   = v1 + n;
6684c1414c8SBarry Smith       v3   = v2 + n;
6694c1414c8SBarry Smith       v4   = v3 + n;
6704c1414c8SBarry Smith 
6714c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6724c1414c8SBarry Smith         i1    = idx[0];
6734c1414c8SBarry Smith         i2    = idx[1];
6744c1414c8SBarry Smith         idx  += 2;
6754c1414c8SBarry Smith         tmp0  = x[i1];
6764c1414c8SBarry Smith         tmp1  = x[i2];
6774c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
6784c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
6794c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
6804c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
6814c1414c8SBarry Smith       }
6824c1414c8SBarry Smith       if (n == sz-1) {
6834c1414c8SBarry Smith         tmp0  = x[*idx++];
6844c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6854c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6864c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
6874c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
6884c1414c8SBarry Smith       }
6894c1414c8SBarry Smith       y[row++]=sum1;
6904c1414c8SBarry Smith       y[row++]=sum2;
6914c1414c8SBarry Smith       y[row++]=sum3;
6924c1414c8SBarry Smith       y[row++]=sum4;
6934c1414c8SBarry Smith       v1      =v4;              /* Since the next block to be processed starts there*/
6944c1414c8SBarry Smith       idx    +=3*sz;
6954c1414c8SBarry Smith       break;
6964c1414c8SBarry Smith     case 5:
6974c1414c8SBarry Smith       sum1 = *zt++;
6984c1414c8SBarry Smith       sum2 = *zt++;
6994c1414c8SBarry Smith       sum3 = *zt++;
7004c1414c8SBarry Smith       sum4 = *zt++;
7014c1414c8SBarry Smith       sum5 = *zt++;
7024c1414c8SBarry Smith       v2   = v1 + n;
7034c1414c8SBarry Smith       v3   = v2 + n;
7044c1414c8SBarry Smith       v4   = v3 + n;
7054c1414c8SBarry Smith       v5   = v4 + n;
7064c1414c8SBarry Smith 
7074c1414c8SBarry Smith       for (n = 0; n<sz-1; n+=2) {
7084c1414c8SBarry Smith         i1    = idx[0];
7094c1414c8SBarry Smith         i2    = idx[1];
7104c1414c8SBarry Smith         idx  += 2;
7114c1414c8SBarry Smith         tmp0  = x[i1];
7124c1414c8SBarry Smith         tmp1  = x[i2];
7134c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
7144c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
7154c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
7164c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
7174c1414c8SBarry Smith         sum5 += v5[0] * tmp0 + v5[1] *tmp1; v5 += 2;
7184c1414c8SBarry Smith       }
7194c1414c8SBarry Smith       if (n   == sz-1) {
7204c1414c8SBarry Smith         tmp0  = x[*idx++];
7214c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
7224c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
7234c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
7244c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
7254c1414c8SBarry Smith         sum5 += *v5++ * tmp0;
7264c1414c8SBarry Smith       }
7274c1414c8SBarry Smith       y[row++]=sum1;
7284c1414c8SBarry Smith       y[row++]=sum2;
7294c1414c8SBarry Smith       y[row++]=sum3;
7304c1414c8SBarry Smith       y[row++]=sum4;
7314c1414c8SBarry Smith       y[row++]=sum5;
7324c1414c8SBarry Smith       v1      =v5;       /* Since the next block to be processed starts there */
7334c1414c8SBarry Smith       idx    +=4*sz;
7344c1414c8SBarry Smith       break;
7354c1414c8SBarry Smith     default:
736e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported");
7374c1414c8SBarry Smith     }
7384c1414c8SBarry Smith   }
7398758e1faSBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
740f95e332cSBarry Smith   ierr = VecRestoreArrayPair(zz,yy,&z,&y);CHKERRQ(ierr);
741dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
7424c1414c8SBarry Smith   PetscFunctionReturn(0);
7434c1414c8SBarry Smith }
7444c1414c8SBarry Smith 
7454c1414c8SBarry Smith /* ----------------------------------------------------------- */
746ad04f41aSHong Zhang PetscErrorCode MatSolve_SeqAIJ_Inode_inplace(Mat A,Vec bb,Vec xx)
7474c1414c8SBarry Smith {
7484c1414c8SBarry Smith   Mat_SeqAIJ        *a    = (Mat_SeqAIJ*)A->data;
7494c1414c8SBarry Smith   IS                iscol = a->col,isrow = a->row;
7504c1414c8SBarry Smith   PetscErrorCode    ierr;
7515d0c19d7SBarry Smith   const PetscInt    *r,*c,*rout,*cout;
7528758e1faSBarry Smith   PetscInt          i,j,n = A->rmap->n,nz;
7538758e1faSBarry Smith   PetscInt          node_max,*ns,row,nsz,aii,i0,i1;
7548758e1faSBarry Smith   const PetscInt    *ai = a->i,*a_j = a->j,*vi,*ad,*aj;
755d9fead3dSBarry Smith   PetscScalar       *x,*tmp,*tmps,tmp0,tmp1;
756d9fead3dSBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5;
757dd6ea824SBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5,*a_a = a->a,*aa;
758dd6ea824SBarry Smith   const PetscScalar *b;
7594c1414c8SBarry Smith 
7604c1414c8SBarry Smith   PetscFunctionBegin;
761e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
7624c1414c8SBarry Smith   node_max = a->inode.node_count;
7634c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
7644c1414c8SBarry Smith 
7653649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
766fdc842d1SBarry Smith   ierr = VecGetArrayWrite(xx,&x);CHKERRQ(ierr);
7674c1414c8SBarry Smith   tmp  = a->solve_work;
7684c1414c8SBarry Smith 
7694c1414c8SBarry Smith   ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout;
7704c1414c8SBarry Smith   ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1);
7714c1414c8SBarry Smith 
7724c1414c8SBarry Smith   /* forward solve the lower triangular */
7734c1414c8SBarry Smith   tmps = tmp;
7744c1414c8SBarry Smith   aa   = a_a;
7754c1414c8SBarry Smith   aj   = a_j;
7764c1414c8SBarry Smith   ad   = a->diag;
7774c1414c8SBarry Smith 
7784c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
7794c1414c8SBarry Smith     nsz = ns[i];
7804c1414c8SBarry Smith     aii = ai[row];
7814c1414c8SBarry Smith     v1  = aa + aii;
7824c1414c8SBarry Smith     vi  = aj + aii;
7834c1414c8SBarry Smith     nz  = ad[row]- aii;
78426549573SJed Brown     if (i < node_max-1) {
78526549573SJed Brown       /* Prefetch the block after the current one, the prefetch itself can't cause a memory error,
78626549573SJed Brown       * but our indexing to determine it's size could. */
78750d8bf02SJed Brown       PetscPrefetchBlock(aj+ai[row+nsz],ad[row+nsz]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA); /* indices */
78826549573SJed Brown       /* In my tests, it seems to be better to fetch entire rows instead of just the lower-triangular part */
78950d8bf02SJed Brown       PetscPrefetchBlock(aa+ai[row+nsz],ad[row+nsz+ns[i+1]-1]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA);
79026549573SJed Brown       /* for (j=0; j<ns[i+1]; j++) PetscPrefetchBlock(aa+ai[row+nsz+j],ad[row+nsz+j]-ai[row+nsz+j],0,0); */
79126549573SJed Brown     }
7924c1414c8SBarry Smith 
7934c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
7944c1414c8SBarry Smith     case 1:
7954c1414c8SBarry Smith       sum1 = b[*r++];
7964c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
7974c1414c8SBarry Smith         i0    = vi[0];
7984c1414c8SBarry Smith         i1    = vi[1];
7994c1414c8SBarry Smith         vi   +=2;
8004c1414c8SBarry Smith         tmp0  = tmps[i0];
8014c1414c8SBarry Smith         tmp1  = tmps[i1];
8024c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8034c1414c8SBarry Smith       }
8044c1414c8SBarry Smith       if (j == nz-1) {
8054c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8064c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8074c1414c8SBarry Smith       }
8084c1414c8SBarry Smith       tmp[row++]=sum1;
8094c1414c8SBarry Smith       break;
8104c1414c8SBarry Smith     case 2:
8114c1414c8SBarry Smith       sum1 = b[*r++];
8124c1414c8SBarry Smith       sum2 = b[*r++];
8134c1414c8SBarry Smith       v2   = aa + ai[row+1];
8144c1414c8SBarry Smith 
8154c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8164c1414c8SBarry Smith         i0    = vi[0];
8174c1414c8SBarry Smith         i1    = vi[1];
8184c1414c8SBarry Smith         vi   +=2;
8194c1414c8SBarry Smith         tmp0  = tmps[i0];
8204c1414c8SBarry Smith         tmp1  = tmps[i1];
8214c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8224c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8234c1414c8SBarry Smith       }
8244c1414c8SBarry Smith       if (j == nz-1) {
8254c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8264c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8274c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8284c1414c8SBarry Smith       }
8294c1414c8SBarry Smith       sum2     -= *v2++ *sum1;
8304c1414c8SBarry Smith       tmp[row++]=sum1;
8314c1414c8SBarry Smith       tmp[row++]=sum2;
8324c1414c8SBarry Smith       break;
8334c1414c8SBarry Smith     case 3:
8344c1414c8SBarry Smith       sum1 = b[*r++];
8354c1414c8SBarry Smith       sum2 = b[*r++];
8364c1414c8SBarry Smith       sum3 = b[*r++];
8374c1414c8SBarry Smith       v2   = aa + ai[row+1];
8384c1414c8SBarry Smith       v3   = aa + ai[row+2];
8394c1414c8SBarry Smith 
8404c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8414c1414c8SBarry Smith         i0    = vi[0];
8424c1414c8SBarry Smith         i1    = vi[1];
8434c1414c8SBarry Smith         vi   +=2;
8444c1414c8SBarry Smith         tmp0  = tmps[i0];
8454c1414c8SBarry Smith         tmp1  = tmps[i1];
8464c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8474c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8484c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
8494c1414c8SBarry Smith       }
8504c1414c8SBarry Smith       if (j == nz-1) {
8514c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8524c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8534c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8544c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
8554c1414c8SBarry Smith       }
8564c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
8574c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
8584c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
8592205254eSKarl Rupp 
8604c1414c8SBarry Smith       tmp[row++]=sum1;
8614c1414c8SBarry Smith       tmp[row++]=sum2;
8624c1414c8SBarry Smith       tmp[row++]=sum3;
8634c1414c8SBarry Smith       break;
8644c1414c8SBarry Smith 
8654c1414c8SBarry Smith     case 4:
8664c1414c8SBarry Smith       sum1 = b[*r++];
8674c1414c8SBarry Smith       sum2 = b[*r++];
8684c1414c8SBarry Smith       sum3 = b[*r++];
8694c1414c8SBarry Smith       sum4 = b[*r++];
8704c1414c8SBarry Smith       v2   = aa + ai[row+1];
8714c1414c8SBarry Smith       v3   = aa + ai[row+2];
8724c1414c8SBarry Smith       v4   = aa + ai[row+3];
8734c1414c8SBarry Smith 
8744c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8754c1414c8SBarry Smith         i0    = vi[0];
8764c1414c8SBarry Smith         i1    = vi[1];
8774c1414c8SBarry Smith         vi   +=2;
8784c1414c8SBarry Smith         tmp0  = tmps[i0];
8794c1414c8SBarry Smith         tmp1  = tmps[i1];
8804c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8814c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8824c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
8834c1414c8SBarry Smith         sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
8844c1414c8SBarry Smith       }
8854c1414c8SBarry Smith       if (j == nz-1) {
8864c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8874c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8884c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8894c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
8904c1414c8SBarry Smith         sum4 -= *v4++ *tmp0;
8914c1414c8SBarry Smith       }
8924c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
8934c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
8944c1414c8SBarry Smith       sum4 -= *v4++ * sum1;
8954c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
8964c1414c8SBarry Smith       sum4 -= *v4++ * sum2;
8974c1414c8SBarry Smith       sum4 -= *v4++ * sum3;
8984c1414c8SBarry Smith 
8994c1414c8SBarry Smith       tmp[row++]=sum1;
9004c1414c8SBarry Smith       tmp[row++]=sum2;
9014c1414c8SBarry Smith       tmp[row++]=sum3;
9024c1414c8SBarry Smith       tmp[row++]=sum4;
9034c1414c8SBarry Smith       break;
9044c1414c8SBarry Smith     case 5:
9054c1414c8SBarry Smith       sum1 = b[*r++];
9064c1414c8SBarry Smith       sum2 = b[*r++];
9074c1414c8SBarry Smith       sum3 = b[*r++];
9084c1414c8SBarry Smith       sum4 = b[*r++];
9094c1414c8SBarry Smith       sum5 = b[*r++];
9104c1414c8SBarry Smith       v2   = aa + ai[row+1];
9114c1414c8SBarry Smith       v3   = aa + ai[row+2];
9124c1414c8SBarry Smith       v4   = aa + ai[row+3];
9134c1414c8SBarry Smith       v5   = aa + ai[row+4];
9144c1414c8SBarry Smith 
9154c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
9164c1414c8SBarry Smith         i0    = vi[0];
9174c1414c8SBarry Smith         i1    = vi[1];
9184c1414c8SBarry Smith         vi   +=2;
9194c1414c8SBarry Smith         tmp0  = tmps[i0];
9204c1414c8SBarry Smith         tmp1  = tmps[i1];
9214c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
9224c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
9234c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
9244c1414c8SBarry Smith         sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
9254c1414c8SBarry Smith         sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
9264c1414c8SBarry Smith       }
9274c1414c8SBarry Smith       if (j == nz-1) {
9284c1414c8SBarry Smith         tmp0  = tmps[*vi++];
9294c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
9304c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
9314c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
9324c1414c8SBarry Smith         sum4 -= *v4++ *tmp0;
9334c1414c8SBarry Smith         sum5 -= *v5++ *tmp0;
9344c1414c8SBarry Smith       }
9354c1414c8SBarry Smith 
9364c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
9374c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
9384c1414c8SBarry Smith       sum4 -= *v4++ * sum1;
9394c1414c8SBarry Smith       sum5 -= *v5++ * sum1;
9404c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
9414c1414c8SBarry Smith       sum4 -= *v4++ * sum2;
9424c1414c8SBarry Smith       sum5 -= *v5++ * sum2;
9434c1414c8SBarry Smith       sum4 -= *v4++ * sum3;
9444c1414c8SBarry Smith       sum5 -= *v5++ * sum3;
9454c1414c8SBarry Smith       sum5 -= *v5++ * sum4;
9464c1414c8SBarry Smith 
9474c1414c8SBarry Smith       tmp[row++]=sum1;
9484c1414c8SBarry Smith       tmp[row++]=sum2;
9494c1414c8SBarry Smith       tmp[row++]=sum3;
9504c1414c8SBarry Smith       tmp[row++]=sum4;
9514c1414c8SBarry Smith       tmp[row++]=sum5;
9524c1414c8SBarry Smith       break;
9534c1414c8SBarry Smith     default:
954546078acSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported ");
9554c1414c8SBarry Smith     }
9564c1414c8SBarry Smith   }
9574c1414c8SBarry Smith   /* backward solve the upper triangular */
9584c1414c8SBarry Smith   for (i=node_max -1,row = n-1; i>=0; i--) {
9594c1414c8SBarry Smith     nsz = ns[i];
9604c1414c8SBarry Smith     aii = ai[row+1] -1;
9614c1414c8SBarry Smith     v1  = aa + aii;
9624c1414c8SBarry Smith     vi  = aj + aii;
9634c1414c8SBarry Smith     nz  = aii- ad[row];
9644c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
9654c1414c8SBarry Smith     case 1:
9664c1414c8SBarry Smith       sum1 = tmp[row];
9674c1414c8SBarry Smith 
9684c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
9694c1414c8SBarry Smith         vi   -=2;
9704c1414c8SBarry Smith         i0    = vi[2];
9714c1414c8SBarry Smith         i1    = vi[1];
9724c1414c8SBarry Smith         tmp0  = tmps[i0];
9734c1414c8SBarry Smith         tmp1  = tmps[i1];
9744c1414c8SBarry Smith         v1   -= 2;
9754c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
9764c1414c8SBarry Smith       }
9774c1414c8SBarry Smith       if (j==1) {
9784c1414c8SBarry Smith         tmp0  = tmps[*vi--];
9794c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
9804c1414c8SBarry Smith       }
9814c1414c8SBarry Smith       x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
9824c1414c8SBarry Smith       break;
9834c1414c8SBarry Smith     case 2:
9844c1414c8SBarry Smith       sum1 = tmp[row];
9854c1414c8SBarry Smith       sum2 = tmp[row -1];
9864c1414c8SBarry Smith       v2   = aa + ai[row]-1;
9874c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
9884c1414c8SBarry Smith         vi   -=2;
9894c1414c8SBarry Smith         i0    = vi[2];
9904c1414c8SBarry Smith         i1    = vi[1];
9914c1414c8SBarry Smith         tmp0  = tmps[i0];
9924c1414c8SBarry Smith         tmp1  = tmps[i1];
9934c1414c8SBarry Smith         v1   -= 2;
9944c1414c8SBarry Smith         v2   -= 2;
9954c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
9964c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
9974c1414c8SBarry Smith       }
9984c1414c8SBarry Smith       if (j==1) {
9994c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10004c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10014c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10024c1414c8SBarry Smith       }
10034c1414c8SBarry Smith 
10044c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10054c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10064c1414c8SBarry Smith       x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10074c1414c8SBarry Smith       break;
10084c1414c8SBarry Smith     case 3:
10094c1414c8SBarry Smith       sum1 = tmp[row];
10104c1414c8SBarry Smith       sum2 = tmp[row -1];
10114c1414c8SBarry Smith       sum3 = tmp[row -2];
10124c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10134c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10144c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10154c1414c8SBarry Smith         vi   -=2;
10164c1414c8SBarry Smith         i0    = vi[2];
10174c1414c8SBarry Smith         i1    = vi[1];
10184c1414c8SBarry Smith         tmp0  = tmps[i0];
10194c1414c8SBarry Smith         tmp1  = tmps[i1];
10204c1414c8SBarry Smith         v1   -= 2;
10214c1414c8SBarry Smith         v2   -= 2;
10224c1414c8SBarry Smith         v3   -= 2;
10234c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10244c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10254c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
10264c1414c8SBarry Smith       }
10274c1414c8SBarry Smith       if (j==1) {
10284c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10294c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10304c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10314c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
10324c1414c8SBarry Smith       }
10334c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10344c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10354c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10364c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10374c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10384c1414c8SBarry Smith       x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
10394c1414c8SBarry Smith 
10404c1414c8SBarry Smith       break;
10414c1414c8SBarry Smith     case 4:
10424c1414c8SBarry Smith       sum1 = tmp[row];
10434c1414c8SBarry Smith       sum2 = tmp[row -1];
10444c1414c8SBarry Smith       sum3 = tmp[row -2];
10454c1414c8SBarry Smith       sum4 = tmp[row -3];
10464c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10474c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10484c1414c8SBarry Smith       v4   = aa + ai[row -2]-1;
10494c1414c8SBarry Smith 
10504c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10514c1414c8SBarry Smith         vi   -=2;
10524c1414c8SBarry Smith         i0    = vi[2];
10534c1414c8SBarry Smith         i1    = vi[1];
10544c1414c8SBarry Smith         tmp0  = tmps[i0];
10554c1414c8SBarry Smith         tmp1  = tmps[i1];
10564c1414c8SBarry Smith         v1   -= 2;
10574c1414c8SBarry Smith         v2   -= 2;
10584c1414c8SBarry Smith         v3   -= 2;
10594c1414c8SBarry Smith         v4   -= 2;
10604c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10614c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10624c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
10634c1414c8SBarry Smith         sum4 -= v4[2] * tmp0 + v4[1] * tmp1;
10644c1414c8SBarry Smith       }
10654c1414c8SBarry Smith       if (j==1) {
10664c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10674c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10684c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10694c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
10704c1414c8SBarry Smith         sum4 -= *v4-- * tmp0;
10714c1414c8SBarry Smith       }
10724c1414c8SBarry Smith 
10734c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10744c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10754c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10764c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
10774c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10784c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10794c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
10804c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
10814c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
10824c1414c8SBarry Smith       x[*c--] = tmp[row] = sum4*a_a[ad[row]]; row--;
10834c1414c8SBarry Smith       break;
10844c1414c8SBarry Smith     case 5:
10854c1414c8SBarry Smith       sum1 = tmp[row];
10864c1414c8SBarry Smith       sum2 = tmp[row -1];
10874c1414c8SBarry Smith       sum3 = tmp[row -2];
10884c1414c8SBarry Smith       sum4 = tmp[row -3];
10894c1414c8SBarry Smith       sum5 = tmp[row -4];
10904c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10914c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10924c1414c8SBarry Smith       v4   = aa + ai[row -2]-1;
10934c1414c8SBarry Smith       v5   = aa + ai[row -3]-1;
10944c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10954c1414c8SBarry Smith         vi   -= 2;
10964c1414c8SBarry Smith         i0    = vi[2];
10974c1414c8SBarry Smith         i1    = vi[1];
10984c1414c8SBarry Smith         tmp0  = tmps[i0];
10994c1414c8SBarry Smith         tmp1  = tmps[i1];
11004c1414c8SBarry Smith         v1   -= 2;
11014c1414c8SBarry Smith         v2   -= 2;
11024c1414c8SBarry Smith         v3   -= 2;
11034c1414c8SBarry Smith         v4   -= 2;
11044c1414c8SBarry Smith         v5   -= 2;
11054c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
11064c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
11074c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
11084c1414c8SBarry Smith         sum4 -= v4[2] * tmp0 + v4[1] * tmp1;
11094c1414c8SBarry Smith         sum5 -= v5[2] * tmp0 + v5[1] * tmp1;
11104c1414c8SBarry Smith       }
11114c1414c8SBarry Smith       if (j==1) {
11124c1414c8SBarry Smith         tmp0  = tmps[*vi--];
11134c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
11144c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
11154c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
11164c1414c8SBarry Smith         sum4 -= *v4-- * tmp0;
11174c1414c8SBarry Smith         sum5 -= *v5-- * tmp0;
11184c1414c8SBarry Smith       }
11194c1414c8SBarry Smith 
11204c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
11214c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
11224c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11234c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11244c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11254c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
11264c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11274c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11284c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11294c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
11304c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11314c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11324c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum4*a_a[ad[row]]; row--;
11334c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11344c1414c8SBarry Smith       x[*c--] = tmp[row] = sum5*a_a[ad[row]]; row--;
11354c1414c8SBarry Smith       break;
11364c1414c8SBarry Smith     default:
1137546078acSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported ");
11384c1414c8SBarry Smith     }
11394c1414c8SBarry Smith   }
11404c1414c8SBarry Smith   ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr);
11414c1414c8SBarry Smith   ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr);
11423649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
1143fdc842d1SBarry Smith   ierr = VecRestoreArrayWrite(xx,&x);CHKERRQ(ierr);
1144dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz - A->cmap->n);CHKERRQ(ierr);
11454c1414c8SBarry Smith   PetscFunctionReturn(0);
11464c1414c8SBarry Smith }
11474c1414c8SBarry Smith 
11489a625307SHong Zhang PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode(Mat B,Mat A,const MatFactorInfo *info)
114928f1b45aSHong Zhang {
115028f1b45aSHong Zhang   Mat             C     =B;
115128f1b45aSHong Zhang   Mat_SeqAIJ      *a    =(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)C->data;
115228f1b45aSHong Zhang   IS              isrow = b->row,isicol = b->icol;
115328f1b45aSHong Zhang   PetscErrorCode  ierr;
115428f1b45aSHong Zhang   const PetscInt  *r,*ic,*ics;
115528f1b45aSHong Zhang   const PetscInt  n=A->rmap->n,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bdiag=b->diag;
115628f1b45aSHong Zhang   PetscInt        i,j,k,nz,nzL,row,*pj;
115728f1b45aSHong Zhang   const PetscInt  *ajtmp,*bjtmp;
11589877982aSShri Abhyankar   MatScalar       *pc,*pc1,*pc2,*pc3,*pc4,mul1,mul2,mul3,mul4,*pv,*rtmp1,*rtmp2,*rtmp3,*rtmp4;
11599877982aSShri Abhyankar   const MatScalar *aa=a->a,*v,*v1,*v2,*v3,*v4;
116028f1b45aSHong Zhang   FactorShiftCtx  sctx;
11614f81c4b7SBarry Smith   const PetscInt  *ddiag;
116228f1b45aSHong Zhang   PetscReal       rs;
116328f1b45aSHong Zhang   MatScalar       d;
11644f81c4b7SBarry Smith   PetscInt        inod,nodesz,node_max,col;
11654f81c4b7SBarry Smith   const PetscInt  *ns;
116607b50cabSHong Zhang   PetscInt        *tmp_vec1,*tmp_vec2,*nsmap;
11670e95ead3SHong Zhang 
116828f1b45aSHong Zhang   PetscFunctionBegin;
116928f1b45aSHong Zhang   /* MatPivotSetUp(): initialize shift context sctx */
117028f1b45aSHong Zhang   ierr = PetscMemzero(&sctx,sizeof(FactorShiftCtx));CHKERRQ(ierr);
117128f1b45aSHong Zhang 
1172f4db908eSBarry Smith   if (info->shifttype == (PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) { /* set sctx.shift_top=max{rs} */
117328f1b45aSHong Zhang     ddiag          = a->diag;
117428f1b45aSHong Zhang     sctx.shift_top = info->zeropivot;
117528f1b45aSHong Zhang     for (i=0; i<n; i++) {
117628f1b45aSHong Zhang       /* calculate sum(|aij|)-RealPart(aii), amt of shift needed for this row */
117728f1b45aSHong Zhang       d  = (aa)[ddiag[i]];
117828f1b45aSHong Zhang       rs = -PetscAbsScalar(d) - PetscRealPart(d);
117928f1b45aSHong Zhang       v  = aa+ai[i];
118028f1b45aSHong Zhang       nz = ai[i+1] - ai[i];
11812205254eSKarl Rupp       for (j=0; j<nz; j++) rs += PetscAbsScalar(v[j]);
118228f1b45aSHong Zhang       if (rs>sctx.shift_top) sctx.shift_top = rs;
118328f1b45aSHong Zhang     }
118428f1b45aSHong Zhang     sctx.shift_top *= 1.1;
118528f1b45aSHong Zhang     sctx.nshift_max = 5;
118628f1b45aSHong Zhang     sctx.shift_lo   = 0.;
118728f1b45aSHong Zhang     sctx.shift_hi   = 1.;
118828f1b45aSHong Zhang   }
118928f1b45aSHong Zhang 
119028f1b45aSHong Zhang   ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr);
119128f1b45aSHong Zhang   ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr);
119268785679SHong Zhang 
11931795a4d1SJed Brown   ierr  = PetscCalloc4(n,&rtmp1,n,&rtmp2,n,&rtmp3,n,&rtmp4);CHKERRQ(ierr);
119428f1b45aSHong Zhang   ics   = ic;
119528f1b45aSHong Zhang 
119628f1b45aSHong Zhang   node_max = a->inode.node_count;
119728f1b45aSHong Zhang   ns       = a->inode.size;
1198e7e72b3dSBarry Smith   if (!ns) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Matrix without inode information");
119928f1b45aSHong Zhang 
12009877982aSShri Abhyankar   /* If max inode size > 4, split it into two inodes.*/
120168785679SHong Zhang   /* also map the inode sizes according to the ordering */
1202854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tmp_vec1);CHKERRQ(ierr);
120368785679SHong Zhang   for (i=0,j=0; i<node_max; ++i,++j) {
1204b1550197SShri Abhyankar     if (ns[i] > 4) {
1205048b5e81SShri Abhyankar       tmp_vec1[j] = 4;
120668785679SHong Zhang       ++j;
120768785679SHong Zhang       tmp_vec1[j] = ns[i] - tmp_vec1[j-1];
120868785679SHong Zhang     } else {
120968785679SHong Zhang       tmp_vec1[j] = ns[i];
121068785679SHong Zhang     }
121168785679SHong Zhang   }
121268785679SHong Zhang   /* Use the correct node_max */
121368785679SHong Zhang   node_max = j;
121468785679SHong Zhang 
121568785679SHong Zhang   /* Now reorder the inode info based on mat re-ordering info */
121668785679SHong Zhang   /* First create a row -> inode_size_array_index map */
1217854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&nsmap);CHKERRQ(ierr);
1218854ce69bSBarry Smith   ierr = PetscMalloc1(node_max+1,&tmp_vec2);CHKERRQ(ierr);
121968785679SHong Zhang   for (i=0,row=0; i<node_max; i++) {
122068785679SHong Zhang     nodesz = tmp_vec1[i];
122168785679SHong Zhang     for (j=0; j<nodesz; j++,row++) {
122268785679SHong Zhang       nsmap[row] = i;
122368785679SHong Zhang     }
122468785679SHong Zhang   }
122568785679SHong Zhang   /* Using nsmap, create a reordered ns structure */
122668785679SHong Zhang   for (i=0,j=0; i< node_max; i++) {
122768785679SHong Zhang     nodesz      = tmp_vec1[nsmap[r[j]]];     /* here the reordered row_no is in r[] */
122868785679SHong Zhang     tmp_vec2[i] = nodesz;
122968785679SHong Zhang     j          += nodesz;
123068785679SHong Zhang   }
123168785679SHong Zhang   ierr = PetscFree(nsmap);CHKERRQ(ierr);
123268785679SHong Zhang   ierr = PetscFree(tmp_vec1);CHKERRQ(ierr);
1233b89f182dSHong Zhang 
123468785679SHong Zhang   /* Now use the correct ns */
123568785679SHong Zhang   ns = tmp_vec2;
123668785679SHong Zhang 
123728f1b45aSHong Zhang   do {
123807b50cabSHong Zhang     sctx.newshift = PETSC_FALSE;
123928f1b45aSHong Zhang     /* Now loop over each block-row, and do the factorization */
124028f1b45aSHong Zhang     for (inod=0,i=0; inod<node_max; inod++) { /* i: row index; inod: inode index */
124128f1b45aSHong Zhang       nodesz = ns[inod];
124228f1b45aSHong Zhang 
124328f1b45aSHong Zhang       switch (nodesz) {
124428f1b45aSHong Zhang       case 1:
124568785679SHong Zhang         /*----------*/
1246b89f182dSHong Zhang         /* zero rtmp1 */
124728f1b45aSHong Zhang         /* L part */
124828f1b45aSHong Zhang         nz    = bi[i+1] - bi[i];
124928f1b45aSHong Zhang         bjtmp = bj + bi[i];
1250b89f182dSHong Zhang         for (j=0; j<nz; j++) rtmp1[bjtmp[j]] = 0.0;
125128f1b45aSHong Zhang 
125228f1b45aSHong Zhang         /* U part */
125328f1b45aSHong Zhang         nz    = bdiag[i]-bdiag[i+1];
125428f1b45aSHong Zhang         bjtmp = bj + bdiag[i+1]+1;
1255b89f182dSHong Zhang         for (j=0; j<nz; j++) rtmp1[bjtmp[j]] = 0.0;
125628f1b45aSHong Zhang 
125728f1b45aSHong Zhang         /* load in initial (unfactored row) */
125828f1b45aSHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
125928f1b45aSHong Zhang         ajtmp = aj + ai[r[i]];
126028f1b45aSHong Zhang         v     = aa + ai[r[i]];
12612205254eSKarl Rupp         for (j=0; j<nz; j++) rtmp1[ics[ajtmp[j]]] = v[j];
12622205254eSKarl Rupp 
126328f1b45aSHong Zhang         /* ZeropivotApply() */
1264b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount;  /* shift the diagonal of the matrix */
126528f1b45aSHong Zhang 
126628f1b45aSHong Zhang         /* elimination */
126728f1b45aSHong Zhang         bjtmp = bj + bi[i];
126828f1b45aSHong Zhang         row   = *bjtmp++;
126928f1b45aSHong Zhang         nzL   = bi[i+1] - bi[i];
127028f1b45aSHong Zhang         for (k=0; k < nzL; k++) {
1271b89f182dSHong Zhang           pc = rtmp1 + row;
127228f1b45aSHong Zhang           if (*pc != 0.0) {
127328f1b45aSHong Zhang             pv   = b->a + bdiag[row];
1274b89f182dSHong Zhang             mul1 = *pc * (*pv);
1275b89f182dSHong Zhang             *pc  = mul1;
127628f1b45aSHong Zhang             pj   = b->j + bdiag[row+1]+1; /* beginning of U(row,:) */
127728f1b45aSHong Zhang             pv   = b->a + bdiag[row+1]+1;
127828f1b45aSHong Zhang             nz   = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
1279b89f182dSHong Zhang             for (j=0; j<nz; j++) rtmp1[pj[j]] -= mul1 * pv[j];
1280ca0c957dSBarry Smith             ierr = PetscLogFlops(1+2.0*nz);CHKERRQ(ierr);
128128f1b45aSHong Zhang           }
128228f1b45aSHong Zhang           row = *bjtmp++;
128328f1b45aSHong Zhang         }
128428f1b45aSHong Zhang 
128528f1b45aSHong Zhang         /* finished row so stick it into b->a */
128628f1b45aSHong Zhang         rs = 0.0;
128728f1b45aSHong Zhang         /* L part */
128828f1b45aSHong Zhang         pv = b->a + bi[i];
128928f1b45aSHong Zhang         pj = b->j + bi[i];
129028f1b45aSHong Zhang         nz = bi[i+1] - bi[i];
129128f1b45aSHong Zhang         for (j=0; j<nz; j++) {
1292b89f182dSHong Zhang           pv[j] = rtmp1[pj[j]]; rs += PetscAbsScalar(pv[j]);
129328f1b45aSHong Zhang         }
129428f1b45aSHong Zhang 
129528f1b45aSHong Zhang         /* U part */
129628f1b45aSHong Zhang         pv = b->a + bdiag[i+1]+1;
129728f1b45aSHong Zhang         pj = b->j + bdiag[i+1]+1;
129828f1b45aSHong Zhang         nz = bdiag[i] - bdiag[i+1]-1;
129928f1b45aSHong Zhang         for (j=0; j<nz; j++) {
1300b89f182dSHong Zhang           pv[j] = rtmp1[pj[j]]; rs += PetscAbsScalar(pv[j]);
130128f1b45aSHong Zhang         }
130228f1b45aSHong Zhang 
1303b89f182dSHong Zhang         /* Check zero pivot */
130428f1b45aSHong Zhang         sctx.rs = rs;
1305b89f182dSHong Zhang         sctx.pv = rtmp1[i];
13064cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
130707b50cabSHong Zhang         if (sctx.newshift) break;
130828f1b45aSHong Zhang 
1309a5b23f4aSJose E. Roman         /* Mark diagonal and invert diagonal for simpler triangular solves */
131028f1b45aSHong Zhang         pv  = b->a + bdiag[i];
1311b89f182dSHong Zhang         *pv = 1.0/sctx.pv; /* sctx.pv = rtmp1[i]+shiftamount if shifttype==MAT_SHIFT_INBLOCKS */
131228f1b45aSHong Zhang         break;
131328f1b45aSHong Zhang 
131428f1b45aSHong Zhang       case 2:
131528f1b45aSHong Zhang         /*----------*/
1316b89f182dSHong Zhang         /* zero rtmp1 and rtmp2 */
131728f1b45aSHong Zhang         /* L part */
131828f1b45aSHong Zhang         nz    = bi[i+1] - bi[i];
131928f1b45aSHong Zhang         bjtmp = bj + bi[i];
132028f1b45aSHong Zhang         for  (j=0; j<nz; j++) {
132168785679SHong Zhang           col        = bjtmp[j];
1322b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0;
132328f1b45aSHong Zhang         }
132428f1b45aSHong Zhang 
132528f1b45aSHong Zhang         /* U part */
132628f1b45aSHong Zhang         nz    = bdiag[i]-bdiag[i+1];
132728f1b45aSHong Zhang         bjtmp = bj + bdiag[i+1]+1;
132828f1b45aSHong Zhang         for  (j=0; j<nz; j++) {
132968785679SHong Zhang           col        = bjtmp[j];
1330b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0;
133128f1b45aSHong Zhang         }
133228f1b45aSHong Zhang 
133328f1b45aSHong Zhang         /* load in initial (unfactored row) */
133428f1b45aSHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
133528f1b45aSHong Zhang         ajtmp = aj + ai[r[i]];
133628f1b45aSHong Zhang         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1];
133728f1b45aSHong Zhang         for (j=0; j<nz; j++) {
133868785679SHong Zhang           col        = ics[ajtmp[j]];
1339b89f182dSHong Zhang           rtmp1[col] = v1[j]; rtmp2[col] = v2[j];
134028f1b45aSHong Zhang         }
134128f1b45aSHong Zhang         /* ZeropivotApply(): shift the diagonal of the matrix  */
1342b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount;
134328f1b45aSHong Zhang 
134428f1b45aSHong Zhang         /* elimination */
134528f1b45aSHong Zhang         bjtmp = bj + bi[i];
134628f1b45aSHong Zhang         row   = *bjtmp++; /* pivot row */
134728f1b45aSHong Zhang         nzL   = bi[i+1] - bi[i];
134828f1b45aSHong Zhang         for (k=0; k < nzL; k++) {
1349b89f182dSHong Zhang           pc1 = rtmp1 + row;
1350b89f182dSHong Zhang           pc2 = rtmp2 + row;
135128f1b45aSHong Zhang           if (*pc1 != 0.0 || *pc2 != 0.0) {
135228f1b45aSHong Zhang             pv   = b->a + bdiag[row];
1353b89f182dSHong Zhang             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv);
1354b89f182dSHong Zhang             *pc1 = mul1;       *pc2 = mul2;
135528f1b45aSHong Zhang 
135628f1b45aSHong Zhang             pj = b->j + bdiag[row+1]+1;     /* beginning of U(row,:) */
135728f1b45aSHong Zhang             pv = b->a + bdiag[row+1]+1;
135828f1b45aSHong Zhang             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
135928f1b45aSHong Zhang             for (j=0; j<nz; j++) {
136068785679SHong Zhang               col         = pj[j];
1361b89f182dSHong Zhang               rtmp1[col] -= mul1 * pv[j];
1362b89f182dSHong Zhang               rtmp2[col] -= mul2 * pv[j];
136328f1b45aSHong Zhang             }
1364ca0c957dSBarry Smith             ierr = PetscLogFlops(2+4.0*nz);CHKERRQ(ierr);
136528f1b45aSHong Zhang           }
136628f1b45aSHong Zhang           row = *bjtmp++;
136728f1b45aSHong Zhang         }
136828f1b45aSHong Zhang 
1369b89f182dSHong Zhang         /* finished row i; check zero pivot, then stick row i into b->a */
137028f1b45aSHong Zhang         rs = 0.0;
137128f1b45aSHong Zhang         /* L part */
1372b89f182dSHong Zhang         pc1 = b->a + bi[i];
137328f1b45aSHong Zhang         pj  = b->j + bi[i];
137428f1b45aSHong Zhang         nz  = bi[i+1] - bi[i];
137528f1b45aSHong Zhang         for (j=0; j<nz; j++) {
137668785679SHong Zhang           col    = pj[j];
13770e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
137828f1b45aSHong Zhang         }
137928f1b45aSHong Zhang         /* U part */
1380b89f182dSHong Zhang         pc1 = b->a + bdiag[i+1]+1;
138128f1b45aSHong Zhang         pj  = b->j + bdiag[i+1]+1;
13820e7a5c2bSHong Zhang         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
138328f1b45aSHong Zhang         for (j=0; j<nz; j++) {
138468785679SHong Zhang           col    = pj[j];
13850e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
138628f1b45aSHong Zhang         }
138728f1b45aSHong Zhang 
138828f1b45aSHong Zhang         sctx.rs = rs;
1389b89f182dSHong Zhang         sctx.pv = rtmp1[i];
13904cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
139107b50cabSHong Zhang         if (sctx.newshift) break;
1392b89f182dSHong Zhang         pc1  = b->a + bdiag[i]; /* Mark diagonal */
1393b89f182dSHong Zhang         *pc1 = 1.0/sctx.pv;
1394b89f182dSHong Zhang 
1395b89f182dSHong Zhang         /* Now take care of diagonal 2x2 block. */
1396b89f182dSHong Zhang         pc2 = rtmp2 + i;
1397b89f182dSHong Zhang         if (*pc2 != 0.0) {
1398b89f182dSHong Zhang           mul1 = (*pc2)*(*pc1); /* *pc1=diag[i] is inverted! */
1399b89f182dSHong Zhang           *pc2 = mul1;          /* insert L entry */
1400b89f182dSHong Zhang           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
1401b89f182dSHong Zhang           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
1402b89f182dSHong Zhang           for (j=0; j<nz; j++) {
1403b89f182dSHong Zhang             col = pj[j]; rtmp2[col] -= mul1 * rtmp1[col];
140428f1b45aSHong Zhang           }
1405ca0c957dSBarry Smith           ierr = PetscLogFlops(1+2.0*nz);CHKERRQ(ierr);
1406b89f182dSHong Zhang         }
1407b89f182dSHong Zhang 
1408b89f182dSHong Zhang         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
1409b89f182dSHong Zhang         rs = 0.0;
1410b89f182dSHong Zhang         /* L part */
1411b89f182dSHong Zhang         pc2 = b->a + bi[i+1];
1412b89f182dSHong Zhang         pj  = b->j + bi[i+1];
1413b89f182dSHong Zhang         nz  = bi[i+2] - bi[i+1];
1414b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1415b89f182dSHong Zhang           col    = pj[j];
14160e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1417b89f182dSHong Zhang         }
1418b89f182dSHong Zhang         /* U part */
1419b89f182dSHong Zhang         pc2 = b->a + bdiag[i+2]+1;
14200e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+2]+1;
14210e7a5c2bSHong Zhang         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
1422b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1423b89f182dSHong Zhang           col    = pj[j];
14240e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1425b89f182dSHong Zhang         }
1426b89f182dSHong Zhang 
142728f1b45aSHong Zhang         sctx.rs = rs;
1428b89f182dSHong Zhang         sctx.pv = rtmp2[i+1];
14294cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+1);CHKERRQ(ierr);
143007b50cabSHong Zhang         if (sctx.newshift) break;
143128f1b45aSHong Zhang         pc2  = b->a + bdiag[i+1];
1432b89f182dSHong Zhang         *pc2 = 1.0/sctx.pv;
143328f1b45aSHong Zhang         break;
1434b89f182dSHong Zhang 
143568785679SHong Zhang       case 3:
143668785679SHong Zhang         /*----------*/
143768785679SHong Zhang         /* zero rtmp */
143868785679SHong Zhang         /* L part */
143968785679SHong Zhang         nz    = bi[i+1] - bi[i];
144068785679SHong Zhang         bjtmp = bj + bi[i];
144168785679SHong Zhang         for  (j=0; j<nz; j++) {
144268785679SHong Zhang           col        = bjtmp[j];
1443b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;
144468785679SHong Zhang         }
144568785679SHong Zhang 
144668785679SHong Zhang         /* U part */
144768785679SHong Zhang         nz    = bdiag[i]-bdiag[i+1];
144868785679SHong Zhang         bjtmp = bj + bdiag[i+1]+1;
144968785679SHong Zhang         for  (j=0; j<nz; j++) {
145068785679SHong Zhang           col        = bjtmp[j];
1451b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;
145268785679SHong Zhang         }
145368785679SHong Zhang 
145468785679SHong Zhang         /* load in initial (unfactored row) */
145568785679SHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
145668785679SHong Zhang         ajtmp = aj + ai[r[i]];
145768785679SHong Zhang         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1]; v3 = aa + ai[r[i]+2];
145868785679SHong Zhang         for (j=0; j<nz; j++) {
145968785679SHong Zhang           col        = ics[ajtmp[j]];
1460b89f182dSHong Zhang           rtmp1[col] = v1[j]; rtmp2[col] = v2[j]; rtmp3[col] = v3[j];
146168785679SHong Zhang         }
146268785679SHong Zhang         /* ZeropivotApply(): shift the diagonal of the matrix  */
1463b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount; rtmp3[i+2] += sctx.shift_amount;
146468785679SHong Zhang 
146568785679SHong Zhang         /* elimination */
146668785679SHong Zhang         bjtmp = bj + bi[i];
146768785679SHong Zhang         row   = *bjtmp++; /* pivot row */
146868785679SHong Zhang         nzL   = bi[i+1] - bi[i];
146968785679SHong Zhang         for (k=0; k < nzL; k++) {
1470b89f182dSHong Zhang           pc1 = rtmp1 + row;
1471b89f182dSHong Zhang           pc2 = rtmp2 + row;
1472b89f182dSHong Zhang           pc3 = rtmp3 + row;
147368785679SHong Zhang           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 != 0.0) {
147468785679SHong Zhang             pv   = b->a + bdiag[row];
1475b89f182dSHong Zhang             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv); mul3 = *pc3*(*pv);
1476b89f182dSHong Zhang             *pc1 = mul1; *pc2 = mul2; *pc3 = mul3;
147768785679SHong Zhang 
147868785679SHong Zhang             pj = b->j + bdiag[row+1]+1;     /* beginning of U(row,:) */
147968785679SHong Zhang             pv = b->a + bdiag[row+1]+1;
148068785679SHong Zhang             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
148168785679SHong Zhang             for (j=0; j<nz; j++) {
148268785679SHong Zhang               col         = pj[j];
1483b89f182dSHong Zhang               rtmp1[col] -= mul1 * pv[j];
1484b89f182dSHong Zhang               rtmp2[col] -= mul2 * pv[j];
1485b89f182dSHong Zhang               rtmp3[col] -= mul3 * pv[j];
148668785679SHong Zhang             }
1487ca0c957dSBarry Smith             ierr = PetscLogFlops(3+6.0*nz);CHKERRQ(ierr);
148868785679SHong Zhang           }
148968785679SHong Zhang           row = *bjtmp++;
149068785679SHong Zhang         }
149168785679SHong Zhang 
1492b89f182dSHong Zhang         /* finished row i; check zero pivot, then stick row i into b->a */
1493b89f182dSHong Zhang         rs = 0.0;
1494b89f182dSHong Zhang         /* L part */
1495b89f182dSHong Zhang         pc1 = b->a + bi[i];
1496b89f182dSHong Zhang         pj  = b->j + bi[i];
1497b89f182dSHong Zhang         nz  = bi[i+1] - bi[i];
1498b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1499b89f182dSHong Zhang           col    = pj[j];
15000e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
1501b89f182dSHong Zhang         }
1502b89f182dSHong Zhang         /* U part */
1503b89f182dSHong Zhang         pc1 = b->a + bdiag[i+1]+1;
1504b89f182dSHong Zhang         pj  = b->j + bdiag[i+1]+1;
15050e7a5c2bSHong Zhang         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
1506b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1507b89f182dSHong Zhang           col    = pj[j];
15080e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
1509b89f182dSHong Zhang         }
151068785679SHong Zhang 
1511b89f182dSHong Zhang         sctx.rs = rs;
1512b89f182dSHong Zhang         sctx.pv = rtmp1[i];
15134cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
151407b50cabSHong Zhang         if (sctx.newshift) break;
1515b89f182dSHong Zhang         pc1  = b->a + bdiag[i]; /* Mark diag[i] */
1516b89f182dSHong Zhang         *pc1 = 1.0/sctx.pv;
1517b89f182dSHong Zhang 
1518b89f182dSHong Zhang         /* Now take care of 1st column of diagonal 3x3 block. */
1519b89f182dSHong Zhang         pc2 = rtmp2 + i;
1520b89f182dSHong Zhang         pc3 = rtmp3 + i;
1521b89f182dSHong Zhang         if (*pc2 != 0.0 || *pc3 != 0.0) {
1522b89f182dSHong Zhang           mul2 = (*pc2)*(*pc1); *pc2 = mul2;
1523b89f182dSHong Zhang           mul3 = (*pc3)*(*pc1); *pc3 = mul3;
152468785679SHong Zhang           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
152568785679SHong Zhang           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
152668785679SHong Zhang           for (j=0; j<nz; j++) {
152768785679SHong Zhang             col         = pj[j];
1528b89f182dSHong Zhang             rtmp2[col] -= mul2 * rtmp1[col];
1529b89f182dSHong Zhang             rtmp3[col] -= mul3 * rtmp1[col];
153068785679SHong Zhang           }
1531ca0c957dSBarry Smith           ierr = PetscLogFlops(2+4.0*nz);CHKERRQ(ierr);
153268785679SHong Zhang         }
153368785679SHong Zhang 
1534b89f182dSHong Zhang         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
1535b89f182dSHong Zhang         rs = 0.0;
1536b89f182dSHong Zhang         /* L part */
1537b89f182dSHong Zhang         pc2 = b->a + bi[i+1];
1538b89f182dSHong Zhang         pj  = b->j + bi[i+1];
1539b89f182dSHong Zhang         nz  = bi[i+2] - bi[i+1];
1540b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1541b89f182dSHong Zhang           col    = pj[j];
15420e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1543b89f182dSHong Zhang         }
1544b89f182dSHong Zhang         /* U part */
1545b89f182dSHong Zhang         pc2 = b->a + bdiag[i+2]+1;
15460e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+2]+1;
15470e7a5c2bSHong Zhang         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
1548b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1549b89f182dSHong Zhang           col    = pj[j];
15500e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1551b89f182dSHong Zhang         }
1552b89f182dSHong Zhang 
1553b89f182dSHong Zhang         sctx.rs = rs;
1554b89f182dSHong Zhang         sctx.pv = rtmp2[i+1];
15554cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+1);CHKERRQ(ierr);
155607b50cabSHong Zhang         if (sctx.newshift) break;
1557b89f182dSHong Zhang         pc2  = b->a + bdiag[i+1];
1558b89f182dSHong Zhang         *pc2 = 1.0/sctx.pv; /* Mark diag[i+1] */
1559b89f182dSHong Zhang 
1560b89f182dSHong Zhang         /* Now take care of 2nd column of diagonal 3x3 block. */
1561b89f182dSHong Zhang         pc3 = rtmp3 + i+1;
156268785679SHong Zhang         if (*pc3 != 0.0) {
1563b89f182dSHong Zhang           mul3 = (*pc3)*(*pc2); *pc3 = mul3;
156468785679SHong Zhang           pj   = b->j + bdiag[i+2]+1;     /* beginning of U(i+1,:) */
156568785679SHong Zhang           nz   = bdiag[i+1]-bdiag[i+2]-1; /* num of entries in U(i+1,:) excluding diag */
156668785679SHong Zhang           for (j=0; j<nz; j++) {
156768785679SHong Zhang             col         = pj[j];
1568b89f182dSHong Zhang             rtmp3[col] -= mul3 * rtmp2[col];
156968785679SHong Zhang           }
1570ca0c957dSBarry Smith           ierr = PetscLogFlops(1+2.0*nz);CHKERRQ(ierr);
157168785679SHong Zhang         }
157268785679SHong Zhang 
1573b89f182dSHong Zhang         /* finished i+2; check zero pivot, then stick row i+2 into b->a */
157468785679SHong Zhang         rs = 0.0;
157568785679SHong Zhang         /* L part */
1576b89f182dSHong Zhang         pc3 = b->a + bi[i+2];
1577b89f182dSHong Zhang         pj  = b->j + bi[i+2];
1578b89f182dSHong Zhang         nz  = bi[i+3] - bi[i+2];
157968785679SHong Zhang         for (j=0; j<nz; j++) {
158068785679SHong Zhang           col    = pj[j];
15810e7a5c2bSHong Zhang           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
158268785679SHong Zhang         }
158368785679SHong Zhang         /* U part */
1584b89f182dSHong Zhang         pc3 = b->a + bdiag[i+3]+1;
15850e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+3]+1;
15860e7a5c2bSHong Zhang         nz  = bdiag[i+2] - bdiag[i+3] - 1; /* exclude diagonal */
158768785679SHong Zhang         for (j=0; j<nz; j++) {
158868785679SHong Zhang           col    = pj[j];
15890e7a5c2bSHong Zhang           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
159068785679SHong Zhang         }
159168785679SHong Zhang 
159268785679SHong Zhang         sctx.rs = rs;
1593b89f182dSHong Zhang         sctx.pv = rtmp3[i+2];
15944cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+2);CHKERRQ(ierr);
159507b50cabSHong Zhang         if (sctx.newshift) break;
159668785679SHong Zhang         pc3  = b->a + bdiag[i+2];
1597b89f182dSHong Zhang         *pc3 = 1.0/sctx.pv; /* Mark diag[i+2] */
159868785679SHong Zhang         break;
15999877982aSShri Abhyankar       case 4:
16009877982aSShri Abhyankar         /*----------*/
16019877982aSShri Abhyankar         /* zero rtmp */
16029877982aSShri Abhyankar         /* L part */
16039877982aSShri Abhyankar         nz    = bi[i+1] - bi[i];
16049877982aSShri Abhyankar         bjtmp = bj + bi[i];
16059877982aSShri Abhyankar         for  (j=0; j<nz; j++) {
16069877982aSShri Abhyankar           col        = bjtmp[j];
16079877982aSShri Abhyankar           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;rtmp4[col] = 0.0;
16089877982aSShri Abhyankar         }
16099877982aSShri Abhyankar 
16109877982aSShri Abhyankar         /* U part */
16119877982aSShri Abhyankar         nz    = bdiag[i]-bdiag[i+1];
16129877982aSShri Abhyankar         bjtmp = bj + bdiag[i+1]+1;
16139877982aSShri Abhyankar         for  (j=0; j<nz; j++) {
16149877982aSShri Abhyankar           col        = bjtmp[j];
16159877982aSShri Abhyankar           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0; rtmp4[col] = 0.0;
16169877982aSShri Abhyankar         }
16179877982aSShri Abhyankar 
16189877982aSShri Abhyankar         /* load in initial (unfactored row) */
16199877982aSShri Abhyankar         nz    = ai[r[i]+1] - ai[r[i]];
16209877982aSShri Abhyankar         ajtmp = aj + ai[r[i]];
16219877982aSShri Abhyankar         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1]; v3 = aa + ai[r[i]+2]; v4 = aa + ai[r[i]+3];
16229877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16239877982aSShri Abhyankar           col        = ics[ajtmp[j]];
16249877982aSShri Abhyankar           rtmp1[col] = v1[j]; rtmp2[col] = v2[j]; rtmp3[col] = v3[j]; rtmp4[col] = v4[j];
16259877982aSShri Abhyankar         }
16269877982aSShri Abhyankar         /* ZeropivotApply(): shift the diagonal of the matrix  */
16279877982aSShri Abhyankar         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount; rtmp3[i+2] += sctx.shift_amount; rtmp4[i+3] += sctx.shift_amount;
16289877982aSShri Abhyankar 
16299877982aSShri Abhyankar         /* elimination */
16309877982aSShri Abhyankar         bjtmp = bj + bi[i];
16319877982aSShri Abhyankar         row   = *bjtmp++; /* pivot row */
16329877982aSShri Abhyankar         nzL   = bi[i+1] - bi[i];
16339877982aSShri Abhyankar         for (k=0; k < nzL; k++) {
16349877982aSShri Abhyankar           pc1 = rtmp1 + row;
16359877982aSShri Abhyankar           pc2 = rtmp2 + row;
16369877982aSShri Abhyankar           pc3 = rtmp3 + row;
16379877982aSShri Abhyankar           pc4 = rtmp4 + row;
16389877982aSShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 != 0.0 || *pc4 != 0.0) {
16399877982aSShri Abhyankar             pv   = b->a + bdiag[row];
16409877982aSShri Abhyankar             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv); mul3 = *pc3*(*pv); mul4 = *pc4*(*pv);
16419877982aSShri Abhyankar             *pc1 = mul1; *pc2 = mul2; *pc3 = mul3; *pc4 = mul4;
16429877982aSShri Abhyankar 
16439877982aSShri Abhyankar             pj = b->j + bdiag[row+1]+1; /* beginning of U(row,:) */
16449877982aSShri Abhyankar             pv = b->a + bdiag[row+1]+1;
16459877982aSShri Abhyankar             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
16469877982aSShri Abhyankar             for (j=0; j<nz; j++) {
16479877982aSShri Abhyankar               col         = pj[j];
16489877982aSShri Abhyankar               rtmp1[col] -= mul1 * pv[j];
16499877982aSShri Abhyankar               rtmp2[col] -= mul2 * pv[j];
16509877982aSShri Abhyankar               rtmp3[col] -= mul3 * pv[j];
16519877982aSShri Abhyankar               rtmp4[col] -= mul4 * pv[j];
16529877982aSShri Abhyankar             }
1653ca0c957dSBarry Smith             ierr = PetscLogFlops(4+8.0*nz);CHKERRQ(ierr);
16549877982aSShri Abhyankar           }
16559877982aSShri Abhyankar           row = *bjtmp++;
16569877982aSShri Abhyankar         }
16579877982aSShri Abhyankar 
16589877982aSShri Abhyankar         /* finished row i; check zero pivot, then stick row i into b->a */
16599877982aSShri Abhyankar         rs = 0.0;
16609877982aSShri Abhyankar         /* L part */
16619877982aSShri Abhyankar         pc1 = b->a + bi[i];
16629877982aSShri Abhyankar         pj  = b->j + bi[i];
16639877982aSShri Abhyankar         nz  = bi[i+1] - bi[i];
16649877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16659877982aSShri Abhyankar           col    = pj[j];
16669877982aSShri Abhyankar           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
16679877982aSShri Abhyankar         }
16689877982aSShri Abhyankar         /* U part */
16699877982aSShri Abhyankar         pc1 = b->a + bdiag[i+1]+1;
16709877982aSShri Abhyankar         pj  = b->j + bdiag[i+1]+1;
16719877982aSShri Abhyankar         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
16729877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16739877982aSShri Abhyankar           col    = pj[j];
16749877982aSShri Abhyankar           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
16759877982aSShri Abhyankar         }
16769877982aSShri Abhyankar 
16779877982aSShri Abhyankar         sctx.rs = rs;
16789877982aSShri Abhyankar         sctx.pv = rtmp1[i];
16794cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i);CHKERRQ(ierr);
168007b50cabSHong Zhang         if (sctx.newshift) break;
16819877982aSShri Abhyankar         pc1  = b->a + bdiag[i]; /* Mark diag[i] */
16829877982aSShri Abhyankar         *pc1 = 1.0/sctx.pv;
16839877982aSShri Abhyankar 
16849877982aSShri Abhyankar         /* Now take care of 1st column of diagonal 4x4 block. */
16859877982aSShri Abhyankar         pc2 = rtmp2 + i;
16869877982aSShri Abhyankar         pc3 = rtmp3 + i;
16879877982aSShri Abhyankar         pc4 = rtmp4 + i;
16889877982aSShri Abhyankar         if (*pc2 != 0.0 || *pc3 != 0.0 || *pc4 != 0.0) {
16899877982aSShri Abhyankar           mul2 = (*pc2)*(*pc1); *pc2 = mul2;
16909877982aSShri Abhyankar           mul3 = (*pc3)*(*pc1); *pc3 = mul3;
16919877982aSShri Abhyankar           mul4 = (*pc4)*(*pc1); *pc4 = mul4;
16929877982aSShri Abhyankar           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
16939877982aSShri Abhyankar           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
16949877982aSShri Abhyankar           for (j=0; j<nz; j++) {
16959877982aSShri Abhyankar             col         = pj[j];
16969877982aSShri Abhyankar             rtmp2[col] -= mul2 * rtmp1[col];
16979877982aSShri Abhyankar             rtmp3[col] -= mul3 * rtmp1[col];
16989877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp1[col];
16999877982aSShri Abhyankar           }
1700ca0c957dSBarry Smith           ierr = PetscLogFlops(3+6.0*nz);CHKERRQ(ierr);
17019877982aSShri Abhyankar         }
17029877982aSShri Abhyankar 
17039877982aSShri Abhyankar         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
17049877982aSShri Abhyankar         rs = 0.0;
17059877982aSShri Abhyankar         /* L part */
17069877982aSShri Abhyankar         pc2 = b->a + bi[i+1];
17079877982aSShri Abhyankar         pj  = b->j + bi[i+1];
17089877982aSShri Abhyankar         nz  = bi[i+2] - bi[i+1];
17099877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17109877982aSShri Abhyankar           col    = pj[j];
17119877982aSShri Abhyankar           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
17129877982aSShri Abhyankar         }
17139877982aSShri Abhyankar         /* U part */
17149877982aSShri Abhyankar         pc2 = b->a + bdiag[i+2]+1;
17159877982aSShri Abhyankar         pj  = b->j + bdiag[i+2]+1;
17169877982aSShri Abhyankar         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
17179877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17189877982aSShri Abhyankar           col    = pj[j];
17199877982aSShri Abhyankar           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
17209877982aSShri Abhyankar         }
17219877982aSShri Abhyankar 
17229877982aSShri Abhyankar         sctx.rs = rs;
17239877982aSShri Abhyankar         sctx.pv = rtmp2[i+1];
17244cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+1);CHKERRQ(ierr);
172507b50cabSHong Zhang         if (sctx.newshift) break;
17269877982aSShri Abhyankar         pc2  = b->a + bdiag[i+1];
17279877982aSShri Abhyankar         *pc2 = 1.0/sctx.pv; /* Mark diag[i+1] */
17289877982aSShri Abhyankar 
17299877982aSShri Abhyankar         /* Now take care of 2nd column of diagonal 4x4 block. */
17309877982aSShri Abhyankar         pc3 = rtmp3 + i+1;
17319877982aSShri Abhyankar         pc4 = rtmp4 + i+1;
17329877982aSShri Abhyankar         if (*pc3 != 0.0 || *pc4 != 0.0) {
17339877982aSShri Abhyankar           mul3 = (*pc3)*(*pc2); *pc3 = mul3;
17349877982aSShri Abhyankar           mul4 = (*pc4)*(*pc2); *pc4 = mul4;
17359877982aSShri Abhyankar           pj   = b->j + bdiag[i+2]+1;     /* beginning of U(i+1,:) */
17369877982aSShri Abhyankar           nz   = bdiag[i+1]-bdiag[i+2]-1; /* num of entries in U(i+1,:) excluding diag */
17379877982aSShri Abhyankar           for (j=0; j<nz; j++) {
17389877982aSShri Abhyankar             col         = pj[j];
17399877982aSShri Abhyankar             rtmp3[col] -= mul3 * rtmp2[col];
17409877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp2[col];
17419877982aSShri Abhyankar           }
1742ca0c957dSBarry Smith           ierr = PetscLogFlops(4.0*nz);CHKERRQ(ierr);
17439877982aSShri Abhyankar         }
17449877982aSShri Abhyankar 
17459877982aSShri Abhyankar         /* finished i+2; check zero pivot, then stick row i+2 into b->a */
17469877982aSShri Abhyankar         rs = 0.0;
17479877982aSShri Abhyankar         /* L part */
17489877982aSShri Abhyankar         pc3 = b->a + bi[i+2];
17499877982aSShri Abhyankar         pj  = b->j + bi[i+2];
17509877982aSShri Abhyankar         nz  = bi[i+3] - bi[i+2];
17519877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17529877982aSShri Abhyankar           col    = pj[j];
17539877982aSShri Abhyankar           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
17549877982aSShri Abhyankar         }
17559877982aSShri Abhyankar         /* U part */
17569877982aSShri Abhyankar         pc3 = b->a + bdiag[i+3]+1;
17579877982aSShri Abhyankar         pj  = b->j + bdiag[i+3]+1;
17589877982aSShri Abhyankar         nz  = bdiag[i+2] - bdiag[i+3] - 1; /* exclude diagonal */
17599877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17609877982aSShri Abhyankar           col    = pj[j];
17619877982aSShri Abhyankar           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
17629877982aSShri Abhyankar         }
17639877982aSShri Abhyankar 
17649877982aSShri Abhyankar         sctx.rs = rs;
17659877982aSShri Abhyankar         sctx.pv = rtmp3[i+2];
17664cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+2);CHKERRQ(ierr);
176707b50cabSHong Zhang         if (sctx.newshift) break;
17689877982aSShri Abhyankar         pc3  = b->a + bdiag[i+2];
17699877982aSShri Abhyankar         *pc3 = 1.0/sctx.pv; /* Mark diag[i+2] */
17709877982aSShri Abhyankar 
17719877982aSShri Abhyankar         /* Now take care of 3rd column of diagonal 4x4 block. */
17729877982aSShri Abhyankar         pc4 = rtmp4 + i+2;
17739877982aSShri Abhyankar         if (*pc4 != 0.0) {
17749877982aSShri Abhyankar           mul4 = (*pc4)*(*pc3); *pc4 = mul4;
17759877982aSShri Abhyankar           pj   = b->j + bdiag[i+3]+1;     /* beginning of U(i+2,:) */
17769877982aSShri Abhyankar           nz   = bdiag[i+2]-bdiag[i+3]-1; /* num of entries in U(i+2,:) excluding diag */
17779877982aSShri Abhyankar           for (j=0; j<nz; j++) {
17789877982aSShri Abhyankar             col         = pj[j];
17799877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp3[col];
17809877982aSShri Abhyankar           }
1781ca0c957dSBarry Smith           ierr = PetscLogFlops(1+2.0*nz);CHKERRQ(ierr);
17829877982aSShri Abhyankar         }
17839877982aSShri Abhyankar 
17849877982aSShri Abhyankar         /* finished i+3; check zero pivot, then stick row i+3 into b->a */
17859877982aSShri Abhyankar         rs = 0.0;
17869877982aSShri Abhyankar         /* L part */
17879877982aSShri Abhyankar         pc4 = b->a + bi[i+3];
17889877982aSShri Abhyankar         pj  = b->j + bi[i+3];
17899877982aSShri Abhyankar         nz  = bi[i+4] - bi[i+3];
17909877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17919877982aSShri Abhyankar           col    = pj[j];
17929877982aSShri Abhyankar           pc4[j] = rtmp4[col]; rs += PetscAbsScalar(pc4[j]);
17939877982aSShri Abhyankar         }
17949877982aSShri Abhyankar         /* U part */
17959877982aSShri Abhyankar         pc4 = b->a + bdiag[i+4]+1;
17969877982aSShri Abhyankar         pj  = b->j + bdiag[i+4]+1;
17979877982aSShri Abhyankar         nz  = bdiag[i+3] - bdiag[i+4] - 1; /* exclude diagonal */
17989877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17999877982aSShri Abhyankar           col    = pj[j];
18009877982aSShri Abhyankar           pc4[j] = rtmp4[col]; rs += PetscAbsScalar(pc4[j]);
18019877982aSShri Abhyankar         }
18029877982aSShri Abhyankar 
18039877982aSShri Abhyankar         sctx.rs = rs;
18049877982aSShri Abhyankar         sctx.pv = rtmp4[i+3];
18054cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,i+3);CHKERRQ(ierr);
180607b50cabSHong Zhang         if (sctx.newshift) break;
18079877982aSShri Abhyankar         pc4  = b->a + bdiag[i+3];
18089877982aSShri Abhyankar         *pc4 = 1.0/sctx.pv; /* Mark diag[i+3] */
18099877982aSShri Abhyankar         break;
181068785679SHong Zhang 
181128f1b45aSHong Zhang       default:
1812546078acSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Node size not yet supported ");
181328f1b45aSHong Zhang       }
1814c2b86aeeSHong Zhang       if (sctx.newshift) break; /* break for (inod=0,i=0; inod<node_max; inod++) */
181528f1b45aSHong Zhang       i += nodesz;                 /* Update the row */
181668785679SHong Zhang     }
181728f1b45aSHong Zhang 
181828f1b45aSHong Zhang     /* MatPivotRefine() */
181907b50cabSHong Zhang     if (info->shifttype == (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE && !sctx.newshift && sctx.shift_fraction>0 && sctx.nshift<sctx.nshift_max) {
182028f1b45aSHong Zhang       /*
182128f1b45aSHong Zhang        * if no shift in this attempt & shifting & started shifting & can refine,
182228f1b45aSHong Zhang        * then try lower shift
182328f1b45aSHong Zhang        */
182428f1b45aSHong Zhang       sctx.shift_hi       = sctx.shift_fraction;
182528f1b45aSHong Zhang       sctx.shift_fraction = (sctx.shift_hi+sctx.shift_lo)/2.;
182628f1b45aSHong Zhang       sctx.shift_amount   = sctx.shift_fraction * sctx.shift_top;
182707b50cabSHong Zhang       sctx.newshift       = PETSC_TRUE;
182828f1b45aSHong Zhang       sctx.nshift++;
182928f1b45aSHong Zhang     }
183007b50cabSHong Zhang   } while (sctx.newshift);
183128f1b45aSHong Zhang 
1832eb9baa12SBarry Smith   ierr = PetscFree4(rtmp1,rtmp2,rtmp3,rtmp4);CHKERRQ(ierr);
183368785679SHong Zhang   ierr = PetscFree(tmp_vec2);CHKERRQ(ierr);
183428f1b45aSHong Zhang   ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr);
183528f1b45aSHong Zhang   ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr);
183628f1b45aSHong Zhang 
1837abb87a52SBarry Smith   if (b->inode.size) {
1838abb87a52SBarry Smith     C->ops->solve           = MatSolve_SeqAIJ_Inode;
1839abb87a52SBarry Smith   } else {
1840d3ac4fa3SBarry Smith     C->ops->solve           = MatSolve_SeqAIJ;
1841abb87a52SBarry Smith   }
184228f1b45aSHong Zhang   C->ops->solveadd          = MatSolveAdd_SeqAIJ;
184328f1b45aSHong Zhang   C->ops->solvetranspose    = MatSolveTranspose_SeqAIJ;
184428f1b45aSHong Zhang   C->ops->solvetransposeadd = MatSolveTransposeAdd_SeqAIJ;
184528f1b45aSHong Zhang   C->ops->matsolve          = MatMatSolve_SeqAIJ;
184628f1b45aSHong Zhang   C->assembled              = PETSC_TRUE;
184728f1b45aSHong Zhang   C->preallocated           = PETSC_TRUE;
18482205254eSKarl Rupp 
184928f1b45aSHong Zhang   ierr = PetscLogFlops(C->cmap->n);CHKERRQ(ierr);
185028f1b45aSHong Zhang 
185128f1b45aSHong Zhang   /* MatShiftView(A,info,&sctx) */
185228f1b45aSHong Zhang   if (sctx.nshift) {
1853f4db908eSBarry Smith     if (info->shifttype == (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE) {
1854c0aa6a63SJacob Faibussowitsch       ierr = PetscInfo4(A,"number of shift_pd tries %" PetscInt_FMT ", shift_amount %g, diagonal shifted up by %e fraction top_value %e\n",sctx.nshift,(double)sctx.shift_amount,(double)sctx.shift_fraction,(double)sctx.shift_top);CHKERRQ(ierr);
1855f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_NONZERO) {
1856c0aa6a63SJacob Faibussowitsch       ierr = PetscInfo2(A,"number of shift_nz tries %" PetscInt_FMT ", shift_amount %g\n",sctx.nshift,(double)sctx.shift_amount);CHKERRQ(ierr);
1857f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_INBLOCKS) {
1858c0aa6a63SJacob Faibussowitsch       ierr = PetscInfo2(A,"number of shift_inblocks applied %" PetscInt_FMT ", each shift_amount %g\n",sctx.nshift,(double)info->shiftamount);CHKERRQ(ierr);
185928f1b45aSHong Zhang     }
186028f1b45aSHong Zhang   }
186128f1b45aSHong Zhang   PetscFunctionReturn(0);
186228f1b45aSHong Zhang }
1863628f99d7SShri Abhyankar 
18649a625307SHong Zhang PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode_inplace(Mat B,Mat A,const MatFactorInfo *info)
1865628f99d7SShri Abhyankar {
1866628f99d7SShri Abhyankar   Mat             C     = B;
1867628f99d7SShri Abhyankar   Mat_SeqAIJ      *a    = (Mat_SeqAIJ*)A->data,*b = (Mat_SeqAIJ*)C->data;
1868628f99d7SShri Abhyankar   IS              iscol = b->col,isrow = b->row,isicol = b->icol;
1869628f99d7SShri Abhyankar   PetscErrorCode  ierr;
1870628f99d7SShri Abhyankar   const PetscInt  *r,*ic,*c,*ics;
1871628f99d7SShri Abhyankar   PetscInt        n   = A->rmap->n,*bi = b->i;
1872628f99d7SShri Abhyankar   PetscInt        *bj = b->j,*nbj=b->j +1,*ajtmp,*bjtmp,nz,nz_tmp,row,prow;
18738758e1faSBarry Smith   PetscInt        i,j,idx,*bd = b->diag,node_max,nodesz;
18748758e1faSBarry Smith   PetscInt        *ai = a->i,*aj = a->j;
1875628f99d7SShri Abhyankar   PetscInt        *ns,*tmp_vec1,*tmp_vec2,*nsmap,*pj;
1876628f99d7SShri Abhyankar   PetscScalar     mul1,mul2,mul3,tmp;
1877628f99d7SShri Abhyankar   MatScalar       *pc1,*pc2,*pc3,*ba = b->a,*pv,*rtmp11,*rtmp22,*rtmp33;
1878628f99d7SShri Abhyankar   const MatScalar *v1,*v2,*v3,*aa = a->a,*rtmp1;
1879628f99d7SShri Abhyankar   PetscReal       rs=0.0;
1880628f99d7SShri Abhyankar   FactorShiftCtx  sctx;
1881628f99d7SShri Abhyankar 
1882628f99d7SShri Abhyankar   PetscFunctionBegin;
1883628f99d7SShri Abhyankar   sctx.shift_top      = 0;
1884628f99d7SShri Abhyankar   sctx.nshift_max     = 0;
1885628f99d7SShri Abhyankar   sctx.shift_lo       = 0;
1886628f99d7SShri Abhyankar   sctx.shift_hi       = 0;
1887628f99d7SShri Abhyankar   sctx.shift_fraction = 0;
1888628f99d7SShri Abhyankar 
1889628f99d7SShri Abhyankar   /* if both shift schemes are chosen by user, only use info->shiftpd */
1890f4db908eSBarry Smith   if (info->shifttype==(PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) { /* set sctx.shift_top=max{rs} */
1891628f99d7SShri Abhyankar     sctx.shift_top = 0;
1892628f99d7SShri Abhyankar     for (i=0; i<n; i++) {
1893628f99d7SShri Abhyankar       /* calculate rs = sum(|aij|)-RealPart(aii), amt of shift needed for this row */
1894628f99d7SShri Abhyankar       rs    = 0.0;
1895628f99d7SShri Abhyankar       ajtmp = aj + ai[i];
1896628f99d7SShri Abhyankar       rtmp1 = aa + ai[i];
1897628f99d7SShri Abhyankar       nz    = ai[i+1] - ai[i];
1898628f99d7SShri Abhyankar       for (j=0; j<nz; j++) {
1899628f99d7SShri Abhyankar         if (*ajtmp != i) {
1900628f99d7SShri Abhyankar           rs += PetscAbsScalar(*rtmp1++);
1901628f99d7SShri Abhyankar         } else {
1902628f99d7SShri Abhyankar           rs -= PetscRealPart(*rtmp1++);
1903628f99d7SShri Abhyankar         }
1904628f99d7SShri Abhyankar         ajtmp++;
1905628f99d7SShri Abhyankar       }
1906628f99d7SShri Abhyankar       if (rs>sctx.shift_top) sctx.shift_top = rs;
1907628f99d7SShri Abhyankar     }
1908628f99d7SShri Abhyankar     if (sctx.shift_top == 0.0) sctx.shift_top += 1.e-12;
1909628f99d7SShri Abhyankar     sctx.shift_top *= 1.1;
1910628f99d7SShri Abhyankar     sctx.nshift_max = 5;
1911628f99d7SShri Abhyankar     sctx.shift_lo   = 0.;
1912628f99d7SShri Abhyankar     sctx.shift_hi   = 1.;
1913628f99d7SShri Abhyankar   }
1914628f99d7SShri Abhyankar   sctx.shift_amount = 0;
1915628f99d7SShri Abhyankar   sctx.nshift       = 0;
1916628f99d7SShri Abhyankar 
1917628f99d7SShri Abhyankar   ierr   = ISGetIndices(isrow,&r);CHKERRQ(ierr);
1918628f99d7SShri Abhyankar   ierr   = ISGetIndices(iscol,&c);CHKERRQ(ierr);
1919628f99d7SShri Abhyankar   ierr   = ISGetIndices(isicol,&ic);CHKERRQ(ierr);
19201795a4d1SJed Brown   ierr   = PetscCalloc3(n,&rtmp11,n,&rtmp22,n,&rtmp33);CHKERRQ(ierr);
1921628f99d7SShri Abhyankar   ics    = ic;
1922628f99d7SShri Abhyankar 
1923628f99d7SShri Abhyankar   node_max = a->inode.node_count;
1924628f99d7SShri Abhyankar   ns       = a->inode.size;
1925e7e72b3dSBarry Smith   if (!ns) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Matrix without inode information");
1926628f99d7SShri Abhyankar 
1927628f99d7SShri Abhyankar   /* If max inode size > 3, split it into two inodes.*/
1928628f99d7SShri Abhyankar   /* also map the inode sizes according to the ordering */
1929854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tmp_vec1);CHKERRQ(ierr);
1930628f99d7SShri Abhyankar   for (i=0,j=0; i<node_max; ++i,++j) {
1931628f99d7SShri Abhyankar     if (ns[i]>3) {
1932628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i]/2; /* Assuming ns[i] < =5  */
1933628f99d7SShri Abhyankar       ++j;
1934628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i] - tmp_vec1[j-1];
1935628f99d7SShri Abhyankar     } else {
1936628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i];
1937628f99d7SShri Abhyankar     }
1938628f99d7SShri Abhyankar   }
1939628f99d7SShri Abhyankar   /* Use the correct node_max */
1940628f99d7SShri Abhyankar   node_max = j;
1941628f99d7SShri Abhyankar 
1942628f99d7SShri Abhyankar   /* Now reorder the inode info based on mat re-ordering info */
1943628f99d7SShri Abhyankar   /* First create a row -> inode_size_array_index map */
1944071fcb05SBarry Smith   ierr = PetscMalloc2(n+1,&nsmap,node_max+1,&tmp_vec2);CHKERRQ(ierr);
1945628f99d7SShri Abhyankar   for (i=0,row=0; i<node_max; i++) {
1946628f99d7SShri Abhyankar     nodesz = tmp_vec1[i];
1947628f99d7SShri Abhyankar     for (j=0; j<nodesz; j++,row++) {
1948628f99d7SShri Abhyankar       nsmap[row] = i;
1949628f99d7SShri Abhyankar     }
1950628f99d7SShri Abhyankar   }
1951628f99d7SShri Abhyankar   /* Using nsmap, create a reordered ns structure */
1952628f99d7SShri Abhyankar   for (i=0,j=0; i< node_max; i++) {
1953628f99d7SShri Abhyankar     nodesz      = tmp_vec1[nsmap[r[j]]];     /* here the reordered row_no is in r[] */
1954628f99d7SShri Abhyankar     tmp_vec2[i] = nodesz;
1955628f99d7SShri Abhyankar     j          += nodesz;
1956628f99d7SShri Abhyankar   }
1957071fcb05SBarry Smith   ierr = PetscFree2(nsmap,tmp_vec1);CHKERRQ(ierr);
1958628f99d7SShri Abhyankar   /* Now use the correct ns */
1959628f99d7SShri Abhyankar   ns = tmp_vec2;
1960628f99d7SShri Abhyankar 
1961628f99d7SShri Abhyankar   do {
196207b50cabSHong Zhang     sctx.newshift = PETSC_FALSE;
1963628f99d7SShri Abhyankar     /* Now loop over each block-row, and do the factorization */
1964628f99d7SShri Abhyankar     for (i=0,row=0; i<node_max; i++) {
1965628f99d7SShri Abhyankar       nodesz = ns[i];
1966628f99d7SShri Abhyankar       nz     = bi[row+1] - bi[row];
1967628f99d7SShri Abhyankar       bjtmp  = bj + bi[row];
1968628f99d7SShri Abhyankar 
1969628f99d7SShri Abhyankar       switch (nodesz) {
1970628f99d7SShri Abhyankar       case 1:
1971628f99d7SShri Abhyankar         for  (j=0; j<nz; j++) {
1972628f99d7SShri Abhyankar           idx         = bjtmp[j];
1973628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
1974628f99d7SShri Abhyankar         }
1975628f99d7SShri Abhyankar 
1976628f99d7SShri Abhyankar         /* load in initial (unfactored row) */
1977628f99d7SShri Abhyankar         idx    = r[row];
1978628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
1979628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
1980628f99d7SShri Abhyankar         v1     = aa + ai[idx];
1981628f99d7SShri Abhyankar 
1982628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
1983628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
1984628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
1985628f99d7SShri Abhyankar         }
1986628f99d7SShri Abhyankar         rtmp11[ics[r[row]]] += sctx.shift_amount;
1987628f99d7SShri Abhyankar 
1988628f99d7SShri Abhyankar         prow = *bjtmp++;
1989628f99d7SShri Abhyankar         while (prow < row) {
1990628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
1991628f99d7SShri Abhyankar           if (*pc1 != 0.0) {
1992628f99d7SShri Abhyankar             pv     = ba + bd[prow];
1993628f99d7SShri Abhyankar             pj     = nbj + bd[prow];
1994628f99d7SShri Abhyankar             mul1   = *pc1 * *pv++;
1995628f99d7SShri Abhyankar             *pc1   = mul1;
1996628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
1997ca0c957dSBarry Smith             ierr   = PetscLogFlops(1+2.0*nz_tmp);CHKERRQ(ierr);
1998628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
1999628f99d7SShri Abhyankar               tmp          = pv[j];
2000628f99d7SShri Abhyankar               idx          = pj[j];
2001628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2002628f99d7SShri Abhyankar             }
2003628f99d7SShri Abhyankar           }
2004628f99d7SShri Abhyankar           prow = *bjtmp++;
2005628f99d7SShri Abhyankar         }
2006628f99d7SShri Abhyankar         pj  = bj + bi[row];
2007628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2008628f99d7SShri Abhyankar 
2009628f99d7SShri Abhyankar         sctx.pv     = rtmp11[row];
2010628f99d7SShri Abhyankar         rtmp11[row] = 1.0/rtmp11[row]; /* invert diag */
2011628f99d7SShri Abhyankar         rs          = 0.0;
2012628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2013628f99d7SShri Abhyankar           idx    = pj[j];
2014628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx]; /* rtmp11 -> ba */
2015628f99d7SShri Abhyankar           if (idx != row) rs += PetscAbsScalar(pc1[j]);
2016628f99d7SShri Abhyankar         }
2017628f99d7SShri Abhyankar         sctx.rs = rs;
20184cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row);CHKERRQ(ierr);
201907b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2020628f99d7SShri Abhyankar         break;
2021628f99d7SShri Abhyankar 
2022628f99d7SShri Abhyankar       case 2:
2023628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2024628f99d7SShri Abhyankar           idx         = bjtmp[j];
2025628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
2026628f99d7SShri Abhyankar           rtmp22[idx] = 0.0;
2027628f99d7SShri Abhyankar         }
2028628f99d7SShri Abhyankar 
2029628f99d7SShri Abhyankar         /* load in initial (unfactored row) */
2030628f99d7SShri Abhyankar         idx    = r[row];
2031628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
2032628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
2033628f99d7SShri Abhyankar         v1     = aa + ai[idx];
2034628f99d7SShri Abhyankar         v2     = aa + ai[idx+1];
2035628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
2036628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
2037628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
2038628f99d7SShri Abhyankar           rtmp22[idx] = v2[j];
2039628f99d7SShri Abhyankar         }
2040628f99d7SShri Abhyankar         rtmp11[ics[r[row]]]   += sctx.shift_amount;
2041628f99d7SShri Abhyankar         rtmp22[ics[r[row+1]]] += sctx.shift_amount;
2042628f99d7SShri Abhyankar 
2043628f99d7SShri Abhyankar         prow = *bjtmp++;
2044628f99d7SShri Abhyankar         while (prow < row) {
2045628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
2046628f99d7SShri Abhyankar           pc2 = rtmp22 + prow;
2047628f99d7SShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0) {
2048628f99d7SShri Abhyankar             pv   = ba + bd[prow];
2049628f99d7SShri Abhyankar             pj   = nbj + bd[prow];
2050628f99d7SShri Abhyankar             mul1 = *pc1 * *pv;
2051628f99d7SShri Abhyankar             mul2 = *pc2 * *pv;
2052628f99d7SShri Abhyankar             ++pv;
2053628f99d7SShri Abhyankar             *pc1 = mul1;
2054628f99d7SShri Abhyankar             *pc2 = mul2;
2055628f99d7SShri Abhyankar 
2056628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
2057628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2058628f99d7SShri Abhyankar               tmp          = pv[j];
2059628f99d7SShri Abhyankar               idx          = pj[j];
2060628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2061628f99d7SShri Abhyankar               rtmp22[idx] -= mul2 * tmp;
2062628f99d7SShri Abhyankar             }
2063ca0c957dSBarry Smith             ierr = PetscLogFlops(2+4.0*nz_tmp);CHKERRQ(ierr);
2064628f99d7SShri Abhyankar           }
2065628f99d7SShri Abhyankar           prow = *bjtmp++;
2066628f99d7SShri Abhyankar         }
2067628f99d7SShri Abhyankar 
2068628f99d7SShri Abhyankar         /* Now take care of diagonal 2x2 block. Note: prow = row here */
2069628f99d7SShri Abhyankar         pc1 = rtmp11 + prow;
2070628f99d7SShri Abhyankar         pc2 = rtmp22 + prow;
2071628f99d7SShri Abhyankar 
2072628f99d7SShri Abhyankar         sctx.pv = *pc1;
2073628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2074628f99d7SShri Abhyankar         rs      = 0.0;
2075628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2076628f99d7SShri Abhyankar           idx = pj[j];
2077628f99d7SShri Abhyankar           if (idx != prow) rs += PetscAbsScalar(rtmp11[idx]);
2078628f99d7SShri Abhyankar         }
2079628f99d7SShri Abhyankar         sctx.rs = rs;
20804cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row);CHKERRQ(ierr);
208107b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2082628f99d7SShri Abhyankar 
2083628f99d7SShri Abhyankar         if (*pc2 != 0.0) {
2084628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2085628f99d7SShri Abhyankar           mul2   = (*pc2)/(*pc1); /* since diag is not yet inverted.*/
2086628f99d7SShri Abhyankar           *pc2   = mul2;
2087628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2088628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2089628f99d7SShri Abhyankar             idx          = pj[j];
2090628f99d7SShri Abhyankar             tmp          = rtmp11[idx];
2091628f99d7SShri Abhyankar             rtmp22[idx] -= mul2 * tmp;
2092628f99d7SShri Abhyankar           }
2093ca0c957dSBarry Smith           ierr = PetscLogFlops(1+2.0*nz_tmp);CHKERRQ(ierr);
2094628f99d7SShri Abhyankar         }
2095628f99d7SShri Abhyankar 
2096628f99d7SShri Abhyankar         pj  = bj + bi[row];
2097628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2098628f99d7SShri Abhyankar         pc2 = ba + bi[row+1];
2099628f99d7SShri Abhyankar 
2100628f99d7SShri Abhyankar         sctx.pv       = rtmp22[row+1];
2101628f99d7SShri Abhyankar         rs            = 0.0;
2102628f99d7SShri Abhyankar         rtmp11[row]   = 1.0/rtmp11[row];
2103628f99d7SShri Abhyankar         rtmp22[row+1] = 1.0/rtmp22[row+1];
2104628f99d7SShri Abhyankar         /* copy row entries from dense representation to sparse */
2105628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2106628f99d7SShri Abhyankar           idx    = pj[j];
2107628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx];
2108628f99d7SShri Abhyankar           pc2[j] = rtmp22[idx];
2109628f99d7SShri Abhyankar           if (idx != row+1) rs += PetscAbsScalar(pc2[j]);
2110628f99d7SShri Abhyankar         }
2111628f99d7SShri Abhyankar         sctx.rs = rs;
21124cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row+1);CHKERRQ(ierr);
211307b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2114628f99d7SShri Abhyankar         break;
2115628f99d7SShri Abhyankar 
2116628f99d7SShri Abhyankar       case 3:
2117628f99d7SShri Abhyankar         for  (j=0; j<nz; j++) {
2118628f99d7SShri Abhyankar           idx         = bjtmp[j];
2119628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
2120628f99d7SShri Abhyankar           rtmp22[idx] = 0.0;
2121628f99d7SShri Abhyankar           rtmp33[idx] = 0.0;
2122628f99d7SShri Abhyankar         }
2123628f99d7SShri Abhyankar         /* copy the nonzeros for the 3 rows from sparse representation to dense in rtmp*[] */
2124628f99d7SShri Abhyankar         idx    = r[row];
2125628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
2126628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
2127628f99d7SShri Abhyankar         v1     = aa + ai[idx];
2128628f99d7SShri Abhyankar         v2     = aa + ai[idx+1];
2129628f99d7SShri Abhyankar         v3     = aa + ai[idx+2];
2130628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
2131628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
2132628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
2133628f99d7SShri Abhyankar           rtmp22[idx] = v2[j];
2134628f99d7SShri Abhyankar           rtmp33[idx] = v3[j];
2135628f99d7SShri Abhyankar         }
2136628f99d7SShri Abhyankar         rtmp11[ics[r[row]]]   += sctx.shift_amount;
2137628f99d7SShri Abhyankar         rtmp22[ics[r[row+1]]] += sctx.shift_amount;
2138628f99d7SShri Abhyankar         rtmp33[ics[r[row+2]]] += sctx.shift_amount;
2139628f99d7SShri Abhyankar 
2140628f99d7SShri Abhyankar         /* loop over all pivot row blocks above this row block */
2141628f99d7SShri Abhyankar         prow = *bjtmp++;
2142628f99d7SShri Abhyankar         while (prow < row) {
2143628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
2144628f99d7SShri Abhyankar           pc2 = rtmp22 + prow;
2145628f99d7SShri Abhyankar           pc3 = rtmp33 + prow;
2146628f99d7SShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 !=0.0) {
2147628f99d7SShri Abhyankar             pv   = ba  + bd[prow];
2148628f99d7SShri Abhyankar             pj   = nbj + bd[prow];
2149628f99d7SShri Abhyankar             mul1 = *pc1 * *pv;
2150628f99d7SShri Abhyankar             mul2 = *pc2 * *pv;
2151628f99d7SShri Abhyankar             mul3 = *pc3 * *pv;
2152628f99d7SShri Abhyankar             ++pv;
2153628f99d7SShri Abhyankar             *pc1 = mul1;
2154628f99d7SShri Abhyankar             *pc2 = mul2;
2155628f99d7SShri Abhyankar             *pc3 = mul3;
2156628f99d7SShri Abhyankar 
2157628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
2158628f99d7SShri Abhyankar             /* update this row based on pivot row */
2159628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2160628f99d7SShri Abhyankar               tmp          = pv[j];
2161628f99d7SShri Abhyankar               idx          = pj[j];
2162628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2163628f99d7SShri Abhyankar               rtmp22[idx] -= mul2 * tmp;
2164628f99d7SShri Abhyankar               rtmp33[idx] -= mul3 * tmp;
2165628f99d7SShri Abhyankar             }
2166ca0c957dSBarry Smith             ierr = PetscLogFlops(3+6.0*nz_tmp);CHKERRQ(ierr);
2167628f99d7SShri Abhyankar           }
2168628f99d7SShri Abhyankar           prow = *bjtmp++;
2169628f99d7SShri Abhyankar         }
2170628f99d7SShri Abhyankar 
2171628f99d7SShri Abhyankar         /* Now take care of diagonal 3x3 block in this set of rows */
2172628f99d7SShri Abhyankar         /* note: prow = row here */
2173628f99d7SShri Abhyankar         pc1 = rtmp11 + prow;
2174628f99d7SShri Abhyankar         pc2 = rtmp22 + prow;
2175628f99d7SShri Abhyankar         pc3 = rtmp33 + prow;
2176628f99d7SShri Abhyankar 
2177628f99d7SShri Abhyankar         sctx.pv = *pc1;
2178628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2179628f99d7SShri Abhyankar         rs      = 0.0;
2180628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2181628f99d7SShri Abhyankar           idx = pj[j];
2182628f99d7SShri Abhyankar           if (idx != row) rs += PetscAbsScalar(rtmp11[idx]);
2183628f99d7SShri Abhyankar         }
2184628f99d7SShri Abhyankar         sctx.rs = rs;
21854cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row);CHKERRQ(ierr);
218607b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2187628f99d7SShri Abhyankar 
2188628f99d7SShri Abhyankar         if (*pc2 != 0.0 || *pc3 != 0.0) {
2189628f99d7SShri Abhyankar           mul2   = (*pc2)/(*pc1);
2190628f99d7SShri Abhyankar           mul3   = (*pc3)/(*pc1);
2191628f99d7SShri Abhyankar           *pc2   = mul2;
2192628f99d7SShri Abhyankar           *pc3   = mul3;
2193628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2194628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2195628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2196628f99d7SShri Abhyankar             idx          = pj[j];
2197628f99d7SShri Abhyankar             tmp          = rtmp11[idx];
2198628f99d7SShri Abhyankar             rtmp22[idx] -= mul2 * tmp;
2199628f99d7SShri Abhyankar             rtmp33[idx] -= mul3 * tmp;
2200628f99d7SShri Abhyankar           }
2201ca0c957dSBarry Smith           ierr = PetscLogFlops(2+4.0*nz_tmp);CHKERRQ(ierr);
2202628f99d7SShri Abhyankar         }
2203628f99d7SShri Abhyankar         ++prow;
2204628f99d7SShri Abhyankar 
2205628f99d7SShri Abhyankar         pc2     = rtmp22 + prow;
2206628f99d7SShri Abhyankar         pc3     = rtmp33 + prow;
2207628f99d7SShri Abhyankar         sctx.pv = *pc2;
2208628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2209628f99d7SShri Abhyankar         rs      = 0.0;
2210628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2211628f99d7SShri Abhyankar           idx = pj[j];
2212628f99d7SShri Abhyankar           if (idx != prow) rs += PetscAbsScalar(rtmp22[idx]);
2213628f99d7SShri Abhyankar         }
2214628f99d7SShri Abhyankar         sctx.rs = rs;
22154cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row+1);CHKERRQ(ierr);
221607b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2217628f99d7SShri Abhyankar 
2218628f99d7SShri Abhyankar         if (*pc3 != 0.0) {
2219628f99d7SShri Abhyankar           mul3   = (*pc3)/(*pc2);
2220628f99d7SShri Abhyankar           *pc3   = mul3;
2221628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2222628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2223628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2224628f99d7SShri Abhyankar             idx          = pj[j];
2225628f99d7SShri Abhyankar             tmp          = rtmp22[idx];
2226628f99d7SShri Abhyankar             rtmp33[idx] -= mul3 * tmp;
2227628f99d7SShri Abhyankar           }
2228ca0c957dSBarry Smith           ierr = PetscLogFlops(1+2.0*nz_tmp);CHKERRQ(ierr);
2229628f99d7SShri Abhyankar         }
2230628f99d7SShri Abhyankar 
2231628f99d7SShri Abhyankar         pj  = bj + bi[row];
2232628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2233628f99d7SShri Abhyankar         pc2 = ba + bi[row+1];
2234628f99d7SShri Abhyankar         pc3 = ba + bi[row+2];
2235628f99d7SShri Abhyankar 
2236628f99d7SShri Abhyankar         sctx.pv       = rtmp33[row+2];
2237628f99d7SShri Abhyankar         rs            = 0.0;
2238628f99d7SShri Abhyankar         rtmp11[row]   = 1.0/rtmp11[row];
2239628f99d7SShri Abhyankar         rtmp22[row+1] = 1.0/rtmp22[row+1];
2240628f99d7SShri Abhyankar         rtmp33[row+2] = 1.0/rtmp33[row+2];
2241628f99d7SShri Abhyankar         /* copy row entries from dense representation to sparse */
2242628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2243628f99d7SShri Abhyankar           idx    = pj[j];
2244628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx];
2245628f99d7SShri Abhyankar           pc2[j] = rtmp22[idx];
2246628f99d7SShri Abhyankar           pc3[j] = rtmp33[idx];
2247628f99d7SShri Abhyankar           if (idx != row+2) rs += PetscAbsScalar(pc3[j]);
2248628f99d7SShri Abhyankar         }
2249628f99d7SShri Abhyankar 
2250628f99d7SShri Abhyankar         sctx.rs = rs;
22514cccfbddSHong Zhang         ierr    = MatPivotCheck(B,A,info,&sctx,row+2);CHKERRQ(ierr);
225207b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2253628f99d7SShri Abhyankar         break;
2254628f99d7SShri Abhyankar 
2255628f99d7SShri Abhyankar       default:
2256546078acSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Node size not yet supported ");
2257628f99d7SShri Abhyankar       }
2258628f99d7SShri Abhyankar       row += nodesz;                 /* Update the row */
2259628f99d7SShri Abhyankar     }
2260628f99d7SShri Abhyankar endofwhile:;
226107b50cabSHong Zhang   } while (sctx.newshift);
2262eb9baa12SBarry Smith   ierr = PetscFree3(rtmp11,rtmp22,rtmp33);CHKERRQ(ierr);
2263628f99d7SShri Abhyankar   ierr = PetscFree(tmp_vec2);CHKERRQ(ierr);
2264628f99d7SShri Abhyankar   ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr);
2265628f99d7SShri Abhyankar   ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr);
2266628f99d7SShri Abhyankar   ierr = ISRestoreIndices(iscol,&c);CHKERRQ(ierr);
22672205254eSKarl Rupp 
2268d3ac4fa3SBarry Smith   (B)->ops->solve = MatSolve_SeqAIJ_inplace;
2269628f99d7SShri Abhyankar   /* do not set solve add, since MatSolve_Inode + Add is faster */
2270628f99d7SShri Abhyankar   C->ops->solvetranspose    = MatSolveTranspose_SeqAIJ_inplace;
2271628f99d7SShri Abhyankar   C->ops->solvetransposeadd = MatSolveTransposeAdd_SeqAIJ_inplace;
2272628f99d7SShri Abhyankar   C->assembled              = PETSC_TRUE;
2273628f99d7SShri Abhyankar   C->preallocated           = PETSC_TRUE;
2274628f99d7SShri Abhyankar   if (sctx.nshift) {
2275f4db908eSBarry Smith     if (info->shifttype == (PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) {
2276c0aa6a63SJacob Faibussowitsch       ierr = PetscInfo4(A,"number of shift_pd tries %" PetscInt_FMT ", shift_amount %g, diagonal shifted up by %e fraction top_value %e\n",sctx.nshift,(double)sctx.shift_amount,(double)sctx.shift_fraction,(double)sctx.shift_top);CHKERRQ(ierr);
2277f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_NONZERO) {
2278c0aa6a63SJacob Faibussowitsch       ierr = PetscInfo2(A,"number of shift_nz tries %" PetscInt_FMT ", shift_amount %g\n",sctx.nshift,(double)sctx.shift_amount);CHKERRQ(ierr);
2279628f99d7SShri Abhyankar     }
2280628f99d7SShri Abhyankar   }
2281628f99d7SShri Abhyankar   ierr = PetscLogFlops(C->cmap->n);CHKERRQ(ierr);
2282a02bda8eSBarry Smith   ierr = MatSeqAIJCheckInode(C);CHKERRQ(ierr);
2283628f99d7SShri Abhyankar   PetscFunctionReturn(0);
2284628f99d7SShri Abhyankar }
2285628f99d7SShri Abhyankar 
2286019b515eSShri Abhyankar /* ----------------------------------------------------------- */
228735233d99SShri Abhyankar PetscErrorCode MatSolve_SeqAIJ_Inode(Mat A,Vec bb,Vec xx)
2288019b515eSShri Abhyankar {
2289019b515eSShri Abhyankar   Mat_SeqAIJ        *a    = (Mat_SeqAIJ*)A->data;
2290019b515eSShri Abhyankar   IS                iscol = a->col,isrow = a->row;
2291019b515eSShri Abhyankar   PetscErrorCode    ierr;
2292019b515eSShri Abhyankar   const PetscInt    *r,*c,*rout,*cout;
22938758e1faSBarry Smith   PetscInt          i,j,n = A->rmap->n;
22948758e1faSBarry Smith   PetscInt          node_max,row,nsz,aii,i0,i1,nz;
22958758e1faSBarry Smith   const PetscInt    *ai = a->i,*a_j = a->j,*ns,*vi,*ad,*aj;
2296019b515eSShri Abhyankar   PetscScalar       *x,*tmp,*tmps,tmp0,tmp1;
2297019b515eSShri Abhyankar   PetscScalar       sum1,sum2,sum3,sum4,sum5;
2298019b515eSShri Abhyankar   const MatScalar   *v1,*v2,*v3,*v4,*v5,*a_a = a->a,*aa;
2299019b515eSShri Abhyankar   const PetscScalar *b;
2300019b515eSShri Abhyankar 
2301019b515eSShri Abhyankar   PetscFunctionBegin;
2302e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
2303019b515eSShri Abhyankar   node_max = a->inode.node_count;
2304019b515eSShri Abhyankar   ns       = a->inode.size;     /* Node Size array */
2305019b515eSShri Abhyankar 
23063649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2307fdc842d1SBarry Smith   ierr = VecGetArrayWrite(xx,&x);CHKERRQ(ierr);
2308019b515eSShri Abhyankar   tmp  = a->solve_work;
2309019b515eSShri Abhyankar 
2310019b515eSShri Abhyankar   ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout;
2311019b515eSShri Abhyankar   ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout;
2312019b515eSShri Abhyankar 
2313019b515eSShri Abhyankar   /* forward solve the lower triangular */
2314019b515eSShri Abhyankar   tmps = tmp;
2315019b515eSShri Abhyankar   aa   = a_a;
2316019b515eSShri Abhyankar   aj   = a_j;
2317019b515eSShri Abhyankar   ad   = a->diag;
2318019b515eSShri Abhyankar 
2319019b515eSShri Abhyankar   for (i = 0,row = 0; i< node_max; ++i) {
2320019b515eSShri Abhyankar     nsz = ns[i];
2321019b515eSShri Abhyankar     aii = ai[row];
2322019b515eSShri Abhyankar     v1  = aa + aii;
2323019b515eSShri Abhyankar     vi  = aj + aii;
2324019b515eSShri Abhyankar     nz  = ai[row+1]- ai[row];
2325019b515eSShri Abhyankar 
232698991853SShri Abhyankar     if (i < node_max-1) {
232798991853SShri Abhyankar       /* Prefetch the indices for the next block */
232850d8bf02SJed Brown       PetscPrefetchBlock(aj+ai[row+nsz],ai[row+nsz+1]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA); /* indices */
232998991853SShri Abhyankar       /* Prefetch the data for the next block */
233050d8bf02SJed Brown       PetscPrefetchBlock(aa+ai[row+nsz],ai[row+nsz+ns[i+1]]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA);
233198991853SShri Abhyankar     }
233298991853SShri Abhyankar 
2333019b515eSShri Abhyankar     switch (nsz) {               /* Each loop in 'case' is unrolled */
2334019b515eSShri Abhyankar     case 1:
2335019b515eSShri Abhyankar       sum1 = b[r[row]];
2336019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2337019b515eSShri Abhyankar         i0    = vi[j];
2338019b515eSShri Abhyankar         i1    = vi[j+1];
2339019b515eSShri Abhyankar         tmp0  = tmps[i0];
2340019b515eSShri Abhyankar         tmp1  = tmps[i1];
2341019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0 + v1[j+1]*tmp1;
2342019b515eSShri Abhyankar       }
2343019b515eSShri Abhyankar       if (j == nz-1) {
2344019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2345019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0;
2346019b515eSShri Abhyankar       }
2347019b515eSShri Abhyankar       tmp[row++]=sum1;
2348019b515eSShri Abhyankar       break;
2349019b515eSShri Abhyankar     case 2:
2350019b515eSShri Abhyankar       sum1 = b[r[row]];
2351019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2352019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2353019b515eSShri Abhyankar 
2354019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2355019b515eSShri Abhyankar         i0    = vi[j];
2356019b515eSShri Abhyankar         i1    = vi[j+1];
2357019b515eSShri Abhyankar         tmp0  = tmps[i0];
2358019b515eSShri Abhyankar         tmp1  = tmps[i1];
2359019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2360019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2361019b515eSShri Abhyankar       }
2362019b515eSShri Abhyankar       if (j == nz-1) {
2363019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2364019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2365019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2366019b515eSShri Abhyankar       }
2367019b515eSShri Abhyankar       sum2     -= v2[nz] * sum1;
2368019b515eSShri Abhyankar       tmp[row++]=sum1;
2369019b515eSShri Abhyankar       tmp[row++]=sum2;
2370019b515eSShri Abhyankar       break;
2371019b515eSShri Abhyankar     case 3:
2372019b515eSShri Abhyankar       sum1 = b[r[row]];
2373019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2374019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2375019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2376019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2377019b515eSShri Abhyankar 
2378019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2379019b515eSShri Abhyankar         i0    = vi[j];
2380019b515eSShri Abhyankar         i1    = vi[j+1];
2381019b515eSShri Abhyankar         tmp0  = tmps[i0];
2382019b515eSShri Abhyankar         tmp1  = tmps[i1];
2383019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2384019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2385019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2386019b515eSShri Abhyankar       }
2387019b515eSShri Abhyankar       if (j == nz-1) {
2388019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2389019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2390019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2391019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2392019b515eSShri Abhyankar       }
2393019b515eSShri Abhyankar       sum2     -= v2[nz] * sum1;
2394019b515eSShri Abhyankar       sum3     -= v3[nz] * sum1;
2395019b515eSShri Abhyankar       sum3     -= v3[nz+1] * sum2;
2396019b515eSShri Abhyankar       tmp[row++]=sum1;
2397019b515eSShri Abhyankar       tmp[row++]=sum2;
2398019b515eSShri Abhyankar       tmp[row++]=sum3;
2399019b515eSShri Abhyankar       break;
2400019b515eSShri Abhyankar 
2401019b515eSShri Abhyankar     case 4:
2402019b515eSShri Abhyankar       sum1 = b[r[row]];
2403019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2404019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2405019b515eSShri Abhyankar       sum4 = b[r[row+3]];
2406019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2407019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2408019b515eSShri Abhyankar       v4   = aa + ai[row+3];
2409019b515eSShri Abhyankar 
2410019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2411019b515eSShri Abhyankar         i0    = vi[j];
2412019b515eSShri Abhyankar         i1    = vi[j+1];
2413019b515eSShri Abhyankar         tmp0  = tmps[i0];
2414019b515eSShri Abhyankar         tmp1  = tmps[i1];
2415019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2416019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2417019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2418019b515eSShri Abhyankar         sum4 -= v4[j] * tmp0 + v4[j+1] * tmp1;
2419019b515eSShri Abhyankar       }
2420019b515eSShri Abhyankar       if (j == nz-1) {
2421019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2422019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2423019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2424019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2425019b515eSShri Abhyankar         sum4 -= v4[j] *tmp0;
2426019b515eSShri Abhyankar       }
2427019b515eSShri Abhyankar       sum2 -= v2[nz] * sum1;
2428019b515eSShri Abhyankar       sum3 -= v3[nz] * sum1;
2429019b515eSShri Abhyankar       sum4 -= v4[nz] * sum1;
2430019b515eSShri Abhyankar       sum3 -= v3[nz+1] * sum2;
2431019b515eSShri Abhyankar       sum4 -= v4[nz+1] * sum2;
2432019b515eSShri Abhyankar       sum4 -= v4[nz+2] * sum3;
2433019b515eSShri Abhyankar 
2434019b515eSShri Abhyankar       tmp[row++]=sum1;
2435019b515eSShri Abhyankar       tmp[row++]=sum2;
2436019b515eSShri Abhyankar       tmp[row++]=sum3;
2437019b515eSShri Abhyankar       tmp[row++]=sum4;
2438019b515eSShri Abhyankar       break;
2439019b515eSShri Abhyankar     case 5:
2440019b515eSShri Abhyankar       sum1 = b[r[row]];
2441019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2442019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2443019b515eSShri Abhyankar       sum4 = b[r[row+3]];
2444019b515eSShri Abhyankar       sum5 = b[r[row+4]];
2445019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2446019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2447019b515eSShri Abhyankar       v4   = aa + ai[row+3];
2448019b515eSShri Abhyankar       v5   = aa + ai[row+4];
2449019b515eSShri Abhyankar 
2450019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2451019b515eSShri Abhyankar         i0    = vi[j];
2452019b515eSShri Abhyankar         i1    = vi[j+1];
2453019b515eSShri Abhyankar         tmp0  = tmps[i0];
2454019b515eSShri Abhyankar         tmp1  = tmps[i1];
2455019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2456019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2457019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2458019b515eSShri Abhyankar         sum4 -= v4[j] * tmp0 + v4[j+1] * tmp1;
2459019b515eSShri Abhyankar         sum5 -= v5[j] * tmp0 + v5[j+1] * tmp1;
2460019b515eSShri Abhyankar       }
2461019b515eSShri Abhyankar       if (j == nz-1) {
2462019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2463019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2464019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2465019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2466019b515eSShri Abhyankar         sum4 -= v4[j] *tmp0;
2467019b515eSShri Abhyankar         sum5 -= v5[j] *tmp0;
2468019b515eSShri Abhyankar       }
2469019b515eSShri Abhyankar 
2470019b515eSShri Abhyankar       sum2 -= v2[nz] * sum1;
2471019b515eSShri Abhyankar       sum3 -= v3[nz] * sum1;
2472019b515eSShri Abhyankar       sum4 -= v4[nz] * sum1;
2473019b515eSShri Abhyankar       sum5 -= v5[nz] * sum1;
2474019b515eSShri Abhyankar       sum3 -= v3[nz+1] * sum2;
2475019b515eSShri Abhyankar       sum4 -= v4[nz+1] * sum2;
2476019b515eSShri Abhyankar       sum5 -= v5[nz+1] * sum2;
2477019b515eSShri Abhyankar       sum4 -= v4[nz+2] * sum3;
2478019b515eSShri Abhyankar       sum5 -= v5[nz+2] * sum3;
2479019b515eSShri Abhyankar       sum5 -= v5[nz+3] * sum4;
2480019b515eSShri Abhyankar 
2481019b515eSShri Abhyankar       tmp[row++]=sum1;
2482019b515eSShri Abhyankar       tmp[row++]=sum2;
2483019b515eSShri Abhyankar       tmp[row++]=sum3;
2484019b515eSShri Abhyankar       tmp[row++]=sum4;
2485019b515eSShri Abhyankar       tmp[row++]=sum5;
2486019b515eSShri Abhyankar       break;
2487019b515eSShri Abhyankar     default:
2488546078acSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported ");
2489019b515eSShri Abhyankar     }
2490019b515eSShri Abhyankar   }
2491019b515eSShri Abhyankar   /* backward solve the upper triangular */
2492019b515eSShri Abhyankar   for (i=node_max -1,row = n-1; i>=0; i--) {
2493019b515eSShri Abhyankar     nsz = ns[i];
2494019b515eSShri Abhyankar     aii = ad[row+1] + 1;
2495019b515eSShri Abhyankar     v1  = aa + aii;
2496019b515eSShri Abhyankar     vi  = aj + aii;
2497019b515eSShri Abhyankar     nz  = ad[row]- ad[row+1] - 1;
249898991853SShri Abhyankar 
249998991853SShri Abhyankar     if (i > 0) {
250098991853SShri Abhyankar       /* Prefetch the indices for the next block */
250150d8bf02SJed Brown       PetscPrefetchBlock(aj+ad[row-nsz+1]+1,ad[row-nsz]-ad[row-nsz+1],0,PETSC_PREFETCH_HINT_NTA);
250298991853SShri Abhyankar       /* Prefetch the data for the next block */
250350d8bf02SJed Brown       PetscPrefetchBlock(aa+ad[row-nsz+1]+1,ad[row-nsz-ns[i-1]+1]-ad[row-nsz+1],0,PETSC_PREFETCH_HINT_NTA);
250498991853SShri Abhyankar     }
250598991853SShri Abhyankar 
2506019b515eSShri Abhyankar     switch (nsz) {               /* Each loop in 'case' is unrolled */
2507019b515eSShri Abhyankar     case 1:
2508019b515eSShri Abhyankar       sum1 = tmp[row];
2509019b515eSShri Abhyankar 
2510019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2511019b515eSShri Abhyankar         i0    = vi[j];
2512019b515eSShri Abhyankar         i1    = vi[j+1];
2513019b515eSShri Abhyankar         tmp0  = tmps[i0];
2514019b515eSShri Abhyankar         tmp1  = tmps[i1];
2515019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2516019b515eSShri Abhyankar       }
2517019b515eSShri Abhyankar       if (j == nz-1) {
2518019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2519019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0;
2520019b515eSShri Abhyankar       }
2521019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2522019b515eSShri Abhyankar       break;
2523019b515eSShri Abhyankar     case 2:
2524019b515eSShri Abhyankar       sum1 = tmp[row];
2525019b515eSShri Abhyankar       sum2 = tmp[row-1];
2526019b515eSShri Abhyankar       v2   = aa + ad[row] + 1;
2527019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2528019b515eSShri Abhyankar         i0    = vi[j];
2529019b515eSShri Abhyankar         i1    = vi[j+1];
2530019b515eSShri Abhyankar         tmp0  = tmps[i0];
2531019b515eSShri Abhyankar         tmp1  = tmps[i1];
2532019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2533019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2534019b515eSShri Abhyankar       }
2535019b515eSShri Abhyankar       if (j == nz-1) {
2536019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2537019b515eSShri Abhyankar         sum1 -= v1[j]* tmp0;
2538019b515eSShri Abhyankar         sum2 -= v2[j+1]* tmp0;
2539019b515eSShri Abhyankar       }
2540019b515eSShri Abhyankar 
2541019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2542019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2543019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2544019b515eSShri Abhyankar       break;
2545019b515eSShri Abhyankar     case 3:
2546019b515eSShri Abhyankar       sum1 = tmp[row];
2547019b515eSShri Abhyankar       sum2 = tmp[row -1];
2548019b515eSShri Abhyankar       sum3 = tmp[row -2];
2549019b515eSShri Abhyankar       v2   = aa + ad[row] + 1;
2550019b515eSShri Abhyankar       v3   = aa + ad[row -1] + 1;
2551019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2552019b515eSShri Abhyankar         i0    = vi[j];
2553019b515eSShri Abhyankar         i1    = vi[j+1];
2554019b515eSShri Abhyankar         tmp0  = tmps[i0];
2555019b515eSShri Abhyankar         tmp1  = tmps[i1];
2556019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2557019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2558019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2559019b515eSShri Abhyankar       }
2560019b515eSShri Abhyankar       if (j== nz-1) {
2561019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2562019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2563019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2564019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2565019b515eSShri Abhyankar       }
2566019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2567019b515eSShri Abhyankar       sum2     -= v2[0]* tmp0;
2568019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2569019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2570019b515eSShri Abhyankar       sum3     -= v3[0]* tmp0;
2571019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2572019b515eSShri Abhyankar 
2573019b515eSShri Abhyankar       break;
2574019b515eSShri Abhyankar     case 4:
2575019b515eSShri Abhyankar       sum1 = tmp[row];
2576019b515eSShri Abhyankar       sum2 = tmp[row -1];
2577019b515eSShri Abhyankar       sum3 = tmp[row -2];
2578019b515eSShri Abhyankar       sum4 = tmp[row -3];
2579019b515eSShri Abhyankar       v2   = aa + ad[row]+1;
2580019b515eSShri Abhyankar       v3   = aa + ad[row -1]+1;
2581019b515eSShri Abhyankar       v4   = aa + ad[row -2]+1;
2582019b515eSShri Abhyankar 
2583019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2584019b515eSShri Abhyankar         i0    = vi[j];
2585019b515eSShri Abhyankar         i1    = vi[j+1];
2586019b515eSShri Abhyankar         tmp0  = tmps[i0];
2587019b515eSShri Abhyankar         tmp1  = tmps[i1];
2588019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0   + v1[j+1] * tmp1;
2589019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2590019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2591019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0 + v4[j+4] * tmp1;
2592019b515eSShri Abhyankar       }
2593019b515eSShri Abhyankar       if (j== nz-1) {
2594019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2595019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2596019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2597019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2598019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0;
2599019b515eSShri Abhyankar       }
2600019b515eSShri Abhyankar 
2601019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2602019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2603019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2604019b515eSShri Abhyankar       sum4     -= v4[2] * tmp0;
2605019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2606019b515eSShri Abhyankar       sum3     -= v3[0] * tmp0;
2607019b515eSShri Abhyankar       sum4     -= v4[1] * tmp0;
2608019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2609019b515eSShri Abhyankar       sum4     -= v4[0] * tmp0;
2610019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum4*v4[nz+3]; row--;
2611019b515eSShri Abhyankar       break;
2612019b515eSShri Abhyankar     case 5:
2613019b515eSShri Abhyankar       sum1 = tmp[row];
2614019b515eSShri Abhyankar       sum2 = tmp[row -1];
2615019b515eSShri Abhyankar       sum3 = tmp[row -2];
2616019b515eSShri Abhyankar       sum4 = tmp[row -3];
2617019b515eSShri Abhyankar       sum5 = tmp[row -4];
2618019b515eSShri Abhyankar       v2   = aa + ad[row]+1;
2619019b515eSShri Abhyankar       v3   = aa + ad[row -1]+1;
2620019b515eSShri Abhyankar       v4   = aa + ad[row -2]+1;
2621019b515eSShri Abhyankar       v5   = aa + ad[row -3]+1;
2622019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2623019b515eSShri Abhyankar         i0    = vi[j];
2624019b515eSShri Abhyankar         i1    = vi[j+1];
2625019b515eSShri Abhyankar         tmp0  = tmps[i0];
2626019b515eSShri Abhyankar         tmp1  = tmps[i1];
2627019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2628019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2629019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2630019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0 + v4[j+4] * tmp1;
2631019b515eSShri Abhyankar         sum5 -= v5[j+4] * tmp0 + v5[j+5] * tmp1;
2632019b515eSShri Abhyankar       }
2633019b515eSShri Abhyankar       if (j==nz-1) {
2634019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2635019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2636019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2637019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2638019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0;
2639019b515eSShri Abhyankar         sum5 -= v5[j+4] * tmp0;
2640019b515eSShri Abhyankar       }
2641019b515eSShri Abhyankar 
2642019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2643019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2644019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2645019b515eSShri Abhyankar       sum4     -= v4[2] * tmp0;
2646019b515eSShri Abhyankar       sum5     -= v5[3] * tmp0;
2647019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2648019b515eSShri Abhyankar       sum3     -= v3[0] * tmp0;
2649019b515eSShri Abhyankar       sum4     -= v4[1] * tmp0;
2650019b515eSShri Abhyankar       sum5     -= v5[2] * tmp0;
2651019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2652019b515eSShri Abhyankar       sum4     -= v4[0] * tmp0;
2653019b515eSShri Abhyankar       sum5     -= v5[1] * tmp0;
2654019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum4*v4[nz+3]; row--;
2655019b515eSShri Abhyankar       sum5     -= v5[0] * tmp0;
2656019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum5*v5[nz+4]; row--;
2657019b515eSShri Abhyankar       break;
2658019b515eSShri Abhyankar     default:
2659546078acSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported ");
2660019b515eSShri Abhyankar     }
2661019b515eSShri Abhyankar   }
2662019b515eSShri Abhyankar   ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr);
2663019b515eSShri Abhyankar   ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr);
26643649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2665fdc842d1SBarry Smith   ierr = VecRestoreArrayWrite(xx,&x);CHKERRQ(ierr);
2666019b515eSShri Abhyankar   ierr = PetscLogFlops(2.0*a->nz - A->cmap->n);CHKERRQ(ierr);
2667019b515eSShri Abhyankar   PetscFunctionReturn(0);
2668019b515eSShri Abhyankar }
2669019b515eSShri Abhyankar 
26704c1414c8SBarry Smith /*
26714c1414c8SBarry Smith      Makes a longer coloring[] array and calls the usual code with that
26724c1414c8SBarry Smith */
26734108e4d5SBarry Smith PetscErrorCode MatColoringPatch_SeqAIJ_Inode(Mat mat,PetscInt ncolors,PetscInt nin,ISColoringValue coloring[],ISColoring *iscoloring)
26744c1414c8SBarry Smith {
26754c1414c8SBarry Smith   Mat_SeqAIJ      *a = (Mat_SeqAIJ*)mat->data;
26764c1414c8SBarry Smith   PetscErrorCode  ierr;
2677d0f46423SBarry Smith   PetscInt        n = mat->cmap->n,m = a->inode.node_count,j,*ns = a->inode.size,row;
26784c1414c8SBarry Smith   PetscInt        *colorused,i;
26794c1414c8SBarry Smith   ISColoringValue *newcolor;
26804c1414c8SBarry Smith 
26814c1414c8SBarry Smith   PetscFunctionBegin;
2682b215bc84SStefano Zampini   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
2683854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&newcolor);CHKERRQ(ierr);
26844c1414c8SBarry Smith   /* loop over inodes, marking a color for each column*/
26854c1414c8SBarry Smith   row = 0;
26864c1414c8SBarry Smith   for (i=0; i<m; i++) {
26874c1414c8SBarry Smith     for (j=0; j<ns[i]; j++) {
26884c1414c8SBarry Smith       newcolor[row++] = coloring[i] + j*ncolors;
26894c1414c8SBarry Smith     }
26904c1414c8SBarry Smith   }
26914c1414c8SBarry Smith 
26924c1414c8SBarry Smith   /* eliminate unneeded colors */
26931795a4d1SJed Brown   ierr = PetscCalloc1(5*ncolors,&colorused);CHKERRQ(ierr);
26944c1414c8SBarry Smith   for (i=0; i<n; i++) {
26954c1414c8SBarry Smith     colorused[newcolor[i]] = 1;
26964c1414c8SBarry Smith   }
26974c1414c8SBarry Smith 
26984c1414c8SBarry Smith   for (i=1; i<5*ncolors; i++) {
26994c1414c8SBarry Smith     colorused[i] += colorused[i-1];
27004c1414c8SBarry Smith   }
27014c1414c8SBarry Smith   ncolors = colorused[5*ncolors-1];
27024c1414c8SBarry Smith   for (i=0; i<n; i++) {
270357815681SSatish Balay     newcolor[i] = colorused[newcolor[i]]-1;
27044c1414c8SBarry Smith   }
27054c1414c8SBarry Smith   ierr = PetscFree(colorused);CHKERRQ(ierr);
2706aaf3ff59SMatthew G. Knepley   ierr = ISColoringCreate(PetscObjectComm((PetscObject)mat),ncolors,n,newcolor,PETSC_OWN_POINTER,iscoloring);CHKERRQ(ierr);
27074c1414c8SBarry Smith   ierr = PetscFree(coloring);CHKERRQ(ierr);
27084c1414c8SBarry Smith   PetscFunctionReturn(0);
27094c1414c8SBarry Smith }
27104c1414c8SBarry Smith 
2711af0996ceSBarry Smith #include <petsc/private/kernels/blockinvert.h>
27122af78befSBarry Smith 
27134108e4d5SBarry Smith PetscErrorCode MatSOR_SeqAIJ_Inode(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
27142af78befSBarry Smith {
27152af78befSBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
27167aaeff0aSMatthew G. Knepley   PetscScalar       sum1 = 0.0,sum2 = 0.0,sum3 = 0.0,sum4 = 0.0,sum5 = 0.0,tmp0,tmp1,tmp2,tmp3;
27175850ef23SBarry Smith   MatScalar         *ibdiag,*bdiag,work[25],*t;
2718a8b09249SBarry Smith   PetscScalar       *x,tmp4,tmp5,x1,x2,x3,x4,x5;
27197aaeff0aSMatthew G. Knepley   const MatScalar   *v = a->a,*v1 = NULL,*v2 = NULL,*v3 = NULL,*v4 = NULL,*v5 = NULL;
27205850ef23SBarry Smith   const PetscScalar *xb, *b;
27217b6c816cSBarry Smith   PetscReal         zeropivot = 100.*PETSC_MACHINE_EPSILON, shift = 0.0;
27222af78befSBarry Smith   PetscErrorCode    ierr;
27238758e1faSBarry Smith   PetscInt          n,m = a->inode.node_count,cnt = 0,i,j,row,i1,i2;
27248758e1faSBarry Smith   PetscInt          sz,k,ipvt[5];
27257b6c816cSBarry Smith   PetscBool         allowzeropivot,zeropivotdetected;
27268758e1faSBarry Smith   const PetscInt    *sizes = a->inode.size,*idx,*diag = a->diag,*ii = a->i;
27272af78befSBarry Smith 
27282af78befSBarry Smith   PetscFunctionBegin;
2729a455e926SHong Zhang   allowzeropivot = PetscNot(A->erroriffailure);
2730b215bc84SStefano Zampini   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
2731e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for omega != 1.0; use -mat_no_inode");
2732e32f2f54SBarry Smith   if (fshift != 0.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for fshift != 0.0; use -mat_no_inode");
27332af78befSBarry Smith 
273471f1c65dSBarry Smith   if (!a->inode.ibdiagvalid) {
27352af78befSBarry Smith     if (!a->inode.ibdiag) {
27362af78befSBarry Smith       /* calculate space needed for diagonal blocks */
27372af78befSBarry Smith       for (i=0; i<m; i++) {
27382af78befSBarry Smith         cnt += sizes[i]*sizes[i];
27392af78befSBarry Smith       }
2740f0d39aaaSBarry Smith       a->inode.bdiagsize = cnt;
27412205254eSKarl Rupp 
2742dcca6d9dSJed Brown       ierr = PetscMalloc3(cnt,&a->inode.ibdiag,cnt,&a->inode.bdiag,A->rmap->n,&a->inode.ssor_work);CHKERRQ(ierr);
274371f1c65dSBarry Smith     }
274471f1c65dSBarry Smith 
274571f1c65dSBarry Smith     /* copy over the diagonal blocks and invert them */
27462af78befSBarry Smith     ibdiag = a->inode.ibdiag;
27472af78befSBarry Smith     bdiag  = a->inode.bdiag;
27482af78befSBarry Smith     cnt    = 0;
27492af78befSBarry Smith     for (i=0, row = 0; i<m; i++) {
27502af78befSBarry Smith       for (j=0; j<sizes[i]; j++) {
2751f0d39aaaSBarry Smith         for (k=0; k<sizes[i]; k++) {
2752f0d39aaaSBarry Smith           bdiag[cnt+k*sizes[i]+j] = v[diag[row+j] - j + k];
2753f0d39aaaSBarry Smith         }
27542af78befSBarry Smith       }
2755580bdb30SBarry Smith       ierr = PetscArraycpy(ibdiag+cnt,bdiag+cnt,sizes[i]*sizes[i]);CHKERRQ(ierr);
27562af78befSBarry Smith 
27572af78befSBarry Smith       switch (sizes[i]) {
27582af78befSBarry Smith       case 1:
27592af78befSBarry Smith         /* Create matrix data structure */
27608e0e2a9aSHong Zhang         if (PetscAbsScalar(ibdiag[cnt]) < zeropivot) {
27618e0e2a9aSHong Zhang           if (allowzeropivot) {
27627b6c816cSBarry Smith             A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27637b6c816cSBarry Smith             A->factorerror_zeropivot_value = PetscAbsScalar(ibdiag[cnt]);
27647b6c816cSBarry Smith             A->factorerror_zeropivot_row   = row;
2765c0aa6a63SJacob Faibussowitsch             ierr = PetscInfo1(A,"Zero pivot, row %" PetscInt_FMT "\n",row);CHKERRQ(ierr);
2766*98921bdaSJacob Faibussowitsch           } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot on row %" PetscInt_FMT,row);
27678e0e2a9aSHong Zhang         }
276864c62002SMatthew Knepley         ibdiag[cnt] = 1.0/ibdiag[cnt];
27692af78befSBarry Smith         break;
27702af78befSBarry Smith       case 2:
2771a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_2(ibdiag+cnt,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27727b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27732af78befSBarry Smith         break;
27742af78befSBarry Smith       case 3:
2775a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_3(ibdiag+cnt,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27767b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27772af78befSBarry Smith         break;
27782af78befSBarry Smith       case 4:
2779a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_4(ibdiag+cnt,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27807b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27812af78befSBarry Smith         break;
27822af78befSBarry Smith       case 5:
2783a455e926SHong Zhang         ierr = PetscKernel_A_gets_inverse_A_5(ibdiag+cnt,ipvt,work,shift,allowzeropivot,&zeropivotdetected);CHKERRQ(ierr);
27847b6c816cSBarry Smith         if (zeropivotdetected) A->factorerrortype = MAT_FACTOR_NUMERIC_ZEROPIVOT;
27852af78befSBarry Smith         break;
27862af78befSBarry Smith       default:
2787*98921bdaSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
27882af78befSBarry Smith       }
27892af78befSBarry Smith       cnt += sizes[i]*sizes[i];
27902af78befSBarry Smith       row += sizes[i];
27912af78befSBarry Smith     }
279271f1c65dSBarry Smith     a->inode.ibdiagvalid = PETSC_TRUE;
27932af78befSBarry Smith   }
27942af78befSBarry Smith   ibdiag = a->inode.ibdiag;
27952af78befSBarry Smith   bdiag  = a->inode.bdiag;
27965850ef23SBarry Smith   t      = a->inode.ssor_work;
27972af78befSBarry Smith 
27982af78befSBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
27993649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
28005850ef23SBarry Smith   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
28015850ef23SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
28022af78befSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
28032af78befSBarry Smith 
28048862d2efSBarry Smith       for (i=0, row=0; i<m; i++) {
28058862d2efSBarry Smith         sz  = diag[row] - ii[row];
28068862d2efSBarry Smith         v1  = a->a + ii[row];
28078862d2efSBarry Smith         idx = a->j + ii[row];
28088862d2efSBarry Smith 
28094108e4d5SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
28108862d2efSBarry Smith         switch (sizes[i]) {
28118862d2efSBarry Smith         case 1:
28128862d2efSBarry Smith 
28138862d2efSBarry Smith           sum1 = b[row];
28148862d2efSBarry Smith           for (n = 0; n<sz-1; n+=2) {
28158862d2efSBarry Smith             i1    = idx[0];
28168862d2efSBarry Smith             i2    = idx[1];
28178862d2efSBarry Smith             idx  += 2;
28188862d2efSBarry Smith             tmp0  = x[i1];
28198862d2efSBarry Smith             tmp1  = x[i2];
28208862d2efSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
28218862d2efSBarry Smith           }
28228862d2efSBarry Smith 
28238862d2efSBarry Smith           if (n == sz-1) {
2824f0d39aaaSBarry Smith             tmp0  = x[*idx];
2825f0d39aaaSBarry Smith             sum1 -= *v1 * tmp0;
28268862d2efSBarry Smith           }
28275850ef23SBarry Smith           t[row]   = sum1;
28288862d2efSBarry Smith           x[row++] = sum1*(*ibdiag++);
28298862d2efSBarry Smith           break;
2830f0d39aaaSBarry Smith         case 2:
2831f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2832f0d39aaaSBarry Smith           sum1 = b[row];
2833f0d39aaaSBarry Smith           sum2 = b[row+1];
2834f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2835f0d39aaaSBarry Smith             i1    = idx[0];
2836f0d39aaaSBarry Smith             i2    = idx[1];
2837f0d39aaaSBarry Smith             idx  += 2;
2838f0d39aaaSBarry Smith             tmp0  = x[i1];
2839f0d39aaaSBarry Smith             tmp1  = x[i2];
2840f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2841f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2842f0d39aaaSBarry Smith           }
2843f0d39aaaSBarry Smith 
2844f0d39aaaSBarry Smith           if (n == sz-1) {
2845f0d39aaaSBarry Smith             tmp0  = x[*idx];
2846f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2847f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2848f0d39aaaSBarry Smith           }
28495850ef23SBarry Smith           t[row]   = sum1;
28505850ef23SBarry Smith           t[row+1] = sum2;
2851f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[2];
2852f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[3];
2853f0d39aaaSBarry Smith           ibdiag  += 4;
2854f0d39aaaSBarry Smith           break;
2855f0d39aaaSBarry Smith         case 3:
2856f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2857f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2858f0d39aaaSBarry Smith           sum1 = b[row];
2859f0d39aaaSBarry Smith           sum2 = b[row+1];
2860f0d39aaaSBarry Smith           sum3 = b[row+2];
2861f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2862f0d39aaaSBarry Smith             i1    = idx[0];
2863f0d39aaaSBarry Smith             i2    = idx[1];
2864f0d39aaaSBarry Smith             idx  += 2;
2865f0d39aaaSBarry Smith             tmp0  = x[i1];
2866f0d39aaaSBarry Smith             tmp1  = x[i2];
2867f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2868f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2869f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2870f0d39aaaSBarry Smith           }
2871f0d39aaaSBarry Smith 
2872f0d39aaaSBarry Smith           if (n == sz-1) {
2873f0d39aaaSBarry Smith             tmp0  = x[*idx];
2874f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2875f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2876f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2877f0d39aaaSBarry Smith           }
28785850ef23SBarry Smith           t[row]   = sum1;
28795850ef23SBarry Smith           t[row+1] = sum2;
28805850ef23SBarry Smith           t[row+2] = sum3;
2881f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
2882f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
2883f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
2884f0d39aaaSBarry Smith           ibdiag  += 9;
2885f0d39aaaSBarry Smith           break;
2886f0d39aaaSBarry Smith         case 4:
2887f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2888f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2889f0d39aaaSBarry Smith           v4   = a->a + ii[row+3];
2890f0d39aaaSBarry Smith           sum1 = b[row];
2891f0d39aaaSBarry Smith           sum2 = b[row+1];
2892f0d39aaaSBarry Smith           sum3 = b[row+2];
2893f0d39aaaSBarry Smith           sum4 = b[row+3];
2894f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2895f0d39aaaSBarry Smith             i1    = idx[0];
2896f0d39aaaSBarry Smith             i2    = idx[1];
2897f0d39aaaSBarry Smith             idx  += 2;
2898f0d39aaaSBarry Smith             tmp0  = x[i1];
2899f0d39aaaSBarry Smith             tmp1  = x[i2];
2900f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2901f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2902f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2903f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
2904f0d39aaaSBarry Smith           }
2905f0d39aaaSBarry Smith 
2906f0d39aaaSBarry Smith           if (n == sz-1) {
2907f0d39aaaSBarry Smith             tmp0  = x[*idx];
2908f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2909f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2910f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2911f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0;
2912f0d39aaaSBarry Smith           }
29135850ef23SBarry Smith           t[row]   = sum1;
29145850ef23SBarry Smith           t[row+1] = sum2;
29155850ef23SBarry Smith           t[row+2] = sum3;
29165850ef23SBarry Smith           t[row+3] = sum4;
2917f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
2918f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
2919f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
2920f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
2921f0d39aaaSBarry Smith           ibdiag  += 16;
2922f0d39aaaSBarry Smith           break;
2923f0d39aaaSBarry Smith         case 5:
2924f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2925f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2926f0d39aaaSBarry Smith           v4   = a->a + ii[row+3];
2927f0d39aaaSBarry Smith           v5   = a->a + ii[row+4];
2928f0d39aaaSBarry Smith           sum1 = b[row];
2929f0d39aaaSBarry Smith           sum2 = b[row+1];
2930f0d39aaaSBarry Smith           sum3 = b[row+2];
2931f0d39aaaSBarry Smith           sum4 = b[row+3];
2932f0d39aaaSBarry Smith           sum5 = b[row+4];
2933f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2934f0d39aaaSBarry Smith             i1    = idx[0];
2935f0d39aaaSBarry Smith             i2    = idx[1];
2936f0d39aaaSBarry Smith             idx  += 2;
2937f0d39aaaSBarry Smith             tmp0  = x[i1];
2938f0d39aaaSBarry Smith             tmp1  = x[i2];
2939f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2940f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2941f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2942f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
2943f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
2944f0d39aaaSBarry Smith           }
2945f0d39aaaSBarry Smith 
2946f0d39aaaSBarry Smith           if (n == sz-1) {
2947f0d39aaaSBarry Smith             tmp0  = x[*idx];
2948f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2949f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2950f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2951f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0;
2952f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0;
2953f0d39aaaSBarry Smith           }
29545850ef23SBarry Smith           t[row]   = sum1;
29555850ef23SBarry Smith           t[row+1] = sum2;
29565850ef23SBarry Smith           t[row+2] = sum3;
29575850ef23SBarry Smith           t[row+3] = sum4;
29585850ef23SBarry Smith           t[row+4] = sum5;
2959f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
2960f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
2961f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
2962f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
2963f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
2964f0d39aaaSBarry Smith           ibdiag  += 25;
2965f0d39aaaSBarry Smith           break;
29668862d2efSBarry Smith         default:
2967*98921bdaSJacob Faibussowitsch           SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
29688862d2efSBarry Smith         }
29692af78befSBarry Smith       }
29702af78befSBarry Smith 
29715850ef23SBarry Smith       xb   = t;
29722af78befSBarry Smith       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
29732af78befSBarry Smith     } else xb = b;
29742af78befSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
29752af78befSBarry Smith 
2976f0d39aaaSBarry Smith       ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
2977d0f46423SBarry Smith       for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
2978f0d39aaaSBarry Smith         ibdiag -= sizes[i]*sizes[i];
29798862d2efSBarry Smith         sz      = ii[row+1] - diag[row] - 1;
29808862d2efSBarry Smith         v1      = a->a + diag[row] + 1;
29818862d2efSBarry Smith         idx     = a->j + diag[row] + 1;
29822af78befSBarry Smith 
29834108e4d5SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
29848862d2efSBarry Smith         switch (sizes[i]) {
29858862d2efSBarry Smith         case 1:
29868862d2efSBarry Smith 
29878862d2efSBarry Smith           sum1 = xb[row];
29888862d2efSBarry Smith           for (n = 0; n<sz-1; n+=2) {
29898862d2efSBarry Smith             i1    = idx[0];
29908862d2efSBarry Smith             i2    = idx[1];
29918862d2efSBarry Smith             idx  += 2;
29928862d2efSBarry Smith             tmp0  = x[i1];
29938862d2efSBarry Smith             tmp1  = x[i2];
29948862d2efSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
29958862d2efSBarry Smith           }
29968862d2efSBarry Smith 
29978862d2efSBarry Smith           if (n == sz-1) {
2998f0d39aaaSBarry Smith             tmp0  = x[*idx];
2999f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
30008862d2efSBarry Smith           }
3001f0d39aaaSBarry Smith           x[row--] = sum1*(*ibdiag);
3002f0d39aaaSBarry Smith           break;
3003f0d39aaaSBarry Smith 
3004f0d39aaaSBarry Smith         case 2:
3005f0d39aaaSBarry Smith 
3006f0d39aaaSBarry Smith           sum1 = xb[row];
3007f0d39aaaSBarry Smith           sum2 = xb[row-1];
3008f0d39aaaSBarry Smith           /* note that sum1 is associated with the second of the two rows */
3009f0d39aaaSBarry Smith           v2 = a->a + diag[row-1] + 2;
3010f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3011f0d39aaaSBarry Smith             i1    = idx[0];
3012f0d39aaaSBarry Smith             i2    = idx[1];
3013f0d39aaaSBarry Smith             idx  += 2;
3014f0d39aaaSBarry Smith             tmp0  = x[i1];
3015f0d39aaaSBarry Smith             tmp1  = x[i2];
3016f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3017f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3018f0d39aaaSBarry Smith           }
3019f0d39aaaSBarry Smith 
3020f0d39aaaSBarry Smith           if (n == sz-1) {
3021f0d39aaaSBarry Smith             tmp0  = x[*idx];
3022f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3023f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3024f0d39aaaSBarry Smith           }
3025f0d39aaaSBarry Smith           x[row--] = sum2*ibdiag[1] + sum1*ibdiag[3];
3026f0d39aaaSBarry Smith           x[row--] = sum2*ibdiag[0] + sum1*ibdiag[2];
3027f0d39aaaSBarry Smith           break;
3028f0d39aaaSBarry Smith         case 3:
3029f0d39aaaSBarry Smith 
3030f0d39aaaSBarry Smith           sum1 = xb[row];
3031f0d39aaaSBarry Smith           sum2 = xb[row-1];
3032f0d39aaaSBarry Smith           sum3 = xb[row-2];
3033f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3034f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3035f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3036f0d39aaaSBarry Smith             i1    = idx[0];
3037f0d39aaaSBarry Smith             i2    = idx[1];
3038f0d39aaaSBarry Smith             idx  += 2;
3039f0d39aaaSBarry Smith             tmp0  = x[i1];
3040f0d39aaaSBarry Smith             tmp1  = x[i2];
3041f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3042f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3043f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3044f0d39aaaSBarry Smith           }
3045f0d39aaaSBarry Smith 
3046f0d39aaaSBarry Smith           if (n == sz-1) {
3047f0d39aaaSBarry Smith             tmp0  = x[*idx];
3048f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3049f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3050f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3051f0d39aaaSBarry Smith           }
3052f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3053f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3054f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3055f0d39aaaSBarry Smith           break;
3056f0d39aaaSBarry Smith         case 4:
3057f0d39aaaSBarry Smith 
3058f0d39aaaSBarry Smith           sum1 = xb[row];
3059f0d39aaaSBarry Smith           sum2 = xb[row-1];
3060f0d39aaaSBarry Smith           sum3 = xb[row-2];
3061f0d39aaaSBarry Smith           sum4 = xb[row-3];
3062f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3063f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3064f0d39aaaSBarry Smith           v4   = a->a + diag[row-3] + 4;
3065f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3066f0d39aaaSBarry Smith             i1    = idx[0];
3067f0d39aaaSBarry Smith             i2    = idx[1];
3068f0d39aaaSBarry Smith             idx  += 2;
3069f0d39aaaSBarry Smith             tmp0  = x[i1];
3070f0d39aaaSBarry Smith             tmp1  = x[i2];
3071f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3072f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3073f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3074f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3075f0d39aaaSBarry Smith           }
3076f0d39aaaSBarry Smith 
3077f0d39aaaSBarry Smith           if (n == sz-1) {
3078f0d39aaaSBarry Smith             tmp0  = x[*idx];
3079f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3080f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3081f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3082f0d39aaaSBarry Smith             sum4 -= *v4*tmp0;
3083f0d39aaaSBarry Smith           }
3084f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3085f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3086f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3087f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3088f0d39aaaSBarry Smith           break;
3089f0d39aaaSBarry Smith         case 5:
3090f0d39aaaSBarry Smith 
3091f0d39aaaSBarry Smith           sum1 = xb[row];
3092f0d39aaaSBarry Smith           sum2 = xb[row-1];
3093f0d39aaaSBarry Smith           sum3 = xb[row-2];
3094f0d39aaaSBarry Smith           sum4 = xb[row-3];
3095f0d39aaaSBarry Smith           sum5 = xb[row-4];
3096f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3097f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3098f0d39aaaSBarry Smith           v4   = a->a + diag[row-3] + 4;
3099f0d39aaaSBarry Smith           v5   = a->a + diag[row-4] + 5;
3100f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3101f0d39aaaSBarry Smith             i1    = idx[0];
3102f0d39aaaSBarry Smith             i2    = idx[1];
3103f0d39aaaSBarry Smith             idx  += 2;
3104f0d39aaaSBarry Smith             tmp0  = x[i1];
3105f0d39aaaSBarry Smith             tmp1  = x[i2];
3106f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3107f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3108f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3109f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3110f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
3111f0d39aaaSBarry Smith           }
3112f0d39aaaSBarry Smith 
3113f0d39aaaSBarry Smith           if (n == sz-1) {
3114f0d39aaaSBarry Smith             tmp0  = x[*idx];
3115f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3116f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3117f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3118f0d39aaaSBarry Smith             sum4 -= *v4*tmp0;
3119f0d39aaaSBarry Smith             sum5 -= *v5*tmp0;
3120f0d39aaaSBarry Smith           }
3121f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3122f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3123f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3124f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3125f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
31268862d2efSBarry Smith           break;
31278862d2efSBarry Smith         default:
3128*98921bdaSJacob Faibussowitsch           SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
31298862d2efSBarry Smith         }
31302af78befSBarry Smith       }
31312af78befSBarry Smith 
31322af78befSBarry Smith       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
31332af78befSBarry Smith     }
31342af78befSBarry Smith     its--;
31355850ef23SBarry Smith   }
31365850ef23SBarry Smith   while (its--) {
31375850ef23SBarry Smith 
31385850ef23SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
3139d876e2b0SMark Adams       for (i=0, row=0, ibdiag = a->inode.ibdiag;
3140d876e2b0SMark Adams            i<m;
3141d876e2b0SMark Adams            row += sizes[i], ibdiag += sizes[i]*sizes[i], i++) {
31425850ef23SBarry Smith 
3143d876e2b0SMark Adams         sz  = diag[row] - ii[row];
31445850ef23SBarry Smith         v1  = a->a + ii[row];
31455850ef23SBarry Smith         idx = a->j + ii[row];
31465850ef23SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
31475850ef23SBarry Smith         switch (sizes[i]) {
31485850ef23SBarry Smith         case 1:
31495850ef23SBarry Smith           sum1 = b[row];
31505850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
31515850ef23SBarry Smith             i1    = idx[0];
31525850ef23SBarry Smith             i2    = idx[1];
31535850ef23SBarry Smith             idx  += 2;
31545850ef23SBarry Smith             tmp0  = x[i1];
31555850ef23SBarry Smith             tmp1  = x[i2];
31565850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
31575850ef23SBarry Smith           }
31585850ef23SBarry Smith           if (n == sz-1) {
3159d876e2b0SMark Adams             tmp0  = x[*idx++];
3160d876e2b0SMark Adams             sum1 -= *v1 * tmp0;
3161d876e2b0SMark Adams             v1++;
3162d876e2b0SMark Adams           }
3163d876e2b0SMark Adams           t[row]   = sum1;
3164d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 1;
3165d876e2b0SMark Adams           idx     = a->j + diag[row] + 1;
3166d876e2b0SMark Adams           v1 += 1;
3167d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3168d876e2b0SMark Adams             i1    = idx[0];
3169d876e2b0SMark Adams             i2    = idx[1];
3170d876e2b0SMark Adams             idx  += 2;
3171d876e2b0SMark Adams             tmp0  = x[i1];
3172d876e2b0SMark Adams             tmp1  = x[i2];
3173d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3174d876e2b0SMark Adams           }
3175d876e2b0SMark Adams           if (n == sz-1) {
3176d876e2b0SMark Adams             tmp0  = x[*idx++];
31775850ef23SBarry Smith             sum1 -= *v1 * tmp0;
31785850ef23SBarry Smith           }
31795850ef23SBarry Smith           /* in MatSOR_SeqAIJ this line would be
31805850ef23SBarry Smith            *
31815850ef23SBarry Smith            * x[row] = (1-omega)*x[row]+(sum1+(*bdiag++)*x[row])*(*ibdiag++);
31825850ef23SBarry Smith            *
31835850ef23SBarry Smith            * but omega == 1, so this becomes
31845850ef23SBarry Smith            *
3185d876e2b0SMark Adams            * x[row] = sum1*(*ibdiag++);
31865850ef23SBarry Smith            *
31875850ef23SBarry Smith            */
3188d876e2b0SMark Adams           x[row] = sum1*(*ibdiag);
31895850ef23SBarry Smith           break;
31905850ef23SBarry Smith         case 2:
31915850ef23SBarry Smith           v2   = a->a + ii[row+1];
31925850ef23SBarry Smith           sum1 = b[row];
31935850ef23SBarry Smith           sum2 = b[row+1];
31945850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
31955850ef23SBarry Smith             i1    = idx[0];
31965850ef23SBarry Smith             i2    = idx[1];
31975850ef23SBarry Smith             idx  += 2;
31985850ef23SBarry Smith             tmp0  = x[i1];
31995850ef23SBarry Smith             tmp1  = x[i2];
32005850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
32015850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
32025850ef23SBarry Smith           }
3203d876e2b0SMark Adams           if (n == sz-1) {
3204d876e2b0SMark Adams             tmp0  = x[*idx++];
3205d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3206d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3207d876e2b0SMark Adams             v1++; v2++;
3208d876e2b0SMark Adams           }
3209d876e2b0SMark Adams           t[row]   = sum1;
3210d876e2b0SMark Adams           t[row+1] = sum2;
3211d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 2;
3212d876e2b0SMark Adams           idx     = a->j + diag[row] + 2;
3213d876e2b0SMark Adams           v1 += 2;
3214d876e2b0SMark Adams           v2 += 2;
3215d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3216d876e2b0SMark Adams             i1    = idx[0];
3217d876e2b0SMark Adams             i2    = idx[1];
3218d876e2b0SMark Adams             idx  += 2;
3219d876e2b0SMark Adams             tmp0  = x[i1];
3220d876e2b0SMark Adams             tmp1  = x[i2];
3221d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3222d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3223d876e2b0SMark Adams           }
32245850ef23SBarry Smith           if (n == sz-1) {
32255850ef23SBarry Smith             tmp0  = x[*idx];
32265850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
32275850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
32285850ef23SBarry Smith           }
3229d876e2b0SMark Adams           x[row] = sum1*ibdiag[0] + sum2*ibdiag[2];
3230d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[3];
32315850ef23SBarry Smith           break;
32325850ef23SBarry Smith         case 3:
32335850ef23SBarry Smith           v2   = a->a + ii[row+1];
32345850ef23SBarry Smith           v3   = a->a + ii[row+2];
32355850ef23SBarry Smith           sum1 = b[row];
32365850ef23SBarry Smith           sum2 = b[row+1];
32375850ef23SBarry Smith           sum3 = b[row+2];
32385850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
32395850ef23SBarry Smith             i1    = idx[0];
32405850ef23SBarry Smith             i2    = idx[1];
32415850ef23SBarry Smith             idx  += 2;
32425850ef23SBarry Smith             tmp0  = x[i1];
32435850ef23SBarry Smith             tmp1  = x[i2];
32445850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
32455850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
32465850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
32475850ef23SBarry Smith           }
3248d876e2b0SMark Adams           if (n == sz-1) {
3249d876e2b0SMark Adams             tmp0  = x[*idx++];
3250d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3251d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3252d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3253d876e2b0SMark Adams             v1++; v2++; v3++;
3254d876e2b0SMark Adams           }
3255d876e2b0SMark Adams           t[row]   = sum1;
3256d876e2b0SMark Adams           t[row+1] = sum2;
3257d876e2b0SMark Adams           t[row+2] = sum3;
3258d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 3;
3259d876e2b0SMark Adams           idx     = a->j + diag[row] + 3;
3260d876e2b0SMark Adams           v1 += 3;
3261d876e2b0SMark Adams           v2 += 3;
3262d876e2b0SMark Adams           v3 += 3;
3263d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3264d876e2b0SMark Adams             i1    = idx[0];
3265d876e2b0SMark Adams             i2    = idx[1];
3266d876e2b0SMark Adams             idx  += 2;
3267d876e2b0SMark Adams             tmp0  = x[i1];
3268d876e2b0SMark Adams             tmp1  = x[i2];
3269d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3270d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3271d876e2b0SMark Adams             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3272d876e2b0SMark Adams           }
32735850ef23SBarry Smith           if (n == sz-1) {
32745850ef23SBarry Smith             tmp0  = x[*idx];
32755850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
32765850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
32775850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
32785850ef23SBarry Smith           }
3279d876e2b0SMark Adams           x[row] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
3280d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
3281d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
32825850ef23SBarry Smith           break;
32835850ef23SBarry Smith         case 4:
32845850ef23SBarry Smith           v2   = a->a + ii[row+1];
32855850ef23SBarry Smith           v3   = a->a + ii[row+2];
32865850ef23SBarry Smith           v4   = a->a + ii[row+3];
32875850ef23SBarry Smith           sum1 = b[row];
32885850ef23SBarry Smith           sum2 = b[row+1];
32895850ef23SBarry Smith           sum3 = b[row+2];
32905850ef23SBarry Smith           sum4 = b[row+3];
32915850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
32925850ef23SBarry Smith             i1    = idx[0];
32935850ef23SBarry Smith             i2    = idx[1];
32945850ef23SBarry Smith             idx  += 2;
32955850ef23SBarry Smith             tmp0  = x[i1];
32965850ef23SBarry Smith             tmp1  = x[i2];
32975850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
32985850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
32995850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
33005850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
33015850ef23SBarry Smith           }
3302d876e2b0SMark Adams           if (n == sz-1) {
3303d876e2b0SMark Adams             tmp0  = x[*idx++];
3304d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3305d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3306d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3307d876e2b0SMark Adams             sum4 -= v4[0] * tmp0;
3308d876e2b0SMark Adams             v1++; v2++; v3++; v4++;
3309d876e2b0SMark Adams           }
3310d876e2b0SMark Adams           t[row]   = sum1;
3311d876e2b0SMark Adams           t[row+1] = sum2;
3312d876e2b0SMark Adams           t[row+2] = sum3;
3313d876e2b0SMark Adams           t[row+3] = sum4;
3314d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 4;
3315d876e2b0SMark Adams           idx     = a->j + diag[row] + 4;
3316d876e2b0SMark Adams           v1 += 4;
3317d876e2b0SMark Adams           v2 += 4;
3318d876e2b0SMark Adams           v3 += 4;
3319d876e2b0SMark Adams           v4 += 4;
3320d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3321d876e2b0SMark Adams             i1    = idx[0];
3322d876e2b0SMark Adams             i2    = idx[1];
3323d876e2b0SMark Adams             idx  += 2;
3324d876e2b0SMark Adams             tmp0  = x[i1];
3325d876e2b0SMark Adams             tmp1  = x[i2];
3326d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3327d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3328d876e2b0SMark Adams             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3329d876e2b0SMark Adams             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3330d876e2b0SMark Adams           }
33315850ef23SBarry Smith           if (n == sz-1) {
33325850ef23SBarry Smith             tmp0  = x[*idx];
33335850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
33345850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
33355850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
33365850ef23SBarry Smith             sum4 -= v4[0] * tmp0;
33375850ef23SBarry Smith           }
3338d876e2b0SMark Adams           x[row] =   sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
3339d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
3340d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
3341d876e2b0SMark Adams           x[row+3] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
33425850ef23SBarry Smith           break;
33435850ef23SBarry Smith         case 5:
33445850ef23SBarry Smith           v2   = a->a + ii[row+1];
33455850ef23SBarry Smith           v3   = a->a + ii[row+2];
33465850ef23SBarry Smith           v4   = a->a + ii[row+3];
33475850ef23SBarry Smith           v5   = a->a + ii[row+4];
33485850ef23SBarry Smith           sum1 = b[row];
33495850ef23SBarry Smith           sum2 = b[row+1];
33505850ef23SBarry Smith           sum3 = b[row+2];
33515850ef23SBarry Smith           sum4 = b[row+3];
33525850ef23SBarry Smith           sum5 = b[row+4];
33535850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
33545850ef23SBarry Smith             i1    = idx[0];
33555850ef23SBarry Smith             i2    = idx[1];
33565850ef23SBarry Smith             idx  += 2;
33575850ef23SBarry Smith             tmp0  = x[i1];
33585850ef23SBarry Smith             tmp1  = x[i2];
33595850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
33605850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
33615850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
33625850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
33635850ef23SBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
33645850ef23SBarry Smith           }
33655850ef23SBarry Smith           if (n == sz-1) {
3366d876e2b0SMark Adams             tmp0  = x[*idx++];
33675850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
33685850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
33695850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
33705850ef23SBarry Smith             sum4 -= v4[0] * tmp0;
33715850ef23SBarry Smith             sum5 -= v5[0] * tmp0;
3372d876e2b0SMark Adams             v1++; v2++; v3++; v4++; v5++;
33735850ef23SBarry Smith           }
3374d876e2b0SMark Adams           t[row]   = sum1;
3375d876e2b0SMark Adams           t[row+1] = sum2;
3376d876e2b0SMark Adams           t[row+2] = sum3;
3377d876e2b0SMark Adams           t[row+3] = sum4;
3378d876e2b0SMark Adams           t[row+4] = sum5;
3379d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 5;
3380d876e2b0SMark Adams           idx     = a->j + diag[row] + 5;
3381d876e2b0SMark Adams           v1 += 5;
3382d876e2b0SMark Adams           v2 += 5;
3383d876e2b0SMark Adams           v3 += 5;
3384d876e2b0SMark Adams           v4 += 5;
3385d876e2b0SMark Adams           v5 += 5;
33865850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
33875850ef23SBarry Smith             i1    = idx[0];
33885850ef23SBarry Smith             i2    = idx[1];
33895850ef23SBarry Smith             idx  += 2;
33905850ef23SBarry Smith             tmp0  = x[i1];
33915850ef23SBarry Smith             tmp1  = x[i2];
33925850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
33935850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
33945850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
33955850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
33965850ef23SBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
33975850ef23SBarry Smith           }
33985850ef23SBarry Smith           if (n == sz-1) {
33995850ef23SBarry Smith             tmp0  = x[*idx];
3400d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3401d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3402d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3403d876e2b0SMark Adams             sum4 -= v4[0] * tmp0;
3404d876e2b0SMark Adams             sum5 -= v5[0] * tmp0;
34055850ef23SBarry Smith           }
3406d876e2b0SMark Adams           x[row]   = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
3407d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
3408d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
3409d876e2b0SMark Adams           x[row+3] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
3410d876e2b0SMark Adams           x[row+4] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
3411d876e2b0SMark Adams           break;
3412d876e2b0SMark Adams         default:
3413*98921bdaSJacob Faibussowitsch           SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
3414d876e2b0SMark Adams         }
3415d876e2b0SMark Adams       }
3416d876e2b0SMark Adams       xb   = t;
3417d876e2b0SMark Adams       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);  /* undercounts diag inverse */
3418d876e2b0SMark Adams     } else xb = b;
3419d876e2b0SMark Adams 
3420d876e2b0SMark Adams     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
3421d876e2b0SMark Adams 
3422d876e2b0SMark Adams       ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
3423d876e2b0SMark Adams       for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
3424d876e2b0SMark Adams         ibdiag -= sizes[i]*sizes[i];
3425d876e2b0SMark Adams 
3426d876e2b0SMark Adams         /* set RHS */
3427d876e2b0SMark Adams         if (xb == b) {
3428d876e2b0SMark Adams           /* whole (old way) */
3429d876e2b0SMark Adams           sz      = ii[row+1] - ii[row];
3430d876e2b0SMark Adams           idx     = a->j + ii[row];
3431d876e2b0SMark Adams           switch (sizes[i]) {
3432d876e2b0SMark Adams           case 5:
3433d876e2b0SMark Adams             v5      = a->a + ii[row-4];
3434d876e2b0SMark Adams           case 4: /* fall through */
3435d876e2b0SMark Adams             v4      = a->a + ii[row-3];
3436d876e2b0SMark Adams           case 3:
3437d876e2b0SMark Adams             v3      = a->a + ii[row-2];
3438d876e2b0SMark Adams           case 2:
3439d876e2b0SMark Adams             v2      = a->a + ii[row-1];
3440d876e2b0SMark Adams           case 1:
3441d876e2b0SMark Adams             v1      = a->a + ii[row];
3442d876e2b0SMark Adams             break;
3443d876e2b0SMark Adams           default:
3444*98921bdaSJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
3445d876e2b0SMark Adams           }
3446d876e2b0SMark Adams         } else {
3447d876e2b0SMark Adams           /* upper, no diag */
3448d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 1;
3449d876e2b0SMark Adams           idx     = a->j + diag[row] + 1;
3450d876e2b0SMark Adams           switch (sizes[i]) {
3451d876e2b0SMark Adams           case 5:
3452d876e2b0SMark Adams             v5      = a->a + diag[row-4] + 5;
3453d876e2b0SMark Adams           case 4: /* fall through */
3454d876e2b0SMark Adams             v4      = a->a + diag[row-3] + 4;
3455d876e2b0SMark Adams           case 3:
3456d876e2b0SMark Adams             v3      = a->a + diag[row-2] + 3;
3457d876e2b0SMark Adams           case 2:
3458d876e2b0SMark Adams             v2      = a->a + diag[row-1] + 2;
3459d876e2b0SMark Adams           case 1:
3460d876e2b0SMark Adams             v1      = a->a + diag[row] + 1;
3461d876e2b0SMark Adams           }
3462d876e2b0SMark Adams         }
3463d876e2b0SMark Adams         /* set sum */
3464d876e2b0SMark Adams         switch (sizes[i]) {
3465d876e2b0SMark Adams         case 5:
3466d876e2b0SMark Adams           sum5 = xb[row-4];
3467d876e2b0SMark Adams         case 4: /* fall through */
3468d876e2b0SMark Adams           sum4 = xb[row-3];
3469d876e2b0SMark Adams         case 3:
3470d876e2b0SMark Adams           sum3 = xb[row-2];
3471d876e2b0SMark Adams         case 2:
3472d876e2b0SMark Adams           sum2 = xb[row-1];
3473d876e2b0SMark Adams         case 1:
3474d876e2b0SMark Adams           /* note that sum1 is associated with the last row */
3475d876e2b0SMark Adams           sum1 = xb[row];
3476d876e2b0SMark Adams         }
3477d876e2b0SMark Adams         /* do sums */
3478d876e2b0SMark Adams         for (n = 0; n<sz-1; n+=2) {
3479d876e2b0SMark Adams             i1    = idx[0];
3480d876e2b0SMark Adams             i2    = idx[1];
3481d876e2b0SMark Adams             idx  += 2;
3482d876e2b0SMark Adams             tmp0  = x[i1];
3483d876e2b0SMark Adams             tmp1  = x[i2];
3484d876e2b0SMark Adams             switch (sizes[i]) {
3485d876e2b0SMark Adams             case 5:
3486d876e2b0SMark Adams               sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
3487d876e2b0SMark Adams             case 4: /* fall through */
3488d876e2b0SMark Adams               sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3489d876e2b0SMark Adams             case 3:
3490d876e2b0SMark Adams               sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3491d876e2b0SMark Adams             case 2:
3492d876e2b0SMark Adams               sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3493d876e2b0SMark Adams             case 1:
3494d876e2b0SMark Adams               sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3495d876e2b0SMark Adams             }
3496d876e2b0SMark Adams         }
3497d876e2b0SMark Adams         /* ragged edge */
3498d876e2b0SMark Adams         if (n == sz-1) {
3499d876e2b0SMark Adams           tmp0  = x[*idx];
3500d876e2b0SMark Adams           switch (sizes[i]) {
3501d876e2b0SMark Adams           case 5:
3502d876e2b0SMark Adams             sum5 -= *v5*tmp0;
3503d876e2b0SMark Adams           case 4: /* fall through */
3504d876e2b0SMark Adams             sum4 -= *v4*tmp0;
3505d876e2b0SMark Adams           case 3:
3506d876e2b0SMark Adams             sum3 -= *v3*tmp0;
3507d876e2b0SMark Adams           case 2:
3508d876e2b0SMark Adams             sum2 -= *v2*tmp0;
3509d876e2b0SMark Adams           case 1:
3510d876e2b0SMark Adams             sum1 -= *v1*tmp0;
3511d876e2b0SMark Adams           }
3512d876e2b0SMark Adams         }
3513d876e2b0SMark Adams         /* update */
3514d876e2b0SMark Adams         if (xb == b) {
3515d876e2b0SMark Adams           /* whole (old way) w/ diag */
3516d876e2b0SMark Adams           switch (sizes[i]) {
3517d876e2b0SMark Adams           case 5:
35185850ef23SBarry Smith             x[row--] += sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
35195850ef23SBarry Smith             x[row--] += sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
35205850ef23SBarry Smith             x[row--] += sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
35215850ef23SBarry Smith             x[row--] += sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
35225850ef23SBarry Smith             x[row--] += sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
35235850ef23SBarry Smith             break;
3524d876e2b0SMark Adams           case 4:
3525d876e2b0SMark Adams             x[row--] += sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3526d876e2b0SMark Adams             x[row--] += sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3527d876e2b0SMark Adams             x[row--] += sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3528d876e2b0SMark Adams             x[row--] += sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3529d876e2b0SMark Adams             break;
3530d876e2b0SMark Adams           case 3:
3531d876e2b0SMark Adams             x[row--] += sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3532d876e2b0SMark Adams             x[row--] += sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3533d876e2b0SMark Adams             x[row--] += sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3534d876e2b0SMark Adams             break;
3535d876e2b0SMark Adams           case 2:
3536d876e2b0SMark Adams             x[row--] += sum2*ibdiag[1] + sum1*ibdiag[3];
3537d876e2b0SMark Adams             x[row--] += sum2*ibdiag[0] + sum1*ibdiag[2];
3538d876e2b0SMark Adams             break;
3539d876e2b0SMark Adams           case 1:
3540d876e2b0SMark Adams             x[row--] += sum1*(*ibdiag);
3541d876e2b0SMark Adams             break;
3542d876e2b0SMark Adams           }
3543d876e2b0SMark Adams         } else {
3544d876e2b0SMark Adams           /* no diag so set =  */
3545d876e2b0SMark Adams           switch (sizes[i]) {
3546d876e2b0SMark Adams           case 5:
3547d876e2b0SMark Adams             x[row--] = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3548d876e2b0SMark Adams             x[row--] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3549d876e2b0SMark Adams             x[row--] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3550d876e2b0SMark Adams             x[row--] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3551d876e2b0SMark Adams             x[row--] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
3552d876e2b0SMark Adams             break;
3553d876e2b0SMark Adams           case 4:
3554d876e2b0SMark Adams             x[row--] = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3555d876e2b0SMark Adams             x[row--] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3556d876e2b0SMark Adams             x[row--] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3557d876e2b0SMark Adams             x[row--] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3558d876e2b0SMark Adams             break;
3559d876e2b0SMark Adams           case 3:
3560d876e2b0SMark Adams             x[row--] = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3561d876e2b0SMark Adams             x[row--] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3562d876e2b0SMark Adams             x[row--] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3563d876e2b0SMark Adams             break;
3564d876e2b0SMark Adams           case 2:
3565d876e2b0SMark Adams             x[row--] = sum2*ibdiag[1] + sum1*ibdiag[3];
3566d876e2b0SMark Adams             x[row--] = sum2*ibdiag[0] + sum1*ibdiag[2];
3567d876e2b0SMark Adams             break;
3568d876e2b0SMark Adams           case 1:
3569d876e2b0SMark Adams             x[row--] = sum1*(*ibdiag);
3570d876e2b0SMark Adams             break;
35715850ef23SBarry Smith           }
35725850ef23SBarry Smith         }
3573d876e2b0SMark Adams       }
3574d876e2b0SMark Adams       if (xb == b) {
35755850ef23SBarry Smith         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
3576d876e2b0SMark Adams       } else {
3577d876e2b0SMark Adams         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper, undercounts diag inverse */
3578d876e2b0SMark Adams       }
35795850ef23SBarry Smith     }
35802af78befSBarry Smith   }
358189c6957cSBarry Smith   if (flag & SOR_EISENSTAT) {
358289c6957cSBarry Smith     /*
358389c6957cSBarry Smith           Apply  (U + D)^-1  where D is now the block diagonal
358489c6957cSBarry Smith     */
358589c6957cSBarry Smith     ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
358689c6957cSBarry Smith     for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
358789c6957cSBarry Smith       ibdiag -= sizes[i]*sizes[i];
358889c6957cSBarry Smith       sz      = ii[row+1] - diag[row] - 1;
358989c6957cSBarry Smith       v1      = a->a + diag[row] + 1;
359089c6957cSBarry Smith       idx     = a->j + diag[row] + 1;
35914108e4d5SBarry Smith       /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
359289c6957cSBarry Smith       switch (sizes[i]) {
359389c6957cSBarry Smith       case 1:
359489c6957cSBarry Smith 
359589c6957cSBarry Smith         sum1 = b[row];
359689c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
359789c6957cSBarry Smith           i1    = idx[0];
359889c6957cSBarry Smith           i2    = idx[1];
359989c6957cSBarry Smith           idx  += 2;
360089c6957cSBarry Smith           tmp0  = x[i1];
360189c6957cSBarry Smith           tmp1  = x[i2];
360289c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
360389c6957cSBarry Smith         }
360489c6957cSBarry Smith 
360589c6957cSBarry Smith         if (n == sz-1) {
360689c6957cSBarry Smith           tmp0  = x[*idx];
360789c6957cSBarry Smith           sum1 -= *v1*tmp0;
360889c6957cSBarry Smith         }
3609938d4eb3SBarry Smith         x[row] = sum1*(*ibdiag);row--;
361089c6957cSBarry Smith         break;
361189c6957cSBarry Smith 
361289c6957cSBarry Smith       case 2:
361389c6957cSBarry Smith 
361489c6957cSBarry Smith         sum1 = b[row];
361589c6957cSBarry Smith         sum2 = b[row-1];
361689c6957cSBarry Smith         /* note that sum1 is associated with the second of the two rows */
361789c6957cSBarry Smith         v2 = a->a + diag[row-1] + 2;
361889c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
361989c6957cSBarry Smith           i1    = idx[0];
362089c6957cSBarry Smith           i2    = idx[1];
362189c6957cSBarry Smith           idx  += 2;
362289c6957cSBarry Smith           tmp0  = x[i1];
362389c6957cSBarry Smith           tmp1  = x[i2];
362489c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
362589c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
362689c6957cSBarry Smith         }
362789c6957cSBarry Smith 
362889c6957cSBarry Smith         if (n == sz-1) {
362989c6957cSBarry Smith           tmp0  = x[*idx];
363089c6957cSBarry Smith           sum1 -= *v1*tmp0;
363189c6957cSBarry Smith           sum2 -= *v2*tmp0;
363289c6957cSBarry Smith         }
3633938d4eb3SBarry Smith         x[row]   = sum2*ibdiag[1] + sum1*ibdiag[3];
3634938d4eb3SBarry Smith         x[row-1] = sum2*ibdiag[0] + sum1*ibdiag[2];
3635938d4eb3SBarry Smith         row     -= 2;
363689c6957cSBarry Smith         break;
363789c6957cSBarry Smith       case 3:
363889c6957cSBarry Smith 
363989c6957cSBarry Smith         sum1 = b[row];
364089c6957cSBarry Smith         sum2 = b[row-1];
364189c6957cSBarry Smith         sum3 = b[row-2];
364289c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
364389c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
364489c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
364589c6957cSBarry Smith           i1    = idx[0];
364689c6957cSBarry Smith           i2    = idx[1];
364789c6957cSBarry Smith           idx  += 2;
364889c6957cSBarry Smith           tmp0  = x[i1];
364989c6957cSBarry Smith           tmp1  = x[i2];
365089c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
365189c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
365289c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
365389c6957cSBarry Smith         }
365489c6957cSBarry Smith 
365589c6957cSBarry Smith         if (n == sz-1) {
365689c6957cSBarry Smith           tmp0  = x[*idx];
365789c6957cSBarry Smith           sum1 -= *v1*tmp0;
365889c6957cSBarry Smith           sum2 -= *v2*tmp0;
365989c6957cSBarry Smith           sum3 -= *v3*tmp0;
366089c6957cSBarry Smith         }
3661938d4eb3SBarry Smith         x[row]   = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3662938d4eb3SBarry Smith         x[row-1] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3663938d4eb3SBarry Smith         x[row-2] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3664938d4eb3SBarry Smith         row     -= 3;
366589c6957cSBarry Smith         break;
366689c6957cSBarry Smith       case 4:
366789c6957cSBarry Smith 
366889c6957cSBarry Smith         sum1 = b[row];
366989c6957cSBarry Smith         sum2 = b[row-1];
367089c6957cSBarry Smith         sum3 = b[row-2];
367189c6957cSBarry Smith         sum4 = b[row-3];
367289c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
367389c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
367489c6957cSBarry Smith         v4   = a->a + diag[row-3] + 4;
367589c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
367689c6957cSBarry Smith           i1    = idx[0];
367789c6957cSBarry Smith           i2    = idx[1];
367889c6957cSBarry Smith           idx  += 2;
367989c6957cSBarry Smith           tmp0  = x[i1];
368089c6957cSBarry Smith           tmp1  = x[i2];
368189c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
368289c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
368389c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
368489c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
368589c6957cSBarry Smith         }
368689c6957cSBarry Smith 
368789c6957cSBarry Smith         if (n == sz-1) {
368889c6957cSBarry Smith           tmp0  = x[*idx];
368989c6957cSBarry Smith           sum1 -= *v1*tmp0;
369089c6957cSBarry Smith           sum2 -= *v2*tmp0;
369189c6957cSBarry Smith           sum3 -= *v3*tmp0;
369289c6957cSBarry Smith           sum4 -= *v4*tmp0;
369389c6957cSBarry Smith         }
3694938d4eb3SBarry Smith         x[row]   = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3695938d4eb3SBarry Smith         x[row-1] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3696938d4eb3SBarry Smith         x[row-2] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3697938d4eb3SBarry Smith         x[row-3] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3698938d4eb3SBarry Smith         row     -= 4;
369989c6957cSBarry Smith         break;
370089c6957cSBarry Smith       case 5:
370189c6957cSBarry Smith 
370289c6957cSBarry Smith         sum1 = b[row];
370389c6957cSBarry Smith         sum2 = b[row-1];
370489c6957cSBarry Smith         sum3 = b[row-2];
370589c6957cSBarry Smith         sum4 = b[row-3];
370689c6957cSBarry Smith         sum5 = b[row-4];
370789c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
370889c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
370989c6957cSBarry Smith         v4   = a->a + diag[row-3] + 4;
371089c6957cSBarry Smith         v5   = a->a + diag[row-4] + 5;
371189c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
371289c6957cSBarry Smith           i1    = idx[0];
371389c6957cSBarry Smith           i2    = idx[1];
371489c6957cSBarry Smith           idx  += 2;
371589c6957cSBarry Smith           tmp0  = x[i1];
371689c6957cSBarry Smith           tmp1  = x[i2];
371789c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
371889c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
371989c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
372089c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
372189c6957cSBarry Smith           sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
372289c6957cSBarry Smith         }
372389c6957cSBarry Smith 
372489c6957cSBarry Smith         if (n == sz-1) {
372589c6957cSBarry Smith           tmp0  = x[*idx];
372689c6957cSBarry Smith           sum1 -= *v1*tmp0;
372789c6957cSBarry Smith           sum2 -= *v2*tmp0;
372889c6957cSBarry Smith           sum3 -= *v3*tmp0;
372989c6957cSBarry Smith           sum4 -= *v4*tmp0;
373089c6957cSBarry Smith           sum5 -= *v5*tmp0;
373189c6957cSBarry Smith         }
3732938d4eb3SBarry Smith         x[row]   = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3733938d4eb3SBarry Smith         x[row-1] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3734938d4eb3SBarry Smith         x[row-2] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3735938d4eb3SBarry Smith         x[row-3] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3736938d4eb3SBarry Smith         x[row-4] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
3737938d4eb3SBarry Smith         row     -= 5;
373889c6957cSBarry Smith         break;
373989c6957cSBarry Smith       default:
3740*98921bdaSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
374189c6957cSBarry Smith       }
374289c6957cSBarry Smith     }
374389c6957cSBarry Smith     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
374489c6957cSBarry Smith 
374589c6957cSBarry Smith     /*
374689c6957cSBarry Smith            t = b - D x    where D is the block diagonal
374789c6957cSBarry Smith     */
374889c6957cSBarry Smith     cnt = 0;
374989c6957cSBarry Smith     for (i=0, row=0; i<m; i++) {
375089c6957cSBarry Smith       switch (sizes[i]) {
375189c6957cSBarry Smith       case 1:
375289c6957cSBarry Smith         t[row] = b[row] - bdiag[cnt++]*x[row]; row++;
375389c6957cSBarry Smith         break;
375489c6957cSBarry Smith       case 2:
375589c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1];
375689c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+2];
375789c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+3];
375889c6957cSBarry Smith         t[row]   = b[row] - tmp1;
375989c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2; row += 2;
376089c6957cSBarry Smith         cnt     += 4;
376189c6957cSBarry Smith         break;
376289c6957cSBarry Smith       case 3:
376389c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2];
376489c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+3] + x3*bdiag[cnt+6];
376589c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+4] + x3*bdiag[cnt+7];
376689c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+5] + x3*bdiag[cnt+8];
376789c6957cSBarry Smith         t[row]   = b[row] - tmp1;
376889c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
376989c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3; row += 3;
377089c6957cSBarry Smith         cnt     += 9;
377189c6957cSBarry Smith         break;
377289c6957cSBarry Smith       case 4:
377389c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2]; x4 = x[row+3];
377489c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+4] + x3*bdiag[cnt+8] + x4*bdiag[cnt+12];
377589c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+5] + x3*bdiag[cnt+9] + x4*bdiag[cnt+13];
377689c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+6] + x3*bdiag[cnt+10] + x4*bdiag[cnt+14];
377789c6957cSBarry Smith         tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+7] + x3*bdiag[cnt+11] + x4*bdiag[cnt+15];
377889c6957cSBarry Smith         t[row]   = b[row] - tmp1;
377989c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
378089c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3;
378189c6957cSBarry Smith         t[row+3] = b[row+3] - tmp4; row += 4;
378289c6957cSBarry Smith         cnt     += 16;
378389c6957cSBarry Smith         break;
378489c6957cSBarry Smith       case 5:
378589c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2]; x4 = x[row+3]; x5 = x[row+4];
378689c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+5] + x3*bdiag[cnt+10] + x4*bdiag[cnt+15] + x5*bdiag[cnt+20];
378789c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+6] + x3*bdiag[cnt+11] + x4*bdiag[cnt+16] + x5*bdiag[cnt+21];
378889c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+7] + x3*bdiag[cnt+12] + x4*bdiag[cnt+17] + x5*bdiag[cnt+22];
378989c6957cSBarry Smith         tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+8] + x3*bdiag[cnt+13] + x4*bdiag[cnt+18] + x5*bdiag[cnt+23];
379089c6957cSBarry Smith         tmp5     = x1*bdiag[cnt+4] + x2*bdiag[cnt+9] + x3*bdiag[cnt+14] + x4*bdiag[cnt+19] + x5*bdiag[cnt+24];
379189c6957cSBarry Smith         t[row]   = b[row] - tmp1;
379289c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
379389c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3;
379489c6957cSBarry Smith         t[row+3] = b[row+3] - tmp4;
379589c6957cSBarry Smith         t[row+4] = b[row+4] - tmp5;row += 5;
379689c6957cSBarry Smith         cnt     += 25;
379789c6957cSBarry Smith         break;
379889c6957cSBarry Smith       default:
3799*98921bdaSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
380089c6957cSBarry Smith       }
380189c6957cSBarry Smith     }
380289c6957cSBarry Smith     ierr = PetscLogFlops(m);CHKERRQ(ierr);
380389c6957cSBarry Smith 
380489c6957cSBarry Smith     /*
380589c6957cSBarry Smith           Apply (L + D)^-1 where D is the block diagonal
380689c6957cSBarry Smith     */
380789c6957cSBarry Smith     for (i=0, row=0; i<m; i++) {
380889c6957cSBarry Smith       sz  = diag[row] - ii[row];
380989c6957cSBarry Smith       v1  = a->a + ii[row];
381089c6957cSBarry Smith       idx = a->j + ii[row];
38114108e4d5SBarry Smith       /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
381289c6957cSBarry Smith       switch (sizes[i]) {
381389c6957cSBarry Smith       case 1:
381489c6957cSBarry Smith 
381589c6957cSBarry Smith         sum1 = t[row];
381689c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
381789c6957cSBarry Smith           i1    = idx[0];
381889c6957cSBarry Smith           i2    = idx[1];
381989c6957cSBarry Smith           idx  += 2;
382089c6957cSBarry Smith           tmp0  = t[i1];
382189c6957cSBarry Smith           tmp1  = t[i2];
382289c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
382389c6957cSBarry Smith         }
382489c6957cSBarry Smith 
382589c6957cSBarry Smith         if (n == sz-1) {
382689c6957cSBarry Smith           tmp0  = t[*idx];
382789c6957cSBarry Smith           sum1 -= *v1 * tmp0;
382889c6957cSBarry Smith         }
382989c6957cSBarry Smith         x[row] += t[row] = sum1*(*ibdiag++); row++;
383089c6957cSBarry Smith         break;
383189c6957cSBarry Smith       case 2:
383289c6957cSBarry Smith         v2   = a->a + ii[row+1];
383389c6957cSBarry Smith         sum1 = t[row];
383489c6957cSBarry Smith         sum2 = t[row+1];
383589c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
383689c6957cSBarry Smith           i1    = idx[0];
383789c6957cSBarry Smith           i2    = idx[1];
383889c6957cSBarry Smith           idx  += 2;
383989c6957cSBarry Smith           tmp0  = t[i1];
384089c6957cSBarry Smith           tmp1  = t[i2];
384189c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
384289c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
384389c6957cSBarry Smith         }
384489c6957cSBarry Smith 
384589c6957cSBarry Smith         if (n == sz-1) {
384689c6957cSBarry Smith           tmp0  = t[*idx];
384789c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
384889c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
384989c6957cSBarry Smith         }
385089c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[2];
385189c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[3];
385289c6957cSBarry Smith         ibdiag   += 4; row += 2;
385389c6957cSBarry Smith         break;
385489c6957cSBarry Smith       case 3:
385589c6957cSBarry Smith         v2   = a->a + ii[row+1];
385689c6957cSBarry Smith         v3   = a->a + ii[row+2];
385789c6957cSBarry Smith         sum1 = t[row];
385889c6957cSBarry Smith         sum2 = t[row+1];
385989c6957cSBarry Smith         sum3 = t[row+2];
386089c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
386189c6957cSBarry Smith           i1    = idx[0];
386289c6957cSBarry Smith           i2    = idx[1];
386389c6957cSBarry Smith           idx  += 2;
386489c6957cSBarry Smith           tmp0  = t[i1];
386589c6957cSBarry Smith           tmp1  = t[i2];
386689c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
386789c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
386889c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
386989c6957cSBarry Smith         }
387089c6957cSBarry Smith 
387189c6957cSBarry Smith         if (n == sz-1) {
387289c6957cSBarry Smith           tmp0  = t[*idx];
387389c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
387489c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
387589c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
387689c6957cSBarry Smith         }
387789c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
387889c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
387989c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
388089c6957cSBarry Smith         ibdiag   += 9; row += 3;
388189c6957cSBarry Smith         break;
388289c6957cSBarry Smith       case 4:
388389c6957cSBarry Smith         v2   = a->a + ii[row+1];
388489c6957cSBarry Smith         v3   = a->a + ii[row+2];
388589c6957cSBarry Smith         v4   = a->a + ii[row+3];
388689c6957cSBarry Smith         sum1 = t[row];
388789c6957cSBarry Smith         sum2 = t[row+1];
388889c6957cSBarry Smith         sum3 = t[row+2];
388989c6957cSBarry Smith         sum4 = t[row+3];
389089c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
389189c6957cSBarry Smith           i1    = idx[0];
389289c6957cSBarry Smith           i2    = idx[1];
389389c6957cSBarry Smith           idx  += 2;
389489c6957cSBarry Smith           tmp0  = t[i1];
389589c6957cSBarry Smith           tmp1  = t[i2];
389689c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
389789c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
389889c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
389989c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
390089c6957cSBarry Smith         }
390189c6957cSBarry Smith 
390289c6957cSBarry Smith         if (n == sz-1) {
390389c6957cSBarry Smith           tmp0  = t[*idx];
390489c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
390589c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
390689c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
390789c6957cSBarry Smith           sum4 -= v4[0] * tmp0;
390889c6957cSBarry Smith         }
390989c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
391089c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
391189c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
391289c6957cSBarry Smith         x[row+3] += t[row+3] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
391389c6957cSBarry Smith         ibdiag   += 16; row += 4;
391489c6957cSBarry Smith         break;
391589c6957cSBarry Smith       case 5:
391689c6957cSBarry Smith         v2   = a->a + ii[row+1];
391789c6957cSBarry Smith         v3   = a->a + ii[row+2];
391889c6957cSBarry Smith         v4   = a->a + ii[row+3];
391989c6957cSBarry Smith         v5   = a->a + ii[row+4];
392089c6957cSBarry Smith         sum1 = t[row];
392189c6957cSBarry Smith         sum2 = t[row+1];
392289c6957cSBarry Smith         sum3 = t[row+2];
392389c6957cSBarry Smith         sum4 = t[row+3];
392489c6957cSBarry Smith         sum5 = t[row+4];
392589c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
392689c6957cSBarry Smith           i1    = idx[0];
392789c6957cSBarry Smith           i2    = idx[1];
392889c6957cSBarry Smith           idx  += 2;
392989c6957cSBarry Smith           tmp0  = t[i1];
393089c6957cSBarry Smith           tmp1  = t[i2];
393189c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
393289c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
393389c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
393489c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
393589c6957cSBarry Smith           sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
393689c6957cSBarry Smith         }
393789c6957cSBarry Smith 
393889c6957cSBarry Smith         if (n == sz-1) {
393989c6957cSBarry Smith           tmp0  = t[*idx];
394089c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
394189c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
394289c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
394389c6957cSBarry Smith           sum4 -= v4[0] * tmp0;
394489c6957cSBarry Smith           sum5 -= v5[0] * tmp0;
394589c6957cSBarry Smith         }
394689c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
394789c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
394889c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
394989c6957cSBarry Smith         x[row+3] += t[row+3] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
395089c6957cSBarry Smith         x[row+4] += t[row+4] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
395189c6957cSBarry Smith         ibdiag   += 25; row += 5;
395289c6957cSBarry Smith         break;
395389c6957cSBarry Smith       default:
3954*98921bdaSJacob Faibussowitsch         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
395589c6957cSBarry Smith       }
395689c6957cSBarry Smith     }
395789c6957cSBarry Smith     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
39585850ef23SBarry Smith   }
39592af78befSBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
39603649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3961365a8a9eSBarry Smith   PetscFunctionReturn(0);
39622af78befSBarry Smith }
39632af78befSBarry Smith 
39644108e4d5SBarry Smith PetscErrorCode MatMultDiagonalBlock_SeqAIJ_Inode(Mat A,Vec bb,Vec xx)
396589c6957cSBarry Smith {
396689c6957cSBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
396789c6957cSBarry Smith   PetscScalar       *x,tmp1,tmp2,tmp3,tmp4,tmp5,x1,x2,x3,x4,x5;
396889c6957cSBarry Smith   const MatScalar   *bdiag = a->inode.bdiag;
396989c6957cSBarry Smith   const PetscScalar *b;
397089c6957cSBarry Smith   PetscErrorCode    ierr;
397189c6957cSBarry Smith   PetscInt          m      = a->inode.node_count,cnt = 0,i,row;
397289c6957cSBarry Smith   const PetscInt    *sizes = a->inode.size;
39732af78befSBarry Smith 
397489c6957cSBarry Smith   PetscFunctionBegin;
3975b215bc84SStefano Zampini   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
397689c6957cSBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
39773649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
397889c6957cSBarry Smith   cnt  = 0;
397989c6957cSBarry Smith   for (i=0, row=0; i<m; i++) {
398089c6957cSBarry Smith     switch (sizes[i]) {
398189c6957cSBarry Smith     case 1:
398289c6957cSBarry Smith       x[row] = b[row]*bdiag[cnt++];row++;
398389c6957cSBarry Smith       break;
398489c6957cSBarry Smith     case 2:
398589c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1];
398689c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+2];
398789c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+3];
398889c6957cSBarry Smith       x[row++] = tmp1;
398989c6957cSBarry Smith       x[row++] = tmp2;
399089c6957cSBarry Smith       cnt     += 4;
399189c6957cSBarry Smith       break;
399289c6957cSBarry Smith     case 3:
399389c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2];
399489c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+3] + x3*bdiag[cnt+6];
399589c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+4] + x3*bdiag[cnt+7];
399689c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+5] + x3*bdiag[cnt+8];
399789c6957cSBarry Smith       x[row++] = tmp1;
399889c6957cSBarry Smith       x[row++] = tmp2;
399989c6957cSBarry Smith       x[row++] = tmp3;
400089c6957cSBarry Smith       cnt     += 9;
400189c6957cSBarry Smith       break;
400289c6957cSBarry Smith     case 4:
400389c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2]; x4 = b[row+3];
400489c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+4] + x3*bdiag[cnt+8] + x4*bdiag[cnt+12];
400589c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+5] + x3*bdiag[cnt+9] + x4*bdiag[cnt+13];
400689c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+6] + x3*bdiag[cnt+10] + x4*bdiag[cnt+14];
400789c6957cSBarry Smith       tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+7] + x3*bdiag[cnt+11] + x4*bdiag[cnt+15];
400889c6957cSBarry Smith       x[row++] = tmp1;
400989c6957cSBarry Smith       x[row++] = tmp2;
401089c6957cSBarry Smith       x[row++] = tmp3;
401189c6957cSBarry Smith       x[row++] = tmp4;
401289c6957cSBarry Smith       cnt     += 16;
401389c6957cSBarry Smith       break;
401489c6957cSBarry Smith     case 5:
401589c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2]; x4 = b[row+3]; x5 = b[row+4];
401689c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+5] + x3*bdiag[cnt+10] + x4*bdiag[cnt+15] + x5*bdiag[cnt+20];
401789c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+6] + x3*bdiag[cnt+11] + x4*bdiag[cnt+16] + x5*bdiag[cnt+21];
401889c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+7] + x3*bdiag[cnt+12] + x4*bdiag[cnt+17] + x5*bdiag[cnt+22];
401989c6957cSBarry Smith       tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+8] + x3*bdiag[cnt+13] + x4*bdiag[cnt+18] + x5*bdiag[cnt+23];
402089c6957cSBarry Smith       tmp5     = x1*bdiag[cnt+4] + x2*bdiag[cnt+9] + x3*bdiag[cnt+14] + x4*bdiag[cnt+19] + x5*bdiag[cnt+24];
402189c6957cSBarry Smith       x[row++] = tmp1;
402289c6957cSBarry Smith       x[row++] = tmp2;
402389c6957cSBarry Smith       x[row++] = tmp3;
402489c6957cSBarry Smith       x[row++] = tmp4;
402589c6957cSBarry Smith       x[row++] = tmp5;
402689c6957cSBarry Smith       cnt     += 25;
402789c6957cSBarry Smith       break;
402889c6957cSBarry Smith     default:
4029*98921bdaSJacob Faibussowitsch       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %" PetscInt_FMT " not supported",sizes[i]);
403089c6957cSBarry Smith     }
403189c6957cSBarry Smith   }
4032ca0c957dSBarry Smith   ierr = PetscLogFlops(2.0*cnt);CHKERRQ(ierr);
403389c6957cSBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
40343649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
403589c6957cSBarry Smith   PetscFunctionReturn(0);
403689c6957cSBarry Smith }
403789c6957cSBarry Smith 
4038b215bc84SStefano Zampini static PetscErrorCode MatSeqAIJ_Inode_ResetOps(Mat A)
4039b215bc84SStefano Zampini {
4040b215bc84SStefano Zampini   Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data;
4041b215bc84SStefano Zampini 
4042b215bc84SStefano Zampini   PetscFunctionBegin;
4043b215bc84SStefano Zampini   a->inode.node_count       = 0;
4044b215bc84SStefano Zampini   a->inode.use              = PETSC_FALSE;
4045b215bc84SStefano Zampini   a->inode.checked          = PETSC_FALSE;
4046b215bc84SStefano Zampini   a->inode.mat_nonzerostate = -1;
4047b215bc84SStefano Zampini   A->ops->getrowij          = MatGetRowIJ_SeqAIJ;
4048b215bc84SStefano Zampini   A->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ;
4049b215bc84SStefano Zampini   A->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ;
4050b215bc84SStefano Zampini   A->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ;
4051b215bc84SStefano Zampini   A->ops->coloringpatch     = NULL;
4052b215bc84SStefano Zampini   A->ops->multdiagonalblock = NULL;
4053b215bc84SStefano Zampini   if (A->factortype) {
4054b215bc84SStefano Zampini     A->ops->solve = MatSolve_SeqAIJ_inplace;
4055b215bc84SStefano Zampini   }
4056b215bc84SStefano Zampini   PetscFunctionReturn(0);
4057b215bc84SStefano Zampini }
4058b215bc84SStefano Zampini 
40594c1414c8SBarry Smith /*
40604c1414c8SBarry Smith     samestructure indicates that the matrix has not changed its nonzero structure so we
40614c1414c8SBarry Smith     do not need to recompute the inodes
40624c1414c8SBarry Smith */
4063a02bda8eSBarry Smith PetscErrorCode MatSeqAIJCheckInode(Mat A)
40644c1414c8SBarry Smith {
40654c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
40664c1414c8SBarry Smith   PetscErrorCode ierr;
40678758e1faSBarry Smith   PetscInt       i,j,m,nzx,nzy,*ns,node_count,blk_size;
4068ace3abfcSBarry Smith   PetscBool      flag;
40698758e1faSBarry Smith   const PetscInt *idx,*idy,*ii;
40704c1414c8SBarry Smith 
40714c1414c8SBarry Smith   PetscFunctionBegin;
4072b215bc84SStefano Zampini   if (!a->inode.use) {
4073b215bc84SStefano Zampini     ierr = MatSeqAIJ_Inode_ResetOps(A);CHKERRQ(ierr);
4074b215bc84SStefano Zampini     ierr = PetscFree(a->inode.size);CHKERRQ(ierr);
4075b215bc84SStefano Zampini     PetscFunctionReturn(0);
4076b215bc84SStefano Zampini   }
4077a02bda8eSBarry Smith   if (a->inode.checked && A->nonzerostate == a->inode.mat_nonzerostate) PetscFunctionReturn(0);
40784c1414c8SBarry Smith 
4079d0f46423SBarry Smith   m = A->rmap->n;
4080b215bc84SStefano Zampini   if (!a->inode.size) { ierr = PetscMalloc1(m+1,&a->inode.size);CHKERRQ(ierr); }
4081b215bc84SStefano Zampini   ns = a->inode.size;
40824c1414c8SBarry Smith 
40834c1414c8SBarry Smith   i          = 0;
40844c1414c8SBarry Smith   node_count = 0;
40854c1414c8SBarry Smith   idx        = a->j;
40864c1414c8SBarry Smith   ii         = a->i;
40874c1414c8SBarry Smith   while (i < m) {                /* For each row */
40884c1414c8SBarry Smith     nzx = ii[i+1] - ii[i];       /* Number of nonzeros */
40894c1414c8SBarry Smith     /* Limits the number of elements in a node to 'a->inode.limit' */
40904c1414c8SBarry Smith     for (j=i+1,idy=idx,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
40914c1414c8SBarry Smith       nzy = ii[j+1] - ii[j];     /* Same number of nonzeros */
40924c1414c8SBarry Smith       if (nzy != nzx) break;
40934c1414c8SBarry Smith       idy += nzx;              /* Same nonzero pattern */
4094580bdb30SBarry Smith       ierr = PetscArraycmp(idx,idy,nzx,&flag);CHKERRQ(ierr);
40954c1414c8SBarry Smith       if (!flag) break;
40964c1414c8SBarry Smith     }
40974c1414c8SBarry Smith     ns[node_count++] = blk_size;
40984c1414c8SBarry Smith     idx             += blk_size*nzx;
40994c1414c8SBarry Smith     i                = j;
41004c1414c8SBarry Smith   }
41012cb58ee3SKarl Rupp 
41024c1414c8SBarry Smith   /* If not enough inodes found,, do not use inode version of the routines */
4103be6adb11SBarry Smith   if (!m || node_count > .8*m) {
4104b215bc84SStefano Zampini     ierr = MatSeqAIJ_Inode_ResetOps(A);CHKERRQ(ierr);
4105b215bc84SStefano Zampini     ierr = PetscFree(a->inode.size);CHKERRQ(ierr);
4106c0aa6a63SJacob Faibussowitsch     ierr = PetscInfo2(A,"Found %" PetscInt_FMT " nodes out of %" PetscInt_FMT " rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr);
41074c1414c8SBarry Smith   } else {
4108d5f3da31SBarry Smith     if (!A->factortype) {
4109375a6242SBarry Smith       A->ops->multdiagonalblock = MatMultDiagonalBlock_SeqAIJ_Inode;
4110375a6242SBarry Smith       if (A->rmap->n == A->cmap->n) {
41114108e4d5SBarry Smith         A->ops->getrowij        = MatGetRowIJ_SeqAIJ_Inode;
41124108e4d5SBarry Smith         A->ops->restorerowij    = MatRestoreRowIJ_SeqAIJ_Inode;
41134108e4d5SBarry Smith         A->ops->getcolumnij     = MatGetColumnIJ_SeqAIJ_Inode;
41144108e4d5SBarry Smith         A->ops->restorecolumnij = MatRestoreColumnIJ_SeqAIJ_Inode;
41154108e4d5SBarry Smith         A->ops->coloringpatch   = MatColoringPatch_SeqAIJ_Inode;
4116375a6242SBarry Smith       }
4117d3ac4fa3SBarry Smith     } else {
4118d3ac4fa3SBarry Smith       A->ops->solve = MatSolve_SeqAIJ_Inode_inplace;
4119d3ac4fa3SBarry Smith     }
41204c1414c8SBarry Smith     a->inode.node_count = node_count;
4121c0aa6a63SJacob Faibussowitsch     ierr = PetscInfo3(A,"Found %" PetscInt_FMT " nodes of %" PetscInt_FMT ". Limit used: %" PetscInt_FMT ". Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr);
41224c1414c8SBarry Smith   }
4123be6adb11SBarry Smith   a->inode.checked          = PETSC_TRUE;
4124a02bda8eSBarry Smith   a->inode.mat_nonzerostate = A->nonzerostate;
41254c1414c8SBarry Smith   PetscFunctionReturn(0);
41264c1414c8SBarry Smith }
41274c1414c8SBarry Smith 
4128150f0143SBarry Smith PetscErrorCode MatDuplicate_SeqAIJ_Inode(Mat A,MatDuplicateOption cpvalues,Mat *C)
4129150f0143SBarry Smith {
4130150f0143SBarry Smith   Mat            B =*C;
4131150f0143SBarry Smith   Mat_SeqAIJ     *c=(Mat_SeqAIJ*)B->data,*a=(Mat_SeqAIJ*)A->data;
4132150f0143SBarry Smith   PetscErrorCode ierr;
4133150f0143SBarry Smith   PetscInt       m=A->rmap->n;
4134150f0143SBarry Smith 
4135150f0143SBarry Smith   PetscFunctionBegin;
4136150f0143SBarry Smith   c->inode.use              = a->inode.use;
4137150f0143SBarry Smith   c->inode.limit            = a->inode.limit;
4138150f0143SBarry Smith   c->inode.max_limit        = a->inode.max_limit;
4139ec710b6aSStefano Zampini   c->inode.checked          = PETSC_FALSE;
4140ec710b6aSStefano Zampini   c->inode.size             = NULL;
4141ec710b6aSStefano Zampini   c->inode.node_count       = 0;
4142ec710b6aSStefano Zampini   c->inode.ibdiagvalid      = PETSC_FALSE;
4143ec710b6aSStefano Zampini   c->inode.ibdiag           = NULL;
4144ec710b6aSStefano Zampini   c->inode.bdiag            = NULL;
4145ec710b6aSStefano Zampini   c->inode.mat_nonzerostate = -1;
4146b215bc84SStefano Zampini   if (a->inode.use) {
4147ec710b6aSStefano Zampini     if (a->inode.checked && a->inode.size) {
4148b215bc84SStefano Zampini       ierr = PetscMalloc1(m+1,&c->inode.size);CHKERRQ(ierr);
4149580bdb30SBarry Smith       ierr = PetscArraycpy(c->inode.size,a->inode.size,m+1);CHKERRQ(ierr);
4150ec710b6aSStefano Zampini 
4151ec710b6aSStefano Zampini       c->inode.checked          = PETSC_TRUE;
4152ec710b6aSStefano Zampini       c->inode.node_count       = a->inode.node_count;
4153ec710b6aSStefano Zampini       c->inode.mat_nonzerostate = (*C)->nonzerostate;
4154ec710b6aSStefano Zampini     }
4155a02bda8eSBarry Smith     /* note the table of functions below should match that in MatSeqAIJCheckInode() */
41562c451681SBarry Smith     if (!B->factortype) {
41572c451681SBarry Smith       B->ops->getrowij          = MatGetRowIJ_SeqAIJ_Inode;
41582c451681SBarry Smith       B->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ_Inode;
41592c451681SBarry Smith       B->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ_Inode;
41602c451681SBarry Smith       B->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ_Inode;
41612c451681SBarry Smith       B->ops->coloringpatch     = MatColoringPatch_SeqAIJ_Inode;
41622c451681SBarry Smith       B->ops->multdiagonalblock = MatMultDiagonalBlock_SeqAIJ_Inode;
4163150f0143SBarry Smith     } else {
41642c451681SBarry Smith       B->ops->solve = MatSolve_SeqAIJ_Inode_inplace;
4165150f0143SBarry Smith     }
4166150f0143SBarry Smith   }
4167150f0143SBarry Smith   PetscFunctionReturn(0);
4168150f0143SBarry Smith }
4169150f0143SBarry Smith 
41708758e1faSBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatGetRow_FactoredLU(PetscInt *cols,PetscInt nzl,PetscInt nzu,PetscInt nz,const PetscInt *ai,const PetscInt *aj,const PetscInt *adiag,PetscInt row)
417117454e89SShri Abhyankar {
41728758e1faSBarry Smith   PetscInt       k;
41738758e1faSBarry Smith   const PetscInt *vi;
41746e111a19SKarl Rupp 
417517454e89SShri Abhyankar   PetscFunctionBegin;
417617454e89SShri Abhyankar   vi = aj + ai[row];
417717454e89SShri Abhyankar   for (k=0; k<nzl; k++) cols[k] = vi[k];
417817454e89SShri Abhyankar   vi        = aj + adiag[row];
417917454e89SShri Abhyankar   cols[nzl] = vi[0];
418017454e89SShri Abhyankar   vi        = aj + adiag[row+1]+1;
418117454e89SShri Abhyankar   for (k=0; k<nzu; k++) cols[nzl+1+k] = vi[k];
418217454e89SShri Abhyankar   PetscFunctionReturn(0);
418317454e89SShri Abhyankar }
41846936b636SHong Zhang /*
4185a02bda8eSBarry Smith    MatSeqAIJCheckInode_FactorLU - Check Inode for factored seqaij matrix.
4186a02bda8eSBarry Smith    Modified from MatSeqAIJCheckInode().
41876936b636SHong Zhang 
41886936b636SHong Zhang    Input Parameters:
4189abb87a52SBarry Smith .  Mat A - ILU or LU matrix factor
4190abb87a52SBarry Smith 
41916936b636SHong Zhang */
4192a02bda8eSBarry Smith PetscErrorCode MatSeqAIJCheckInode_FactorLU(Mat A)
4193019b515eSShri Abhyankar {
4194019b515eSShri Abhyankar   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
4195019b515eSShri Abhyankar   PetscErrorCode ierr;
4196019b515eSShri Abhyankar   PetscInt       i,j,m,nzl1,nzu1,nzl2,nzu2,nzx,nzy,node_count,blk_size;
41978758e1faSBarry Smith   PetscInt       *cols1,*cols2,*ns;
41988758e1faSBarry Smith   const PetscInt *ai = a->i,*aj = a->j, *adiag = a->diag;
4199ace3abfcSBarry Smith   PetscBool      flag;
4200019b515eSShri Abhyankar 
4201019b515eSShri Abhyankar   PetscFunctionBegin;
4202019b515eSShri Abhyankar   if (!a->inode.use)    PetscFunctionReturn(0);
4203abb87a52SBarry Smith   if (a->inode.checked) PetscFunctionReturn(0);
4204019b515eSShri Abhyankar 
4205019b515eSShri Abhyankar   m = A->rmap->n;
42062205254eSKarl Rupp   if (a->inode.size) ns = a->inode.size;
42072205254eSKarl Rupp   else {
4208854ce69bSBarry Smith     ierr = PetscMalloc1(m+1,&ns);CHKERRQ(ierr);
42092205254eSKarl Rupp   }
4210019b515eSShri Abhyankar 
4211019b515eSShri Abhyankar   i          = 0;
4212019b515eSShri Abhyankar   node_count = 0;
4213dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&cols1,m,&cols2);CHKERRQ(ierr);
4214019b515eSShri Abhyankar   while (i < m) {                /* For each row */
4215019b515eSShri Abhyankar     nzl1 = ai[i+1] - ai[i];       /* Number of nonzeros in L */
4216019b515eSShri Abhyankar     nzu1 = adiag[i] - adiag[i+1] - 1; /* Number of nonzeros in U excluding diagonal*/
4217019b515eSShri Abhyankar     nzx  = nzl1 + nzu1 + 1;
4218019b515eSShri Abhyankar     MatGetRow_FactoredLU(cols1,nzl1,nzu1,nzx,ai,aj,adiag,i);
4219019b515eSShri Abhyankar 
4220019b515eSShri Abhyankar     /* Limits the number of elements in a node to 'a->inode.limit' */
4221019b515eSShri Abhyankar     for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
4222019b515eSShri Abhyankar       nzl2 = ai[j+1] - ai[j];
4223019b515eSShri Abhyankar       nzu2 = adiag[j] - adiag[j+1] - 1;
4224019b515eSShri Abhyankar       nzy  = nzl2 + nzu2 + 1;
4225019b515eSShri Abhyankar       if (nzy != nzx) break;
422617454e89SShri Abhyankar       ierr = MatGetRow_FactoredLU(cols2,nzl2,nzu2,nzy,ai,aj,adiag,j);CHKERRQ(ierr);
4227580bdb30SBarry Smith       ierr = PetscArraycmp(cols1,cols2,nzx,&flag);CHKERRQ(ierr);
42288758e1faSBarry Smith       if (!flag) break;
4229019b515eSShri Abhyankar     }
4230019b515eSShri Abhyankar     ns[node_count++] = blk_size;
4231019b515eSShri Abhyankar     i                = j;
4232019b515eSShri Abhyankar   }
42338758e1faSBarry Smith   ierr             = PetscFree2(cols1,cols2);CHKERRQ(ierr);
4234019b515eSShri Abhyankar   /* If not enough inodes found,, do not use inode version of the routines */
4235be6adb11SBarry Smith   if (!m || node_count > .8*m) {
4236019b515eSShri Abhyankar     ierr = PetscFree(ns);CHKERRQ(ierr);
42372205254eSKarl Rupp 
4238019b515eSShri Abhyankar     a->inode.node_count = 0;
42390298fd71SBarry Smith     a->inode.size       = NULL;
4240019b515eSShri Abhyankar     a->inode.use        = PETSC_FALSE;
42412205254eSKarl Rupp 
4242c0aa6a63SJacob Faibussowitsch     ierr = PetscInfo2(A,"Found %" PetscInt_FMT " nodes out of %" PetscInt_FMT " rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr);
4243019b515eSShri Abhyankar   } else {
4244f4259b30SLisandro Dalcin     A->ops->mult              = NULL;
4245f4259b30SLisandro Dalcin     A->ops->sor               = NULL;
4246f4259b30SLisandro Dalcin     A->ops->multadd           = NULL;
4247f4259b30SLisandro Dalcin     A->ops->getrowij          = NULL;
4248f4259b30SLisandro Dalcin     A->ops->restorerowij      = NULL;
4249f4259b30SLisandro Dalcin     A->ops->getcolumnij       = NULL;
4250f4259b30SLisandro Dalcin     A->ops->restorecolumnij   = NULL;
4251f4259b30SLisandro Dalcin     A->ops->coloringpatch     = NULL;
4252f4259b30SLisandro Dalcin     A->ops->multdiagonalblock = NULL;
4253019b515eSShri Abhyankar     a->inode.node_count       = node_count;
4254019b515eSShri Abhyankar     a->inode.size             = ns;
42552205254eSKarl Rupp 
4256c0aa6a63SJacob Faibussowitsch     ierr = PetscInfo3(A,"Found %" PetscInt_FMT " nodes of %" PetscInt_FMT ". Limit used: %" PetscInt_FMT ". Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr);
4257019b515eSShri Abhyankar   }
4258be6adb11SBarry Smith   a->inode.checked = PETSC_TRUE;
4259019b515eSShri Abhyankar   PetscFunctionReturn(0);
4260019b515eSShri Abhyankar }
4261019b515eSShri Abhyankar 
4262acf2f550SJed Brown PetscErrorCode MatSeqAIJInvalidateDiagonal_Inode(Mat A)
4263acf2f550SJed Brown {
4264acf2f550SJed Brown   Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data;
4265acf2f550SJed Brown 
4266acf2f550SJed Brown   PetscFunctionBegin;
4267acf2f550SJed Brown   a->inode.ibdiagvalid = PETSC_FALSE;
4268acf2f550SJed Brown   PetscFunctionReturn(0);
4269acf2f550SJed Brown }
4270acf2f550SJed Brown 
42714c1414c8SBarry Smith /*
42724c1414c8SBarry Smith      This is really ugly. if inodes are used this replaces the
42734c1414c8SBarry Smith   permutations with ones that correspond to rows/cols of the matrix
42744c1414c8SBarry Smith   rather then inode blocks
42754c1414c8SBarry Smith */
42767087cfbeSBarry Smith PetscErrorCode  MatInodeAdjustForInodes(Mat A,IS *rperm,IS *cperm)
42774c1414c8SBarry Smith {
42784ac538c5SBarry Smith   PetscErrorCode ierr;
42794c1414c8SBarry Smith 
42804c1414c8SBarry Smith   PetscFunctionBegin;
42814ac538c5SBarry Smith   ierr = PetscTryMethod(A,"MatInodeAdjustForInodes_C",(Mat,IS*,IS*),(A,rperm,cperm));CHKERRQ(ierr);
42824c1414c8SBarry Smith   PetscFunctionReturn(0);
42834c1414c8SBarry Smith }
42844c1414c8SBarry Smith 
42857087cfbeSBarry Smith PetscErrorCode  MatInodeAdjustForInodes_SeqAIJ_Inode(Mat A,IS *rperm,IS *cperm)
42864c1414c8SBarry Smith {
42874c1414c8SBarry Smith   Mat_SeqAIJ     *a=(Mat_SeqAIJ*)A->data;
42884c1414c8SBarry Smith   PetscErrorCode ierr;
42895d0c19d7SBarry Smith   PetscInt       m = A->rmap->n,n = A->cmap->n,i,j,nslim_row = a->inode.node_count;
42905d0c19d7SBarry Smith   const PetscInt *ridx,*cidx;
42914c1414c8SBarry Smith   PetscInt       row,col,*permr,*permc,*ns_row =  a->inode.size,*tns,start_val,end_val,indx;
42924c1414c8SBarry Smith   PetscInt       nslim_col,*ns_col;
42934c1414c8SBarry Smith   IS             ris = *rperm,cis = *cperm;
42944c1414c8SBarry Smith 
42954c1414c8SBarry Smith   PetscFunctionBegin;
42964c1414c8SBarry Smith   if (!a->inode.size) PetscFunctionReturn(0); /* no inodes so return */
42974c1414c8SBarry Smith   if (a->inode.node_count == m) PetscFunctionReturn(0); /* all inodes are of size 1 */
42984c1414c8SBarry Smith 
4299470880abSPatrick Sanan   ierr = MatCreateColInode_Private(A,&nslim_col,&ns_col);CHKERRQ(ierr);
4300854ce69bSBarry Smith   ierr = PetscMalloc1(((nslim_row>nslim_col) ? nslim_row : nslim_col)+1,&tns);CHKERRQ(ierr);
4301dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&permr,n,&permc);CHKERRQ(ierr);
43024c1414c8SBarry Smith 
43034c1414c8SBarry Smith   ierr = ISGetIndices(ris,&ridx);CHKERRQ(ierr);
43044c1414c8SBarry Smith   ierr = ISGetIndices(cis,&cidx);CHKERRQ(ierr);
43054c1414c8SBarry Smith 
43064c1414c8SBarry Smith   /* Form the inode structure for the rows of permuted matric using inv perm*/
43074c1414c8SBarry Smith   for (i=0,tns[0]=0; i<nslim_row; ++i) tns[i+1] = tns[i] + ns_row[i];
43084c1414c8SBarry Smith 
43094c1414c8SBarry Smith   /* Construct the permutations for rows*/
43104c1414c8SBarry Smith   for (i=0,row = 0; i<nslim_row; ++i) {
43114c1414c8SBarry Smith     indx      = ridx[i];
43124c1414c8SBarry Smith     start_val = tns[indx];
43134c1414c8SBarry Smith     end_val   = tns[indx + 1];
43144c1414c8SBarry Smith     for (j=start_val; j<end_val; ++j,++row) permr[row]= j;
43154c1414c8SBarry Smith   }
43164c1414c8SBarry Smith 
43174c1414c8SBarry Smith   /* Form the inode structure for the columns of permuted matrix using inv perm*/
43184c1414c8SBarry Smith   for (i=0,tns[0]=0; i<nslim_col; ++i) tns[i+1] = tns[i] + ns_col[i];
43194c1414c8SBarry Smith 
43204c1414c8SBarry Smith   /* Construct permutations for columns */
43214c1414c8SBarry Smith   for (i=0,col=0; i<nslim_col; ++i) {
43224c1414c8SBarry Smith     indx      = cidx[i];
43234c1414c8SBarry Smith     start_val = tns[indx];
43244c1414c8SBarry Smith     end_val   = tns[indx + 1];
43254c1414c8SBarry Smith     for (j = start_val; j<end_val; ++j,++col) permc[col]= j;
43264c1414c8SBarry Smith   }
43274c1414c8SBarry Smith 
432870b3c8c7SBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,n,permr,PETSC_COPY_VALUES,rperm);CHKERRQ(ierr);
43290e83c824SBarry Smith   ierr = ISSetPermutation(*rperm);CHKERRQ(ierr);
433070b3c8c7SBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,n,permc,PETSC_COPY_VALUES,cperm);CHKERRQ(ierr);
43310e83c824SBarry Smith   ierr = ISSetPermutation(*cperm);CHKERRQ(ierr);
43324c1414c8SBarry Smith 
43334c1414c8SBarry Smith   ierr = ISRestoreIndices(ris,&ridx);CHKERRQ(ierr);
43344c1414c8SBarry Smith   ierr = ISRestoreIndices(cis,&cidx);CHKERRQ(ierr);
43354c1414c8SBarry Smith 
43364c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
43370e83c824SBarry Smith   ierr = PetscFree2(permr,permc);CHKERRQ(ierr);
43386bf464f9SBarry Smith   ierr = ISDestroy(&cis);CHKERRQ(ierr);
43396bf464f9SBarry Smith   ierr = ISDestroy(&ris);CHKERRQ(ierr);
43404c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
43414c1414c8SBarry Smith   PetscFunctionReturn(0);
43424c1414c8SBarry Smith }
43434c1414c8SBarry Smith 
43444c1414c8SBarry Smith /*@C
43454c1414c8SBarry Smith    MatInodeGetInodeSizes - Returns the inode information of the Inode matrix.
43464c1414c8SBarry Smith 
43473f9fe445SBarry Smith    Not Collective
43484c1414c8SBarry Smith 
43494c1414c8SBarry Smith    Input Parameter:
43504c1414c8SBarry Smith .  A - the Inode matrix or matrix derived from the Inode class -- e.g., SeqAIJ
43514c1414c8SBarry Smith 
4352d8d19677SJose E. Roman    Output Parameters:
43534c1414c8SBarry Smith +  node_count - no of inodes present in the matrix.
43544c1414c8SBarry Smith .  sizes      - an array of size node_count,with sizes of each inode.
43554c1414c8SBarry Smith -  limit      - the max size used to generate the inodes.
43564c1414c8SBarry Smith 
43574c1414c8SBarry Smith    Level: advanced
43584c1414c8SBarry Smith 
435995452b02SPatrick Sanan    Notes:
436095452b02SPatrick Sanan     This routine returns some internal storage information
43614c1414c8SBarry Smith    of the matrix, it is intended to be used by advanced users.
43624c1414c8SBarry Smith    It should be called after the matrix is assembled.
43634c1414c8SBarry Smith    The contents of the sizes[] array should not be changed.
43640298fd71SBarry Smith    NULL may be passed for information not requested.
43654c1414c8SBarry Smith 
43664c1414c8SBarry Smith .seealso: MatGetInfo()
43674c1414c8SBarry Smith @*/
43687087cfbeSBarry Smith PetscErrorCode  MatInodeGetInodeSizes(Mat A,PetscInt *node_count,PetscInt *sizes[],PetscInt *limit)
43694c1414c8SBarry Smith {
43704c1414c8SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt*,PetscInt*[],PetscInt*);
43714c1414c8SBarry Smith 
43724c1414c8SBarry Smith   PetscFunctionBegin;
4373e32f2f54SBarry Smith   if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
43740005d66cSJed Brown   ierr = PetscObjectQueryFunction((PetscObject)A,"MatInodeGetInodeSizes_C",&f);CHKERRQ(ierr);
43754c1414c8SBarry Smith   if (f) {
43764c1414c8SBarry Smith     ierr = (*f)(A,node_count,sizes,limit);CHKERRQ(ierr);
43774c1414c8SBarry Smith   }
43784c1414c8SBarry Smith   PetscFunctionReturn(0);
43794c1414c8SBarry Smith }
43804c1414c8SBarry Smith 
43817087cfbeSBarry Smith PetscErrorCode  MatInodeGetInodeSizes_SeqAIJ_Inode(Mat A,PetscInt *node_count,PetscInt *sizes[],PetscInt *limit)
43824c1414c8SBarry Smith {
43834c1414c8SBarry Smith   Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data;
43844c1414c8SBarry Smith 
43854c1414c8SBarry Smith   PetscFunctionBegin;
43864c1414c8SBarry Smith   if (node_count) *node_count = a->inode.node_count;
43874c1414c8SBarry Smith   if (sizes)      *sizes      = a->inode.size;
43884c1414c8SBarry Smith   if (limit)      *limit      = a->inode.limit;
43894c1414c8SBarry Smith   PetscFunctionReturn(0);
43904c1414c8SBarry Smith }
4391