xref: /petsc/src/mat/impls/aij/seq/inode.c (revision a02bda8e9177763e3a7baa8b1d4a3ca70a8d6433)
14c1414c8SBarry Smith 
24c1414c8SBarry Smith /*
34c1414c8SBarry Smith   This file provides high performance routines for the Inode format (compressed sparse row)
44c1414c8SBarry Smith   by taking advantage of rows with identical nonzero structure (I-nodes).
54c1414c8SBarry Smith */
6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h>
74c1414c8SBarry Smith 
84c1414c8SBarry Smith #undef __FUNCT__
94c1414c8SBarry Smith #define __FUNCT__ "Mat_CreateColInode"
104c1414c8SBarry Smith static PetscErrorCode Mat_CreateColInode(Mat A,PetscInt *size,PetscInt **ns)
114c1414c8SBarry Smith {
124c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
134c1414c8SBarry Smith   PetscErrorCode ierr;
144c1414c8SBarry Smith   PetscInt       i,count,m,n,min_mn,*ns_row,*ns_col;
154c1414c8SBarry Smith 
164c1414c8SBarry Smith   PetscFunctionBegin;
17d0f46423SBarry Smith   n      = A->cmap->n;
18d0f46423SBarry Smith   m      = A->rmap->n;
194c1414c8SBarry Smith   ns_row = a->inode.size;
204c1414c8SBarry Smith 
214c1414c8SBarry Smith   min_mn = (m < n) ? m : n;
224c1414c8SBarry Smith   if (!ns) {
234c1414c8SBarry Smith     for (count=0,i=0; count<min_mn; count+=ns_row[i],i++) ;
244c1414c8SBarry Smith     for (; count+1 < n; count++,i++) ;
254c1414c8SBarry Smith     if (count < n)  {
264c1414c8SBarry Smith       i++;
274c1414c8SBarry Smith     }
284c1414c8SBarry Smith     *size = i;
294c1414c8SBarry Smith     PetscFunctionReturn(0);
304c1414c8SBarry Smith   }
31854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&ns_col);CHKERRQ(ierr);
324c1414c8SBarry Smith 
334c1414c8SBarry Smith   /* Use the same row structure wherever feasible. */
344c1414c8SBarry Smith   for (count=0,i=0; count<min_mn; count+=ns_row[i],i++) {
354c1414c8SBarry Smith     ns_col[i] = ns_row[i];
364c1414c8SBarry Smith   }
374c1414c8SBarry Smith 
384c1414c8SBarry Smith   /* if m < n; pad up the remainder with inode_limit */
394c1414c8SBarry Smith   for (; count+1 < n; count++,i++) {
404c1414c8SBarry Smith     ns_col[i] = 1;
414c1414c8SBarry Smith   }
424c1414c8SBarry Smith   /* The last node is the odd ball. padd it up with the remaining rows; */
434c1414c8SBarry Smith   if (count < n) {
444c1414c8SBarry Smith     ns_col[i] = n - count;
454c1414c8SBarry Smith     i++;
464c1414c8SBarry Smith   } else if (count > n) {
474c1414c8SBarry Smith     /* Adjust for the over estimation */
484c1414c8SBarry Smith     ns_col[i-1] += n - count;
494c1414c8SBarry Smith   }
504c1414c8SBarry Smith   *size = i;
514c1414c8SBarry Smith   *ns   = ns_col;
524c1414c8SBarry Smith   PetscFunctionReturn(0);
534c1414c8SBarry Smith }
544c1414c8SBarry Smith 
554c1414c8SBarry Smith 
564c1414c8SBarry Smith /*
574c1414c8SBarry Smith       This builds symmetric version of nonzero structure,
584c1414c8SBarry Smith */
594c1414c8SBarry Smith #undef __FUNCT__
604108e4d5SBarry Smith #define __FUNCT__ "MatGetRowIJ_SeqAIJ_Inode_Symmetric"
611a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Symmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
624c1414c8SBarry Smith {
634c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
644c1414c8SBarry Smith   PetscErrorCode ierr;
658758e1faSBarry Smith   PetscInt       *work,*ia,*ja,nz,nslim_row,nslim_col,m,row,col,n;
668758e1faSBarry Smith   PetscInt       *tns,*tvc,*ns_row = a->inode.size,*ns_col,nsz,i1,i2;
678758e1faSBarry Smith   const PetscInt *j,*jmax,*ai= a->i,*aj = a->j;
684c1414c8SBarry Smith 
694c1414c8SBarry Smith   PetscFunctionBegin;
704c1414c8SBarry Smith   nslim_row = a->inode.node_count;
71d0f46423SBarry Smith   m         = A->rmap->n;
72d0f46423SBarry Smith   n         = A->cmap->n;
73e32f2f54SBarry Smith   if (m != n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatGetRowIJ_SeqAIJ_Inode_Symmetric: Matrix should be square");
744c1414c8SBarry Smith 
754c1414c8SBarry Smith   /* Use the row_inode as column_inode */
764c1414c8SBarry Smith   nslim_col = nslim_row;
774c1414c8SBarry Smith   ns_col    = ns_row;
784c1414c8SBarry Smith 
794c1414c8SBarry Smith   /* allocate space for reformated inode structure */
80854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col+1,&tns);CHKERRQ(ierr);
81854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tvc);CHKERRQ(ierr);
824c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1]+ ns_row[i1];
834c1414c8SBarry Smith 
844c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
854c1414c8SBarry Smith     nsz = ns_col[i1];
862205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
874c1414c8SBarry Smith   }
884c1414c8SBarry Smith   /* allocate space for row pointers */
89854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&ia);CHKERRQ(ierr);
904c1414c8SBarry Smith   *iia = ia;
914c1414c8SBarry Smith   ierr = PetscMemzero(ia,(nslim_row+1)*sizeof(PetscInt));CHKERRQ(ierr);
92854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&work);CHKERRQ(ierr);
934c1414c8SBarry Smith 
944c1414c8SBarry Smith   /* determine the number of columns in each row */
954c1414c8SBarry Smith   ia[0] = oshift;
964c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
974c1414c8SBarry Smith 
984c1414c8SBarry Smith     j    = aj + ai[row] + ishift;
994c1414c8SBarry Smith     jmax = aj + ai[row+1] + ishift;
1004c1414c8SBarry Smith     col  = *j++ + ishift;
1014c1414c8SBarry Smith     i2   = tvc[col];
1024c1414c8SBarry Smith     while (i2<i1 && j<jmax) { /* 1.[-xx-d-xx--] 2.[-xx-------],off-diagonal elemets */
1034c1414c8SBarry Smith       ia[i1+1]++;
1044c1414c8SBarry Smith       ia[i2+1]++;
1054c1414c8SBarry Smith       i2++;                     /* Start col of next node */
10690d2dec7SBarry Smith       while ((j<jmax) && ((col=*j+ishift)<tns[i2])) ++j;
1074c1414c8SBarry Smith       i2 = tvc[col];
1084c1414c8SBarry Smith     }
1094c1414c8SBarry Smith     if (i2 == i1) ia[i2+1]++;    /* now the diagonal element */
1104c1414c8SBarry Smith   }
1114c1414c8SBarry Smith 
1124c1414c8SBarry Smith   /* shift ia[i] to point to next row */
1134c1414c8SBarry Smith   for (i1=1; i1<nslim_row+1; i1++) {
1144c1414c8SBarry Smith     row        = ia[i1-1];
1154c1414c8SBarry Smith     ia[i1]    += row;
1164c1414c8SBarry Smith     work[i1-1] = row - oshift;
1174c1414c8SBarry Smith   }
1184c1414c8SBarry Smith 
1194c1414c8SBarry Smith   /* allocate space for column pointers */
1204c1414c8SBarry Smith   nz   = ia[nslim_row] + (!ishift);
121785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
1224c1414c8SBarry Smith   *jja = ja;
1234c1414c8SBarry Smith 
1244c1414c8SBarry Smith   /* loop over lower triangular part putting into ja */
1254c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row += ns_row[i1],i1++) {
1264c1414c8SBarry Smith     j    = aj + ai[row] + ishift;
1274c1414c8SBarry Smith     jmax = aj + ai[row+1] + ishift;
1284c1414c8SBarry Smith     col  = *j++ + ishift;
1294c1414c8SBarry Smith     i2   = tvc[col];
1304c1414c8SBarry Smith     while (i2<i1 && j<jmax) {
1314c1414c8SBarry Smith       ja[work[i2]++] = i1 + oshift;
1324c1414c8SBarry Smith       ja[work[i1]++] = i2 + oshift;
1334c1414c8SBarry Smith       ++i2;
13490d2dec7SBarry Smith       while ((j<jmax) && ((col=*j+ishift)< tns[i2])) ++j; /* Skip rest col indices in this node */
1354c1414c8SBarry Smith       i2 = tvc[col];
1364c1414c8SBarry Smith     }
1374c1414c8SBarry Smith     if (i2 == i1) ja[work[i1]++] = i2 + oshift;
1384c1414c8SBarry Smith 
1394c1414c8SBarry Smith   }
1404c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
1414c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
1424c1414c8SBarry Smith   ierr = PetscFree(tvc);CHKERRQ(ierr);
1434c1414c8SBarry Smith   PetscFunctionReturn(0);
1444c1414c8SBarry Smith }
1454c1414c8SBarry Smith 
1464c1414c8SBarry Smith /*
1474c1414c8SBarry Smith       This builds nonsymmetric version of nonzero structure,
1484c1414c8SBarry Smith */
1494c1414c8SBarry Smith #undef __FUNCT__
1504108e4d5SBarry Smith #define __FUNCT__ "MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric"
1511a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
1524c1414c8SBarry Smith {
1534c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
1544c1414c8SBarry Smith   PetscErrorCode ierr;
1558758e1faSBarry Smith   PetscInt       *work,*ia,*ja,nz,nslim_row,n,row,col,*ns_col,nslim_col;
1568758e1faSBarry Smith   PetscInt       *tns,*tvc,nsz,i1,i2;
1578758e1faSBarry Smith   const PetscInt *j,*ai= a->i,*aj = a->j,*ns_row = a->inode.size;
1584c1414c8SBarry Smith 
1594c1414c8SBarry Smith   PetscFunctionBegin;
1604c1414c8SBarry Smith   nslim_row = a->inode.node_count;
161d0f46423SBarry Smith   n         = A->cmap->n;
1624c1414c8SBarry Smith 
1634c1414c8SBarry Smith   /* Create The column_inode for this matrix */
1644c1414c8SBarry Smith   ierr = Mat_CreateColInode(A,&nslim_col,&ns_col);CHKERRQ(ierr);
1654c1414c8SBarry Smith 
1664c1414c8SBarry Smith   /* allocate space for reformated column_inode structure */
167854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col +1,&tns);CHKERRQ(ierr);
168854ce69bSBarry Smith   ierr = PetscMalloc1(n + 1,&tvc);CHKERRQ(ierr);
1694c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1] + ns_col[i1];
1704c1414c8SBarry Smith 
1714c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
1724c1414c8SBarry Smith     nsz = ns_col[i1];
1732205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
1744c1414c8SBarry Smith   }
1754c1414c8SBarry Smith   /* allocate space for row pointers */
176854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&ia);CHKERRQ(ierr);
1774c1414c8SBarry Smith   *iia = ia;
1784c1414c8SBarry Smith   ierr = PetscMemzero(ia,(nslim_row+1)*sizeof(PetscInt));CHKERRQ(ierr);
179854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_row+1,&work);CHKERRQ(ierr);
1804c1414c8SBarry Smith 
1814c1414c8SBarry Smith   /* determine the number of columns in each row */
1824c1414c8SBarry Smith   ia[0] = oshift;
1834c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
1844c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
1854c1414c8SBarry Smith     col = *j++ + ishift;
1864c1414c8SBarry Smith     i2  = tvc[col];
1874c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
1884c1414c8SBarry Smith     while (nz-- > 0) {           /* off-diagonal elemets */
1894c1414c8SBarry Smith       ia[i1+1]++;
1904c1414c8SBarry Smith       i2++;                     /* Start col of next node */
191a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
1924c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
1934c1414c8SBarry Smith     }
1944c1414c8SBarry Smith   }
1954c1414c8SBarry Smith 
1964c1414c8SBarry Smith   /* shift ia[i] to point to next row */
1974c1414c8SBarry Smith   for (i1=1; i1<nslim_row+1; i1++) {
1984c1414c8SBarry Smith     row        = ia[i1-1];
1994c1414c8SBarry Smith     ia[i1]    += row;
2004c1414c8SBarry Smith     work[i1-1] = row - oshift;
2014c1414c8SBarry Smith   }
2024c1414c8SBarry Smith 
2034c1414c8SBarry Smith   /* allocate space for column pointers */
2044c1414c8SBarry Smith   nz   = ia[nslim_row] + (!ishift);
205785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
2064c1414c8SBarry Smith   *jja = ja;
2074c1414c8SBarry Smith 
2084c1414c8SBarry Smith   /* loop over matrix putting into ja */
2094c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
2104c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
2114c1414c8SBarry Smith     col = *j++ + ishift;
2124c1414c8SBarry Smith     i2  = tvc[col];
2134c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
2144c1414c8SBarry Smith     while (nz-- > 0) {
2154c1414c8SBarry Smith       ja[work[i1]++] = i2 + oshift;
2164c1414c8SBarry Smith       ++i2;
217a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
2184c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
2194c1414c8SBarry Smith     }
2204c1414c8SBarry Smith   }
2214c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
2224c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
2234c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
2244c1414c8SBarry Smith   ierr = PetscFree(tvc);CHKERRQ(ierr);
2254c1414c8SBarry Smith   PetscFunctionReturn(0);
2264c1414c8SBarry Smith }
2274c1414c8SBarry Smith 
2284c1414c8SBarry Smith #undef __FUNCT__
2294108e4d5SBarry Smith #define __FUNCT__ "MatGetRowIJ_SeqAIJ_Inode"
2301a83f524SJed Brown static PetscErrorCode MatGetRowIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
2314c1414c8SBarry Smith {
2324c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
2334c1414c8SBarry Smith   PetscErrorCode ierr;
2344c1414c8SBarry Smith 
2354c1414c8SBarry Smith   PetscFunctionBegin;
2364c1414c8SBarry Smith   *n = a->inode.node_count;
2374c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
2388f7157efSSatish Balay   if (!blockcompressed) {
2398f7157efSSatish Balay     ierr = MatGetRowIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
2408f7157efSSatish Balay   } else if (symmetric) {
2414108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Symmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
2424c1414c8SBarry Smith   } else {
2434108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Nonsymmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
2444c1414c8SBarry Smith   }
2454c1414c8SBarry Smith   PetscFunctionReturn(0);
2464c1414c8SBarry Smith }
2474c1414c8SBarry Smith 
2484c1414c8SBarry Smith #undef __FUNCT__
2494108e4d5SBarry Smith #define __FUNCT__ "MatRestoreRowIJ_SeqAIJ_Inode"
2501a83f524SJed Brown static PetscErrorCode MatRestoreRowIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
2514c1414c8SBarry Smith {
2524c1414c8SBarry Smith   PetscErrorCode ierr;
2534c1414c8SBarry Smith 
2544c1414c8SBarry Smith   PetscFunctionBegin;
2554c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
2568f7157efSSatish Balay 
2578f7157efSSatish Balay   if (!blockcompressed) {
2588f7157efSSatish Balay     ierr = MatRestoreRowIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
2598f7157efSSatish Balay   } else {
2604c1414c8SBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
2614c1414c8SBarry Smith     ierr = PetscFree(*ja);CHKERRQ(ierr);
2628f7157efSSatish Balay   }
2634c1414c8SBarry Smith   PetscFunctionReturn(0);
2644c1414c8SBarry Smith }
2654c1414c8SBarry Smith 
2664c1414c8SBarry Smith /* ----------------------------------------------------------- */
2674c1414c8SBarry Smith 
2684c1414c8SBarry Smith #undef __FUNCT__
2694108e4d5SBarry Smith #define __FUNCT__ "MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric"
2701a83f524SJed Brown static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(Mat A,const PetscInt *iia[],const PetscInt *jja[],PetscInt ishift,PetscInt oshift)
2714c1414c8SBarry Smith {
2724c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
2734c1414c8SBarry Smith   PetscErrorCode ierr;
2744c1414c8SBarry Smith   PetscInt       *work,*ia,*ja,*j,nz,nslim_row, n,row,col,*ns_col,nslim_col;
2754c1414c8SBarry Smith   PetscInt       *tns,*tvc,*ns_row = a->inode.size,nsz,i1,i2,*ai= a->i,*aj = a->j;
2764c1414c8SBarry Smith 
2774c1414c8SBarry Smith   PetscFunctionBegin;
2784c1414c8SBarry Smith   nslim_row = a->inode.node_count;
279d0f46423SBarry Smith   n         = A->cmap->n;
2804c1414c8SBarry Smith 
2814c1414c8SBarry Smith   /* Create The column_inode for this matrix */
2824c1414c8SBarry Smith   ierr = Mat_CreateColInode(A,&nslim_col,&ns_col);CHKERRQ(ierr);
2834c1414c8SBarry Smith 
2844c1414c8SBarry Smith   /* allocate space for reformated column_inode structure */
285854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col + 1,&tns);CHKERRQ(ierr);
286854ce69bSBarry Smith   ierr = PetscMalloc1(n + 1,&tvc);CHKERRQ(ierr);
2874c1414c8SBarry Smith   for (i1=0,tns[0]=0; i1<nslim_col; ++i1) tns[i1+1] = tns[i1] + ns_col[i1];
2884c1414c8SBarry Smith 
2894c1414c8SBarry Smith   for (i1=0,col=0; i1<nslim_col; ++i1) {
2904c1414c8SBarry Smith     nsz = ns_col[i1];
2912205254eSKarl Rupp     for (i2=0; i2<nsz; ++i2,++col) tvc[col] = i1;
2924c1414c8SBarry Smith   }
2934c1414c8SBarry Smith   /* allocate space for column pointers */
294854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col+1,&ia);CHKERRQ(ierr);
2954c1414c8SBarry Smith   *iia = ia;
2964c1414c8SBarry Smith   ierr = PetscMemzero(ia,(nslim_col+1)*sizeof(PetscInt));CHKERRQ(ierr);
297854ce69bSBarry Smith   ierr = PetscMalloc1(nslim_col+1,&work);CHKERRQ(ierr);
2984c1414c8SBarry Smith 
2994c1414c8SBarry Smith   /* determine the number of columns in each row */
3004c1414c8SBarry Smith   ia[0] = oshift;
3014c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
3024c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
3034c1414c8SBarry Smith     col = *j++ + ishift;
3044c1414c8SBarry Smith     i2  = tvc[col];
3054c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
3064c1414c8SBarry Smith     while (nz-- > 0) {           /* off-diagonal elemets */
3074c1414c8SBarry Smith       /* ia[i1+1]++; */
3084c1414c8SBarry Smith       ia[i2+1]++;
3094c1414c8SBarry Smith       i2++;
310a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
3114c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
3124c1414c8SBarry Smith     }
3134c1414c8SBarry Smith   }
3144c1414c8SBarry Smith 
3154c1414c8SBarry Smith   /* shift ia[i] to point to next col */
3164c1414c8SBarry Smith   for (i1=1; i1<nslim_col+1; i1++) {
3174c1414c8SBarry Smith     col        = ia[i1-1];
3184c1414c8SBarry Smith     ia[i1]    += col;
3194c1414c8SBarry Smith     work[i1-1] = col - oshift;
3204c1414c8SBarry Smith   }
3214c1414c8SBarry Smith 
3224c1414c8SBarry Smith   /* allocate space for column pointers */
3234c1414c8SBarry Smith   nz   = ia[nslim_col] + (!ishift);
324785e854fSJed Brown   ierr = PetscMalloc1(nz,&ja);CHKERRQ(ierr);
3254c1414c8SBarry Smith   *jja = ja;
3264c1414c8SBarry Smith 
3274c1414c8SBarry Smith   /* loop over matrix putting into ja */
3284c1414c8SBarry Smith   for (i1=0,row=0; i1<nslim_row; row+=ns_row[i1],i1++) {
3294c1414c8SBarry Smith     j   = aj + ai[row] + ishift;
3304c1414c8SBarry Smith     col = *j++ + ishift;
3314c1414c8SBarry Smith     i2  = tvc[col];
3324c1414c8SBarry Smith     nz  = ai[row+1] - ai[row];
3334c1414c8SBarry Smith     while (nz-- > 0) {
3344c1414c8SBarry Smith       /* ja[work[i1]++] = i2 + oshift; */
3354c1414c8SBarry Smith       ja[work[i2]++] = i1 + oshift;
3364c1414c8SBarry Smith       i2++;
337a8e3a797SJed Brown       while (nz > 0 && ((col = *j++ + ishift) < tns[i2])) nz--;
3384c1414c8SBarry Smith       if (nz > 0) i2 = tvc[col];
3394c1414c8SBarry Smith     }
3404c1414c8SBarry Smith   }
3414c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
3424c1414c8SBarry Smith   ierr = PetscFree(work);CHKERRQ(ierr);
3434c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
3444c1414c8SBarry Smith   ierr = PetscFree(tvc);CHKERRQ(ierr);
3454c1414c8SBarry Smith   PetscFunctionReturn(0);
3464c1414c8SBarry Smith }
3474c1414c8SBarry Smith 
3484c1414c8SBarry Smith #undef __FUNCT__
3494108e4d5SBarry Smith #define __FUNCT__ "MatGetColumnIJ_SeqAIJ_Inode"
3501a83f524SJed Brown static PetscErrorCode MatGetColumnIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
3514c1414c8SBarry Smith {
3524c1414c8SBarry Smith   PetscErrorCode ierr;
3534c1414c8SBarry Smith 
3544c1414c8SBarry Smith   PetscFunctionBegin;
3550298fd71SBarry Smith   ierr = Mat_CreateColInode(A,n,NULL);CHKERRQ(ierr);
3564c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
3574c1414c8SBarry Smith 
3588f7157efSSatish Balay   if (!blockcompressed) {
3598f7157efSSatish Balay     ierr = MatGetColumnIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
3608f7157efSSatish Balay   } else if (symmetric) {
3614c1414c8SBarry Smith     /* Since the indices are symmetric it does'nt matter */
3624108e4d5SBarry Smith     ierr = MatGetRowIJ_SeqAIJ_Inode_Symmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
3634c1414c8SBarry Smith   } else {
3644108e4d5SBarry Smith     ierr = MatGetColumnIJ_SeqAIJ_Inode_Nonsymmetric(A,ia,ja,0,oshift);CHKERRQ(ierr);
3654c1414c8SBarry Smith   }
3664c1414c8SBarry Smith   PetscFunctionReturn(0);
3674c1414c8SBarry Smith }
3684c1414c8SBarry Smith 
3694c1414c8SBarry Smith #undef __FUNCT__
3704108e4d5SBarry Smith #define __FUNCT__ "MatRestoreColumnIJ_SeqAIJ_Inode"
3711a83f524SJed Brown static PetscErrorCode MatRestoreColumnIJ_SeqAIJ_Inode(Mat A,PetscInt oshift,PetscBool symmetric,PetscBool blockcompressed,PetscInt *n,const PetscInt *ia[],const PetscInt *ja[],PetscBool  *done)
3724c1414c8SBarry Smith {
3734c1414c8SBarry Smith   PetscErrorCode ierr;
3744c1414c8SBarry Smith 
3754c1414c8SBarry Smith   PetscFunctionBegin;
3764c1414c8SBarry Smith   if (!ia) PetscFunctionReturn(0);
3778f7157efSSatish Balay   if (!blockcompressed) {
3788f7157efSSatish Balay     ierr = MatRestoreColumnIJ_SeqAIJ(A,oshift,symmetric,blockcompressed,n,ia,ja,done);CHKERRQ(ierr);;
3798f7157efSSatish Balay   } else {
3804c1414c8SBarry Smith     ierr = PetscFree(*ia);CHKERRQ(ierr);
3814c1414c8SBarry Smith     ierr = PetscFree(*ja);CHKERRQ(ierr);
3828f7157efSSatish Balay   }
3834c1414c8SBarry Smith   PetscFunctionReturn(0);
3844c1414c8SBarry Smith }
3854c1414c8SBarry Smith 
3864c1414c8SBarry Smith /* ----------------------------------------------------------- */
3874c1414c8SBarry Smith 
3884c1414c8SBarry Smith #undef __FUNCT__
3894108e4d5SBarry Smith #define __FUNCT__ "MatMult_SeqAIJ_Inode"
3904108e4d5SBarry Smith static PetscErrorCode MatMult_SeqAIJ_Inode(Mat A,Vec xx,Vec yy)
3914c1414c8SBarry Smith {
3924c1414c8SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
3934c1414c8SBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5,tmp0,tmp1;
394d9fead3dSBarry Smith   PetscScalar       *y;
395dd6ea824SBarry Smith   const PetscScalar *x;
396dd6ea824SBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5;
3974c1414c8SBarry Smith   PetscErrorCode    ierr;
3988758e1faSBarry Smith   PetscInt          i1,i2,n,i,row,node_max,nsz,sz,nonzerorow=0;
3998758e1faSBarry Smith   const PetscInt    *idx,*ns,*ii;
4004c1414c8SBarry Smith 
4014c1414c8SBarry Smith #if defined(PETSC_HAVE_PRAGMA_DISJOINT)
4024c1414c8SBarry Smith #pragma disjoint(*x,*y,*v1,*v2,*v3,*v4,*v5)
4034c1414c8SBarry Smith #endif
4044c1414c8SBarry Smith 
4054c1414c8SBarry Smith   PetscFunctionBegin;
406e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
4074c1414c8SBarry Smith   node_max = a->inode.node_count;
4084c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
4093649974fSBarry Smith   ierr     = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
4104c1414c8SBarry Smith   ierr     = VecGetArray(yy,&y);CHKERRQ(ierr);
4114c1414c8SBarry Smith   idx      = a->j;
4124c1414c8SBarry Smith   v1       = a->a;
4134c1414c8SBarry Smith   ii       = a->i;
4144c1414c8SBarry Smith 
4154c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
4164c1414c8SBarry Smith     nsz         = ns[i];
4174c1414c8SBarry Smith     n           = ii[1] - ii[0];
41898c9bda7SSatish Balay     nonzerorow += (n>0)*nsz;
4194c1414c8SBarry Smith     ii         += nsz;
42050d8bf02SJed Brown     PetscPrefetchBlock(idx+nsz*n,n,0,PETSC_PREFETCH_HINT_NTA);    /* Prefetch the indices for the block row after the current one */
42150d8bf02SJed Brown     PetscPrefetchBlock(v1+nsz*n,nsz*n,0,PETSC_PREFETCH_HINT_NTA); /* Prefetch the values for the block row after the current one  */
4224c1414c8SBarry Smith     sz = n;                     /* No of non zeros in this row */
4234c1414c8SBarry Smith                                 /* Switch on the size of Node */
4244c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
4254c1414c8SBarry Smith     case 1:
42675567043SBarry Smith       sum1 = 0.;
4274c1414c8SBarry Smith 
4284c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4294c1414c8SBarry Smith         i1    = idx[0];         /* The instructions are ordered to */
4304c1414c8SBarry Smith         i2    = idx[1];         /* make the compiler's job easy */
4314c1414c8SBarry Smith         idx  += 2;
4324c1414c8SBarry Smith         tmp0  = x[i1];
4334c1414c8SBarry Smith         tmp1  = x[i2];
4344c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4354c1414c8SBarry Smith       }
4364c1414c8SBarry Smith 
4374c1414c8SBarry Smith       if (n == sz-1) {          /* Take care of the last nonzero  */
4384c1414c8SBarry Smith         tmp0  = x[*idx++];
4394c1414c8SBarry Smith         sum1 += *v1++ *tmp0;
4404c1414c8SBarry Smith       }
4414c1414c8SBarry Smith       y[row++]=sum1;
4424c1414c8SBarry Smith       break;
4434c1414c8SBarry Smith     case 2:
44475567043SBarry Smith       sum1 = 0.;
44575567043SBarry Smith       sum2 = 0.;
4464c1414c8SBarry Smith       v2   = v1 + n;
4474c1414c8SBarry Smith 
4484c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4494c1414c8SBarry Smith         i1    = idx[0];
4504c1414c8SBarry Smith         i2    = idx[1];
4514c1414c8SBarry Smith         idx  += 2;
4524c1414c8SBarry Smith         tmp0  = x[i1];
4534c1414c8SBarry Smith         tmp1  = x[i2];
4544c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4554c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
4564c1414c8SBarry Smith       }
4574c1414c8SBarry Smith       if (n == sz-1) {
4584c1414c8SBarry Smith         tmp0  = x[*idx++];
4594c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
4604c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
4614c1414c8SBarry Smith       }
4624c1414c8SBarry Smith       y[row++]=sum1;
4634c1414c8SBarry Smith       y[row++]=sum2;
4644c1414c8SBarry Smith       v1      =v2;              /* Since the next block to be processed starts there*/
4654c1414c8SBarry Smith       idx    +=sz;
4664c1414c8SBarry Smith       break;
4674c1414c8SBarry Smith     case 3:
46875567043SBarry Smith       sum1 = 0.;
46975567043SBarry Smith       sum2 = 0.;
47075567043SBarry Smith       sum3 = 0.;
4714c1414c8SBarry Smith       v2   = v1 + n;
4724c1414c8SBarry Smith       v3   = v2 + n;
4734c1414c8SBarry Smith 
4744c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
4754c1414c8SBarry Smith         i1    = idx[0];
4764c1414c8SBarry Smith         i2    = idx[1];
4774c1414c8SBarry Smith         idx  += 2;
4784c1414c8SBarry Smith         tmp0  = x[i1];
4794c1414c8SBarry Smith         tmp1  = x[i2];
4804c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
4814c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
4824c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
4834c1414c8SBarry Smith       }
4844c1414c8SBarry Smith       if (n == sz-1) {
4854c1414c8SBarry Smith         tmp0  = x[*idx++];
4864c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
4874c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
4884c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
4894c1414c8SBarry Smith       }
4904c1414c8SBarry Smith       y[row++]=sum1;
4914c1414c8SBarry Smith       y[row++]=sum2;
4924c1414c8SBarry Smith       y[row++]=sum3;
4934c1414c8SBarry Smith       v1      =v3;              /* Since the next block to be processed starts there*/
4944c1414c8SBarry Smith       idx    +=2*sz;
4954c1414c8SBarry Smith       break;
4964c1414c8SBarry Smith     case 4:
49775567043SBarry Smith       sum1 = 0.;
49875567043SBarry Smith       sum2 = 0.;
49975567043SBarry Smith       sum3 = 0.;
50075567043SBarry Smith       sum4 = 0.;
5014c1414c8SBarry Smith       v2   = v1 + n;
5024c1414c8SBarry Smith       v3   = v2 + n;
5034c1414c8SBarry Smith       v4   = v3 + n;
5044c1414c8SBarry Smith 
5054c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
5064c1414c8SBarry Smith         i1    = idx[0];
5074c1414c8SBarry Smith         i2    = idx[1];
5084c1414c8SBarry Smith         idx  += 2;
5094c1414c8SBarry Smith         tmp0  = x[i1];
5104c1414c8SBarry Smith         tmp1  = x[i2];
5114c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
5124c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
5134c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
5144c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
5154c1414c8SBarry Smith       }
5164c1414c8SBarry Smith       if (n == sz-1) {
5174c1414c8SBarry Smith         tmp0  = x[*idx++];
5184c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
5194c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
5204c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
5214c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
5224c1414c8SBarry Smith       }
5234c1414c8SBarry Smith       y[row++]=sum1;
5244c1414c8SBarry Smith       y[row++]=sum2;
5254c1414c8SBarry Smith       y[row++]=sum3;
5264c1414c8SBarry Smith       y[row++]=sum4;
5274c1414c8SBarry Smith       v1      =v4;              /* Since the next block to be processed starts there*/
5284c1414c8SBarry Smith       idx    +=3*sz;
5294c1414c8SBarry Smith       break;
5304c1414c8SBarry Smith     case 5:
53175567043SBarry Smith       sum1 = 0.;
53275567043SBarry Smith       sum2 = 0.;
53375567043SBarry Smith       sum3 = 0.;
53475567043SBarry Smith       sum4 = 0.;
53575567043SBarry Smith       sum5 = 0.;
5364c1414c8SBarry Smith       v2   = v1 + n;
5374c1414c8SBarry Smith       v3   = v2 + n;
5384c1414c8SBarry Smith       v4   = v3 + n;
5394c1414c8SBarry Smith       v5   = v4 + n;
5404c1414c8SBarry Smith 
5414c1414c8SBarry Smith       for (n = 0; n<sz-1; n+=2) {
5424c1414c8SBarry Smith         i1    = idx[0];
5434c1414c8SBarry Smith         i2    = idx[1];
5444c1414c8SBarry Smith         idx  += 2;
5454c1414c8SBarry Smith         tmp0  = x[i1];
5464c1414c8SBarry Smith         tmp1  = x[i2];
5474c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
5484c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
5494c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
5504c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
5514c1414c8SBarry Smith         sum5 += v5[0] * tmp0 + v5[1] *tmp1; v5 += 2;
5524c1414c8SBarry Smith       }
5534c1414c8SBarry Smith       if (n == sz-1) {
5544c1414c8SBarry Smith         tmp0  = x[*idx++];
5554c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
5564c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
5574c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
5584c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
5594c1414c8SBarry Smith         sum5 += *v5++ * tmp0;
5604c1414c8SBarry Smith       }
5614c1414c8SBarry Smith       y[row++]=sum1;
5624c1414c8SBarry Smith       y[row++]=sum2;
5634c1414c8SBarry Smith       y[row++]=sum3;
5644c1414c8SBarry Smith       y[row++]=sum4;
5654c1414c8SBarry Smith       y[row++]=sum5;
5664c1414c8SBarry Smith       v1      =v5;       /* Since the next block to be processed starts there */
5674c1414c8SBarry Smith       idx    +=4*sz;
5684c1414c8SBarry Smith       break;
5694c1414c8SBarry Smith     default:
570e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported");
5714c1414c8SBarry Smith     }
5724c1414c8SBarry Smith   }
5733649974fSBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
5744c1414c8SBarry Smith   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
575dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz - nonzerorow);CHKERRQ(ierr);
5764c1414c8SBarry Smith   PetscFunctionReturn(0);
5774c1414c8SBarry Smith }
5784c1414c8SBarry Smith /* ----------------------------------------------------------- */
5794108e4d5SBarry Smith /* Almost same code as the MatMult_SeqAIJ_Inode() */
5804c1414c8SBarry Smith #undef __FUNCT__
5814108e4d5SBarry Smith #define __FUNCT__ "MatMultAdd_SeqAIJ_Inode"
5824108e4d5SBarry Smith static PetscErrorCode MatMultAdd_SeqAIJ_Inode(Mat A,Vec xx,Vec zz,Vec yy)
5834c1414c8SBarry Smith {
5844c1414c8SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
5854c1414c8SBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5,tmp0,tmp1;
5868758e1faSBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5;
5878758e1faSBarry Smith   const PetscScalar *x;
5888758e1faSBarry Smith   PetscScalar       *y,*z,*zt;
5894c1414c8SBarry Smith   PetscErrorCode    ierr;
5908758e1faSBarry Smith   PetscInt          i1,i2,n,i,row,node_max,nsz,sz;
5918758e1faSBarry Smith   const PetscInt    *idx,*ns,*ii;
5924c1414c8SBarry Smith 
5934c1414c8SBarry Smith   PetscFunctionBegin;
594e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
5954c1414c8SBarry Smith   node_max = a->inode.node_count;
5964c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
5972205254eSKarl Rupp 
5988758e1faSBarry Smith   ierr = VecGetArrayRead(xx,&x);CHKERRQ(ierr);
5994c1414c8SBarry Smith   ierr = VecGetArray(yy,&y);CHKERRQ(ierr);
6004c1414c8SBarry Smith   if (zz != yy) {
6014c1414c8SBarry Smith     ierr = VecGetArray(zz,&z);CHKERRQ(ierr);
6024c1414c8SBarry Smith   } else {
6034c1414c8SBarry Smith     z = y;
6044c1414c8SBarry Smith   }
6054c1414c8SBarry Smith   zt = z;
6064c1414c8SBarry Smith 
6074c1414c8SBarry Smith   idx = a->j;
6084c1414c8SBarry Smith   v1  = a->a;
6094c1414c8SBarry Smith   ii  = a->i;
6104c1414c8SBarry Smith 
6114c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
6124c1414c8SBarry Smith     nsz = ns[i];
6134c1414c8SBarry Smith     n   = ii[1] - ii[0];
6144c1414c8SBarry Smith     ii += nsz;
6154c1414c8SBarry Smith     sz  = n;                    /* No of non zeros in this row */
6164c1414c8SBarry Smith                                 /* Switch on the size of Node */
6174c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
6184c1414c8SBarry Smith     case 1:
6194c1414c8SBarry Smith       sum1 = *zt++;
6204c1414c8SBarry Smith 
6214c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6224c1414c8SBarry Smith         i1    = idx[0];         /* The instructions are ordered to */
6234c1414c8SBarry Smith         i2    = idx[1];         /* make the compiler's job easy */
6244c1414c8SBarry Smith         idx  += 2;
6254c1414c8SBarry Smith         tmp0  = x[i1];
6264c1414c8SBarry Smith         tmp1  = x[i2];
6274c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6284c1414c8SBarry Smith       }
6294c1414c8SBarry Smith 
6304c1414c8SBarry Smith       if (n   == sz-1) {          /* Take care of the last nonzero  */
6314c1414c8SBarry Smith         tmp0  = x[*idx++];
6324c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6334c1414c8SBarry Smith       }
6344c1414c8SBarry Smith       y[row++]=sum1;
6354c1414c8SBarry Smith       break;
6364c1414c8SBarry Smith     case 2:
6374c1414c8SBarry Smith       sum1 = *zt++;
6384c1414c8SBarry Smith       sum2 = *zt++;
6394c1414c8SBarry Smith       v2   = v1 + n;
6404c1414c8SBarry Smith 
6414c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6424c1414c8SBarry Smith         i1    = idx[0];
6434c1414c8SBarry Smith         i2    = idx[1];
6444c1414c8SBarry Smith         idx  += 2;
6454c1414c8SBarry Smith         tmp0  = x[i1];
6464c1414c8SBarry Smith         tmp1  = x[i2];
6474c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6484c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
6494c1414c8SBarry Smith       }
6504c1414c8SBarry Smith       if (n   == sz-1) {
6514c1414c8SBarry Smith         tmp0  = x[*idx++];
6524c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6534c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6544c1414c8SBarry Smith       }
6554c1414c8SBarry Smith       y[row++]=sum1;
6564c1414c8SBarry Smith       y[row++]=sum2;
6574c1414c8SBarry Smith       v1      =v2;              /* Since the next block to be processed starts there*/
6584c1414c8SBarry Smith       idx    +=sz;
6594c1414c8SBarry Smith       break;
6604c1414c8SBarry Smith     case 3:
6614c1414c8SBarry Smith       sum1 = *zt++;
6624c1414c8SBarry Smith       sum2 = *zt++;
6634c1414c8SBarry Smith       sum3 = *zt++;
6644c1414c8SBarry Smith       v2   = v1 + n;
6654c1414c8SBarry Smith       v3   = v2 + n;
6664c1414c8SBarry Smith 
6674c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6684c1414c8SBarry Smith         i1    = idx[0];
6694c1414c8SBarry Smith         i2    = idx[1];
6704c1414c8SBarry Smith         idx  += 2;
6714c1414c8SBarry Smith         tmp0  = x[i1];
6724c1414c8SBarry Smith         tmp1  = x[i2];
6734c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
6744c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
6754c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
6764c1414c8SBarry Smith       }
6774c1414c8SBarry Smith       if (n == sz-1) {
6784c1414c8SBarry Smith         tmp0  = x[*idx++];
6794c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
6804c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
6814c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
6824c1414c8SBarry Smith       }
6834c1414c8SBarry Smith       y[row++]=sum1;
6844c1414c8SBarry Smith       y[row++]=sum2;
6854c1414c8SBarry Smith       y[row++]=sum3;
6864c1414c8SBarry Smith       v1      =v3;              /* Since the next block to be processed starts there*/
6874c1414c8SBarry Smith       idx    +=2*sz;
6884c1414c8SBarry Smith       break;
6894c1414c8SBarry Smith     case 4:
6904c1414c8SBarry Smith       sum1 = *zt++;
6914c1414c8SBarry Smith       sum2 = *zt++;
6924c1414c8SBarry Smith       sum3 = *zt++;
6934c1414c8SBarry Smith       sum4 = *zt++;
6944c1414c8SBarry Smith       v2   = v1 + n;
6954c1414c8SBarry Smith       v3   = v2 + n;
6964c1414c8SBarry Smith       v4   = v3 + n;
6974c1414c8SBarry Smith 
6984c1414c8SBarry Smith       for (n = 0; n< sz-1; n+=2) {
6994c1414c8SBarry Smith         i1    = idx[0];
7004c1414c8SBarry Smith         i2    = idx[1];
7014c1414c8SBarry Smith         idx  += 2;
7024c1414c8SBarry Smith         tmp0  = x[i1];
7034c1414c8SBarry Smith         tmp1  = x[i2];
7044c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
7054c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
7064c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
7074c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
7084c1414c8SBarry Smith       }
7094c1414c8SBarry Smith       if (n == sz-1) {
7104c1414c8SBarry Smith         tmp0  = x[*idx++];
7114c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
7124c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
7134c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
7144c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
7154c1414c8SBarry Smith       }
7164c1414c8SBarry Smith       y[row++]=sum1;
7174c1414c8SBarry Smith       y[row++]=sum2;
7184c1414c8SBarry Smith       y[row++]=sum3;
7194c1414c8SBarry Smith       y[row++]=sum4;
7204c1414c8SBarry Smith       v1      =v4;              /* Since the next block to be processed starts there*/
7214c1414c8SBarry Smith       idx    +=3*sz;
7224c1414c8SBarry Smith       break;
7234c1414c8SBarry Smith     case 5:
7244c1414c8SBarry Smith       sum1 = *zt++;
7254c1414c8SBarry Smith       sum2 = *zt++;
7264c1414c8SBarry Smith       sum3 = *zt++;
7274c1414c8SBarry Smith       sum4 = *zt++;
7284c1414c8SBarry Smith       sum5 = *zt++;
7294c1414c8SBarry Smith       v2   = v1 + n;
7304c1414c8SBarry Smith       v3   = v2 + n;
7314c1414c8SBarry Smith       v4   = v3 + n;
7324c1414c8SBarry Smith       v5   = v4 + n;
7334c1414c8SBarry Smith 
7344c1414c8SBarry Smith       for (n = 0; n<sz-1; n+=2) {
7354c1414c8SBarry Smith         i1    = idx[0];
7364c1414c8SBarry Smith         i2    = idx[1];
7374c1414c8SBarry Smith         idx  += 2;
7384c1414c8SBarry Smith         tmp0  = x[i1];
7394c1414c8SBarry Smith         tmp1  = x[i2];
7404c1414c8SBarry Smith         sum1 += v1[0] * tmp0 + v1[1] *tmp1; v1 += 2;
7414c1414c8SBarry Smith         sum2 += v2[0] * tmp0 + v2[1] *tmp1; v2 += 2;
7424c1414c8SBarry Smith         sum3 += v3[0] * tmp0 + v3[1] *tmp1; v3 += 2;
7434c1414c8SBarry Smith         sum4 += v4[0] * tmp0 + v4[1] *tmp1; v4 += 2;
7444c1414c8SBarry Smith         sum5 += v5[0] * tmp0 + v5[1] *tmp1; v5 += 2;
7454c1414c8SBarry Smith       }
7464c1414c8SBarry Smith       if (n   == sz-1) {
7474c1414c8SBarry Smith         tmp0  = x[*idx++];
7484c1414c8SBarry Smith         sum1 += *v1++ * tmp0;
7494c1414c8SBarry Smith         sum2 += *v2++ * tmp0;
7504c1414c8SBarry Smith         sum3 += *v3++ * tmp0;
7514c1414c8SBarry Smith         sum4 += *v4++ * tmp0;
7524c1414c8SBarry Smith         sum5 += *v5++ * tmp0;
7534c1414c8SBarry Smith       }
7544c1414c8SBarry Smith       y[row++]=sum1;
7554c1414c8SBarry Smith       y[row++]=sum2;
7564c1414c8SBarry Smith       y[row++]=sum3;
7574c1414c8SBarry Smith       y[row++]=sum4;
7584c1414c8SBarry Smith       y[row++]=sum5;
7594c1414c8SBarry Smith       v1      =v5;       /* Since the next block to be processed starts there */
7604c1414c8SBarry Smith       idx    +=4*sz;
7614c1414c8SBarry Smith       break;
7624c1414c8SBarry Smith     default:
763e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported");
7644c1414c8SBarry Smith     }
7654c1414c8SBarry Smith   }
7668758e1faSBarry Smith   ierr = VecRestoreArrayRead(xx,&x);CHKERRQ(ierr);
7674c1414c8SBarry Smith   ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr);
7684c1414c8SBarry Smith   if (zz != yy) {
7694c1414c8SBarry Smith     ierr = VecRestoreArray(zz,&z);CHKERRQ(ierr);
7704c1414c8SBarry Smith   }
771dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
7724c1414c8SBarry Smith   PetscFunctionReturn(0);
7734c1414c8SBarry Smith }
7744c1414c8SBarry Smith 
7754c1414c8SBarry Smith /* ----------------------------------------------------------- */
7764c1414c8SBarry Smith #undef __FUNCT__
777ad04f41aSHong Zhang #define __FUNCT__ "MatSolve_SeqAIJ_Inode_inplace"
778ad04f41aSHong Zhang PetscErrorCode MatSolve_SeqAIJ_Inode_inplace(Mat A,Vec bb,Vec xx)
7794c1414c8SBarry Smith {
7804c1414c8SBarry Smith   Mat_SeqAIJ        *a    = (Mat_SeqAIJ*)A->data;
7814c1414c8SBarry Smith   IS                iscol = a->col,isrow = a->row;
7824c1414c8SBarry Smith   PetscErrorCode    ierr;
7835d0c19d7SBarry Smith   const PetscInt    *r,*c,*rout,*cout;
7848758e1faSBarry Smith   PetscInt          i,j,n = A->rmap->n,nz;
7858758e1faSBarry Smith   PetscInt          node_max,*ns,row,nsz,aii,i0,i1;
7868758e1faSBarry Smith   const PetscInt    *ai = a->i,*a_j = a->j,*vi,*ad,*aj;
787d9fead3dSBarry Smith   PetscScalar       *x,*tmp,*tmps,tmp0,tmp1;
788d9fead3dSBarry Smith   PetscScalar       sum1,sum2,sum3,sum4,sum5;
789dd6ea824SBarry Smith   const MatScalar   *v1,*v2,*v3,*v4,*v5,*a_a = a->a,*aa;
790dd6ea824SBarry Smith   const PetscScalar *b;
7914c1414c8SBarry Smith 
7924c1414c8SBarry Smith   PetscFunctionBegin;
793e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
7944c1414c8SBarry Smith   node_max = a->inode.node_count;
7954c1414c8SBarry Smith   ns       = a->inode.size;     /* Node Size array */
7964c1414c8SBarry Smith 
7973649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
7984c1414c8SBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
7994c1414c8SBarry Smith   tmp  = a->solve_work;
8004c1414c8SBarry Smith 
8014c1414c8SBarry Smith   ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout;
8024c1414c8SBarry Smith   ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout + (n-1);
8034c1414c8SBarry Smith 
8044c1414c8SBarry Smith   /* forward solve the lower triangular */
8054c1414c8SBarry Smith   tmps = tmp;
8064c1414c8SBarry Smith   aa   = a_a;
8074c1414c8SBarry Smith   aj   = a_j;
8084c1414c8SBarry Smith   ad   = a->diag;
8094c1414c8SBarry Smith 
8104c1414c8SBarry Smith   for (i = 0,row = 0; i< node_max; ++i) {
8114c1414c8SBarry Smith     nsz = ns[i];
8124c1414c8SBarry Smith     aii = ai[row];
8134c1414c8SBarry Smith     v1  = aa + aii;
8144c1414c8SBarry Smith     vi  = aj + aii;
8154c1414c8SBarry Smith     nz  = ad[row]- aii;
81626549573SJed Brown     if (i < node_max-1) {
81726549573SJed Brown       /* Prefetch the block after the current one, the prefetch itself can't cause a memory error,
81826549573SJed Brown       * but our indexing to determine it's size could. */
81950d8bf02SJed Brown       PetscPrefetchBlock(aj+ai[row+nsz],ad[row+nsz]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA); /* indices */
82026549573SJed Brown       /* In my tests, it seems to be better to fetch entire rows instead of just the lower-triangular part */
82150d8bf02SJed Brown       PetscPrefetchBlock(aa+ai[row+nsz],ad[row+nsz+ns[i+1]-1]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA);
82226549573SJed Brown       /* for (j=0; j<ns[i+1]; j++) PetscPrefetchBlock(aa+ai[row+nsz+j],ad[row+nsz+j]-ai[row+nsz+j],0,0); */
82326549573SJed Brown     }
8244c1414c8SBarry Smith 
8254c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
8264c1414c8SBarry Smith     case 1:
8274c1414c8SBarry Smith       sum1 = b[*r++];
8284c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8294c1414c8SBarry Smith         i0    = vi[0];
8304c1414c8SBarry Smith         i1    = vi[1];
8314c1414c8SBarry Smith         vi   +=2;
8324c1414c8SBarry Smith         tmp0  = tmps[i0];
8334c1414c8SBarry Smith         tmp1  = tmps[i1];
8344c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8354c1414c8SBarry Smith       }
8364c1414c8SBarry Smith       if (j == nz-1) {
8374c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8384c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8394c1414c8SBarry Smith       }
8404c1414c8SBarry Smith       tmp[row++]=sum1;
8414c1414c8SBarry Smith       break;
8424c1414c8SBarry Smith     case 2:
8434c1414c8SBarry Smith       sum1 = b[*r++];
8444c1414c8SBarry Smith       sum2 = b[*r++];
8454c1414c8SBarry Smith       v2   = aa + ai[row+1];
8464c1414c8SBarry Smith 
8474c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8484c1414c8SBarry Smith         i0    = vi[0];
8494c1414c8SBarry Smith         i1    = vi[1];
8504c1414c8SBarry Smith         vi   +=2;
8514c1414c8SBarry Smith         tmp0  = tmps[i0];
8524c1414c8SBarry Smith         tmp1  = tmps[i1];
8534c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8544c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8554c1414c8SBarry Smith       }
8564c1414c8SBarry Smith       if (j == nz-1) {
8574c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8584c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8594c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8604c1414c8SBarry Smith       }
8614c1414c8SBarry Smith       sum2     -= *v2++ *sum1;
8624c1414c8SBarry Smith       tmp[row++]=sum1;
8634c1414c8SBarry Smith       tmp[row++]=sum2;
8644c1414c8SBarry Smith       break;
8654c1414c8SBarry Smith     case 3:
8664c1414c8SBarry Smith       sum1 = b[*r++];
8674c1414c8SBarry Smith       sum2 = b[*r++];
8684c1414c8SBarry Smith       sum3 = b[*r++];
8694c1414c8SBarry Smith       v2   = aa + ai[row+1];
8704c1414c8SBarry Smith       v3   = aa + ai[row+2];
8714c1414c8SBarry Smith 
8724c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
8734c1414c8SBarry Smith         i0    = vi[0];
8744c1414c8SBarry Smith         i1    = vi[1];
8754c1414c8SBarry Smith         vi   +=2;
8764c1414c8SBarry Smith         tmp0  = tmps[i0];
8774c1414c8SBarry Smith         tmp1  = tmps[i1];
8784c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
8794c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
8804c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
8814c1414c8SBarry Smith       }
8824c1414c8SBarry Smith       if (j == nz-1) {
8834c1414c8SBarry Smith         tmp0  = tmps[*vi++];
8844c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
8854c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
8864c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
8874c1414c8SBarry Smith       }
8884c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
8894c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
8904c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
8912205254eSKarl Rupp 
8924c1414c8SBarry Smith       tmp[row++]=sum1;
8934c1414c8SBarry Smith       tmp[row++]=sum2;
8944c1414c8SBarry Smith       tmp[row++]=sum3;
8954c1414c8SBarry Smith       break;
8964c1414c8SBarry Smith 
8974c1414c8SBarry Smith     case 4:
8984c1414c8SBarry Smith       sum1 = b[*r++];
8994c1414c8SBarry Smith       sum2 = b[*r++];
9004c1414c8SBarry Smith       sum3 = b[*r++];
9014c1414c8SBarry Smith       sum4 = b[*r++];
9024c1414c8SBarry Smith       v2   = aa + ai[row+1];
9034c1414c8SBarry Smith       v3   = aa + ai[row+2];
9044c1414c8SBarry Smith       v4   = aa + ai[row+3];
9054c1414c8SBarry Smith 
9064c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
9074c1414c8SBarry Smith         i0    = vi[0];
9084c1414c8SBarry Smith         i1    = vi[1];
9094c1414c8SBarry Smith         vi   +=2;
9104c1414c8SBarry Smith         tmp0  = tmps[i0];
9114c1414c8SBarry Smith         tmp1  = tmps[i1];
9124c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
9134c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
9144c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
9154c1414c8SBarry Smith         sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
9164c1414c8SBarry Smith       }
9174c1414c8SBarry Smith       if (j == nz-1) {
9184c1414c8SBarry Smith         tmp0  = tmps[*vi++];
9194c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
9204c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
9214c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
9224c1414c8SBarry Smith         sum4 -= *v4++ *tmp0;
9234c1414c8SBarry Smith       }
9244c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
9254c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
9264c1414c8SBarry Smith       sum4 -= *v4++ * sum1;
9274c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
9284c1414c8SBarry Smith       sum4 -= *v4++ * sum2;
9294c1414c8SBarry Smith       sum4 -= *v4++ * sum3;
9304c1414c8SBarry Smith 
9314c1414c8SBarry Smith       tmp[row++]=sum1;
9324c1414c8SBarry Smith       tmp[row++]=sum2;
9334c1414c8SBarry Smith       tmp[row++]=sum3;
9344c1414c8SBarry Smith       tmp[row++]=sum4;
9354c1414c8SBarry Smith       break;
9364c1414c8SBarry Smith     case 5:
9374c1414c8SBarry Smith       sum1 = b[*r++];
9384c1414c8SBarry Smith       sum2 = b[*r++];
9394c1414c8SBarry Smith       sum3 = b[*r++];
9404c1414c8SBarry Smith       sum4 = b[*r++];
9414c1414c8SBarry Smith       sum5 = b[*r++];
9424c1414c8SBarry Smith       v2   = aa + ai[row+1];
9434c1414c8SBarry Smith       v3   = aa + ai[row+2];
9444c1414c8SBarry Smith       v4   = aa + ai[row+3];
9454c1414c8SBarry Smith       v5   = aa + ai[row+4];
9464c1414c8SBarry Smith 
9474c1414c8SBarry Smith       for (j=0; j<nz-1; j+=2) {
9484c1414c8SBarry Smith         i0    = vi[0];
9494c1414c8SBarry Smith         i1    = vi[1];
9504c1414c8SBarry Smith         vi   +=2;
9514c1414c8SBarry Smith         tmp0  = tmps[i0];
9524c1414c8SBarry Smith         tmp1  = tmps[i1];
9534c1414c8SBarry Smith         sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
9544c1414c8SBarry Smith         sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
9554c1414c8SBarry Smith         sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
9564c1414c8SBarry Smith         sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
9574c1414c8SBarry Smith         sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
9584c1414c8SBarry Smith       }
9594c1414c8SBarry Smith       if (j == nz-1) {
9604c1414c8SBarry Smith         tmp0  = tmps[*vi++];
9614c1414c8SBarry Smith         sum1 -= *v1++ *tmp0;
9624c1414c8SBarry Smith         sum2 -= *v2++ *tmp0;
9634c1414c8SBarry Smith         sum3 -= *v3++ *tmp0;
9644c1414c8SBarry Smith         sum4 -= *v4++ *tmp0;
9654c1414c8SBarry Smith         sum5 -= *v5++ *tmp0;
9664c1414c8SBarry Smith       }
9674c1414c8SBarry Smith 
9684c1414c8SBarry Smith       sum2 -= *v2++ * sum1;
9694c1414c8SBarry Smith       sum3 -= *v3++ * sum1;
9704c1414c8SBarry Smith       sum4 -= *v4++ * sum1;
9714c1414c8SBarry Smith       sum5 -= *v5++ * sum1;
9724c1414c8SBarry Smith       sum3 -= *v3++ * sum2;
9734c1414c8SBarry Smith       sum4 -= *v4++ * sum2;
9744c1414c8SBarry Smith       sum5 -= *v5++ * sum2;
9754c1414c8SBarry Smith       sum4 -= *v4++ * sum3;
9764c1414c8SBarry Smith       sum5 -= *v5++ * sum3;
9774c1414c8SBarry Smith       sum5 -= *v5++ * sum4;
9784c1414c8SBarry Smith 
9794c1414c8SBarry Smith       tmp[row++]=sum1;
9804c1414c8SBarry Smith       tmp[row++]=sum2;
9814c1414c8SBarry Smith       tmp[row++]=sum3;
9824c1414c8SBarry Smith       tmp[row++]=sum4;
9834c1414c8SBarry Smith       tmp[row++]=sum5;
9844c1414c8SBarry Smith       break;
9854c1414c8SBarry Smith     default:
986e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
9874c1414c8SBarry Smith     }
9884c1414c8SBarry Smith   }
9894c1414c8SBarry Smith   /* backward solve the upper triangular */
9904c1414c8SBarry Smith   for (i=node_max -1,row = n-1; i>=0; i--) {
9914c1414c8SBarry Smith     nsz = ns[i];
9924c1414c8SBarry Smith     aii = ai[row+1] -1;
9934c1414c8SBarry Smith     v1  = aa + aii;
9944c1414c8SBarry Smith     vi  = aj + aii;
9954c1414c8SBarry Smith     nz  = aii- ad[row];
9964c1414c8SBarry Smith     switch (nsz) {               /* Each loop in 'case' is unrolled */
9974c1414c8SBarry Smith     case 1:
9984c1414c8SBarry Smith       sum1 = tmp[row];
9994c1414c8SBarry Smith 
10004c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10014c1414c8SBarry Smith         vi   -=2;
10024c1414c8SBarry Smith         i0    = vi[2];
10034c1414c8SBarry Smith         i1    = vi[1];
10044c1414c8SBarry Smith         tmp0  = tmps[i0];
10054c1414c8SBarry Smith         tmp1  = tmps[i1];
10064c1414c8SBarry Smith         v1   -= 2;
10074c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10084c1414c8SBarry Smith       }
10094c1414c8SBarry Smith       if (j==1) {
10104c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10114c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10124c1414c8SBarry Smith       }
10134c1414c8SBarry Smith       x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10144c1414c8SBarry Smith       break;
10154c1414c8SBarry Smith     case 2:
10164c1414c8SBarry Smith       sum1 = tmp[row];
10174c1414c8SBarry Smith       sum2 = tmp[row -1];
10184c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10194c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10204c1414c8SBarry Smith         vi   -=2;
10214c1414c8SBarry Smith         i0    = vi[2];
10224c1414c8SBarry Smith         i1    = vi[1];
10234c1414c8SBarry Smith         tmp0  = tmps[i0];
10244c1414c8SBarry Smith         tmp1  = tmps[i1];
10254c1414c8SBarry Smith         v1   -= 2;
10264c1414c8SBarry Smith         v2   -= 2;
10274c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10284c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10294c1414c8SBarry Smith       }
10304c1414c8SBarry Smith       if (j==1) {
10314c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10324c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10334c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10344c1414c8SBarry Smith       }
10354c1414c8SBarry Smith 
10364c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10374c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10384c1414c8SBarry Smith       x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10394c1414c8SBarry Smith       break;
10404c1414c8SBarry Smith     case 3:
10414c1414c8SBarry Smith       sum1 = tmp[row];
10424c1414c8SBarry Smith       sum2 = tmp[row -1];
10434c1414c8SBarry Smith       sum3 = tmp[row -2];
10444c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10454c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10464c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10474c1414c8SBarry Smith         vi   -=2;
10484c1414c8SBarry Smith         i0    = vi[2];
10494c1414c8SBarry Smith         i1    = vi[1];
10504c1414c8SBarry Smith         tmp0  = tmps[i0];
10514c1414c8SBarry Smith         tmp1  = tmps[i1];
10524c1414c8SBarry Smith         v1   -= 2;
10534c1414c8SBarry Smith         v2   -= 2;
10544c1414c8SBarry Smith         v3   -= 2;
10554c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10564c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10574c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
10584c1414c8SBarry Smith       }
10594c1414c8SBarry Smith       if (j==1) {
10604c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10614c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
10624c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
10634c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
10644c1414c8SBarry Smith       }
10654c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
10664c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
10674c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10684c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
10694c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
10704c1414c8SBarry Smith       x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
10714c1414c8SBarry Smith 
10724c1414c8SBarry Smith       break;
10734c1414c8SBarry Smith     case 4:
10744c1414c8SBarry Smith       sum1 = tmp[row];
10754c1414c8SBarry Smith       sum2 = tmp[row -1];
10764c1414c8SBarry Smith       sum3 = tmp[row -2];
10774c1414c8SBarry Smith       sum4 = tmp[row -3];
10784c1414c8SBarry Smith       v2   = aa + ai[row]-1;
10794c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
10804c1414c8SBarry Smith       v4   = aa + ai[row -2]-1;
10814c1414c8SBarry Smith 
10824c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
10834c1414c8SBarry Smith         vi   -=2;
10844c1414c8SBarry Smith         i0    = vi[2];
10854c1414c8SBarry Smith         i1    = vi[1];
10864c1414c8SBarry Smith         tmp0  = tmps[i0];
10874c1414c8SBarry Smith         tmp1  = tmps[i1];
10884c1414c8SBarry Smith         v1   -= 2;
10894c1414c8SBarry Smith         v2   -= 2;
10904c1414c8SBarry Smith         v3   -= 2;
10914c1414c8SBarry Smith         v4   -= 2;
10924c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
10934c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
10944c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
10954c1414c8SBarry Smith         sum4 -= v4[2] * tmp0 + v4[1] * tmp1;
10964c1414c8SBarry Smith       }
10974c1414c8SBarry Smith       if (j==1) {
10984c1414c8SBarry Smith         tmp0  = tmps[*vi--];
10994c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
11004c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
11014c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
11024c1414c8SBarry Smith         sum4 -= *v4-- * tmp0;
11034c1414c8SBarry Smith       }
11044c1414c8SBarry Smith 
11054c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
11064c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
11074c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11084c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11094c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
11104c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11114c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11124c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
11134c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11144c1414c8SBarry Smith       x[*c--] = tmp[row] = sum4*a_a[ad[row]]; row--;
11154c1414c8SBarry Smith       break;
11164c1414c8SBarry Smith     case 5:
11174c1414c8SBarry Smith       sum1 = tmp[row];
11184c1414c8SBarry Smith       sum2 = tmp[row -1];
11194c1414c8SBarry Smith       sum3 = tmp[row -2];
11204c1414c8SBarry Smith       sum4 = tmp[row -3];
11214c1414c8SBarry Smith       sum5 = tmp[row -4];
11224c1414c8SBarry Smith       v2   = aa + ai[row]-1;
11234c1414c8SBarry Smith       v3   = aa + ai[row -1]-1;
11244c1414c8SBarry Smith       v4   = aa + ai[row -2]-1;
11254c1414c8SBarry Smith       v5   = aa + ai[row -3]-1;
11264c1414c8SBarry Smith       for (j=nz; j>1; j-=2) {
11274c1414c8SBarry Smith         vi   -= 2;
11284c1414c8SBarry Smith         i0    = vi[2];
11294c1414c8SBarry Smith         i1    = vi[1];
11304c1414c8SBarry Smith         tmp0  = tmps[i0];
11314c1414c8SBarry Smith         tmp1  = tmps[i1];
11324c1414c8SBarry Smith         v1   -= 2;
11334c1414c8SBarry Smith         v2   -= 2;
11344c1414c8SBarry Smith         v3   -= 2;
11354c1414c8SBarry Smith         v4   -= 2;
11364c1414c8SBarry Smith         v5   -= 2;
11374c1414c8SBarry Smith         sum1 -= v1[2] * tmp0 + v1[1] * tmp1;
11384c1414c8SBarry Smith         sum2 -= v2[2] * tmp0 + v2[1] * tmp1;
11394c1414c8SBarry Smith         sum3 -= v3[2] * tmp0 + v3[1] * tmp1;
11404c1414c8SBarry Smith         sum4 -= v4[2] * tmp0 + v4[1] * tmp1;
11414c1414c8SBarry Smith         sum5 -= v5[2] * tmp0 + v5[1] * tmp1;
11424c1414c8SBarry Smith       }
11434c1414c8SBarry Smith       if (j==1) {
11444c1414c8SBarry Smith         tmp0  = tmps[*vi--];
11454c1414c8SBarry Smith         sum1 -= *v1-- * tmp0;
11464c1414c8SBarry Smith         sum2 -= *v2-- * tmp0;
11474c1414c8SBarry Smith         sum3 -= *v3-- * tmp0;
11484c1414c8SBarry Smith         sum4 -= *v4-- * tmp0;
11494c1414c8SBarry Smith         sum5 -= *v5-- * tmp0;
11504c1414c8SBarry Smith       }
11514c1414c8SBarry Smith 
11524c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum1*a_a[ad[row]]; row--;
11534c1414c8SBarry Smith       sum2   -= *v2-- * tmp0;
11544c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11554c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11564c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11574c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum2*a_a[ad[row]]; row--;
11584c1414c8SBarry Smith       sum3   -= *v3-- * tmp0;
11594c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11604c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11614c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum3*a_a[ad[row]]; row--;
11624c1414c8SBarry Smith       sum4   -= *v4-- * tmp0;
11634c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11644c1414c8SBarry Smith       tmp0    = x[*c--] = tmp[row] = sum4*a_a[ad[row]]; row--;
11654c1414c8SBarry Smith       sum5   -= *v5-- * tmp0;
11664c1414c8SBarry Smith       x[*c--] = tmp[row] = sum5*a_a[ad[row]]; row--;
11674c1414c8SBarry Smith       break;
11684c1414c8SBarry Smith     default:
1169e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
11704c1414c8SBarry Smith     }
11714c1414c8SBarry Smith   }
11724c1414c8SBarry Smith   ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr);
11734c1414c8SBarry Smith   ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr);
11743649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
11754c1414c8SBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
1176dc0b31edSSatish Balay   ierr = PetscLogFlops(2.0*a->nz - A->cmap->n);CHKERRQ(ierr);
11774c1414c8SBarry Smith   PetscFunctionReturn(0);
11784c1414c8SBarry Smith }
11794c1414c8SBarry Smith 
118028f1b45aSHong Zhang #undef __FUNCT__
118128f1b45aSHong Zhang #define __FUNCT__ "MatLUFactorNumeric_SeqAIJ_Inode"
118228f1b45aSHong Zhang PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode(Mat B,Mat A,const MatFactorInfo *info)
118328f1b45aSHong Zhang {
118428f1b45aSHong Zhang   Mat             C     =B;
118528f1b45aSHong Zhang   Mat_SeqAIJ      *a    =(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)C->data;
118628f1b45aSHong Zhang   IS              isrow = b->row,isicol = b->icol;
118728f1b45aSHong Zhang   PetscErrorCode  ierr;
118828f1b45aSHong Zhang   const PetscInt  *r,*ic,*ics;
118928f1b45aSHong Zhang   const PetscInt  n=A->rmap->n,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bdiag=b->diag;
119028f1b45aSHong Zhang   PetscInt        i,j,k,nz,nzL,row,*pj;
119128f1b45aSHong Zhang   const PetscInt  *ajtmp,*bjtmp;
11929877982aSShri Abhyankar   MatScalar       *pc,*pc1,*pc2,*pc3,*pc4,mul1,mul2,mul3,mul4,*pv,*rtmp1,*rtmp2,*rtmp3,*rtmp4;
11939877982aSShri Abhyankar   const MatScalar *aa=a->a,*v,*v1,*v2,*v3,*v4;
119428f1b45aSHong Zhang   FactorShiftCtx  sctx;
11954f81c4b7SBarry Smith   const PetscInt  *ddiag;
119628f1b45aSHong Zhang   PetscReal       rs;
119728f1b45aSHong Zhang   MatScalar       d;
11984f81c4b7SBarry Smith   PetscInt        inod,nodesz,node_max,col;
11994f81c4b7SBarry Smith   const PetscInt  *ns;
120007b50cabSHong Zhang   PetscInt        *tmp_vec1,*tmp_vec2,*nsmap;
12010e95ead3SHong Zhang 
120228f1b45aSHong Zhang   PetscFunctionBegin;
120328f1b45aSHong Zhang   /* MatPivotSetUp(): initialize shift context sctx */
120428f1b45aSHong Zhang   ierr = PetscMemzero(&sctx,sizeof(FactorShiftCtx));CHKERRQ(ierr);
120528f1b45aSHong Zhang 
1206f4db908eSBarry Smith   if (info->shifttype == (PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) { /* set sctx.shift_top=max{rs} */
120728f1b45aSHong Zhang     ddiag          = a->diag;
120828f1b45aSHong Zhang     sctx.shift_top = info->zeropivot;
120928f1b45aSHong Zhang     for (i=0; i<n; i++) {
121028f1b45aSHong Zhang       /* calculate sum(|aij|)-RealPart(aii), amt of shift needed for this row */
121128f1b45aSHong Zhang       d  = (aa)[ddiag[i]];
121228f1b45aSHong Zhang       rs = -PetscAbsScalar(d) - PetscRealPart(d);
121328f1b45aSHong Zhang       v  = aa+ai[i];
121428f1b45aSHong Zhang       nz = ai[i+1] - ai[i];
12152205254eSKarl Rupp       for (j=0; j<nz; j++) rs += PetscAbsScalar(v[j]);
121628f1b45aSHong Zhang       if (rs>sctx.shift_top) sctx.shift_top = rs;
121728f1b45aSHong Zhang     }
121828f1b45aSHong Zhang     sctx.shift_top *= 1.1;
121928f1b45aSHong Zhang     sctx.nshift_max = 5;
122028f1b45aSHong Zhang     sctx.shift_lo   = 0.;
122128f1b45aSHong Zhang     sctx.shift_hi   = 1.;
122228f1b45aSHong Zhang   }
122328f1b45aSHong Zhang 
122428f1b45aSHong Zhang   ierr = ISGetIndices(isrow,&r);CHKERRQ(ierr);
122528f1b45aSHong Zhang   ierr = ISGetIndices(isicol,&ic);CHKERRQ(ierr);
122668785679SHong Zhang 
12271795a4d1SJed Brown   ierr  = PetscCalloc4(n,&rtmp1,n,&rtmp2,n,&rtmp3,n,&rtmp4);CHKERRQ(ierr);
122828f1b45aSHong Zhang   ics   = ic;
122928f1b45aSHong Zhang 
123028f1b45aSHong Zhang   node_max = a->inode.node_count;
123128f1b45aSHong Zhang   ns       = a->inode.size;
1232e7e72b3dSBarry Smith   if (!ns) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Matrix without inode information");
123328f1b45aSHong Zhang 
12349877982aSShri Abhyankar   /* If max inode size > 4, split it into two inodes.*/
123568785679SHong Zhang   /* also map the inode sizes according to the ordering */
1236854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tmp_vec1);CHKERRQ(ierr);
123768785679SHong Zhang   for (i=0,j=0; i<node_max; ++i,++j) {
1238b1550197SShri Abhyankar     if (ns[i] > 4) {
1239048b5e81SShri Abhyankar       tmp_vec1[j] = 4;
124068785679SHong Zhang       ++j;
124168785679SHong Zhang       tmp_vec1[j] = ns[i] - tmp_vec1[j-1];
124268785679SHong Zhang     } else {
124368785679SHong Zhang       tmp_vec1[j] = ns[i];
124468785679SHong Zhang     }
124568785679SHong Zhang   }
124668785679SHong Zhang   /* Use the correct node_max */
124768785679SHong Zhang   node_max = j;
124868785679SHong Zhang 
124968785679SHong Zhang   /* Now reorder the inode info based on mat re-ordering info */
125068785679SHong Zhang   /* First create a row -> inode_size_array_index map */
1251854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&nsmap);CHKERRQ(ierr);
1252854ce69bSBarry Smith   ierr = PetscMalloc1(node_max+1,&tmp_vec2);CHKERRQ(ierr);
125368785679SHong Zhang   for (i=0,row=0; i<node_max; i++) {
125468785679SHong Zhang     nodesz = tmp_vec1[i];
125568785679SHong Zhang     for (j=0; j<nodesz; j++,row++) {
125668785679SHong Zhang       nsmap[row] = i;
125768785679SHong Zhang     }
125868785679SHong Zhang   }
125968785679SHong Zhang   /* Using nsmap, create a reordered ns structure */
126068785679SHong Zhang   for (i=0,j=0; i< node_max; i++) {
126168785679SHong Zhang     nodesz      = tmp_vec1[nsmap[r[j]]];     /* here the reordered row_no is in r[] */
126268785679SHong Zhang     tmp_vec2[i] = nodesz;
126368785679SHong Zhang     j          += nodesz;
126468785679SHong Zhang   }
126568785679SHong Zhang   ierr = PetscFree(nsmap);CHKERRQ(ierr);
126668785679SHong Zhang   ierr = PetscFree(tmp_vec1);CHKERRQ(ierr);
1267b89f182dSHong Zhang 
126868785679SHong Zhang   /* Now use the correct ns */
126968785679SHong Zhang   ns = tmp_vec2;
127068785679SHong Zhang 
127128f1b45aSHong Zhang   do {
127207b50cabSHong Zhang     sctx.newshift = PETSC_FALSE;
127328f1b45aSHong Zhang     /* Now loop over each block-row, and do the factorization */
127428f1b45aSHong Zhang     for (inod=0,i=0; inod<node_max; inod++) { /* i: row index; inod: inode index */
127528f1b45aSHong Zhang       nodesz = ns[inod];
127628f1b45aSHong Zhang 
127728f1b45aSHong Zhang       switch (nodesz) {
127828f1b45aSHong Zhang       case 1:
127968785679SHong Zhang         /*----------*/
1280b89f182dSHong Zhang         /* zero rtmp1 */
128128f1b45aSHong Zhang         /* L part */
128228f1b45aSHong Zhang         nz    = bi[i+1] - bi[i];
128328f1b45aSHong Zhang         bjtmp = bj + bi[i];
1284b89f182dSHong Zhang         for (j=0; j<nz; j++) rtmp1[bjtmp[j]] = 0.0;
128528f1b45aSHong Zhang 
128628f1b45aSHong Zhang         /* U part */
128728f1b45aSHong Zhang         nz    = bdiag[i]-bdiag[i+1];
128828f1b45aSHong Zhang         bjtmp = bj + bdiag[i+1]+1;
1289b89f182dSHong Zhang         for (j=0; j<nz; j++) rtmp1[bjtmp[j]] = 0.0;
129028f1b45aSHong Zhang 
129128f1b45aSHong Zhang         /* load in initial (unfactored row) */
129228f1b45aSHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
129328f1b45aSHong Zhang         ajtmp = aj + ai[r[i]];
129428f1b45aSHong Zhang         v     = aa + ai[r[i]];
12952205254eSKarl Rupp         for (j=0; j<nz; j++) rtmp1[ics[ajtmp[j]]] = v[j];
12962205254eSKarl Rupp 
129728f1b45aSHong Zhang         /* ZeropivotApply() */
1298b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount;  /* shift the diagonal of the matrix */
129928f1b45aSHong Zhang 
130028f1b45aSHong Zhang         /* elimination */
130128f1b45aSHong Zhang         bjtmp = bj + bi[i];
130228f1b45aSHong Zhang         row   = *bjtmp++;
130328f1b45aSHong Zhang         nzL   = bi[i+1] - bi[i];
130428f1b45aSHong Zhang         for (k=0; k < nzL; k++) {
1305b89f182dSHong Zhang           pc = rtmp1 + row;
130628f1b45aSHong Zhang           if (*pc != 0.0) {
130728f1b45aSHong Zhang             pv   = b->a + bdiag[row];
1308b89f182dSHong Zhang             mul1 = *pc * (*pv);
1309b89f182dSHong Zhang             *pc  = mul1;
131028f1b45aSHong Zhang             pj   = b->j + bdiag[row+1]+1; /* beginning of U(row,:) */
131128f1b45aSHong Zhang             pv   = b->a + bdiag[row+1]+1;
131228f1b45aSHong Zhang             nz   = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
1313b89f182dSHong Zhang             for (j=0; j<nz; j++) rtmp1[pj[j]] -= mul1 * pv[j];
131428b1a77fSLisandro Dalcin             ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
131528f1b45aSHong Zhang           }
131628f1b45aSHong Zhang           row = *bjtmp++;
131728f1b45aSHong Zhang         }
131828f1b45aSHong Zhang 
131928f1b45aSHong Zhang         /* finished row so stick it into b->a */
132028f1b45aSHong Zhang         rs = 0.0;
132128f1b45aSHong Zhang         /* L part */
132228f1b45aSHong Zhang         pv = b->a + bi[i];
132328f1b45aSHong Zhang         pj = b->j + bi[i];
132428f1b45aSHong Zhang         nz = bi[i+1] - bi[i];
132528f1b45aSHong Zhang         for (j=0; j<nz; j++) {
1326b89f182dSHong Zhang           pv[j] = rtmp1[pj[j]]; rs += PetscAbsScalar(pv[j]);
132728f1b45aSHong Zhang         }
132828f1b45aSHong Zhang 
132928f1b45aSHong Zhang         /* U part */
133028f1b45aSHong Zhang         pv = b->a + bdiag[i+1]+1;
133128f1b45aSHong Zhang         pj = b->j + bdiag[i+1]+1;
133228f1b45aSHong Zhang         nz = bdiag[i] - bdiag[i+1]-1;
133328f1b45aSHong Zhang         for (j=0; j<nz; j++) {
1334b89f182dSHong Zhang           pv[j] = rtmp1[pj[j]]; rs += PetscAbsScalar(pv[j]);
133528f1b45aSHong Zhang         }
133628f1b45aSHong Zhang 
1337b89f182dSHong Zhang         /* Check zero pivot */
133828f1b45aSHong Zhang         sctx.rs = rs;
1339b89f182dSHong Zhang         sctx.pv = rtmp1[i];
1340d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i);CHKERRQ(ierr);
134107b50cabSHong Zhang         if (sctx.newshift) break;
134228f1b45aSHong Zhang 
134328f1b45aSHong Zhang         /* Mark diagonal and invert diagonal for simplier triangular solves */
134428f1b45aSHong Zhang         pv  = b->a + bdiag[i];
1345b89f182dSHong Zhang         *pv = 1.0/sctx.pv; /* sctx.pv = rtmp1[i]+shiftamount if shifttype==MAT_SHIFT_INBLOCKS */
134628f1b45aSHong Zhang         break;
134728f1b45aSHong Zhang 
134828f1b45aSHong Zhang       case 2:
134928f1b45aSHong Zhang         /*----------*/
1350b89f182dSHong Zhang         /* zero rtmp1 and rtmp2 */
135128f1b45aSHong Zhang         /* L part */
135228f1b45aSHong Zhang         nz    = bi[i+1] - bi[i];
135328f1b45aSHong Zhang         bjtmp = bj + bi[i];
135428f1b45aSHong Zhang         for  (j=0; j<nz; j++) {
135568785679SHong Zhang           col        = bjtmp[j];
1356b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0;
135728f1b45aSHong Zhang         }
135828f1b45aSHong Zhang 
135928f1b45aSHong Zhang         /* U part */
136028f1b45aSHong Zhang         nz    = bdiag[i]-bdiag[i+1];
136128f1b45aSHong Zhang         bjtmp = bj + bdiag[i+1]+1;
136228f1b45aSHong Zhang         for  (j=0; j<nz; j++) {
136368785679SHong Zhang           col        = bjtmp[j];
1364b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0;
136528f1b45aSHong Zhang         }
136628f1b45aSHong Zhang 
136728f1b45aSHong Zhang         /* load in initial (unfactored row) */
136828f1b45aSHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
136928f1b45aSHong Zhang         ajtmp = aj + ai[r[i]];
137028f1b45aSHong Zhang         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1];
137128f1b45aSHong Zhang         for (j=0; j<nz; j++) {
137268785679SHong Zhang           col        = ics[ajtmp[j]];
1373b89f182dSHong Zhang           rtmp1[col] = v1[j]; rtmp2[col] = v2[j];
137428f1b45aSHong Zhang         }
137528f1b45aSHong Zhang         /* ZeropivotApply(): shift the diagonal of the matrix  */
1376b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount;
137728f1b45aSHong Zhang 
137828f1b45aSHong Zhang         /* elimination */
137928f1b45aSHong Zhang         bjtmp = bj + bi[i];
138028f1b45aSHong Zhang         row   = *bjtmp++; /* pivot row */
138128f1b45aSHong Zhang         nzL   = bi[i+1] - bi[i];
138228f1b45aSHong Zhang         for (k=0; k < nzL; k++) {
1383b89f182dSHong Zhang           pc1 = rtmp1 + row;
1384b89f182dSHong Zhang           pc2 = rtmp2 + row;
138528f1b45aSHong Zhang           if (*pc1 != 0.0 || *pc2 != 0.0) {
138628f1b45aSHong Zhang             pv   = b->a + bdiag[row];
1387b89f182dSHong Zhang             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv);
1388b89f182dSHong Zhang             *pc1 = mul1;       *pc2 = mul2;
138928f1b45aSHong Zhang 
139028f1b45aSHong Zhang             pj = b->j + bdiag[row+1]+1;     /* beginning of U(row,:) */
139128f1b45aSHong Zhang             pv = b->a + bdiag[row+1]+1;
139228f1b45aSHong Zhang             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
139328f1b45aSHong Zhang             for (j=0; j<nz; j++) {
139468785679SHong Zhang               col         = pj[j];
1395b89f182dSHong Zhang               rtmp1[col] -= mul1 * pv[j];
1396b89f182dSHong Zhang               rtmp2[col] -= mul2 * pv[j];
139728f1b45aSHong Zhang             }
139828b1a77fSLisandro Dalcin             ierr = PetscLogFlops(2+4*nz);CHKERRQ(ierr);
139928f1b45aSHong Zhang           }
140028f1b45aSHong Zhang           row = *bjtmp++;
140128f1b45aSHong Zhang         }
140228f1b45aSHong Zhang 
1403b89f182dSHong Zhang         /* finished row i; check zero pivot, then stick row i into b->a */
140428f1b45aSHong Zhang         rs = 0.0;
140528f1b45aSHong Zhang         /* L part */
1406b89f182dSHong Zhang         pc1 = b->a + bi[i];
140728f1b45aSHong Zhang         pj  = b->j + bi[i];
140828f1b45aSHong Zhang         nz  = bi[i+1] - bi[i];
140928f1b45aSHong Zhang         for (j=0; j<nz; j++) {
141068785679SHong Zhang           col    = pj[j];
14110e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
141228f1b45aSHong Zhang         }
141328f1b45aSHong Zhang         /* U part */
1414b89f182dSHong Zhang         pc1 = b->a + bdiag[i+1]+1;
141528f1b45aSHong Zhang         pj  = b->j + bdiag[i+1]+1;
14160e7a5c2bSHong Zhang         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
141728f1b45aSHong Zhang         for (j=0; j<nz; j++) {
141868785679SHong Zhang           col    = pj[j];
14190e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
142028f1b45aSHong Zhang         }
142128f1b45aSHong Zhang 
142228f1b45aSHong Zhang         sctx.rs = rs;
1423b89f182dSHong Zhang         sctx.pv = rtmp1[i];
1424d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i);CHKERRQ(ierr);
142507b50cabSHong Zhang         if (sctx.newshift) break;
1426b89f182dSHong Zhang         pc1  = b->a + bdiag[i]; /* Mark diagonal */
1427b89f182dSHong Zhang         *pc1 = 1.0/sctx.pv;
1428b89f182dSHong Zhang 
1429b89f182dSHong Zhang         /* Now take care of diagonal 2x2 block. */
1430b89f182dSHong Zhang         pc2 = rtmp2 + i;
1431b89f182dSHong Zhang         if (*pc2 != 0.0) {
1432b89f182dSHong Zhang           mul1 = (*pc2)*(*pc1); /* *pc1=diag[i] is inverted! */
1433b89f182dSHong Zhang           *pc2 = mul1;          /* insert L entry */
1434b89f182dSHong Zhang           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
1435b89f182dSHong Zhang           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
1436b89f182dSHong Zhang           for (j=0; j<nz; j++) {
1437b89f182dSHong Zhang             col = pj[j]; rtmp2[col] -= mul1 * rtmp1[col];
143828f1b45aSHong Zhang           }
143928b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
1440b89f182dSHong Zhang         }
1441b89f182dSHong Zhang 
1442b89f182dSHong Zhang         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
1443b89f182dSHong Zhang         rs = 0.0;
1444b89f182dSHong Zhang         /* L part */
1445b89f182dSHong Zhang         pc2 = b->a + bi[i+1];
1446b89f182dSHong Zhang         pj  = b->j + bi[i+1];
1447b89f182dSHong Zhang         nz  = bi[i+2] - bi[i+1];
1448b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1449b89f182dSHong Zhang           col    = pj[j];
14500e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1451b89f182dSHong Zhang         }
1452b89f182dSHong Zhang         /* U part */
1453b89f182dSHong Zhang         pc2 = b->a + bdiag[i+2]+1;
14540e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+2]+1;
14550e7a5c2bSHong Zhang         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
1456b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1457b89f182dSHong Zhang           col    = pj[j];
14580e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1459b89f182dSHong Zhang         }
1460b89f182dSHong Zhang 
146128f1b45aSHong Zhang         sctx.rs = rs;
1462b89f182dSHong Zhang         sctx.pv = rtmp2[i+1];
1463d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i+1);CHKERRQ(ierr);
146407b50cabSHong Zhang         if (sctx.newshift) break;
146528f1b45aSHong Zhang         pc2  = b->a + bdiag[i+1];
1466b89f182dSHong Zhang         *pc2 = 1.0/sctx.pv;
146728f1b45aSHong Zhang         break;
1468b89f182dSHong Zhang 
146968785679SHong Zhang       case 3:
147068785679SHong Zhang         /*----------*/
147168785679SHong Zhang         /* zero rtmp */
147268785679SHong Zhang         /* L part */
147368785679SHong Zhang         nz    = bi[i+1] - bi[i];
147468785679SHong Zhang         bjtmp = bj + bi[i];
147568785679SHong Zhang         for  (j=0; j<nz; j++) {
147668785679SHong Zhang           col        = bjtmp[j];
1477b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;
147868785679SHong Zhang         }
147968785679SHong Zhang 
148068785679SHong Zhang         /* U part */
148168785679SHong Zhang         nz    = bdiag[i]-bdiag[i+1];
148268785679SHong Zhang         bjtmp = bj + bdiag[i+1]+1;
148368785679SHong Zhang         for  (j=0; j<nz; j++) {
148468785679SHong Zhang           col        = bjtmp[j];
1485b89f182dSHong Zhang           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;
148668785679SHong Zhang         }
148768785679SHong Zhang 
148868785679SHong Zhang         /* load in initial (unfactored row) */
148968785679SHong Zhang         nz    = ai[r[i]+1] - ai[r[i]];
149068785679SHong Zhang         ajtmp = aj + ai[r[i]];
149168785679SHong Zhang         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1]; v3 = aa + ai[r[i]+2];
149268785679SHong Zhang         for (j=0; j<nz; j++) {
149368785679SHong Zhang           col        = ics[ajtmp[j]];
1494b89f182dSHong Zhang           rtmp1[col] = v1[j]; rtmp2[col] = v2[j]; rtmp3[col] = v3[j];
149568785679SHong Zhang         }
149668785679SHong Zhang         /* ZeropivotApply(): shift the diagonal of the matrix  */
1497b89f182dSHong Zhang         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount; rtmp3[i+2] += sctx.shift_amount;
149868785679SHong Zhang 
149968785679SHong Zhang         /* elimination */
150068785679SHong Zhang         bjtmp = bj + bi[i];
150168785679SHong Zhang         row   = *bjtmp++; /* pivot row */
150268785679SHong Zhang         nzL   = bi[i+1] - bi[i];
150368785679SHong Zhang         for (k=0; k < nzL; k++) {
1504b89f182dSHong Zhang           pc1 = rtmp1 + row;
1505b89f182dSHong Zhang           pc2 = rtmp2 + row;
1506b89f182dSHong Zhang           pc3 = rtmp3 + row;
150768785679SHong Zhang           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 != 0.0) {
150868785679SHong Zhang             pv   = b->a + bdiag[row];
1509b89f182dSHong Zhang             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv); mul3 = *pc3*(*pv);
1510b89f182dSHong Zhang             *pc1 = mul1; *pc2 = mul2; *pc3 = mul3;
151168785679SHong Zhang 
151268785679SHong Zhang             pj = b->j + bdiag[row+1]+1;     /* beginning of U(row,:) */
151368785679SHong Zhang             pv = b->a + bdiag[row+1]+1;
151468785679SHong Zhang             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
151568785679SHong Zhang             for (j=0; j<nz; j++) {
151668785679SHong Zhang               col         = pj[j];
1517b89f182dSHong Zhang               rtmp1[col] -= mul1 * pv[j];
1518b89f182dSHong Zhang               rtmp2[col] -= mul2 * pv[j];
1519b89f182dSHong Zhang               rtmp3[col] -= mul3 * pv[j];
152068785679SHong Zhang             }
152128b1a77fSLisandro Dalcin             ierr = PetscLogFlops(3+6*nz);CHKERRQ(ierr);
152268785679SHong Zhang           }
152368785679SHong Zhang           row = *bjtmp++;
152468785679SHong Zhang         }
152568785679SHong Zhang 
1526b89f182dSHong Zhang         /* finished row i; check zero pivot, then stick row i into b->a */
1527b89f182dSHong Zhang         rs = 0.0;
1528b89f182dSHong Zhang         /* L part */
1529b89f182dSHong Zhang         pc1 = b->a + bi[i];
1530b89f182dSHong Zhang         pj  = b->j + bi[i];
1531b89f182dSHong Zhang         nz  = bi[i+1] - bi[i];
1532b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1533b89f182dSHong Zhang           col    = pj[j];
15340e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
1535b89f182dSHong Zhang         }
1536b89f182dSHong Zhang         /* U part */
1537b89f182dSHong Zhang         pc1 = b->a + bdiag[i+1]+1;
1538b89f182dSHong Zhang         pj  = b->j + bdiag[i+1]+1;
15390e7a5c2bSHong Zhang         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
1540b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1541b89f182dSHong Zhang           col    = pj[j];
15420e7a5c2bSHong Zhang           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
1543b89f182dSHong Zhang         }
154468785679SHong Zhang 
1545b89f182dSHong Zhang         sctx.rs = rs;
1546b89f182dSHong Zhang         sctx.pv = rtmp1[i];
1547d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i);CHKERRQ(ierr);
154807b50cabSHong Zhang         if (sctx.newshift) break;
1549b89f182dSHong Zhang         pc1  = b->a + bdiag[i]; /* Mark diag[i] */
1550b89f182dSHong Zhang         *pc1 = 1.0/sctx.pv;
1551b89f182dSHong Zhang 
1552b89f182dSHong Zhang         /* Now take care of 1st column of diagonal 3x3 block. */
1553b89f182dSHong Zhang         pc2 = rtmp2 + i;
1554b89f182dSHong Zhang         pc3 = rtmp3 + i;
1555b89f182dSHong Zhang         if (*pc2 != 0.0 || *pc3 != 0.0) {
1556b89f182dSHong Zhang           mul2 = (*pc2)*(*pc1); *pc2 = mul2;
1557b89f182dSHong Zhang           mul3 = (*pc3)*(*pc1); *pc3 = mul3;
155868785679SHong Zhang           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
155968785679SHong Zhang           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
156068785679SHong Zhang           for (j=0; j<nz; j++) {
156168785679SHong Zhang             col         = pj[j];
1562b89f182dSHong Zhang             rtmp2[col] -= mul2 * rtmp1[col];
1563b89f182dSHong Zhang             rtmp3[col] -= mul3 * rtmp1[col];
156468785679SHong Zhang           }
156528b1a77fSLisandro Dalcin           ierr = PetscLogFlops(2+4*nz);CHKERRQ(ierr);
156668785679SHong Zhang         }
156768785679SHong Zhang 
1568b89f182dSHong Zhang         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
1569b89f182dSHong Zhang         rs = 0.0;
1570b89f182dSHong Zhang         /* L part */
1571b89f182dSHong Zhang         pc2 = b->a + bi[i+1];
1572b89f182dSHong Zhang         pj  = b->j + bi[i+1];
1573b89f182dSHong Zhang         nz  = bi[i+2] - bi[i+1];
1574b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1575b89f182dSHong Zhang           col    = pj[j];
15760e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1577b89f182dSHong Zhang         }
1578b89f182dSHong Zhang         /* U part */
1579b89f182dSHong Zhang         pc2 = b->a + bdiag[i+2]+1;
15800e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+2]+1;
15810e7a5c2bSHong Zhang         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
1582b89f182dSHong Zhang         for (j=0; j<nz; j++) {
1583b89f182dSHong Zhang           col    = pj[j];
15840e7a5c2bSHong Zhang           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
1585b89f182dSHong Zhang         }
1586b89f182dSHong Zhang 
1587b89f182dSHong Zhang         sctx.rs = rs;
1588b89f182dSHong Zhang         sctx.pv = rtmp2[i+1];
1589d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i+1);CHKERRQ(ierr);
159007b50cabSHong Zhang         if (sctx.newshift) break;
1591b89f182dSHong Zhang         pc2  = b->a + bdiag[i+1];
1592b89f182dSHong Zhang         *pc2 = 1.0/sctx.pv; /* Mark diag[i+1] */
1593b89f182dSHong Zhang 
1594b89f182dSHong Zhang         /* Now take care of 2nd column of diagonal 3x3 block. */
1595b89f182dSHong Zhang         pc3 = rtmp3 + i+1;
159668785679SHong Zhang         if (*pc3 != 0.0) {
1597b89f182dSHong Zhang           mul3 = (*pc3)*(*pc2); *pc3 = mul3;
159868785679SHong Zhang           pj   = b->j + bdiag[i+2]+1;     /* beginning of U(i+1,:) */
159968785679SHong Zhang           nz   = bdiag[i+1]-bdiag[i+2]-1; /* num of entries in U(i+1,:) excluding diag */
160068785679SHong Zhang           for (j=0; j<nz; j++) {
160168785679SHong Zhang             col         = pj[j];
1602b89f182dSHong Zhang             rtmp3[col] -= mul3 * rtmp2[col];
160368785679SHong Zhang           }
160428b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
160568785679SHong Zhang         }
160668785679SHong Zhang 
1607b89f182dSHong Zhang         /* finished i+2; check zero pivot, then stick row i+2 into b->a */
160868785679SHong Zhang         rs = 0.0;
160968785679SHong Zhang         /* L part */
1610b89f182dSHong Zhang         pc3 = b->a + bi[i+2];
1611b89f182dSHong Zhang         pj  = b->j + bi[i+2];
1612b89f182dSHong Zhang         nz  = bi[i+3] - bi[i+2];
161368785679SHong Zhang         for (j=0; j<nz; j++) {
161468785679SHong Zhang           col    = pj[j];
16150e7a5c2bSHong Zhang           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
161668785679SHong Zhang         }
161768785679SHong Zhang         /* U part */
1618b89f182dSHong Zhang         pc3 = b->a + bdiag[i+3]+1;
16190e7a5c2bSHong Zhang         pj  = b->j + bdiag[i+3]+1;
16200e7a5c2bSHong Zhang         nz  = bdiag[i+2] - bdiag[i+3] - 1; /* exclude diagonal */
162168785679SHong Zhang         for (j=0; j<nz; j++) {
162268785679SHong Zhang           col    = pj[j];
16230e7a5c2bSHong Zhang           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
162468785679SHong Zhang         }
162568785679SHong Zhang 
162668785679SHong Zhang         sctx.rs = rs;
1627b89f182dSHong Zhang         sctx.pv = rtmp3[i+2];
1628d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i+2);CHKERRQ(ierr);
162907b50cabSHong Zhang         if (sctx.newshift) break;
163068785679SHong Zhang         pc3  = b->a + bdiag[i+2];
1631b89f182dSHong Zhang         *pc3 = 1.0/sctx.pv; /* Mark diag[i+2] */
163268785679SHong Zhang         break;
16339877982aSShri Abhyankar       case 4:
16349877982aSShri Abhyankar         /*----------*/
16359877982aSShri Abhyankar         /* zero rtmp */
16369877982aSShri Abhyankar         /* L part */
16379877982aSShri Abhyankar         nz    = bi[i+1] - bi[i];
16389877982aSShri Abhyankar         bjtmp = bj + bi[i];
16399877982aSShri Abhyankar         for  (j=0; j<nz; j++) {
16409877982aSShri Abhyankar           col        = bjtmp[j];
16419877982aSShri Abhyankar           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0;rtmp4[col] = 0.0;
16429877982aSShri Abhyankar         }
16439877982aSShri Abhyankar 
16449877982aSShri Abhyankar         /* U part */
16459877982aSShri Abhyankar         nz    = bdiag[i]-bdiag[i+1];
16469877982aSShri Abhyankar         bjtmp = bj + bdiag[i+1]+1;
16479877982aSShri Abhyankar         for  (j=0; j<nz; j++) {
16489877982aSShri Abhyankar           col        = bjtmp[j];
16499877982aSShri Abhyankar           rtmp1[col] = 0.0; rtmp2[col] = 0.0; rtmp3[col] = 0.0; rtmp4[col] = 0.0;
16509877982aSShri Abhyankar         }
16519877982aSShri Abhyankar 
16529877982aSShri Abhyankar         /* load in initial (unfactored row) */
16539877982aSShri Abhyankar         nz    = ai[r[i]+1] - ai[r[i]];
16549877982aSShri Abhyankar         ajtmp = aj + ai[r[i]];
16559877982aSShri Abhyankar         v1    = aa + ai[r[i]]; v2 = aa + ai[r[i]+1]; v3 = aa + ai[r[i]+2]; v4 = aa + ai[r[i]+3];
16569877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16579877982aSShri Abhyankar           col        = ics[ajtmp[j]];
16589877982aSShri Abhyankar           rtmp1[col] = v1[j]; rtmp2[col] = v2[j]; rtmp3[col] = v3[j]; rtmp4[col] = v4[j];
16599877982aSShri Abhyankar         }
16609877982aSShri Abhyankar         /* ZeropivotApply(): shift the diagonal of the matrix  */
16619877982aSShri Abhyankar         rtmp1[i] += sctx.shift_amount; rtmp2[i+1] += sctx.shift_amount; rtmp3[i+2] += sctx.shift_amount; rtmp4[i+3] += sctx.shift_amount;
16629877982aSShri Abhyankar 
16639877982aSShri Abhyankar         /* elimination */
16649877982aSShri Abhyankar         bjtmp = bj + bi[i];
16659877982aSShri Abhyankar         row   = *bjtmp++; /* pivot row */
16669877982aSShri Abhyankar         nzL   = bi[i+1] - bi[i];
16679877982aSShri Abhyankar         for (k=0; k < nzL; k++) {
16689877982aSShri Abhyankar           pc1 = rtmp1 + row;
16699877982aSShri Abhyankar           pc2 = rtmp2 + row;
16709877982aSShri Abhyankar           pc3 = rtmp3 + row;
16719877982aSShri Abhyankar           pc4 = rtmp4 + row;
16729877982aSShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 != 0.0 || *pc4 != 0.0) {
16739877982aSShri Abhyankar             pv   = b->a + bdiag[row];
16749877982aSShri Abhyankar             mul1 = *pc1*(*pv); mul2 = *pc2*(*pv); mul3 = *pc3*(*pv); mul4 = *pc4*(*pv);
16759877982aSShri Abhyankar             *pc1 = mul1; *pc2 = mul2; *pc3 = mul3; *pc4 = mul4;
16769877982aSShri Abhyankar 
16779877982aSShri Abhyankar             pj = b->j + bdiag[row+1]+1; /* beginning of U(row,:) */
16789877982aSShri Abhyankar             pv = b->a + bdiag[row+1]+1;
16799877982aSShri Abhyankar             nz = bdiag[row]-bdiag[row+1]-1; /* num of entries in U(row,:) excluding diag */
16809877982aSShri Abhyankar             for (j=0; j<nz; j++) {
16819877982aSShri Abhyankar               col         = pj[j];
16829877982aSShri Abhyankar               rtmp1[col] -= mul1 * pv[j];
16839877982aSShri Abhyankar               rtmp2[col] -= mul2 * pv[j];
16849877982aSShri Abhyankar               rtmp3[col] -= mul3 * pv[j];
16859877982aSShri Abhyankar               rtmp4[col] -= mul4 * pv[j];
16869877982aSShri Abhyankar             }
168728b1a77fSLisandro Dalcin             ierr = PetscLogFlops(4+8*nz);CHKERRQ(ierr);
16889877982aSShri Abhyankar           }
16899877982aSShri Abhyankar           row = *bjtmp++;
16909877982aSShri Abhyankar         }
16919877982aSShri Abhyankar 
16929877982aSShri Abhyankar         /* finished row i; check zero pivot, then stick row i into b->a */
16939877982aSShri Abhyankar         rs = 0.0;
16949877982aSShri Abhyankar         /* L part */
16959877982aSShri Abhyankar         pc1 = b->a + bi[i];
16969877982aSShri Abhyankar         pj  = b->j + bi[i];
16979877982aSShri Abhyankar         nz  = bi[i+1] - bi[i];
16989877982aSShri Abhyankar         for (j=0; j<nz; j++) {
16999877982aSShri Abhyankar           col    = pj[j];
17009877982aSShri Abhyankar           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
17019877982aSShri Abhyankar         }
17029877982aSShri Abhyankar         /* U part */
17039877982aSShri Abhyankar         pc1 = b->a + bdiag[i+1]+1;
17049877982aSShri Abhyankar         pj  = b->j + bdiag[i+1]+1;
17059877982aSShri Abhyankar         nz  = bdiag[i] - bdiag[i+1] - 1; /* exclude diagonal */
17069877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17079877982aSShri Abhyankar           col    = pj[j];
17089877982aSShri Abhyankar           pc1[j] = rtmp1[col]; rs += PetscAbsScalar(pc1[j]);
17099877982aSShri Abhyankar         }
17109877982aSShri Abhyankar 
17119877982aSShri Abhyankar         sctx.rs = rs;
17129877982aSShri Abhyankar         sctx.pv = rtmp1[i];
1713d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i);CHKERRQ(ierr);
171407b50cabSHong Zhang         if (sctx.newshift) break;
17159877982aSShri Abhyankar         pc1  = b->a + bdiag[i]; /* Mark diag[i] */
17169877982aSShri Abhyankar         *pc1 = 1.0/sctx.pv;
17179877982aSShri Abhyankar 
17189877982aSShri Abhyankar         /* Now take care of 1st column of diagonal 4x4 block. */
17199877982aSShri Abhyankar         pc2 = rtmp2 + i;
17209877982aSShri Abhyankar         pc3 = rtmp3 + i;
17219877982aSShri Abhyankar         pc4 = rtmp4 + i;
17229877982aSShri Abhyankar         if (*pc2 != 0.0 || *pc3 != 0.0 || *pc4 != 0.0) {
17239877982aSShri Abhyankar           mul2 = (*pc2)*(*pc1); *pc2 = mul2;
17249877982aSShri Abhyankar           mul3 = (*pc3)*(*pc1); *pc3 = mul3;
17259877982aSShri Abhyankar           mul4 = (*pc4)*(*pc1); *pc4 = mul4;
17269877982aSShri Abhyankar           pj   = b->j + bdiag[i+1]+1;   /* beginning of U(i,:) */
17279877982aSShri Abhyankar           nz   = bdiag[i]-bdiag[i+1]-1; /* num of entries in U(i,:) excluding diag */
17289877982aSShri Abhyankar           for (j=0; j<nz; j++) {
17299877982aSShri Abhyankar             col         = pj[j];
17309877982aSShri Abhyankar             rtmp2[col] -= mul2 * rtmp1[col];
17319877982aSShri Abhyankar             rtmp3[col] -= mul3 * rtmp1[col];
17329877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp1[col];
17339877982aSShri Abhyankar           }
173428b1a77fSLisandro Dalcin           ierr = PetscLogFlops(3+6*nz);CHKERRQ(ierr);
17359877982aSShri Abhyankar         }
17369877982aSShri Abhyankar 
17379877982aSShri Abhyankar         /* finished row i+1; check zero pivot, then stick row i+1 into b->a */
17389877982aSShri Abhyankar         rs = 0.0;
17399877982aSShri Abhyankar         /* L part */
17409877982aSShri Abhyankar         pc2 = b->a + bi[i+1];
17419877982aSShri Abhyankar         pj  = b->j + bi[i+1];
17429877982aSShri Abhyankar         nz  = bi[i+2] - bi[i+1];
17439877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17449877982aSShri Abhyankar           col    = pj[j];
17459877982aSShri Abhyankar           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
17469877982aSShri Abhyankar         }
17479877982aSShri Abhyankar         /* U part */
17489877982aSShri Abhyankar         pc2 = b->a + bdiag[i+2]+1;
17499877982aSShri Abhyankar         pj  = b->j + bdiag[i+2]+1;
17509877982aSShri Abhyankar         nz  = bdiag[i+1] - bdiag[i+2] - 1; /* exclude diagonal */
17519877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17529877982aSShri Abhyankar           col    = pj[j];
17539877982aSShri Abhyankar           pc2[j] = rtmp2[col]; rs += PetscAbsScalar(pc2[j]);
17549877982aSShri Abhyankar         }
17559877982aSShri Abhyankar 
17569877982aSShri Abhyankar         sctx.rs = rs;
17579877982aSShri Abhyankar         sctx.pv = rtmp2[i+1];
1758d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i+1);CHKERRQ(ierr);
175907b50cabSHong Zhang         if (sctx.newshift) break;
17609877982aSShri Abhyankar         pc2  = b->a + bdiag[i+1];
17619877982aSShri Abhyankar         *pc2 = 1.0/sctx.pv; /* Mark diag[i+1] */
17629877982aSShri Abhyankar 
17639877982aSShri Abhyankar         /* Now take care of 2nd column of diagonal 4x4 block. */
17649877982aSShri Abhyankar         pc3 = rtmp3 + i+1;
17659877982aSShri Abhyankar         pc4 = rtmp4 + i+1;
17669877982aSShri Abhyankar         if (*pc3 != 0.0 || *pc4 != 0.0) {
17679877982aSShri Abhyankar           mul3 = (*pc3)*(*pc2); *pc3 = mul3;
17689877982aSShri Abhyankar           mul4 = (*pc4)*(*pc2); *pc4 = mul4;
17699877982aSShri Abhyankar           pj   = b->j + bdiag[i+2]+1;     /* beginning of U(i+1,:) */
17709877982aSShri Abhyankar           nz   = bdiag[i+1]-bdiag[i+2]-1; /* num of entries in U(i+1,:) excluding diag */
17719877982aSShri Abhyankar           for (j=0; j<nz; j++) {
17729877982aSShri Abhyankar             col         = pj[j];
17739877982aSShri Abhyankar             rtmp3[col] -= mul3 * rtmp2[col];
17749877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp2[col];
17759877982aSShri Abhyankar           }
17769877982aSShri Abhyankar           ierr = PetscLogFlops(4*nz);CHKERRQ(ierr);
17779877982aSShri Abhyankar         }
17789877982aSShri Abhyankar 
17799877982aSShri Abhyankar         /* finished i+2; check zero pivot, then stick row i+2 into b->a */
17809877982aSShri Abhyankar         rs = 0.0;
17819877982aSShri Abhyankar         /* L part */
17829877982aSShri Abhyankar         pc3 = b->a + bi[i+2];
17839877982aSShri Abhyankar         pj  = b->j + bi[i+2];
17849877982aSShri Abhyankar         nz  = bi[i+3] - bi[i+2];
17859877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17869877982aSShri Abhyankar           col    = pj[j];
17879877982aSShri Abhyankar           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
17889877982aSShri Abhyankar         }
17899877982aSShri Abhyankar         /* U part */
17909877982aSShri Abhyankar         pc3 = b->a + bdiag[i+3]+1;
17919877982aSShri Abhyankar         pj  = b->j + bdiag[i+3]+1;
17929877982aSShri Abhyankar         nz  = bdiag[i+2] - bdiag[i+3] - 1; /* exclude diagonal */
17939877982aSShri Abhyankar         for (j=0; j<nz; j++) {
17949877982aSShri Abhyankar           col    = pj[j];
17959877982aSShri Abhyankar           pc3[j] = rtmp3[col]; rs += PetscAbsScalar(pc3[j]);
17969877982aSShri Abhyankar         }
17979877982aSShri Abhyankar 
17989877982aSShri Abhyankar         sctx.rs = rs;
17999877982aSShri Abhyankar         sctx.pv = rtmp3[i+2];
1800d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i+2);CHKERRQ(ierr);
180107b50cabSHong Zhang         if (sctx.newshift) break;
18029877982aSShri Abhyankar         pc3  = b->a + bdiag[i+2];
18039877982aSShri Abhyankar         *pc3 = 1.0/sctx.pv; /* Mark diag[i+2] */
18049877982aSShri Abhyankar 
18059877982aSShri Abhyankar         /* Now take care of 3rd column of diagonal 4x4 block. */
18069877982aSShri Abhyankar         pc4 = rtmp4 + i+2;
18079877982aSShri Abhyankar         if (*pc4 != 0.0) {
18089877982aSShri Abhyankar           mul4 = (*pc4)*(*pc3); *pc4 = mul4;
18099877982aSShri Abhyankar           pj   = b->j + bdiag[i+3]+1;     /* beginning of U(i+2,:) */
18109877982aSShri Abhyankar           nz   = bdiag[i+2]-bdiag[i+3]-1; /* num of entries in U(i+2,:) excluding diag */
18119877982aSShri Abhyankar           for (j=0; j<nz; j++) {
18129877982aSShri Abhyankar             col         = pj[j];
18139877982aSShri Abhyankar             rtmp4[col] -= mul4 * rtmp3[col];
18149877982aSShri Abhyankar           }
181528b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz);CHKERRQ(ierr);
18169877982aSShri Abhyankar         }
18179877982aSShri Abhyankar 
18189877982aSShri Abhyankar         /* finished i+3; check zero pivot, then stick row i+3 into b->a */
18199877982aSShri Abhyankar         rs = 0.0;
18209877982aSShri Abhyankar         /* L part */
18219877982aSShri Abhyankar         pc4 = b->a + bi[i+3];
18229877982aSShri Abhyankar         pj  = b->j + bi[i+3];
18239877982aSShri Abhyankar         nz  = bi[i+4] - bi[i+3];
18249877982aSShri Abhyankar         for (j=0; j<nz; j++) {
18259877982aSShri Abhyankar           col    = pj[j];
18269877982aSShri Abhyankar           pc4[j] = rtmp4[col]; rs += PetscAbsScalar(pc4[j]);
18279877982aSShri Abhyankar         }
18289877982aSShri Abhyankar         /* U part */
18299877982aSShri Abhyankar         pc4 = b->a + bdiag[i+4]+1;
18309877982aSShri Abhyankar         pj  = b->j + bdiag[i+4]+1;
18319877982aSShri Abhyankar         nz  = bdiag[i+3] - bdiag[i+4] - 1; /* exclude diagonal */
18329877982aSShri Abhyankar         for (j=0; j<nz; j++) {
18339877982aSShri Abhyankar           col    = pj[j];
18349877982aSShri Abhyankar           pc4[j] = rtmp4[col]; rs += PetscAbsScalar(pc4[j]);
18359877982aSShri Abhyankar         }
18369877982aSShri Abhyankar 
18379877982aSShri Abhyankar         sctx.rs = rs;
18389877982aSShri Abhyankar         sctx.pv = rtmp4[i+3];
1839d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,i+3);CHKERRQ(ierr);
184007b50cabSHong Zhang         if (sctx.newshift) break;
18419877982aSShri Abhyankar         pc4  = b->a + bdiag[i+3];
18429877982aSShri Abhyankar         *pc4 = 1.0/sctx.pv; /* Mark diag[i+3] */
18439877982aSShri Abhyankar         break;
184468785679SHong Zhang 
184528f1b45aSHong Zhang       default:
1846e32f2f54SBarry Smith         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Node size not yet supported \n");
184728f1b45aSHong Zhang       }
1848c2b86aeeSHong Zhang       if (sctx.newshift) break; /* break for (inod=0,i=0; inod<node_max; inod++) */
184928f1b45aSHong Zhang       i += nodesz;                 /* Update the row */
185068785679SHong Zhang     }
185128f1b45aSHong Zhang 
185228f1b45aSHong Zhang     /* MatPivotRefine() */
185307b50cabSHong Zhang     if (info->shifttype == (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE && !sctx.newshift && sctx.shift_fraction>0 && sctx.nshift<sctx.nshift_max) {
185428f1b45aSHong Zhang       /*
185528f1b45aSHong Zhang        * if no shift in this attempt & shifting & started shifting & can refine,
185628f1b45aSHong Zhang        * then try lower shift
185728f1b45aSHong Zhang        */
185828f1b45aSHong Zhang       sctx.shift_hi       = sctx.shift_fraction;
185928f1b45aSHong Zhang       sctx.shift_fraction = (sctx.shift_hi+sctx.shift_lo)/2.;
186028f1b45aSHong Zhang       sctx.shift_amount   = sctx.shift_fraction * sctx.shift_top;
186107b50cabSHong Zhang       sctx.newshift       = PETSC_TRUE;
186228f1b45aSHong Zhang       sctx.nshift++;
186328f1b45aSHong Zhang     }
186407b50cabSHong Zhang   } while (sctx.newshift);
186528f1b45aSHong Zhang 
1866eb9baa12SBarry Smith   ierr = PetscFree4(rtmp1,rtmp2,rtmp3,rtmp4);CHKERRQ(ierr);
186768785679SHong Zhang   ierr = PetscFree(tmp_vec2);CHKERRQ(ierr);
186828f1b45aSHong Zhang   ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr);
186928f1b45aSHong Zhang   ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr);
187028f1b45aSHong Zhang 
1871abb87a52SBarry Smith   if (b->inode.size) {
1872abb87a52SBarry Smith     C->ops->solve           = MatSolve_SeqAIJ_Inode;
1873abb87a52SBarry Smith   } else {
1874d3ac4fa3SBarry Smith     C->ops->solve           = MatSolve_SeqAIJ;
1875abb87a52SBarry Smith   }
187628f1b45aSHong Zhang   C->ops->solveadd          = MatSolveAdd_SeqAIJ;
187728f1b45aSHong Zhang   C->ops->solvetranspose    = MatSolveTranspose_SeqAIJ;
187828f1b45aSHong Zhang   C->ops->solvetransposeadd = MatSolveTransposeAdd_SeqAIJ;
187928f1b45aSHong Zhang   C->ops->matsolve          = MatMatSolve_SeqAIJ;
188028f1b45aSHong Zhang   C->assembled              = PETSC_TRUE;
188128f1b45aSHong Zhang   C->preallocated           = PETSC_TRUE;
18822205254eSKarl Rupp 
188328f1b45aSHong Zhang   ierr = PetscLogFlops(C->cmap->n);CHKERRQ(ierr);
188428f1b45aSHong Zhang 
188528f1b45aSHong Zhang   /* MatShiftView(A,info,&sctx) */
188628f1b45aSHong Zhang   if (sctx.nshift) {
1887f4db908eSBarry Smith     if (info->shifttype == (PetscReal) MAT_SHIFT_POSITIVE_DEFINITE) {
188857622a8eSBarry Smith       ierr = PetscInfo4(A,"number of shift_pd tries %D, shift_amount %g, diagonal shifted up by %e fraction top_value %e\n",sctx.nshift,(double)sctx.shift_amount,(double)sctx.shift_fraction,(double)sctx.shift_top);CHKERRQ(ierr);
1889f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_NONZERO) {
189057622a8eSBarry Smith       ierr = PetscInfo2(A,"number of shift_nz tries %D, shift_amount %g\n",sctx.nshift,(double)sctx.shift_amount);CHKERRQ(ierr);
1891f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_INBLOCKS) {
189257622a8eSBarry Smith       ierr = PetscInfo2(A,"number of shift_inblocks applied %D, each shift_amount %g\n",sctx.nshift,(double)info->shiftamount);CHKERRQ(ierr);
189328f1b45aSHong Zhang     }
189428f1b45aSHong Zhang   }
189528f1b45aSHong Zhang   PetscFunctionReturn(0);
189628f1b45aSHong Zhang }
1897628f99d7SShri Abhyankar 
1898628f99d7SShri Abhyankar #undef __FUNCT__
1899628f99d7SShri Abhyankar #define __FUNCT__ "MatLUFactorNumeric_SeqAIJ_Inode_inplace"
1900628f99d7SShri Abhyankar PetscErrorCode MatLUFactorNumeric_SeqAIJ_Inode_inplace(Mat B,Mat A,const MatFactorInfo *info)
1901628f99d7SShri Abhyankar {
1902628f99d7SShri Abhyankar   Mat             C     = B;
1903628f99d7SShri Abhyankar   Mat_SeqAIJ      *a    = (Mat_SeqAIJ*)A->data,*b = (Mat_SeqAIJ*)C->data;
1904628f99d7SShri Abhyankar   IS              iscol = b->col,isrow = b->row,isicol = b->icol;
1905628f99d7SShri Abhyankar   PetscErrorCode  ierr;
1906628f99d7SShri Abhyankar   const PetscInt  *r,*ic,*c,*ics;
1907628f99d7SShri Abhyankar   PetscInt        n   = A->rmap->n,*bi = b->i;
1908628f99d7SShri Abhyankar   PetscInt        *bj = b->j,*nbj=b->j +1,*ajtmp,*bjtmp,nz,nz_tmp,row,prow;
19098758e1faSBarry Smith   PetscInt        i,j,idx,*bd = b->diag,node_max,nodesz;
19108758e1faSBarry Smith   PetscInt        *ai = a->i,*aj = a->j;
1911628f99d7SShri Abhyankar   PetscInt        *ns,*tmp_vec1,*tmp_vec2,*nsmap,*pj;
1912628f99d7SShri Abhyankar   PetscScalar     mul1,mul2,mul3,tmp;
1913628f99d7SShri Abhyankar   MatScalar       *pc1,*pc2,*pc3,*ba = b->a,*pv,*rtmp11,*rtmp22,*rtmp33;
1914628f99d7SShri Abhyankar   const MatScalar *v1,*v2,*v3,*aa = a->a,*rtmp1;
1915628f99d7SShri Abhyankar   PetscReal       rs=0.0;
1916628f99d7SShri Abhyankar   FactorShiftCtx  sctx;
1917628f99d7SShri Abhyankar 
1918628f99d7SShri Abhyankar   PetscFunctionBegin;
1919628f99d7SShri Abhyankar   sctx.shift_top      = 0;
1920628f99d7SShri Abhyankar   sctx.nshift_max     = 0;
1921628f99d7SShri Abhyankar   sctx.shift_lo       = 0;
1922628f99d7SShri Abhyankar   sctx.shift_hi       = 0;
1923628f99d7SShri Abhyankar   sctx.shift_fraction = 0;
1924628f99d7SShri Abhyankar 
1925628f99d7SShri Abhyankar   /* if both shift schemes are chosen by user, only use info->shiftpd */
1926f4db908eSBarry Smith   if (info->shifttype==(PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) { /* set sctx.shift_top=max{rs} */
1927628f99d7SShri Abhyankar     sctx.shift_top = 0;
1928628f99d7SShri Abhyankar     for (i=0; i<n; i++) {
1929628f99d7SShri Abhyankar       /* calculate rs = sum(|aij|)-RealPart(aii), amt of shift needed for this row */
1930628f99d7SShri Abhyankar       rs    = 0.0;
1931628f99d7SShri Abhyankar       ajtmp = aj + ai[i];
1932628f99d7SShri Abhyankar       rtmp1 = aa + ai[i];
1933628f99d7SShri Abhyankar       nz    = ai[i+1] - ai[i];
1934628f99d7SShri Abhyankar       for (j=0; j<nz; j++) {
1935628f99d7SShri Abhyankar         if (*ajtmp != i) {
1936628f99d7SShri Abhyankar           rs += PetscAbsScalar(*rtmp1++);
1937628f99d7SShri Abhyankar         } else {
1938628f99d7SShri Abhyankar           rs -= PetscRealPart(*rtmp1++);
1939628f99d7SShri Abhyankar         }
1940628f99d7SShri Abhyankar         ajtmp++;
1941628f99d7SShri Abhyankar       }
1942628f99d7SShri Abhyankar       if (rs>sctx.shift_top) sctx.shift_top = rs;
1943628f99d7SShri Abhyankar     }
1944628f99d7SShri Abhyankar     if (sctx.shift_top == 0.0) sctx.shift_top += 1.e-12;
1945628f99d7SShri Abhyankar     sctx.shift_top *= 1.1;
1946628f99d7SShri Abhyankar     sctx.nshift_max = 5;
1947628f99d7SShri Abhyankar     sctx.shift_lo   = 0.;
1948628f99d7SShri Abhyankar     sctx.shift_hi   = 1.;
1949628f99d7SShri Abhyankar   }
1950628f99d7SShri Abhyankar   sctx.shift_amount = 0;
1951628f99d7SShri Abhyankar   sctx.nshift       = 0;
1952628f99d7SShri Abhyankar 
1953628f99d7SShri Abhyankar   ierr   = ISGetIndices(isrow,&r);CHKERRQ(ierr);
1954628f99d7SShri Abhyankar   ierr   = ISGetIndices(iscol,&c);CHKERRQ(ierr);
1955628f99d7SShri Abhyankar   ierr   = ISGetIndices(isicol,&ic);CHKERRQ(ierr);
19561795a4d1SJed Brown   ierr   = PetscCalloc3(n,&rtmp11,n,&rtmp22,n,&rtmp33);CHKERRQ(ierr);
1957628f99d7SShri Abhyankar   ics    = ic;
1958628f99d7SShri Abhyankar 
1959628f99d7SShri Abhyankar   node_max = a->inode.node_count;
1960628f99d7SShri Abhyankar   ns       = a->inode.size;
1961e7e72b3dSBarry Smith   if (!ns) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Matrix without inode information");
1962628f99d7SShri Abhyankar 
1963628f99d7SShri Abhyankar   /* If max inode size > 3, split it into two inodes.*/
1964628f99d7SShri Abhyankar   /* also map the inode sizes according to the ordering */
1965854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&tmp_vec1);CHKERRQ(ierr);
1966628f99d7SShri Abhyankar   for (i=0,j=0; i<node_max; ++i,++j) {
1967628f99d7SShri Abhyankar     if (ns[i]>3) {
1968628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i]/2; /* Assuming ns[i] < =5  */
1969628f99d7SShri Abhyankar       ++j;
1970628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i] - tmp_vec1[j-1];
1971628f99d7SShri Abhyankar     } else {
1972628f99d7SShri Abhyankar       tmp_vec1[j] = ns[i];
1973628f99d7SShri Abhyankar     }
1974628f99d7SShri Abhyankar   }
1975628f99d7SShri Abhyankar   /* Use the correct node_max */
1976628f99d7SShri Abhyankar   node_max = j;
1977628f99d7SShri Abhyankar 
1978628f99d7SShri Abhyankar   /* Now reorder the inode info based on mat re-ordering info */
1979628f99d7SShri Abhyankar   /* First create a row -> inode_size_array_index map */
1980854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&nsmap);CHKERRQ(ierr);
1981854ce69bSBarry Smith   ierr = PetscMalloc1(node_max+1,&tmp_vec2);CHKERRQ(ierr);
1982628f99d7SShri Abhyankar   for (i=0,row=0; i<node_max; i++) {
1983628f99d7SShri Abhyankar     nodesz = tmp_vec1[i];
1984628f99d7SShri Abhyankar     for (j=0; j<nodesz; j++,row++) {
1985628f99d7SShri Abhyankar       nsmap[row] = i;
1986628f99d7SShri Abhyankar     }
1987628f99d7SShri Abhyankar   }
1988628f99d7SShri Abhyankar   /* Using nsmap, create a reordered ns structure */
1989628f99d7SShri Abhyankar   for (i=0,j=0; i< node_max; i++) {
1990628f99d7SShri Abhyankar     nodesz      = tmp_vec1[nsmap[r[j]]];     /* here the reordered row_no is in r[] */
1991628f99d7SShri Abhyankar     tmp_vec2[i] = nodesz;
1992628f99d7SShri Abhyankar     j          += nodesz;
1993628f99d7SShri Abhyankar   }
1994628f99d7SShri Abhyankar   ierr = PetscFree(nsmap);CHKERRQ(ierr);
1995628f99d7SShri Abhyankar   ierr = PetscFree(tmp_vec1);CHKERRQ(ierr);
1996628f99d7SShri Abhyankar   /* Now use the correct ns */
1997628f99d7SShri Abhyankar   ns = tmp_vec2;
1998628f99d7SShri Abhyankar 
1999628f99d7SShri Abhyankar   do {
200007b50cabSHong Zhang     sctx.newshift = PETSC_FALSE;
2001628f99d7SShri Abhyankar     /* Now loop over each block-row, and do the factorization */
2002628f99d7SShri Abhyankar     for (i=0,row=0; i<node_max; i++) {
2003628f99d7SShri Abhyankar       nodesz = ns[i];
2004628f99d7SShri Abhyankar       nz     = bi[row+1] - bi[row];
2005628f99d7SShri Abhyankar       bjtmp  = bj + bi[row];
2006628f99d7SShri Abhyankar 
2007628f99d7SShri Abhyankar       switch (nodesz) {
2008628f99d7SShri Abhyankar       case 1:
2009628f99d7SShri Abhyankar         for  (j=0; j<nz; j++) {
2010628f99d7SShri Abhyankar           idx         = bjtmp[j];
2011628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
2012628f99d7SShri Abhyankar         }
2013628f99d7SShri Abhyankar 
2014628f99d7SShri Abhyankar         /* load in initial (unfactored row) */
2015628f99d7SShri Abhyankar         idx    = r[row];
2016628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
2017628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
2018628f99d7SShri Abhyankar         v1     = aa + ai[idx];
2019628f99d7SShri Abhyankar 
2020628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
2021628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
2022628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
2023628f99d7SShri Abhyankar         }
2024628f99d7SShri Abhyankar         rtmp11[ics[r[row]]] += sctx.shift_amount;
2025628f99d7SShri Abhyankar 
2026628f99d7SShri Abhyankar         prow = *bjtmp++;
2027628f99d7SShri Abhyankar         while (prow < row) {
2028628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
2029628f99d7SShri Abhyankar           if (*pc1 != 0.0) {
2030628f99d7SShri Abhyankar             pv     = ba + bd[prow];
2031628f99d7SShri Abhyankar             pj     = nbj + bd[prow];
2032628f99d7SShri Abhyankar             mul1   = *pc1 * *pv++;
2033628f99d7SShri Abhyankar             *pc1   = mul1;
2034628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
203528b1a77fSLisandro Dalcin             ierr   = PetscLogFlops(1+2*nz_tmp);CHKERRQ(ierr);
2036628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2037628f99d7SShri Abhyankar               tmp          = pv[j];
2038628f99d7SShri Abhyankar               idx          = pj[j];
2039628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2040628f99d7SShri Abhyankar             }
2041628f99d7SShri Abhyankar           }
2042628f99d7SShri Abhyankar           prow = *bjtmp++;
2043628f99d7SShri Abhyankar         }
2044628f99d7SShri Abhyankar         pj  = bj + bi[row];
2045628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2046628f99d7SShri Abhyankar 
2047628f99d7SShri Abhyankar         sctx.pv     = rtmp11[row];
2048628f99d7SShri Abhyankar         rtmp11[row] = 1.0/rtmp11[row]; /* invert diag */
2049628f99d7SShri Abhyankar         rs          = 0.0;
2050628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2051628f99d7SShri Abhyankar           idx    = pj[j];
2052628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx]; /* rtmp11 -> ba */
2053628f99d7SShri Abhyankar           if (idx != row) rs += PetscAbsScalar(pc1[j]);
2054628f99d7SShri Abhyankar         }
2055628f99d7SShri Abhyankar         sctx.rs = rs;
2056d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,row);CHKERRQ(ierr);
205707b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2058628f99d7SShri Abhyankar         break;
2059628f99d7SShri Abhyankar 
2060628f99d7SShri Abhyankar       case 2:
2061628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2062628f99d7SShri Abhyankar           idx         = bjtmp[j];
2063628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
2064628f99d7SShri Abhyankar           rtmp22[idx] = 0.0;
2065628f99d7SShri Abhyankar         }
2066628f99d7SShri Abhyankar 
2067628f99d7SShri Abhyankar         /* load in initial (unfactored row) */
2068628f99d7SShri Abhyankar         idx    = r[row];
2069628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
2070628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
2071628f99d7SShri Abhyankar         v1     = aa + ai[idx];
2072628f99d7SShri Abhyankar         v2     = aa + ai[idx+1];
2073628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
2074628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
2075628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
2076628f99d7SShri Abhyankar           rtmp22[idx] = v2[j];
2077628f99d7SShri Abhyankar         }
2078628f99d7SShri Abhyankar         rtmp11[ics[r[row]]]   += sctx.shift_amount;
2079628f99d7SShri Abhyankar         rtmp22[ics[r[row+1]]] += sctx.shift_amount;
2080628f99d7SShri Abhyankar 
2081628f99d7SShri Abhyankar         prow = *bjtmp++;
2082628f99d7SShri Abhyankar         while (prow < row) {
2083628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
2084628f99d7SShri Abhyankar           pc2 = rtmp22 + prow;
2085628f99d7SShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0) {
2086628f99d7SShri Abhyankar             pv   = ba + bd[prow];
2087628f99d7SShri Abhyankar             pj   = nbj + bd[prow];
2088628f99d7SShri Abhyankar             mul1 = *pc1 * *pv;
2089628f99d7SShri Abhyankar             mul2 = *pc2 * *pv;
2090628f99d7SShri Abhyankar             ++pv;
2091628f99d7SShri Abhyankar             *pc1 = mul1;
2092628f99d7SShri Abhyankar             *pc2 = mul2;
2093628f99d7SShri Abhyankar 
2094628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
2095628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2096628f99d7SShri Abhyankar               tmp          = pv[j];
2097628f99d7SShri Abhyankar               idx          = pj[j];
2098628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2099628f99d7SShri Abhyankar               rtmp22[idx] -= mul2 * tmp;
2100628f99d7SShri Abhyankar             }
210128b1a77fSLisandro Dalcin             ierr = PetscLogFlops(2+4*nz_tmp);CHKERRQ(ierr);
2102628f99d7SShri Abhyankar           }
2103628f99d7SShri Abhyankar           prow = *bjtmp++;
2104628f99d7SShri Abhyankar         }
2105628f99d7SShri Abhyankar 
2106628f99d7SShri Abhyankar         /* Now take care of diagonal 2x2 block. Note: prow = row here */
2107628f99d7SShri Abhyankar         pc1 = rtmp11 + prow;
2108628f99d7SShri Abhyankar         pc2 = rtmp22 + prow;
2109628f99d7SShri Abhyankar 
2110628f99d7SShri Abhyankar         sctx.pv = *pc1;
2111628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2112628f99d7SShri Abhyankar         rs      = 0.0;
2113628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2114628f99d7SShri Abhyankar           idx = pj[j];
2115628f99d7SShri Abhyankar           if (idx != prow) rs += PetscAbsScalar(rtmp11[idx]);
2116628f99d7SShri Abhyankar         }
2117628f99d7SShri Abhyankar         sctx.rs = rs;
2118d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,row);CHKERRQ(ierr);
211907b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2120628f99d7SShri Abhyankar 
2121628f99d7SShri Abhyankar         if (*pc2 != 0.0) {
2122628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2123628f99d7SShri Abhyankar           mul2   = (*pc2)/(*pc1); /* since diag is not yet inverted.*/
2124628f99d7SShri Abhyankar           *pc2   = mul2;
2125628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2126628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2127628f99d7SShri Abhyankar             idx          = pj[j];
2128628f99d7SShri Abhyankar             tmp          = rtmp11[idx];
2129628f99d7SShri Abhyankar             rtmp22[idx] -= mul2 * tmp;
2130628f99d7SShri Abhyankar           }
213128b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz_tmp);CHKERRQ(ierr);
2132628f99d7SShri Abhyankar         }
2133628f99d7SShri Abhyankar 
2134628f99d7SShri Abhyankar         pj  = bj + bi[row];
2135628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2136628f99d7SShri Abhyankar         pc2 = ba + bi[row+1];
2137628f99d7SShri Abhyankar 
2138628f99d7SShri Abhyankar         sctx.pv       = rtmp22[row+1];
2139628f99d7SShri Abhyankar         rs            = 0.0;
2140628f99d7SShri Abhyankar         rtmp11[row]   = 1.0/rtmp11[row];
2141628f99d7SShri Abhyankar         rtmp22[row+1] = 1.0/rtmp22[row+1];
2142628f99d7SShri Abhyankar         /* copy row entries from dense representation to sparse */
2143628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2144628f99d7SShri Abhyankar           idx    = pj[j];
2145628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx];
2146628f99d7SShri Abhyankar           pc2[j] = rtmp22[idx];
2147628f99d7SShri Abhyankar           if (idx != row+1) rs += PetscAbsScalar(pc2[j]);
2148628f99d7SShri Abhyankar         }
2149628f99d7SShri Abhyankar         sctx.rs = rs;
2150d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,row+1);CHKERRQ(ierr);
215107b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2152628f99d7SShri Abhyankar         break;
2153628f99d7SShri Abhyankar 
2154628f99d7SShri Abhyankar       case 3:
2155628f99d7SShri Abhyankar         for  (j=0; j<nz; j++) {
2156628f99d7SShri Abhyankar           idx         = bjtmp[j];
2157628f99d7SShri Abhyankar           rtmp11[idx] = 0.0;
2158628f99d7SShri Abhyankar           rtmp22[idx] = 0.0;
2159628f99d7SShri Abhyankar           rtmp33[idx] = 0.0;
2160628f99d7SShri Abhyankar         }
2161628f99d7SShri Abhyankar         /* copy the nonzeros for the 3 rows from sparse representation to dense in rtmp*[] */
2162628f99d7SShri Abhyankar         idx    = r[row];
2163628f99d7SShri Abhyankar         nz_tmp = ai[idx+1] - ai[idx];
2164628f99d7SShri Abhyankar         ajtmp  = aj + ai[idx];
2165628f99d7SShri Abhyankar         v1     = aa + ai[idx];
2166628f99d7SShri Abhyankar         v2     = aa + ai[idx+1];
2167628f99d7SShri Abhyankar         v3     = aa + ai[idx+2];
2168628f99d7SShri Abhyankar         for (j=0; j<nz_tmp; j++) {
2169628f99d7SShri Abhyankar           idx         = ics[ajtmp[j]];
2170628f99d7SShri Abhyankar           rtmp11[idx] = v1[j];
2171628f99d7SShri Abhyankar           rtmp22[idx] = v2[j];
2172628f99d7SShri Abhyankar           rtmp33[idx] = v3[j];
2173628f99d7SShri Abhyankar         }
2174628f99d7SShri Abhyankar         rtmp11[ics[r[row]]]   += sctx.shift_amount;
2175628f99d7SShri Abhyankar         rtmp22[ics[r[row+1]]] += sctx.shift_amount;
2176628f99d7SShri Abhyankar         rtmp33[ics[r[row+2]]] += sctx.shift_amount;
2177628f99d7SShri Abhyankar 
2178628f99d7SShri Abhyankar         /* loop over all pivot row blocks above this row block */
2179628f99d7SShri Abhyankar         prow = *bjtmp++;
2180628f99d7SShri Abhyankar         while (prow < row) {
2181628f99d7SShri Abhyankar           pc1 = rtmp11 + prow;
2182628f99d7SShri Abhyankar           pc2 = rtmp22 + prow;
2183628f99d7SShri Abhyankar           pc3 = rtmp33 + prow;
2184628f99d7SShri Abhyankar           if (*pc1 != 0.0 || *pc2 != 0.0 || *pc3 !=0.0) {
2185628f99d7SShri Abhyankar             pv   = ba  + bd[prow];
2186628f99d7SShri Abhyankar             pj   = nbj + bd[prow];
2187628f99d7SShri Abhyankar             mul1 = *pc1 * *pv;
2188628f99d7SShri Abhyankar             mul2 = *pc2 * *pv;
2189628f99d7SShri Abhyankar             mul3 = *pc3 * *pv;
2190628f99d7SShri Abhyankar             ++pv;
2191628f99d7SShri Abhyankar             *pc1 = mul1;
2192628f99d7SShri Abhyankar             *pc2 = mul2;
2193628f99d7SShri Abhyankar             *pc3 = mul3;
2194628f99d7SShri Abhyankar 
2195628f99d7SShri Abhyankar             nz_tmp = bi[prow+1] - bd[prow] - 1;
2196628f99d7SShri Abhyankar             /* update this row based on pivot row */
2197628f99d7SShri Abhyankar             for (j=0; j<nz_tmp; j++) {
2198628f99d7SShri Abhyankar               tmp          = pv[j];
2199628f99d7SShri Abhyankar               idx          = pj[j];
2200628f99d7SShri Abhyankar               rtmp11[idx] -= mul1 * tmp;
2201628f99d7SShri Abhyankar               rtmp22[idx] -= mul2 * tmp;
2202628f99d7SShri Abhyankar               rtmp33[idx] -= mul3 * tmp;
2203628f99d7SShri Abhyankar             }
220428b1a77fSLisandro Dalcin             ierr = PetscLogFlops(3+6*nz_tmp);CHKERRQ(ierr);
2205628f99d7SShri Abhyankar           }
2206628f99d7SShri Abhyankar           prow = *bjtmp++;
2207628f99d7SShri Abhyankar         }
2208628f99d7SShri Abhyankar 
2209628f99d7SShri Abhyankar         /* Now take care of diagonal 3x3 block in this set of rows */
2210628f99d7SShri Abhyankar         /* note: prow = row here */
2211628f99d7SShri Abhyankar         pc1 = rtmp11 + prow;
2212628f99d7SShri Abhyankar         pc2 = rtmp22 + prow;
2213628f99d7SShri Abhyankar         pc3 = rtmp33 + prow;
2214628f99d7SShri Abhyankar 
2215628f99d7SShri Abhyankar         sctx.pv = *pc1;
2216628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2217628f99d7SShri Abhyankar         rs      = 0.0;
2218628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2219628f99d7SShri Abhyankar           idx = pj[j];
2220628f99d7SShri Abhyankar           if (idx != row) rs += PetscAbsScalar(rtmp11[idx]);
2221628f99d7SShri Abhyankar         }
2222628f99d7SShri Abhyankar         sctx.rs = rs;
2223d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,row);CHKERRQ(ierr);
222407b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2225628f99d7SShri Abhyankar 
2226628f99d7SShri Abhyankar         if (*pc2 != 0.0 || *pc3 != 0.0) {
2227628f99d7SShri Abhyankar           mul2   = (*pc2)/(*pc1);
2228628f99d7SShri Abhyankar           mul3   = (*pc3)/(*pc1);
2229628f99d7SShri Abhyankar           *pc2   = mul2;
2230628f99d7SShri Abhyankar           *pc3   = mul3;
2231628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2232628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2233628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2234628f99d7SShri Abhyankar             idx          = pj[j];
2235628f99d7SShri Abhyankar             tmp          = rtmp11[idx];
2236628f99d7SShri Abhyankar             rtmp22[idx] -= mul2 * tmp;
2237628f99d7SShri Abhyankar             rtmp33[idx] -= mul3 * tmp;
2238628f99d7SShri Abhyankar           }
223928b1a77fSLisandro Dalcin           ierr = PetscLogFlops(2+4*nz_tmp);CHKERRQ(ierr);
2240628f99d7SShri Abhyankar         }
2241628f99d7SShri Abhyankar         ++prow;
2242628f99d7SShri Abhyankar 
2243628f99d7SShri Abhyankar         pc2     = rtmp22 + prow;
2244628f99d7SShri Abhyankar         pc3     = rtmp33 + prow;
2245628f99d7SShri Abhyankar         sctx.pv = *pc2;
2246628f99d7SShri Abhyankar         pj      = bj + bi[prow];
2247628f99d7SShri Abhyankar         rs      = 0.0;
2248628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2249628f99d7SShri Abhyankar           idx = pj[j];
2250628f99d7SShri Abhyankar           if (idx != prow) rs += PetscAbsScalar(rtmp22[idx]);
2251628f99d7SShri Abhyankar         }
2252628f99d7SShri Abhyankar         sctx.rs = rs;
2253d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,row+1);CHKERRQ(ierr);
225407b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2255628f99d7SShri Abhyankar 
2256628f99d7SShri Abhyankar         if (*pc3 != 0.0) {
2257628f99d7SShri Abhyankar           mul3   = (*pc3)/(*pc2);
2258628f99d7SShri Abhyankar           *pc3   = mul3;
2259628f99d7SShri Abhyankar           pj     = nbj + bd[prow];
2260628f99d7SShri Abhyankar           nz_tmp = bi[prow+1] - bd[prow] - 1;
2261628f99d7SShri Abhyankar           for (j=0; j<nz_tmp; j++) {
2262628f99d7SShri Abhyankar             idx          = pj[j];
2263628f99d7SShri Abhyankar             tmp          = rtmp22[idx];
2264628f99d7SShri Abhyankar             rtmp33[idx] -= mul3 * tmp;
2265628f99d7SShri Abhyankar           }
226628b1a77fSLisandro Dalcin           ierr = PetscLogFlops(1+2*nz_tmp);CHKERRQ(ierr);
2267628f99d7SShri Abhyankar         }
2268628f99d7SShri Abhyankar 
2269628f99d7SShri Abhyankar         pj  = bj + bi[row];
2270628f99d7SShri Abhyankar         pc1 = ba + bi[row];
2271628f99d7SShri Abhyankar         pc2 = ba + bi[row+1];
2272628f99d7SShri Abhyankar         pc3 = ba + bi[row+2];
2273628f99d7SShri Abhyankar 
2274628f99d7SShri Abhyankar         sctx.pv       = rtmp33[row+2];
2275628f99d7SShri Abhyankar         rs            = 0.0;
2276628f99d7SShri Abhyankar         rtmp11[row]   = 1.0/rtmp11[row];
2277628f99d7SShri Abhyankar         rtmp22[row+1] = 1.0/rtmp22[row+1];
2278628f99d7SShri Abhyankar         rtmp33[row+2] = 1.0/rtmp33[row+2];
2279628f99d7SShri Abhyankar         /* copy row entries from dense representation to sparse */
2280628f99d7SShri Abhyankar         for (j=0; j<nz; j++) {
2281628f99d7SShri Abhyankar           idx    = pj[j];
2282628f99d7SShri Abhyankar           pc1[j] = rtmp11[idx];
2283628f99d7SShri Abhyankar           pc2[j] = rtmp22[idx];
2284628f99d7SShri Abhyankar           pc3[j] = rtmp33[idx];
2285628f99d7SShri Abhyankar           if (idx != row+2) rs += PetscAbsScalar(pc3[j]);
2286628f99d7SShri Abhyankar         }
2287628f99d7SShri Abhyankar 
2288628f99d7SShri Abhyankar         sctx.rs = rs;
2289d0660788SBarry Smith         ierr    = MatPivotCheck(A,info,&sctx,row+2);CHKERRQ(ierr);
229007b50cabSHong Zhang         if (sctx.newshift) goto endofwhile;
2291628f99d7SShri Abhyankar         break;
2292628f99d7SShri Abhyankar 
2293628f99d7SShri Abhyankar       default:
2294e32f2f54SBarry Smith         SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Node size not yet supported \n");
2295628f99d7SShri Abhyankar       }
2296628f99d7SShri Abhyankar       row += nodesz;                 /* Update the row */
2297628f99d7SShri Abhyankar     }
2298628f99d7SShri Abhyankar endofwhile:;
229907b50cabSHong Zhang   } while (sctx.newshift);
2300eb9baa12SBarry Smith   ierr = PetscFree3(rtmp11,rtmp22,rtmp33);CHKERRQ(ierr);
2301628f99d7SShri Abhyankar   ierr = PetscFree(tmp_vec2);CHKERRQ(ierr);
2302628f99d7SShri Abhyankar   ierr = ISRestoreIndices(isicol,&ic);CHKERRQ(ierr);
2303628f99d7SShri Abhyankar   ierr = ISRestoreIndices(isrow,&r);CHKERRQ(ierr);
2304628f99d7SShri Abhyankar   ierr = ISRestoreIndices(iscol,&c);CHKERRQ(ierr);
23052205254eSKarl Rupp 
2306d3ac4fa3SBarry Smith   (B)->ops->solve = MatSolve_SeqAIJ_inplace;
2307628f99d7SShri Abhyankar   /* do not set solve add, since MatSolve_Inode + Add is faster */
2308628f99d7SShri Abhyankar   C->ops->solvetranspose    = MatSolveTranspose_SeqAIJ_inplace;
2309628f99d7SShri Abhyankar   C->ops->solvetransposeadd = MatSolveTransposeAdd_SeqAIJ_inplace;
2310628f99d7SShri Abhyankar   C->assembled              = PETSC_TRUE;
2311628f99d7SShri Abhyankar   C->preallocated           = PETSC_TRUE;
2312628f99d7SShri Abhyankar   if (sctx.nshift) {
2313f4db908eSBarry Smith     if (info->shifttype == (PetscReal)MAT_SHIFT_POSITIVE_DEFINITE) {
231457622a8eSBarry Smith       ierr = PetscInfo4(A,"number of shift_pd tries %D, shift_amount %g, diagonal shifted up by %e fraction top_value %e\n",sctx.nshift,(double)sctx.shift_amount,(double)sctx.shift_fraction,(double)sctx.shift_top);CHKERRQ(ierr);
2315f4db908eSBarry Smith     } else if (info->shifttype == (PetscReal)MAT_SHIFT_NONZERO) {
231657622a8eSBarry Smith       ierr = PetscInfo2(A,"number of shift_nz tries %D, shift_amount %g\n",sctx.nshift,(double)sctx.shift_amount);CHKERRQ(ierr);
2317628f99d7SShri Abhyankar     }
2318628f99d7SShri Abhyankar   }
2319628f99d7SShri Abhyankar   ierr = PetscLogFlops(C->cmap->n);CHKERRQ(ierr);
2320*a02bda8eSBarry Smith   ierr = MatSeqAIJCheckInode(C);CHKERRQ(ierr);
2321628f99d7SShri Abhyankar   PetscFunctionReturn(0);
2322628f99d7SShri Abhyankar }
2323628f99d7SShri Abhyankar 
2324628f99d7SShri Abhyankar 
2325019b515eSShri Abhyankar /* ----------------------------------------------------------- */
2326019b515eSShri Abhyankar #undef __FUNCT__
232735233d99SShri Abhyankar #define __FUNCT__ "MatSolve_SeqAIJ_Inode"
232835233d99SShri Abhyankar PetscErrorCode MatSolve_SeqAIJ_Inode(Mat A,Vec bb,Vec xx)
2329019b515eSShri Abhyankar {
2330019b515eSShri Abhyankar   Mat_SeqAIJ        *a    = (Mat_SeqAIJ*)A->data;
2331019b515eSShri Abhyankar   IS                iscol = a->col,isrow = a->row;
2332019b515eSShri Abhyankar   PetscErrorCode    ierr;
2333019b515eSShri Abhyankar   const PetscInt    *r,*c,*rout,*cout;
23348758e1faSBarry Smith   PetscInt          i,j,n = A->rmap->n;
23358758e1faSBarry Smith   PetscInt          node_max,row,nsz,aii,i0,i1,nz;
23368758e1faSBarry Smith   const PetscInt    *ai = a->i,*a_j = a->j,*ns,*vi,*ad,*aj;
2337019b515eSShri Abhyankar   PetscScalar       *x,*tmp,*tmps,tmp0,tmp1;
2338019b515eSShri Abhyankar   PetscScalar       sum1,sum2,sum3,sum4,sum5;
2339019b515eSShri Abhyankar   const MatScalar   *v1,*v2,*v3,*v4,*v5,*a_a = a->a,*aa;
2340019b515eSShri Abhyankar   const PetscScalar *b;
2341019b515eSShri Abhyankar 
2342019b515eSShri Abhyankar   PetscFunctionBegin;
2343e32f2f54SBarry Smith   if (!a->inode.size) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Missing Inode Structure");
2344019b515eSShri Abhyankar   node_max = a->inode.node_count;
2345019b515eSShri Abhyankar   ns       = a->inode.size;     /* Node Size array */
2346019b515eSShri Abhyankar 
23473649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
2348019b515eSShri Abhyankar   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
2349019b515eSShri Abhyankar   tmp  = a->solve_work;
2350019b515eSShri Abhyankar 
2351019b515eSShri Abhyankar   ierr = ISGetIndices(isrow,&rout);CHKERRQ(ierr); r = rout;
2352019b515eSShri Abhyankar   ierr = ISGetIndices(iscol,&cout);CHKERRQ(ierr); c = cout;
2353019b515eSShri Abhyankar 
2354019b515eSShri Abhyankar   /* forward solve the lower triangular */
2355019b515eSShri Abhyankar   tmps = tmp;
2356019b515eSShri Abhyankar   aa   = a_a;
2357019b515eSShri Abhyankar   aj   = a_j;
2358019b515eSShri Abhyankar   ad   = a->diag;
2359019b515eSShri Abhyankar 
2360019b515eSShri Abhyankar   for (i = 0,row = 0; i< node_max; ++i) {
2361019b515eSShri Abhyankar     nsz = ns[i];
2362019b515eSShri Abhyankar     aii = ai[row];
2363019b515eSShri Abhyankar     v1  = aa + aii;
2364019b515eSShri Abhyankar     vi  = aj + aii;
2365019b515eSShri Abhyankar     nz  = ai[row+1]- ai[row];
2366019b515eSShri Abhyankar 
236798991853SShri Abhyankar     if (i < node_max-1) {
236898991853SShri Abhyankar       /* Prefetch the indices for the next block */
236950d8bf02SJed Brown       PetscPrefetchBlock(aj+ai[row+nsz],ai[row+nsz+1]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA); /* indices */
237098991853SShri Abhyankar       /* Prefetch the data for the next block */
237150d8bf02SJed Brown       PetscPrefetchBlock(aa+ai[row+nsz],ai[row+nsz+ns[i+1]]-ai[row+nsz],0,PETSC_PREFETCH_HINT_NTA);
237298991853SShri Abhyankar     }
237398991853SShri Abhyankar 
2374019b515eSShri Abhyankar     switch (nsz) {               /* Each loop in 'case' is unrolled */
2375019b515eSShri Abhyankar     case 1:
2376019b515eSShri Abhyankar       sum1 = b[r[row]];
2377019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2378019b515eSShri Abhyankar         i0    = vi[j];
2379019b515eSShri Abhyankar         i1    = vi[j+1];
2380019b515eSShri Abhyankar         tmp0  = tmps[i0];
2381019b515eSShri Abhyankar         tmp1  = tmps[i1];
2382019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0 + v1[j+1]*tmp1;
2383019b515eSShri Abhyankar       }
2384019b515eSShri Abhyankar       if (j == nz-1) {
2385019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2386019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0;
2387019b515eSShri Abhyankar       }
2388019b515eSShri Abhyankar       tmp[row++]=sum1;
2389019b515eSShri Abhyankar       break;
2390019b515eSShri Abhyankar     case 2:
2391019b515eSShri Abhyankar       sum1 = b[r[row]];
2392019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2393019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2394019b515eSShri Abhyankar 
2395019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2396019b515eSShri Abhyankar         i0    = vi[j];
2397019b515eSShri Abhyankar         i1    = vi[j+1];
2398019b515eSShri Abhyankar         tmp0  = tmps[i0];
2399019b515eSShri Abhyankar         tmp1  = tmps[i1];
2400019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2401019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2402019b515eSShri Abhyankar       }
2403019b515eSShri Abhyankar       if (j == nz-1) {
2404019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2405019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2406019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2407019b515eSShri Abhyankar       }
2408019b515eSShri Abhyankar       sum2     -= v2[nz] * sum1;
2409019b515eSShri Abhyankar       tmp[row++]=sum1;
2410019b515eSShri Abhyankar       tmp[row++]=sum2;
2411019b515eSShri Abhyankar       break;
2412019b515eSShri Abhyankar     case 3:
2413019b515eSShri Abhyankar       sum1 = b[r[row]];
2414019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2415019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2416019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2417019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2418019b515eSShri Abhyankar 
2419019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2420019b515eSShri Abhyankar         i0    = vi[j];
2421019b515eSShri Abhyankar         i1    = vi[j+1];
2422019b515eSShri Abhyankar         tmp0  = tmps[i0];
2423019b515eSShri Abhyankar         tmp1  = tmps[i1];
2424019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2425019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2426019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2427019b515eSShri Abhyankar       }
2428019b515eSShri Abhyankar       if (j == nz-1) {
2429019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2430019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2431019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2432019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2433019b515eSShri Abhyankar       }
2434019b515eSShri Abhyankar       sum2     -= v2[nz] * sum1;
2435019b515eSShri Abhyankar       sum3     -= v3[nz] * sum1;
2436019b515eSShri Abhyankar       sum3     -= v3[nz+1] * sum2;
2437019b515eSShri Abhyankar       tmp[row++]=sum1;
2438019b515eSShri Abhyankar       tmp[row++]=sum2;
2439019b515eSShri Abhyankar       tmp[row++]=sum3;
2440019b515eSShri Abhyankar       break;
2441019b515eSShri Abhyankar 
2442019b515eSShri Abhyankar     case 4:
2443019b515eSShri Abhyankar       sum1 = b[r[row]];
2444019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2445019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2446019b515eSShri Abhyankar       sum4 = b[r[row+3]];
2447019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2448019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2449019b515eSShri Abhyankar       v4   = aa + ai[row+3];
2450019b515eSShri Abhyankar 
2451019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2452019b515eSShri Abhyankar         i0    = vi[j];
2453019b515eSShri Abhyankar         i1    = vi[j+1];
2454019b515eSShri Abhyankar         tmp0  = tmps[i0];
2455019b515eSShri Abhyankar         tmp1  = tmps[i1];
2456019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2457019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2458019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2459019b515eSShri Abhyankar         sum4 -= v4[j] * tmp0 + v4[j+1] * tmp1;
2460019b515eSShri Abhyankar       }
2461019b515eSShri Abhyankar       if (j == nz-1) {
2462019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2463019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2464019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2465019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2466019b515eSShri Abhyankar         sum4 -= v4[j] *tmp0;
2467019b515eSShri Abhyankar       }
2468019b515eSShri Abhyankar       sum2 -= v2[nz] * sum1;
2469019b515eSShri Abhyankar       sum3 -= v3[nz] * sum1;
2470019b515eSShri Abhyankar       sum4 -= v4[nz] * sum1;
2471019b515eSShri Abhyankar       sum3 -= v3[nz+1] * sum2;
2472019b515eSShri Abhyankar       sum4 -= v4[nz+1] * sum2;
2473019b515eSShri Abhyankar       sum4 -= v4[nz+2] * sum3;
2474019b515eSShri Abhyankar 
2475019b515eSShri Abhyankar       tmp[row++]=sum1;
2476019b515eSShri Abhyankar       tmp[row++]=sum2;
2477019b515eSShri Abhyankar       tmp[row++]=sum3;
2478019b515eSShri Abhyankar       tmp[row++]=sum4;
2479019b515eSShri Abhyankar       break;
2480019b515eSShri Abhyankar     case 5:
2481019b515eSShri Abhyankar       sum1 = b[r[row]];
2482019b515eSShri Abhyankar       sum2 = b[r[row+1]];
2483019b515eSShri Abhyankar       sum3 = b[r[row+2]];
2484019b515eSShri Abhyankar       sum4 = b[r[row+3]];
2485019b515eSShri Abhyankar       sum5 = b[r[row+4]];
2486019b515eSShri Abhyankar       v2   = aa + ai[row+1];
2487019b515eSShri Abhyankar       v3   = aa + ai[row+2];
2488019b515eSShri Abhyankar       v4   = aa + ai[row+3];
2489019b515eSShri Abhyankar       v5   = aa + ai[row+4];
2490019b515eSShri Abhyankar 
2491019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2492019b515eSShri Abhyankar         i0    = vi[j];
2493019b515eSShri Abhyankar         i1    = vi[j+1];
2494019b515eSShri Abhyankar         tmp0  = tmps[i0];
2495019b515eSShri Abhyankar         tmp1  = tmps[i1];
2496019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2497019b515eSShri Abhyankar         sum2 -= v2[j] * tmp0 + v2[j+1] * tmp1;
2498019b515eSShri Abhyankar         sum3 -= v3[j] * tmp0 + v3[j+1] * tmp1;
2499019b515eSShri Abhyankar         sum4 -= v4[j] * tmp0 + v4[j+1] * tmp1;
2500019b515eSShri Abhyankar         sum5 -= v5[j] * tmp0 + v5[j+1] * tmp1;
2501019b515eSShri Abhyankar       }
2502019b515eSShri Abhyankar       if (j == nz-1) {
2503019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2504019b515eSShri Abhyankar         sum1 -= v1[j] *tmp0;
2505019b515eSShri Abhyankar         sum2 -= v2[j] *tmp0;
2506019b515eSShri Abhyankar         sum3 -= v3[j] *tmp0;
2507019b515eSShri Abhyankar         sum4 -= v4[j] *tmp0;
2508019b515eSShri Abhyankar         sum5 -= v5[j] *tmp0;
2509019b515eSShri Abhyankar       }
2510019b515eSShri Abhyankar 
2511019b515eSShri Abhyankar       sum2 -= v2[nz] * sum1;
2512019b515eSShri Abhyankar       sum3 -= v3[nz] * sum1;
2513019b515eSShri Abhyankar       sum4 -= v4[nz] * sum1;
2514019b515eSShri Abhyankar       sum5 -= v5[nz] * sum1;
2515019b515eSShri Abhyankar       sum3 -= v3[nz+1] * sum2;
2516019b515eSShri Abhyankar       sum4 -= v4[nz+1] * sum2;
2517019b515eSShri Abhyankar       sum5 -= v5[nz+1] * sum2;
2518019b515eSShri Abhyankar       sum4 -= v4[nz+2] * sum3;
2519019b515eSShri Abhyankar       sum5 -= v5[nz+2] * sum3;
2520019b515eSShri Abhyankar       sum5 -= v5[nz+3] * sum4;
2521019b515eSShri Abhyankar 
2522019b515eSShri Abhyankar       tmp[row++]=sum1;
2523019b515eSShri Abhyankar       tmp[row++]=sum2;
2524019b515eSShri Abhyankar       tmp[row++]=sum3;
2525019b515eSShri Abhyankar       tmp[row++]=sum4;
2526019b515eSShri Abhyankar       tmp[row++]=sum5;
2527019b515eSShri Abhyankar       break;
2528019b515eSShri Abhyankar     default:
2529e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
2530019b515eSShri Abhyankar     }
2531019b515eSShri Abhyankar   }
2532019b515eSShri Abhyankar   /* backward solve the upper triangular */
2533019b515eSShri Abhyankar   for (i=node_max -1,row = n-1; i>=0; i--) {
2534019b515eSShri Abhyankar     nsz = ns[i];
2535019b515eSShri Abhyankar     aii = ad[row+1] + 1;
2536019b515eSShri Abhyankar     v1  = aa + aii;
2537019b515eSShri Abhyankar     vi  = aj + aii;
2538019b515eSShri Abhyankar     nz  = ad[row]- ad[row+1] - 1;
253998991853SShri Abhyankar 
254098991853SShri Abhyankar     if (i > 0) {
254198991853SShri Abhyankar       /* Prefetch the indices for the next block */
254250d8bf02SJed Brown       PetscPrefetchBlock(aj+ad[row-nsz+1]+1,ad[row-nsz]-ad[row-nsz+1],0,PETSC_PREFETCH_HINT_NTA);
254398991853SShri Abhyankar       /* Prefetch the data for the next block */
254450d8bf02SJed Brown       PetscPrefetchBlock(aa+ad[row-nsz+1]+1,ad[row-nsz-ns[i-1]+1]-ad[row-nsz+1],0,PETSC_PREFETCH_HINT_NTA);
254598991853SShri Abhyankar     }
254698991853SShri Abhyankar 
2547019b515eSShri Abhyankar     switch (nsz) {               /* Each loop in 'case' is unrolled */
2548019b515eSShri Abhyankar     case 1:
2549019b515eSShri Abhyankar       sum1 = tmp[row];
2550019b515eSShri Abhyankar 
2551019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2552019b515eSShri Abhyankar         i0    = vi[j];
2553019b515eSShri Abhyankar         i1    = vi[j+1];
2554019b515eSShri Abhyankar         tmp0  = tmps[i0];
2555019b515eSShri Abhyankar         tmp1  = tmps[i1];
2556019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2557019b515eSShri Abhyankar       }
2558019b515eSShri Abhyankar       if (j == nz-1) {
2559019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2560019b515eSShri Abhyankar         sum1 -= v1[j]*tmp0;
2561019b515eSShri Abhyankar       }
2562019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2563019b515eSShri Abhyankar       break;
2564019b515eSShri Abhyankar     case 2:
2565019b515eSShri Abhyankar       sum1 = tmp[row];
2566019b515eSShri Abhyankar       sum2 = tmp[row-1];
2567019b515eSShri Abhyankar       v2   = aa + ad[row] + 1;
2568019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2569019b515eSShri Abhyankar         i0    = vi[j];
2570019b515eSShri Abhyankar         i1    = vi[j+1];
2571019b515eSShri Abhyankar         tmp0  = tmps[i0];
2572019b515eSShri Abhyankar         tmp1  = tmps[i1];
2573019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2574019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2575019b515eSShri Abhyankar       }
2576019b515eSShri Abhyankar       if (j == nz-1) {
2577019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2578019b515eSShri Abhyankar         sum1 -= v1[j]* tmp0;
2579019b515eSShri Abhyankar         sum2 -= v2[j+1]* tmp0;
2580019b515eSShri Abhyankar       }
2581019b515eSShri Abhyankar 
2582019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2583019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2584019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2585019b515eSShri Abhyankar       break;
2586019b515eSShri Abhyankar     case 3:
2587019b515eSShri Abhyankar       sum1 = tmp[row];
2588019b515eSShri Abhyankar       sum2 = tmp[row -1];
2589019b515eSShri Abhyankar       sum3 = tmp[row -2];
2590019b515eSShri Abhyankar       v2   = aa + ad[row] + 1;
2591019b515eSShri Abhyankar       v3   = aa + ad[row -1] + 1;
2592019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2593019b515eSShri Abhyankar         i0    = vi[j];
2594019b515eSShri Abhyankar         i1    = vi[j+1];
2595019b515eSShri Abhyankar         tmp0  = tmps[i0];
2596019b515eSShri Abhyankar         tmp1  = tmps[i1];
2597019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2598019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2599019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2600019b515eSShri Abhyankar       }
2601019b515eSShri Abhyankar       if (j== nz-1) {
2602019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2603019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2604019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2605019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2606019b515eSShri Abhyankar       }
2607019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2608019b515eSShri Abhyankar       sum2     -= v2[0]* tmp0;
2609019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2610019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2611019b515eSShri Abhyankar       sum3     -= v3[0]* tmp0;
2612019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2613019b515eSShri Abhyankar 
2614019b515eSShri Abhyankar       break;
2615019b515eSShri Abhyankar     case 4:
2616019b515eSShri Abhyankar       sum1 = tmp[row];
2617019b515eSShri Abhyankar       sum2 = tmp[row -1];
2618019b515eSShri Abhyankar       sum3 = tmp[row -2];
2619019b515eSShri Abhyankar       sum4 = tmp[row -3];
2620019b515eSShri Abhyankar       v2   = aa + ad[row]+1;
2621019b515eSShri Abhyankar       v3   = aa + ad[row -1]+1;
2622019b515eSShri Abhyankar       v4   = aa + ad[row -2]+1;
2623019b515eSShri Abhyankar 
2624019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2625019b515eSShri Abhyankar         i0    = vi[j];
2626019b515eSShri Abhyankar         i1    = vi[j+1];
2627019b515eSShri Abhyankar         tmp0  = tmps[i0];
2628019b515eSShri Abhyankar         tmp1  = tmps[i1];
2629019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0   + v1[j+1] * tmp1;
2630019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2631019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2632019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0 + v4[j+4] * tmp1;
2633019b515eSShri Abhyankar       }
2634019b515eSShri Abhyankar       if (j== nz-1) {
2635019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2636019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2637019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2638019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2639019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0;
2640019b515eSShri Abhyankar       }
2641019b515eSShri Abhyankar 
2642019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2643019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2644019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2645019b515eSShri Abhyankar       sum4     -= v4[2] * tmp0;
2646019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2647019b515eSShri Abhyankar       sum3     -= v3[0] * tmp0;
2648019b515eSShri Abhyankar       sum4     -= v4[1] * tmp0;
2649019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2650019b515eSShri Abhyankar       sum4     -= v4[0] * tmp0;
2651019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum4*v4[nz+3]; row--;
2652019b515eSShri Abhyankar       break;
2653019b515eSShri Abhyankar     case 5:
2654019b515eSShri Abhyankar       sum1 = tmp[row];
2655019b515eSShri Abhyankar       sum2 = tmp[row -1];
2656019b515eSShri Abhyankar       sum3 = tmp[row -2];
2657019b515eSShri Abhyankar       sum4 = tmp[row -3];
2658019b515eSShri Abhyankar       sum5 = tmp[row -4];
2659019b515eSShri Abhyankar       v2   = aa + ad[row]+1;
2660019b515eSShri Abhyankar       v3   = aa + ad[row -1]+1;
2661019b515eSShri Abhyankar       v4   = aa + ad[row -2]+1;
2662019b515eSShri Abhyankar       v5   = aa + ad[row -3]+1;
2663019b515eSShri Abhyankar       for (j=0; j<nz-1; j+=2) {
2664019b515eSShri Abhyankar         i0    = vi[j];
2665019b515eSShri Abhyankar         i1    = vi[j+1];
2666019b515eSShri Abhyankar         tmp0  = tmps[i0];
2667019b515eSShri Abhyankar         tmp1  = tmps[i1];
2668019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0 + v1[j+1] * tmp1;
2669019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0 + v2[j+2] * tmp1;
2670019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0 + v3[j+3] * tmp1;
2671019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0 + v4[j+4] * tmp1;
2672019b515eSShri Abhyankar         sum5 -= v5[j+4] * tmp0 + v5[j+5] * tmp1;
2673019b515eSShri Abhyankar       }
2674019b515eSShri Abhyankar       if (j==nz-1) {
2675019b515eSShri Abhyankar         tmp0  = tmps[vi[j]];
2676019b515eSShri Abhyankar         sum1 -= v1[j] * tmp0;
2677019b515eSShri Abhyankar         sum2 -= v2[j+1] * tmp0;
2678019b515eSShri Abhyankar         sum3 -= v3[j+2] * tmp0;
2679019b515eSShri Abhyankar         sum4 -= v4[j+3] * tmp0;
2680019b515eSShri Abhyankar         sum5 -= v5[j+4] * tmp0;
2681019b515eSShri Abhyankar       }
2682019b515eSShri Abhyankar 
2683019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum1*v1[nz]; row--;
2684019b515eSShri Abhyankar       sum2     -= v2[0] * tmp0;
2685019b515eSShri Abhyankar       sum3     -= v3[1] * tmp0;
2686019b515eSShri Abhyankar       sum4     -= v4[2] * tmp0;
2687019b515eSShri Abhyankar       sum5     -= v5[3] * tmp0;
2688019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum2*v2[nz+1]; row--;
2689019b515eSShri Abhyankar       sum3     -= v3[0] * tmp0;
2690019b515eSShri Abhyankar       sum4     -= v4[1] * tmp0;
2691019b515eSShri Abhyankar       sum5     -= v5[2] * tmp0;
2692019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum3*v3[nz+2]; row--;
2693019b515eSShri Abhyankar       sum4     -= v4[0] * tmp0;
2694019b515eSShri Abhyankar       sum5     -= v5[1] * tmp0;
2695019b515eSShri Abhyankar       tmp0      = x[c[row]] = tmp[row] = sum4*v4[nz+3]; row--;
2696019b515eSShri Abhyankar       sum5     -= v5[0] * tmp0;
2697019b515eSShri Abhyankar       x[c[row]] = tmp[row] = sum5*v5[nz+4]; row--;
2698019b515eSShri Abhyankar       break;
2699019b515eSShri Abhyankar     default:
2700e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_COR,"Node size not yet supported \n");
2701019b515eSShri Abhyankar     }
2702019b515eSShri Abhyankar   }
2703019b515eSShri Abhyankar   ierr = ISRestoreIndices(isrow,&rout);CHKERRQ(ierr);
2704019b515eSShri Abhyankar   ierr = ISRestoreIndices(iscol,&cout);CHKERRQ(ierr);
27053649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
2706019b515eSShri Abhyankar   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
2707019b515eSShri Abhyankar   ierr = PetscLogFlops(2.0*a->nz - A->cmap->n);CHKERRQ(ierr);
2708019b515eSShri Abhyankar   PetscFunctionReturn(0);
2709019b515eSShri Abhyankar }
2710019b515eSShri Abhyankar 
2711019b515eSShri Abhyankar 
27124c1414c8SBarry Smith /*
27134c1414c8SBarry Smith      Makes a longer coloring[] array and calls the usual code with that
27144c1414c8SBarry Smith */
27154c1414c8SBarry Smith #undef __FUNCT__
27164108e4d5SBarry Smith #define __FUNCT__ "MatColoringPatch_SeqAIJ_Inode"
27174108e4d5SBarry Smith PetscErrorCode MatColoringPatch_SeqAIJ_Inode(Mat mat,PetscInt ncolors,PetscInt nin,ISColoringValue coloring[],ISColoring *iscoloring)
27184c1414c8SBarry Smith {
27194c1414c8SBarry Smith   Mat_SeqAIJ      *a = (Mat_SeqAIJ*)mat->data;
27204c1414c8SBarry Smith   PetscErrorCode  ierr;
2721d0f46423SBarry Smith   PetscInt        n = mat->cmap->n,m = a->inode.node_count,j,*ns = a->inode.size,row;
27224c1414c8SBarry Smith   PetscInt        *colorused,i;
27234c1414c8SBarry Smith   ISColoringValue *newcolor;
27244c1414c8SBarry Smith 
27254c1414c8SBarry Smith   PetscFunctionBegin;
2726854ce69bSBarry Smith   ierr = PetscMalloc1(n+1,&newcolor);CHKERRQ(ierr);
27274c1414c8SBarry Smith   /* loop over inodes, marking a color for each column*/
27284c1414c8SBarry Smith   row = 0;
27294c1414c8SBarry Smith   for (i=0; i<m; i++) {
27304c1414c8SBarry Smith     for (j=0; j<ns[i]; j++) {
27314c1414c8SBarry Smith       newcolor[row++] = coloring[i] + j*ncolors;
27324c1414c8SBarry Smith     }
27334c1414c8SBarry Smith   }
27344c1414c8SBarry Smith 
27354c1414c8SBarry Smith   /* eliminate unneeded colors */
27361795a4d1SJed Brown   ierr = PetscCalloc1(5*ncolors,&colorused);CHKERRQ(ierr);
27374c1414c8SBarry Smith   for (i=0; i<n; i++) {
27384c1414c8SBarry Smith     colorused[newcolor[i]] = 1;
27394c1414c8SBarry Smith   }
27404c1414c8SBarry Smith 
27414c1414c8SBarry Smith   for (i=1; i<5*ncolors; i++) {
27424c1414c8SBarry Smith     colorused[i] += colorused[i-1];
27434c1414c8SBarry Smith   }
27444c1414c8SBarry Smith   ncolors = colorused[5*ncolors-1];
27454c1414c8SBarry Smith   for (i=0; i<n; i++) {
274657815681SSatish Balay     newcolor[i] = colorused[newcolor[i]]-1;
27474c1414c8SBarry Smith   }
27484c1414c8SBarry Smith   ierr = PetscFree(colorused);CHKERRQ(ierr);
2749aaf3ff59SMatthew G. Knepley   ierr = ISColoringCreate(PetscObjectComm((PetscObject)mat),ncolors,n,newcolor,PETSC_OWN_POINTER,iscoloring);CHKERRQ(ierr);
27504c1414c8SBarry Smith   ierr = PetscFree(coloring);CHKERRQ(ierr);
27514c1414c8SBarry Smith   PetscFunctionReturn(0);
27524c1414c8SBarry Smith }
27534c1414c8SBarry Smith 
275406873bf2SBarry Smith #include <petsc-private/kernels/blockinvert.h>
27552af78befSBarry Smith 
27562af78befSBarry Smith #undef __FUNCT__
27574108e4d5SBarry Smith #define __FUNCT__ "MatSOR_SeqAIJ_Inode"
27584108e4d5SBarry Smith PetscErrorCode MatSOR_SeqAIJ_Inode(Mat A,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
27592af78befSBarry Smith {
27602af78befSBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
27617aaeff0aSMatthew G. Knepley   PetscScalar       sum1 = 0.0,sum2 = 0.0,sum3 = 0.0,sum4 = 0.0,sum5 = 0.0,tmp0,tmp1,tmp2,tmp3;
27625850ef23SBarry Smith   MatScalar         *ibdiag,*bdiag,work[25],*t;
2763a8b09249SBarry Smith   PetscScalar       *x,tmp4,tmp5,x1,x2,x3,x4,x5;
27647aaeff0aSMatthew G. Knepley   const MatScalar   *v = a->a,*v1 = NULL,*v2 = NULL,*v3 = NULL,*v4 = NULL,*v5 = NULL;
27655850ef23SBarry Smith   const PetscScalar *xb, *b;
276662bba022SBarry Smith   PetscReal         zeropivot = 1.0e-15, shift = 0.0;
27672af78befSBarry Smith   PetscErrorCode    ierr;
27688758e1faSBarry Smith   PetscInt          n,m = a->inode.node_count,cnt = 0,i,j,row,i1,i2;
27698758e1faSBarry Smith   PetscInt          sz,k,ipvt[5];
27708758e1faSBarry Smith   const PetscInt    *sizes = a->inode.size,*idx,*diag = a->diag,*ii = a->i;
27712af78befSBarry Smith 
27722af78befSBarry Smith   PetscFunctionBegin;
2773e32f2f54SBarry Smith   if (omega != 1.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for omega != 1.0; use -mat_no_inode");
2774e32f2f54SBarry Smith   if (fshift != 0.0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for fshift != 0.0; use -mat_no_inode");
27752af78befSBarry Smith 
277671f1c65dSBarry Smith   if (!a->inode.ibdiagvalid) {
27772af78befSBarry Smith     if (!a->inode.ibdiag) {
27782af78befSBarry Smith       /* calculate space needed for diagonal blocks */
27792af78befSBarry Smith       for (i=0; i<m; i++) {
27802af78befSBarry Smith         cnt += sizes[i]*sizes[i];
27812af78befSBarry Smith       }
2782f0d39aaaSBarry Smith       a->inode.bdiagsize = cnt;
27832205254eSKarl Rupp 
2784dcca6d9dSJed Brown       ierr = PetscMalloc3(cnt,&a->inode.ibdiag,cnt,&a->inode.bdiag,A->rmap->n,&a->inode.ssor_work);CHKERRQ(ierr);
278571f1c65dSBarry Smith     }
278671f1c65dSBarry Smith 
278771f1c65dSBarry Smith     /* copy over the diagonal blocks and invert them */
27882af78befSBarry Smith     ibdiag = a->inode.ibdiag;
27892af78befSBarry Smith     bdiag  = a->inode.bdiag;
27902af78befSBarry Smith     cnt    = 0;
27912af78befSBarry Smith     for (i=0, row = 0; i<m; i++) {
27922af78befSBarry Smith       for (j=0; j<sizes[i]; j++) {
2793f0d39aaaSBarry Smith         for (k=0; k<sizes[i]; k++) {
2794f0d39aaaSBarry Smith           bdiag[cnt+k*sizes[i]+j] = v[diag[row+j] - j + k];
2795f0d39aaaSBarry Smith         }
27962af78befSBarry Smith       }
2797a77337e4SBarry Smith       ierr = PetscMemcpy(ibdiag+cnt,bdiag+cnt,sizes[i]*sizes[i]*sizeof(MatScalar));CHKERRQ(ierr);
27982af78befSBarry Smith 
27992af78befSBarry Smith       switch (sizes[i]) {
28002af78befSBarry Smith       case 1:
28012af78befSBarry Smith         /* Create matrix data structure */
2802e32f2f54SBarry Smith         if (PetscAbsScalar(ibdiag[cnt]) < zeropivot) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_MAT_LU_ZRPVT,"Zero pivot on row %D",row);
280364c62002SMatthew Knepley         ibdiag[cnt] = 1.0/ibdiag[cnt];
28042af78befSBarry Smith         break;
28052af78befSBarry Smith       case 2:
280696b95a6bSBarry Smith         ierr = PetscKernel_A_gets_inverse_A_2(ibdiag+cnt,shift);CHKERRQ(ierr);
28072af78befSBarry Smith         break;
28082af78befSBarry Smith       case 3:
280996b95a6bSBarry Smith         ierr = PetscKernel_A_gets_inverse_A_3(ibdiag+cnt,shift);CHKERRQ(ierr);
28102af78befSBarry Smith         break;
28112af78befSBarry Smith       case 4:
281296b95a6bSBarry Smith         ierr = PetscKernel_A_gets_inverse_A_4(ibdiag+cnt,shift);CHKERRQ(ierr);
28132af78befSBarry Smith         break;
28142af78befSBarry Smith       case 5:
281596b95a6bSBarry Smith         ierr = PetscKernel_A_gets_inverse_A_5(ibdiag+cnt,ipvt,work,shift);CHKERRQ(ierr);
28162af78befSBarry Smith         break;
28172af78befSBarry Smith       default:
2818e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
28192af78befSBarry Smith       }
28202af78befSBarry Smith       cnt += sizes[i]*sizes[i];
28212af78befSBarry Smith       row += sizes[i];
28222af78befSBarry Smith     }
282371f1c65dSBarry Smith     a->inode.ibdiagvalid = PETSC_TRUE;
28242af78befSBarry Smith   }
28252af78befSBarry Smith   ibdiag = a->inode.ibdiag;
28262af78befSBarry Smith   bdiag  = a->inode.bdiag;
28275850ef23SBarry Smith   t      = a->inode.ssor_work;
28282af78befSBarry Smith 
28292af78befSBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
28303649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
28315850ef23SBarry Smith   /* We count flops by assuming the upper triangular and lower triangular parts have the same number of nonzeros */
28325850ef23SBarry Smith   if (flag & SOR_ZERO_INITIAL_GUESS) {
28332af78befSBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
28342af78befSBarry Smith 
28358862d2efSBarry Smith       for (i=0, row=0; i<m; i++) {
28368862d2efSBarry Smith         sz  = diag[row] - ii[row];
28378862d2efSBarry Smith         v1  = a->a + ii[row];
28388862d2efSBarry Smith         idx = a->j + ii[row];
28398862d2efSBarry Smith 
28404108e4d5SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
28418862d2efSBarry Smith         switch (sizes[i]) {
28428862d2efSBarry Smith         case 1:
28438862d2efSBarry Smith 
28448862d2efSBarry Smith           sum1 = b[row];
28458862d2efSBarry Smith           for (n = 0; n<sz-1; n+=2) {
28468862d2efSBarry Smith             i1    = idx[0];
28478862d2efSBarry Smith             i2    = idx[1];
28488862d2efSBarry Smith             idx  += 2;
28498862d2efSBarry Smith             tmp0  = x[i1];
28508862d2efSBarry Smith             tmp1  = x[i2];
28518862d2efSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
28528862d2efSBarry Smith           }
28538862d2efSBarry Smith 
28548862d2efSBarry Smith           if (n == sz-1) {
2855f0d39aaaSBarry Smith             tmp0  = x[*idx];
2856f0d39aaaSBarry Smith             sum1 -= *v1 * tmp0;
28578862d2efSBarry Smith           }
28585850ef23SBarry Smith           t[row]   = sum1;
28598862d2efSBarry Smith           x[row++] = sum1*(*ibdiag++);
28608862d2efSBarry Smith           break;
2861f0d39aaaSBarry Smith         case 2:
2862f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2863f0d39aaaSBarry Smith           sum1 = b[row];
2864f0d39aaaSBarry Smith           sum2 = b[row+1];
2865f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2866f0d39aaaSBarry Smith             i1    = idx[0];
2867f0d39aaaSBarry Smith             i2    = idx[1];
2868f0d39aaaSBarry Smith             idx  += 2;
2869f0d39aaaSBarry Smith             tmp0  = x[i1];
2870f0d39aaaSBarry Smith             tmp1  = x[i2];
2871f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2872f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2873f0d39aaaSBarry Smith           }
2874f0d39aaaSBarry Smith 
2875f0d39aaaSBarry Smith           if (n == sz-1) {
2876f0d39aaaSBarry Smith             tmp0  = x[*idx];
2877f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2878f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2879f0d39aaaSBarry Smith           }
28805850ef23SBarry Smith           t[row]   = sum1;
28815850ef23SBarry Smith           t[row+1] = sum2;
2882f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[2];
2883f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[3];
2884f0d39aaaSBarry Smith           ibdiag  += 4;
2885f0d39aaaSBarry Smith           break;
2886f0d39aaaSBarry Smith         case 3:
2887f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2888f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2889f0d39aaaSBarry Smith           sum1 = b[row];
2890f0d39aaaSBarry Smith           sum2 = b[row+1];
2891f0d39aaaSBarry Smith           sum3 = b[row+2];
2892f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2893f0d39aaaSBarry Smith             i1    = idx[0];
2894f0d39aaaSBarry Smith             i2    = idx[1];
2895f0d39aaaSBarry Smith             idx  += 2;
2896f0d39aaaSBarry Smith             tmp0  = x[i1];
2897f0d39aaaSBarry Smith             tmp1  = x[i2];
2898f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2899f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2900f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2901f0d39aaaSBarry Smith           }
2902f0d39aaaSBarry Smith 
2903f0d39aaaSBarry Smith           if (n == sz-1) {
2904f0d39aaaSBarry Smith             tmp0  = x[*idx];
2905f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2906f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2907f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2908f0d39aaaSBarry Smith           }
29095850ef23SBarry Smith           t[row]   = sum1;
29105850ef23SBarry Smith           t[row+1] = sum2;
29115850ef23SBarry Smith           t[row+2] = sum3;
2912f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
2913f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
2914f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
2915f0d39aaaSBarry Smith           ibdiag  += 9;
2916f0d39aaaSBarry Smith           break;
2917f0d39aaaSBarry Smith         case 4:
2918f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2919f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2920f0d39aaaSBarry Smith           v4   = a->a + ii[row+3];
2921f0d39aaaSBarry Smith           sum1 = b[row];
2922f0d39aaaSBarry Smith           sum2 = b[row+1];
2923f0d39aaaSBarry Smith           sum3 = b[row+2];
2924f0d39aaaSBarry Smith           sum4 = b[row+3];
2925f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2926f0d39aaaSBarry Smith             i1    = idx[0];
2927f0d39aaaSBarry Smith             i2    = idx[1];
2928f0d39aaaSBarry Smith             idx  += 2;
2929f0d39aaaSBarry Smith             tmp0  = x[i1];
2930f0d39aaaSBarry Smith             tmp1  = x[i2];
2931f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2932f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2933f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2934f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
2935f0d39aaaSBarry Smith           }
2936f0d39aaaSBarry Smith 
2937f0d39aaaSBarry Smith           if (n == sz-1) {
2938f0d39aaaSBarry Smith             tmp0  = x[*idx];
2939f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2940f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2941f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2942f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0;
2943f0d39aaaSBarry Smith           }
29445850ef23SBarry Smith           t[row]   = sum1;
29455850ef23SBarry Smith           t[row+1] = sum2;
29465850ef23SBarry Smith           t[row+2] = sum3;
29475850ef23SBarry Smith           t[row+3] = sum4;
2948f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
2949f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
2950f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
2951f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
2952f0d39aaaSBarry Smith           ibdiag  += 16;
2953f0d39aaaSBarry Smith           break;
2954f0d39aaaSBarry Smith         case 5:
2955f0d39aaaSBarry Smith           v2   = a->a + ii[row+1];
2956f0d39aaaSBarry Smith           v3   = a->a + ii[row+2];
2957f0d39aaaSBarry Smith           v4   = a->a + ii[row+3];
2958f0d39aaaSBarry Smith           v5   = a->a + ii[row+4];
2959f0d39aaaSBarry Smith           sum1 = b[row];
2960f0d39aaaSBarry Smith           sum2 = b[row+1];
2961f0d39aaaSBarry Smith           sum3 = b[row+2];
2962f0d39aaaSBarry Smith           sum4 = b[row+3];
2963f0d39aaaSBarry Smith           sum5 = b[row+4];
2964f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
2965f0d39aaaSBarry Smith             i1    = idx[0];
2966f0d39aaaSBarry Smith             i2    = idx[1];
2967f0d39aaaSBarry Smith             idx  += 2;
2968f0d39aaaSBarry Smith             tmp0  = x[i1];
2969f0d39aaaSBarry Smith             tmp1  = x[i2];
2970f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
2971f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
2972f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
2973f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
2974f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
2975f0d39aaaSBarry Smith           }
2976f0d39aaaSBarry Smith 
2977f0d39aaaSBarry Smith           if (n == sz-1) {
2978f0d39aaaSBarry Smith             tmp0  = x[*idx];
2979f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0;
2980f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0;
2981f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0;
2982f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0;
2983f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0;
2984f0d39aaaSBarry Smith           }
29855850ef23SBarry Smith           t[row]   = sum1;
29865850ef23SBarry Smith           t[row+1] = sum2;
29875850ef23SBarry Smith           t[row+2] = sum3;
29885850ef23SBarry Smith           t[row+3] = sum4;
29895850ef23SBarry Smith           t[row+4] = sum5;
2990f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
2991f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
2992f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
2993f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
2994f0d39aaaSBarry Smith           x[row++] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
2995f0d39aaaSBarry Smith           ibdiag  += 25;
2996f0d39aaaSBarry Smith           break;
29978862d2efSBarry Smith         default:
2998e32f2f54SBarry Smith           SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
29998862d2efSBarry Smith         }
30002af78befSBarry Smith       }
30012af78befSBarry Smith 
30025850ef23SBarry Smith       xb   = t;
30032af78befSBarry Smith       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
30042af78befSBarry Smith     } else xb = b;
30052af78befSBarry Smith     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
30062af78befSBarry Smith 
3007f0d39aaaSBarry Smith       ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
3008d0f46423SBarry Smith       for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
3009f0d39aaaSBarry Smith         ibdiag -= sizes[i]*sizes[i];
30108862d2efSBarry Smith         sz      = ii[row+1] - diag[row] - 1;
30118862d2efSBarry Smith         v1      = a->a + diag[row] + 1;
30128862d2efSBarry Smith         idx     = a->j + diag[row] + 1;
30132af78befSBarry Smith 
30144108e4d5SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
30158862d2efSBarry Smith         switch (sizes[i]) {
30168862d2efSBarry Smith         case 1:
30178862d2efSBarry Smith 
30188862d2efSBarry Smith           sum1 = xb[row];
30198862d2efSBarry Smith           for (n = 0; n<sz-1; n+=2) {
30208862d2efSBarry Smith             i1    = idx[0];
30218862d2efSBarry Smith             i2    = idx[1];
30228862d2efSBarry Smith             idx  += 2;
30238862d2efSBarry Smith             tmp0  = x[i1];
30248862d2efSBarry Smith             tmp1  = x[i2];
30258862d2efSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
30268862d2efSBarry Smith           }
30278862d2efSBarry Smith 
30288862d2efSBarry Smith           if (n == sz-1) {
3029f0d39aaaSBarry Smith             tmp0  = x[*idx];
3030f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
30318862d2efSBarry Smith           }
3032f0d39aaaSBarry Smith           x[row--] = sum1*(*ibdiag);
3033f0d39aaaSBarry Smith           break;
3034f0d39aaaSBarry Smith 
3035f0d39aaaSBarry Smith         case 2:
3036f0d39aaaSBarry Smith 
3037f0d39aaaSBarry Smith           sum1 = xb[row];
3038f0d39aaaSBarry Smith           sum2 = xb[row-1];
3039f0d39aaaSBarry Smith           /* note that sum1 is associated with the second of the two rows */
3040f0d39aaaSBarry Smith           v2 = a->a + diag[row-1] + 2;
3041f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3042f0d39aaaSBarry Smith             i1    = idx[0];
3043f0d39aaaSBarry Smith             i2    = idx[1];
3044f0d39aaaSBarry Smith             idx  += 2;
3045f0d39aaaSBarry Smith             tmp0  = x[i1];
3046f0d39aaaSBarry Smith             tmp1  = x[i2];
3047f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3048f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3049f0d39aaaSBarry Smith           }
3050f0d39aaaSBarry Smith 
3051f0d39aaaSBarry Smith           if (n == sz-1) {
3052f0d39aaaSBarry Smith             tmp0  = x[*idx];
3053f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3054f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3055f0d39aaaSBarry Smith           }
3056f0d39aaaSBarry Smith           x[row--] = sum2*ibdiag[1] + sum1*ibdiag[3];
3057f0d39aaaSBarry Smith           x[row--] = sum2*ibdiag[0] + sum1*ibdiag[2];
3058f0d39aaaSBarry Smith           break;
3059f0d39aaaSBarry Smith         case 3:
3060f0d39aaaSBarry Smith 
3061f0d39aaaSBarry Smith           sum1 = xb[row];
3062f0d39aaaSBarry Smith           sum2 = xb[row-1];
3063f0d39aaaSBarry Smith           sum3 = xb[row-2];
3064f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3065f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3066f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3067f0d39aaaSBarry Smith             i1    = idx[0];
3068f0d39aaaSBarry Smith             i2    = idx[1];
3069f0d39aaaSBarry Smith             idx  += 2;
3070f0d39aaaSBarry Smith             tmp0  = x[i1];
3071f0d39aaaSBarry Smith             tmp1  = x[i2];
3072f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3073f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3074f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3075f0d39aaaSBarry Smith           }
3076f0d39aaaSBarry Smith 
3077f0d39aaaSBarry Smith           if (n == sz-1) {
3078f0d39aaaSBarry Smith             tmp0  = x[*idx];
3079f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3080f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3081f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3082f0d39aaaSBarry Smith           }
3083f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3084f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3085f0d39aaaSBarry Smith           x[row--] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3086f0d39aaaSBarry Smith           break;
3087f0d39aaaSBarry Smith         case 4:
3088f0d39aaaSBarry Smith 
3089f0d39aaaSBarry Smith           sum1 = xb[row];
3090f0d39aaaSBarry Smith           sum2 = xb[row-1];
3091f0d39aaaSBarry Smith           sum3 = xb[row-2];
3092f0d39aaaSBarry Smith           sum4 = xb[row-3];
3093f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3094f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3095f0d39aaaSBarry Smith           v4   = a->a + diag[row-3] + 4;
3096f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3097f0d39aaaSBarry Smith             i1    = idx[0];
3098f0d39aaaSBarry Smith             i2    = idx[1];
3099f0d39aaaSBarry Smith             idx  += 2;
3100f0d39aaaSBarry Smith             tmp0  = x[i1];
3101f0d39aaaSBarry Smith             tmp1  = x[i2];
3102f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3103f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3104f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3105f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3106f0d39aaaSBarry Smith           }
3107f0d39aaaSBarry Smith 
3108f0d39aaaSBarry Smith           if (n == sz-1) {
3109f0d39aaaSBarry Smith             tmp0  = x[*idx];
3110f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3111f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3112f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3113f0d39aaaSBarry Smith             sum4 -= *v4*tmp0;
3114f0d39aaaSBarry Smith           }
3115f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3116f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3117f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3118f0d39aaaSBarry Smith           x[row--] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3119f0d39aaaSBarry Smith           break;
3120f0d39aaaSBarry Smith         case 5:
3121f0d39aaaSBarry Smith 
3122f0d39aaaSBarry Smith           sum1 = xb[row];
3123f0d39aaaSBarry Smith           sum2 = xb[row-1];
3124f0d39aaaSBarry Smith           sum3 = xb[row-2];
3125f0d39aaaSBarry Smith           sum4 = xb[row-3];
3126f0d39aaaSBarry Smith           sum5 = xb[row-4];
3127f0d39aaaSBarry Smith           v2   = a->a + diag[row-1] + 2;
3128f0d39aaaSBarry Smith           v3   = a->a + diag[row-2] + 3;
3129f0d39aaaSBarry Smith           v4   = a->a + diag[row-3] + 4;
3130f0d39aaaSBarry Smith           v5   = a->a + diag[row-4] + 5;
3131f0d39aaaSBarry Smith           for (n = 0; n<sz-1; n+=2) {
3132f0d39aaaSBarry Smith             i1    = idx[0];
3133f0d39aaaSBarry Smith             i2    = idx[1];
3134f0d39aaaSBarry Smith             idx  += 2;
3135f0d39aaaSBarry Smith             tmp0  = x[i1];
3136f0d39aaaSBarry Smith             tmp1  = x[i2];
3137f0d39aaaSBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3138f0d39aaaSBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3139f0d39aaaSBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3140f0d39aaaSBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3141f0d39aaaSBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
3142f0d39aaaSBarry Smith           }
3143f0d39aaaSBarry Smith 
3144f0d39aaaSBarry Smith           if (n == sz-1) {
3145f0d39aaaSBarry Smith             tmp0  = x[*idx];
3146f0d39aaaSBarry Smith             sum1 -= *v1*tmp0;
3147f0d39aaaSBarry Smith             sum2 -= *v2*tmp0;
3148f0d39aaaSBarry Smith             sum3 -= *v3*tmp0;
3149f0d39aaaSBarry Smith             sum4 -= *v4*tmp0;
3150f0d39aaaSBarry Smith             sum5 -= *v5*tmp0;
3151f0d39aaaSBarry Smith           }
3152f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3153f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3154f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3155f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3156f0d39aaaSBarry Smith           x[row--] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
31578862d2efSBarry Smith           break;
31588862d2efSBarry Smith         default:
3159e32f2f54SBarry Smith           SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
31608862d2efSBarry Smith         }
31612af78befSBarry Smith       }
31622af78befSBarry Smith 
31632af78befSBarry Smith       ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
31642af78befSBarry Smith     }
31652af78befSBarry Smith     its--;
31665850ef23SBarry Smith   }
31675850ef23SBarry Smith   while (its--) {
31685850ef23SBarry Smith 
31695850ef23SBarry Smith     if (flag & SOR_FORWARD_SWEEP || flag & SOR_LOCAL_FORWARD_SWEEP) {
3170d876e2b0SMark Adams       for (i=0, row=0, ibdiag = a->inode.ibdiag;
3171d876e2b0SMark Adams            i<m;
3172d876e2b0SMark Adams            row += sizes[i], ibdiag += sizes[i]*sizes[i], i++) {
31735850ef23SBarry Smith 
3174d876e2b0SMark Adams         sz  = diag[row] - ii[row];
31755850ef23SBarry Smith         v1  = a->a + ii[row];
31765850ef23SBarry Smith         idx = a->j + ii[row];
31775850ef23SBarry Smith         /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
31785850ef23SBarry Smith         switch (sizes[i]) {
31795850ef23SBarry Smith         case 1:
31805850ef23SBarry Smith           sum1 = b[row];
31815850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
31825850ef23SBarry Smith             i1    = idx[0];
31835850ef23SBarry Smith             i2    = idx[1];
31845850ef23SBarry Smith             idx  += 2;
31855850ef23SBarry Smith             tmp0  = x[i1];
31865850ef23SBarry Smith             tmp1  = x[i2];
31875850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
31885850ef23SBarry Smith           }
31895850ef23SBarry Smith           if (n == sz-1) {
3190d876e2b0SMark Adams             tmp0  = x[*idx++];
3191d876e2b0SMark Adams             sum1 -= *v1 * tmp0;
3192d876e2b0SMark Adams             v1++;
3193d876e2b0SMark Adams           }
3194d876e2b0SMark Adams           t[row]   = sum1;
3195d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 1;
3196d876e2b0SMark Adams           idx     = a->j + diag[row] + 1;
3197d876e2b0SMark Adams           v1 += 1;
3198d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3199d876e2b0SMark Adams             i1    = idx[0];
3200d876e2b0SMark Adams             i2    = idx[1];
3201d876e2b0SMark Adams             idx  += 2;
3202d876e2b0SMark Adams             tmp0  = x[i1];
3203d876e2b0SMark Adams             tmp1  = x[i2];
3204d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3205d876e2b0SMark Adams           }
3206d876e2b0SMark Adams           if (n == sz-1) {
3207d876e2b0SMark Adams             tmp0  = x[*idx++];
32085850ef23SBarry Smith             sum1 -= *v1 * tmp0;
32095850ef23SBarry Smith           }
32105850ef23SBarry Smith           /* in MatSOR_SeqAIJ this line would be
32115850ef23SBarry Smith            *
32125850ef23SBarry Smith            * x[row] = (1-omega)*x[row]+(sum1+(*bdiag++)*x[row])*(*ibdiag++);
32135850ef23SBarry Smith            *
32145850ef23SBarry Smith            * but omega == 1, so this becomes
32155850ef23SBarry Smith            *
3216d876e2b0SMark Adams            * x[row] = sum1*(*ibdiag++);
32175850ef23SBarry Smith            *
32185850ef23SBarry Smith            */
3219d876e2b0SMark Adams           x[row] = sum1*(*ibdiag);
32205850ef23SBarry Smith           break;
32215850ef23SBarry Smith         case 2:
32225850ef23SBarry Smith           v2   = a->a + ii[row+1];
32235850ef23SBarry Smith           sum1 = b[row];
32245850ef23SBarry Smith           sum2 = b[row+1];
32255850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
32265850ef23SBarry Smith             i1    = idx[0];
32275850ef23SBarry Smith             i2    = idx[1];
32285850ef23SBarry Smith             idx  += 2;
32295850ef23SBarry Smith             tmp0  = x[i1];
32305850ef23SBarry Smith             tmp1  = x[i2];
32315850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
32325850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
32335850ef23SBarry Smith           }
3234d876e2b0SMark Adams           if (n == sz-1) {
3235d876e2b0SMark Adams             tmp0  = x[*idx++];
3236d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3237d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3238d876e2b0SMark Adams             v1++; v2++;
3239d876e2b0SMark Adams           }
3240d876e2b0SMark Adams           t[row]   = sum1;
3241d876e2b0SMark Adams           t[row+1] = sum2;
3242d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 2;
3243d876e2b0SMark Adams           idx     = a->j + diag[row] + 2;
3244d876e2b0SMark Adams           v1 += 2;
3245d876e2b0SMark Adams           v2 += 2;
3246d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3247d876e2b0SMark Adams             i1    = idx[0];
3248d876e2b0SMark Adams             i2    = idx[1];
3249d876e2b0SMark Adams             idx  += 2;
3250d876e2b0SMark Adams             tmp0  = x[i1];
3251d876e2b0SMark Adams             tmp1  = x[i2];
3252d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3253d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3254d876e2b0SMark Adams           }
32555850ef23SBarry Smith           if (n == sz-1) {
32565850ef23SBarry Smith             tmp0  = x[*idx];
32575850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
32585850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
32595850ef23SBarry Smith           }
3260d876e2b0SMark Adams           x[row] = sum1*ibdiag[0] + sum2*ibdiag[2];
3261d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[3];
32625850ef23SBarry Smith           break;
32635850ef23SBarry Smith         case 3:
32645850ef23SBarry Smith           v2   = a->a + ii[row+1];
32655850ef23SBarry Smith           v3   = a->a + ii[row+2];
32665850ef23SBarry Smith           sum1 = b[row];
32675850ef23SBarry Smith           sum2 = b[row+1];
32685850ef23SBarry Smith           sum3 = b[row+2];
32695850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
32705850ef23SBarry Smith             i1    = idx[0];
32715850ef23SBarry Smith             i2    = idx[1];
32725850ef23SBarry Smith             idx  += 2;
32735850ef23SBarry Smith             tmp0  = x[i1];
32745850ef23SBarry Smith             tmp1  = x[i2];
32755850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
32765850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
32775850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
32785850ef23SBarry Smith           }
3279d876e2b0SMark Adams           if (n == sz-1) {
3280d876e2b0SMark Adams             tmp0  = x[*idx++];
3281d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3282d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3283d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3284d876e2b0SMark Adams             v1++; v2++; v3++;
3285d876e2b0SMark Adams           }
3286d876e2b0SMark Adams           t[row]   = sum1;
3287d876e2b0SMark Adams           t[row+1] = sum2;
3288d876e2b0SMark Adams           t[row+2] = sum3;
3289d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 3;
3290d876e2b0SMark Adams           idx     = a->j + diag[row] + 3;
3291d876e2b0SMark Adams           v1 += 3;
3292d876e2b0SMark Adams           v2 += 3;
3293d876e2b0SMark Adams           v3 += 3;
3294d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3295d876e2b0SMark Adams             i1    = idx[0];
3296d876e2b0SMark Adams             i2    = idx[1];
3297d876e2b0SMark Adams             idx  += 2;
3298d876e2b0SMark Adams             tmp0  = x[i1];
3299d876e2b0SMark Adams             tmp1  = x[i2];
3300d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3301d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3302d876e2b0SMark Adams             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3303d876e2b0SMark Adams           }
33045850ef23SBarry Smith           if (n == sz-1) {
33055850ef23SBarry Smith             tmp0  = x[*idx];
33065850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
33075850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
33085850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
33095850ef23SBarry Smith           }
3310d876e2b0SMark Adams           x[row] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
3311d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
3312d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
33135850ef23SBarry Smith           break;
33145850ef23SBarry Smith         case 4:
33155850ef23SBarry Smith           v2   = a->a + ii[row+1];
33165850ef23SBarry Smith           v3   = a->a + ii[row+2];
33175850ef23SBarry Smith           v4   = a->a + ii[row+3];
33185850ef23SBarry Smith           sum1 = b[row];
33195850ef23SBarry Smith           sum2 = b[row+1];
33205850ef23SBarry Smith           sum3 = b[row+2];
33215850ef23SBarry Smith           sum4 = b[row+3];
33225850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
33235850ef23SBarry Smith             i1    = idx[0];
33245850ef23SBarry Smith             i2    = idx[1];
33255850ef23SBarry Smith             idx  += 2;
33265850ef23SBarry Smith             tmp0  = x[i1];
33275850ef23SBarry Smith             tmp1  = x[i2];
33285850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
33295850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
33305850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
33315850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
33325850ef23SBarry Smith           }
3333d876e2b0SMark Adams           if (n == sz-1) {
3334d876e2b0SMark Adams             tmp0  = x[*idx++];
3335d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3336d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3337d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3338d876e2b0SMark Adams             sum4 -= v4[0] * tmp0;
3339d876e2b0SMark Adams             v1++; v2++; v3++; v4++;
3340d876e2b0SMark Adams           }
3341d876e2b0SMark Adams           t[row]   = sum1;
3342d876e2b0SMark Adams           t[row+1] = sum2;
3343d876e2b0SMark Adams           t[row+2] = sum3;
3344d876e2b0SMark Adams           t[row+3] = sum4;
3345d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 4;
3346d876e2b0SMark Adams           idx     = a->j + diag[row] + 4;
3347d876e2b0SMark Adams           v1 += 4;
3348d876e2b0SMark Adams           v2 += 4;
3349d876e2b0SMark Adams           v3 += 4;
3350d876e2b0SMark Adams           v4 += 4;
3351d876e2b0SMark Adams           for (n = 0; n<sz-1; n+=2) {
3352d876e2b0SMark Adams             i1    = idx[0];
3353d876e2b0SMark Adams             i2    = idx[1];
3354d876e2b0SMark Adams             idx  += 2;
3355d876e2b0SMark Adams             tmp0  = x[i1];
3356d876e2b0SMark Adams             tmp1  = x[i2];
3357d876e2b0SMark Adams             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3358d876e2b0SMark Adams             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3359d876e2b0SMark Adams             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3360d876e2b0SMark Adams             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3361d876e2b0SMark Adams           }
33625850ef23SBarry Smith           if (n == sz-1) {
33635850ef23SBarry Smith             tmp0  = x[*idx];
33645850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
33655850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
33665850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
33675850ef23SBarry Smith             sum4 -= v4[0] * tmp0;
33685850ef23SBarry Smith           }
3369d876e2b0SMark Adams           x[row] =   sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
3370d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
3371d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
3372d876e2b0SMark Adams           x[row+3] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
33735850ef23SBarry Smith           break;
33745850ef23SBarry Smith         case 5:
33755850ef23SBarry Smith           v2   = a->a + ii[row+1];
33765850ef23SBarry Smith           v3   = a->a + ii[row+2];
33775850ef23SBarry Smith           v4   = a->a + ii[row+3];
33785850ef23SBarry Smith           v5   = a->a + ii[row+4];
33795850ef23SBarry Smith           sum1 = b[row];
33805850ef23SBarry Smith           sum2 = b[row+1];
33815850ef23SBarry Smith           sum3 = b[row+2];
33825850ef23SBarry Smith           sum4 = b[row+3];
33835850ef23SBarry Smith           sum5 = b[row+4];
33845850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
33855850ef23SBarry Smith             i1    = idx[0];
33865850ef23SBarry Smith             i2    = idx[1];
33875850ef23SBarry Smith             idx  += 2;
33885850ef23SBarry Smith             tmp0  = x[i1];
33895850ef23SBarry Smith             tmp1  = x[i2];
33905850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
33915850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
33925850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
33935850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
33945850ef23SBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
33955850ef23SBarry Smith           }
33965850ef23SBarry Smith           if (n == sz-1) {
3397d876e2b0SMark Adams             tmp0  = x[*idx++];
33985850ef23SBarry Smith             sum1 -= v1[0] * tmp0;
33995850ef23SBarry Smith             sum2 -= v2[0] * tmp0;
34005850ef23SBarry Smith             sum3 -= v3[0] * tmp0;
34015850ef23SBarry Smith             sum4 -= v4[0] * tmp0;
34025850ef23SBarry Smith             sum5 -= v5[0] * tmp0;
3403d876e2b0SMark Adams             v1++; v2++; v3++; v4++; v5++;
34045850ef23SBarry Smith           }
3405d876e2b0SMark Adams           t[row]   = sum1;
3406d876e2b0SMark Adams           t[row+1] = sum2;
3407d876e2b0SMark Adams           t[row+2] = sum3;
3408d876e2b0SMark Adams           t[row+3] = sum4;
3409d876e2b0SMark Adams           t[row+4] = sum5;
3410d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 5;
3411d876e2b0SMark Adams           idx     = a->j + diag[row] + 5;
3412d876e2b0SMark Adams           v1 += 5;
3413d876e2b0SMark Adams           v2 += 5;
3414d876e2b0SMark Adams           v3 += 5;
3415d876e2b0SMark Adams           v4 += 5;
3416d876e2b0SMark Adams           v5 += 5;
34175850ef23SBarry Smith           for (n = 0; n<sz-1; n+=2) {
34185850ef23SBarry Smith             i1    = idx[0];
34195850ef23SBarry Smith             i2    = idx[1];
34205850ef23SBarry Smith             idx  += 2;
34215850ef23SBarry Smith             tmp0  = x[i1];
34225850ef23SBarry Smith             tmp1  = x[i2];
34235850ef23SBarry Smith             sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
34245850ef23SBarry Smith             sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
34255850ef23SBarry Smith             sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
34265850ef23SBarry Smith             sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
34275850ef23SBarry Smith             sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
34285850ef23SBarry Smith           }
34295850ef23SBarry Smith           if (n == sz-1) {
34305850ef23SBarry Smith             tmp0  = x[*idx];
3431d876e2b0SMark Adams             sum1 -= v1[0] * tmp0;
3432d876e2b0SMark Adams             sum2 -= v2[0] * tmp0;
3433d876e2b0SMark Adams             sum3 -= v3[0] * tmp0;
3434d876e2b0SMark Adams             sum4 -= v4[0] * tmp0;
3435d876e2b0SMark Adams             sum5 -= v5[0] * tmp0;
34365850ef23SBarry Smith           }
3437d876e2b0SMark Adams           x[row]   = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
3438d876e2b0SMark Adams           x[row+1] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
3439d876e2b0SMark Adams           x[row+2] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
3440d876e2b0SMark Adams           x[row+3] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
3441d876e2b0SMark Adams           x[row+4] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
3442d876e2b0SMark Adams           break;
3443d876e2b0SMark Adams         default:
3444d876e2b0SMark Adams           SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
3445d876e2b0SMark Adams         }
3446d876e2b0SMark Adams       }
3447d876e2b0SMark Adams       xb   = t;
3448d876e2b0SMark Adams       ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);  /* undercounts diag inverse */
3449d876e2b0SMark Adams     } else xb = b;
3450d876e2b0SMark Adams 
3451d876e2b0SMark Adams     if (flag & SOR_BACKWARD_SWEEP || flag & SOR_LOCAL_BACKWARD_SWEEP) {
3452d876e2b0SMark Adams 
3453d876e2b0SMark Adams       ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
3454d876e2b0SMark Adams       for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
3455d876e2b0SMark Adams         ibdiag -= sizes[i]*sizes[i];
3456d876e2b0SMark Adams 
3457d876e2b0SMark Adams         /* set RHS */
3458d876e2b0SMark Adams         if (xb == b) {
3459d876e2b0SMark Adams           /* whole (old way) */
3460d876e2b0SMark Adams           sz      = ii[row+1] - ii[row];
3461d876e2b0SMark Adams           idx     = a->j + ii[row];
3462d876e2b0SMark Adams           switch (sizes[i]) {
3463d876e2b0SMark Adams           case 5:
3464d876e2b0SMark Adams             v5      = a->a + ii[row-4];
3465d876e2b0SMark Adams           case 4: /* fall through */
3466d876e2b0SMark Adams             v4      = a->a + ii[row-3];
3467d876e2b0SMark Adams           case 3:
3468d876e2b0SMark Adams             v3      = a->a + ii[row-2];
3469d876e2b0SMark Adams           case 2:
3470d876e2b0SMark Adams             v2      = a->a + ii[row-1];
3471d876e2b0SMark Adams           case 1:
3472d876e2b0SMark Adams             v1      = a->a + ii[row];
3473d876e2b0SMark Adams             break;
3474d876e2b0SMark Adams           default:
3475d876e2b0SMark Adams             SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
3476d876e2b0SMark Adams           }
3477d876e2b0SMark Adams         } else {
3478d876e2b0SMark Adams           /* upper, no diag */
3479d876e2b0SMark Adams           sz      = ii[row+1] - diag[row] - 1;
3480d876e2b0SMark Adams           idx     = a->j + diag[row] + 1;
3481d876e2b0SMark Adams           switch (sizes[i]) {
3482d876e2b0SMark Adams           case 5:
3483d876e2b0SMark Adams             v5      = a->a + diag[row-4] + 5;
3484d876e2b0SMark Adams           case 4: /* fall through */
3485d876e2b0SMark Adams             v4      = a->a + diag[row-3] + 4;
3486d876e2b0SMark Adams           case 3:
3487d876e2b0SMark Adams             v3      = a->a + diag[row-2] + 3;
3488d876e2b0SMark Adams           case 2:
3489d876e2b0SMark Adams             v2      = a->a + diag[row-1] + 2;
3490d876e2b0SMark Adams           case 1:
3491d876e2b0SMark Adams             v1      = a->a + diag[row] + 1;
3492d876e2b0SMark Adams           }
3493d876e2b0SMark Adams         }
3494d876e2b0SMark Adams         /* set sum */
3495d876e2b0SMark Adams         switch (sizes[i]) {
3496d876e2b0SMark Adams         case 5:
3497d876e2b0SMark Adams           sum5 = xb[row-4];
3498d876e2b0SMark Adams         case 4: /* fall through */
3499d876e2b0SMark Adams           sum4 = xb[row-3];
3500d876e2b0SMark Adams         case 3:
3501d876e2b0SMark Adams           sum3 = xb[row-2];
3502d876e2b0SMark Adams         case 2:
3503d876e2b0SMark Adams           sum2 = xb[row-1];
3504d876e2b0SMark Adams         case 1:
3505d876e2b0SMark Adams           /* note that sum1 is associated with the last row */
3506d876e2b0SMark Adams           sum1 = xb[row];
3507d876e2b0SMark Adams         }
3508d876e2b0SMark Adams         /* do sums */
3509d876e2b0SMark Adams         for (n = 0; n<sz-1; n+=2) {
3510d876e2b0SMark Adams             i1    = idx[0];
3511d876e2b0SMark Adams             i2    = idx[1];
3512d876e2b0SMark Adams             idx  += 2;
3513d876e2b0SMark Adams             tmp0  = x[i1];
3514d876e2b0SMark Adams             tmp1  = x[i2];
3515d876e2b0SMark Adams             switch (sizes[i]) {
3516d876e2b0SMark Adams             case 5:
3517d876e2b0SMark Adams               sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
3518d876e2b0SMark Adams             case 4: /* fall through */
3519d876e2b0SMark Adams               sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
3520d876e2b0SMark Adams             case 3:
3521d876e2b0SMark Adams               sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
3522d876e2b0SMark Adams             case 2:
3523d876e2b0SMark Adams               sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
3524d876e2b0SMark Adams             case 1:
3525d876e2b0SMark Adams               sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
3526d876e2b0SMark Adams             }
3527d876e2b0SMark Adams         }
3528d876e2b0SMark Adams         /* ragged edge */
3529d876e2b0SMark Adams         if (n == sz-1) {
3530d876e2b0SMark Adams           tmp0  = x[*idx];
3531d876e2b0SMark Adams           switch (sizes[i]) {
3532d876e2b0SMark Adams           case 5:
3533d876e2b0SMark Adams             sum5 -= *v5*tmp0;
3534d876e2b0SMark Adams           case 4: /* fall through */
3535d876e2b0SMark Adams             sum4 -= *v4*tmp0;
3536d876e2b0SMark Adams           case 3:
3537d876e2b0SMark Adams             sum3 -= *v3*tmp0;
3538d876e2b0SMark Adams           case 2:
3539d876e2b0SMark Adams             sum2 -= *v2*tmp0;
3540d876e2b0SMark Adams           case 1:
3541d876e2b0SMark Adams             sum1 -= *v1*tmp0;
3542d876e2b0SMark Adams           }
3543d876e2b0SMark Adams         }
3544d876e2b0SMark Adams         /* update */
3545d876e2b0SMark Adams         if (xb == b) {
3546d876e2b0SMark Adams           /* whole (old way) w/ diag */
3547d876e2b0SMark Adams           switch (sizes[i]) {
3548d876e2b0SMark Adams           case 5:
35495850ef23SBarry Smith             x[row--] += sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
35505850ef23SBarry Smith             x[row--] += sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
35515850ef23SBarry Smith             x[row--] += sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
35525850ef23SBarry Smith             x[row--] += sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
35535850ef23SBarry Smith             x[row--] += sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
35545850ef23SBarry Smith             break;
3555d876e2b0SMark Adams           case 4:
3556d876e2b0SMark Adams             x[row--] += sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3557d876e2b0SMark Adams             x[row--] += sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3558d876e2b0SMark Adams             x[row--] += sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3559d876e2b0SMark Adams             x[row--] += sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3560d876e2b0SMark Adams             break;
3561d876e2b0SMark Adams           case 3:
3562d876e2b0SMark Adams             x[row--] += sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3563d876e2b0SMark Adams             x[row--] += sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3564d876e2b0SMark Adams             x[row--] += sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3565d876e2b0SMark Adams             break;
3566d876e2b0SMark Adams           case 2:
3567d876e2b0SMark Adams             x[row--] += sum2*ibdiag[1] + sum1*ibdiag[3];
3568d876e2b0SMark Adams             x[row--] += sum2*ibdiag[0] + sum1*ibdiag[2];
3569d876e2b0SMark Adams             break;
3570d876e2b0SMark Adams           case 1:
3571d876e2b0SMark Adams             x[row--] += sum1*(*ibdiag);
3572d876e2b0SMark Adams             break;
3573d876e2b0SMark Adams           }
3574d876e2b0SMark Adams         } else {
3575d876e2b0SMark Adams           /* no diag so set =  */
3576d876e2b0SMark Adams           switch (sizes[i]) {
3577d876e2b0SMark Adams           case 5:
3578d876e2b0SMark Adams             x[row--] = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3579d876e2b0SMark Adams             x[row--] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3580d876e2b0SMark Adams             x[row--] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3581d876e2b0SMark Adams             x[row--] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3582d876e2b0SMark Adams             x[row--] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
3583d876e2b0SMark Adams             break;
3584d876e2b0SMark Adams           case 4:
3585d876e2b0SMark Adams             x[row--] = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3586d876e2b0SMark Adams             x[row--] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3587d876e2b0SMark Adams             x[row--] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3588d876e2b0SMark Adams             x[row--] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3589d876e2b0SMark Adams             break;
3590d876e2b0SMark Adams           case 3:
3591d876e2b0SMark Adams             x[row--] = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3592d876e2b0SMark Adams             x[row--] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3593d876e2b0SMark Adams             x[row--] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3594d876e2b0SMark Adams             break;
3595d876e2b0SMark Adams           case 2:
3596d876e2b0SMark Adams             x[row--] = sum2*ibdiag[1] + sum1*ibdiag[3];
3597d876e2b0SMark Adams             x[row--] = sum2*ibdiag[0] + sum1*ibdiag[2];
3598d876e2b0SMark Adams             break;
3599d876e2b0SMark Adams           case 1:
3600d876e2b0SMark Adams             x[row--] = sum1*(*ibdiag);
3601d876e2b0SMark Adams             break;
36025850ef23SBarry Smith           }
36035850ef23SBarry Smith         }
3604d876e2b0SMark Adams       }
3605d876e2b0SMark Adams       if (xb == b) {
36065850ef23SBarry Smith         ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr);
3607d876e2b0SMark Adams       } else {
3608d876e2b0SMark Adams         ierr = PetscLogFlops(a->nz);CHKERRQ(ierr); /* assumes 1/2 in upper, undercounts diag inverse */
3609d876e2b0SMark Adams       }
36105850ef23SBarry Smith     }
36112af78befSBarry Smith   }
361289c6957cSBarry Smith   if (flag & SOR_EISENSTAT) {
361389c6957cSBarry Smith     /*
361489c6957cSBarry Smith           Apply  (U + D)^-1  where D is now the block diagonal
361589c6957cSBarry Smith     */
361689c6957cSBarry Smith     ibdiag = a->inode.ibdiag+a->inode.bdiagsize;
361789c6957cSBarry Smith     for (i=m-1, row=A->rmap->n-1; i>=0; i--) {
361889c6957cSBarry Smith       ibdiag -= sizes[i]*sizes[i];
361989c6957cSBarry Smith       sz      = ii[row+1] - diag[row] - 1;
362089c6957cSBarry Smith       v1      = a->a + diag[row] + 1;
362189c6957cSBarry Smith       idx     = a->j + diag[row] + 1;
36224108e4d5SBarry Smith       /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
362389c6957cSBarry Smith       switch (sizes[i]) {
362489c6957cSBarry Smith       case 1:
362589c6957cSBarry Smith 
362689c6957cSBarry Smith         sum1 = b[row];
362789c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
362889c6957cSBarry Smith           i1    = idx[0];
362989c6957cSBarry Smith           i2    = idx[1];
363089c6957cSBarry Smith           idx  += 2;
363189c6957cSBarry Smith           tmp0  = x[i1];
363289c6957cSBarry Smith           tmp1  = x[i2];
363389c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
363489c6957cSBarry Smith         }
363589c6957cSBarry Smith 
363689c6957cSBarry Smith         if (n == sz-1) {
363789c6957cSBarry Smith           tmp0  = x[*idx];
363889c6957cSBarry Smith           sum1 -= *v1*tmp0;
363989c6957cSBarry Smith         }
3640938d4eb3SBarry Smith         x[row] = sum1*(*ibdiag);row--;
364189c6957cSBarry Smith         break;
364289c6957cSBarry Smith 
364389c6957cSBarry Smith       case 2:
364489c6957cSBarry Smith 
364589c6957cSBarry Smith         sum1 = b[row];
364689c6957cSBarry Smith         sum2 = b[row-1];
364789c6957cSBarry Smith         /* note that sum1 is associated with the second of the two rows */
364889c6957cSBarry Smith         v2 = a->a + diag[row-1] + 2;
364989c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
365089c6957cSBarry Smith           i1    = idx[0];
365189c6957cSBarry Smith           i2    = idx[1];
365289c6957cSBarry Smith           idx  += 2;
365389c6957cSBarry Smith           tmp0  = x[i1];
365489c6957cSBarry Smith           tmp1  = x[i2];
365589c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
365689c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
365789c6957cSBarry Smith         }
365889c6957cSBarry Smith 
365989c6957cSBarry Smith         if (n == sz-1) {
366089c6957cSBarry Smith           tmp0  = x[*idx];
366189c6957cSBarry Smith           sum1 -= *v1*tmp0;
366289c6957cSBarry Smith           sum2 -= *v2*tmp0;
366389c6957cSBarry Smith         }
3664938d4eb3SBarry Smith         x[row]   = sum2*ibdiag[1] + sum1*ibdiag[3];
3665938d4eb3SBarry Smith         x[row-1] = sum2*ibdiag[0] + sum1*ibdiag[2];
3666938d4eb3SBarry Smith         row     -= 2;
366789c6957cSBarry Smith         break;
366889c6957cSBarry Smith       case 3:
366989c6957cSBarry Smith 
367089c6957cSBarry Smith         sum1 = b[row];
367189c6957cSBarry Smith         sum2 = b[row-1];
367289c6957cSBarry Smith         sum3 = b[row-2];
367389c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
367489c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
367589c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
367689c6957cSBarry Smith           i1    = idx[0];
367789c6957cSBarry Smith           i2    = idx[1];
367889c6957cSBarry Smith           idx  += 2;
367989c6957cSBarry Smith           tmp0  = x[i1];
368089c6957cSBarry Smith           tmp1  = x[i2];
368189c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
368289c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
368389c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
368489c6957cSBarry Smith         }
368589c6957cSBarry Smith 
368689c6957cSBarry Smith         if (n == sz-1) {
368789c6957cSBarry Smith           tmp0  = x[*idx];
368889c6957cSBarry Smith           sum1 -= *v1*tmp0;
368989c6957cSBarry Smith           sum2 -= *v2*tmp0;
369089c6957cSBarry Smith           sum3 -= *v3*tmp0;
369189c6957cSBarry Smith         }
3692938d4eb3SBarry Smith         x[row]   = sum3*ibdiag[2] + sum2*ibdiag[5] + sum1*ibdiag[8];
3693938d4eb3SBarry Smith         x[row-1] = sum3*ibdiag[1] + sum2*ibdiag[4] + sum1*ibdiag[7];
3694938d4eb3SBarry Smith         x[row-2] = sum3*ibdiag[0] + sum2*ibdiag[3] + sum1*ibdiag[6];
3695938d4eb3SBarry Smith         row     -= 3;
369689c6957cSBarry Smith         break;
369789c6957cSBarry Smith       case 4:
369889c6957cSBarry Smith 
369989c6957cSBarry Smith         sum1 = b[row];
370089c6957cSBarry Smith         sum2 = b[row-1];
370189c6957cSBarry Smith         sum3 = b[row-2];
370289c6957cSBarry Smith         sum4 = b[row-3];
370389c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
370489c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
370589c6957cSBarry Smith         v4   = a->a + diag[row-3] + 4;
370689c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
370789c6957cSBarry Smith           i1    = idx[0];
370889c6957cSBarry Smith           i2    = idx[1];
370989c6957cSBarry Smith           idx  += 2;
371089c6957cSBarry Smith           tmp0  = x[i1];
371189c6957cSBarry Smith           tmp1  = x[i2];
371289c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
371389c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
371489c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
371589c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
371689c6957cSBarry Smith         }
371789c6957cSBarry Smith 
371889c6957cSBarry Smith         if (n == sz-1) {
371989c6957cSBarry Smith           tmp0  = x[*idx];
372089c6957cSBarry Smith           sum1 -= *v1*tmp0;
372189c6957cSBarry Smith           sum2 -= *v2*tmp0;
372289c6957cSBarry Smith           sum3 -= *v3*tmp0;
372389c6957cSBarry Smith           sum4 -= *v4*tmp0;
372489c6957cSBarry Smith         }
3725938d4eb3SBarry Smith         x[row]   = sum4*ibdiag[3] + sum3*ibdiag[7] + sum2*ibdiag[11] + sum1*ibdiag[15];
3726938d4eb3SBarry Smith         x[row-1] = sum4*ibdiag[2] + sum3*ibdiag[6] + sum2*ibdiag[10] + sum1*ibdiag[14];
3727938d4eb3SBarry Smith         x[row-2] = sum4*ibdiag[1] + sum3*ibdiag[5] + sum2*ibdiag[9] + sum1*ibdiag[13];
3728938d4eb3SBarry Smith         x[row-3] = sum4*ibdiag[0] + sum3*ibdiag[4] + sum2*ibdiag[8] + sum1*ibdiag[12];
3729938d4eb3SBarry Smith         row     -= 4;
373089c6957cSBarry Smith         break;
373189c6957cSBarry Smith       case 5:
373289c6957cSBarry Smith 
373389c6957cSBarry Smith         sum1 = b[row];
373489c6957cSBarry Smith         sum2 = b[row-1];
373589c6957cSBarry Smith         sum3 = b[row-2];
373689c6957cSBarry Smith         sum4 = b[row-3];
373789c6957cSBarry Smith         sum5 = b[row-4];
373889c6957cSBarry Smith         v2   = a->a + diag[row-1] + 2;
373989c6957cSBarry Smith         v3   = a->a + diag[row-2] + 3;
374089c6957cSBarry Smith         v4   = a->a + diag[row-3] + 4;
374189c6957cSBarry Smith         v5   = a->a + diag[row-4] + 5;
374289c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
374389c6957cSBarry Smith           i1    = idx[0];
374489c6957cSBarry Smith           i2    = idx[1];
374589c6957cSBarry Smith           idx  += 2;
374689c6957cSBarry Smith           tmp0  = x[i1];
374789c6957cSBarry Smith           tmp1  = x[i2];
374889c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
374989c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
375089c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
375189c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
375289c6957cSBarry Smith           sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
375389c6957cSBarry Smith         }
375489c6957cSBarry Smith 
375589c6957cSBarry Smith         if (n == sz-1) {
375689c6957cSBarry Smith           tmp0  = x[*idx];
375789c6957cSBarry Smith           sum1 -= *v1*tmp0;
375889c6957cSBarry Smith           sum2 -= *v2*tmp0;
375989c6957cSBarry Smith           sum3 -= *v3*tmp0;
376089c6957cSBarry Smith           sum4 -= *v4*tmp0;
376189c6957cSBarry Smith           sum5 -= *v5*tmp0;
376289c6957cSBarry Smith         }
3763938d4eb3SBarry Smith         x[row]   = sum5*ibdiag[4] + sum4*ibdiag[9] + sum3*ibdiag[14] + sum2*ibdiag[19] + sum1*ibdiag[24];
3764938d4eb3SBarry Smith         x[row-1] = sum5*ibdiag[3] + sum4*ibdiag[8] + sum3*ibdiag[13] + sum2*ibdiag[18] + sum1*ibdiag[23];
3765938d4eb3SBarry Smith         x[row-2] = sum5*ibdiag[2] + sum4*ibdiag[7] + sum3*ibdiag[12] + sum2*ibdiag[17] + sum1*ibdiag[22];
3766938d4eb3SBarry Smith         x[row-3] = sum5*ibdiag[1] + sum4*ibdiag[6] + sum3*ibdiag[11] + sum2*ibdiag[16] + sum1*ibdiag[21];
3767938d4eb3SBarry Smith         x[row-4] = sum5*ibdiag[0] + sum4*ibdiag[5] + sum3*ibdiag[10] + sum2*ibdiag[15] + sum1*ibdiag[20];
3768938d4eb3SBarry Smith         row     -= 5;
376989c6957cSBarry Smith         break;
377089c6957cSBarry Smith       default:
3771e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
377289c6957cSBarry Smith       }
377389c6957cSBarry Smith     }
377489c6957cSBarry Smith     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
377589c6957cSBarry Smith 
377689c6957cSBarry Smith     /*
377789c6957cSBarry Smith            t = b - D x    where D is the block diagonal
377889c6957cSBarry Smith     */
377989c6957cSBarry Smith     cnt = 0;
378089c6957cSBarry Smith     for (i=0, row=0; i<m; i++) {
378189c6957cSBarry Smith       switch (sizes[i]) {
378289c6957cSBarry Smith       case 1:
378389c6957cSBarry Smith         t[row] = b[row] - bdiag[cnt++]*x[row]; row++;
378489c6957cSBarry Smith         break;
378589c6957cSBarry Smith       case 2:
378689c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1];
378789c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+2];
378889c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+3];
378989c6957cSBarry Smith         t[row]   = b[row] - tmp1;
379089c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2; row += 2;
379189c6957cSBarry Smith         cnt     += 4;
379289c6957cSBarry Smith         break;
379389c6957cSBarry Smith       case 3:
379489c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2];
379589c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+3] + x3*bdiag[cnt+6];
379689c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+4] + x3*bdiag[cnt+7];
379789c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+5] + x3*bdiag[cnt+8];
379889c6957cSBarry Smith         t[row]   = b[row] - tmp1;
379989c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
380089c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3; row += 3;
380189c6957cSBarry Smith         cnt     += 9;
380289c6957cSBarry Smith         break;
380389c6957cSBarry Smith       case 4:
380489c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2]; x4 = x[row+3];
380589c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+4] + x3*bdiag[cnt+8] + x4*bdiag[cnt+12];
380689c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+5] + x3*bdiag[cnt+9] + x4*bdiag[cnt+13];
380789c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+6] + x3*bdiag[cnt+10] + x4*bdiag[cnt+14];
380889c6957cSBarry Smith         tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+7] + x3*bdiag[cnt+11] + x4*bdiag[cnt+15];
380989c6957cSBarry Smith         t[row]   = b[row] - tmp1;
381089c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
381189c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3;
381289c6957cSBarry Smith         t[row+3] = b[row+3] - tmp4; row += 4;
381389c6957cSBarry Smith         cnt     += 16;
381489c6957cSBarry Smith         break;
381589c6957cSBarry Smith       case 5:
381689c6957cSBarry Smith         x1       = x[row]; x2 = x[row+1]; x3 = x[row+2]; x4 = x[row+3]; x5 = x[row+4];
381789c6957cSBarry Smith         tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+5] + x3*bdiag[cnt+10] + x4*bdiag[cnt+15] + x5*bdiag[cnt+20];
381889c6957cSBarry Smith         tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+6] + x3*bdiag[cnt+11] + x4*bdiag[cnt+16] + x5*bdiag[cnt+21];
381989c6957cSBarry Smith         tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+7] + x3*bdiag[cnt+12] + x4*bdiag[cnt+17] + x5*bdiag[cnt+22];
382089c6957cSBarry Smith         tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+8] + x3*bdiag[cnt+13] + x4*bdiag[cnt+18] + x5*bdiag[cnt+23];
382189c6957cSBarry Smith         tmp5     = x1*bdiag[cnt+4] + x2*bdiag[cnt+9] + x3*bdiag[cnt+14] + x4*bdiag[cnt+19] + x5*bdiag[cnt+24];
382289c6957cSBarry Smith         t[row]   = b[row] - tmp1;
382389c6957cSBarry Smith         t[row+1] = b[row+1] - tmp2;
382489c6957cSBarry Smith         t[row+2] = b[row+2] - tmp3;
382589c6957cSBarry Smith         t[row+3] = b[row+3] - tmp4;
382689c6957cSBarry Smith         t[row+4] = b[row+4] - tmp5;row += 5;
382789c6957cSBarry Smith         cnt     += 25;
382889c6957cSBarry Smith         break;
382989c6957cSBarry Smith       default:
3830e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
383189c6957cSBarry Smith       }
383289c6957cSBarry Smith     }
383389c6957cSBarry Smith     ierr = PetscLogFlops(m);CHKERRQ(ierr);
383489c6957cSBarry Smith 
383589c6957cSBarry Smith 
383689c6957cSBarry Smith 
383789c6957cSBarry Smith     /*
383889c6957cSBarry Smith           Apply (L + D)^-1 where D is the block diagonal
383989c6957cSBarry Smith     */
384089c6957cSBarry Smith     for (i=0, row=0; i<m; i++) {
384189c6957cSBarry Smith       sz  = diag[row] - ii[row];
384289c6957cSBarry Smith       v1  = a->a + ii[row];
384389c6957cSBarry Smith       idx = a->j + ii[row];
38444108e4d5SBarry Smith       /* see comments for MatMult_SeqAIJ_Inode() for how this is coded */
384589c6957cSBarry Smith       switch (sizes[i]) {
384689c6957cSBarry Smith       case 1:
384789c6957cSBarry Smith 
384889c6957cSBarry Smith         sum1 = t[row];
384989c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
385089c6957cSBarry Smith           i1    = idx[0];
385189c6957cSBarry Smith           i2    = idx[1];
385289c6957cSBarry Smith           idx  += 2;
385389c6957cSBarry Smith           tmp0  = t[i1];
385489c6957cSBarry Smith           tmp1  = t[i2];
385589c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
385689c6957cSBarry Smith         }
385789c6957cSBarry Smith 
385889c6957cSBarry Smith         if (n == sz-1) {
385989c6957cSBarry Smith           tmp0  = t[*idx];
386089c6957cSBarry Smith           sum1 -= *v1 * tmp0;
386189c6957cSBarry Smith         }
386289c6957cSBarry Smith         x[row] += t[row] = sum1*(*ibdiag++); row++;
386389c6957cSBarry Smith         break;
386489c6957cSBarry Smith       case 2:
386589c6957cSBarry Smith         v2   = a->a + ii[row+1];
386689c6957cSBarry Smith         sum1 = t[row];
386789c6957cSBarry Smith         sum2 = t[row+1];
386889c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
386989c6957cSBarry Smith           i1    = idx[0];
387089c6957cSBarry Smith           i2    = idx[1];
387189c6957cSBarry Smith           idx  += 2;
387289c6957cSBarry Smith           tmp0  = t[i1];
387389c6957cSBarry Smith           tmp1  = t[i2];
387489c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
387589c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
387689c6957cSBarry Smith         }
387789c6957cSBarry Smith 
387889c6957cSBarry Smith         if (n == sz-1) {
387989c6957cSBarry Smith           tmp0  = t[*idx];
388089c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
388189c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
388289c6957cSBarry Smith         }
388389c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[2];
388489c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[3];
388589c6957cSBarry Smith         ibdiag   += 4; row += 2;
388689c6957cSBarry Smith         break;
388789c6957cSBarry Smith       case 3:
388889c6957cSBarry Smith         v2   = a->a + ii[row+1];
388989c6957cSBarry Smith         v3   = a->a + ii[row+2];
389089c6957cSBarry Smith         sum1 = t[row];
389189c6957cSBarry Smith         sum2 = t[row+1];
389289c6957cSBarry Smith         sum3 = t[row+2];
389389c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
389489c6957cSBarry Smith           i1    = idx[0];
389589c6957cSBarry Smith           i2    = idx[1];
389689c6957cSBarry Smith           idx  += 2;
389789c6957cSBarry Smith           tmp0  = t[i1];
389889c6957cSBarry Smith           tmp1  = t[i2];
389989c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
390089c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
390189c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
390289c6957cSBarry Smith         }
390389c6957cSBarry Smith 
390489c6957cSBarry Smith         if (n == sz-1) {
390589c6957cSBarry Smith           tmp0  = t[*idx];
390689c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
390789c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
390889c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
390989c6957cSBarry Smith         }
391089c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[3] + sum3*ibdiag[6];
391189c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[4] + sum3*ibdiag[7];
391289c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[5] + sum3*ibdiag[8];
391389c6957cSBarry Smith         ibdiag   += 9; row += 3;
391489c6957cSBarry Smith         break;
391589c6957cSBarry Smith       case 4:
391689c6957cSBarry Smith         v2   = a->a + ii[row+1];
391789c6957cSBarry Smith         v3   = a->a + ii[row+2];
391889c6957cSBarry Smith         v4   = a->a + ii[row+3];
391989c6957cSBarry Smith         sum1 = t[row];
392089c6957cSBarry Smith         sum2 = t[row+1];
392189c6957cSBarry Smith         sum3 = t[row+2];
392289c6957cSBarry Smith         sum4 = t[row+3];
392389c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
392489c6957cSBarry Smith           i1    = idx[0];
392589c6957cSBarry Smith           i2    = idx[1];
392689c6957cSBarry Smith           idx  += 2;
392789c6957cSBarry Smith           tmp0  = t[i1];
392889c6957cSBarry Smith           tmp1  = t[i2];
392989c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
393089c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
393189c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
393289c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
393389c6957cSBarry Smith         }
393489c6957cSBarry Smith 
393589c6957cSBarry Smith         if (n == sz-1) {
393689c6957cSBarry Smith           tmp0  = t[*idx];
393789c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
393889c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
393989c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
394089c6957cSBarry Smith           sum4 -= v4[0] * tmp0;
394189c6957cSBarry Smith         }
394289c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[4] + sum3*ibdiag[8] + sum4*ibdiag[12];
394389c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[5] + sum3*ibdiag[9] + sum4*ibdiag[13];
394489c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[6] + sum3*ibdiag[10] + sum4*ibdiag[14];
394589c6957cSBarry Smith         x[row+3] += t[row+3] = sum1*ibdiag[3] + sum2*ibdiag[7] + sum3*ibdiag[11] + sum4*ibdiag[15];
394689c6957cSBarry Smith         ibdiag   += 16; row += 4;
394789c6957cSBarry Smith         break;
394889c6957cSBarry Smith       case 5:
394989c6957cSBarry Smith         v2   = a->a + ii[row+1];
395089c6957cSBarry Smith         v3   = a->a + ii[row+2];
395189c6957cSBarry Smith         v4   = a->a + ii[row+3];
395289c6957cSBarry Smith         v5   = a->a + ii[row+4];
395389c6957cSBarry Smith         sum1 = t[row];
395489c6957cSBarry Smith         sum2 = t[row+1];
395589c6957cSBarry Smith         sum3 = t[row+2];
395689c6957cSBarry Smith         sum4 = t[row+3];
395789c6957cSBarry Smith         sum5 = t[row+4];
395889c6957cSBarry Smith         for (n = 0; n<sz-1; n+=2) {
395989c6957cSBarry Smith           i1    = idx[0];
396089c6957cSBarry Smith           i2    = idx[1];
396189c6957cSBarry Smith           idx  += 2;
396289c6957cSBarry Smith           tmp0  = t[i1];
396389c6957cSBarry Smith           tmp1  = t[i2];
396489c6957cSBarry Smith           sum1 -= v1[0] * tmp0 + v1[1] * tmp1; v1 += 2;
396589c6957cSBarry Smith           sum2 -= v2[0] * tmp0 + v2[1] * tmp1; v2 += 2;
396689c6957cSBarry Smith           sum3 -= v3[0] * tmp0 + v3[1] * tmp1; v3 += 2;
396789c6957cSBarry Smith           sum4 -= v4[0] * tmp0 + v4[1] * tmp1; v4 += 2;
396889c6957cSBarry Smith           sum5 -= v5[0] * tmp0 + v5[1] * tmp1; v5 += 2;
396989c6957cSBarry Smith         }
397089c6957cSBarry Smith 
397189c6957cSBarry Smith         if (n == sz-1) {
397289c6957cSBarry Smith           tmp0  = t[*idx];
397389c6957cSBarry Smith           sum1 -= v1[0] * tmp0;
397489c6957cSBarry Smith           sum2 -= v2[0] * tmp0;
397589c6957cSBarry Smith           sum3 -= v3[0] * tmp0;
397689c6957cSBarry Smith           sum4 -= v4[0] * tmp0;
397789c6957cSBarry Smith           sum5 -= v5[0] * tmp0;
397889c6957cSBarry Smith         }
397989c6957cSBarry Smith         x[row]   += t[row] = sum1*ibdiag[0] + sum2*ibdiag[5] + sum3*ibdiag[10] + sum4*ibdiag[15] + sum5*ibdiag[20];
398089c6957cSBarry Smith         x[row+1] += t[row+1] = sum1*ibdiag[1] + sum2*ibdiag[6] + sum3*ibdiag[11] + sum4*ibdiag[16] + sum5*ibdiag[21];
398189c6957cSBarry Smith         x[row+2] += t[row+2] = sum1*ibdiag[2] + sum2*ibdiag[7] + sum3*ibdiag[12] + sum4*ibdiag[17] + sum5*ibdiag[22];
398289c6957cSBarry Smith         x[row+3] += t[row+3] = sum1*ibdiag[3] + sum2*ibdiag[8] + sum3*ibdiag[13] + sum4*ibdiag[18] + sum5*ibdiag[23];
398389c6957cSBarry Smith         x[row+4] += t[row+4] = sum1*ibdiag[4] + sum2*ibdiag[9] + sum3*ibdiag[14] + sum4*ibdiag[19] + sum5*ibdiag[24];
398489c6957cSBarry Smith         ibdiag   += 25; row += 5;
398589c6957cSBarry Smith         break;
398689c6957cSBarry Smith       default:
3987e32f2f54SBarry Smith         SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
398889c6957cSBarry Smith       }
398989c6957cSBarry Smith     }
399089c6957cSBarry Smith     ierr = PetscLogFlops(a->nz);CHKERRQ(ierr);
39915850ef23SBarry Smith   }
39922af78befSBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
39933649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
3994365a8a9eSBarry Smith   PetscFunctionReturn(0);
39952af78befSBarry Smith }
39962af78befSBarry Smith 
399789c6957cSBarry Smith #undef __FUNCT__
39984108e4d5SBarry Smith #define __FUNCT__ "MatMultDiagonalBlock_SeqAIJ_Inode"
39994108e4d5SBarry Smith PetscErrorCode MatMultDiagonalBlock_SeqAIJ_Inode(Mat A,Vec bb,Vec xx)
400089c6957cSBarry Smith {
400189c6957cSBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ*)A->data;
400289c6957cSBarry Smith   PetscScalar       *x,tmp1,tmp2,tmp3,tmp4,tmp5,x1,x2,x3,x4,x5;
400389c6957cSBarry Smith   const MatScalar   *bdiag = a->inode.bdiag;
400489c6957cSBarry Smith   const PetscScalar *b;
400589c6957cSBarry Smith   PetscErrorCode    ierr;
400689c6957cSBarry Smith   PetscInt          m      = a->inode.node_count,cnt = 0,i,row;
400789c6957cSBarry Smith   const PetscInt    *sizes = a->inode.size;
40082af78befSBarry Smith 
400989c6957cSBarry Smith   PetscFunctionBegin;
401089c6957cSBarry Smith   ierr = VecGetArray(xx,&x);CHKERRQ(ierr);
40113649974fSBarry Smith   ierr = VecGetArrayRead(bb,&b);CHKERRQ(ierr);
401289c6957cSBarry Smith   cnt  = 0;
401389c6957cSBarry Smith   for (i=0, row=0; i<m; i++) {
401489c6957cSBarry Smith     switch (sizes[i]) {
401589c6957cSBarry Smith     case 1:
401689c6957cSBarry Smith       x[row] = b[row]*bdiag[cnt++];row++;
401789c6957cSBarry Smith       break;
401889c6957cSBarry Smith     case 2:
401989c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1];
402089c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+2];
402189c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+3];
402289c6957cSBarry Smith       x[row++] = tmp1;
402389c6957cSBarry Smith       x[row++] = tmp2;
402489c6957cSBarry Smith       cnt     += 4;
402589c6957cSBarry Smith       break;
402689c6957cSBarry Smith     case 3:
402789c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2];
402889c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+3] + x3*bdiag[cnt+6];
402989c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+4] + x3*bdiag[cnt+7];
403089c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+5] + x3*bdiag[cnt+8];
403189c6957cSBarry Smith       x[row++] = tmp1;
403289c6957cSBarry Smith       x[row++] = tmp2;
403389c6957cSBarry Smith       x[row++] = tmp3;
403489c6957cSBarry Smith       cnt     += 9;
403589c6957cSBarry Smith       break;
403689c6957cSBarry Smith     case 4:
403789c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2]; x4 = b[row+3];
403889c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+4] + x3*bdiag[cnt+8] + x4*bdiag[cnt+12];
403989c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+5] + x3*bdiag[cnt+9] + x4*bdiag[cnt+13];
404089c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+6] + x3*bdiag[cnt+10] + x4*bdiag[cnt+14];
404189c6957cSBarry Smith       tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+7] + x3*bdiag[cnt+11] + x4*bdiag[cnt+15];
404289c6957cSBarry Smith       x[row++] = tmp1;
404389c6957cSBarry Smith       x[row++] = tmp2;
404489c6957cSBarry Smith       x[row++] = tmp3;
404589c6957cSBarry Smith       x[row++] = tmp4;
404689c6957cSBarry Smith       cnt     += 16;
404789c6957cSBarry Smith       break;
404889c6957cSBarry Smith     case 5:
404989c6957cSBarry Smith       x1       = b[row]; x2 = b[row+1]; x3 = b[row+2]; x4 = b[row+3]; x5 = b[row+4];
405089c6957cSBarry Smith       tmp1     = x1*bdiag[cnt] + x2*bdiag[cnt+5] + x3*bdiag[cnt+10] + x4*bdiag[cnt+15] + x5*bdiag[cnt+20];
405189c6957cSBarry Smith       tmp2     = x1*bdiag[cnt+1] + x2*bdiag[cnt+6] + x3*bdiag[cnt+11] + x4*bdiag[cnt+16] + x5*bdiag[cnt+21];
405289c6957cSBarry Smith       tmp3     = x1*bdiag[cnt+2] + x2*bdiag[cnt+7] + x3*bdiag[cnt+12] + x4*bdiag[cnt+17] + x5*bdiag[cnt+22];
405389c6957cSBarry Smith       tmp4     = x1*bdiag[cnt+3] + x2*bdiag[cnt+8] + x3*bdiag[cnt+13] + x4*bdiag[cnt+18] + x5*bdiag[cnt+23];
405489c6957cSBarry Smith       tmp5     = x1*bdiag[cnt+4] + x2*bdiag[cnt+9] + x3*bdiag[cnt+14] + x4*bdiag[cnt+19] + x5*bdiag[cnt+24];
405589c6957cSBarry Smith       x[row++] = tmp1;
405689c6957cSBarry Smith       x[row++] = tmp2;
405789c6957cSBarry Smith       x[row++] = tmp3;
405889c6957cSBarry Smith       x[row++] = tmp4;
405989c6957cSBarry Smith       x[row++] = tmp5;
406089c6957cSBarry Smith       cnt     += 25;
406189c6957cSBarry Smith       break;
406289c6957cSBarry Smith     default:
4063e32f2f54SBarry Smith       SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Inode size %D not supported",sizes[i]);
406489c6957cSBarry Smith     }
406589c6957cSBarry Smith   }
406689c6957cSBarry Smith   ierr = PetscLogFlops(2*cnt);CHKERRQ(ierr);
406789c6957cSBarry Smith   ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr);
40683649974fSBarry Smith   ierr = VecRestoreArrayRead(bb,&b);CHKERRQ(ierr);
406989c6957cSBarry Smith   PetscFunctionReturn(0);
407089c6957cSBarry Smith }
407189c6957cSBarry Smith 
40724c1414c8SBarry Smith /*
40734c1414c8SBarry Smith     samestructure indicates that the matrix has not changed its nonzero structure so we
40744c1414c8SBarry Smith     do not need to recompute the inodes
40754c1414c8SBarry Smith */
40764c1414c8SBarry Smith #undef __FUNCT__
4077*a02bda8eSBarry Smith #define __FUNCT__ "MatSeqAIJCheckInode"
4078*a02bda8eSBarry Smith PetscErrorCode MatSeqAIJCheckInode(Mat A)
40794c1414c8SBarry Smith {
40804c1414c8SBarry Smith   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
40814c1414c8SBarry Smith   PetscErrorCode ierr;
40828758e1faSBarry Smith   PetscInt       i,j,m,nzx,nzy,*ns,node_count,blk_size;
4083ace3abfcSBarry Smith   PetscBool      flag;
40848758e1faSBarry Smith   const PetscInt *idx,*idy,*ii;
40854c1414c8SBarry Smith 
40864c1414c8SBarry Smith   PetscFunctionBegin;
4087d74fe821SBarry Smith   if (!a->inode.use) PetscFunctionReturn(0);
4088*a02bda8eSBarry Smith   if (a->inode.checked && A->nonzerostate == a->inode.mat_nonzerostate) PetscFunctionReturn(0);
40894c1414c8SBarry Smith 
4090d0f46423SBarry Smith   m = A->rmap->n;
40912205254eSKarl Rupp   if (a->inode.size) ns = a->inode.size;
40922205254eSKarl Rupp   else {
4093854ce69bSBarry Smith     ierr = PetscMalloc1(m+1,&ns);CHKERRQ(ierr);
40942205254eSKarl Rupp   }
40954c1414c8SBarry Smith 
40964c1414c8SBarry Smith   i          = 0;
40974c1414c8SBarry Smith   node_count = 0;
40984c1414c8SBarry Smith   idx        = a->j;
40994c1414c8SBarry Smith   ii         = a->i;
41004c1414c8SBarry Smith   while (i < m) {                /* For each row */
41014c1414c8SBarry Smith     nzx = ii[i+1] - ii[i];       /* Number of nonzeros */
41024c1414c8SBarry Smith     /* Limits the number of elements in a node to 'a->inode.limit' */
41034c1414c8SBarry Smith     for (j=i+1,idy=idx,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
41044c1414c8SBarry Smith       nzy = ii[j+1] - ii[j];     /* Same number of nonzeros */
41054c1414c8SBarry Smith       if (nzy != nzx) break;
41064c1414c8SBarry Smith       idy += nzx;              /* Same nonzero pattern */
41074c1414c8SBarry Smith       ierr = PetscMemcmp(idx,idy,nzx*sizeof(PetscInt),&flag);CHKERRQ(ierr);
41084c1414c8SBarry Smith       if (!flag) break;
41094c1414c8SBarry Smith     }
41104c1414c8SBarry Smith     ns[node_count++] = blk_size;
41114c1414c8SBarry Smith     idx             += blk_size*nzx;
41124c1414c8SBarry Smith     i                = j;
41134c1414c8SBarry Smith   }
41144c1414c8SBarry Smith   /* If not enough inodes found,, do not use inode version of the routines */
4115be6adb11SBarry Smith   if (!m || node_count > .8*m) {
41164c1414c8SBarry Smith     ierr = PetscFree(ns);CHKERRQ(ierr);
41172205254eSKarl Rupp 
41184c1414c8SBarry Smith     a->inode.node_count       = 0;
41190298fd71SBarry Smith     a->inode.size             = NULL;
41204c1414c8SBarry Smith     a->inode.use              = PETSC_FALSE;
4121ded6e084SBarry Smith     A->ops->mult              = MatMult_SeqAIJ;
4122ded6e084SBarry Smith     A->ops->sor               = MatSOR_SeqAIJ;
4123ded6e084SBarry Smith     A->ops->multadd           = MatMultAdd_SeqAIJ;
4124ded6e084SBarry Smith     A->ops->getrowij          = MatGetRowIJ_SeqAIJ;
4125ded6e084SBarry Smith     A->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ;
4126ded6e084SBarry Smith     A->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ;
4127ded6e084SBarry Smith     A->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ;
4128ded6e084SBarry Smith     A->ops->coloringpatch     = 0;
4129ded6e084SBarry Smith     A->ops->multdiagonalblock = 0;
41302205254eSKarl Rupp 
41314c1414c8SBarry Smith     ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr);
41324c1414c8SBarry Smith   } else {
4133d5f3da31SBarry Smith     if (!A->factortype) {
41344108e4d5SBarry Smith       A->ops->mult              = MatMult_SeqAIJ_Inode;
41354108e4d5SBarry Smith       A->ops->sor               = MatSOR_SeqAIJ_Inode;
41364108e4d5SBarry Smith       A->ops->multadd           = MatMultAdd_SeqAIJ_Inode;
4137375a6242SBarry Smith       A->ops->multdiagonalblock = MatMultDiagonalBlock_SeqAIJ_Inode;
4138375a6242SBarry Smith       if (A->rmap->n == A->cmap->n) {
41394108e4d5SBarry Smith         A->ops->getrowij          = MatGetRowIJ_SeqAIJ_Inode;
41404108e4d5SBarry Smith         A->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ_Inode;
41414108e4d5SBarry Smith         A->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ_Inode;
41424108e4d5SBarry Smith         A->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ_Inode;
41434108e4d5SBarry Smith         A->ops->coloringpatch     = MatColoringPatch_SeqAIJ_Inode;
4144375a6242SBarry Smith       }
4145d3ac4fa3SBarry Smith     } else {
4146d3ac4fa3SBarry Smith       A->ops->solve = MatSolve_SeqAIJ_Inode_inplace;
4147d3ac4fa3SBarry Smith     }
41484c1414c8SBarry Smith     a->inode.node_count = node_count;
41494c1414c8SBarry Smith     a->inode.size       = ns;
41504c1414c8SBarry Smith     ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr);
41514c1414c8SBarry Smith   }
4152be6adb11SBarry Smith   a->inode.checked          = PETSC_TRUE;
4153*a02bda8eSBarry Smith   a->inode.mat_nonzerostate = A->nonzerostate;
41544c1414c8SBarry Smith   PetscFunctionReturn(0);
41554c1414c8SBarry Smith }
41564c1414c8SBarry Smith 
415717454e89SShri Abhyankar #undef __FUNCT__
4158150f0143SBarry Smith #define __FUNCT__ "MatDuplicate_SeqAIJ_Inode"
4159150f0143SBarry Smith PetscErrorCode MatDuplicate_SeqAIJ_Inode(Mat A,MatDuplicateOption cpvalues,Mat *C)
4160150f0143SBarry Smith {
4161150f0143SBarry Smith   Mat            B =*C;
4162150f0143SBarry Smith   Mat_SeqAIJ     *c=(Mat_SeqAIJ*)B->data,*a=(Mat_SeqAIJ*)A->data;
4163150f0143SBarry Smith   PetscErrorCode ierr;
4164150f0143SBarry Smith   PetscInt       m=A->rmap->n;
4165150f0143SBarry Smith 
4166150f0143SBarry Smith   PetscFunctionBegin;
4167150f0143SBarry Smith   c->inode.use       = a->inode.use;
4168150f0143SBarry Smith   c->inode.limit     = a->inode.limit;
4169150f0143SBarry Smith   c->inode.max_limit = a->inode.max_limit;
4170150f0143SBarry Smith   if (a->inode.size) {
4171854ce69bSBarry Smith     ierr                = PetscMalloc1(m+1,&c->inode.size);CHKERRQ(ierr);
4172150f0143SBarry Smith     c->inode.node_count = a->inode.node_count;
4173150f0143SBarry Smith     ierr                = PetscMemcpy(c->inode.size,a->inode.size,(m+1)*sizeof(PetscInt));CHKERRQ(ierr);
4174*a02bda8eSBarry Smith     /* note the table of functions below should match that in MatSeqAIJCheckInode() */
41752c451681SBarry Smith     if (!B->factortype) {
41762c451681SBarry Smith       B->ops->mult              = MatMult_SeqAIJ_Inode;
41772c451681SBarry Smith       B->ops->sor               = MatSOR_SeqAIJ_Inode;
41782c451681SBarry Smith       B->ops->multadd           = MatMultAdd_SeqAIJ_Inode;
41792c451681SBarry Smith       B->ops->getrowij          = MatGetRowIJ_SeqAIJ_Inode;
41802c451681SBarry Smith       B->ops->restorerowij      = MatRestoreRowIJ_SeqAIJ_Inode;
41812c451681SBarry Smith       B->ops->getcolumnij       = MatGetColumnIJ_SeqAIJ_Inode;
41822c451681SBarry Smith       B->ops->restorecolumnij   = MatRestoreColumnIJ_SeqAIJ_Inode;
41832c451681SBarry Smith       B->ops->coloringpatch     = MatColoringPatch_SeqAIJ_Inode;
41842c451681SBarry Smith       B->ops->multdiagonalblock = MatMultDiagonalBlock_SeqAIJ_Inode;
4185150f0143SBarry Smith     } else {
41862c451681SBarry Smith       B->ops->solve = MatSolve_SeqAIJ_Inode_inplace;
4187150f0143SBarry Smith     }
4188150f0143SBarry Smith   } else {
4189150f0143SBarry Smith     c->inode.size       = 0;
4190150f0143SBarry Smith     c->inode.node_count = 0;
4191150f0143SBarry Smith   }
4192150f0143SBarry Smith   c->inode.ibdiagvalid = PETSC_FALSE;
4193150f0143SBarry Smith   c->inode.ibdiag      = 0;
4194150f0143SBarry Smith   c->inode.bdiag       = 0;
4195150f0143SBarry Smith   PetscFunctionReturn(0);
4196150f0143SBarry Smith }
4197150f0143SBarry Smith 
4198150f0143SBarry Smith #undef __FUNCT__
419917454e89SShri Abhyankar #define __FUNCT__ "MatGetRow_FactoredLU"
42008758e1faSBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatGetRow_FactoredLU(PetscInt *cols,PetscInt nzl,PetscInt nzu,PetscInt nz,const PetscInt *ai,const PetscInt *aj,const PetscInt *adiag,PetscInt row)
420117454e89SShri Abhyankar {
42028758e1faSBarry Smith   PetscInt       k;
42038758e1faSBarry Smith   const PetscInt *vi;
42046e111a19SKarl Rupp 
420517454e89SShri Abhyankar   PetscFunctionBegin;
420617454e89SShri Abhyankar   vi = aj + ai[row];
420717454e89SShri Abhyankar   for (k=0; k<nzl; k++) cols[k] = vi[k];
420817454e89SShri Abhyankar   vi        = aj + adiag[row];
420917454e89SShri Abhyankar   cols[nzl] = vi[0];
421017454e89SShri Abhyankar   vi        = aj + adiag[row+1]+1;
421117454e89SShri Abhyankar   for (k=0; k<nzu; k++) cols[nzl+1+k] = vi[k];
421217454e89SShri Abhyankar   PetscFunctionReturn(0);
421317454e89SShri Abhyankar }
42146936b636SHong Zhang /*
4215*a02bda8eSBarry Smith    MatSeqAIJCheckInode_FactorLU - Check Inode for factored seqaij matrix.
4216*a02bda8eSBarry Smith    Modified from MatSeqAIJCheckInode().
42176936b636SHong Zhang 
42186936b636SHong Zhang    Input Parameters:
4219abb87a52SBarry Smith .  Mat A - ILU or LU matrix factor
4220abb87a52SBarry Smith 
42216936b636SHong Zhang */
4222019b515eSShri Abhyankar #undef __FUNCT__
4223*a02bda8eSBarry Smith #define __FUNCT__ "MatSeqAIJCheckInode_FactorLU"
4224*a02bda8eSBarry Smith PetscErrorCode MatSeqAIJCheckInode_FactorLU(Mat A)
4225019b515eSShri Abhyankar {
4226019b515eSShri Abhyankar   Mat_SeqAIJ     *a = (Mat_SeqAIJ*)A->data;
4227019b515eSShri Abhyankar   PetscErrorCode ierr;
4228019b515eSShri Abhyankar   PetscInt       i,j,m,nzl1,nzu1,nzl2,nzu2,nzx,nzy,node_count,blk_size;
42298758e1faSBarry Smith   PetscInt       *cols1,*cols2,*ns;
42308758e1faSBarry Smith   const PetscInt *ai = a->i,*aj = a->j, *adiag = a->diag;
4231ace3abfcSBarry Smith   PetscBool      flag;
4232019b515eSShri Abhyankar 
4233019b515eSShri Abhyankar   PetscFunctionBegin;
4234019b515eSShri Abhyankar   if (!a->inode.use)    PetscFunctionReturn(0);
4235abb87a52SBarry Smith   if (a->inode.checked) PetscFunctionReturn(0);
4236019b515eSShri Abhyankar 
4237019b515eSShri Abhyankar   m = A->rmap->n;
42382205254eSKarl Rupp   if (a->inode.size) ns = a->inode.size;
42392205254eSKarl Rupp   else {
4240854ce69bSBarry Smith     ierr = PetscMalloc1(m+1,&ns);CHKERRQ(ierr);
42412205254eSKarl Rupp   }
4242019b515eSShri Abhyankar 
4243019b515eSShri Abhyankar   i          = 0;
4244019b515eSShri Abhyankar   node_count = 0;
4245dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&cols1,m,&cols2);CHKERRQ(ierr);
4246019b515eSShri Abhyankar   while (i < m) {                /* For each row */
4247019b515eSShri Abhyankar     nzl1 = ai[i+1] - ai[i];       /* Number of nonzeros in L */
4248019b515eSShri Abhyankar     nzu1 = adiag[i] - adiag[i+1] - 1; /* Number of nonzeros in U excluding diagonal*/
4249019b515eSShri Abhyankar     nzx  = nzl1 + nzu1 + 1;
4250019b515eSShri Abhyankar     MatGetRow_FactoredLU(cols1,nzl1,nzu1,nzx,ai,aj,adiag,i);
4251019b515eSShri Abhyankar 
4252019b515eSShri Abhyankar     /* Limits the number of elements in a node to 'a->inode.limit' */
4253019b515eSShri Abhyankar     for (j=i+1,blk_size=1; j<m && blk_size <a->inode.limit; ++j,++blk_size) {
4254019b515eSShri Abhyankar       nzl2 = ai[j+1] - ai[j];
4255019b515eSShri Abhyankar       nzu2 = adiag[j] - adiag[j+1] - 1;
4256019b515eSShri Abhyankar       nzy  = nzl2 + nzu2 + 1;
4257019b515eSShri Abhyankar       if (nzy != nzx) break;
425817454e89SShri Abhyankar       ierr = MatGetRow_FactoredLU(cols2,nzl2,nzu2,nzy,ai,aj,adiag,j);CHKERRQ(ierr);
4259019b515eSShri Abhyankar       ierr = PetscMemcmp(cols1,cols2,nzx*sizeof(PetscInt),&flag);CHKERRQ(ierr);
42608758e1faSBarry Smith       if (!flag) break;
4261019b515eSShri Abhyankar     }
4262019b515eSShri Abhyankar     ns[node_count++] = blk_size;
4263019b515eSShri Abhyankar     i                = j;
4264019b515eSShri Abhyankar   }
42658758e1faSBarry Smith   ierr             = PetscFree2(cols1,cols2);CHKERRQ(ierr);
4266019b515eSShri Abhyankar   /* If not enough inodes found,, do not use inode version of the routines */
4267be6adb11SBarry Smith   if (!m || node_count > .8*m) {
4268019b515eSShri Abhyankar     ierr = PetscFree(ns);CHKERRQ(ierr);
42692205254eSKarl Rupp 
4270019b515eSShri Abhyankar     a->inode.node_count = 0;
42710298fd71SBarry Smith     a->inode.size       = NULL;
4272019b515eSShri Abhyankar     a->inode.use        = PETSC_FALSE;
42732205254eSKarl Rupp 
4274019b515eSShri Abhyankar     ierr = PetscInfo2(A,"Found %D nodes out of %D rows. Not using Inode routines\n",node_count,m);CHKERRQ(ierr);
4275019b515eSShri Abhyankar   } else {
4276019b515eSShri Abhyankar     A->ops->mult              = 0;
4277019b515eSShri Abhyankar     A->ops->sor               = 0;
4278019b515eSShri Abhyankar     A->ops->multadd           = 0;
4279019b515eSShri Abhyankar     A->ops->getrowij          = 0;
4280019b515eSShri Abhyankar     A->ops->restorerowij      = 0;
4281019b515eSShri Abhyankar     A->ops->getcolumnij       = 0;
4282019b515eSShri Abhyankar     A->ops->restorecolumnij   = 0;
4283019b515eSShri Abhyankar     A->ops->coloringpatch     = 0;
4284019b515eSShri Abhyankar     A->ops->multdiagonalblock = 0;
4285019b515eSShri Abhyankar     a->inode.node_count       = node_count;
4286019b515eSShri Abhyankar     a->inode.size             = ns;
42872205254eSKarl Rupp 
4288019b515eSShri Abhyankar     ierr = PetscInfo3(A,"Found %D nodes of %D. Limit used: %D. Using Inode routines\n",node_count,m,a->inode.limit);CHKERRQ(ierr);
4289019b515eSShri Abhyankar   }
4290be6adb11SBarry Smith   a->inode.checked = PETSC_TRUE;
4291019b515eSShri Abhyankar   PetscFunctionReturn(0);
4292019b515eSShri Abhyankar }
4293019b515eSShri Abhyankar 
4294acf2f550SJed Brown #undef __FUNCT__
4295acf2f550SJed Brown #define __FUNCT__ "MatSeqAIJInvalidateDiagonal_Inode"
4296acf2f550SJed Brown PetscErrorCode MatSeqAIJInvalidateDiagonal_Inode(Mat A)
4297acf2f550SJed Brown {
4298acf2f550SJed Brown   Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data;
4299acf2f550SJed Brown 
4300acf2f550SJed Brown   PetscFunctionBegin;
4301acf2f550SJed Brown   a->inode.ibdiagvalid = PETSC_FALSE;
4302acf2f550SJed Brown   PetscFunctionReturn(0);
4303acf2f550SJed Brown }
4304acf2f550SJed Brown 
43054c1414c8SBarry Smith /*
43064c1414c8SBarry Smith      This is really ugly. if inodes are used this replaces the
43074c1414c8SBarry Smith   permutations with ones that correspond to rows/cols of the matrix
43084c1414c8SBarry Smith   rather then inode blocks
43094c1414c8SBarry Smith */
43104c1414c8SBarry Smith #undef __FUNCT__
43114c1414c8SBarry Smith #define __FUNCT__ "MatInodeAdjustForInodes"
43127087cfbeSBarry Smith PetscErrorCode  MatInodeAdjustForInodes(Mat A,IS *rperm,IS *cperm)
43134c1414c8SBarry Smith {
43144ac538c5SBarry Smith   PetscErrorCode ierr;
43154c1414c8SBarry Smith 
43164c1414c8SBarry Smith   PetscFunctionBegin;
43174ac538c5SBarry Smith   ierr = PetscTryMethod(A,"MatInodeAdjustForInodes_C",(Mat,IS*,IS*),(A,rperm,cperm));CHKERRQ(ierr);
43184c1414c8SBarry Smith   PetscFunctionReturn(0);
43194c1414c8SBarry Smith }
43204c1414c8SBarry Smith 
43214c1414c8SBarry Smith #undef __FUNCT__
432253c77d0aSJed Brown #define __FUNCT__ "MatInodeAdjustForInodes_SeqAIJ_Inode"
43237087cfbeSBarry Smith PetscErrorCode  MatInodeAdjustForInodes_SeqAIJ_Inode(Mat A,IS *rperm,IS *cperm)
43244c1414c8SBarry Smith {
43254c1414c8SBarry Smith   Mat_SeqAIJ     *a=(Mat_SeqAIJ*)A->data;
43264c1414c8SBarry Smith   PetscErrorCode ierr;
43275d0c19d7SBarry Smith   PetscInt       m = A->rmap->n,n = A->cmap->n,i,j,nslim_row = a->inode.node_count;
43285d0c19d7SBarry Smith   const PetscInt *ridx,*cidx;
43294c1414c8SBarry Smith   PetscInt       row,col,*permr,*permc,*ns_row =  a->inode.size,*tns,start_val,end_val,indx;
43304c1414c8SBarry Smith   PetscInt       nslim_col,*ns_col;
43314c1414c8SBarry Smith   IS             ris = *rperm,cis = *cperm;
43324c1414c8SBarry Smith 
43334c1414c8SBarry Smith   PetscFunctionBegin;
43344c1414c8SBarry Smith   if (!a->inode.size) PetscFunctionReturn(0); /* no inodes so return */
43354c1414c8SBarry Smith   if (a->inode.node_count == m) PetscFunctionReturn(0); /* all inodes are of size 1 */
43364c1414c8SBarry Smith 
43374c1414c8SBarry Smith   ierr = Mat_CreateColInode(A,&nslim_col,&ns_col);CHKERRQ(ierr);
4338854ce69bSBarry Smith   ierr = PetscMalloc1(((nslim_row>nslim_col) ? nslim_row : nslim_col)+1,&tns);CHKERRQ(ierr);
4339dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&permr,n,&permc);CHKERRQ(ierr);
43404c1414c8SBarry Smith 
43414c1414c8SBarry Smith   ierr = ISGetIndices(ris,&ridx);CHKERRQ(ierr);
43424c1414c8SBarry Smith   ierr = ISGetIndices(cis,&cidx);CHKERRQ(ierr);
43434c1414c8SBarry Smith 
43444c1414c8SBarry Smith   /* Form the inode structure for the rows of permuted matric using inv perm*/
43454c1414c8SBarry Smith   for (i=0,tns[0]=0; i<nslim_row; ++i) tns[i+1] = tns[i] + ns_row[i];
43464c1414c8SBarry Smith 
43474c1414c8SBarry Smith   /* Construct the permutations for rows*/
43484c1414c8SBarry Smith   for (i=0,row = 0; i<nslim_row; ++i) {
43494c1414c8SBarry Smith     indx      = ridx[i];
43504c1414c8SBarry Smith     start_val = tns[indx];
43514c1414c8SBarry Smith     end_val   = tns[indx + 1];
43524c1414c8SBarry Smith     for (j=start_val; j<end_val; ++j,++row) permr[row]= j;
43534c1414c8SBarry Smith   }
43544c1414c8SBarry Smith 
43554c1414c8SBarry Smith   /* Form the inode structure for the columns of permuted matrix using inv perm*/
43564c1414c8SBarry Smith   for (i=0,tns[0]=0; i<nslim_col; ++i) tns[i+1] = tns[i] + ns_col[i];
43574c1414c8SBarry Smith 
43584c1414c8SBarry Smith   /* Construct permutations for columns */
43594c1414c8SBarry Smith   for (i=0,col=0; i<nslim_col; ++i) {
43604c1414c8SBarry Smith     indx      = cidx[i];
43614c1414c8SBarry Smith     start_val = tns[indx];
43624c1414c8SBarry Smith     end_val   = tns[indx + 1];
43634c1414c8SBarry Smith     for (j = start_val; j<end_val; ++j,++col) permc[col]= j;
43644c1414c8SBarry Smith   }
43654c1414c8SBarry Smith 
436670b3c8c7SBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,n,permr,PETSC_COPY_VALUES,rperm);CHKERRQ(ierr);
43670e83c824SBarry Smith   ierr = ISSetPermutation(*rperm);CHKERRQ(ierr);
436870b3c8c7SBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,n,permc,PETSC_COPY_VALUES,cperm);CHKERRQ(ierr);
43690e83c824SBarry Smith   ierr = ISSetPermutation(*cperm);CHKERRQ(ierr);
43704c1414c8SBarry Smith 
43714c1414c8SBarry Smith   ierr = ISRestoreIndices(ris,&ridx);CHKERRQ(ierr);
43724c1414c8SBarry Smith   ierr = ISRestoreIndices(cis,&cidx);CHKERRQ(ierr);
43734c1414c8SBarry Smith 
43744c1414c8SBarry Smith   ierr = PetscFree(ns_col);CHKERRQ(ierr);
43750e83c824SBarry Smith   ierr = PetscFree2(permr,permc);CHKERRQ(ierr);
43766bf464f9SBarry Smith   ierr = ISDestroy(&cis);CHKERRQ(ierr);
43776bf464f9SBarry Smith   ierr = ISDestroy(&ris);CHKERRQ(ierr);
43784c1414c8SBarry Smith   ierr = PetscFree(tns);CHKERRQ(ierr);
43794c1414c8SBarry Smith   PetscFunctionReturn(0);
43804c1414c8SBarry Smith }
43814c1414c8SBarry Smith 
43824c1414c8SBarry Smith #undef __FUNCT__
43834c1414c8SBarry Smith #define __FUNCT__ "MatInodeGetInodeSizes"
43844c1414c8SBarry Smith /*@C
43854c1414c8SBarry Smith    MatInodeGetInodeSizes - Returns the inode information of the Inode matrix.
43864c1414c8SBarry Smith 
43873f9fe445SBarry Smith    Not Collective
43884c1414c8SBarry Smith 
43894c1414c8SBarry Smith    Input Parameter:
43904c1414c8SBarry Smith .  A - the Inode matrix or matrix derived from the Inode class -- e.g., SeqAIJ
43914c1414c8SBarry Smith 
43924c1414c8SBarry Smith    Output Parameter:
43934c1414c8SBarry Smith +  node_count - no of inodes present in the matrix.
43944c1414c8SBarry Smith .  sizes      - an array of size node_count,with sizes of each inode.
43954c1414c8SBarry Smith -  limit      - the max size used to generate the inodes.
43964c1414c8SBarry Smith 
43974c1414c8SBarry Smith    Level: advanced
43984c1414c8SBarry Smith 
43994c1414c8SBarry Smith    Notes: This routine returns some internal storage information
44004c1414c8SBarry Smith    of the matrix, it is intended to be used by advanced users.
44014c1414c8SBarry Smith    It should be called after the matrix is assembled.
44024c1414c8SBarry Smith    The contents of the sizes[] array should not be changed.
44030298fd71SBarry Smith    NULL may be passed for information not requested.
44044c1414c8SBarry Smith 
44054c1414c8SBarry Smith .keywords: matrix, seqaij, get, inode
44064c1414c8SBarry Smith 
44074c1414c8SBarry Smith .seealso: MatGetInfo()
44084c1414c8SBarry Smith @*/
44097087cfbeSBarry Smith PetscErrorCode  MatInodeGetInodeSizes(Mat A,PetscInt *node_count,PetscInt *sizes[],PetscInt *limit)
44104c1414c8SBarry Smith {
44114c1414c8SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt*,PetscInt*[],PetscInt*);
44124c1414c8SBarry Smith 
44134c1414c8SBarry Smith   PetscFunctionBegin;
4414e32f2f54SBarry Smith   if (!A->assembled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
44150005d66cSJed Brown   ierr = PetscObjectQueryFunction((PetscObject)A,"MatInodeGetInodeSizes_C",&f);CHKERRQ(ierr);
44164c1414c8SBarry Smith   if (f) {
44174c1414c8SBarry Smith     ierr = (*f)(A,node_count,sizes,limit);CHKERRQ(ierr);
44184c1414c8SBarry Smith   }
44194c1414c8SBarry Smith   PetscFunctionReturn(0);
44204c1414c8SBarry Smith }
44214c1414c8SBarry Smith 
44224c1414c8SBarry Smith #undef __FUNCT__
44234108e4d5SBarry Smith #define __FUNCT__ "MatInodeGetInodeSizes_SeqAIJ_Inode"
44247087cfbeSBarry Smith PetscErrorCode  MatInodeGetInodeSizes_SeqAIJ_Inode(Mat A,PetscInt *node_count,PetscInt *sizes[],PetscInt *limit)
44254c1414c8SBarry Smith {
44264c1414c8SBarry Smith   Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data;
44274c1414c8SBarry Smith 
44284c1414c8SBarry Smith   PetscFunctionBegin;
44294c1414c8SBarry Smith   if (node_count) *node_count = a->inode.node_count;
44304c1414c8SBarry Smith   if (sizes)      *sizes      = a->inode.size;
44314c1414c8SBarry Smith   if (limit)      *limit      = a->inode.limit;
44324c1414c8SBarry Smith   PetscFunctionReturn(0);
44334c1414c8SBarry Smith }
4434