xref: /petsc/src/mat/impls/aij/seq/matmatmult.c (revision 1c24bd3795cab3fc5c2fbf4c0c6470c88630006b)
1d50806bdSBarry Smith /*
2a50f8bf6SHong Zhang   Defines matrix-matrix product routines for pairs of AIJ matrices
3d50806bdSBarry Smith           C = A * B
4d50806bdSBarry Smith */
5d50806bdSBarry Smith 
6c1f4806aSKris Buschelman #include "src/mat/impls/aij/seq/aij.h" /*I "petscmat.h" I*/
770f19b1fSKris Buschelman #include "src/mat/utils/freespace.h"
82d09714cSHong Zhang #include "src/mat/impls/aij/mpi/mpiaij.h"
9d50806bdSBarry Smith 
101c239cc6SHong Zhang /*
11c5db241fSHong Zhang   Initialize a linked list
12c5db241fSHong Zhang   Input Parameters:
13c5db241fSHong Zhang     lnk_init  - the initial index value indicating the entry in the list is not set yet
14c5db241fSHong Zhang     nlnk      - max length of the list
15c5db241fSHong Zhang     lnk       - linked list(an integer array) that is allocated
16c5db241fSHong Zhang   output Parameters:
17c5db241fSHong Zhang     lnk       - the linked list with all values set as lnk_int
18c5db241fSHong Zhang */
19c5db241fSHong Zhang #define LNKLISTINITIALIZE(lnk_init,nlnk,lnk){\
20c5db241fSHong Zhang   int _i;\
21c5db241fSHong Zhang   for (_i=0; _i<nlnk; _i++) lnk[_i] = lnk_init;\
22c5db241fSHong Zhang }
23c5db241fSHong Zhang 
24c5db241fSHong Zhang /*
251c239cc6SHong Zhang   Add a index set into a sorted linked list
26a50f8bf6SHong Zhang   Input Parameters:
271c239cc6SHong Zhang     nidx      - number of input indices
281c239cc6SHong Zhang     indices   - interger array
29c5db241fSHong Zhang     lnk_head  - the header of the list
30c5db241fSHong Zhang     lnk_init  - the initial index value indicating the entry in the list is not set yet
311c239cc6SHong Zhang     lnk       - linked list(an integer array) that is created
32a50f8bf6SHong Zhang   output Parameters:
331c239cc6SHong Zhang     nlnk      - number of newly added indices
341c239cc6SHong Zhang     lnk       - the sorted(increasing order) linked list containing new and non-redundate entries from indices
351c239cc6SHong Zhang */
36c5db241fSHong Zhang #define LNKLISTADD(nidx,indices,lnk_head,lnk_init,nlnk,lnk){\
37c5db241fSHong Zhang   int _k,_entry,_lidx=lnk_head,_idx;\
38a50f8bf6SHong Zhang   nlnk = 0;\
39a50f8bf6SHong Zhang   _k=nidx;\
40a50f8bf6SHong Zhang   while (_k){/* assume indices are almost in increasing order, starting from its end saves computation */\
41a50f8bf6SHong Zhang     _entry = indices[--_k];\
42c5db241fSHong Zhang     if (lnk[_entry] == lnk_init) { /* new col */\
43a50f8bf6SHong Zhang       do {\
44a50f8bf6SHong Zhang         _idx = _lidx;\
45a50f8bf6SHong Zhang         _lidx  = lnk[_idx];\
46a50f8bf6SHong Zhang       } while (_entry > _lidx);\
47a50f8bf6SHong Zhang       lnk[_idx] = _entry;\
48a50f8bf6SHong Zhang       lnk[_entry] = _lidx;\
49a50f8bf6SHong Zhang       nlnk++;\
50a50f8bf6SHong Zhang     }\
51a50f8bf6SHong Zhang   }\
521c239cc6SHong Zhang }
53c5db241fSHong Zhang /*
54c5db241fSHong Zhang   Copy data on the list into an array, then initialize the list
55c5db241fSHong Zhang   Input Parameters:
56c5db241fSHong Zhang     lnk_head  - the header of the list
57c5db241fSHong Zhang     lnk_init  - the initial index value indicating the entry in the list is not set yet
58c5db241fSHong Zhang     nlnk      - number of data on the list to be copied
59c5db241fSHong Zhang     lnk       - linked list
60c5db241fSHong Zhang   output Parameters:
61c5db241fSHong Zhang     indices   - array that contains the copied data
62c5db241fSHong Zhang */
63c5db241fSHong Zhang #define LNKLISTCLEAR(lnk_head,lnk_init,nlnk,lnk,indices){\
64c5db241fSHong Zhang   int _j,_idx=lnk_head,_idx0;\
65c5db241fSHong Zhang   for (_j=0; _j<nlnk; _j++){\
66c5db241fSHong Zhang     _idx0 = _idx; _idx = lnk[_idx0];\
67c5db241fSHong Zhang     *(indices+_j) = _idx;\
68c5db241fSHong Zhang     lnk[_idx0] = lnk_init;\
69c5db241fSHong Zhang   }\
70c5db241fSHong Zhang   lnk[_idx] = lnk_init;\
71c5db241fSHong Zhang }
721c239cc6SHong Zhang 
7326be0446SHong Zhang typedef struct { /* used by MatMatMult_MPIAIJ_MPIAIJ for reusing symbolic mat product */
7426be0446SHong Zhang   IS        isrowa,isrowb,iscolb;
7526be0446SHong Zhang   Mat       *aseq,*bseq,C_seq;
7626be0446SHong Zhang } Mat_MatMatMultMPI;
7726be0446SHong Zhang 
782216b3a4SKris Buschelman static int logkey_matmatmult_symbolic = 0;
792216b3a4SKris Buschelman static int logkey_matmatmult_numeric  = 0;
802216b3a4SKris Buschelman 
81c1f4806aSKris Buschelman #undef __FUNCT__
82c1f4806aSKris Buschelman #define __FUNCT__ "MatMatMult"
835c66b693SKris Buschelman /*@
845c66b693SKris Buschelman    MatMatMult - Performs Matrix-Matrix Multiplication C=A*B.
8594e3eecaSKris Buschelman 
865c66b693SKris Buschelman    Collective on Mat
87d50806bdSBarry Smith 
885c66b693SKris Buschelman    Input Parameters:
895c66b693SKris Buschelman +  A - the left matrix
901c741599SHong Zhang .  B - the right matrix
911c741599SHong Zhang .  scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX
92c5db241fSHong Zhang -  fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B))
935c66b693SKris Buschelman 
945c66b693SKris Buschelman    Output Parameters:
955c66b693SKris Buschelman .  C - the product matrix
965c66b693SKris Buschelman 
975c66b693SKris Buschelman    Notes:
985c66b693SKris Buschelman    C will be created and must be destroyed by the user with MatDestroy().
995c66b693SKris Buschelman 
1004d3841fdSKris Buschelman    This routine is currently only implemented for pairs of SeqAIJ matrices and classes
1014d3841fdSKris Buschelman    which inherit from SeqAIJ.  C will be of type MATSEQAIJ.
1025c66b693SKris Buschelman 
1035c66b693SKris Buschelman    Level: intermediate
1045c66b693SKris Buschelman 
1055c66b693SKris Buschelman .seealso: MatMatMultSymbolic(),MatMatMultNumeric()
1065c66b693SKris Buschelman @*/
1071c741599SHong Zhang int MatMatMult(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C)
1082d09714cSHong Zhang {
109d50806bdSBarry Smith   int  ierr;
1102d09714cSHong Zhang 
111d50806bdSBarry Smith   PetscFunctionBegin;
1124482741eSBarry Smith   PetscValidHeaderSpecific(A,MAT_COOKIE,1);
113c9780b6fSBarry Smith   PetscValidType(A,1);
1145c66b693SKris Buschelman   MatPreallocated(A);
1155c66b693SKris Buschelman   if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
1165c66b693SKris Buschelman   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
1174482741eSBarry Smith   PetscValidHeaderSpecific(B,MAT_COOKIE,2);
118c9780b6fSBarry Smith   PetscValidType(B,2);
1195c66b693SKris Buschelman   MatPreallocated(B);
1205c66b693SKris Buschelman   if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
1215c66b693SKris Buschelman   if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
1224482741eSBarry Smith   PetscValidPointer(C,3);
1235c66b693SKris Buschelman   if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N);
124d50806bdSBarry Smith 
125*1c24bd37SHong Zhang   if (fill <=0.0) SETERRQ1(PETSC_ERR_ARG_SIZ,"fill=%g must be > 0.0",fill);
126c5db241fSHong Zhang 
1276284ec50SHong Zhang   ierr = PetscLogEventBegin(MAT_MatMult,A,B,0,0);CHKERRQ(ierr);
1281c741599SHong Zhang   ierr = (*A->ops->matmult)(A,B,scall,fill,C);CHKERRQ(ierr);
1296284ec50SHong Zhang   ierr = PetscLogEventEnd(MAT_MatMult,A,B,0,0);CHKERRQ(ierr);
1304d3841fdSKris Buschelman 
1316284ec50SHong Zhang   PetscFunctionReturn(0);
1326284ec50SHong Zhang }
1336284ec50SHong Zhang 
1346284ec50SHong Zhang #undef __FUNCT__
1356284ec50SHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ"
1361c741599SHong Zhang int MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C)
1372d09714cSHong Zhang {
13826be0446SHong Zhang   int ierr;
1396284ec50SHong Zhang 
1406284ec50SHong Zhang   PetscFunctionBegin;
14126be0446SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
14226be0446SHong Zhang     ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);
1432d09714cSHong Zhang   }
14426be0446SHong Zhang   ierr = MatMatMultNumeric_MPIAIJ_MPIAIJ(A,B,*C);CHKERRQ(ierr);
145d50806bdSBarry Smith   PetscFunctionReturn(0);
146d50806bdSBarry Smith }
1475c66b693SKris Buschelman 
1485c66b693SKris Buschelman #undef __FUNCT__
1495c66b693SKris Buschelman #define __FUNCT__ "MatMatMult_SeqAIJ_SeqAIJ"
1501c741599SHong Zhang int MatMatMult_SeqAIJ_SeqAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) {
1515c66b693SKris Buschelman   int ierr;
1525c66b693SKris Buschelman 
1535c66b693SKris Buschelman   PetscFunctionBegin;
15426be0446SHong Zhang   if (scall == MAT_INITIAL_MATRIX){
15526be0446SHong Zhang     ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(A,B,fill,C);CHKERRQ(ierr);
15626be0446SHong Zhang   }
15726be0446SHong Zhang   ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ(A,B,*C);CHKERRQ(ierr);
1585c66b693SKris Buschelman   PetscFunctionReturn(0);
1595c66b693SKris Buschelman }
1605c66b693SKris Buschelman 
161c1f4806aSKris Buschelman #undef __FUNCT__
162c1f4806aSKris Buschelman #define __FUNCT__ "MatMatMultSymbolic"
1635c66b693SKris Buschelman /*@
1645c66b693SKris Buschelman    MatMatMultSymbolic - Performs construction, preallocation, and computes the ij structure
1655c66b693SKris Buschelman    of the matrix-matrix product C=A*B.  Call this routine before calling MatMatMultNumeric().
1665c66b693SKris Buschelman 
1675c66b693SKris Buschelman    Collective on Mat
1685c66b693SKris Buschelman 
1695c66b693SKris Buschelman    Input Parameters:
1705c66b693SKris Buschelman +  A - the left matrix
171c5db241fSHong Zhang .  B - the right matrix
172c5db241fSHong Zhang -  fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B))
1735c66b693SKris Buschelman 
1745c66b693SKris Buschelman    Output Parameters:
1755c66b693SKris Buschelman .  C - the matrix containing the ij structure of product matrix
1765c66b693SKris Buschelman 
1775c66b693SKris Buschelman    Notes:
1784d3841fdSKris Buschelman    C will be created as a MATSEQAIJ matrix and must be destroyed by the user with MatDestroy().
1795c66b693SKris Buschelman 
1804d3841fdSKris Buschelman    This routine is currently only implemented for SeqAIJ matrices and classes which inherit from SeqAIJ.
1815c66b693SKris Buschelman 
1825c66b693SKris Buschelman    Level: intermediate
1835c66b693SKris Buschelman 
1845c66b693SKris Buschelman .seealso: MatMatMult(),MatMatMultNumeric()
1855c66b693SKris Buschelman @*/
186c5db241fSHong Zhang int MatMatMultSymbolic(Mat A,Mat B,PetscReal fill,Mat *C) {
1875c66b693SKris Buschelman   /* Perhaps this "interface" routine should be moved into the interface directory.*/
1885c66b693SKris Buschelman   /* To facilitate implementations with varying types, QueryFunction is used.*/
1895c66b693SKris Buschelman   /* It is assumed that implementations will be composed as "MatMatMultSymbolic_<type of A><type of B>". */
1905c66b693SKris Buschelman   int  ierr;
1914d3841fdSKris Buschelman   char symfunct[80];
192c5db241fSHong Zhang   int  (*symbolic)(Mat,Mat,PetscReal,Mat *);
1935c66b693SKris Buschelman 
1945c66b693SKris Buschelman   PetscFunctionBegin;
1954482741eSBarry Smith   PetscValidHeaderSpecific(A,MAT_COOKIE,1);
196c9780b6fSBarry Smith   PetscValidType(A,1);
1975c66b693SKris Buschelman   MatPreallocated(A);
1985c66b693SKris Buschelman   if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
1995c66b693SKris Buschelman   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2005c66b693SKris Buschelman 
2014482741eSBarry Smith   PetscValidHeaderSpecific(B,MAT_COOKIE,2);
202c9780b6fSBarry Smith   PetscValidType(B,2);
2035c66b693SKris Buschelman   MatPreallocated(B);
2045c66b693SKris Buschelman   if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
2055c66b693SKris Buschelman   if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
2064482741eSBarry Smith   PetscValidPointer(C,3);
2074482741eSBarry Smith 
2085c66b693SKris Buschelman   if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N);
209*1c24bd37SHong Zhang   if (fill <=0.0) SETERRQ1(PETSC_ERR_ARG_SIZ,"fill=%g must be > 0.0",fill);
2105c66b693SKris Buschelman 
2114d3841fdSKris Buschelman   /* Currently only _seqaijseqaij is implemented, so just query for it in A and B. */
2124d3841fdSKris Buschelman   /* When other implementations exist, attack the multiple dispatch problem. */
2134d3841fdSKris Buschelman   ierr = PetscStrcpy(symfunct,"MatMatMultSymbolic_seqaijseqaij");CHKERRQ(ierr);
2144d3841fdSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,symfunct,(PetscVoidFunction)&symbolic);CHKERRQ(ierr);
2154d3841fdSKris Buschelman   if (!symbolic) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for B of type %s",B->type_name);
2164d3841fdSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)A,symfunct,(PetscVoidFunction)&symbolic);CHKERRQ(ierr);
2174d3841fdSKris Buschelman   if (!symbolic) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for A of type %s",A->type_name);
218c5db241fSHong Zhang   ierr = (*symbolic)(A,B,fill,C);CHKERRQ(ierr);
2195c66b693SKris Buschelman 
2205c66b693SKris Buschelman   PetscFunctionReturn(0);
2215c66b693SKris Buschelman }
222*1c24bd37SHong Zhang 
223*1c24bd37SHong Zhang EXTERN int MatDestroy_MPIAIJ(Mat);
22426be0446SHong Zhang #undef __FUNCT__
22526be0446SHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult"
22626be0446SHong Zhang int MatDestroy_MPIAIJ_MatMatMult(Mat A)
22726be0446SHong Zhang {
22826be0446SHong Zhang   int               ierr;
22926be0446SHong Zhang   Mat_MatMatMultMPI *mult = ( Mat_MatMatMultMPI*)A->spptr;
23026be0446SHong Zhang 
23126be0446SHong Zhang   PetscFunctionBegin;
23226be0446SHong Zhang   /* printf(" ...MatDestroy_MPIAIJ_MatMatMult is called\n"); */
23326be0446SHong Zhang   ierr = PetscFree(mult);CHKERRQ(ierr);
23426be0446SHong Zhang   ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr);
23526be0446SHong Zhang 
23626be0446SHong Zhang   PetscFunctionReturn(0);
23726be0446SHong Zhang }
23858c24d83SHong Zhang 
23958c24d83SHong Zhang #undef __FUNCT__
24026be0446SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ"
24126be0446SHong Zhang int MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat B,PetscReal fill,Mat *C)
24226be0446SHong Zhang {
24326be0446SHong Zhang   Mat           *aseq,*bseq,A_seq=PETSC_NULL,B_seq=PETSC_NULL,C_seq;
24426be0446SHong Zhang   Mat_MPIAIJ    *a = (Mat_MPIAIJ*)A->data;
24526be0446SHong Zhang   int           ierr,*idx,i,start,end,ncols,imark,nzA,nzB,*cmap;
24626be0446SHong Zhang   IS            isrow,iscol;
24726be0446SHong Zhang   Mat_MatMatMultMPI *mult;
24826be0446SHong Zhang 
24926be0446SHong Zhang   PetscFunctionBegin;
25026be0446SHong Zhang   /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */
25126be0446SHong Zhang   start = a->cstart;
25226be0446SHong Zhang   cmap  = a->garray;
25326be0446SHong Zhang   nzA   = a->A->n;
25426be0446SHong Zhang   nzB   = a->B->n;
25526be0446SHong Zhang   ierr  = PetscMalloc((nzA+nzB)*sizeof(int), &idx);CHKERRQ(ierr);
25626be0446SHong Zhang   ncols = 0;
25726be0446SHong Zhang   for (i=0; i<nzB; i++) {
25826be0446SHong Zhang     if (cmap[i] < start) idx[ncols++] = cmap[i];
25926be0446SHong Zhang     else break;
26026be0446SHong Zhang   }
26126be0446SHong Zhang   imark = i;
26226be0446SHong Zhang   for (i=0; i<nzA; i++) idx[ncols++] = start + i;
26326be0446SHong Zhang   for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i];
26426be0446SHong Zhang   ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,&isrow);CHKERRQ(ierr); /* isrow of B = iscol of A! */
26526be0446SHong Zhang   ierr = PetscFree(idx);CHKERRQ(ierr);
26626be0446SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,B->N,0,1,&iscol);CHKERRQ(ierr);
26726be0446SHong Zhang   ierr = MatGetSubMatrices(B,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&bseq);CHKERRQ(ierr);
26826be0446SHong Zhang   ierr = ISDestroy(iscol);CHKERRQ(ierr);
26926be0446SHong Zhang   B_seq = bseq[0];
27026be0446SHong Zhang 
27126be0446SHong Zhang   /*  create a seq matrix A_seq = submatrix of A by taking all local rows of A */
27226be0446SHong Zhang   start = a->rstart; end = a->rend;
27326be0446SHong Zhang   ierr = ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&iscol);CHKERRQ(ierr); /* isrow of A = iscol */
27426be0446SHong Zhang   ierr = MatGetSubMatrices(A,1,&iscol,&isrow,MAT_INITIAL_MATRIX,&aseq);CHKERRQ(ierr);
27526be0446SHong Zhang   ierr = ISDestroy(isrow);CHKERRQ(ierr);
27626be0446SHong Zhang   ierr = ISDestroy(iscol);CHKERRQ(ierr);
27726be0446SHong Zhang   A_seq = aseq[0];
27826be0446SHong Zhang 
27926be0446SHong Zhang   /* compute C_seq = A_seq * B_seq */
28026be0446SHong Zhang   ierr = MatMatMult_SeqAIJ_SeqAIJ(A_seq,B_seq,MAT_INITIAL_MATRIX,fill,&C_seq);CHKERRQ(ierr);
28126be0446SHong Zhang   /*
28226be0446SHong Zhang   int rank;
28326be0446SHong Zhang   ierr = MPI_Comm_rank(A->comm,&rank);CHKERRQ(ierr);
28426be0446SHong Zhang   ierr = PetscPrintf(PETSC_COMM_SELF," [%d] A_seq: %d, %d; B_seq: %d, %d; C_seq: %d, %d;\n",rank,A_seq->m,A_seq->n,B_seq->m,B_seq->n,C_seq->m,C_seq->n);
28526be0446SHong Zhang   */
28626be0446SHong Zhang   ierr = MatDestroyMatrices(1,&aseq);CHKERRQ(ierr);
28726be0446SHong Zhang   ierr = MatDestroyMatrices(1,&bseq);CHKERRQ(ierr);
28826be0446SHong Zhang 
28926be0446SHong Zhang   /* create mpi matrix C by concatinating C_seq */
29026be0446SHong Zhang   ierr = MatMerge(A->comm,C_seq,C);CHKERRQ(ierr);
29126be0446SHong Zhang 
29226be0446SHong Zhang   /* attach the supporting struct to C for reuse of symbolic C */
29326be0446SHong Zhang   ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr);
29426be0446SHong Zhang   (*C)->spptr         = (void*)mult;
29526be0446SHong Zhang   (*C)->ops->destroy  = MatDestroy_MPIAIJ_MatMatMult;
29626be0446SHong Zhang 
29726be0446SHong Zhang   PetscFunctionReturn(0);
29826be0446SHong Zhang }
29926be0446SHong Zhang 
30026be0446SHong Zhang #undef __FUNCT__
30126be0446SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_SeqAIJ_SeqAIJ"
30226be0446SHong Zhang int MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat *C)
30358c24d83SHong Zhang {
30458c24d83SHong Zhang   int            ierr;
30558c24d83SHong Zhang   FreeSpaceList  free_space=PETSC_NULL,current_space=PETSC_NULL;
30658c24d83SHong Zhang   Mat_SeqAIJ     *a=(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
30758c24d83SHong Zhang   int            *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj;
308*1c24bd37SHong Zhang   int            *ci,*cj,*lnk;
3095c66b693SKris Buschelman   int            am=A->M,bn=B->N,bm=B->M;
310c5db241fSHong Zhang   int            i,j,anzi,brow,bnzj,cnzi,nlnk,lnk_init=-1,nspacedouble=0;
31158c24d83SHong Zhang   MatScalar      *ca;
31258c24d83SHong Zhang 
31358c24d83SHong Zhang   PetscFunctionBegin;
3145c66b693SKris Buschelman   /* Start timers */
31558c24d83SHong Zhang   ierr = PetscLogEventBegin(logkey_matmatmult_symbolic,A,B,0,0);CHKERRQ(ierr);
31658c24d83SHong Zhang   /* Set up */
31758c24d83SHong Zhang   /* Allocate ci array, arrays for fill computation and */
31858c24d83SHong Zhang   /* free space for accumulating nonzero column info */
31958c24d83SHong Zhang   ierr = PetscMalloc(((am+1)+1)*sizeof(int),&ci);CHKERRQ(ierr);
32058c24d83SHong Zhang   ci[0] = 0;
32158c24d83SHong Zhang 
32258c24d83SHong Zhang   ierr = PetscMalloc((bn+1)*sizeof(int),&lnk);CHKERRQ(ierr);
323c5db241fSHong Zhang   LNKLISTINITIALIZE(lnk_init,bn,lnk);
32458c24d83SHong Zhang 
325c5db241fSHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
326*1c24bd37SHong Zhang   ierr = GetMoreSpace(int(fill*(ai[am]+bi[bm])),&free_space);CHKERRQ(ierr);
32758c24d83SHong Zhang   current_space = free_space;
32858c24d83SHong Zhang 
32958c24d83SHong Zhang   /* Determine symbolic info for each row of the product: */
33058c24d83SHong Zhang   for (i=0;i<am;i++) {
33158c24d83SHong Zhang     anzi = ai[i+1] - ai[i];
33258c24d83SHong Zhang     cnzi = 0;
33358c24d83SHong Zhang     lnk[bn] = bn;
3342d09714cSHong Zhang     j       = anzi;
3352d09714cSHong Zhang     aj      = a->j + ai[i];
3362d09714cSHong Zhang     while (j){/* assume cols are almost in increasing order, starting from its end saves computation */
3372d09714cSHong Zhang       j--;
3382d09714cSHong Zhang       brow = *(aj + j);
33958c24d83SHong Zhang       bnzj = bi[brow+1] - bi[brow];
34058c24d83SHong Zhang       bjj  = bj + bi[brow];
3411c239cc6SHong Zhang       /* add non-zero cols of B into the sorted linked list lnk */
342c5db241fSHong Zhang       LNKLISTADD(bnzj,bjj,bn,lnk_init,nlnk,lnk);
3431c239cc6SHong Zhang       cnzi += nlnk;
34458c24d83SHong Zhang     }
34558c24d83SHong Zhang 
34658c24d83SHong Zhang     /* If free space is not available, make more free space */
34758c24d83SHong Zhang     /* Double the amount of total space in the list */
34858c24d83SHong Zhang     if (current_space->local_remaining<cnzi) {
34926be0446SHong Zhang       /* printf("MatMatMultSymbolic_SeqAIJ_SeqAIJ()...%d -th row, double space ...\n",i);*/
35058c24d83SHong Zhang       ierr = GetMoreSpace(current_space->total_array_size,&current_space);CHKERRQ(ierr);
351c5db241fSHong Zhang       nspacedouble++;
35258c24d83SHong Zhang     }
35358c24d83SHong Zhang 
354c5db241fSHong Zhang     /* Copy data into free space, then initialize lnk */
355c5db241fSHong Zhang     LNKLISTCLEAR(bn,lnk_init,cnzi,lnk,current_space->array);
356c5db241fSHong Zhang     current_space->array += cnzi;
35758c24d83SHong Zhang 
35858c24d83SHong Zhang     current_space->local_used      += cnzi;
35958c24d83SHong Zhang     current_space->local_remaining -= cnzi;
36058c24d83SHong Zhang 
36158c24d83SHong Zhang     ci[i+1] = ci[i] + cnzi;
36258c24d83SHong Zhang   }
36358c24d83SHong Zhang 
36458c24d83SHong Zhang   /* Column indices are in the list of free space */
36558c24d83SHong Zhang   /* Allocate space for cj, initialize cj, and */
36658c24d83SHong Zhang   /* destroy list of free space and other temporary array(s) */
36758c24d83SHong Zhang   ierr = PetscMalloc((ci[am]+1)*sizeof(int),&cj);CHKERRQ(ierr);
36858c24d83SHong Zhang   ierr = MakeSpaceContiguous(&free_space,cj);CHKERRQ(ierr);
36958c24d83SHong Zhang   ierr = PetscFree(lnk);CHKERRQ(ierr);
37058c24d83SHong Zhang 
37158c24d83SHong Zhang   /* Allocate space for ca */
37258c24d83SHong Zhang   ierr = PetscMalloc((ci[am]+1)*sizeof(MatScalar),&ca);CHKERRQ(ierr);
37358c24d83SHong Zhang   ierr = PetscMemzero(ca,(ci[am]+1)*sizeof(MatScalar));CHKERRQ(ierr);
37458c24d83SHong Zhang 
37526be0446SHong Zhang   /* put together the new symbolic matrix */
37658c24d83SHong Zhang   ierr = MatCreateSeqAIJWithArrays(A->comm,am,bn,ci,cj,ca,C);CHKERRQ(ierr);
37758c24d83SHong Zhang 
37858c24d83SHong Zhang   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
37958c24d83SHong Zhang   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
38058c24d83SHong Zhang   c = (Mat_SeqAIJ *)((*C)->data);
38158c24d83SHong Zhang   c->freedata = PETSC_TRUE;
38258c24d83SHong Zhang   c->nonew    = 0;
38358c24d83SHong Zhang 
38458c24d83SHong Zhang   ierr = PetscLogEventEnd(logkey_matmatmult_symbolic,A,B,0,0);CHKERRQ(ierr);
385c5db241fSHong Zhang   PetscLogInfo((PetscObject)(*C),"Number of calls to GetMoreSpace(): %d\n",nspacedouble);
38658c24d83SHong Zhang   PetscFunctionReturn(0);
38758c24d83SHong Zhang }
388d50806bdSBarry Smith 
389c1f4806aSKris Buschelman #undef __FUNCT__
390c1f4806aSKris Buschelman #define __FUNCT__ "MatMatMultNumeric"
3915c66b693SKris Buschelman /*@
3925c66b693SKris Buschelman    MatMatMultNumeric - Performs the numeric matrix-matrix product.
3935c66b693SKris Buschelman    Call this routine after first calling MatMatMultSymbolic().
3945c66b693SKris Buschelman 
3955c66b693SKris Buschelman    Collective on Mat
3965c66b693SKris Buschelman 
3975c66b693SKris Buschelman    Input Parameters:
3985c66b693SKris Buschelman +  A - the left matrix
3995c66b693SKris Buschelman -  B - the right matrix
4005c66b693SKris Buschelman 
4015c66b693SKris Buschelman    Output Parameters:
4025c66b693SKris Buschelman .  C - the product matrix, whose ij structure was defined from MatMatMultSymbolic().
4035c66b693SKris Buschelman 
4045c66b693SKris Buschelman    Notes:
4055c66b693SKris Buschelman    C must have been created with MatMatMultSymbolic.
4065c66b693SKris Buschelman 
4075c66b693SKris Buschelman    This routine is currently only implemented for SeqAIJ type matrices.
4085c66b693SKris Buschelman 
4095c66b693SKris Buschelman    Level: intermediate
4105c66b693SKris Buschelman 
4115c66b693SKris Buschelman .seealso: MatMatMult(),MatMatMultSymbolic()
4125c66b693SKris Buschelman @*/
4135c66b693SKris Buschelman int MatMatMultNumeric(Mat A,Mat B,Mat C){
4145c66b693SKris Buschelman   /* Perhaps this "interface" routine should be moved into the interface directory.*/
4155c66b693SKris Buschelman   /* To facilitate implementations with varying types, QueryFunction is used.*/
4165c66b693SKris Buschelman   /* It is assumed that implementations will be composed as "MatMatMultNumeric_<type of A><type of B>". */
4175c66b693SKris Buschelman   int ierr;
4184d3841fdSKris Buschelman   char numfunct[80];
4195c66b693SKris Buschelman   int (*numeric)(Mat,Mat,Mat);
4205c66b693SKris Buschelman 
4215c66b693SKris Buschelman   PetscFunctionBegin;
4225c66b693SKris Buschelman 
4234482741eSBarry Smith   PetscValidHeaderSpecific(A,MAT_COOKIE,1);
424c9780b6fSBarry Smith   PetscValidType(A,1);
4255c66b693SKris Buschelman   MatPreallocated(A);
4265c66b693SKris Buschelman   if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
4275c66b693SKris Buschelman   if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
4285c66b693SKris Buschelman 
4294482741eSBarry Smith   PetscValidHeaderSpecific(B,MAT_COOKIE,2);
430c9780b6fSBarry Smith   PetscValidType(B,2);
4315c66b693SKris Buschelman   MatPreallocated(B);
4325c66b693SKris Buschelman   if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
4335c66b693SKris Buschelman   if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
4345c66b693SKris Buschelman 
4354482741eSBarry Smith   PetscValidHeaderSpecific(C,MAT_COOKIE,3);
436c9780b6fSBarry Smith   PetscValidType(C,3);
4375c66b693SKris Buschelman   MatPreallocated(C);
4385c66b693SKris Buschelman   if (!C->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix");
4395c66b693SKris Buschelman   if (C->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
4405c66b693SKris Buschelman 
4415c66b693SKris Buschelman   if (B->N!=C->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->N,C->N);
4425c66b693SKris Buschelman   if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N);
4435c66b693SKris Buschelman   if (A->M!=C->M) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",A->M,C->M);
4445c66b693SKris Buschelman 
4454d3841fdSKris Buschelman   /* Currently only _seqaijseqaij is implemented, so just query for it in A and B. */
4464d3841fdSKris Buschelman   /* When other implementations exist, attack the multiple dispatch problem. */
4474d3841fdSKris Buschelman   ierr = PetscStrcpy(numfunct,"MatMatMultNumeric_seqaijseqaij");CHKERRQ(ierr);
4484d3841fdSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)A,numfunct,(PetscVoidFunction)&numeric);CHKERRQ(ierr);
4494d3841fdSKris Buschelman   if (!numeric) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for A of type %s",A->type_name);
4504d3841fdSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,numfunct,(PetscVoidFunction)&numeric);CHKERRQ(ierr);
4514d3841fdSKris Buschelman   if (!numeric) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for B of type %s",B->type_name);
4524d3841fdSKris Buschelman 
4535c66b693SKris Buschelman   ierr = (*numeric)(A,B,C);CHKERRQ(ierr);
4545c66b693SKris Buschelman 
4555c66b693SKris Buschelman   PetscFunctionReturn(0);
4565c66b693SKris Buschelman }
4575c66b693SKris Buschelman 
458d50806bdSBarry Smith #undef __FUNCT__
45926be0446SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ"
46026be0446SHong Zhang int MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat B,Mat C)
46126be0446SHong Zhang {
46226be0446SHong Zhang   PetscFunctionBegin;
46326be0446SHong Zhang   PetscFunctionReturn(0);
46426be0446SHong Zhang }
46526be0446SHong Zhang 
46626be0446SHong Zhang #undef __FUNCT__
46726be0446SHong Zhang #define __FUNCT__ "MatMatMultNumeric_SeqAIJ_SeqAIJ"
46826be0446SHong Zhang int MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C)
469d50806bdSBarry Smith {
47094e3eecaSKris Buschelman   int        ierr,flops=0;
471d50806bdSBarry Smith   Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data;
472d50806bdSBarry Smith   Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data;
473d50806bdSBarry Smith   Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data;
474d50806bdSBarry Smith   int        *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj,*ci=c->i,*cj=c->j;
4755c66b693SKris Buschelman   int        am=A->M,cn=C->N;
47694e3eecaSKris Buschelman   int        i,j,k,anzi,bnzi,cnzi,brow;
477d50806bdSBarry Smith   MatScalar  *aa=a->a,*ba=b->a,*baj,*ca=c->a,*temp;
478d50806bdSBarry Smith 
479d50806bdSBarry Smith   PetscFunctionBegin;
480d50806bdSBarry Smith 
4815c66b693SKris Buschelman   /* Start timers */
482d50806bdSBarry Smith   ierr = PetscLogEventBegin(logkey_matmatmult_numeric,A,B,C,0);CHKERRQ(ierr);
48394e3eecaSKris Buschelman 
484d50806bdSBarry Smith   /* Allocate temp accumulation space to avoid searching for nonzero columns in C */
485d50806bdSBarry Smith   ierr = PetscMalloc((cn+1)*sizeof(MatScalar),&temp);CHKERRQ(ierr);
486d50806bdSBarry Smith   ierr = PetscMemzero(temp,cn*sizeof(MatScalar));CHKERRQ(ierr);
487d50806bdSBarry Smith   /* Traverse A row-wise. */
488d50806bdSBarry Smith   /* Build the ith row in C by summing over nonzero columns in A, */
489d50806bdSBarry Smith   /* the rows of B corresponding to nonzeros of A. */
490d50806bdSBarry Smith   for (i=0;i<am;i++) {
491d50806bdSBarry Smith     anzi = ai[i+1] - ai[i];
492d50806bdSBarry Smith     for (j=0;j<anzi;j++) {
493d50806bdSBarry Smith       brow = *aj++;
494d50806bdSBarry Smith       bnzi = bi[brow+1] - bi[brow];
495d50806bdSBarry Smith       bjj  = bj + bi[brow];
496d50806bdSBarry Smith       baj  = ba + bi[brow];
497d50806bdSBarry Smith       for (k=0;k<bnzi;k++) {
498d50806bdSBarry Smith         temp[bjj[k]] += (*aa)*baj[k];
499d50806bdSBarry Smith       }
500d50806bdSBarry Smith       flops += 2*bnzi;
501d50806bdSBarry Smith       aa++;
502d50806bdSBarry Smith     }
503d50806bdSBarry Smith     /* Store row back into C, and re-zero temp */
504d50806bdSBarry Smith     cnzi = ci[i+1] - ci[i];
505d50806bdSBarry Smith     for (j=0;j<cnzi;j++) {
506d50806bdSBarry Smith       ca[j] = temp[cj[j]];
507d50806bdSBarry Smith       temp[cj[j]] = 0.0;
508d50806bdSBarry Smith     }
509d50806bdSBarry Smith     ca += cnzi;
510d50806bdSBarry Smith     cj += cnzi;
511d50806bdSBarry Smith   }
512716bacf3SKris Buschelman   ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
513716bacf3SKris Buschelman   ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
514716bacf3SKris Buschelman 
515d50806bdSBarry Smith   /* Free temp */
516d50806bdSBarry Smith   ierr = PetscFree(temp);CHKERRQ(ierr);
517d50806bdSBarry Smith   ierr = PetscLogFlops(flops);CHKERRQ(ierr);
518d50806bdSBarry Smith   ierr = PetscLogEventEnd(logkey_matmatmult_numeric,A,B,C,0);CHKERRQ(ierr);
519d50806bdSBarry Smith   PetscFunctionReturn(0);
520d50806bdSBarry Smith }
521d50806bdSBarry Smith 
522d50806bdSBarry Smith #undef __FUNCT__
5235c66b693SKris Buschelman #define __FUNCT__ "RegisterMatMatMultRoutines_Private"
5245c66b693SKris Buschelman int RegisterMatMatMultRoutines_Private(Mat A) {
525d50806bdSBarry Smith   int ierr;
526d50806bdSBarry Smith 
527d50806bdSBarry Smith   PetscFunctionBegin;
5285c66b693SKris Buschelman   if (!logkey_matmatmult_symbolic) {
52926be0446SHong Zhang     ierr = PetscLogEventRegister(&logkey_matmatmult_symbolic,"MatMatMultSymbolic",MAT_COOKIE);CHKERRQ(ierr);
530d50806bdSBarry Smith   }
53126be0446SHong Zhang   /*
5325c66b693SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatMatMultSymbolic_seqaijseqaij",
53326be0446SHong Zhang                                            "MatMatMultSymbolic_SeqAIJ_SeqAIJ",
53426be0446SHong Zhang                                            MatMatMultSymbolic_SeqAIJ_SeqAIJ);CHKERRQ(ierr);*/
5355c66b693SKris Buschelman   if (!logkey_matmatmult_numeric) {
53626be0446SHong Zhang     ierr = PetscLogEventRegister(&logkey_matmatmult_numeric,"MatMatMultNumeric",MAT_COOKIE);CHKERRQ(ierr);
53794e3eecaSKris Buschelman   }
53826be0446SHong Zhang   /*
5395c66b693SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)A,"MatMatMultNumeric_seqaijseqaij",
54026be0446SHong Zhang                                            "MatMatMultNumeric_SeqAIJ_SeqAIJ",
54126be0446SHong Zhang                                            MatMatMultNumeric_SeqAIJ_SeqAIJ);CHKERRQ(ierr);*/
54294e3eecaSKris Buschelman   PetscFunctionReturn(0);
54394e3eecaSKris Buschelman }
544