1e36ced11SJunchao Zhang #include <petsc_kokkos.hpp> 211d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 3c0c276a7Ssdargavi #include <petscmat_kokkos.hpp> 4076ba34aSJunchao Zhang #include <petscpkg_version.h> 5152b3e56SJunchao Zhang #include <petsc/private/petscimpl.h> 642550becSJunchao Zhang #include <petsc/private/sfimpl.h> 7aac854edSJunchao Zhang #include <petsc/private/kokkosimpl.hpp> 87233ce55SJed Brown #include <petscsys.h> 98c3ff71bSJunchao Zhang 108c3ff71bSJunchao Zhang #include <Kokkos_Core.hpp> 11f0cf5187SStefano Zampini #include <KokkosBlas.hpp> 128c3ff71bSJunchao Zhang #include <KokkosSparse_CrsMatrix.hpp> 13cc6e31f1SJunchao Zhang 14cc6e31f1SJunchao Zhang // To suppress compiler warnings: 15cc6e31f1SJunchao Zhang // /path/include/KokkosSparse_spmv_bsrmatrix_tpl_spec_decl.hpp:434:63: 16cc6e31f1SJunchao Zhang // warning: 'cusparseStatus_t cusparseDbsrmm(cusparseHandle_t, cusparseDirection_t, cusparseOperation_t, 17cc6e31f1SJunchao Zhang // cusparseOperation_t, int, int, int, int, const double*, cusparseMatDescr_t, const double*, const int*, const int*, 18cc6e31f1SJunchao Zhang // int, const double*, int, const double*, double*, int)' is deprecated: please use cusparseSpMM instead [-Wdeprecated-declarations] 19cc6e31f1SJunchao Zhang PETSC_PRAGMA_DIAGNOSTIC_IGNORED_BEGIN("-Wdeprecated-declarations") 208c3ff71bSJunchao Zhang #include <KokkosSparse_spmv.hpp> 21cc6e31f1SJunchao Zhang PETSC_PRAGMA_DIAGNOSTIC_IGNORED_END() 22cc6e31f1SJunchao Zhang 2386a27549SJunchao Zhang #include <KokkosSparse_spiluk.hpp> 2486a27549SJunchao Zhang #include <KokkosSparse_sptrsv.hpp> 25076ba34aSJunchao Zhang #include <KokkosSparse_spgemm.hpp> 26076ba34aSJunchao Zhang #include <KokkosSparse_spadd.hpp> 279d13fa56SJunchao Zhang #include <KokkosBatched_LU_Decl.hpp> 289d13fa56SJunchao Zhang #include <KokkosBatched_InverseLU_Decl.hpp> 2986a27549SJunchao Zhang 3042550becSJunchao Zhang #include <../src/mat/impls/aij/seq/kokkos/aijkok.hpp> 318c3ff71bSJunchao Zhang 320e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_GE(3, 7, 0) 33f98996d3SJunchao Zhang #include <KokkosSparse_Utils.hpp> 34f98996d3SJunchao Zhang using KokkosSparse::sort_crs_matrix; 359371c9d4SSatish Balay using KokkosSparse::Impl::transpose_matrix; 36f98996d3SJunchao Zhang #else 37f98996d3SJunchao Zhang #include <KokkosKernels_Sorting.hpp> 38f98996d3SJunchao Zhang using KokkosKernels::sort_crs_matrix; 399371c9d4SSatish Balay using KokkosKernels::Impl::transpose_matrix; 40f98996d3SJunchao Zhang #endif 41f98996d3SJunchao Zhang 42aac854edSJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_GE(4, 6, 0) 43aac854edSJunchao Zhang using KokkosSparse::spiluk_symbolic; 44aac854edSJunchao Zhang using KokkosSparse::spiluk_numeric; 45aac854edSJunchao Zhang using KokkosSparse::sptrsv_symbolic; 46aac854edSJunchao Zhang using KokkosSparse::sptrsv_solve; 47aac854edSJunchao Zhang using KokkosSparse::Experimental::SPTRSVAlgorithm; 48aac854edSJunchao Zhang using KokkosSparse::Experimental::SPILUKAlgorithm; 49aac854edSJunchao Zhang #else 50aac854edSJunchao Zhang using KokkosSparse::Experimental::spiluk_symbolic; 51aac854edSJunchao Zhang using KokkosSparse::Experimental::spiluk_numeric; 52aac854edSJunchao Zhang using KokkosSparse::Experimental::sptrsv_symbolic; 53aac854edSJunchao Zhang using KokkosSparse::Experimental::sptrsv_solve; 54aac854edSJunchao Zhang using KokkosSparse::Experimental::SPTRSVAlgorithm; 55aac854edSJunchao Zhang using KokkosSparse::Experimental::SPILUKAlgorithm; 56aac854edSJunchao Zhang #endif 57aac854edSJunchao Zhang 588c3ff71bSJunchao Zhang static PetscErrorCode MatSetOps_SeqAIJKokkos(Mat); /* Forward declaration */ 598c3ff71bSJunchao Zhang 60076ba34aSJunchao Zhang /* MatAssemblyEnd_SeqAIJKokkos() happens when we finalized nonzeros of the matrix, either after 61076ba34aSJunchao Zhang we assembled the matrix on host, or after we directly produced the matrix data on device (ex., through MatMatMult). 62076ba34aSJunchao Zhang In the latter case, it is important to set a_dual's sync state correctly. 63076ba34aSJunchao Zhang */ 64d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAssemblyEnd_SeqAIJKokkos(Mat A, MatAssemblyType mode) 65d71ae5a4SJacob Faibussowitsch { 66076ba34aSJunchao Zhang Mat_SeqAIJ *aijseq; 67076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 688c3ff71bSJunchao Zhang 698c3ff71bSJunchao Zhang PetscFunctionBegin; 703ba16761SJacob Faibussowitsch if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(PETSC_SUCCESS); 719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd_SeqAIJ(A, mode)); 72076ba34aSJunchao Zhang 73076ba34aSJunchao Zhang aijseq = static_cast<Mat_SeqAIJ *>(A->data); 74076ba34aSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 75076ba34aSJunchao Zhang 76076ba34aSJunchao Zhang /* If aijkok does not exist, we just copy i, j to device. 77076ba34aSJunchao Zhang If aijkok already exists, but the device's nonzero pattern does not match with the host's, we assume the latest data is on host. 78076ba34aSJunchao Zhang In both cases, we build a new aijkok structure. 79076ba34aSJunchao Zhang */ 80076ba34aSJunchao Zhang if (!aijkok || aijkok->nonzerostate != A->nonzerostate) { /* aijkok might not exist yet or nonzero pattern has changed */ 81076ba34aSJunchao Zhang delete aijkok; 82f4747e26SJunchao Zhang aijkok = new Mat_SeqAIJKokkos(A->rmap->n, A->cmap->n, aijseq, A->nonzerostate, PETSC_FALSE /*don't copy mat values to device*/); 83076ba34aSJunchao Zhang A->spptr = aijkok; 84f4747e26SJunchao Zhang } else if (A->rmap->n && aijkok->diag_dual.extent(0) == 0) { // MatProduct might directly produce AIJ on device, but not the diag. 85f4747e26SJunchao Zhang MatRowMapKokkosViewHost diag_h(aijseq->diag, A->rmap->n); 86f4747e26SJunchao Zhang auto diag_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), diag_h); 87f4747e26SJunchao Zhang aijkok->diag_dual = MatRowMapKokkosDualView(diag_d, diag_h); 88076ba34aSJunchao Zhang } 893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 908c3ff71bSJunchao Zhang } 918c3ff71bSJunchao Zhang 9286a27549SJunchao Zhang /* Sync CSR data to device if not yet */ 93d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSeqAIJKokkosSyncDevice(Mat A) 94d71ae5a4SJacob Faibussowitsch { 958c3ff71bSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 968c3ff71bSJunchao Zhang 978c3ff71bSJunchao Zhang PetscFunctionBegin; 98aaa8cc7dSPierre Jolivet PetscCheck(A->factortype == MAT_FACTOR_NONE, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Can't sync factorized matrix from host to device"); 995f80ce2aSJacob Faibussowitsch PetscCheck(aijkok, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "Unexpected NULL (Mat_SeqAIJKokkos*)A->spptr"); 100076ba34aSJunchao Zhang if (aijkok->a_dual.need_sync_device()) { 101*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncDevice(aijkok->a_dual, PetscGetKokkosExecutionSpace())); 102580c7c76SPierre Jolivet aijkok->transpose_updated = PETSC_FALSE; /* values of the transpose is out-of-date */ 10386a27549SJunchao Zhang aijkok->hermitian_updated = PETSC_FALSE; 1048c3ff71bSJunchao Zhang } 1053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1068c3ff71bSJunchao Zhang } 1078c3ff71bSJunchao Zhang 108076ba34aSJunchao Zhang /* Mark the CSR data on device as modified */ 109d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSeqAIJKokkosModifyDevice(Mat A) 110d71ae5a4SJacob Faibussowitsch { 11186a27549SJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 11286a27549SJunchao Zhang 11386a27549SJunchao Zhang PetscFunctionBegin; 1145f80ce2aSJacob Faibussowitsch PetscCheck(A->factortype == MAT_FACTOR_NONE, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Not supported for factorized matries"); 11586a27549SJunchao Zhang aijkok->a_dual.clear_sync_state(); 11686a27549SJunchao Zhang aijkok->a_dual.modify_device(); 11786a27549SJunchao Zhang aijkok->transpose_updated = PETSC_FALSE; 11886a27549SJunchao Zhang aijkok->hermitian_updated = PETSC_FALSE; 1199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJInvalidateDiagonal(A)); 1209566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)A)); 1213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12286a27549SJunchao Zhang } 12386a27549SJunchao Zhang 124d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJKokkosSyncHost(Mat A) 125d71ae5a4SJacob Faibussowitsch { 126f0cf5187SStefano Zampini Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1274df4a32cSJunchao Zhang auto exec = PetscGetKokkosExecutionSpace(); 128f0cf5187SStefano Zampini 129f0cf5187SStefano Zampini PetscFunctionBegin; 130f0cf5187SStefano Zampini PetscCheckTypeName(A, MATSEQAIJKOKKOS); 13186a27549SJunchao Zhang /* We do not expect one needs factors on host */ 132aaa8cc7dSPierre Jolivet PetscCheck(A->factortype == MAT_FACTOR_NONE, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Can't sync factorized matrix from device to host"); 1335f80ce2aSJacob Faibussowitsch PetscCheck(aijkok, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "Missing AIJKOK"); 134*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncHost(aijkok->a_dual, exec)); 1353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 136f0cf5187SStefano Zampini } 137f0cf5187SStefano Zampini 138d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJGetArray_SeqAIJKokkos(Mat A, PetscScalar *array[]) 139d71ae5a4SJacob Faibussowitsch { 140076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 141f0cf5187SStefano Zampini 142f0cf5187SStefano Zampini PetscFunctionBegin; 1435519a089SJose E. Roman /* aijkok contains valid pointers only if the host's nonzerostate matches with the device's. 1445519a089SJose E. Roman Calling MatSeqAIJSetPreallocation() or MatSetValues() on host, where aijseq->{i,j,a} might be 1455519a089SJose E. Roman reallocated, will lead to stale {i,j,a}_dual in aijkok. In both operations, the hosts's nonzerostate 1465519a089SJose E. Roman must have been updated. The stale aijkok will be rebuilt during MatAssemblyEnd. 1475519a089SJose E. Roman */ 1485519a089SJose E. Roman if (aijkok && A->nonzerostate == aijkok->nonzerostate) { 149*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncHost(aijkok->a_dual, PetscGetKokkosExecutionSpace())); 150076ba34aSJunchao Zhang *array = aijkok->a_dual.view_host().data(); 151076ba34aSJunchao Zhang } else { /* Happens when calling MatSetValues on a newly created matrix */ 152076ba34aSJunchao Zhang *array = static_cast<Mat_SeqAIJ *>(A->data)->a; 153076ba34aSJunchao Zhang } 1543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 155076ba34aSJunchao Zhang } 156076ba34aSJunchao Zhang 157d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJRestoreArray_SeqAIJKokkos(Mat A, PetscScalar *array[]) 158d71ae5a4SJacob Faibussowitsch { 159fabba767SZach Atkins #if !defined(KOKKOS_ENABLE_UNIFIED_MEMORY) 160076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 161fabba767SZach Atkins #endif 162076ba34aSJunchao Zhang 163076ba34aSJunchao Zhang PetscFunctionBegin; 164fabba767SZach Atkins #if !defined(KOKKOS_ENABLE_UNIFIED_MEMORY) 1655519a089SJose E. Roman if (aijkok && A->nonzerostate == aijkok->nonzerostate) aijkok->a_dual.modify_host(); 166fabba767SZach Atkins #endif 1673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168076ba34aSJunchao Zhang } 169076ba34aSJunchao Zhang 170d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJGetArrayRead_SeqAIJKokkos(Mat A, const PetscScalar *array[]) 171d71ae5a4SJacob Faibussowitsch { 172076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 173076ba34aSJunchao Zhang 174076ba34aSJunchao Zhang PetscFunctionBegin; 1755519a089SJose E. Roman if (aijkok && A->nonzerostate == aijkok->nonzerostate) { 176*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncHost(aijkok->a_dual, PetscGetKokkosExecutionSpace())); 177076ba34aSJunchao Zhang *array = aijkok->a_dual.view_host().data(); 1782328674fSJunchao Zhang } else { 1792328674fSJunchao Zhang *array = static_cast<Mat_SeqAIJ *>(A->data)->a; 1802328674fSJunchao Zhang } 1813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 182076ba34aSJunchao Zhang } 183076ba34aSJunchao Zhang 184d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJRestoreArrayRead_SeqAIJKokkos(Mat A, const PetscScalar *array[]) 185d71ae5a4SJacob Faibussowitsch { 186076ba34aSJunchao Zhang PetscFunctionBegin; 187076ba34aSJunchao Zhang *array = NULL; 1883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189076ba34aSJunchao Zhang } 190076ba34aSJunchao Zhang 191d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJGetArrayWrite_SeqAIJKokkos(Mat A, PetscScalar *array[]) 192d71ae5a4SJacob Faibussowitsch { 193076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 194076ba34aSJunchao Zhang 195076ba34aSJunchao Zhang PetscFunctionBegin; 1965519a089SJose E. Roman if (aijkok && A->nonzerostate == aijkok->nonzerostate) { 197076ba34aSJunchao Zhang *array = aijkok->a_dual.view_host().data(); 1982328674fSJunchao Zhang } else { /* Ex. happens with MatZeroEntries on a preallocated but not assembled matrix */ 1992328674fSJunchao Zhang *array = static_cast<Mat_SeqAIJ *>(A->data)->a; 2002328674fSJunchao Zhang } 2013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 202076ba34aSJunchao Zhang } 203076ba34aSJunchao Zhang 204d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJRestoreArrayWrite_SeqAIJKokkos(Mat A, PetscScalar *array[]) 205d71ae5a4SJacob Faibussowitsch { 206076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 207076ba34aSJunchao Zhang 208076ba34aSJunchao Zhang PetscFunctionBegin; 209fabba767SZach Atkins #if !defined(KOKKOS_ENABLE_UNIFIED_MEMORY) 2105519a089SJose E. Roman if (aijkok && A->nonzerostate == aijkok->nonzerostate) { 211076ba34aSJunchao Zhang aijkok->a_dual.clear_sync_state(); 212076ba34aSJunchao Zhang aijkok->a_dual.modify_host(); 2132328674fSJunchao Zhang } 214fabba767SZach Atkins #else 215fabba767SZach Atkins (void)aijkok; 216fabba767SZach Atkins #endif 2173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 218f0cf5187SStefano Zampini } 219f0cf5187SStefano Zampini 220d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJGetCSRAndMemType_SeqAIJKokkos(Mat A, const PetscInt **i, const PetscInt **j, PetscScalar **a, PetscMemType *mtype) 221d71ae5a4SJacob Faibussowitsch { 2227ee59b9bSJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 2237ee59b9bSJunchao Zhang 2247ee59b9bSJunchao Zhang PetscFunctionBegin; 2257ee59b9bSJunchao Zhang PetscCheck(aijkok != NULL, PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "aijkok is NULL"); 2267ee59b9bSJunchao Zhang 2277ee59b9bSJunchao Zhang if (i) *i = aijkok->i_device_data(); 2287ee59b9bSJunchao Zhang if (j) *j = aijkok->j_device_data(); 2297ee59b9bSJunchao Zhang if (a) { 230*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncDevice(aijkok->a_dual, PetscGetKokkosExecutionSpace())); 2317ee59b9bSJunchao Zhang *a = aijkok->a_device_data(); 2327ee59b9bSJunchao Zhang } 2337ee59b9bSJunchao Zhang if (mtype) *mtype = PETSC_MEMTYPE_KOKKOS; 2343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2357ee59b9bSJunchao Zhang } 2367ee59b9bSJunchao Zhang 2370e3ece09SJunchao Zhang /* 2380e3ece09SJunchao Zhang Generate the sparsity pattern of a MatSeqAIJKokkos matrix's transpose on device. 2390e3ece09SJunchao Zhang 2400e3ece09SJunchao Zhang Input Parameter: 2410e3ece09SJunchao Zhang . A - the MATSEQAIJKOKKOS matrix 2420e3ece09SJunchao Zhang 2430e3ece09SJunchao Zhang Output Parameters: 2440e3ece09SJunchao Zhang + perm_d - the permutation array on device, which connects Ta(i) = Aa(perm(i)) 245aaa8cc7dSPierre Jolivet - T_d - the transpose on device, whose value array is allocated but not initialized 2460e3ece09SJunchao Zhang */ 2470e3ece09SJunchao Zhang static PetscErrorCode MatSeqAIJKokkosGenerateTransposeStructure(Mat A, MatRowMapKokkosView &perm_d, KokkosCsrMatrix &T_d) 248d71ae5a4SJacob Faibussowitsch { 2490e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data); 2500e3ece09SJunchao Zhang PetscInt nz = aseq->nz, m = A->rmap->N, n = A->cmap->n; 2510e3ece09SJunchao Zhang const PetscInt *Ai = aseq->i, *Aj = aseq->j; 2527b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost Ti_h(NoInit("Ti"), n + 1); 2530e3ece09SJunchao Zhang MatRowMapType *Ti = Ti_h.data(); 2547b8d4ba6SJunchao Zhang MatColIdxKokkosViewHost Tj_h(NoInit("Tj"), nz); 2557b8d4ba6SJunchao Zhang MatRowMapKokkosViewHost perm_h(NoInit("permutation"), nz); 2560e3ece09SJunchao Zhang PetscInt *Tj = Tj_h.data(); 2570e3ece09SJunchao Zhang PetscInt *perm = perm_h.data(); 2580e3ece09SJunchao Zhang PetscInt *offset; 259152b3e56SJunchao Zhang 260152b3e56SJunchao Zhang PetscFunctionBegin; 2610e3ece09SJunchao Zhang // Populate Ti 2620e3ece09SJunchao Zhang PetscCallCXX(Kokkos::deep_copy(Ti_h, 0)); 2630e3ece09SJunchao Zhang Ti++; 2640e3ece09SJunchao Zhang for (PetscInt i = 0; i < nz; i++) Ti[Aj[i]]++; 2650e3ece09SJunchao Zhang Ti--; 2660e3ece09SJunchao Zhang for (PetscInt i = 0; i < n; i++) Ti[i + 1] += Ti[i]; 2670e3ece09SJunchao Zhang 2680e3ece09SJunchao Zhang // Populate Tj and the permutation array 2690e3ece09SJunchao Zhang PetscCall(PetscCalloc1(n, &offset)); // offset in each T row to fill in its column indices 2700e3ece09SJunchao Zhang for (PetscInt i = 0; i < m; i++) { 2710e3ece09SJunchao Zhang for (PetscInt j = Ai[i]; j < Ai[i + 1]; j++) { // A's (i,j) is T's (j,i) 2720e3ece09SJunchao Zhang PetscInt r = Aj[j]; // row r of T 2730e3ece09SJunchao Zhang PetscInt disp = Ti[r] + offset[r]; 2740e3ece09SJunchao Zhang 2750e3ece09SJunchao Zhang Tj[disp] = i; // col i of T 2760e3ece09SJunchao Zhang perm[disp] = j; 2770e3ece09SJunchao Zhang offset[r]++; 278076ba34aSJunchao Zhang } 2790e3ece09SJunchao Zhang } 2800e3ece09SJunchao Zhang PetscCall(PetscFree(offset)); 2810e3ece09SJunchao Zhang 2820e3ece09SJunchao Zhang // Sort each row of T, along with the permutation array 2830e3ece09SJunchao Zhang for (PetscInt i = 0; i < n; i++) PetscCall(PetscSortIntWithArray(Ti[i + 1] - Ti[i], Tj + Ti[i], perm + Ti[i])); 2840e3ece09SJunchao Zhang 2850e3ece09SJunchao Zhang // Output perm and T on device 2860e3ece09SJunchao Zhang auto Ti_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Ti_h); 2870e3ece09SJunchao Zhang auto Tj_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), Tj_h); 2880e3ece09SJunchao Zhang PetscCallCXX(T_d = KokkosCsrMatrix("csrmatT", n, m, nz, MatScalarKokkosView("Ta", nz), Ti_d, Tj_d)); 2890e3ece09SJunchao Zhang PetscCallCXX(perm_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), perm_h)); 2903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 291152b3e56SJunchao Zhang } 292152b3e56SJunchao Zhang 2930e3ece09SJunchao Zhang // Generate the transpose on device and cache it internally 2940e3ece09SJunchao Zhang // Note: KK transpose_matrix() does not have support symbolic/numeric transpose, so we do it on our own 2950e3ece09SJunchao Zhang PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGenerateTranspose_Private(Mat A, KokkosCsrMatrix *csrmatT) 296d71ae5a4SJacob Faibussowitsch { 2970e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data); 2980e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 2990e3ece09SJunchao Zhang PetscInt nz = aseq->nz, m = A->rmap->N, n = A->cmap->n; 3000e3ece09SJunchao Zhang KokkosCsrMatrix &T = akok->csrmatT; 301152b3e56SJunchao Zhang 302152b3e56SJunchao Zhang PetscFunctionBegin; 3030e3ece09SJunchao Zhang PetscCheck(akok, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "Unexpected NULL (Mat_SeqAIJKokkos*)A->spptr"); 304*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncDevice(akok->a_dual, PetscGetKokkosExecutionSpace())); // Sync A's values since we are going to access them on device 3050e3ece09SJunchao Zhang 3060e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 3070e3ece09SJunchao Zhang 3080e3ece09SJunchao Zhang if (A->symmetric == PETSC_BOOL3_TRUE) { 3090e3ece09SJunchao Zhang *csrmatT = akok->csrmat; 3100e3ece09SJunchao Zhang } else { 3110e3ece09SJunchao Zhang // See if we already have a cached transpose and its value is up to date 3120e3ece09SJunchao Zhang if (T.numRows() == n && T.numCols() == m) { // this indicates csrmatT had been generated before, otherwise T has 0 rows/cols after construction 3130e3ece09SJunchao Zhang if (!akok->transpose_updated) { // if the value is out of date, update the cached version 3140e3ece09SJunchao Zhang const auto &perm = akok->transpose_perm; // get the permutation array 3150e3ece09SJunchao Zhang auto &Ta = T.values; 3160e3ece09SJunchao Zhang 317d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, nz), KOKKOS_LAMBDA(const PetscInt i) { Ta(i) = Aa(perm(i)); })); 318076ba34aSJunchao Zhang } 3190e3ece09SJunchao Zhang } else { // Generate T of size n x m for the first time 3200e3ece09SJunchao Zhang MatRowMapKokkosView perm; 3210e3ece09SJunchao Zhang 3220e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTransposeStructure(A, perm, T)); 3230e3ece09SJunchao Zhang akok->transpose_perm = perm; // cache the perm in this matrix for reuse 324d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, nz), KOKKOS_LAMBDA(const PetscInt i) { T.values(i) = Aa(perm(i)); })); 3250e3ece09SJunchao Zhang } 3260e3ece09SJunchao Zhang akok->transpose_updated = PETSC_TRUE; 3270e3ece09SJunchao Zhang *csrmatT = akok->csrmatT; 3280e3ece09SJunchao Zhang } 3290e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 3300e3ece09SJunchao Zhang } 3310e3ece09SJunchao Zhang 3320e3ece09SJunchao Zhang // Generate the Hermitian on device and cache it internally 3330e3ece09SJunchao Zhang static PetscErrorCode MatSeqAIJKokkosGenerateHermitian_Private(Mat A, KokkosCsrMatrix *csrmatH) 3340e3ece09SJunchao Zhang { 3350e3ece09SJunchao Zhang Mat_SeqAIJ *aseq = static_cast<Mat_SeqAIJ *>(A->data); 3360e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 3370e3ece09SJunchao Zhang PetscInt nz = aseq->nz, m = A->rmap->N, n = A->cmap->n; 3380e3ece09SJunchao Zhang KokkosCsrMatrix &T = akok->csrmatH; 3390e3ece09SJunchao Zhang 3400e3ece09SJunchao Zhang PetscFunctionBegin; 3410e3ece09SJunchao Zhang PetscCheck(akok, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "Unexpected NULL (Mat_SeqAIJKokkos*)A->spptr"); 342*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncDevice(akok->a_dual, PetscGetKokkosExecutionSpace())); // Sync A's values since we are going to access them on device 3430e3ece09SJunchao Zhang 3440e3ece09SJunchao Zhang const auto &Aa = akok->a_dual.view_device(); 3450e3ece09SJunchao Zhang 3460e3ece09SJunchao Zhang if (A->hermitian == PETSC_BOOL3_TRUE) { 3470e3ece09SJunchao Zhang *csrmatH = akok->csrmat; 3480e3ece09SJunchao Zhang } else { 3490e3ece09SJunchao Zhang // See if we already have a cached hermitian and its value is up to date 3500e3ece09SJunchao Zhang if (T.numRows() == n && T.numCols() == m) { // this indicates csrmatT had been generated before, otherwise T has 0 rows/cols after construction 3510e3ece09SJunchao Zhang if (!akok->hermitian_updated) { // if the value is out of date, update the cached version 3520e3ece09SJunchao Zhang const auto &perm = akok->transpose_perm; // get the permutation array 3530e3ece09SJunchao Zhang auto &Ta = T.values; 3540e3ece09SJunchao Zhang 355d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, nz), KOKKOS_LAMBDA(const PetscInt i) { Ta(i) = PetscConj(Aa(perm(i))); })); 3560e3ece09SJunchao Zhang } 3570e3ece09SJunchao Zhang } else { // Generate T of size n x m for the first time 3580e3ece09SJunchao Zhang MatRowMapKokkosView perm; 3590e3ece09SJunchao Zhang 3600e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosGenerateTransposeStructure(A, perm, T)); 3610e3ece09SJunchao Zhang akok->transpose_perm = perm; // cache the perm in this matrix for reuse 362d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, nz), KOKKOS_LAMBDA(const PetscInt i) { T.values(i) = PetscConj(Aa(perm(i))); })); 3630e3ece09SJunchao Zhang } 3640e3ece09SJunchao Zhang akok->hermitian_updated = PETSC_TRUE; 3650e3ece09SJunchao Zhang *csrmatH = akok->csrmatH; 3660e3ece09SJunchao Zhang } 3673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 368152b3e56SJunchao Zhang } 369a587d139SMark 3708c3ff71bSJunchao Zhang /* y = A x */ 371d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMult_SeqAIJKokkos(Mat A, Vec xx, Vec yy) 372d71ae5a4SJacob Faibussowitsch { 3738c3ff71bSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 374152b3e56SJunchao Zhang ConstPetscScalarKokkosView xv; 375152b3e56SJunchao Zhang PetscScalarKokkosView yv; 3768c3ff71bSJunchao Zhang 3778c3ff71bSJunchao Zhang PetscFunctionBegin; 3789566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 3799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 3809566063dSJacob Faibussowitsch PetscCall(VecGetKokkosView(xx, &xv)); 3819566063dSJacob Faibussowitsch PetscCall(VecGetKokkosViewWrite(yy, &yv)); 3828c3ff71bSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 383d326c3f1SJunchao Zhang PetscCallCXX(KokkosSparse::spmv(PetscGetKokkosExecutionSpace(), "N", 1.0 /*alpha*/, aijkok->csrmat, xv, 0.0 /*beta*/, yv)); /* y = alpha A x + beta y */ 3849566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosView(xx, &xv)); 3859566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosViewWrite(yy, &yv)); 386076ba34aSJunchao Zhang /* 2.0*nnz - numRows seems more accurate here but assumes there are no zero-rows. So a little sloppy here. */ 3879566063dSJacob Faibussowitsch PetscCall(PetscLogGpuFlops(2.0 * aijkok->csrmat.nnz())); 3889566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3908c3ff71bSJunchao Zhang } 3918c3ff71bSJunchao Zhang 3928c3ff71bSJunchao Zhang /* y = A^T x */ 393d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultTranspose_SeqAIJKokkos(Mat A, Vec xx, Vec yy) 394d71ae5a4SJacob Faibussowitsch { 3958c3ff71bSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 396152b3e56SJunchao Zhang const char *mode; 397152b3e56SJunchao Zhang ConstPetscScalarKokkosView xv; 398152b3e56SJunchao Zhang PetscScalarKokkosView yv; 3990e3ece09SJunchao Zhang KokkosCsrMatrix csrmat; 4008c3ff71bSJunchao Zhang 4018c3ff71bSJunchao Zhang PetscFunctionBegin; 4029566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 4039566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 4049566063dSJacob Faibussowitsch PetscCall(VecGetKokkosView(xx, &xv)); 4059566063dSJacob Faibussowitsch PetscCall(VecGetKokkosViewWrite(yy, &yv)); 406152b3e56SJunchao Zhang if (A->form_explicit_transpose) { 4079566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(A, &csrmat)); 408152b3e56SJunchao Zhang mode = "N"; 409152b3e56SJunchao Zhang } else { 410076ba34aSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 4110e3ece09SJunchao Zhang csrmat = aijkok->csrmat; 412152b3e56SJunchao Zhang mode = "T"; 413152b3e56SJunchao Zhang } 414d326c3f1SJunchao Zhang PetscCallCXX(KokkosSparse::spmv(PetscGetKokkosExecutionSpace(), mode, 1.0 /*alpha*/, csrmat, xv, 0.0 /*beta*/, yv)); /* y = alpha A^T x + beta y */ 4159566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosView(xx, &xv)); 4169566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosViewWrite(yy, &yv)); 4170e3ece09SJunchao Zhang PetscCall(PetscLogGpuFlops(2.0 * csrmat.nnz())); 4189566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 4193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4208c3ff71bSJunchao Zhang } 4218c3ff71bSJunchao Zhang 4228c3ff71bSJunchao Zhang /* y = A^H x */ 423d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultHermitianTranspose_SeqAIJKokkos(Mat A, Vec xx, Vec yy) 424d71ae5a4SJacob Faibussowitsch { 4258c3ff71bSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 426152b3e56SJunchao Zhang const char *mode; 427152b3e56SJunchao Zhang ConstPetscScalarKokkosView xv; 428152b3e56SJunchao Zhang PetscScalarKokkosView yv; 4290e3ece09SJunchao Zhang KokkosCsrMatrix csrmat; 4308c3ff71bSJunchao Zhang 4318c3ff71bSJunchao Zhang PetscFunctionBegin; 4329566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 4339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 4349566063dSJacob Faibussowitsch PetscCall(VecGetKokkosView(xx, &xv)); 4359566063dSJacob Faibussowitsch PetscCall(VecGetKokkosViewWrite(yy, &yv)); 436152b3e56SJunchao Zhang if (A->form_explicit_transpose) { 4379566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateHermitian_Private(A, &csrmat)); 438152b3e56SJunchao Zhang mode = "N"; 439152b3e56SJunchao Zhang } else { 440076ba34aSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 4410e3ece09SJunchao Zhang csrmat = aijkok->csrmat; 442152b3e56SJunchao Zhang mode = "C"; 443152b3e56SJunchao Zhang } 444d326c3f1SJunchao Zhang PetscCallCXX(KokkosSparse::spmv(PetscGetKokkosExecutionSpace(), mode, 1.0 /*alpha*/, csrmat, xv, 0.0 /*beta*/, yv)); /* y = alpha A^H x + beta y */ 4459566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosView(xx, &xv)); 4469566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosViewWrite(yy, &yv)); 4470e3ece09SJunchao Zhang PetscCall(PetscLogGpuFlops(2.0 * csrmat.nnz())); 4489566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 4493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4508c3ff71bSJunchao Zhang } 4518c3ff71bSJunchao Zhang 4528c3ff71bSJunchao Zhang /* z = A x + y */ 453d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultAdd_SeqAIJKokkos(Mat A, Vec xx, Vec yy, Vec zz) 454d71ae5a4SJacob Faibussowitsch { 4558c3ff71bSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 45692896123SJunchao Zhang ConstPetscScalarKokkosView xv; 457152b3e56SJunchao Zhang PetscScalarKokkosView zv; 4588c3ff71bSJunchao Zhang 4598c3ff71bSJunchao Zhang PetscFunctionBegin; 4609566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 4619566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 46292896123SJunchao Zhang if (zz != yy) PetscCall(VecCopy(yy, zz)); // depending on yy's sync flags, zz might get its latest data on host 4639566063dSJacob Faibussowitsch PetscCall(VecGetKokkosView(xx, &xv)); 46492896123SJunchao Zhang PetscCall(VecGetKokkosView(zz, &zv)); // do after VecCopy(yy, zz) to get the latest data on device 4658c3ff71bSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 466d326c3f1SJunchao Zhang PetscCallCXX(KokkosSparse::spmv(PetscGetKokkosExecutionSpace(), "N", 1.0 /*alpha*/, aijkok->csrmat, xv, 1.0 /*beta*/, zv)); /* z = alpha A x + beta z */ 4679566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosView(xx, &xv)); 46892896123SJunchao Zhang PetscCall(VecRestoreKokkosView(zz, &zv)); 4699566063dSJacob Faibussowitsch PetscCall(PetscLogGpuFlops(2.0 * aijkok->csrmat.nnz())); 4709566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 4713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 4728c3ff71bSJunchao Zhang } 4738c3ff71bSJunchao Zhang 4748c3ff71bSJunchao Zhang /* z = A^T x + y */ 475d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultTransposeAdd_SeqAIJKokkos(Mat A, Vec xx, Vec yy, Vec zz) 476d71ae5a4SJacob Faibussowitsch { 4778c3ff71bSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 478152b3e56SJunchao Zhang const char *mode; 47992896123SJunchao Zhang ConstPetscScalarKokkosView xv; 480152b3e56SJunchao Zhang PetscScalarKokkosView zv; 4810e3ece09SJunchao Zhang KokkosCsrMatrix csrmat; 4828c3ff71bSJunchao Zhang 4838c3ff71bSJunchao Zhang PetscFunctionBegin; 4849566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 4859566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 48692896123SJunchao Zhang if (zz != yy) PetscCall(VecCopy(yy, zz)); 4879566063dSJacob Faibussowitsch PetscCall(VecGetKokkosView(xx, &xv)); 48892896123SJunchao Zhang PetscCall(VecGetKokkosView(zz, &zv)); 489152b3e56SJunchao Zhang if (A->form_explicit_transpose) { 4909566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(A, &csrmat)); 491152b3e56SJunchao Zhang mode = "N"; 492152b3e56SJunchao Zhang } else { 493076ba34aSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 4940e3ece09SJunchao Zhang csrmat = aijkok->csrmat; 495152b3e56SJunchao Zhang mode = "T"; 496152b3e56SJunchao Zhang } 497d326c3f1SJunchao Zhang PetscCallCXX(KokkosSparse::spmv(PetscGetKokkosExecutionSpace(), mode, 1.0 /*alpha*/, csrmat, xv, 1.0 /*beta*/, zv)); /* z = alpha A^T x + beta z */ 4989566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosView(xx, &xv)); 49992896123SJunchao Zhang PetscCall(VecRestoreKokkosView(zz, &zv)); 5000e3ece09SJunchao Zhang PetscCall(PetscLogGpuFlops(2.0 * csrmat.nnz())); 5019566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 5023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5038c3ff71bSJunchao Zhang } 5048c3ff71bSJunchao Zhang 5058c3ff71bSJunchao Zhang /* z = A^H x + y */ 506d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatMultHermitianTransposeAdd_SeqAIJKokkos(Mat A, Vec xx, Vec yy, Vec zz) 507d71ae5a4SJacob Faibussowitsch { 5088c3ff71bSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 509152b3e56SJunchao Zhang const char *mode; 51092896123SJunchao Zhang ConstPetscScalarKokkosView xv; 511152b3e56SJunchao Zhang PetscScalarKokkosView zv; 5120e3ece09SJunchao Zhang KokkosCsrMatrix csrmat; 5138c3ff71bSJunchao Zhang 5148c3ff71bSJunchao Zhang PetscFunctionBegin; 5159566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 5169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 51792896123SJunchao Zhang if (zz != yy) PetscCall(VecCopy(yy, zz)); 5189566063dSJacob Faibussowitsch PetscCall(VecGetKokkosView(xx, &xv)); 51992896123SJunchao Zhang PetscCall(VecGetKokkosView(zz, &zv)); 520152b3e56SJunchao Zhang if (A->form_explicit_transpose) { 5219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateHermitian_Private(A, &csrmat)); 522152b3e56SJunchao Zhang mode = "N"; 523152b3e56SJunchao Zhang } else { 524076ba34aSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 5250e3ece09SJunchao Zhang csrmat = aijkok->csrmat; 526152b3e56SJunchao Zhang mode = "C"; 527152b3e56SJunchao Zhang } 528d326c3f1SJunchao Zhang PetscCallCXX(KokkosSparse::spmv(PetscGetKokkosExecutionSpace(), mode, 1.0 /*alpha*/, csrmat, xv, 1.0 /*beta*/, zv)); /* z = alpha A^H x + beta z */ 5299566063dSJacob Faibussowitsch PetscCall(VecRestoreKokkosView(xx, &xv)); 53092896123SJunchao Zhang PetscCall(VecRestoreKokkosView(zz, &zv)); 5310e3ece09SJunchao Zhang PetscCall(PetscLogGpuFlops(2.0 * csrmat.nnz())); 5329566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 5333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 534152b3e56SJunchao Zhang } 535152b3e56SJunchao Zhang 53666976f2fSJacob Faibussowitsch static PetscErrorCode MatSetOption_SeqAIJKokkos(Mat A, MatOption op, PetscBool flg) 537d71ae5a4SJacob Faibussowitsch { 538152b3e56SJunchao Zhang Mat_SeqAIJKokkos *aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 539152b3e56SJunchao Zhang 540152b3e56SJunchao Zhang PetscFunctionBegin; 541152b3e56SJunchao Zhang switch (op) { 542152b3e56SJunchao Zhang case MAT_FORM_EXPLICIT_TRANSPOSE: 543152b3e56SJunchao Zhang /* need to destroy the transpose matrix if present to prevent from logic errors if flg is set to true later */ 5449566063dSJacob Faibussowitsch if (A->form_explicit_transpose && !flg && aijkok) PetscCall(aijkok->DestroyMatTranspose()); 545152b3e56SJunchao Zhang A->form_explicit_transpose = flg; 546152b3e56SJunchao Zhang break; 547d71ae5a4SJacob Faibussowitsch default: 548d71ae5a4SJacob Faibussowitsch PetscCall(MatSetOption_SeqAIJ(A, op, flg)); 549d71ae5a4SJacob Faibussowitsch break; 550152b3e56SJunchao Zhang } 5513ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5528c3ff71bSJunchao Zhang } 5538c3ff71bSJunchao Zhang 554076ba34aSJunchao Zhang /* Depending on reuse, either build a new mat, or use the existing mat */ 555d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJKokkos(Mat A, MatType mtype, MatReuse reuse, Mat *newmat) 556d71ae5a4SJacob Faibussowitsch { 557076ba34aSJunchao Zhang Mat_SeqAIJ *aseq; 5588c3ff71bSJunchao Zhang 5598c3ff71bSJunchao Zhang PetscFunctionBegin; 5609566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 561076ba34aSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { /* Build a brand new mat */ 5629566063dSJacob Faibussowitsch PetscCall(MatDuplicate(A, MAT_COPY_VALUES, newmat)); /* the returned newmat is a SeqAIJKokkos */ 5638c3ff71bSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { /* Reuse the mat created before */ 5649566063dSJacob Faibussowitsch PetscCall(MatCopy(A, *newmat, SAME_NONZERO_PATTERN)); /* newmat is already a SeqAIJKokkos */ 565076ba34aSJunchao Zhang } else if (reuse == MAT_INPLACE_MATRIX) { /* newmat is A */ 5665f80ce2aSJacob Faibussowitsch PetscCheck(A == *newmat, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "A != *newmat with MAT_INPLACE_MATRIX"); 5679566063dSJacob Faibussowitsch PetscCall(PetscFree(A->defaultvectype)); 5689566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &A->defaultvectype)); /* Allocate and copy the string */ 5699566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)A, MATSEQAIJKOKKOS)); 5709566063dSJacob Faibussowitsch PetscCall(MatSetOps_SeqAIJKokkos(A)); 571076ba34aSJunchao Zhang aseq = static_cast<Mat_SeqAIJ *>(A->data); 572394ed5ebSJunchao Zhang if (A->assembled) { /* Copy i, j (but not values) to device for an assembled matrix if not yet */ 5735f80ce2aSJacob Faibussowitsch PetscCheck(!A->spptr, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "Expect NULL (Mat_SeqAIJKokkos*)A->spptr"); 574f4747e26SJunchao Zhang A->spptr = new Mat_SeqAIJKokkos(A->rmap->n, A->cmap->n, aseq, A->nonzerostate, PETSC_FALSE); 5758c3ff71bSJunchao Zhang } 576076ba34aSJunchao Zhang } 5773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5788c3ff71bSJunchao Zhang } 5798c3ff71bSJunchao Zhang 580076ba34aSJunchao Zhang /* MatDuplicate always creates a new matrix. MatDuplicate can be called either on an assembled matrix or 581076ba34aSJunchao Zhang an unassembled matrix, even though MAT_COPY_VALUES is not allowed for unassembled matrix. 582076ba34aSJunchao Zhang */ 583d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_SeqAIJKokkos(Mat A, MatDuplicateOption dupOption, Mat *B) 584d71ae5a4SJacob Faibussowitsch { 585076ba34aSJunchao Zhang Mat_SeqAIJ *bseq; 586076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr), *bkok; 587076ba34aSJunchao Zhang Mat mat; 5888c3ff71bSJunchao Zhang 5898c3ff71bSJunchao Zhang PetscFunctionBegin; 590076ba34aSJunchao Zhang /* Do not copy values on host as A's latest values might be on device. We don't want to do sync blindly */ 5919566063dSJacob Faibussowitsch PetscCall(MatDuplicate_SeqAIJ(A, MAT_DO_NOT_COPY_VALUES, B)); 592076ba34aSJunchao Zhang mat = *B; 593f4747e26SJunchao Zhang if (A->assembled) { 594076ba34aSJunchao Zhang bseq = static_cast<Mat_SeqAIJ *>(mat->data); 595f4747e26SJunchao Zhang bkok = new Mat_SeqAIJKokkos(mat->rmap->n, mat->cmap->n, bseq, mat->nonzerostate, PETSC_FALSE); 596076ba34aSJunchao Zhang bkok->a_dual.clear_sync_state(); /* Clear B's sync state as it will be decided below */ 597076ba34aSJunchao Zhang /* Now copy values to B if needed */ 598076ba34aSJunchao Zhang if (dupOption == MAT_COPY_VALUES) { 599076ba34aSJunchao Zhang if (akok->a_dual.need_sync_device()) { 600076ba34aSJunchao Zhang Kokkos::deep_copy(bkok->a_dual.view_host(), akok->a_dual.view_host()); 601076ba34aSJunchao Zhang bkok->a_dual.modify_host(); 602076ba34aSJunchao Zhang } else { /* If device has the latest data, we only copy data on device */ 603076ba34aSJunchao Zhang Kokkos::deep_copy(bkok->a_dual.view_device(), akok->a_dual.view_device()); 604076ba34aSJunchao Zhang bkok->a_dual.modify_device(); 605076ba34aSJunchao Zhang } 606076ba34aSJunchao Zhang } else { /* MAT_DO_NOT_COPY_VALUES or MAT_SHARE_NONZERO_PATTERN. B's values should be zeroed */ 607076ba34aSJunchao Zhang /* B's values on host should be already zeroed by MatDuplicate_SeqAIJ() */ 608076ba34aSJunchao Zhang bkok->a_dual.modify_host(); 609076ba34aSJunchao Zhang } 610076ba34aSJunchao Zhang mat->spptr = bkok; 611076ba34aSJunchao Zhang } 612076ba34aSJunchao Zhang 6139566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->defaultvectype)); 6149566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(VECKOKKOS, &mat->defaultvectype)); /* Allocate and copy the string */ 6159566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, MATSEQAIJKOKKOS)); 6169566063dSJacob Faibussowitsch PetscCall(MatSetOps_SeqAIJKokkos(mat)); 6173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6188c3ff71bSJunchao Zhang } 6198c3ff71bSJunchao Zhang 620d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatTranspose_SeqAIJKokkos(Mat A, MatReuse reuse, Mat *B) 621d71ae5a4SJacob Faibussowitsch { 6220ecb592aSJunchao Zhang Mat At; 6230e3ece09SJunchao Zhang KokkosCsrMatrix internT; 6240ecb592aSJunchao Zhang Mat_SeqAIJKokkos *atkok, *bkok; 6250ecb592aSJunchao Zhang 6260ecb592aSJunchao Zhang PetscFunctionBegin; 6277fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *B)); 6289566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(A, &internT)); /* Generate a transpose internally */ 6290ecb592aSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 630ff751488SJunchao Zhang /* Deep copy internT, as we want to isolate the internal transpose */ 6310e3ece09SJunchao Zhang PetscCallCXX(atkok = new Mat_SeqAIJKokkos(KokkosCsrMatrix("csrmat", internT))); 6329566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJKokkosWithCSRMatrix(PetscObjectComm((PetscObject)A), atkok, &At)); 6330ecb592aSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) *B = At; 6349566063dSJacob Faibussowitsch else PetscCall(MatHeaderReplace(A, &At)); /* Replace A with At inplace */ 6350ecb592aSJunchao Zhang } else { /* MAT_REUSE_MATRIX, just need to copy values to B on device */ 6360ecb592aSJunchao Zhang if ((*B)->assembled) { 6370ecb592aSJunchao Zhang bkok = static_cast<Mat_SeqAIJKokkos *>((*B)->spptr); 6380e3ece09SJunchao Zhang PetscCallCXX(Kokkos::deep_copy(bkok->a_dual.view_device(), internT.values)); 6399566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(*B)); 6400ecb592aSJunchao Zhang } else if ((*B)->preallocated) { /* It is ok for B to be only preallocated, as needed in MatTranspose_MPIAIJ */ 6410ecb592aSJunchao Zhang Mat_SeqAIJ *bseq = static_cast<Mat_SeqAIJ *>((*B)->data); 6420e3ece09SJunchao Zhang MatScalarKokkosViewHost a_h(bseq->a, internT.nnz()); /* bseq->nz = 0 if unassembled */ 6430e3ece09SJunchao Zhang MatColIdxKokkosViewHost j_h(bseq->j, internT.nnz()); 6440e3ece09SJunchao Zhang PetscCallCXX(Kokkos::deep_copy(a_h, internT.values)); 6450e3ece09SJunchao Zhang PetscCallCXX(Kokkos::deep_copy(j_h, internT.graph.entries)); 6460ecb592aSJunchao Zhang } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONGSTATE, "B must be assembled or preallocated"); 6470ecb592aSJunchao Zhang } 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6490ecb592aSJunchao Zhang } 6500ecb592aSJunchao Zhang 651d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDestroy_SeqAIJKokkos(Mat A) 652d71ae5a4SJacob Faibussowitsch { 65386a27549SJunchao Zhang Mat_SeqAIJKokkos *aijkok; 6548c3ff71bSJunchao Zhang 6558c3ff71bSJunchao Zhang PetscFunctionBegin; 65686a27549SJunchao Zhang if (A->factortype == MAT_FACTOR_NONE) { 65786a27549SJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 6588c3ff71bSJunchao Zhang delete aijkok; 65986a27549SJunchao Zhang } else { 66086a27549SJunchao Zhang delete static_cast<Mat_SeqAIJKokkosTriFactors *>(A->spptr); 66186a27549SJunchao Zhang } 662cbc6b225SStefano Zampini A->spptr = NULL; 6639566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatFactorGetSolverType_C", NULL)); 6649566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", NULL)); 6659566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", NULL)); 66657761e9aSJunchao Zhang #if defined(PETSC_HAVE_HYPRE) 66757761e9aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqaijkokkos_hypre_C", NULL)); 66857761e9aSJunchao Zhang #endif 6699566063dSJacob Faibussowitsch PetscCall(MatDestroy_SeqAIJ(A)); 6703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6718c3ff71bSJunchao Zhang } 6728c3ff71bSJunchao Zhang 6733f3ba80aSJunchao Zhang /*MC 6743f3ba80aSJunchao Zhang MATSEQAIJKOKKOS - MATAIJKOKKOS = "(seq)aijkokkos" - A matrix type to be used for sparse matrices with Kokkos 6753f3ba80aSJunchao Zhang 67615229ffcSPierre Jolivet A matrix type using Kokkos-Kernels CrsMatrix type for portability across different device types 6773f3ba80aSJunchao Zhang 6782ef1f0ffSBarry Smith Options Database Key: 67911a5261eSBarry Smith . -mat_type aijkokkos - sets the matrix type to `MATSEQAIJKOKKOS` during a call to `MatSetFromOptions()` 6803f3ba80aSJunchao Zhang 6813f3ba80aSJunchao Zhang Level: beginner 6823f3ba80aSJunchao Zhang 6831cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `MatCreateSeqAIJKokkos()`, `MATMPIAIJKOKKOS` 6843f3ba80aSJunchao Zhang M*/ 685d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJKokkos(Mat A) 686d71ae5a4SJacob Faibussowitsch { 68786a27549SJunchao Zhang PetscFunctionBegin; 6889566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 6899566063dSJacob Faibussowitsch PetscCall(MatCreate_SeqAIJ(A)); 6909566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqAIJ_SeqAIJKokkos(A, MATSEQAIJKOKKOS, MAT_INPLACE_MATRIX, &A)); 6913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 69286a27549SJunchao Zhang } 69386a27549SJunchao Zhang 694076ba34aSJunchao Zhang /* Merge A, B into a matrix C. A is put before B. C's size would be A->rmap->n by (A->cmap->n + B->cmap->n) */ 695d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqAIJKokkosMergeMats(Mat A, Mat B, MatReuse reuse, Mat *C) 696d71ae5a4SJacob Faibussowitsch { 697076ba34aSJunchao Zhang Mat_SeqAIJ *a, *b; 698076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok, *bkok, *ckok; 699076ba34aSJunchao Zhang MatScalarKokkosView aa, ba, ca; 700076ba34aSJunchao Zhang MatRowMapKokkosView ai, bi, ci; 701076ba34aSJunchao Zhang MatColIdxKokkosView aj, bj, cj; 702076ba34aSJunchao Zhang PetscInt m, n, nnz, aN; 703a3f881fbSStefano Zampini 704a3f881fbSStefano Zampini PetscFunctionBegin; 705076ba34aSJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 706076ba34aSJunchao Zhang PetscValidHeaderSpecific(B, MAT_CLASSID, 2); 7074f572ea9SToby Isaac PetscAssertPointer(C, 4); 708076ba34aSJunchao Zhang PetscCheckTypeName(A, MATSEQAIJKOKKOS); 709076ba34aSJunchao Zhang PetscCheckTypeName(B, MATSEQAIJKOKKOS); 7105f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == B->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Invalid number or rows %" PetscInt_FMT " != %" PetscInt_FMT, A->rmap->n, B->rmap->n); 7115f80ce2aSJacob Faibussowitsch PetscCheck(reuse != MAT_INPLACE_MATRIX, PETSC_COMM_SELF, PETSC_ERR_SUP, "MAT_INPLACE_MATRIX not supported"); 712076ba34aSJunchao Zhang 7139566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 7149566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(B)); 715076ba34aSJunchao Zhang a = static_cast<Mat_SeqAIJ *>(A->data); 716076ba34aSJunchao Zhang b = static_cast<Mat_SeqAIJ *>(B->data); 717076ba34aSJunchao Zhang akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 718076ba34aSJunchao Zhang bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 719076ba34aSJunchao Zhang aa = akok->a_dual.view_device(); 720076ba34aSJunchao Zhang ai = akok->i_dual.view_device(); 721076ba34aSJunchao Zhang ba = bkok->a_dual.view_device(); 722076ba34aSJunchao Zhang bi = bkok->i_dual.view_device(); 723076ba34aSJunchao Zhang m = A->rmap->n; /* M, N and nnz of C */ 724076ba34aSJunchao Zhang n = A->cmap->n + B->cmap->n; 725076ba34aSJunchao Zhang nnz = a->nz + b->nz; 726076ba34aSJunchao Zhang aN = A->cmap->n; /* N of A */ 727076ba34aSJunchao Zhang if (reuse == MAT_INITIAL_MATRIX) { 728076ba34aSJunchao Zhang aj = akok->j_dual.view_device(); 729076ba34aSJunchao Zhang bj = bkok->j_dual.view_device(); 730076ba34aSJunchao Zhang auto ca_dual = MatScalarKokkosDualView("a", aa.extent(0) + ba.extent(0)); 731076ba34aSJunchao Zhang auto ci_dual = MatRowMapKokkosDualView("i", ai.extent(0)); 732076ba34aSJunchao Zhang auto cj_dual = MatColIdxKokkosDualView("j", aj.extent(0) + bj.extent(0)); 733076ba34aSJunchao Zhang ca = ca_dual.view_device(); 734076ba34aSJunchao Zhang ci = ci_dual.view_device(); 735076ba34aSJunchao Zhang cj = cj_dual.view_device(); 736076ba34aSJunchao Zhang 737076ba34aSJunchao Zhang /* Concatenate A and B in parallel using Kokkos hierarchical parallelism */ 7389371c9d4SSatish Balay Kokkos::parallel_for( 739d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), m, Kokkos::AUTO()), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 740076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 741076ba34aSJunchao Zhang PetscInt coffset = ai(i) + bi(i), alen = ai(i + 1) - ai(i), blen = bi(i + 1) - bi(i); 742076ba34aSJunchao Zhang 743076ba34aSJunchao Zhang Kokkos::single(Kokkos::PerTeam(t), [=]() { /* this side effect only happens once per whole team */ 744076ba34aSJunchao Zhang ci(i) = coffset; 745076ba34aSJunchao Zhang if (i == m - 1) ci(m) = ai(m) + bi(m); 746076ba34aSJunchao Zhang }); 747076ba34aSJunchao Zhang 748076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, alen + blen), [&](PetscInt k) { 749076ba34aSJunchao Zhang if (k < alen) { 750076ba34aSJunchao Zhang ca(coffset + k) = aa(ai(i) + k); 751076ba34aSJunchao Zhang cj(coffset + k) = aj(ai(i) + k); 752076ba34aSJunchao Zhang } else { 753076ba34aSJunchao Zhang ca(coffset + k) = ba(bi(i) + k - alen); 754076ba34aSJunchao Zhang cj(coffset + k) = bj(bi(i) + k - alen) + aN; /* Entries in B get new column indices in C */ 755076ba34aSJunchao Zhang } 756076ba34aSJunchao Zhang }); 757076ba34aSJunchao Zhang }); 758076ba34aSJunchao Zhang ca_dual.modify_device(); 759076ba34aSJunchao Zhang ci_dual.modify_device(); 760076ba34aSJunchao Zhang cj_dual.modify_device(); 7619566063dSJacob Faibussowitsch PetscCallCXX(ckok = new Mat_SeqAIJKokkos(m, n, nnz, ci_dual, cj_dual, ca_dual)); 7629566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF, ckok, C)); 763076ba34aSJunchao Zhang } else if (reuse == MAT_REUSE_MATRIX) { 764076ba34aSJunchao Zhang PetscValidHeaderSpecific(*C, MAT_CLASSID, 4); 765076ba34aSJunchao Zhang PetscCheckTypeName(*C, MATSEQAIJKOKKOS); 766076ba34aSJunchao Zhang ckok = static_cast<Mat_SeqAIJKokkos *>((*C)->spptr); 767076ba34aSJunchao Zhang ca = ckok->a_dual.view_device(); 768076ba34aSJunchao Zhang ci = ckok->i_dual.view_device(); 769076ba34aSJunchao Zhang 7709371c9d4SSatish Balay Kokkos::parallel_for( 771d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), m, Kokkos::AUTO()), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 772076ba34aSJunchao Zhang PetscInt i = t.league_rank(); /* row i */ 773076ba34aSJunchao Zhang PetscInt alen = ai(i + 1) - ai(i), blen = bi(i + 1) - bi(i); 774076ba34aSJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, alen + blen), [&](PetscInt k) { 775076ba34aSJunchao Zhang if (k < alen) ca(ci(i) + k) = aa(ai(i) + k); 776076ba34aSJunchao Zhang else ca(ci(i) + k) = ba(bi(i) + k - alen); 777076ba34aSJunchao Zhang }); 778076ba34aSJunchao Zhang }); 7799566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(*C)); 780076ba34aSJunchao Zhang } 7813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 782076ba34aSJunchao Zhang } 783076ba34aSJunchao Zhang 784d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductDataDestroy_SeqAIJKokkos(void *pdata) 785d71ae5a4SJacob Faibussowitsch { 786076ba34aSJunchao Zhang PetscFunctionBegin; 787076ba34aSJunchao Zhang delete static_cast<MatProductData_SeqAIJKokkos *>(pdata); 7883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 789a3f881fbSStefano Zampini } 790a3f881fbSStefano Zampini 791d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_SeqAIJKokkos_SeqAIJKokkos(Mat C) 792d71ae5a4SJacob Faibussowitsch { 793a3f881fbSStefano Zampini Mat_Product *product = C->product; 794a3f881fbSStefano Zampini Mat A, B; 795076ba34aSJunchao Zhang bool transA, transB; /* use bool, since KK needs this type */ 796a3f881fbSStefano Zampini Mat_SeqAIJKokkos *akok, *bkok, *ckok; 797a3f881fbSStefano Zampini Mat_SeqAIJ *c; 798076ba34aSJunchao Zhang MatProductData_SeqAIJKokkos *pdata; 7990e3ece09SJunchao Zhang KokkosCsrMatrix csrmatA, csrmatB; 800a3f881fbSStefano Zampini 801a3f881fbSStefano Zampini PetscFunctionBegin; 802a3f881fbSStefano Zampini MatCheckProduct(C, 1); 8035f80ce2aSJacob Faibussowitsch PetscCheck(C->product->data, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Product data empty"); 804076ba34aSJunchao Zhang pdata = static_cast<MatProductData_SeqAIJKokkos *>(C->product->data); 805076ba34aSJunchao Zhang 8060e3ece09SJunchao Zhang // See if numeric has already been done in symbolic (e.g., user calls MatMatMult(A,B,MAT_INITIAL_MATRIX,..,C)). 8070e3ece09SJunchao Zhang // If yes, skip the numeric, but reset the flag so that next time when user calls MatMatMult(E,F,MAT_REUSE_MATRIX,..,C), 8080e3ece09SJunchao Zhang // we still do numeric. 8090e3ece09SJunchao Zhang if (pdata->reusesym) { // numeric reuses results from symbolic 8100e3ece09SJunchao Zhang pdata->reusesym = PETSC_FALSE; 8113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 812076ba34aSJunchao Zhang } 813076ba34aSJunchao Zhang 814076ba34aSJunchao Zhang switch (product->type) { 8159371c9d4SSatish Balay case MATPRODUCT_AB: 8169371c9d4SSatish Balay transA = false; 8179371c9d4SSatish Balay transB = false; 8189371c9d4SSatish Balay break; 8199371c9d4SSatish Balay case MATPRODUCT_AtB: 8209371c9d4SSatish Balay transA = true; 8219371c9d4SSatish Balay transB = false; 8229371c9d4SSatish Balay break; 8239371c9d4SSatish Balay case MATPRODUCT_ABt: 8249371c9d4SSatish Balay transA = false; 8259371c9d4SSatish Balay transB = true; 8269371c9d4SSatish Balay break; 827d71ae5a4SJacob Faibussowitsch default: 828d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Unsupported product type %s", MatProductTypes[product->type]); 829076ba34aSJunchao Zhang } 830076ba34aSJunchao Zhang 831a3f881fbSStefano Zampini A = product->A; 832a3f881fbSStefano Zampini B = product->B; 8339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 8349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(B)); 835a3f881fbSStefano Zampini akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 836a3f881fbSStefano Zampini bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 837a3f881fbSStefano Zampini ckok = static_cast<Mat_SeqAIJKokkos *>(C->spptr); 838076ba34aSJunchao Zhang 8395f80ce2aSJacob Faibussowitsch PetscCheck(ckok, PetscObjectComm((PetscObject)C), PETSC_ERR_PLIB, "Device data structure spptr is empty"); 840076ba34aSJunchao Zhang 8410e3ece09SJunchao Zhang csrmatA = akok->csrmat; 8420e3ece09SJunchao Zhang csrmatB = bkok->csrmat; 843076ba34aSJunchao Zhang 844076ba34aSJunchao Zhang /* TODO: Once KK spgemm implements transpose, we can get rid of the explicit transpose here */ 845076ba34aSJunchao Zhang if (transA) { 8469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(A, &csrmatA)); 847076ba34aSJunchao Zhang transA = false; 848a3f881fbSStefano Zampini } 849a3f881fbSStefano Zampini 850076ba34aSJunchao Zhang if (transB) { 8519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(B, &csrmatB)); 852076ba34aSJunchao Zhang transB = false; 853076ba34aSJunchao Zhang } 8549566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 8550e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(pdata->kh, csrmatA, transA, csrmatB, transB, ckok->csrmat)); 8560e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 857866eb059SJunchao Zhang auto spgemmHandle = pdata->kh.get_spgemm_handle(); 858866eb059SJunchao Zhang if (spgemmHandle->get_sort_option() != 1) PetscCallCXX(sort_crs_matrix(ckok->csrmat)); /* without sort, mat_tests-ex62_14_seqaijkokkos fails */ 859e944a159SJunchao Zhang #endif 860866eb059SJunchao Zhang 8619566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 8629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(C)); 863a3f881fbSStefano Zampini /* shorter version of MatAssemblyEnd_SeqAIJ */ 864a3f881fbSStefano Zampini c = (Mat_SeqAIJ *)C->data; 8659566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Matrix size: %" PetscInt_FMT " X %" PetscInt_FMT "; storage space: 0 unneeded,%" PetscInt_FMT " used\n", C->rmap->n, C->cmap->n, c->nz)); 8669566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Number of mallocs during MatSetValues() is 0\n")); 8679566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Maximum nonzeros in any row is %" PetscInt_FMT "\n", c->rmax)); 868a3f881fbSStefano Zampini c->reallocs = 0; 869076ba34aSJunchao Zhang C->info.mallocs = 0; 870a3f881fbSStefano Zampini C->info.nz_unneeded = 0; 871a3f881fbSStefano Zampini C->assembled = C->was_assembled = PETSC_TRUE; 872a3f881fbSStefano Zampini C->num_ass++; 8733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 874a3f881fbSStefano Zampini } 875a3f881fbSStefano Zampini 876d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_SeqAIJKokkos_SeqAIJKokkos(Mat C) 877d71ae5a4SJacob Faibussowitsch { 878076ba34aSJunchao Zhang Mat_Product *product = C->product; 879076ba34aSJunchao Zhang MatProductType ptype; 880076ba34aSJunchao Zhang Mat A, B; 881076ba34aSJunchao Zhang bool transA, transB; 882076ba34aSJunchao Zhang Mat_SeqAIJKokkos *akok, *bkok, *ckok; 883076ba34aSJunchao Zhang MatProductData_SeqAIJKokkos *pdata; 884076ba34aSJunchao Zhang MPI_Comm comm; 8850e3ece09SJunchao Zhang KokkosCsrMatrix csrmatA, csrmatB, csrmatC; 886a3f881fbSStefano Zampini 887a3f881fbSStefano Zampini PetscFunctionBegin; 888a3f881fbSStefano Zampini MatCheckProduct(C, 1); 8899566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)C, &comm)); 8905f80ce2aSJacob Faibussowitsch PetscCheck(!product->data, comm, PETSC_ERR_PLIB, "Product data not empty"); 891a3f881fbSStefano Zampini A = product->A; 892a3f881fbSStefano Zampini B = product->B; 8939566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 8949566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(B)); 895a3f881fbSStefano Zampini akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 896a3f881fbSStefano Zampini bkok = static_cast<Mat_SeqAIJKokkos *>(B->spptr); 8970e3ece09SJunchao Zhang csrmatA = akok->csrmat; 8980e3ece09SJunchao Zhang csrmatB = bkok->csrmat; 899076ba34aSJunchao Zhang 900a3f881fbSStefano Zampini ptype = product->type; 9010e3ece09SJunchao Zhang // Take advantage of the symmetry if true 9020e3ece09SJunchao Zhang if (A->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_AtB) { 9030e3ece09SJunchao Zhang ptype = MATPRODUCT_AB; 9040e3ece09SJunchao Zhang product->symbolic_used_the_fact_A_is_symmetric = PETSC_TRUE; 9050e3ece09SJunchao Zhang } 9060e3ece09SJunchao Zhang if (B->symmetric == PETSC_BOOL3_TRUE && ptype == MATPRODUCT_ABt) { 9070e3ece09SJunchao Zhang ptype = MATPRODUCT_AB; 9080e3ece09SJunchao Zhang product->symbolic_used_the_fact_B_is_symmetric = PETSC_TRUE; 9090e3ece09SJunchao Zhang } 9100e3ece09SJunchao Zhang 911a3f881fbSStefano Zampini switch (ptype) { 9129371c9d4SSatish Balay case MATPRODUCT_AB: 9139371c9d4SSatish Balay transA = false; 9149371c9d4SSatish Balay transB = false; 9150e6a1e94SMark Adams PetscCall(MatSetBlockSizesFromMats(C, A, B)); 9169371c9d4SSatish Balay break; 9179371c9d4SSatish Balay case MATPRODUCT_AtB: 9189371c9d4SSatish Balay transA = true; 9199371c9d4SSatish Balay transB = false; 9200e6a1e94SMark Adams if (A->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, A->cmap->bs)); 9210e6a1e94SMark Adams if (B->cmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, B->cmap->bs)); 9229371c9d4SSatish Balay break; 9239371c9d4SSatish Balay case MATPRODUCT_ABt: 9249371c9d4SSatish Balay transA = false; 9259371c9d4SSatish Balay transB = true; 9260e6a1e94SMark Adams if (A->rmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->rmap, A->rmap->bs)); 9270e6a1e94SMark Adams if (B->rmap->bs > 0) PetscCall(PetscLayoutSetBlockSize(C->cmap, B->rmap->bs)); 9289371c9d4SSatish Balay break; 929d71ae5a4SJacob Faibussowitsch default: 930d71ae5a4SJacob Faibussowitsch SETERRQ(comm, PETSC_ERR_PLIB, "Unsupported product type %s", MatProductTypes[product->type]); 931a3f881fbSStefano Zampini } 9320e3ece09SJunchao Zhang PetscCallCXX(product->data = pdata = new MatProductData_SeqAIJKokkos()); 933076ba34aSJunchao Zhang pdata->reusesym = product->api_user; 934a3f881fbSStefano Zampini 935076ba34aSJunchao Zhang /* TODO: add command line options to select spgemm algorithms */ 936866eb059SJunchao Zhang auto spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_DEFAULT; /* default alg is TPL if enabled, otherwise KK */ 937866eb059SJunchao Zhang 938866eb059SJunchao Zhang /* CUDA-10.2's spgemm has bugs. We prefer the SpGEMMreuse APIs introduced in cuda-11.4 */ 939866eb059SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 940866eb059SJunchao Zhang #if PETSC_PKG_CUDA_VERSION_LT(11, 4, 0) 941866eb059SJunchao Zhang spgemm_alg = KokkosSparse::SPGEMMAlgorithm::SPGEMM_KK; 942866eb059SJunchao Zhang #endif 943866eb059SJunchao Zhang #endif 9440e3ece09SJunchao Zhang PetscCallCXX(pdata->kh.create_spgemm_handle(spgemm_alg)); 945076ba34aSJunchao Zhang 9469566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 947076ba34aSJunchao Zhang /* TODO: Get rid of the explicit transpose once KK-spgemm implements the transpose option */ 948076ba34aSJunchao Zhang if (transA) { 9499566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(A, &csrmatA)); 950076ba34aSJunchao Zhang transA = false; 951076ba34aSJunchao Zhang } 952076ba34aSJunchao Zhang 953076ba34aSJunchao Zhang if (transB) { 9549566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosGenerateTranspose_Private(B, &csrmatB)); 955076ba34aSJunchao Zhang transB = false; 956076ba34aSJunchao Zhang } 957076ba34aSJunchao Zhang 9580e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_symbolic(pdata->kh, csrmatA, transA, csrmatB, transB, csrmatC)); 959076ba34aSJunchao Zhang /* spgemm_symbolic() only populates C's rowmap, but not C's column indices. 960076ba34aSJunchao Zhang So we have to do a fake spgemm_numeric() here to get csrmatC.j_d setup, before 961076ba34aSJunchao Zhang calling new Mat_SeqAIJKokkos(). 962076ba34aSJunchao Zhang TODO: Remove the fake spgemm_numeric() after KK fixed this problem. 963076ba34aSJunchao Zhang */ 9640e3ece09SJunchao Zhang PetscCallCXX(KokkosSparse::spgemm_numeric(pdata->kh, csrmatA, transA, csrmatB, transB, csrmatC)); 9650e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_KERNELS_VERSION_LT(4, 0, 0) 966866eb059SJunchao Zhang /* Query if KK outputs a sorted matrix. If not, we need to sort it */ 967866eb059SJunchao Zhang auto spgemmHandle = pdata->kh.get_spgemm_handle(); 968866eb059SJunchao Zhang if (spgemmHandle->get_sort_option() != 1) PetscCallCXX(sort_crs_matrix(csrmatC)); /* sort_option defaults to -1 in KK!*/ 969e944a159SJunchao Zhang #endif 9709566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 971076ba34aSJunchao Zhang 9729566063dSJacob Faibussowitsch PetscCallCXX(ckok = new Mat_SeqAIJKokkos(csrmatC)); 9739566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJKokkosWithCSRMatrix(C, ckok)); 974076ba34aSJunchao Zhang C->product->destroy = MatProductDataDestroy_SeqAIJKokkos; 9753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 976a3f881fbSStefano Zampini } 977a3f881fbSStefano Zampini 978a3f881fbSStefano Zampini /* handles sparse matrix matrix ops */ 979d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJKokkos(Mat mat) 980d71ae5a4SJacob Faibussowitsch { 981076ba34aSJunchao Zhang Mat_Product *product = mat->product; 982a3f881fbSStefano Zampini PetscBool Biskok = PETSC_FALSE, Ciskok = PETSC_TRUE; 983a3f881fbSStefano Zampini 984a3f881fbSStefano Zampini PetscFunctionBegin; 985a3f881fbSStefano Zampini MatCheckProduct(mat, 1); 9869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)product->B, MATSEQAIJKOKKOS, &Biskok)); 98748a46eb9SPierre Jolivet if (product->type == MATPRODUCT_ABC) PetscCall(PetscObjectTypeCompare((PetscObject)product->C, MATSEQAIJKOKKOS, &Ciskok)); 988a3f881fbSStefano Zampini if (Biskok && Ciskok) { 989a3f881fbSStefano Zampini switch (product->type) { 990a3f881fbSStefano Zampini case MATPRODUCT_AB: 991a3f881fbSStefano Zampini case MATPRODUCT_AtB: 992d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 993d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_SeqAIJKokkos_SeqAIJKokkos; 994d71ae5a4SJacob Faibussowitsch break; 995a3f881fbSStefano Zampini case MATPRODUCT_PtAP: 996a3f881fbSStefano Zampini case MATPRODUCT_RARt: 997d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 998d71ae5a4SJacob Faibussowitsch mat->ops->productsymbolic = MatProductSymbolic_ABC_Basic; 999d71ae5a4SJacob Faibussowitsch break; 1000d71ae5a4SJacob Faibussowitsch default: 1001d71ae5a4SJacob Faibussowitsch break; 1002a3f881fbSStefano Zampini } 1003a3f881fbSStefano Zampini } else { /* fallback for AIJ */ 10049566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ(mat)); 1005a3f881fbSStefano Zampini } 10063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1007a3f881fbSStefano Zampini } 1008a587d139SMark 1009d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatScale_SeqAIJKokkos(Mat A, PetscScalar a) 1010d71ae5a4SJacob Faibussowitsch { 1011f0cf5187SStefano Zampini Mat_SeqAIJKokkos *aijkok; 1012f0cf5187SStefano Zampini 1013f0cf5187SStefano Zampini PetscFunctionBegin; 10149566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 10159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 1016f0cf5187SStefano Zampini aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1017d326c3f1SJunchao Zhang KokkosBlas::scal(PetscGetKokkosExecutionSpace(), aijkok->a_dual.view_device(), a, aijkok->a_dual.view_device()); 10189566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(A)); 10199566063dSJacob Faibussowitsch PetscCall(PetscLogGpuFlops(aijkok->a_dual.extent(0))); 10209566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 10213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1022f0cf5187SStefano Zampini } 1023f0cf5187SStefano Zampini 1024f4747e26SJunchao Zhang // add a to A's diagonal (if A is square) or main diagonal (if A is rectangular) 1025f4747e26SJunchao Zhang static PetscErrorCode MatShift_SeqAIJKokkos(Mat A, PetscScalar a) 1026f4747e26SJunchao Zhang { 1027f4747e26SJunchao Zhang Mat_SeqAIJ *aijseq = static_cast<Mat_SeqAIJ *>(A->data); 1028f4747e26SJunchao Zhang 1029f4747e26SJunchao Zhang PetscFunctionBegin; 1030f4747e26SJunchao Zhang if (A->assembled && aijseq->diagonaldense) { // no missing diagonals 1031f4747e26SJunchao Zhang PetscInt n = PetscMin(A->rmap->n, A->cmap->n); 1032f4747e26SJunchao Zhang 1033f4747e26SJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 1034f4747e26SJunchao Zhang PetscCall(MatSeqAIJKokkosSyncDevice(A)); 1035f4747e26SJunchao Zhang const auto aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1036f4747e26SJunchao Zhang const auto &Aa = aijkok->a_dual.view_device(); 1037f4747e26SJunchao Zhang const auto &Adiag = aijkok->diag_dual.view_device(); 1038d326c3f1SJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, n), KOKKOS_LAMBDA(const PetscInt i) { Aa(Adiag(i)) += a; })); 1039f4747e26SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(A)); 1040f4747e26SJunchao Zhang PetscCall(PetscLogGpuFlops(n)); 1041f4747e26SJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 1042f4747e26SJunchao Zhang } else { // need reassembly, very slow! 1043f4747e26SJunchao Zhang PetscCall(MatShift_Basic(A, a)); 1044f4747e26SJunchao Zhang } 1045f4747e26SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1046f4747e26SJunchao Zhang } 1047f4747e26SJunchao Zhang 1048f4747e26SJunchao Zhang static PetscErrorCode MatDiagonalSet_SeqAIJKokkos(Mat Y, Vec D, InsertMode is) 1049f4747e26SJunchao Zhang { 1050f4747e26SJunchao Zhang Mat_SeqAIJ *aijseq = static_cast<Mat_SeqAIJ *>(Y->data); 1051f4747e26SJunchao Zhang 1052f4747e26SJunchao Zhang PetscFunctionBegin; 1053f4747e26SJunchao Zhang if (Y->assembled && aijseq->diagonaldense) { // no missing diagonals 1054f4747e26SJunchao Zhang ConstPetscScalarKokkosView dv; 1055f4747e26SJunchao Zhang PetscInt n, nv; 1056f4747e26SJunchao Zhang 1057f4747e26SJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 1058f4747e26SJunchao Zhang PetscCall(MatSeqAIJKokkosSyncDevice(Y)); 1059f4747e26SJunchao Zhang PetscCall(VecGetKokkosView(D, &dv)); 1060f4747e26SJunchao Zhang PetscCall(VecGetLocalSize(D, &nv)); 1061f4747e26SJunchao Zhang n = PetscMin(Y->rmap->n, Y->cmap->n); 1062f4747e26SJunchao Zhang PetscCheck(n == nv, PetscObjectComm((PetscObject)Y), PETSC_ERR_ARG_SIZ, "Matrix size and vector size do not match"); 1063f4747e26SJunchao Zhang 1064f4747e26SJunchao Zhang const auto aijkok = static_cast<Mat_SeqAIJKokkos *>(Y->spptr); 1065f4747e26SJunchao Zhang const auto &Aa = aijkok->a_dual.view_device(); 1066f4747e26SJunchao Zhang const auto &Adiag = aijkok->diag_dual.view_device(); 1067f4747e26SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1068d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, n), KOKKOS_LAMBDA(const PetscInt i) { 1069f4747e26SJunchao Zhang if (is == INSERT_VALUES) Aa(Adiag(i)) = dv(i); 1070f4747e26SJunchao Zhang else Aa(Adiag(i)) += dv(i); 1071f4747e26SJunchao Zhang })); 1072f4747e26SJunchao Zhang PetscCall(VecRestoreKokkosView(D, &dv)); 1073f4747e26SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(Y)); 1074f4747e26SJunchao Zhang PetscCall(PetscLogGpuFlops(n)); 1075f4747e26SJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 1076f4747e26SJunchao Zhang } else { // need reassembly, very slow! 1077f4747e26SJunchao Zhang PetscCall(MatDiagonalSet_Default(Y, D, is)); 1078f4747e26SJunchao Zhang } 1079f4747e26SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1080f4747e26SJunchao Zhang } 1081f4747e26SJunchao Zhang 1082f4747e26SJunchao Zhang static PetscErrorCode MatDiagonalScale_SeqAIJKokkos(Mat A, Vec ll, Vec rr) 1083f4747e26SJunchao Zhang { 1084f4747e26SJunchao Zhang Mat_SeqAIJ *aijseq = static_cast<Mat_SeqAIJ *>(A->data); 1085f4747e26SJunchao Zhang PetscInt m = A->rmap->n, n = A->cmap->n, nz = aijseq->nz; 1086f4747e26SJunchao Zhang ConstPetscScalarKokkosView lv, rv; 1087f4747e26SJunchao Zhang 1088f4747e26SJunchao Zhang PetscFunctionBegin; 1089f4747e26SJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 1090f4747e26SJunchao Zhang PetscCall(MatSeqAIJKokkosSyncDevice(A)); 1091f4747e26SJunchao Zhang const auto aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1092f4747e26SJunchao Zhang const auto &Aa = aijkok->a_dual.view_device(); 1093f4747e26SJunchao Zhang const auto &Ai = aijkok->i_dual.view_device(); 1094f4747e26SJunchao Zhang const auto &Aj = aijkok->j_dual.view_device(); 1095f4747e26SJunchao Zhang if (ll) { 1096f4747e26SJunchao Zhang PetscCall(VecGetLocalSize(ll, &m)); 1097f4747e26SJunchao Zhang PetscCheck(m == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Left scaling vector wrong length"); 1098f4747e26SJunchao Zhang PetscCall(VecGetKokkosView(ll, &lv)); 1099f4747e26SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( // for each row 1100d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), m, Kokkos::AUTO()), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 1101f4747e26SJunchao Zhang PetscInt i = t.league_rank(); // row i 1102f4747e26SJunchao Zhang PetscInt len = Ai(i + 1) - Ai(i); 1103f4747e26SJunchao Zhang // scale entries on the row 1104f4747e26SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(t, len), [&](PetscInt j) { Aa(Ai(i) + j) *= lv(i); }); 1105f4747e26SJunchao Zhang })); 1106f4747e26SJunchao Zhang PetscCall(VecRestoreKokkosView(ll, &lv)); 1107f4747e26SJunchao Zhang PetscCall(PetscLogGpuFlops(nz)); 1108f4747e26SJunchao Zhang } 1109f4747e26SJunchao Zhang if (rr) { 1110f4747e26SJunchao Zhang PetscCall(VecGetLocalSize(rr, &n)); 1111f4747e26SJunchao Zhang PetscCheck(n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Right scaling vector wrong length"); 1112f4747e26SJunchao Zhang PetscCall(VecGetKokkosView(rr, &rv)); 1113f4747e26SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( // for each nonzero 1114d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, nz), KOKKOS_LAMBDA(const PetscInt k) { Aa(k) *= rv(Aj(k)); })); 1115f4747e26SJunchao Zhang PetscCall(VecRestoreKokkosView(rr, &lv)); 1116f4747e26SJunchao Zhang PetscCall(PetscLogGpuFlops(nz)); 1117f4747e26SJunchao Zhang } 1118f4747e26SJunchao Zhang PetscCall(MatSeqAIJKokkosModifyDevice(A)); 1119f4747e26SJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 1120f4747e26SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1121f4747e26SJunchao Zhang } 1122f4747e26SJunchao Zhang 1123d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatZeroEntries_SeqAIJKokkos(Mat A) 1124d71ae5a4SJacob Faibussowitsch { 1125076ba34aSJunchao Zhang Mat_SeqAIJKokkos *aijkok; 1126a587d139SMark 1127a587d139SMark PetscFunctionBegin; 1128076ba34aSJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 11292328674fSJunchao Zhang if (aijkok) { /* Only zero the device if data is already there */ 1130d326c3f1SJunchao Zhang KokkosBlas::fill(PetscGetKokkosExecutionSpace(), aijkok->a_dual.view_device(), 0.0); 11319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(A)); 11322328674fSJunchao Zhang } else { /* Might be preallocated but not assembled */ 11339566063dSJacob Faibussowitsch PetscCall(MatZeroEntries_SeqAIJ(A)); 11342328674fSJunchao Zhang } 11353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1136a587d139SMark } 1137a587d139SMark 1138d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatGetDiagonal_SeqAIJKokkos(Mat A, Vec x) 1139d71ae5a4SJacob Faibussowitsch { 1140f78ce678SMark Adams Mat_SeqAIJKokkos *aijkok; 1141f78ce678SMark Adams PetscInt n; 1142f78ce678SMark Adams PetscScalarKokkosView xv; 1143f78ce678SMark Adams 1144f78ce678SMark Adams PetscFunctionBegin; 1145f78ce678SMark Adams PetscCall(VecGetLocalSize(x, &n)); 1146f78ce678SMark Adams PetscCheck(n == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Nonconforming matrix and vector"); 1147f78ce678SMark Adams PetscCheck(A->factortype == MAT_FACTOR_NONE, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatGetDiagonal_SeqAIJKokkos not supported on factored matrices"); 1148f78ce678SMark Adams 1149f78ce678SMark Adams PetscCall(MatSeqAIJKokkosSyncDevice(A)); 1150f78ce678SMark Adams aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1151f78ce678SMark Adams 1152f78ce678SMark Adams const auto &Aa = aijkok->a_dual.view_device(); 1153f78ce678SMark Adams const auto &Ai = aijkok->i_dual.view_device(); 1154f78ce678SMark Adams const auto &Adiag = aijkok->diag_dual.view_device(); 1155f78ce678SMark Adams 1156f78ce678SMark Adams PetscCall(VecGetKokkosViewWrite(x, &xv)); 11579371c9d4SSatish Balay Kokkos::parallel_for( 1158d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, n), KOKKOS_LAMBDA(const PetscInt i) { 1159f78ce678SMark Adams if (Adiag(i) < Ai(i + 1)) xv(i) = Aa(Adiag(i)); 1160f78ce678SMark Adams else xv(i) = 0; 1161f78ce678SMark Adams }); 1162f78ce678SMark Adams PetscCall(VecRestoreKokkosViewWrite(x, &xv)); 11633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1164f78ce678SMark Adams } 1165f78ce678SMark Adams 1166db78de30SJunchao Zhang /* Get a Kokkos View from a mat of type MatSeqAIJKokkos */ 1167d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqAIJGetKokkosView(Mat A, ConstMatScalarKokkosView *kv) 1168d71ae5a4SJacob Faibussowitsch { 1169db78de30SJunchao Zhang Mat_SeqAIJKokkos *aijkok; 1170db78de30SJunchao Zhang 1171db78de30SJunchao Zhang PetscFunctionBegin; 1172db78de30SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 11734f572ea9SToby Isaac PetscAssertPointer(kv, 2); 1174db78de30SJunchao Zhang PetscCheckTypeName(A, MATSEQAIJKOKKOS); 11759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 1176db78de30SJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1177076ba34aSJunchao Zhang *kv = aijkok->a_dual.view_device(); 11783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1179db78de30SJunchao Zhang } 1180db78de30SJunchao Zhang 1181d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqAIJRestoreKokkosView(Mat A, ConstMatScalarKokkosView *kv) 1182d71ae5a4SJacob Faibussowitsch { 1183db78de30SJunchao Zhang PetscFunctionBegin; 1184db78de30SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 11854f572ea9SToby Isaac PetscAssertPointer(kv, 2); 1186db78de30SJunchao Zhang PetscCheckTypeName(A, MATSEQAIJKOKKOS); 11873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1188db78de30SJunchao Zhang } 1189db78de30SJunchao Zhang 1190d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqAIJGetKokkosView(Mat A, MatScalarKokkosView *kv) 1191d71ae5a4SJacob Faibussowitsch { 1192db78de30SJunchao Zhang Mat_SeqAIJKokkos *aijkok; 1193db78de30SJunchao Zhang 1194db78de30SJunchao Zhang PetscFunctionBegin; 1195db78de30SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 11964f572ea9SToby Isaac PetscAssertPointer(kv, 2); 1197db78de30SJunchao Zhang PetscCheckTypeName(A, MATSEQAIJKOKKOS); 11989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 1199db78de30SJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1200076ba34aSJunchao Zhang *kv = aijkok->a_dual.view_device(); 12013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1202db78de30SJunchao Zhang } 1203db78de30SJunchao Zhang 1204d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqAIJRestoreKokkosView(Mat A, MatScalarKokkosView *kv) 1205d71ae5a4SJacob Faibussowitsch { 1206db78de30SJunchao Zhang PetscFunctionBegin; 1207db78de30SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 12084f572ea9SToby Isaac PetscAssertPointer(kv, 2); 1209db78de30SJunchao Zhang PetscCheckTypeName(A, MATSEQAIJKOKKOS); 12109566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(A)); 12113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1212db78de30SJunchao Zhang } 1213db78de30SJunchao Zhang 1214d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqAIJGetKokkosViewWrite(Mat A, MatScalarKokkosView *kv) 1215d71ae5a4SJacob Faibussowitsch { 1216db78de30SJunchao Zhang Mat_SeqAIJKokkos *aijkok; 1217db78de30SJunchao Zhang 1218db78de30SJunchao Zhang PetscFunctionBegin; 1219db78de30SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 12204f572ea9SToby Isaac PetscAssertPointer(kv, 2); 1221db78de30SJunchao Zhang PetscCheckTypeName(A, MATSEQAIJKOKKOS); 1222db78de30SJunchao Zhang aijkok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 1223076ba34aSJunchao Zhang *kv = aijkok->a_dual.view_device(); 12243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1225db78de30SJunchao Zhang } 1226db78de30SJunchao Zhang 1227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSeqAIJRestoreKokkosViewWrite(Mat A, MatScalarKokkosView *kv) 1228d71ae5a4SJacob Faibussowitsch { 1229db78de30SJunchao Zhang PetscFunctionBegin; 1230db78de30SJunchao Zhang PetscValidHeaderSpecific(A, MAT_CLASSID, 1); 12314f572ea9SToby Isaac PetscAssertPointer(kv, 2); 1232db78de30SJunchao Zhang PetscCheckTypeName(A, MATSEQAIJKOKKOS); 12339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(A)); 12343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1235db78de30SJunchao Zhang } 1236db78de30SJunchao Zhang 1237c0c276a7Ssdargavi PetscErrorCode MatCreateSeqAIJKokkosWithKokkosViews(MPI_Comm comm, PetscInt m, PetscInt n, Kokkos::View<PetscInt *> &i_d, Kokkos::View<PetscInt *> &j_d, Kokkos::View<PetscScalar *> &a_d, Mat *A) 1238c0c276a7Ssdargavi { 1239c0c276a7Ssdargavi Mat_SeqAIJKokkos *akok; 1240c0c276a7Ssdargavi 1241c0c276a7Ssdargavi PetscFunctionBegin; 1242c0c276a7Ssdargavi auto exec = PetscGetKokkosExecutionSpace(); 1243c0c276a7Ssdargavi // Create host copies of the input aij 1244c0c276a7Ssdargavi auto i_h = Kokkos::create_mirror_view_and_copy(HostMirrorMemorySpace(), i_d); 1245c0c276a7Ssdargavi auto j_h = Kokkos::create_mirror_view_and_copy(HostMirrorMemorySpace(), j_d); 1246c0c276a7Ssdargavi // Don't copy the vals to the host now 1247c0c276a7Ssdargavi auto a_h = Kokkos::create_mirror_view(HostMirrorMemorySpace(), a_d); 1248c0c276a7Ssdargavi 1249c0c276a7Ssdargavi MatScalarKokkosDualView a_dual = MatScalarKokkosDualView(a_d, a_h); 1250c0c276a7Ssdargavi // Note we have modified device data so it will copy lazily 1251c0c276a7Ssdargavi a_dual.modify_device(); 1252c0c276a7Ssdargavi MatRowMapKokkosDualView i_dual = MatRowMapKokkosDualView(i_d, i_h); 1253c0c276a7Ssdargavi MatColIdxKokkosDualView j_dual = MatColIdxKokkosDualView(j_d, j_h); 1254c0c276a7Ssdargavi 1255c0c276a7Ssdargavi PetscCallCXX(akok = new Mat_SeqAIJKokkos(m, n, j_dual.extent(0), i_dual, j_dual, a_dual)); 1256c0c276a7Ssdargavi PetscCall(MatCreate(comm, A)); 1257c0c276a7Ssdargavi PetscCall(MatSetSeqAIJKokkosWithCSRMatrix(*A, akok)); 1258c0c276a7Ssdargavi PetscFunctionReturn(PETSC_SUCCESS); 1259c0c276a7Ssdargavi } 1260c0c276a7Ssdargavi 1261c17cf699SJunchao Zhang /* Computes Y += alpha X */ 1262d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatAXPY_SeqAIJKokkos(Mat Y, PetscScalar alpha, Mat X, MatStructure pattern) 1263d71ae5a4SJacob Faibussowitsch { 1264a587d139SMark Mat_SeqAIJ *x = (Mat_SeqAIJ *)X->data, *y = (Mat_SeqAIJ *)Y->data; 1265c17cf699SJunchao Zhang Mat_SeqAIJKokkos *xkok, *ykok, *zkok; 1266c17cf699SJunchao Zhang ConstMatScalarKokkosView Xa; 1267c17cf699SJunchao Zhang MatScalarKokkosView Ya; 12684df4a32cSJunchao Zhang auto exec = PetscGetKokkosExecutionSpace(); 1269a587d139SMark 1270a587d139SMark PetscFunctionBegin; 1271c17cf699SJunchao Zhang PetscCheckTypeName(Y, MATSEQAIJKOKKOS); 1272c17cf699SJunchao Zhang PetscCheckTypeName(X, MATSEQAIJKOKKOS); 12739566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(Y)); 12749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(X)); 12759566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 1276db78de30SJunchao Zhang 1277c17cf699SJunchao Zhang if (pattern != SAME_NONZERO_PATTERN && x->nz == y->nz) { 1278a587d139SMark PetscBool e; 12799566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->i, y->i, Y->rmap->n + 1, &e)); 1280a587d139SMark if (e) { 12819566063dSJacob Faibussowitsch PetscCall(PetscArraycmp(x->j, y->j, y->nz, &e)); 1282c17cf699SJunchao Zhang if (e) pattern = SAME_NONZERO_PATTERN; 1283a587d139SMark } 1284a587d139SMark } 1285db78de30SJunchao Zhang 1286c17cf699SJunchao Zhang /* cusparseDcsrgeam2() computes C = alpha A + beta B. If one knew sparsity pattern of C, one can skip 1287c17cf699SJunchao Zhang cusparseScsrgeam2_bufferSizeExt() / cusparseXcsrgeam2Nnz(), and directly call cusparseScsrgeam2(). 1288c17cf699SJunchao Zhang If X is SUBSET_NONZERO_PATTERN of Y, we could take advantage of this cusparse feature. However, 1289c17cf699SJunchao Zhang KokkosSparse::spadd(alpha,A,beta,B,C) has symbolic and numeric phases, MatAXPY does not. 1290c17cf699SJunchao Zhang */ 1291c17cf699SJunchao Zhang ykok = static_cast<Mat_SeqAIJKokkos *>(Y->spptr); 1292c17cf699SJunchao Zhang xkok = static_cast<Mat_SeqAIJKokkos *>(X->spptr); 1293c17cf699SJunchao Zhang Xa = xkok->a_dual.view_device(); 1294c17cf699SJunchao Zhang Ya = ykok->a_dual.view_device(); 1295c17cf699SJunchao Zhang 1296c17cf699SJunchao Zhang if (pattern == SAME_NONZERO_PATTERN) { 1297d326c3f1SJunchao Zhang KokkosBlas::axpy(exec, alpha, Xa, Ya); 12989566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(Y)); 1299c17cf699SJunchao Zhang } else if (pattern == SUBSET_NONZERO_PATTERN) { 1300c17cf699SJunchao Zhang MatRowMapKokkosView Xi = xkok->i_dual.view_device(), Yi = ykok->i_dual.view_device(); 1301c17cf699SJunchao Zhang MatColIdxKokkosView Xj = xkok->j_dual.view_device(), Yj = ykok->j_dual.view_device(); 1302c17cf699SJunchao Zhang 13039371c9d4SSatish Balay Kokkos::parallel_for( 1304d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(exec, Y->rmap->n, 1), KOKKOS_LAMBDA(const KokkosTeamMemberType &t) { 13050e3ece09SJunchao Zhang PetscInt i = t.league_rank(); // row i 13060e3ece09SJunchao Zhang Kokkos::single(Kokkos::PerTeam(t), [=]() { 13070e3ece09SJunchao Zhang // Only one thread works in a team 1308c17cf699SJunchao Zhang PetscInt p, q = Yi(i); 13090e3ece09SJunchao Zhang for (p = Xi(i); p < Xi(i + 1); p++) { // For each nonzero on row i of X, 13100e3ece09SJunchao Zhang while (Xj(p) != Yj(q) && q < Yi(i + 1)) q++; // find the matching nonzero on row i of Y. 13110e3ece09SJunchao Zhang if (Xj(p) == Yj(q)) { // Found it 1312c17cf699SJunchao Zhang Ya(q) += alpha * Xa(p); 1313c17cf699SJunchao Zhang q++; 1314a587d139SMark } else { 13150e3ece09SJunchao Zhang // If not found, it indicates the input is wrong (X is not a SUBSET_NONZERO_PATTERN of Y). 13160e3ece09SJunchao Zhang // Just insert a NaN at the beginning of row i if it is not empty, to make the result wrong. 13170e3ece09SJunchao Zhang #if PETSC_PKG_KOKKOS_VERSION_GE(3, 7, 0) 13180e3ece09SJunchao Zhang if (Yi(i) != Yi(i + 1)) Ya(Yi(i)) = Kokkos::ArithTraits<PetscScalar>::nan(); 13198b8b16f9SJunchao Zhang #else 13200e3ece09SJunchao Zhang if (Yi(i) != Yi(i + 1)) Ya(Yi(i)) = Kokkos::Experimental::nan("1"); 13218b8b16f9SJunchao Zhang #endif 1322a587d139SMark } 1323c17cf699SJunchao Zhang } 1324c17cf699SJunchao Zhang }); 1325c17cf699SJunchao Zhang }); 13269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosModifyDevice(Y)); 13270e3ece09SJunchao Zhang } else { // different nonzero patterns 1328c17cf699SJunchao Zhang Mat Z; 1329c17cf699SJunchao Zhang KokkosCsrMatrix zcsr; 1330c17cf699SJunchao Zhang KernelHandle kh; 13310e3ece09SJunchao Zhang kh.create_spadd_handle(true); // X, Y are sorted 1332c17cf699SJunchao Zhang KokkosSparse::spadd_symbolic(&kh, xkok->csrmat, ykok->csrmat, zcsr); 1333c17cf699SJunchao Zhang KokkosSparse::spadd_numeric(&kh, alpha, xkok->csrmat, (PetscScalar)1.0, ykok->csrmat, zcsr); 1334c17cf699SJunchao Zhang zkok = new Mat_SeqAIJKokkos(zcsr); 13359566063dSJacob Faibussowitsch PetscCall(MatCreateSeqAIJKokkosWithCSRMatrix(PETSC_COMM_SELF, zkok, &Z)); 13369566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(Y, &Z)); 1337c17cf699SJunchao Zhang kh.destroy_spadd_handle(); 1338c17cf699SJunchao Zhang } 13399566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 13400e3ece09SJunchao Zhang PetscCall(PetscLogGpuFlops(xkok->a_dual.extent(0) * 2)); // Because we scaled X and then added it to Y 13413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1342a587d139SMark } 1343a587d139SMark 13442c4ab24aSJunchao Zhang struct MatCOOStruct_SeqAIJKokkos { 13452c4ab24aSJunchao Zhang PetscCount n; 13462c4ab24aSJunchao Zhang PetscCount Atot; 13472c4ab24aSJunchao Zhang PetscInt nz; 13482c4ab24aSJunchao Zhang PetscCountKokkosView jmap; 13492c4ab24aSJunchao Zhang PetscCountKokkosView perm; 13502c4ab24aSJunchao Zhang 13512c4ab24aSJunchao Zhang MatCOOStruct_SeqAIJKokkos(const MatCOOStruct_SeqAIJ *coo_h) 13522c4ab24aSJunchao Zhang { 13532c4ab24aSJunchao Zhang nz = coo_h->nz; 13542c4ab24aSJunchao Zhang n = coo_h->n; 13552c4ab24aSJunchao Zhang Atot = coo_h->Atot; 13562c4ab24aSJunchao Zhang jmap = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->jmap, nz + 1)); 13572c4ab24aSJunchao Zhang perm = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), PetscCountKokkosViewHost(coo_h->perm, Atot)); 13582c4ab24aSJunchao Zhang } 13592c4ab24aSJunchao Zhang }; 13602c4ab24aSJunchao Zhang 136149abdd8aSBarry Smith static PetscErrorCode MatCOOStructDestroy_SeqAIJKokkos(void **data) 13622c4ab24aSJunchao Zhang { 13632c4ab24aSJunchao Zhang PetscFunctionBegin; 136449abdd8aSBarry Smith PetscCallCXX(delete static_cast<MatCOOStruct_SeqAIJKokkos *>(*data)); 13652c4ab24aSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 13662c4ab24aSJunchao Zhang } 13672c4ab24aSJunchao Zhang 1368d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetPreallocationCOO_SeqAIJKokkos(Mat mat, PetscCount coo_n, PetscInt coo_i[], PetscInt coo_j[]) 1369d71ae5a4SJacob Faibussowitsch { 137042550becSJunchao Zhang Mat_SeqAIJKokkos *akok; 137142550becSJunchao Zhang Mat_SeqAIJ *aseq; 137203e76207SPierre Jolivet PetscContainer container_h; 13732c4ab24aSJunchao Zhang MatCOOStruct_SeqAIJ *coo_h; 13742c4ab24aSJunchao Zhang MatCOOStruct_SeqAIJKokkos *coo_d; 137542550becSJunchao Zhang 137642550becSJunchao Zhang PetscFunctionBegin; 13779566063dSJacob Faibussowitsch PetscCall(MatSetPreallocationCOO_SeqAIJ(mat, coo_n, coo_i, coo_j)); 1378394ed5ebSJunchao Zhang aseq = static_cast<Mat_SeqAIJ *>(mat->data); 137942550becSJunchao Zhang akok = static_cast<Mat_SeqAIJKokkos *>(mat->spptr); 1380cbc6b225SStefano Zampini delete akok; 1381f4747e26SJunchao Zhang mat->spptr = akok = new Mat_SeqAIJKokkos(mat->rmap->n, mat->cmap->n, aseq, mat->nonzerostate + 1, PETSC_FALSE); 13829566063dSJacob Faibussowitsch PetscCall(MatZeroEntries_SeqAIJKokkos(mat)); 13832c4ab24aSJunchao Zhang 13842c4ab24aSJunchao Zhang // Copy the COO struct to device 13852c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)mat, "__PETSc_MatCOOStruct_Host", (PetscObject *)&container_h)); 13862c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container_h, (void **)&coo_h)); 13872c4ab24aSJunchao Zhang PetscCallCXX(coo_d = new MatCOOStruct_SeqAIJKokkos(coo_h)); 13882c4ab24aSJunchao Zhang 13892c4ab24aSJunchao Zhang // Put the COO struct in a container and then attach that to the matrix 139003e76207SPierre Jolivet PetscCall(PetscObjectContainerCompose((PetscObject)mat, "__PETSc_MatCOOStruct_Device", coo_d, MatCOOStructDestroy_SeqAIJKokkos)); 13913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 139242550becSJunchao Zhang } 139342550becSJunchao Zhang 1394d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetValuesCOO_SeqAIJKokkos(Mat A, const PetscScalar v[], InsertMode imode) 1395d71ae5a4SJacob Faibussowitsch { 139642550becSJunchao Zhang MatScalarKokkosView Aa; 139742550becSJunchao Zhang ConstMatScalarKokkosView kv; 139842550becSJunchao Zhang PetscMemType memtype; 13992c4ab24aSJunchao Zhang PetscContainer container; 14002c4ab24aSJunchao Zhang MatCOOStruct_SeqAIJKokkos *coo; 140142550becSJunchao Zhang 140242550becSJunchao Zhang PetscFunctionBegin; 14032c4ab24aSJunchao Zhang PetscCall(PetscObjectQuery((PetscObject)A, "__PETSc_MatCOOStruct_Device", (PetscObject *)&container)); 14042c4ab24aSJunchao Zhang PetscCall(PetscContainerGetPointer(container, (void **)&coo)); 14052c4ab24aSJunchao Zhang 14062c4ab24aSJunchao Zhang const auto &n = coo->n; 14072c4ab24aSJunchao Zhang const auto &Annz = coo->nz; 14082c4ab24aSJunchao Zhang const auto &jmap = coo->jmap; 14092c4ab24aSJunchao Zhang const auto &perm = coo->perm; 14102c4ab24aSJunchao Zhang 14119566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(v, &memtype)); 141242550becSJunchao Zhang if (PetscMemTypeHost(memtype)) { /* If user gave v[] in host, we might need to copy it to device if any */ 14132c4ab24aSJunchao Zhang kv = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), ConstMatScalarKokkosViewHost(v, n)); 141442550becSJunchao Zhang } else { 14152c4ab24aSJunchao Zhang kv = ConstMatScalarKokkosView(v, n); /* Directly use v[]'s memory */ 141642550becSJunchao Zhang } 141742550becSJunchao Zhang 1418c7b718f4SJunchao Zhang if (imode == INSERT_VALUES) PetscCall(MatSeqAIJGetKokkosViewWrite(A, &Aa)); /* write matrix values */ 1419c7b718f4SJunchao Zhang else PetscCall(MatSeqAIJGetKokkosView(A, &Aa)); /* read & write matrix values */ 142042550becSJunchao Zhang 142108bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 14229371c9d4SSatish Balay Kokkos::parallel_for( 1423d326c3f1SJunchao Zhang Kokkos::RangePolicy<>(PetscGetKokkosExecutionSpace(), 0, Annz), KOKKOS_LAMBDA(const PetscCount i) { 1424c7b718f4SJunchao Zhang PetscScalar sum = 0.0; 1425c7b718f4SJunchao Zhang for (PetscCount k = jmap(i); k < jmap(i + 1); k++) sum += kv(perm(k)); 1426c7b718f4SJunchao Zhang Aa(i) = (imode == INSERT_VALUES ? 0.0 : Aa(i)) + sum; 1427c7b718f4SJunchao Zhang }); 142808bb9926SJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 1429394ed5ebSJunchao Zhang 14309566063dSJacob Faibussowitsch if (imode == INSERT_VALUES) PetscCall(MatSeqAIJRestoreKokkosViewWrite(A, &Aa)); 14319566063dSJacob Faibussowitsch else PetscCall(MatSeqAIJRestoreKokkosView(A, &Aa)); 14323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 143342550becSJunchao Zhang } 143442550becSJunchao Zhang 1435d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSetOps_SeqAIJKokkos(Mat A) 1436d71ae5a4SJacob Faibussowitsch { 1437076ba34aSJunchao Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 1438076ba34aSJunchao Zhang 14398c3ff71bSJunchao Zhang PetscFunctionBegin; 1440076ba34aSJunchao Zhang A->offloadmask = PETSC_OFFLOAD_KOKKOS; /* We do not really use this flag */ 14416f3d89d0SStefano Zampini A->boundtocpu = PETSC_FALSE; 14426f3d89d0SStefano Zampini 14438c3ff71bSJunchao Zhang A->ops->assemblyend = MatAssemblyEnd_SeqAIJKokkos; 14448c3ff71bSJunchao Zhang A->ops->destroy = MatDestroy_SeqAIJKokkos; 14458c3ff71bSJunchao Zhang A->ops->duplicate = MatDuplicate_SeqAIJKokkos; 1446a587d139SMark A->ops->axpy = MatAXPY_SeqAIJKokkos; 1447f0cf5187SStefano Zampini A->ops->scale = MatScale_SeqAIJKokkos; 1448a587d139SMark A->ops->zeroentries = MatZeroEntries_SeqAIJKokkos; 1449076ba34aSJunchao Zhang A->ops->productsetfromoptions = MatProductSetFromOptions_SeqAIJKokkos; 14508c3ff71bSJunchao Zhang A->ops->mult = MatMult_SeqAIJKokkos; 14518c3ff71bSJunchao Zhang A->ops->multadd = MatMultAdd_SeqAIJKokkos; 14528c3ff71bSJunchao Zhang A->ops->multtranspose = MatMultTranspose_SeqAIJKokkos; 14538c3ff71bSJunchao Zhang A->ops->multtransposeadd = MatMultTransposeAdd_SeqAIJKokkos; 14548c3ff71bSJunchao Zhang A->ops->multhermitiantranspose = MatMultHermitianTranspose_SeqAIJKokkos; 14558c3ff71bSJunchao Zhang A->ops->multhermitiantransposeadd = MatMultHermitianTransposeAdd_SeqAIJKokkos; 1456076ba34aSJunchao Zhang A->ops->productnumeric = MatProductNumeric_SeqAIJKokkos_SeqAIJKokkos; 14570ecb592aSJunchao Zhang A->ops->transpose = MatTranspose_SeqAIJKokkos; 1458152b3e56SJunchao Zhang A->ops->setoption = MatSetOption_SeqAIJKokkos; 1459f78ce678SMark Adams A->ops->getdiagonal = MatGetDiagonal_SeqAIJKokkos; 1460f4747e26SJunchao Zhang A->ops->shift = MatShift_SeqAIJKokkos; 1461f4747e26SJunchao Zhang A->ops->diagonalset = MatDiagonalSet_SeqAIJKokkos; 1462f4747e26SJunchao Zhang A->ops->diagonalscale = MatDiagonalScale_SeqAIJKokkos; 1463076ba34aSJunchao Zhang a->ops->getarray = MatSeqAIJGetArray_SeqAIJKokkos; 1464076ba34aSJunchao Zhang a->ops->restorearray = MatSeqAIJRestoreArray_SeqAIJKokkos; 1465076ba34aSJunchao Zhang a->ops->getarrayread = MatSeqAIJGetArrayRead_SeqAIJKokkos; 1466076ba34aSJunchao Zhang a->ops->restorearrayread = MatSeqAIJRestoreArrayRead_SeqAIJKokkos; 1467076ba34aSJunchao Zhang a->ops->getarraywrite = MatSeqAIJGetArrayWrite_SeqAIJKokkos; 1468076ba34aSJunchao Zhang a->ops->restorearraywrite = MatSeqAIJRestoreArrayWrite_SeqAIJKokkos; 14697ee59b9bSJunchao Zhang a->ops->getcsrandmemtype = MatSeqAIJGetCSRAndMemType_SeqAIJKokkos; 147042550becSJunchao Zhang 14719566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetPreallocationCOO_C", MatSetPreallocationCOO_SeqAIJKokkos)); 14729566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatSetValuesCOO_C", MatSetValuesCOO_SeqAIJKokkos)); 147357761e9aSJunchao Zhang #if defined(PETSC_HAVE_HYPRE) 147457761e9aSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)A, "MatConvert_seqaijkokkos_hypre_C", MatConvert_AIJ_HYPRE)); 147557761e9aSJunchao Zhang #endif 14763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1477076ba34aSJunchao Zhang } 1478076ba34aSJunchao Zhang 14799d13fa56SJunchao Zhang /* 14809d13fa56SJunchao Zhang Extract the (prescribled) diagonal blocks of the matrix and then invert them 14819d13fa56SJunchao Zhang 14829d13fa56SJunchao Zhang Input Parameters: 14839d13fa56SJunchao Zhang + A - the MATSEQAIJKOKKOS matrix 14849d13fa56SJunchao Zhang . bs - block sizes in 'csr' format, i.e., the i-th block has size bs(i+1) - bs(i) 14859d13fa56SJunchao Zhang . bs2 - square of block sizes in 'csr' format, i.e., the i-th block should be stored at offset bs2(i) in diagVal[] 14869d13fa56SJunchao Zhang . blkMap - map row ids to block ids, i.e., row i belongs to the block blkMap(i) 14879d13fa56SJunchao Zhang - work - a pre-allocated work buffer (as big as diagVal) for use by this routine 14889d13fa56SJunchao Zhang 14899d13fa56SJunchao Zhang Output Parameter: 14909d13fa56SJunchao Zhang . diagVal - the (pre-allocated) buffer to store the inverted blocks (each block is stored in column-major order) 14919d13fa56SJunchao Zhang */ 14929d13fa56SJunchao Zhang PETSC_INTERN PetscErrorCode MatInvertVariableBlockDiagonal_SeqAIJKokkos(Mat A, const PetscIntKokkosView &bs, const PetscIntKokkosView &bs2, const PetscIntKokkosView &blkMap, PetscScalarKokkosView &work, PetscScalarKokkosView &diagVal) 14939d13fa56SJunchao Zhang { 14949d13fa56SJunchao Zhang Mat_SeqAIJKokkos *akok = static_cast<Mat_SeqAIJKokkos *>(A->spptr); 14959d13fa56SJunchao Zhang PetscInt nblocks = bs.extent(0) - 1; 14969d13fa56SJunchao Zhang 14979d13fa56SJunchao Zhang PetscFunctionBegin; 14989d13fa56SJunchao Zhang PetscCall(MatSeqAIJKokkosSyncDevice(A)); // Since we'll access A's value on device 14999d13fa56SJunchao Zhang 15009d13fa56SJunchao Zhang // Pull out the diagonal blocks of the matrix and then invert the blocks 15019d13fa56SJunchao Zhang auto Aa = akok->a_dual.view_device(); 15029d13fa56SJunchao Zhang auto Ai = akok->i_dual.view_device(); 15039d13fa56SJunchao Zhang auto Aj = akok->j_dual.view_device(); 15049d13fa56SJunchao Zhang auto Adiag = akok->diag_dual.view_device(); 15059d13fa56SJunchao Zhang // TODO: how to tune the team size? 150645402d8aSJunchao Zhang #if defined(KOKKOS_ENABLE_UNIFIED_MEMORY) 15079d13fa56SJunchao Zhang auto ts = Kokkos::AUTO(); 15089d13fa56SJunchao Zhang #else 15099d13fa56SJunchao Zhang auto ts = 16; // improved performance 30% over Kokkos::AUTO() with CUDA, but failed with "Kokkos::abort: Requested Team Size is too large!" on CPUs 15109d13fa56SJunchao Zhang #endif 15119d13fa56SJunchao Zhang PetscCallCXX(Kokkos::parallel_for( 1512d326c3f1SJunchao Zhang Kokkos::TeamPolicy<>(PetscGetKokkosExecutionSpace(), nblocks, ts), KOKKOS_LAMBDA(const KokkosTeamMemberType &teamMember) { 15139d13fa56SJunchao Zhang const PetscInt bid = teamMember.league_rank(); // block id 15149d13fa56SJunchao Zhang const PetscInt rstart = bs(bid); // this block starts from this row 15159d13fa56SJunchao Zhang const PetscInt m = bs(bid + 1) - bs(bid); // size of this block 15169d13fa56SJunchao Zhang const auto &B = Kokkos::View<PetscScalar **, Kokkos::LayoutLeft>(&diagVal(bs2(bid)), m, m); // column-major order 15179d13fa56SJunchao Zhang const auto &W = PetscScalarKokkosView(&work(bs2(bid)), m * m); 15189d13fa56SJunchao Zhang 15199d13fa56SJunchao Zhang Kokkos::parallel_for(Kokkos::TeamThreadRange(teamMember, m), [=](const PetscInt &r) { // r-th row in B 15209d13fa56SJunchao Zhang PetscInt i = rstart + r; // i-th row in A 15219d13fa56SJunchao Zhang 15229d13fa56SJunchao Zhang if (Ai(i) <= Adiag(i) && Adiag(i) < Ai(i + 1)) { // if the diagonal exists (common case) 15239d13fa56SJunchao Zhang PetscInt first = Adiag(i) - r; // we start to check nonzeros from here along this row 15249d13fa56SJunchao Zhang 15259d13fa56SJunchao Zhang for (PetscInt c = 0; c < m; c++) { // walk n steps to see what column indices we will meet 15269d13fa56SJunchao Zhang if (first + c < Ai(i) || first + c >= Ai(i + 1)) { // this entry (first+c) is out of range of this row, in other words, its value is zero 15279d13fa56SJunchao Zhang B(r, c) = 0.0; 15289d13fa56SJunchao Zhang } else if (Aj(first + c) == rstart + c) { // this entry is right on the (rstart+c) column 15299d13fa56SJunchao Zhang B(r, c) = Aa(first + c); 15309d13fa56SJunchao Zhang } else { // this entry does not show up in the CSR 15319d13fa56SJunchao Zhang B(r, c) = 0.0; 15329d13fa56SJunchao Zhang } 15339d13fa56SJunchao Zhang } 15349d13fa56SJunchao Zhang } else { // rare case that the diagonal does not exist 15359d13fa56SJunchao Zhang const PetscInt begin = Ai(i); 15369d13fa56SJunchao Zhang const PetscInt end = Ai(i + 1); 15379d13fa56SJunchao Zhang for (PetscInt c = 0; c < m; c++) B(r, c) = 0.0; 15389d13fa56SJunchao Zhang for (PetscInt j = begin; j < end; j++) { // scan the whole row; could use binary search but this is a rare case so we did not. 15399d13fa56SJunchao Zhang if (rstart <= Aj(j) && Aj(j) < rstart + m) B(r, Aj(j) - rstart) = Aa(j); 15409d13fa56SJunchao Zhang else if (Aj(j) >= rstart + m) break; 15419d13fa56SJunchao Zhang } 15429d13fa56SJunchao Zhang } 15439d13fa56SJunchao Zhang }); 15449d13fa56SJunchao Zhang 15459d13fa56SJunchao Zhang // LU-decompose B (w/o pivoting) and then invert B 15469d13fa56SJunchao Zhang KokkosBatched::TeamLU<KokkosTeamMemberType, KokkosBatched::Algo::LU::Unblocked>::invoke(teamMember, B, 0.0); 15479d13fa56SJunchao Zhang KokkosBatched::TeamInverseLU<KokkosTeamMemberType, KokkosBatched::Algo::InverseLU::Unblocked>::invoke(teamMember, B, W); 15489d13fa56SJunchao Zhang })); 15499d13fa56SJunchao Zhang // PetscLogGpuFlops() is done in the caller PCSetUp_VPBJacobi_Kokkos as we don't want to compute the flops in kernels 15509d13fa56SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 15519d13fa56SJunchao Zhang } 15529d13fa56SJunchao Zhang 1553d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSetSeqAIJKokkosWithCSRMatrix(Mat A, Mat_SeqAIJKokkos *akok) 1554d71ae5a4SJacob Faibussowitsch { 1555076ba34aSJunchao Zhang Mat_SeqAIJ *aseq; 1556076ba34aSJunchao Zhang PetscInt i, m, n; 15574df4a32cSJunchao Zhang auto exec = PetscGetKokkosExecutionSpace(); 1558076ba34aSJunchao Zhang 1559076ba34aSJunchao Zhang PetscFunctionBegin; 15605f80ce2aSJacob Faibussowitsch PetscCheck(!A->spptr, PETSC_COMM_SELF, PETSC_ERR_PLIB, "A->spptr is supposed to be empty"); 1561076ba34aSJunchao Zhang 1562076ba34aSJunchao Zhang m = akok->nrows(); 1563076ba34aSJunchao Zhang n = akok->ncols(); 15649566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, m, n, m, n)); 15659566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATSEQAIJKOKKOS)); 1566076ba34aSJunchao Zhang 1567076ba34aSJunchao Zhang /* Set up data structures of A as a MATSEQAIJ */ 15689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(A, MAT_SKIP_ALLOCATION, NULL)); 156957508eceSPierre Jolivet aseq = (Mat_SeqAIJ *)A->data; 1570076ba34aSJunchao Zhang 1571*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncHost(akok->i_dual, exec)); /* We always need sync'ed i, j on host */ 1572*f3d3cd90SZach Atkins PetscCall(KokkosDualViewSyncHost(akok->j_dual, exec)); 1573076ba34aSJunchao Zhang 1574076ba34aSJunchao Zhang aseq->i = akok->i_host_data(); 1575076ba34aSJunchao Zhang aseq->j = akok->j_host_data(); 1576076ba34aSJunchao Zhang aseq->a = akok->a_host_data(); 1577076ba34aSJunchao Zhang aseq->nonew = -1; /*this indicates that inserting a new value in the matrix that generates a new nonzero is an error*/ 1578076ba34aSJunchao Zhang aseq->free_a = PETSC_FALSE; 1579076ba34aSJunchao Zhang aseq->free_ij = PETSC_FALSE; 1580076ba34aSJunchao Zhang aseq->nz = akok->nnz(); 1581076ba34aSJunchao Zhang aseq->maxnz = aseq->nz; 1582076ba34aSJunchao Zhang 15839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &aseq->imax)); 15849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &aseq->ilen)); 1585ad540459SPierre Jolivet for (i = 0; i < m; i++) aseq->ilen[i] = aseq->imax[i] = aseq->i[i + 1] - aseq->i[i]; 1586076ba34aSJunchao Zhang 1587076ba34aSJunchao Zhang /* It is critical to set the nonzerostate, as we use it to check if sparsity pattern (hence data) has changed on host in MatAssemblyEnd */ 1588076ba34aSJunchao Zhang akok->nonzerostate = A->nonzerostate; 1589ff751488SJunchao Zhang A->spptr = akok; /* Set A->spptr before MatAssembly so that A->spptr won't be allocated again there */ 15909566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 15919566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 15923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1593076ba34aSJunchao Zhang } 1594076ba34aSJunchao Zhang 15950e3ece09SJunchao Zhang PETSC_INTERN PetscErrorCode MatSeqAIJKokkosGetKokkosCsrMatrix(Mat A, KokkosCsrMatrix *csr) 15960e3ece09SJunchao Zhang { 15970e3ece09SJunchao Zhang PetscFunctionBegin; 15980e3ece09SJunchao Zhang PetscCall(MatSeqAIJKokkosSyncDevice(A)); 15990e3ece09SJunchao Zhang *csr = static_cast<Mat_SeqAIJKokkos *>(A->spptr)->csrmat; 16000e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 16010e3ece09SJunchao Zhang } 16020e3ece09SJunchao Zhang 16030e3ece09SJunchao Zhang PETSC_INTERN PetscErrorCode MatCreateSeqAIJKokkosWithKokkosCsrMatrix(MPI_Comm comm, KokkosCsrMatrix csr, Mat *A) 16040e3ece09SJunchao Zhang { 16050e3ece09SJunchao Zhang Mat_SeqAIJKokkos *akok; 16064d86920dSPierre Jolivet 16070e3ece09SJunchao Zhang PetscFunctionBegin; 16080e3ece09SJunchao Zhang PetscCallCXX(akok = new Mat_SeqAIJKokkos(csr)); 16090e3ece09SJunchao Zhang PetscCall(MatCreate(comm, A)); 16100e3ece09SJunchao Zhang PetscCall(MatSetSeqAIJKokkosWithCSRMatrix(*A, akok)); 16110e3ece09SJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 16120e3ece09SJunchao Zhang } 16130e3ece09SJunchao Zhang 1614076ba34aSJunchao Zhang /* Crete a SEQAIJKOKKOS matrix with a Mat_SeqAIJKokkos data structure 1615076ba34aSJunchao Zhang 1616076ba34aSJunchao Zhang Note we have names like MatSeqAIJSetPreallocationCSR, so I use capitalized CSR 1617076ba34aSJunchao Zhang */ 1618d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatCreateSeqAIJKokkosWithCSRMatrix(MPI_Comm comm, Mat_SeqAIJKokkos *akok, Mat *A) 1619d71ae5a4SJacob Faibussowitsch { 1620076ba34aSJunchao Zhang PetscFunctionBegin; 16219566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 16229566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJKokkosWithCSRMatrix(*A, akok)); 16233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16248c3ff71bSJunchao Zhang } 16258c3ff71bSJunchao Zhang 1626152b3e56SJunchao Zhang /*@C 162711a5261eSBarry Smith MatCreateSeqAIJKokkos - Creates a sparse matrix in `MATSEQAIJKOKKOS` (compressed row) format 16288c3ff71bSJunchao Zhang (the default parallel PETSc format). This matrix will ultimately be handled by 162920f4b53cSBarry Smith Kokkos for calculations. 16308c3ff71bSJunchao Zhang 16318c3ff71bSJunchao Zhang Collective 16328c3ff71bSJunchao Zhang 16338c3ff71bSJunchao Zhang Input Parameters: 163411a5261eSBarry Smith + comm - MPI communicator, set to `PETSC_COMM_SELF` 16358c3ff71bSJunchao Zhang . m - number of rows 16368c3ff71bSJunchao Zhang . n - number of columns 163720f4b53cSBarry Smith . nz - number of nonzeros per row (same for all rows), ignored if `nnz` is provided 163820f4b53cSBarry Smith - nnz - array containing the number of nonzeros in the various rows (possibly different for each row) or `NULL` 16398c3ff71bSJunchao Zhang 16408c3ff71bSJunchao Zhang Output Parameter: 16418c3ff71bSJunchao Zhang . A - the matrix 16428c3ff71bSJunchao Zhang 16432ef1f0ffSBarry Smith Level: intermediate 16442ef1f0ffSBarry Smith 16452ef1f0ffSBarry Smith Notes: 164611a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 16478c3ff71bSJunchao Zhang MatXXXXSetPreallocation() paradgm instead of this routine directly. 164811a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqAIJSetPreallocation()`] 16498c3ff71bSJunchao Zhang 165011a5261eSBarry Smith The AIJ format, also called 16512ef1f0ffSBarry Smith compressed row storage, is fully compatible with standard Fortran 16528c3ff71bSJunchao Zhang storage. That is, the stored row and column indices can begin at 165320f4b53cSBarry Smith either one (as in Fortran) or zero. 16548c3ff71bSJunchao Zhang 16552ef1f0ffSBarry Smith Specify the preallocated storage with either `nz` or `nnz` (not both). 16562ef1f0ffSBarry Smith Set `nz` = `PETSC_DEFAULT` and `nnz` = `NULL` for PETSc to control dynamic memory 16572ef1f0ffSBarry Smith allocation. 16588c3ff71bSJunchao Zhang 1659fe59aa6dSJacob Faibussowitsch .seealso: [](ch_matrices), `Mat`, `MatCreate()`, `MatCreateAIJ()`, `MatSetValues()`, `MatSeqAIJSetColumnIndices()`, `MatCreateSeqAIJWithArrays()` 16608c3ff71bSJunchao Zhang @*/ 1661d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSeqAIJKokkos(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt nz, const PetscInt nnz[], Mat *A) 1662d71ae5a4SJacob Faibussowitsch { 16638c3ff71bSJunchao Zhang PetscFunctionBegin; 16649566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 16659566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 16669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, m, n)); 16679566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQAIJKOKKOS)); 16689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(*A, nz, (PetscInt *)nnz)); 16693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16708c3ff71bSJunchao Zhang } 1671930e68a5SMark Adams 1672aac854edSJunchao Zhang // After matrix numeric factorization, there are still steps to do before triangular solve can be called. 1673aac854edSJunchao Zhang // For example, for transpose solve, we might need to compute the transpose matrices if the solver does not support it (such as KK, while cusparse does). 1674aac854edSJunchao Zhang // In cusparse, one has to call cusparseSpSV_analysis() with updated triangular matrix values before calling cusparseSpSV_solve(). 1675aac854edSJunchao Zhang // Simiarily, in KK sptrsv_symbolic() has to be called before sptrsv_solve(). We put these steps in MatSeqAIJKokkos{Transpose}SolveCheck. 1676aac854edSJunchao Zhang static PetscErrorCode MatSeqAIJKokkosSolveCheck(Mat A) 1677d71ae5a4SJacob Faibussowitsch { 167886a27549SJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)A->spptr; 1679aac854edSJunchao Zhang const PetscBool has_lower = factors->iL_d.extent(0) ? PETSC_TRUE : PETSC_FALSE; // false with Choleksy 1680aac854edSJunchao Zhang const PetscBool has_upper = factors->iU_d.extent(0) ? PETSC_TRUE : PETSC_FALSE; // true with LU and Choleksy 168186a27549SJunchao Zhang 168286a27549SJunchao Zhang PetscFunctionBegin; 1683aac854edSJunchao Zhang if (!factors->sptrsv_symbolic_completed) { // If sptrsv_symbolic was not called yet 1684aac854edSJunchao Zhang if (has_upper) PetscCallCXX(sptrsv_symbolic(&factors->khU, factors->iU_d, factors->jU_d, factors->aU_d)); 1685aac854edSJunchao Zhang if (has_lower) PetscCallCXX(sptrsv_symbolic(&factors->khL, factors->iL_d, factors->jL_d, factors->aL_d)); 168686a27549SJunchao Zhang factors->sptrsv_symbolic_completed = PETSC_TRUE; 168786a27549SJunchao Zhang } 16883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 168986a27549SJunchao Zhang } 169086a27549SJunchao Zhang 1691d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatSeqAIJKokkosTransposeSolveCheck(Mat A) 1692d71ae5a4SJacob Faibussowitsch { 1693aac854edSJunchao Zhang const PetscInt n = A->rmap->n; 169486a27549SJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)A->spptr; 1695aac854edSJunchao Zhang const PetscBool has_lower = factors->iL_d.extent(0) ? PETSC_TRUE : PETSC_FALSE; // false with Choleksy 1696aac854edSJunchao Zhang const PetscBool has_upper = factors->iU_d.extent(0) ? PETSC_TRUE : PETSC_FALSE; // true with LU or Choleksy 169786a27549SJunchao Zhang 169886a27549SJunchao Zhang PetscFunctionBegin; 1699aac854edSJunchao Zhang if (!factors->transpose_updated) { 1700aac854edSJunchao Zhang if (has_upper) { 1701aac854edSJunchao Zhang if (!factors->iUt_d.extent(0)) { // Allocate Ut on device if not yet 1702aac854edSJunchao Zhang factors->iUt_d = MatRowMapKokkosView("factors->iUt_d", n + 1); // KK requires this view to be initialized to 0 to call transpose_matrix 17037b8d4ba6SJunchao Zhang factors->jUt_d = MatColIdxKokkosView(NoInit("factors->jUt_d"), factors->jU_d.extent(0)); 17047b8d4ba6SJunchao Zhang factors->aUt_d = MatScalarKokkosView(NoInit("factors->aUt_d"), factors->aU_d.extent(0)); 1705aac854edSJunchao Zhang } 170686a27549SJunchao Zhang 1707aac854edSJunchao Zhang if (factors->iU_h.extent(0)) { // If U is on host (factorization was done on host), we also compute the transpose on host 1708aac854edSJunchao Zhang if (!factors->U) { 1709aac854edSJunchao Zhang Mat_SeqAIJ *seq; 171086a27549SJunchao Zhang 1711aac854edSJunchao Zhang PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, n, n, factors->iU_h.data(), factors->jU_h.data(), factors->aU_h.data(), &factors->U)); 1712aac854edSJunchao Zhang PetscCall(MatTranspose(factors->U, MAT_INITIAL_MATRIX, &factors->Ut)); 171386a27549SJunchao Zhang 1714aac854edSJunchao Zhang seq = static_cast<Mat_SeqAIJ *>(factors->Ut->data); 1715aac854edSJunchao Zhang factors->iUt_h = MatRowMapKokkosViewHost(seq->i, n + 1); 1716aac854edSJunchao Zhang factors->jUt_h = MatColIdxKokkosViewHost(seq->j, seq->nz); 1717aac854edSJunchao Zhang factors->aUt_h = MatScalarKokkosViewHost(seq->a, seq->nz); 1718aac854edSJunchao Zhang } else { 1719aac854edSJunchao Zhang PetscCall(MatTranspose(factors->U, MAT_REUSE_MATRIX, &factors->Ut)); // Matrix Ut' data is aliased with {i, j, a}Ut_h 1720aac854edSJunchao Zhang } 1721aac854edSJunchao Zhang // Copy Ut from host to device 1722aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->iUt_d, factors->iUt_h)); 1723aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->jUt_d, factors->jUt_h)); 1724aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->aUt_d, factors->aUt_h)); 1725aac854edSJunchao Zhang } else { // If U was computed on device, we also compute the transpose there 1726aac854edSJunchao Zhang // TODO: KK transpose_matrix() does not sort column indices, however cusparse requires sorted indices. We have to sort the indices, until KK provides finer control options. 1727aac854edSJunchao Zhang PetscCallCXX(transpose_matrix<ConstMatRowMapKokkosView, ConstMatColIdxKokkosView, ConstMatScalarKokkosView, MatRowMapKokkosView, MatColIdxKokkosView, MatScalarKokkosView, MatRowMapKokkosView, DefaultExecutionSpace>(n, n, factors->iU_d, 1728aac854edSJunchao Zhang factors->jU_d, factors->aU_d, 1729aac854edSJunchao Zhang factors->iUt_d, factors->jUt_d, 1730aac854edSJunchao Zhang factors->aUt_d)); 1731aac854edSJunchao Zhang PetscCallCXX(sort_crs_matrix<DefaultExecutionSpace, MatRowMapKokkosView, MatColIdxKokkosView, MatScalarKokkosView>(factors->iUt_d, factors->jUt_d, factors->aUt_d)); 1732aac854edSJunchao Zhang } 1733aac854edSJunchao Zhang PetscCallCXX(sptrsv_symbolic(&factors->khUt, factors->iUt_d, factors->jUt_d, factors->aUt_d)); 1734aac854edSJunchao Zhang } 1735aac854edSJunchao Zhang 1736aac854edSJunchao Zhang // do the same for L with LU 1737aac854edSJunchao Zhang if (has_lower) { 1738aac854edSJunchao Zhang if (!factors->iLt_d.extent(0)) { // Allocate Lt on device if not yet 1739aac854edSJunchao Zhang factors->iLt_d = MatRowMapKokkosView("factors->iLt_d", n + 1); // KK requires this view to be initialized to 0 to call transpose_matrix 1740aac854edSJunchao Zhang factors->jLt_d = MatColIdxKokkosView(NoInit("factors->jLt_d"), factors->jL_d.extent(0)); 1741aac854edSJunchao Zhang factors->aLt_d = MatScalarKokkosView(NoInit("factors->aLt_d"), factors->aL_d.extent(0)); 1742aac854edSJunchao Zhang } 1743aac854edSJunchao Zhang 1744aac854edSJunchao Zhang if (factors->iL_h.extent(0)) { // If L is on host, we also compute the transpose on host 1745aac854edSJunchao Zhang if (!factors->L) { 1746aac854edSJunchao Zhang Mat_SeqAIJ *seq; 1747aac854edSJunchao Zhang 1748aac854edSJunchao Zhang PetscCall(MatCreateSeqAIJWithArrays(PETSC_COMM_SELF, n, n, factors->iL_h.data(), factors->jL_h.data(), factors->aL_h.data(), &factors->L)); 1749aac854edSJunchao Zhang PetscCall(MatTranspose(factors->L, MAT_INITIAL_MATRIX, &factors->Lt)); 1750aac854edSJunchao Zhang 1751aac854edSJunchao Zhang seq = static_cast<Mat_SeqAIJ *>(factors->Lt->data); 1752aac854edSJunchao Zhang factors->iLt_h = MatRowMapKokkosViewHost(seq->i, n + 1); 1753aac854edSJunchao Zhang factors->jLt_h = MatColIdxKokkosViewHost(seq->j, seq->nz); 1754aac854edSJunchao Zhang factors->aLt_h = MatScalarKokkosViewHost(seq->a, seq->nz); 1755aac854edSJunchao Zhang } else { 1756aac854edSJunchao Zhang PetscCall(MatTranspose(factors->L, MAT_REUSE_MATRIX, &factors->Lt)); // Matrix Lt' data is aliased with {i, j, a}Lt_h 1757aac854edSJunchao Zhang } 1758aac854edSJunchao Zhang // Copy Lt from host to device 1759aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->iLt_d, factors->iLt_h)); 1760aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->jLt_d, factors->jLt_h)); 1761aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->aLt_d, factors->aLt_h)); 1762aac854edSJunchao Zhang } else { // If L was computed on device, we also compute the transpose there 1763aac854edSJunchao Zhang // TODO: KK transpose_matrix() does not sort column indices, however cusparse requires sorted indices. We have to sort the indices, until KK provides finer control options. 1764aac854edSJunchao Zhang PetscCallCXX(transpose_matrix<ConstMatRowMapKokkosView, ConstMatColIdxKokkosView, ConstMatScalarKokkosView, MatRowMapKokkosView, MatColIdxKokkosView, MatScalarKokkosView, MatRowMapKokkosView, DefaultExecutionSpace>(n, n, factors->iL_d, 1765aac854edSJunchao Zhang factors->jL_d, factors->aL_d, 1766aac854edSJunchao Zhang factors->iLt_d, factors->jLt_d, 1767aac854edSJunchao Zhang factors->aLt_d)); 1768aac854edSJunchao Zhang PetscCallCXX(sort_crs_matrix<DefaultExecutionSpace, MatRowMapKokkosView, MatColIdxKokkosView, MatScalarKokkosView>(factors->iLt_d, factors->jLt_d, factors->aLt_d)); 1769aac854edSJunchao Zhang } 1770aac854edSJunchao Zhang PetscCallCXX(sptrsv_symbolic(&factors->khLt, factors->iLt_d, factors->jLt_d, factors->aLt_d)); 1771aac854edSJunchao Zhang } 1772aac854edSJunchao Zhang 177386a27549SJunchao Zhang factors->transpose_updated = PETSC_TRUE; 177486a27549SJunchao Zhang } 17753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 177686a27549SJunchao Zhang } 177786a27549SJunchao Zhang 1778aac854edSJunchao Zhang // Solve Ax = b, with RAR = U^T D U, where R is the row (and col) permutation matrix on A. 1779aac854edSJunchao Zhang // R is represented by rowperm in factors. If R is identity (i.e, no reordering), then rowperm is empty. 1780aac854edSJunchao Zhang static PetscErrorCode MatSolve_SeqAIJKokkos_Cholesky(Mat A, Vec bb, Vec xx) 1781d71ae5a4SJacob Faibussowitsch { 1782aac854edSJunchao Zhang auto exec = PetscGetKokkosExecutionSpace(); 178386a27549SJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)A->spptr; 1784aac854edSJunchao Zhang PetscInt m = A->rmap->n; 1785aac854edSJunchao Zhang PetscScalarKokkosView D = factors->D_d; 1786aac854edSJunchao Zhang PetscScalarKokkosView X, Y, B; // alias 1787aac854edSJunchao Zhang ConstPetscScalarKokkosView b; 1788aac854edSJunchao Zhang PetscScalarKokkosView x; 1789aac854edSJunchao Zhang PetscIntKokkosView &rowperm = factors->rowperm; 1790aac854edSJunchao Zhang PetscBool identity = rowperm.extent(0) ? PETSC_FALSE : PETSC_TRUE; 179186a27549SJunchao Zhang 179286a27549SJunchao Zhang PetscFunctionBegin; 17939566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 1794aac854edSJunchao Zhang PetscCall(MatSeqAIJKokkosSolveCheck(A)); // for UX = T 1795aac854edSJunchao Zhang PetscCall(MatSeqAIJKokkosTransposeSolveCheck(A)); // for U^T Y = B 1796aac854edSJunchao Zhang PetscCall(VecGetKokkosView(bb, &b)); 1797aac854edSJunchao Zhang PetscCall(VecGetKokkosViewWrite(xx, &x)); 1798aac854edSJunchao Zhang 1799aac854edSJunchao Zhang // Solve U^T Y = B 1800aac854edSJunchao Zhang if (identity) { // Reorder b with the row permutation 1801aac854edSJunchao Zhang B = PetscScalarKokkosView(const_cast<PetscScalar *>(b.data()), b.extent(0)); 1802aac854edSJunchao Zhang Y = factors->workVector; 1803aac854edSJunchao Zhang } else { 1804aac854edSJunchao Zhang B = factors->workVector; 1805aac854edSJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, m), KOKKOS_LAMBDA(const PetscInt i) { B(i) = b(rowperm(i)); })); 1806aac854edSJunchao Zhang Y = x; 1807aac854edSJunchao Zhang } 1808aac854edSJunchao Zhang PetscCallCXX(sptrsv_solve(exec, &factors->khUt, factors->iUt_d, factors->jUt_d, factors->aUt_d, B, Y)); 1809aac854edSJunchao Zhang 1810aac854edSJunchao Zhang // Solve diag(D) Y' = Y. 1811aac854edSJunchao Zhang // Actually just do Y' = Y*D since D is already inverted in MatCholeskyFactorNumeric_SeqAIJ(). It is basically a vector element-wise multiplication. 1812aac854edSJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, m), KOKKOS_LAMBDA(const PetscInt i) { Y(i) = Y(i) * D(i); })); 1813aac854edSJunchao Zhang 1814aac854edSJunchao Zhang // Solve UX = Y 1815aac854edSJunchao Zhang if (identity) { 1816aac854edSJunchao Zhang X = x; 1817aac854edSJunchao Zhang } else { 1818aac854edSJunchao Zhang X = factors->workVector; // B is not needed anymore 1819aac854edSJunchao Zhang } 1820aac854edSJunchao Zhang PetscCallCXX(sptrsv_solve(exec, &factors->khU, factors->iU_d, factors->jU_d, factors->aU_d, Y, X)); 1821aac854edSJunchao Zhang 1822aac854edSJunchao Zhang // Reorder X with the inverse column (row) permutation 1823aac854edSJunchao Zhang if (!identity) { 1824aac854edSJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, m), KOKKOS_LAMBDA(const PetscInt i) { x(rowperm(i)) = X(i); })); 1825aac854edSJunchao Zhang } 1826aac854edSJunchao Zhang 1827aac854edSJunchao Zhang PetscCall(VecRestoreKokkosView(bb, &b)); 1828aac854edSJunchao Zhang PetscCall(VecRestoreKokkosViewWrite(xx, &x)); 18299566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 18303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 183186a27549SJunchao Zhang } 183286a27549SJunchao Zhang 1833aac854edSJunchao Zhang // Solve Ax = b, with RAC = LU, where R and C are row and col permutation matrices on A respectively. 1834aac854edSJunchao Zhang // R and C are represented by rowperm and colperm in factors. 1835aac854edSJunchao Zhang // If R or C is identity (i.e, no reordering), then rowperm or colperm is empty. 1836aac854edSJunchao Zhang static PetscErrorCode MatSolve_SeqAIJKokkos_LU(Mat A, Vec bb, Vec xx) 1837d71ae5a4SJacob Faibussowitsch { 1838aac854edSJunchao Zhang auto exec = PetscGetKokkosExecutionSpace(); 183986a27549SJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)A->spptr; 1840aac854edSJunchao Zhang PetscInt m = A->rmap->n; 1841aac854edSJunchao Zhang PetscScalarKokkosView X, Y, B; // alias 1842aac854edSJunchao Zhang ConstPetscScalarKokkosView b; 1843aac854edSJunchao Zhang PetscScalarKokkosView x; 1844aac854edSJunchao Zhang PetscIntKokkosView &rowperm = factors->rowperm; 1845aac854edSJunchao Zhang PetscIntKokkosView &colperm = factors->colperm; 1846aac854edSJunchao Zhang PetscBool row_identity = rowperm.extent(0) ? PETSC_FALSE : PETSC_TRUE; 1847aac854edSJunchao Zhang PetscBool col_identity = colperm.extent(0) ? PETSC_FALSE : PETSC_TRUE; 184886a27549SJunchao Zhang 184986a27549SJunchao Zhang PetscFunctionBegin; 18509566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 1851aac854edSJunchao Zhang PetscCall(MatSeqAIJKokkosSolveCheck(A)); 1852aac854edSJunchao Zhang PetscCall(VecGetKokkosView(bb, &b)); 1853aac854edSJunchao Zhang PetscCall(VecGetKokkosViewWrite(xx, &x)); 185486a27549SJunchao Zhang 1855aac854edSJunchao Zhang // Solve L Y = B (i.e., L (U C^- x) = R b). R b indicates applying the row permutation on b. 1856aac854edSJunchao Zhang if (row_identity) { 1857aac854edSJunchao Zhang B = PetscScalarKokkosView(const_cast<PetscScalar *>(b.data()), b.extent(0)); 1858aac854edSJunchao Zhang Y = factors->workVector; 1859aac854edSJunchao Zhang } else { 1860aac854edSJunchao Zhang B = factors->workVector; 1861aac854edSJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, m), KOKKOS_LAMBDA(const PetscInt i) { B(i) = b(rowperm(i)); })); 1862aac854edSJunchao Zhang Y = x; 1863aac854edSJunchao Zhang } 1864aac854edSJunchao Zhang PetscCallCXX(sptrsv_solve(exec, &factors->khL, factors->iL_d, factors->jL_d, factors->aL_d, B, Y)); 1865aac854edSJunchao Zhang 1866aac854edSJunchao Zhang // Solve U C^- x = Y 1867aac854edSJunchao Zhang if (col_identity) { 1868aac854edSJunchao Zhang X = x; 1869aac854edSJunchao Zhang } else { 1870aac854edSJunchao Zhang X = factors->workVector; 1871aac854edSJunchao Zhang } 1872aac854edSJunchao Zhang PetscCallCXX(sptrsv_solve(exec, &factors->khU, factors->iU_d, factors->jU_d, factors->aU_d, Y, X)); 1873aac854edSJunchao Zhang 1874aac854edSJunchao Zhang // x = C X; Reorder X with the inverse col permutation 1875aac854edSJunchao Zhang if (!col_identity) { 1876aac854edSJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, m), KOKKOS_LAMBDA(const PetscInt i) { x(colperm(i)) = X(i); })); 1877aac854edSJunchao Zhang } 1878aac854edSJunchao Zhang 1879aac854edSJunchao Zhang PetscCall(VecRestoreKokkosView(bb, &b)); 1880aac854edSJunchao Zhang PetscCall(VecRestoreKokkosViewWrite(xx, &x)); 18819566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 18823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188386a27549SJunchao Zhang } 188486a27549SJunchao Zhang 1885aac854edSJunchao Zhang // Solve A^T x = b, with RAC = LU, where R and C are row and col permutation matrices on A respectively. 1886aac854edSJunchao Zhang // R and C are represented by rowperm and colperm in factors. 1887aac854edSJunchao Zhang // If R or C is identity (i.e, no reordering), then rowperm or colperm is empty. 1888aac854edSJunchao Zhang // A = R^-1 L U C^-1, so A^T = C^-T U^T L^T R^-T. But since C^- = C^T, R^- = R^T, we have A^T = C U^T L^T R. 1889aac854edSJunchao Zhang static PetscErrorCode MatSolveTranspose_SeqAIJKokkos_LU(Mat A, Vec bb, Vec xx) 1890aac854edSJunchao Zhang { 1891aac854edSJunchao Zhang auto exec = PetscGetKokkosExecutionSpace(); 1892aac854edSJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)A->spptr; 1893aac854edSJunchao Zhang PetscInt m = A->rmap->n; 1894aac854edSJunchao Zhang PetscScalarKokkosView X, Y, B; // alias 1895aac854edSJunchao Zhang ConstPetscScalarKokkosView b; 1896aac854edSJunchao Zhang PetscScalarKokkosView x; 1897aac854edSJunchao Zhang PetscIntKokkosView &rowperm = factors->rowperm; 1898aac854edSJunchao Zhang PetscIntKokkosView &colperm = factors->colperm; 1899aac854edSJunchao Zhang PetscBool row_identity = rowperm.extent(0) ? PETSC_FALSE : PETSC_TRUE; 1900aac854edSJunchao Zhang PetscBool col_identity = colperm.extent(0) ? PETSC_FALSE : PETSC_TRUE; 1901aac854edSJunchao Zhang 1902aac854edSJunchao Zhang PetscFunctionBegin; 1903aac854edSJunchao Zhang PetscCall(PetscLogGpuTimeBegin()); 1904aac854edSJunchao Zhang PetscCall(MatSeqAIJKokkosTransposeSolveCheck(A)); // Update L^T, U^T if needed, and do sptrsv symbolic for L^T, U^T 1905aac854edSJunchao Zhang PetscCall(VecGetKokkosView(bb, &b)); 1906aac854edSJunchao Zhang PetscCall(VecGetKokkosViewWrite(xx, &x)); 1907aac854edSJunchao Zhang 1908aac854edSJunchao Zhang // Solve U^T Y = B (i.e., U^T (L^T R x) = C^- b). Note C^- b = C^T b, which means applying the column permutation on b. 1909aac854edSJunchao Zhang if (col_identity) { // Reorder b with the col permutation 1910aac854edSJunchao Zhang B = PetscScalarKokkosView(const_cast<PetscScalar *>(b.data()), b.extent(0)); 1911aac854edSJunchao Zhang Y = factors->workVector; 1912aac854edSJunchao Zhang } else { 1913aac854edSJunchao Zhang B = factors->workVector; 1914aac854edSJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, m), KOKKOS_LAMBDA(const PetscInt i) { B(i) = b(colperm(i)); })); 1915aac854edSJunchao Zhang Y = x; 1916aac854edSJunchao Zhang } 1917aac854edSJunchao Zhang PetscCallCXX(sptrsv_solve(exec, &factors->khUt, factors->iUt_d, factors->jUt_d, factors->aUt_d, B, Y)); 1918aac854edSJunchao Zhang 1919aac854edSJunchao Zhang // Solve L^T X = Y 1920aac854edSJunchao Zhang if (row_identity) { 1921aac854edSJunchao Zhang X = x; 1922aac854edSJunchao Zhang } else { 1923aac854edSJunchao Zhang X = factors->workVector; 1924aac854edSJunchao Zhang } 1925aac854edSJunchao Zhang PetscCallCXX(sptrsv_solve(exec, &factors->khLt, factors->iLt_d, factors->jLt_d, factors->aLt_d, Y, X)); 1926aac854edSJunchao Zhang 1927aac854edSJunchao Zhang // x = R^- X = R^T X; Reorder X with the inverse row permutation 1928aac854edSJunchao Zhang if (!row_identity) { 1929aac854edSJunchao Zhang PetscCallCXX(Kokkos::parallel_for(Kokkos::RangePolicy<>(exec, 0, m), KOKKOS_LAMBDA(const PetscInt i) { x(rowperm(i)) = X(i); })); 1930aac854edSJunchao Zhang } 1931aac854edSJunchao Zhang 1932aac854edSJunchao Zhang PetscCall(VecRestoreKokkosView(bb, &b)); 1933aac854edSJunchao Zhang PetscCall(VecRestoreKokkosViewWrite(xx, &x)); 1934aac854edSJunchao Zhang PetscCall(PetscLogGpuTimeEnd()); 1935aac854edSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 1936aac854edSJunchao Zhang } 1937aac854edSJunchao Zhang 1938aac854edSJunchao Zhang static PetscErrorCode MatLUFactorNumeric_SeqAIJKokkos(Mat B, Mat A, const MatFactorInfo *info) 1939aac854edSJunchao Zhang { 1940aac854edSJunchao Zhang PetscFunctionBegin; 1941aac854edSJunchao Zhang PetscCall(MatSeqAIJKokkosSyncHost(A)); 1942aac854edSJunchao Zhang PetscCall(MatLUFactorNumeric_SeqAIJ(B, A, info)); 1943aac854edSJunchao Zhang 1944aac854edSJunchao Zhang if (!info->solveonhost) { // if solve on host, then we don't need to copy L, U to device 1945aac854edSJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)B->spptr; 1946aac854edSJunchao Zhang Mat_SeqAIJ *b = static_cast<Mat_SeqAIJ *>(B->data); 1947aac854edSJunchao Zhang const PetscInt *Bi = b->i, *Bj = b->j, *Bdiag = b->diag; 1948aac854edSJunchao Zhang const MatScalar *Ba = b->a; 1949aac854edSJunchao Zhang PetscInt m = B->rmap->n, n = B->cmap->n; 1950aac854edSJunchao Zhang 1951aac854edSJunchao Zhang if (factors->iL_h.extent(0) == 0) { // Allocate memory and copy the L, U structure for the first time 1952aac854edSJunchao Zhang // Allocate memory and copy the structure 1953aac854edSJunchao Zhang factors->iL_h = MatRowMapKokkosViewHost(NoInit("iL_h"), m + 1); 1954aac854edSJunchao Zhang factors->jL_h = MatColIdxKokkosViewHost(NoInit("jL_h"), (Bi[m] - Bi[0]) + m); // + the diagonal entries 1955aac854edSJunchao Zhang factors->aL_h = MatScalarKokkosViewHost(NoInit("aL_h"), (Bi[m] - Bi[0]) + m); 1956aac854edSJunchao Zhang factors->iU_h = MatRowMapKokkosViewHost(NoInit("iU_h"), m + 1); 1957aac854edSJunchao Zhang factors->jU_h = MatColIdxKokkosViewHost(NoInit("jU_h"), (Bdiag[0] - Bdiag[m])); 1958aac854edSJunchao Zhang factors->aU_h = MatScalarKokkosViewHost(NoInit("aU_h"), (Bdiag[0] - Bdiag[m])); 1959aac854edSJunchao Zhang 1960aac854edSJunchao Zhang PetscInt *Li = factors->iL_h.data(); 1961aac854edSJunchao Zhang PetscInt *Lj = factors->jL_h.data(); 1962aac854edSJunchao Zhang PetscInt *Ui = factors->iU_h.data(); 1963aac854edSJunchao Zhang PetscInt *Uj = factors->jU_h.data(); 1964aac854edSJunchao Zhang 1965aac854edSJunchao Zhang Li[0] = Ui[0] = 0; 1966aac854edSJunchao Zhang for (PetscInt i = 0; i < m; i++) { 1967aac854edSJunchao Zhang PetscInt llen = Bi[i + 1] - Bi[i]; // exclusive of the diagonal entry 1968aac854edSJunchao Zhang PetscInt ulen = Bdiag[i] - Bdiag[i + 1]; // inclusive of the diagonal entry 1969aac854edSJunchao Zhang 1970aac854edSJunchao Zhang PetscArraycpy(Lj + Li[i], Bj + Bi[i], llen); // entries of L on the left of the diagonal 1971aac854edSJunchao Zhang Lj[Li[i] + llen] = i; // diagonal entry of L 1972aac854edSJunchao Zhang 1973aac854edSJunchao Zhang Uj[Ui[i]] = i; // diagonal entry of U 1974aac854edSJunchao Zhang PetscArraycpy(Uj + Ui[i] + 1, Bj + Bdiag[i + 1] + 1, ulen - 1); // entries of U on the right of the diagonal 1975aac854edSJunchao Zhang 1976aac854edSJunchao Zhang Li[i + 1] = Li[i] + llen + 1; 1977aac854edSJunchao Zhang Ui[i + 1] = Ui[i] + ulen; 1978aac854edSJunchao Zhang } 1979aac854edSJunchao Zhang 1980aac854edSJunchao Zhang factors->iL_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), factors->iL_h); 1981aac854edSJunchao Zhang factors->jL_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), factors->jL_h); 1982aac854edSJunchao Zhang factors->iU_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), factors->iU_h); 1983aac854edSJunchao Zhang factors->jU_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), factors->jU_h); 1984aac854edSJunchao Zhang factors->aL_d = Kokkos::create_mirror_view(DefaultMemorySpace(), factors->aL_h); 1985aac854edSJunchao Zhang factors->aU_d = Kokkos::create_mirror_view(DefaultMemorySpace(), factors->aU_h); 1986aac854edSJunchao Zhang 1987aac854edSJunchao Zhang // Copy row/col permutation to device 1988aac854edSJunchao Zhang IS rowperm = ((Mat_SeqAIJ *)B->data)->row; 1989aac854edSJunchao Zhang PetscBool row_identity; 1990aac854edSJunchao Zhang PetscCall(ISIdentity(rowperm, &row_identity)); 1991aac854edSJunchao Zhang if (!row_identity) { 1992aac854edSJunchao Zhang const PetscInt *ip; 1993aac854edSJunchao Zhang 1994aac854edSJunchao Zhang PetscCall(ISGetIndices(rowperm, &ip)); 1995aac854edSJunchao Zhang factors->rowperm = PetscIntKokkosView(NoInit("rowperm"), m); 1996aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->rowperm, PetscIntKokkosViewHost(const_cast<PetscInt *>(ip), m))); 1997aac854edSJunchao Zhang PetscCall(ISRestoreIndices(rowperm, &ip)); 1998aac854edSJunchao Zhang PetscCall(PetscLogCpuToGpu(m * sizeof(PetscInt))); 1999aac854edSJunchao Zhang } 2000aac854edSJunchao Zhang 2001aac854edSJunchao Zhang IS colperm = ((Mat_SeqAIJ *)B->data)->col; 2002aac854edSJunchao Zhang PetscBool col_identity; 2003aac854edSJunchao Zhang PetscCall(ISIdentity(colperm, &col_identity)); 2004aac854edSJunchao Zhang if (!col_identity) { 2005aac854edSJunchao Zhang const PetscInt *ip; 2006aac854edSJunchao Zhang 2007aac854edSJunchao Zhang PetscCall(ISGetIndices(colperm, &ip)); 2008aac854edSJunchao Zhang factors->colperm = PetscIntKokkosView(NoInit("colperm"), n); 2009aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->colperm, PetscIntKokkosViewHost(const_cast<PetscInt *>(ip), n))); 2010aac854edSJunchao Zhang PetscCall(ISRestoreIndices(colperm, &ip)); 2011aac854edSJunchao Zhang PetscCall(PetscLogCpuToGpu(n * sizeof(PetscInt))); 2012aac854edSJunchao Zhang } 2013aac854edSJunchao Zhang 2014aac854edSJunchao Zhang /* Create sptrsv handles for L, U and their transpose */ 2015aac854edSJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 2016aac854edSJunchao Zhang auto sptrsv_alg = SPTRSVAlgorithm::SPTRSV_CUSPARSE; 2017aac854edSJunchao Zhang #else 2018aac854edSJunchao Zhang auto sptrsv_alg = SPTRSVAlgorithm::SEQLVLSCHD_TP1; 2019aac854edSJunchao Zhang #endif 2020aac854edSJunchao Zhang factors->khL.create_sptrsv_handle(sptrsv_alg, m, true /* L is lower tri */); 2021aac854edSJunchao Zhang factors->khU.create_sptrsv_handle(sptrsv_alg, m, false /* U is not lower tri */); 2022aac854edSJunchao Zhang factors->khLt.create_sptrsv_handle(sptrsv_alg, m, false /* L^T is not lower tri */); 2023aac854edSJunchao Zhang factors->khUt.create_sptrsv_handle(sptrsv_alg, m, true /* U^T is lower tri */); 2024aac854edSJunchao Zhang } 2025aac854edSJunchao Zhang 2026aac854edSJunchao Zhang // Copy the value 2027aac854edSJunchao Zhang for (PetscInt i = 0; i < m; i++) { 2028aac854edSJunchao Zhang PetscInt llen = Bi[i + 1] - Bi[i]; 2029aac854edSJunchao Zhang PetscInt ulen = Bdiag[i] - Bdiag[i + 1]; 2030aac854edSJunchao Zhang const PetscInt *Li = factors->iL_h.data(); 2031aac854edSJunchao Zhang const PetscInt *Ui = factors->iU_h.data(); 2032aac854edSJunchao Zhang 2033aac854edSJunchao Zhang PetscScalar *La = factors->aL_h.data(); 2034aac854edSJunchao Zhang PetscScalar *Ua = factors->aU_h.data(); 2035aac854edSJunchao Zhang 2036aac854edSJunchao Zhang PetscArraycpy(La + Li[i], Ba + Bi[i], llen); // entries of L 2037aac854edSJunchao Zhang La[Li[i] + llen] = 1.0; // diagonal entry 2038aac854edSJunchao Zhang 2039aac854edSJunchao Zhang Ua[Ui[i]] = 1.0 / Ba[Bdiag[i]]; // diagonal entry 2040aac854edSJunchao Zhang PetscArraycpy(Ua + Ui[i] + 1, Ba + Bdiag[i + 1] + 1, ulen - 1); // entries of U 2041aac854edSJunchao Zhang } 2042aac854edSJunchao Zhang 2043aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->aL_d, factors->aL_h)); 2044aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->aU_d, factors->aU_h)); 2045aac854edSJunchao Zhang // Once the factors' values have changed, we need to update their transpose and redo sptrsv symbolic 2046aac854edSJunchao Zhang factors->transpose_updated = PETSC_FALSE; 2047aac854edSJunchao Zhang factors->sptrsv_symbolic_completed = PETSC_FALSE; 2048aac854edSJunchao Zhang 2049aac854edSJunchao Zhang B->ops->solve = MatSolve_SeqAIJKokkos_LU; 2050aac854edSJunchao Zhang B->ops->solvetranspose = MatSolveTranspose_SeqAIJKokkos_LU; 2051aac854edSJunchao Zhang } 2052aac854edSJunchao Zhang 2053aac854edSJunchao Zhang B->ops->matsolve = NULL; 2054aac854edSJunchao Zhang B->ops->matsolvetranspose = NULL; 2055aac854edSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 2056aac854edSJunchao Zhang } 2057aac854edSJunchao Zhang 2058aac854edSJunchao Zhang static PetscErrorCode MatILUFactorNumeric_SeqAIJKokkos_ILU0(Mat B, Mat A, const MatFactorInfo *info) 2059d71ae5a4SJacob Faibussowitsch { 206086a27549SJunchao Zhang Mat_SeqAIJKokkos *aijkok = (Mat_SeqAIJKokkos *)A->spptr; 206186a27549SJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)B->spptr; 206286a27549SJunchao Zhang PetscInt fill_lev = info->levels; 206386a27549SJunchao Zhang 206486a27549SJunchao Zhang PetscFunctionBegin; 20659566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 2066aac854edSJunchao Zhang PetscCheck(!info->factoronhost, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "MatFactorInfo.factoronhost should be false"); 20679566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 2068076ba34aSJunchao Zhang 2069076ba34aSJunchao Zhang auto a_d = aijkok->a_dual.view_device(); 2070076ba34aSJunchao Zhang auto i_d = aijkok->i_dual.view_device(); 2071076ba34aSJunchao Zhang auto j_d = aijkok->j_dual.view_device(); 2072076ba34aSJunchao Zhang 2073aac854edSJunchao Zhang PetscCallCXX(spiluk_numeric(&factors->kh, fill_lev, i_d, j_d, a_d, factors->iL_d, factors->jL_d, factors->aL_d, factors->iU_d, factors->jU_d, factors->aU_d)); 207486a27549SJunchao Zhang 207586a27549SJunchao Zhang B->assembled = PETSC_TRUE; 207686a27549SJunchao Zhang B->preallocated = PETSC_TRUE; 2077aac854edSJunchao Zhang B->ops->solve = MatSolve_SeqAIJKokkos_LU; 2078aac854edSJunchao Zhang B->ops->solvetranspose = MatSolveTranspose_SeqAIJKokkos_LU; 207986a27549SJunchao Zhang B->ops->matsolve = NULL; 208086a27549SJunchao Zhang B->ops->matsolvetranspose = NULL; 208186a27549SJunchao Zhang 208286a27549SJunchao Zhang /* Once the factors' value changed, we need to update their transpose and sptrsv handle */ 208386a27549SJunchao Zhang factors->transpose_updated = PETSC_FALSE; 208486a27549SJunchao Zhang factors->sptrsv_symbolic_completed = PETSC_FALSE; 2085eeadb341SJunchao Zhang /* TODO: log flops, but how to know that? */ 20869566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 20873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208886a27549SJunchao Zhang } 208986a27549SJunchao Zhang 2090aac854edSJunchao Zhang // Use KK's spiluk_symbolic() to do ILU0 symbolic factorization, with no row/col reordering 2091aac854edSJunchao Zhang static PetscErrorCode MatILUFactorSymbolic_SeqAIJKokkos_ILU0(Mat B, Mat A, IS, IS, const MatFactorInfo *info) 2092d71ae5a4SJacob Faibussowitsch { 209386a27549SJunchao Zhang Mat_SeqAIJKokkos *aijkok; 209486a27549SJunchao Zhang Mat_SeqAIJ *b; 209586a27549SJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)B->spptr; 209686a27549SJunchao Zhang PetscInt fill_lev = info->levels; 209786a27549SJunchao Zhang PetscInt nnzA = ((Mat_SeqAIJ *)A->data)->nz, nnzL, nnzU; 209886a27549SJunchao Zhang PetscInt n = A->rmap->n; 209986a27549SJunchao Zhang 210086a27549SJunchao Zhang PetscFunctionBegin; 2101aac854edSJunchao Zhang PetscCheck(!info->factoronhost, PetscObjectComm((PetscObject)A), PETSC_ERR_PLIB, "MatFactorInfo's factoronhost should be false as we are doing it on device right now"); 21029566063dSJacob Faibussowitsch PetscCall(MatSeqAIJKokkosSyncDevice(A)); 210386a27549SJunchao Zhang 210486a27549SJunchao Zhang /* Create a spiluk handle and then do symbolic factorization */ 210586a27549SJunchao Zhang nnzL = nnzU = PetscRealIntMultTruncate(info->fill, nnzA); 2106aac854edSJunchao Zhang factors->kh.create_spiluk_handle(SPILUKAlgorithm::SEQLVLSCHD_TP1, n, nnzL, nnzU); 210786a27549SJunchao Zhang 210886a27549SJunchao Zhang auto spiluk_handle = factors->kh.get_spiluk_handle(); 210986a27549SJunchao Zhang 211086a27549SJunchao Zhang Kokkos::realloc(factors->iL_d, n + 1); /* Free old arrays and realloc */ 211186a27549SJunchao Zhang Kokkos::realloc(factors->jL_d, spiluk_handle->get_nnzL()); 211286a27549SJunchao Zhang Kokkos::realloc(factors->iU_d, n + 1); 211386a27549SJunchao Zhang Kokkos::realloc(factors->jU_d, spiluk_handle->get_nnzU()); 211486a27549SJunchao Zhang 211586a27549SJunchao Zhang aijkok = (Mat_SeqAIJKokkos *)A->spptr; 2116076ba34aSJunchao Zhang auto i_d = aijkok->i_dual.view_device(); 2117076ba34aSJunchao Zhang auto j_d = aijkok->j_dual.view_device(); 2118aac854edSJunchao Zhang PetscCallCXX(spiluk_symbolic(&factors->kh, fill_lev, i_d, j_d, factors->iL_d, factors->jL_d, factors->iU_d, factors->jU_d)); 211986a27549SJunchao Zhang /* TODO: if spiluk_symbolic is asynchronous, do we need to sync before calling get_nnzL()? */ 212086a27549SJunchao Zhang 212186a27549SJunchao Zhang Kokkos::resize(factors->jL_d, spiluk_handle->get_nnzL()); /* Shrink or expand, and retain old value */ 212286a27549SJunchao Zhang Kokkos::resize(factors->jU_d, spiluk_handle->get_nnzU()); 212386a27549SJunchao Zhang Kokkos::realloc(factors->aL_d, spiluk_handle->get_nnzL()); /* No need to retain old value */ 212486a27549SJunchao Zhang Kokkos::realloc(factors->aU_d, spiluk_handle->get_nnzU()); 212586a27549SJunchao Zhang 212686a27549SJunchao Zhang /* TODO: add options to select sptrsv algorithms */ 212786a27549SJunchao Zhang /* Create sptrsv handles for L, U and their transpose */ 212886a27549SJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 2129aac854edSJunchao Zhang auto sptrsv_alg = SPTRSVAlgorithm::SPTRSV_CUSPARSE; 213086a27549SJunchao Zhang #else 2131aac854edSJunchao Zhang auto sptrsv_alg = SPTRSVAlgorithm::SEQLVLSCHD_TP1; 213286a27549SJunchao Zhang #endif 213386a27549SJunchao Zhang 213486a27549SJunchao Zhang factors->khL.create_sptrsv_handle(sptrsv_alg, n, true /* L is lower tri */); 213586a27549SJunchao Zhang factors->khU.create_sptrsv_handle(sptrsv_alg, n, false /* U is not lower tri */); 213686a27549SJunchao Zhang factors->khLt.create_sptrsv_handle(sptrsv_alg, n, false /* L^T is not lower tri */); 213786a27549SJunchao Zhang factors->khUt.create_sptrsv_handle(sptrsv_alg, n, true /* U^T is lower tri */); 213886a27549SJunchao Zhang 213986a27549SJunchao Zhang /* Fill fields of the factor matrix B */ 21409566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(B, MAT_SKIP_ALLOCATION, NULL)); 214186a27549SJunchao Zhang b = (Mat_SeqAIJ *)B->data; 214286a27549SJunchao Zhang b->nz = b->maxnz = spiluk_handle->get_nnzL() + spiluk_handle->get_nnzU(); 214386a27549SJunchao Zhang B->info.fill_ratio_given = info->fill; 2144a1e4e190SStefano Zampini B->info.fill_ratio_needed = nnzA > 0 ? ((PetscReal)b->nz) / ((PetscReal)nnzA) : 1.0; 214586a27549SJunchao Zhang 2146aac854edSJunchao Zhang B->ops->lufactornumeric = MatILUFactorNumeric_SeqAIJKokkos_ILU0; 21473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2148930e68a5SMark Adams } 2149930e68a5SMark Adams 2150aac854edSJunchao Zhang static PetscErrorCode MatLUFactorSymbolic_SeqAIJKokkos(Mat B, Mat A, IS isrow, IS iscol, const MatFactorInfo *info) 2151aac854edSJunchao Zhang { 2152aac854edSJunchao Zhang PetscFunctionBegin; 2153aac854edSJunchao Zhang PetscCall(MatLUFactorSymbolic_SeqAIJ(B, A, isrow, iscol, info)); 2154aac854edSJunchao Zhang PetscCheck(!B->spptr, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Expected a NULL spptr"); 2155aac854edSJunchao Zhang PetscCallCXX(B->spptr = new Mat_SeqAIJKokkosTriFactors(B->rmap->n)); 2156aac854edSJunchao Zhang B->ops->lufactornumeric = MatLUFactorNumeric_SeqAIJKokkos; 2157aac854edSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 2158aac854edSJunchao Zhang } 2159aac854edSJunchao Zhang 2160aac854edSJunchao Zhang static PetscErrorCode MatILUFactorSymbolic_SeqAIJKokkos(Mat B, Mat A, IS isrow, IS iscol, const MatFactorInfo *info) 2161aac854edSJunchao Zhang { 2162aac854edSJunchao Zhang PetscBool row_identity = PETSC_FALSE, col_identity = PETSC_FALSE; 2163aac854edSJunchao Zhang 2164aac854edSJunchao Zhang PetscFunctionBegin; 2165aac854edSJunchao Zhang if (!info->factoronhost) { 2166aac854edSJunchao Zhang PetscCall(ISIdentity(isrow, &row_identity)); 2167aac854edSJunchao Zhang PetscCall(ISIdentity(iscol, &col_identity)); 2168aac854edSJunchao Zhang } 2169aac854edSJunchao Zhang 2170aac854edSJunchao Zhang PetscCheck(!B->spptr, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Expected a NULL spptr"); 2171aac854edSJunchao Zhang PetscCallCXX(B->spptr = new Mat_SeqAIJKokkosTriFactors(B->rmap->n)); 2172aac854edSJunchao Zhang 2173aac854edSJunchao Zhang if (!info->factoronhost && !info->levels && row_identity && col_identity) { // if level 0 and no reordering 2174aac854edSJunchao Zhang PetscCall(MatILUFactorSymbolic_SeqAIJKokkos_ILU0(B, A, isrow, iscol, info)); 2175aac854edSJunchao Zhang } else { 2176aac854edSJunchao Zhang PetscCall(MatILUFactorSymbolic_SeqAIJ(B, A, isrow, iscol, info)); // otherwise, use PETSc's ILU on host 2177aac854edSJunchao Zhang B->ops->lufactornumeric = MatLUFactorNumeric_SeqAIJKokkos; 2178aac854edSJunchao Zhang } 2179aac854edSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 2180aac854edSJunchao Zhang } 2181aac854edSJunchao Zhang 2182aac854edSJunchao Zhang static PetscErrorCode MatCholeskyFactorNumeric_SeqAIJKokkos(Mat B, Mat A, const MatFactorInfo *info) 2183aac854edSJunchao Zhang { 2184aac854edSJunchao Zhang PetscFunctionBegin; 2185aac854edSJunchao Zhang PetscCall(MatSeqAIJKokkosSyncHost(A)); 2186aac854edSJunchao Zhang PetscCall(MatCholeskyFactorNumeric_SeqAIJ(B, A, info)); 2187aac854edSJunchao Zhang 2188aac854edSJunchao Zhang if (!info->solveonhost) { // if solve on host, then we don't need to copy L, U to device 2189aac854edSJunchao Zhang Mat_SeqAIJKokkosTriFactors *factors = (Mat_SeqAIJKokkosTriFactors *)B->spptr; 2190aac854edSJunchao Zhang Mat_SeqAIJ *b = static_cast<Mat_SeqAIJ *>(B->data); 2191aac854edSJunchao Zhang const PetscInt *Bi = b->i, *Bj = b->j, *Bdiag = b->diag; 2192aac854edSJunchao Zhang const MatScalar *Ba = b->a; 2193aac854edSJunchao Zhang PetscInt m = B->rmap->n; 2194aac854edSJunchao Zhang 2195aac854edSJunchao Zhang if (factors->iU_h.extent(0) == 0) { // First time of numeric factorization 2196aac854edSJunchao Zhang // Allocate memory and copy the structure 2197aac854edSJunchao Zhang factors->iU_h = PetscIntKokkosViewHost(const_cast<PetscInt *>(Bi), m + 1); // wrap Bi as iU_h 2198aac854edSJunchao Zhang factors->jU_h = MatColIdxKokkosViewHost(NoInit("jU_h"), Bi[m]); 2199aac854edSJunchao Zhang factors->aU_h = MatScalarKokkosViewHost(NoInit("aU_h"), Bi[m]); 2200aac854edSJunchao Zhang factors->D_h = MatScalarKokkosViewHost(NoInit("D_h"), m); 2201aac854edSJunchao Zhang factors->aU_d = Kokkos::create_mirror_view(DefaultMemorySpace(), factors->aU_h); 2202aac854edSJunchao Zhang factors->D_d = Kokkos::create_mirror_view(DefaultMemorySpace(), factors->D_h); 2203aac854edSJunchao Zhang 2204aac854edSJunchao Zhang // Build jU_h from the skewed Aj 2205aac854edSJunchao Zhang PetscInt *Uj = factors->jU_h.data(); 2206aac854edSJunchao Zhang for (PetscInt i = 0; i < m; i++) { 2207aac854edSJunchao Zhang PetscInt ulen = Bi[i + 1] - Bi[i]; 2208aac854edSJunchao Zhang Uj[Bi[i]] = i; // diagonal entry 2209aac854edSJunchao Zhang PetscCall(PetscArraycpy(Uj + Bi[i] + 1, Bj + Bi[i], ulen - 1)); // entries of U on the right of the diagonal 2210aac854edSJunchao Zhang } 2211aac854edSJunchao Zhang 2212aac854edSJunchao Zhang // Copy iU, jU to device 2213aac854edSJunchao Zhang PetscCallCXX(factors->iU_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), factors->iU_h)); 2214aac854edSJunchao Zhang PetscCallCXX(factors->jU_d = Kokkos::create_mirror_view_and_copy(DefaultMemorySpace(), factors->jU_h)); 2215aac854edSJunchao Zhang 2216aac854edSJunchao Zhang // Copy row/col permutation to device 2217aac854edSJunchao Zhang IS rowperm = ((Mat_SeqAIJ *)B->data)->row; 2218aac854edSJunchao Zhang PetscBool row_identity; 2219aac854edSJunchao Zhang PetscCall(ISIdentity(rowperm, &row_identity)); 2220aac854edSJunchao Zhang if (!row_identity) { 2221aac854edSJunchao Zhang const PetscInt *ip; 2222aac854edSJunchao Zhang 2223aac854edSJunchao Zhang PetscCall(ISGetIndices(rowperm, &ip)); 2224aac854edSJunchao Zhang PetscCallCXX(factors->rowperm = PetscIntKokkosView(NoInit("rowperm"), m)); 2225aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->rowperm, PetscIntKokkosViewHost(const_cast<PetscInt *>(ip), m))); 2226aac854edSJunchao Zhang PetscCall(ISRestoreIndices(rowperm, &ip)); 2227aac854edSJunchao Zhang PetscCall(PetscLogCpuToGpu(m * sizeof(PetscInt))); 2228aac854edSJunchao Zhang } 2229aac854edSJunchao Zhang 2230aac854edSJunchao Zhang // Create sptrsv handles for U and U^T 2231aac854edSJunchao Zhang #if defined(KOKKOSKERNELS_ENABLE_TPL_CUSPARSE) 2232aac854edSJunchao Zhang auto sptrsv_alg = SPTRSVAlgorithm::SPTRSV_CUSPARSE; 2233aac854edSJunchao Zhang #else 2234aac854edSJunchao Zhang auto sptrsv_alg = SPTRSVAlgorithm::SEQLVLSCHD_TP1; 2235aac854edSJunchao Zhang #endif 2236aac854edSJunchao Zhang factors->khU.create_sptrsv_handle(sptrsv_alg, m, false /* U is not lower tri */); 2237aac854edSJunchao Zhang factors->khUt.create_sptrsv_handle(sptrsv_alg, m, true /* U^T is lower tri */); 2238aac854edSJunchao Zhang } 2239aac854edSJunchao Zhang // These pointers were set MatCholeskyFactorNumeric_SeqAIJ(), so we always need to update them 2240aac854edSJunchao Zhang B->ops->solve = MatSolve_SeqAIJKokkos_Cholesky; 2241aac854edSJunchao Zhang B->ops->solvetranspose = MatSolve_SeqAIJKokkos_Cholesky; 2242aac854edSJunchao Zhang 2243aac854edSJunchao Zhang // Copy the value 2244aac854edSJunchao Zhang PetscScalar *Ua = factors->aU_h.data(); 2245aac854edSJunchao Zhang PetscScalar *D = factors->D_h.data(); 2246aac854edSJunchao Zhang for (PetscInt i = 0; i < m; i++) { 2247aac854edSJunchao Zhang D[i] = Ba[Bdiag[i]]; // actually Aa[Adiag[i]] is the inverse of the diagonal 2248aac854edSJunchao Zhang Ua[Bi[i]] = (PetscScalar)1.0; // set the unit diagonal for U 2249aac854edSJunchao Zhang for (PetscInt k = 0; k < Bi[i + 1] - Bi[i] - 1; k++) Ua[Bi[i] + 1 + k] = -Ba[Bi[i] + k]; 2250aac854edSJunchao Zhang } 2251aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->aU_d, factors->aU_h)); 2252aac854edSJunchao Zhang PetscCallCXX(Kokkos::deep_copy(factors->D_d, factors->D_h)); 2253aac854edSJunchao Zhang 2254aac854edSJunchao Zhang factors->sptrsv_symbolic_completed = PETSC_FALSE; // When numeric value changed, we must do these again 2255aac854edSJunchao Zhang factors->transpose_updated = PETSC_FALSE; 2256aac854edSJunchao Zhang } 2257aac854edSJunchao Zhang 2258aac854edSJunchao Zhang B->ops->matsolve = NULL; 2259aac854edSJunchao Zhang B->ops->matsolvetranspose = NULL; 2260aac854edSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 2261aac854edSJunchao Zhang } 2262aac854edSJunchao Zhang 2263aac854edSJunchao Zhang static PetscErrorCode MatICCFactorSymbolic_SeqAIJKokkos(Mat B, Mat A, IS perm, const MatFactorInfo *info) 2264aac854edSJunchao Zhang { 2265aac854edSJunchao Zhang PetscFunctionBegin; 2266aac854edSJunchao Zhang if (info->solveonhost) { 2267aac854edSJunchao Zhang // If solve on host, we have to change the type, as eventually we need to call MatSolve_SeqSBAIJ_1_NaturalOrdering() etc. 2268aac854edSJunchao Zhang PetscCall(MatSetType(B, MATSEQSBAIJ)); 2269aac854edSJunchao Zhang PetscCall(MatSeqSBAIJSetPreallocation(B, 1, MAT_SKIP_ALLOCATION, NULL)); 2270aac854edSJunchao Zhang } 2271aac854edSJunchao Zhang 2272aac854edSJunchao Zhang PetscCall(MatICCFactorSymbolic_SeqAIJ(B, A, perm, info)); 2273aac854edSJunchao Zhang 2274aac854edSJunchao Zhang if (!info->solveonhost) { 2275bfe80ac4SPierre Jolivet // If solve on device, B is still a MATSEQAIJKOKKOS, so we are good to allocate B->spptr 2276aac854edSJunchao Zhang PetscCheck(!B->spptr, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Expected a NULL spptr"); 2277aac854edSJunchao Zhang PetscCallCXX(B->spptr = new Mat_SeqAIJKokkosTriFactors(B->rmap->n)); 2278aac854edSJunchao Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqAIJKokkos; 2279aac854edSJunchao Zhang } 2280aac854edSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 2281aac854edSJunchao Zhang } 2282aac854edSJunchao Zhang 2283aac854edSJunchao Zhang static PetscErrorCode MatCholeskyFactorSymbolic_SeqAIJKokkos(Mat B, Mat A, IS perm, const MatFactorInfo *info) 2284aac854edSJunchao Zhang { 2285aac854edSJunchao Zhang PetscFunctionBegin; 2286aac854edSJunchao Zhang if (info->solveonhost) { 2287aac854edSJunchao Zhang // If solve on host, we have to change the type, as eventually we need to call MatSolve_SeqSBAIJ_1_NaturalOrdering() etc. 2288aac854edSJunchao Zhang PetscCall(MatSetType(B, MATSEQSBAIJ)); 2289aac854edSJunchao Zhang PetscCall(MatSeqSBAIJSetPreallocation(B, 1, MAT_SKIP_ALLOCATION, NULL)); 2290aac854edSJunchao Zhang } 2291aac854edSJunchao Zhang 2292aac854edSJunchao Zhang PetscCall(MatCholeskyFactorSymbolic_SeqAIJ(B, A, perm, info)); // it sets B's two ISes ((Mat_SeqAIJ*)B->data)->{row, col} to perm 2293aac854edSJunchao Zhang 2294aac854edSJunchao Zhang if (!info->solveonhost) { 2295bfe80ac4SPierre Jolivet // If solve on device, B is still a MATSEQAIJKOKKOS, so we are good to allocate B->spptr 2296aac854edSJunchao Zhang PetscCheck(!B->spptr, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Expected a NULL spptr"); 2297aac854edSJunchao Zhang PetscCallCXX(B->spptr = new Mat_SeqAIJKokkosTriFactors(B->rmap->n)); 2298aac854edSJunchao Zhang B->ops->choleskyfactornumeric = MatCholeskyFactorNumeric_SeqAIJKokkos; 2299aac854edSJunchao Zhang } 2300aac854edSJunchao Zhang PetscFunctionReturn(PETSC_SUCCESS); 2301aac854edSJunchao Zhang } 2302aac854edSJunchao Zhang 2303aac854edSJunchao Zhang // The _Kokkos suffix means we will use Kokkos as a solver for the SeqAIJKokkos matrix 2304aac854edSJunchao Zhang static PetscErrorCode MatFactorGetSolverType_SeqAIJKokkos_Kokkos(Mat A, MatSolverType *type) 2305d71ae5a4SJacob Faibussowitsch { 2306930e68a5SMark Adams PetscFunctionBegin; 2307930e68a5SMark Adams *type = MATSOLVERKOKKOS; 23083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2309930e68a5SMark Adams } 2310930e68a5SMark Adams 2311930e68a5SMark Adams /*MC 231286a27549SJunchao Zhang MATSOLVERKOKKOS = "Kokkos" - A matrix solver type providing triangular solvers for sequential matrices 231311a5261eSBarry Smith on a single GPU of type, `MATSEQAIJKOKKOS`, `MATAIJKOKKOS`. 2314930e68a5SMark Adams 2315930e68a5SMark Adams Level: beginner 2316930e68a5SMark Adams 23171cc06b55SBarry Smith .seealso: [](ch_matrices), `Mat`, `PCFactorSetMatSolverType()`, `MatSolverType`, `MatCreateSeqAIJKokkos()`, `MATAIJKOKKOS`, `MatKokkosSetFormat()`, `MatKokkosStorageFormat`, `MatKokkosFormatOperation` 2318930e68a5SMark Adams M*/ 231986a27549SJunchao Zhang PETSC_EXTERN PetscErrorCode MatGetFactor_SeqAIJKokkos_Kokkos(Mat A, MatFactorType ftype, Mat *B) /* MatGetFactor_<MatType>_<MatSolverType> */ 2320930e68a5SMark Adams { 2321930e68a5SMark Adams PetscInt n = A->rmap->n; 2322aac854edSJunchao Zhang MPI_Comm comm; 2323930e68a5SMark Adams 2324930e68a5SMark Adams PetscFunctionBegin; 2325aac854edSJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 2326aac854edSJunchao Zhang PetscCall(MatCreate(comm, B)); 23279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*B, n, n, n, n)); 2328aac854edSJunchao Zhang PetscCall(MatSetBlockSizesFromMats(*B, A, A)); 2329930e68a5SMark Adams (*B)->factortype = ftype; 23309566063dSJacob Faibussowitsch PetscCall(MatSetType(*B, MATSEQAIJKOKKOS)); 23319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(*B, MAT_SKIP_ALLOCATION, NULL)); 2332aac854edSJunchao Zhang PetscCheck(!(*B)->spptr, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Expected a NULL spptr"); 2333aac854edSJunchao Zhang 2334aac854edSJunchao Zhang if (ftype == MAT_FACTOR_LU || ftype == MAT_FACTOR_ILU || ftype == MAT_FACTOR_ILUDT) { 2335aac854edSJunchao Zhang (*B)->ops->lufactorsymbolic = MatLUFactorSymbolic_SeqAIJKokkos; 2336aac854edSJunchao Zhang (*B)->ops->ilufactorsymbolic = MatILUFactorSymbolic_SeqAIJKokkos; 2337aac854edSJunchao Zhang PetscCall(PetscStrallocpy(MATORDERINGND, (char **)&(*B)->preferredordering[MAT_FACTOR_LU])); 2338aac854edSJunchao Zhang PetscCall(PetscStrallocpy(MATORDERINGNATURAL, (char **)&(*B)->preferredordering[MAT_FACTOR_ILU])); 2339aac854edSJunchao Zhang PetscCall(PetscStrallocpy(MATORDERINGNATURAL, (char **)&(*B)->preferredordering[MAT_FACTOR_ILUDT])); 2340aac854edSJunchao Zhang } else if (ftype == MAT_FACTOR_CHOLESKY || ftype == MAT_FACTOR_ICC) { 2341aac854edSJunchao Zhang (*B)->ops->iccfactorsymbolic = MatICCFactorSymbolic_SeqAIJKokkos; 2342aac854edSJunchao Zhang (*B)->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_SeqAIJKokkos; 2343aac854edSJunchao Zhang PetscCall(PetscStrallocpy(MATORDERINGND, (char **)&(*B)->preferredordering[MAT_FACTOR_CHOLESKY])); 2344aac854edSJunchao Zhang PetscCall(PetscStrallocpy(MATORDERINGNATURAL, (char **)&(*B)->preferredordering[MAT_FACTOR_ICC])); 2345aac854edSJunchao Zhang } else SETERRQ(comm, PETSC_ERR_SUP, "MatFactorType %s is not supported by MatType SeqAIJKokkos", MatFactorTypes[ftype]); 2346aac854edSJunchao Zhang 2347aac854edSJunchao Zhang // The factorization can use the ordering provided in MatLUFactorSymbolic(), MatCholeskyFactorSymbolic() etc, though we do it on host 2348aac854edSJunchao Zhang (*B)->canuseordering = PETSC_TRUE; 2349aac854edSJunchao Zhang PetscCall(PetscObjectComposeFunction((PetscObject)*B, "MatFactorGetSolverType_C", MatFactorGetSolverType_SeqAIJKokkos_Kokkos)); 23503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2351930e68a5SMark Adams } 23528f7e8f9dSMark Adams 2353aac854edSJunchao Zhang PETSC_INTERN PetscErrorCode MatSolverTypeRegister_Kokkos(void) 2354d71ae5a4SJacob Faibussowitsch { 235586a27549SJunchao Zhang PetscFunctionBegin; 23569566063dSJacob Faibussowitsch PetscCall(MatSolverTypeRegister(MATSOLVERKOKKOS, MATSEQAIJKOKKOS, MAT_FACTOR_LU, MatGetFactor_SeqAIJKokkos_Kokkos)); 2357aac854edSJunchao Zhang PetscCall(MatSolverTypeRegister(MATSOLVERKOKKOS, MATSEQAIJKOKKOS, MAT_FACTOR_CHOLESKY, MatGetFactor_SeqAIJKokkos_Kokkos)); 23589566063dSJacob Faibussowitsch PetscCall(MatSolverTypeRegister(MATSOLVERKOKKOS, MATSEQAIJKOKKOS, MAT_FACTOR_ILU, MatGetFactor_SeqAIJKokkos_Kokkos)); 2359aac854edSJunchao Zhang PetscCall(MatSolverTypeRegister(MATSOLVERKOKKOS, MATSEQAIJKOKKOS, MAT_FACTOR_ICC, MatGetFactor_SeqAIJKokkos_Kokkos)); 23603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 236186a27549SJunchao Zhang } 236286a27549SJunchao Zhang 2363076ba34aSJunchao Zhang /* Utility to print out a KokkosCsrMatrix for debugging */ 2364d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PrintCsrMatrix(const KokkosCsrMatrix &csrmat) 2365d71ae5a4SJacob Faibussowitsch { 236645402d8aSJunchao Zhang const auto &iv = Kokkos::create_mirror_view_and_copy(HostMirrorMemorySpace(), csrmat.graph.row_map); 236745402d8aSJunchao Zhang const auto &jv = Kokkos::create_mirror_view_and_copy(HostMirrorMemorySpace(), csrmat.graph.entries); 236845402d8aSJunchao Zhang const auto &av = Kokkos::create_mirror_view_and_copy(HostMirrorMemorySpace(), csrmat.values); 2369076ba34aSJunchao Zhang const PetscInt *i = iv.data(); 2370076ba34aSJunchao Zhang const PetscInt *j = jv.data(); 2371076ba34aSJunchao Zhang const PetscScalar *a = av.data(); 2372076ba34aSJunchao Zhang PetscInt m = csrmat.numRows(), n = csrmat.numCols(), nnz = csrmat.nnz(); 2373076ba34aSJunchao Zhang 2374076ba34aSJunchao Zhang PetscFunctionBegin; 23759566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT " x %" PetscInt_FMT " SeqAIJKokkos, with %" PetscInt_FMT " nonzeros\n", m, n, nnz)); 2376076ba34aSJunchao Zhang for (PetscInt k = 0; k < m; k++) { 23779566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT ": ", k)); 237848a46eb9SPierre Jolivet for (PetscInt p = i[k]; p < i[k + 1]; p++) PetscCall(PetscPrintf(PETSC_COMM_SELF, "%" PetscInt_FMT "(%.1f), ", j[p], (double)PetscRealPart(a[p]))); 23799566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_SELF, "\n")); 2380076ba34aSJunchao Zhang } 23813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2382076ba34aSJunchao Zhang } 2383