xref: /petsc/src/mat/impls/aij/seq/matmatmult.c (revision 2ef1f0ff6e3530e8731eb06ad663081f5844f49f)
1be1d678aSKris Buschelman 
2d50806bdSBarry Smith /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of SeqAIJ matrices
4d50806bdSBarry Smith           C = A * B
5d50806bdSBarry Smith */
6d50806bdSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
8c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
9c6db04a5SJed Brown #include <petscbt.h>
10af0996ceSBarry Smith #include <petsc/private/isimpl.h>
1107475bc1SBarry Smith #include <../src/mat/impls/dense/seq/dense.h>
127bab7c10SHong Zhang 
13d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C)
14d71ae5a4SJacob Faibussowitsch {
15df97dc6dSFande Kong   PetscFunctionBegin;
16dbbe0bcdSBarry Smith   if (C->ops->matmultnumeric) PetscCall((*C->ops->matmultnumeric)(A, B, C));
17dbbe0bcdSBarry Smith   else PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(A, B, C));
183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19df97dc6dSFande Kong }
20df97dc6dSFande Kong 
214222ddf1SHong Zhang /* Modified from MatCreateSeqAIJWithArrays() */
22d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSetSeqAIJWithArrays_private(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt i[], PetscInt j[], PetscScalar a[], MatType mtype, Mat mat)
23d71ae5a4SJacob Faibussowitsch {
244222ddf1SHong Zhang   PetscInt    ii;
254222ddf1SHong Zhang   Mat_SeqAIJ *aij;
26cbc6b225SStefano Zampini   PetscBool   isseqaij, osingle, ofree_a, ofree_ij;
275c66b693SKris Buschelman 
285c66b693SKris Buschelman   PetscFunctionBegin;
29aed4548fSBarry Smith   PetscCheck(m <= 0 || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
309566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, m, n, m, n));
314222ddf1SHong Zhang 
32e4e71118SStefano Zampini   if (!mtype) {
339566063dSJacob Faibussowitsch     PetscCall(PetscObjectBaseTypeCompare((PetscObject)mat, MATSEQAIJ, &isseqaij));
349566063dSJacob Faibussowitsch     if (!isseqaij) PetscCall(MatSetType(mat, MATSEQAIJ));
35e4e71118SStefano Zampini   } else {
369566063dSJacob Faibussowitsch     PetscCall(MatSetType(mat, mtype));
37e4e71118SStefano Zampini   }
38cbc6b225SStefano Zampini 
394222ddf1SHong Zhang   aij      = (Mat_SeqAIJ *)(mat)->data;
40cbc6b225SStefano Zampini   osingle  = aij->singlemalloc;
41cbc6b225SStefano Zampini   ofree_a  = aij->free_a;
42cbc6b225SStefano Zampini   ofree_ij = aij->free_ij;
43cbc6b225SStefano Zampini   /* changes the free flags */
449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(mat, MAT_SKIP_ALLOCATION, NULL));
45cbc6b225SStefano Zampini 
469566063dSJacob Faibussowitsch   PetscCall(PetscFree(aij->ilen));
479566063dSJacob Faibussowitsch   PetscCall(PetscFree(aij->imax));
489566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &aij->imax));
499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &aij->ilen));
50cbc6b225SStefano Zampini   for (ii = 0, aij->nonzerorowcnt = 0, aij->rmax = 0; ii < m; ii++) {
51cbc6b225SStefano Zampini     const PetscInt rnz = i[ii + 1] - i[ii];
52cbc6b225SStefano Zampini     aij->nonzerorowcnt += !!rnz;
53cbc6b225SStefano Zampini     aij->rmax     = PetscMax(aij->rmax, rnz);
54cbc6b225SStefano Zampini     aij->ilen[ii] = aij->imax[ii] = i[ii + 1] - i[ii];
55cbc6b225SStefano Zampini   }
56cbc6b225SStefano Zampini   aij->maxnz = i[m];
57cbc6b225SStefano Zampini   aij->nz    = i[m];
584222ddf1SHong Zhang 
59cbc6b225SStefano Zampini   if (osingle) {
609566063dSJacob Faibussowitsch     PetscCall(PetscFree3(aij->a, aij->j, aij->i));
61cbc6b225SStefano Zampini   } else {
629566063dSJacob Faibussowitsch     if (ofree_a) PetscCall(PetscFree(aij->a));
639566063dSJacob Faibussowitsch     if (ofree_ij) PetscCall(PetscFree(aij->j));
649566063dSJacob Faibussowitsch     if (ofree_ij) PetscCall(PetscFree(aij->i));
65cbc6b225SStefano Zampini   }
664222ddf1SHong Zhang   aij->i     = i;
674222ddf1SHong Zhang   aij->j     = j;
684222ddf1SHong Zhang   aij->a     = a;
694222ddf1SHong Zhang   aij->nonew = -1; /* this indicates that inserting a new value in the matrix that generates a new nonzero is an error */
70cbc6b225SStefano Zampini   /* default to not retain ownership */
71cbc6b225SStefano Zampini   aij->singlemalloc = PETSC_FALSE;
724222ddf1SHong Zhang   aij->free_a       = PETSC_FALSE;
734222ddf1SHong Zhang   aij->free_ij      = PETSC_FALSE;
749566063dSJacob Faibussowitsch   PetscCall(MatCheckCompressedRow(mat, aij->nonzerorowcnt, &aij->compressedrow, aij->i, m, 0.6));
753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
765c66b693SKris Buschelman }
771c24bd37SHong Zhang 
78d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C)
79d71ae5a4SJacob Faibussowitsch {
804222ddf1SHong Zhang   Mat_Product        *product = C->product;
814222ddf1SHong Zhang   MatProductAlgorithm alg;
824222ddf1SHong Zhang   PetscBool           flg;
834222ddf1SHong Zhang 
844222ddf1SHong Zhang   PetscFunctionBegin;
854222ddf1SHong Zhang   if (product) {
864222ddf1SHong Zhang     alg = product->alg;
874222ddf1SHong Zhang   } else {
884222ddf1SHong Zhang     alg = "sorted";
894222ddf1SHong Zhang   }
904222ddf1SHong Zhang   /* sorted */
919566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "sorted", &flg));
924222ddf1SHong Zhang   if (flg) {
939566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(A, B, fill, C));
943ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
954222ddf1SHong Zhang   }
964222ddf1SHong Zhang 
974222ddf1SHong Zhang   /* scalable */
989566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable", &flg));
994222ddf1SHong Zhang   if (flg) {
1009566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(A, B, fill, C));
1013ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1024222ddf1SHong Zhang   }
1034222ddf1SHong Zhang 
1044222ddf1SHong Zhang   /* scalable_fast */
1059566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "scalable_fast", &flg));
1064222ddf1SHong Zhang   if (flg) {
1079566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(A, B, fill, C));
1083ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1094222ddf1SHong Zhang   }
1104222ddf1SHong Zhang 
1114222ddf1SHong Zhang   /* heap */
1129566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "heap", &flg));
1134222ddf1SHong Zhang   if (flg) {
1149566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(A, B, fill, C));
1153ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1164222ddf1SHong Zhang   }
1174222ddf1SHong Zhang 
1184222ddf1SHong Zhang   /* btheap */
1199566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "btheap", &flg));
1204222ddf1SHong Zhang   if (flg) {
1219566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(A, B, fill, C));
1223ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1234222ddf1SHong Zhang   }
1244222ddf1SHong Zhang 
1254222ddf1SHong Zhang   /* llcondensed */
1269566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "llcondensed", &flg));
1274222ddf1SHong Zhang   if (flg) {
1289566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(A, B, fill, C));
1293ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1304222ddf1SHong Zhang   }
1314222ddf1SHong Zhang 
1324222ddf1SHong Zhang   /* rowmerge */
1339566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "rowmerge", &flg));
1344222ddf1SHong Zhang   if (flg) {
1359566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(A, B, fill, C));
1363ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1374222ddf1SHong Zhang   }
1384222ddf1SHong Zhang 
1394222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
1409566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg, "hypre", &flg));
1414222ddf1SHong Zhang   if (flg) {
1429566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C));
1433ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1444222ddf1SHong Zhang   }
1454222ddf1SHong Zhang #endif
1464222ddf1SHong Zhang 
1474222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
1484222ddf1SHong Zhang }
1494222ddf1SHong Zhang 
150d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(Mat A, Mat B, PetscReal fill, Mat C)
151d71ae5a4SJacob Faibussowitsch {
152b561aa9dSHong Zhang   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c;
153971236abSHong Zhang   PetscInt          *ai = a->i, *bi = b->i, *ci, *cj;
154c1ba5575SJed Brown   PetscInt           am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N;
155b561aa9dSHong Zhang   PetscReal          afill;
156eca6b86aSHong Zhang   PetscInt           i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax;
157eec179cfSJacob Faibussowitsch   PetscHMapI         ta;
158fb908031SHong Zhang   PetscBT            lnkbt;
1590298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
160b561aa9dSHong Zhang 
161b561aa9dSHong Zhang   PetscFunctionBegin;
162bd958071SHong Zhang   /* Get ci and cj */
163fb908031SHong Zhang   /* Allocate ci array, arrays for fill computation and */
164fb908031SHong Zhang   /* free space for accumulating nonzero column info */
1659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &ci));
166fb908031SHong Zhang   ci[0] = 0;
167fb908031SHong Zhang 
168fb908031SHong Zhang   /* create and initialize a linked list */
169eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(bn, &ta));
170c373ccc6SHong Zhang   MatRowMergeMax_SeqAIJ(b, bm, ta);
171eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
172eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
173eca6b86aSHong Zhang 
1749566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax, bn, &lnk, &lnkbt));
175fb908031SHong Zhang 
176fb908031SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
1779566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space));
1782205254eSKarl Rupp 
179fb908031SHong Zhang   current_space = free_space;
180fb908031SHong Zhang 
181fb908031SHong Zhang   /* Determine ci and cj */
182fb908031SHong Zhang   for (i = 0; i < am; i++) {
183fb908031SHong Zhang     anzi = ai[i + 1] - ai[i];
184fb908031SHong Zhang     aj   = a->j + ai[i];
185fb908031SHong Zhang     for (j = 0; j < anzi; j++) {
186fb908031SHong Zhang       brow = aj[j];
187fb908031SHong Zhang       bnzj = bi[brow + 1] - bi[brow];
188fb908031SHong Zhang       bj   = b->j + bi[brow];
189fb908031SHong Zhang       /* add non-zero cols of B into the sorted linked list lnk */
1909566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(bnzj, bj, lnk, lnkbt));
191fb908031SHong Zhang     }
1928c78258cSHong Zhang     /* add possible missing diagonal entry */
19348a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted(1, &i, lnk, lnkbt));
194fb908031SHong Zhang     cnzi = lnk[0];
195fb908031SHong Zhang 
196fb908031SHong Zhang     /* If free space is not available, make more free space */
197fb908031SHong Zhang     /* Double the amount of total space in the list */
198fb908031SHong Zhang     if (current_space->local_remaining < cnzi) {
1999566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), &current_space));
200fb908031SHong Zhang       ndouble++;
201fb908031SHong Zhang     }
202fb908031SHong Zhang 
203fb908031SHong Zhang     /* Copy data into free space, then initialize lnk */
2049566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(bn, cnzi, current_space->array, lnk, lnkbt));
2052205254eSKarl Rupp 
206fb908031SHong Zhang     current_space->array += cnzi;
207fb908031SHong Zhang     current_space->local_used += cnzi;
208fb908031SHong Zhang     current_space->local_remaining -= cnzi;
2092205254eSKarl Rupp 
210fb908031SHong Zhang     ci[i + 1] = ci[i] + cnzi;
211fb908031SHong Zhang   }
212fb908031SHong Zhang 
213fb908031SHong Zhang   /* Column indices are in the list of free space */
214fb908031SHong Zhang   /* Allocate space for cj, initialize cj, and */
215fb908031SHong Zhang   /* destroy list of free space and other temporary array(s) */
2169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am] + 1, &cj));
2179566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, cj));
2189566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy(lnk, lnkbt));
219b561aa9dSHong Zhang 
22026be0446SHong Zhang   /* put together the new symbolic matrix */
2219566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C));
2229566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
22358c24d83SHong Zhang 
22458c24d83SHong Zhang   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
22558c24d83SHong Zhang   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
2264222ddf1SHong Zhang   c          = (Mat_SeqAIJ *)(C->data);
227aa1aec99SHong Zhang   c->free_a  = PETSC_FALSE;
228e6b907acSBarry Smith   c->free_ij = PETSC_TRUE;
22958c24d83SHong Zhang   c->nonew   = 0;
2304222ddf1SHong Zhang 
2314222ddf1SHong Zhang   /* fast, needs non-scalable O(bn) array 'abdense' */
2324222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
2330b7e3e3dSHong Zhang 
2347212da7cSHong Zhang   /* set MatInfo */
2357212da7cSHong Zhang   afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5;
236f2b054eeSHong Zhang   if (afill < 1.0) afill = 1.0;
2374222ddf1SHong Zhang   C->info.mallocs           = ndouble;
2384222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
2394222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
2407212da7cSHong Zhang 
2417212da7cSHong Zhang #if defined(PETSC_USE_INFO)
2427212da7cSHong Zhang   if (ci[am]) {
2439566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill));
2449566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
245f2b054eeSHong Zhang   } else {
2469566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
247be0fcf8dSHong Zhang   }
248f2b054eeSHong Zhang #endif
2493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
25058c24d83SHong Zhang }
251d50806bdSBarry Smith 
252d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(Mat A, Mat B, Mat C)
253d71ae5a4SJacob Faibussowitsch {
254d13dce4bSSatish Balay   PetscLogDouble     flops = 0.0;
255d50806bdSBarry Smith   Mat_SeqAIJ        *a     = (Mat_SeqAIJ *)A->data;
256d50806bdSBarry Smith   Mat_SeqAIJ        *b     = (Mat_SeqAIJ *)B->data;
257d50806bdSBarry Smith   Mat_SeqAIJ        *c     = (Mat_SeqAIJ *)C->data;
25838baddfdSBarry Smith   PetscInt          *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, *bjj, *ci = c->i, *cj = c->j;
259c58ca2e3SHong Zhang   PetscInt           am = A->rmap->n, cm = C->rmap->n;
260519eb980SHong Zhang   PetscInt           i, j, k, anzi, bnzi, cnzi, brow;
2612e5835c6SStefano Zampini   PetscScalar       *ca, valtmp;
262aa1aec99SHong Zhang   PetscScalar       *ab_dense;
2636718818eSStefano Zampini   PetscContainer     cab_dense;
2642e5835c6SStefano Zampini   const PetscScalar *aa, *ba, *baj;
265d50806bdSBarry Smith 
266d50806bdSBarry Smith   PetscFunctionBegin;
2679566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A, &aa));
2689566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &ba));
269aa1aec99SHong Zhang   if (!c->a) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */
2709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ci[cm] + 1, &ca));
271aa1aec99SHong Zhang     c->a      = ca;
272aa1aec99SHong Zhang     c->free_a = PETSC_TRUE;
2736718818eSStefano Zampini   } else ca = c->a;
2746718818eSStefano Zampini 
2756718818eSStefano Zampini   /* TODO this should be done in the symbolic phase */
2766718818eSStefano Zampini   /* However, this function is so heavily used (sometimes in an hidden way through multnumeric function pointers
2776718818eSStefano Zampini      that is hard to eradicate) */
2789566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)C, "__PETSc__ab_dense", (PetscObject *)&cab_dense));
2796718818eSStefano Zampini   if (!cab_dense) {
2809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(B->cmap->N, &ab_dense));
2819566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &cab_dense));
2829566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(cab_dense, ab_dense));
2839566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(cab_dense, PetscContainerUserDestroyDefault));
2849566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)C, "__PETSc__ab_dense", (PetscObject)cab_dense));
2859566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)cab_dense));
286d90d86d0SMatthew G. Knepley   }
2879566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(cab_dense, (void **)&ab_dense));
2889566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(ab_dense, B->cmap->N));
289aa1aec99SHong Zhang 
290c124e916SHong Zhang   /* clean old values in C */
2919566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(ca, ci[cm]));
292d50806bdSBarry Smith   /* Traverse A row-wise. */
293d50806bdSBarry Smith   /* Build the ith row in C by summing over nonzero columns in A, */
294d50806bdSBarry Smith   /* the rows of B corresponding to nonzeros of A. */
295d50806bdSBarry Smith   for (i = 0; i < am; i++) {
296d50806bdSBarry Smith     anzi = ai[i + 1] - ai[i];
297d50806bdSBarry Smith     for (j = 0; j < anzi; j++) {
298519eb980SHong Zhang       brow = aj[j];
299d50806bdSBarry Smith       bnzi = bi[brow + 1] - bi[brow];
300d50806bdSBarry Smith       bjj  = bj + bi[brow];
301d50806bdSBarry Smith       baj  = ba + bi[brow];
302519eb980SHong Zhang       /* perform dense axpy */
30336ec6d2dSHong Zhang       valtmp = aa[j];
304ad540459SPierre Jolivet       for (k = 0; k < bnzi; k++) ab_dense[bjj[k]] += valtmp * baj[k];
305519eb980SHong Zhang       flops += 2 * bnzi;
306519eb980SHong Zhang     }
3079371c9d4SSatish Balay     aj += anzi;
3089371c9d4SSatish Balay     aa += anzi;
309c58ca2e3SHong Zhang 
310c58ca2e3SHong Zhang     cnzi = ci[i + 1] - ci[i];
311519eb980SHong Zhang     for (k = 0; k < cnzi; k++) {
312519eb980SHong Zhang       ca[k] += ab_dense[cj[k]];
313519eb980SHong Zhang       ab_dense[cj[k]] = 0.0; /* zero ab_dense */
314519eb980SHong Zhang     }
315519eb980SHong Zhang     flops += cnzi;
3169371c9d4SSatish Balay     cj += cnzi;
3179371c9d4SSatish Balay     ca += cnzi;
318519eb980SHong Zhang   }
3192e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
3202e5835c6SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
3212e5835c6SStefano Zampini #endif
3229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3239566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3249566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
3259566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A, &aa));
3269566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &ba));
3273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
328c58ca2e3SHong Zhang }
329c58ca2e3SHong Zhang 
330d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(Mat A, Mat B, Mat C)
331d71ae5a4SJacob Faibussowitsch {
332c58ca2e3SHong Zhang   PetscLogDouble     flops = 0.0;
333c58ca2e3SHong Zhang   Mat_SeqAIJ        *a     = (Mat_SeqAIJ *)A->data;
334c58ca2e3SHong Zhang   Mat_SeqAIJ        *b     = (Mat_SeqAIJ *)B->data;
335c58ca2e3SHong Zhang   Mat_SeqAIJ        *c     = (Mat_SeqAIJ *)C->data;
336c58ca2e3SHong Zhang   PetscInt          *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, *bjj, *ci = c->i, *cj = c->j;
337c58ca2e3SHong Zhang   PetscInt           am = A->rmap->N, cm = C->rmap->N;
338c58ca2e3SHong Zhang   PetscInt           i, j, k, anzi, bnzi, cnzi, brow;
3392e5835c6SStefano Zampini   PetscScalar       *ca = c->a, valtmp;
3402e5835c6SStefano Zampini   const PetscScalar *aa, *ba, *baj;
341c58ca2e3SHong Zhang   PetscInt           nextb;
342c58ca2e3SHong Zhang 
343c58ca2e3SHong Zhang   PetscFunctionBegin;
3449566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A, &aa));
3459566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B, &ba));
346cf742fccSHong Zhang   if (!ca) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */
3479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ci[cm] + 1, &ca));
348cf742fccSHong Zhang     c->a      = ca;
349cf742fccSHong Zhang     c->free_a = PETSC_TRUE;
350cf742fccSHong Zhang   }
351cf742fccSHong Zhang 
352c58ca2e3SHong Zhang   /* clean old values in C */
3539566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(ca, ci[cm]));
354c58ca2e3SHong Zhang   /* Traverse A row-wise. */
355c58ca2e3SHong Zhang   /* Build the ith row in C by summing over nonzero columns in A, */
356c58ca2e3SHong Zhang   /* the rows of B corresponding to nonzeros of A. */
357519eb980SHong Zhang   for (i = 0; i < am; i++) {
358519eb980SHong Zhang     anzi = ai[i + 1] - ai[i];
359519eb980SHong Zhang     cnzi = ci[i + 1] - ci[i];
360519eb980SHong Zhang     for (j = 0; j < anzi; j++) {
361519eb980SHong Zhang       brow = aj[j];
362519eb980SHong Zhang       bnzi = bi[brow + 1] - bi[brow];
363519eb980SHong Zhang       bjj  = bj + bi[brow];
364519eb980SHong Zhang       baj  = ba + bi[brow];
365519eb980SHong Zhang       /* perform sparse axpy */
36636ec6d2dSHong Zhang       valtmp = aa[j];
367c124e916SHong Zhang       nextb  = 0;
368c124e916SHong Zhang       for (k = 0; nextb < bnzi; k++) {
369c124e916SHong Zhang         if (cj[k] == bjj[nextb]) { /* ccol == bcol */
37036ec6d2dSHong Zhang           ca[k] += valtmp * baj[nextb++];
371c124e916SHong Zhang         }
372d50806bdSBarry Smith       }
373d50806bdSBarry Smith       flops += 2 * bnzi;
374d50806bdSBarry Smith     }
3759371c9d4SSatish Balay     aj += anzi;
3769371c9d4SSatish Balay     aa += anzi;
3779371c9d4SSatish Balay     cj += cnzi;
3789371c9d4SSatish Balay     ca += cnzi;
379d50806bdSBarry Smith   }
3802e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
3812e5835c6SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
3822e5835c6SStefano Zampini #endif
3839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
3849566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
3859566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
3869566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A, &aa));
3879566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B, &ba));
3883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
389d50806bdSBarry Smith }
390bc011b1eSHong Zhang 
391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(Mat A, Mat B, PetscReal fill, Mat C)
392d71ae5a4SJacob Faibussowitsch {
39325296bd5SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c;
39425296bd5SBarry Smith   PetscInt          *ai = a->i, *bi = b->i, *ci, *cj;
3953c50cad2SHong Zhang   PetscInt           am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N;
39625296bd5SBarry Smith   MatScalar         *ca;
39725296bd5SBarry Smith   PetscReal          afill;
398eca6b86aSHong Zhang   PetscInt           i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax;
399eec179cfSJacob Faibussowitsch   PetscHMapI         ta;
4000298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
40125296bd5SBarry Smith 
40225296bd5SBarry Smith   PetscFunctionBegin;
4033c50cad2SHong Zhang   /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_fast() */
4043c50cad2SHong Zhang   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
4059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &ci));
4063c50cad2SHong Zhang   ci[0] = 0;
4073c50cad2SHong Zhang 
4083c50cad2SHong Zhang   /* create and initialize a linked list */
409eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(bn, &ta));
410c373ccc6SHong Zhang   MatRowMergeMax_SeqAIJ(b, bm, ta);
411eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
412eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
413eca6b86aSHong Zhang 
4149566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_fast(Crmax, &lnk));
4153c50cad2SHong Zhang 
4163c50cad2SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
4179566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space));
4183c50cad2SHong Zhang   current_space = free_space;
4193c50cad2SHong Zhang 
4203c50cad2SHong Zhang   /* Determine ci and cj */
4213c50cad2SHong Zhang   for (i = 0; i < am; i++) {
4223c50cad2SHong Zhang     anzi = ai[i + 1] - ai[i];
4233c50cad2SHong Zhang     aj   = a->j + ai[i];
4243c50cad2SHong Zhang     for (j = 0; j < anzi; j++) {
4253c50cad2SHong Zhang       brow = aj[j];
4263c50cad2SHong Zhang       bnzj = bi[brow + 1] - bi[brow];
4273c50cad2SHong Zhang       bj   = b->j + bi[brow];
4283c50cad2SHong Zhang       /* add non-zero cols of B into the sorted linked list lnk */
4299566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_fast(bnzj, bj, lnk));
4303c50cad2SHong Zhang     }
4318c78258cSHong Zhang     /* add possible missing diagonal entry */
43248a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted_fast(1, &i, lnk));
4333c50cad2SHong Zhang     cnzi = lnk[1];
4343c50cad2SHong Zhang 
4353c50cad2SHong Zhang     /* If free space is not available, make more free space */
4363c50cad2SHong Zhang     /* Double the amount of total space in the list */
4373c50cad2SHong Zhang     if (current_space->local_remaining < cnzi) {
4389566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), &current_space));
4393c50cad2SHong Zhang       ndouble++;
4403c50cad2SHong Zhang     }
4413c50cad2SHong Zhang 
4423c50cad2SHong Zhang     /* Copy data into free space, then initialize lnk */
4439566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_fast(cnzi, current_space->array, lnk));
4442205254eSKarl Rupp 
4453c50cad2SHong Zhang     current_space->array += cnzi;
4463c50cad2SHong Zhang     current_space->local_used += cnzi;
4473c50cad2SHong Zhang     current_space->local_remaining -= cnzi;
4482205254eSKarl Rupp 
4493c50cad2SHong Zhang     ci[i + 1] = ci[i] + cnzi;
4503c50cad2SHong Zhang   }
4513c50cad2SHong Zhang 
4523c50cad2SHong Zhang   /* Column indices are in the list of free space */
4533c50cad2SHong Zhang   /* Allocate space for cj, initialize cj, and */
4543c50cad2SHong Zhang   /* destroy list of free space and other temporary array(s) */
4559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am] + 1, &cj));
4569566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, cj));
4579566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_fast(lnk));
45825296bd5SBarry Smith 
45925296bd5SBarry Smith   /* Allocate space for ca */
4609566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ci[am] + 1, &ca));
46125296bd5SBarry Smith 
46225296bd5SBarry Smith   /* put together the new symbolic matrix */
4639566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, ca, ((PetscObject)A)->type_name, C));
4649566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
46525296bd5SBarry Smith 
46625296bd5SBarry Smith   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
46725296bd5SBarry Smith   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
4684222ddf1SHong Zhang   c          = (Mat_SeqAIJ *)(C->data);
46925296bd5SBarry Smith   c->free_a  = PETSC_TRUE;
47025296bd5SBarry Smith   c->free_ij = PETSC_TRUE;
47125296bd5SBarry Smith   c->nonew   = 0;
4722205254eSKarl Rupp 
4734222ddf1SHong Zhang   /* slower, less memory */
4744222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable;
47525296bd5SBarry Smith 
47625296bd5SBarry Smith   /* set MatInfo */
47725296bd5SBarry Smith   afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5;
47825296bd5SBarry Smith   if (afill < 1.0) afill = 1.0;
4794222ddf1SHong Zhang   C->info.mallocs           = ndouble;
4804222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
4814222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
48225296bd5SBarry Smith 
48325296bd5SBarry Smith #if defined(PETSC_USE_INFO)
48425296bd5SBarry Smith   if (ci[am]) {
4859566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill));
4869566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
48725296bd5SBarry Smith   } else {
4889566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
48925296bd5SBarry Smith   }
49025296bd5SBarry Smith #endif
4913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
49225296bd5SBarry Smith }
49325296bd5SBarry Smith 
494d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(Mat A, Mat B, PetscReal fill, Mat C)
495d71ae5a4SJacob Faibussowitsch {
496e9e4536cSHong Zhang   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c;
497bf9555e6SHong Zhang   PetscInt          *ai = a->i, *bi = b->i, *ci, *cj;
49825c41797SHong Zhang   PetscInt           am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N;
499e9e4536cSHong Zhang   MatScalar         *ca;
500e9e4536cSHong Zhang   PetscReal          afill;
501eca6b86aSHong Zhang   PetscInt           i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax;
502eec179cfSJacob Faibussowitsch   PetscHMapI         ta;
5030298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
504e9e4536cSHong Zhang 
505e9e4536cSHong Zhang   PetscFunctionBegin;
506bd958071SHong Zhang   /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_Scalalbe() */
507bd958071SHong Zhang   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
5089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &ci));
509bd958071SHong Zhang   ci[0] = 0;
510bd958071SHong Zhang 
511bd958071SHong Zhang   /* create and initialize a linked list */
512eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(bn, &ta));
513c373ccc6SHong Zhang   MatRowMergeMax_SeqAIJ(b, bm, ta);
514eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(ta, &Crmax));
515eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&ta));
5169566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Crmax, &lnk));
517bd958071SHong Zhang 
518bd958071SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
5199566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space));
520bd958071SHong Zhang   current_space = free_space;
521bd958071SHong Zhang 
522bd958071SHong Zhang   /* Determine ci and cj */
523bd958071SHong Zhang   for (i = 0; i < am; i++) {
524bd958071SHong Zhang     anzi = ai[i + 1] - ai[i];
525bd958071SHong Zhang     aj   = a->j + ai[i];
526bd958071SHong Zhang     for (j = 0; j < anzi; j++) {
527bd958071SHong Zhang       brow = aj[j];
528bd958071SHong Zhang       bnzj = bi[brow + 1] - bi[brow];
529bd958071SHong Zhang       bj   = b->j + bi[brow];
530bd958071SHong Zhang       /* add non-zero cols of B into the sorted linked list lnk */
5319566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(bnzj, bj, lnk));
532bd958071SHong Zhang     }
5338c78258cSHong Zhang     /* add possible missing diagonal entry */
53448a46eb9SPierre Jolivet     if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted_Scalable(1, &i, lnk));
5358c78258cSHong Zhang 
536bd958071SHong Zhang     cnzi = lnk[0];
537bd958071SHong Zhang 
538bd958071SHong Zhang     /* If free space is not available, make more free space */
539bd958071SHong Zhang     /* Double the amount of total space in the list */
540bd958071SHong Zhang     if (current_space->local_remaining < cnzi) {
5419566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), &current_space));
542bd958071SHong Zhang       ndouble++;
543bd958071SHong Zhang     }
544bd958071SHong Zhang 
545bd958071SHong Zhang     /* Copy data into free space, then initialize lnk */
5469566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(cnzi, current_space->array, lnk));
5472205254eSKarl Rupp 
548bd958071SHong Zhang     current_space->array += cnzi;
549bd958071SHong Zhang     current_space->local_used += cnzi;
550bd958071SHong Zhang     current_space->local_remaining -= cnzi;
5512205254eSKarl Rupp 
552bd958071SHong Zhang     ci[i + 1] = ci[i] + cnzi;
553bd958071SHong Zhang   }
554bd958071SHong Zhang 
555bd958071SHong Zhang   /* Column indices are in the list of free space */
556bd958071SHong Zhang   /* Allocate space for cj, initialize cj, and */
557bd958071SHong Zhang   /* destroy list of free space and other temporary array(s) */
5589566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am] + 1, &cj));
5599566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, cj));
5609566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
561e9e4536cSHong Zhang 
562e9e4536cSHong Zhang   /* Allocate space for ca */
5639566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ci[am] + 1, &ca));
564e9e4536cSHong Zhang 
565e9e4536cSHong Zhang   /* put together the new symbolic matrix */
5669566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, ca, ((PetscObject)A)->type_name, C));
5679566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
568e9e4536cSHong Zhang 
569e9e4536cSHong Zhang   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
570e9e4536cSHong Zhang   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
5714222ddf1SHong Zhang   c          = (Mat_SeqAIJ *)(C->data);
572e9e4536cSHong Zhang   c->free_a  = PETSC_TRUE;
573e9e4536cSHong Zhang   c->free_ij = PETSC_TRUE;
574e9e4536cSHong Zhang   c->nonew   = 0;
5752205254eSKarl Rupp 
5764222ddf1SHong Zhang   /* slower, less memory */
5774222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable;
578e9e4536cSHong Zhang 
579e9e4536cSHong Zhang   /* set MatInfo */
580e9e4536cSHong Zhang   afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5;
581e9e4536cSHong Zhang   if (afill < 1.0) afill = 1.0;
5824222ddf1SHong Zhang   C->info.mallocs           = ndouble;
5834222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
5844222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
585e9e4536cSHong Zhang 
586e9e4536cSHong Zhang #if defined(PETSC_USE_INFO)
587e9e4536cSHong Zhang   if (ci[am]) {
5889566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill));
5899566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
590e9e4536cSHong Zhang   } else {
5919566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
592e9e4536cSHong Zhang   }
593e9e4536cSHong Zhang #endif
5943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
595e9e4536cSHong Zhang }
596e9e4536cSHong Zhang 
597d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(Mat A, Mat B, PetscReal fill, Mat C)
598d71ae5a4SJacob Faibussowitsch {
5990ced3a2bSJed Brown   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c;
6000ced3a2bSJed Brown   const PetscInt    *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j;
6010ced3a2bSJed Brown   PetscInt          *ci, *cj, *bb;
6020ced3a2bSJed Brown   PetscInt           am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N;
6030ced3a2bSJed Brown   PetscReal          afill;
6040ced3a2bSJed Brown   PetscInt           i, j, col, ndouble = 0;
6050298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
6060ced3a2bSJed Brown   PetscHeap          h;
6070ced3a2bSJed Brown 
6080ced3a2bSJed Brown   PetscFunctionBegin;
609cd093f1dSJed Brown   /* Get ci and cj - by merging sorted rows using a heap */
6100ced3a2bSJed Brown   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
6119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &ci));
6120ced3a2bSJed Brown   ci[0] = 0;
6130ced3a2bSJed Brown 
6140ced3a2bSJed Brown   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
6159566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space));
6160ced3a2bSJed Brown   current_space = free_space;
6170ced3a2bSJed Brown 
6189566063dSJacob Faibussowitsch   PetscCall(PetscHeapCreate(a->rmax, &h));
6199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a->rmax, &bb));
6200ced3a2bSJed Brown 
6210ced3a2bSJed Brown   /* Determine ci and cj */
6220ced3a2bSJed Brown   for (i = 0; i < am; i++) {
6230ced3a2bSJed Brown     const PetscInt  anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
6240ced3a2bSJed Brown     const PetscInt *acol = aj + ai[i];        /* column indices of nonzero entries in this row */
6250ced3a2bSJed Brown     ci[i + 1]            = ci[i];
6260ced3a2bSJed Brown     /* Populate the min heap */
6270ced3a2bSJed Brown     for (j = 0; j < anzi; j++) {
6280ced3a2bSJed Brown       bb[j] = bi[acol[j]];           /* bb points at the start of the row */
6290ced3a2bSJed Brown       if (bb[j] < bi[acol[j] + 1]) { /* Add if row is nonempty */
6309566063dSJacob Faibussowitsch         PetscCall(PetscHeapAdd(h, j, bj[bb[j]++]));
6310ced3a2bSJed Brown       }
6320ced3a2bSJed Brown     }
6330ced3a2bSJed Brown     /* Pick off the min element, adding it to free space */
6349566063dSJacob Faibussowitsch     PetscCall(PetscHeapPop(h, &j, &col));
6350ced3a2bSJed Brown     while (j >= 0) {
6360ced3a2bSJed Brown       if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */
6379566063dSJacob Faibussowitsch         PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2, current_space->total_array_size), 16 << 20), &current_space));
6380ced3a2bSJed Brown         ndouble++;
6390ced3a2bSJed Brown       }
6400ced3a2bSJed Brown       *(current_space->array++) = col;
6410ced3a2bSJed Brown       current_space->local_used++;
6420ced3a2bSJed Brown       current_space->local_remaining--;
6430ced3a2bSJed Brown       ci[i + 1]++;
6440ced3a2bSJed Brown 
6450ced3a2bSJed Brown       /* stash if anything else remains in this row of B */
6469566063dSJacob Faibussowitsch       if (bb[j] < bi[acol[j] + 1]) PetscCall(PetscHeapStash(h, j, bj[bb[j]++]));
6470ced3a2bSJed Brown       while (1) { /* pop and stash any other rows of B that also had an entry in this column */
6480ced3a2bSJed Brown         PetscInt j2, col2;
6499566063dSJacob Faibussowitsch         PetscCall(PetscHeapPeek(h, &j2, &col2));
6500ced3a2bSJed Brown         if (col2 != col) break;
6519566063dSJacob Faibussowitsch         PetscCall(PetscHeapPop(h, &j2, &col2));
6529566063dSJacob Faibussowitsch         if (bb[j2] < bi[acol[j2] + 1]) PetscCall(PetscHeapStash(h, j2, bj[bb[j2]++]));
6530ced3a2bSJed Brown       }
6540ced3a2bSJed Brown       /* Put any stashed elements back into the min heap */
6559566063dSJacob Faibussowitsch       PetscCall(PetscHeapUnstash(h));
6569566063dSJacob Faibussowitsch       PetscCall(PetscHeapPop(h, &j, &col));
6570ced3a2bSJed Brown     }
6580ced3a2bSJed Brown   }
6599566063dSJacob Faibussowitsch   PetscCall(PetscFree(bb));
6609566063dSJacob Faibussowitsch   PetscCall(PetscHeapDestroy(&h));
6610ced3a2bSJed Brown 
6620ced3a2bSJed Brown   /* Column indices are in the list of free space */
6630ced3a2bSJed Brown   /* Allocate space for cj, initialize cj, and */
6640ced3a2bSJed Brown   /* destroy list of free space and other temporary array(s) */
6659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am], &cj));
6669566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, cj));
6670ced3a2bSJed Brown 
6680ced3a2bSJed Brown   /* put together the new symbolic matrix */
6699566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C));
6709566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
6710ced3a2bSJed Brown 
6720ced3a2bSJed Brown   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6730ced3a2bSJed Brown   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
6744222ddf1SHong Zhang   c          = (Mat_SeqAIJ *)(C->data);
6750ced3a2bSJed Brown   c->free_a  = PETSC_TRUE;
6760ced3a2bSJed Brown   c->free_ij = PETSC_TRUE;
6770ced3a2bSJed Brown   c->nonew   = 0;
67826fbe8dcSKarl Rupp 
6794222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
6800ced3a2bSJed Brown 
6810ced3a2bSJed Brown   /* set MatInfo */
6820ced3a2bSJed Brown   afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5;
6830ced3a2bSJed Brown   if (afill < 1.0) afill = 1.0;
6844222ddf1SHong Zhang   C->info.mallocs           = ndouble;
6854222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
6864222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
6870ced3a2bSJed Brown 
6880ced3a2bSJed Brown #if defined(PETSC_USE_INFO)
6890ced3a2bSJed Brown   if (ci[am]) {
6909566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill));
6919566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
6920ced3a2bSJed Brown   } else {
6939566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
6940ced3a2bSJed Brown   }
6950ced3a2bSJed Brown #endif
6963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6970ced3a2bSJed Brown }
698e9e4536cSHong Zhang 
699d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(Mat A, Mat B, PetscReal fill, Mat C)
700d71ae5a4SJacob Faibussowitsch {
7018a07c6f1SJed Brown   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c;
7028a07c6f1SJed Brown   const PetscInt    *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j;
7038a07c6f1SJed Brown   PetscInt          *ci, *cj, *bb;
7048a07c6f1SJed Brown   PetscInt           am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N;
7058a07c6f1SJed Brown   PetscReal          afill;
7068a07c6f1SJed Brown   PetscInt           i, j, col, ndouble = 0;
7070298fd71SBarry Smith   PetscFreeSpaceList free_space = NULL, current_space = NULL;
7088a07c6f1SJed Brown   PetscHeap          h;
7098a07c6f1SJed Brown   PetscBT            bt;
7108a07c6f1SJed Brown 
7118a07c6f1SJed Brown   PetscFunctionBegin;
712cd093f1dSJed Brown   /* Get ci and cj - using a heap for the sorted rows, but use BT so that each index is only added once */
7138a07c6f1SJed Brown   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
7149566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 2, &ci));
7158a07c6f1SJed Brown   ci[0] = 0;
7168a07c6f1SJed Brown 
7178a07c6f1SJed Brown   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
7189566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space));
7192205254eSKarl Rupp 
7208a07c6f1SJed Brown   current_space = free_space;
7218a07c6f1SJed Brown 
7229566063dSJacob Faibussowitsch   PetscCall(PetscHeapCreate(a->rmax, &h));
7239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a->rmax, &bb));
7249566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(bn, &bt));
7258a07c6f1SJed Brown 
7268a07c6f1SJed Brown   /* Determine ci and cj */
7278a07c6f1SJed Brown   for (i = 0; i < am; i++) {
7288a07c6f1SJed Brown     const PetscInt  anzi = ai[i + 1] - ai[i];    /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
7298a07c6f1SJed Brown     const PetscInt *acol = aj + ai[i];           /* column indices of nonzero entries in this row */
7308a07c6f1SJed Brown     const PetscInt *fptr = current_space->array; /* Save beginning of the row so we can clear the BT later */
7318a07c6f1SJed Brown     ci[i + 1]            = ci[i];
7328a07c6f1SJed Brown     /* Populate the min heap */
7338a07c6f1SJed Brown     for (j = 0; j < anzi; j++) {
7348a07c6f1SJed Brown       PetscInt brow = acol[j];
7358a07c6f1SJed Brown       for (bb[j] = bi[brow]; bb[j] < bi[brow + 1]; bb[j]++) {
7368a07c6f1SJed Brown         PetscInt bcol = bj[bb[j]];
7378a07c6f1SJed Brown         if (!PetscBTLookupSet(bt, bcol)) { /* new entry */
7389566063dSJacob Faibussowitsch           PetscCall(PetscHeapAdd(h, j, bcol));
7398a07c6f1SJed Brown           bb[j]++;
7408a07c6f1SJed Brown           break;
7418a07c6f1SJed Brown         }
7428a07c6f1SJed Brown       }
7438a07c6f1SJed Brown     }
7448a07c6f1SJed Brown     /* Pick off the min element, adding it to free space */
7459566063dSJacob Faibussowitsch     PetscCall(PetscHeapPop(h, &j, &col));
7468a07c6f1SJed Brown     while (j >= 0) {
7478a07c6f1SJed Brown       if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */
7480298fd71SBarry Smith         fptr = NULL;                            /* need PetscBTMemzero */
7499566063dSJacob Faibussowitsch         PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2, current_space->total_array_size), 16 << 20), &current_space));
7508a07c6f1SJed Brown         ndouble++;
7518a07c6f1SJed Brown       }
7528a07c6f1SJed Brown       *(current_space->array++) = col;
7538a07c6f1SJed Brown       current_space->local_used++;
7548a07c6f1SJed Brown       current_space->local_remaining--;
7558a07c6f1SJed Brown       ci[i + 1]++;
7568a07c6f1SJed Brown 
7578a07c6f1SJed Brown       /* stash if anything else remains in this row of B */
7588a07c6f1SJed Brown       for (; bb[j] < bi[acol[j] + 1]; bb[j]++) {
7598a07c6f1SJed Brown         PetscInt bcol = bj[bb[j]];
7608a07c6f1SJed Brown         if (!PetscBTLookupSet(bt, bcol)) { /* new entry */
7619566063dSJacob Faibussowitsch           PetscCall(PetscHeapAdd(h, j, bcol));
7628a07c6f1SJed Brown           bb[j]++;
7638a07c6f1SJed Brown           break;
7648a07c6f1SJed Brown         }
7658a07c6f1SJed Brown       }
7669566063dSJacob Faibussowitsch       PetscCall(PetscHeapPop(h, &j, &col));
7678a07c6f1SJed Brown     }
7688a07c6f1SJed Brown     if (fptr) { /* Clear the bits for this row */
7699566063dSJacob Faibussowitsch       for (; fptr < current_space->array; fptr++) PetscCall(PetscBTClear(bt, *fptr));
7708a07c6f1SJed Brown     } else { /* We reallocated so we don't remember (easily) how to clear only the bits we changed */
7719566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(bn, bt));
7728a07c6f1SJed Brown     }
7738a07c6f1SJed Brown   }
7749566063dSJacob Faibussowitsch   PetscCall(PetscFree(bb));
7759566063dSJacob Faibussowitsch   PetscCall(PetscHeapDestroy(&h));
7769566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&bt));
7778a07c6f1SJed Brown 
7788a07c6f1SJed Brown   /* Column indices are in the list of free space */
7798a07c6f1SJed Brown   /* Allocate space for cj, initialize cj, and */
7808a07c6f1SJed Brown   /* destroy list of free space and other temporary array(s) */
7819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am], &cj));
7829566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space, cj));
7838a07c6f1SJed Brown 
7848a07c6f1SJed Brown   /* put together the new symbolic matrix */
7859566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C));
7869566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
7878a07c6f1SJed Brown 
7888a07c6f1SJed Brown   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
7898a07c6f1SJed Brown   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
7904222ddf1SHong Zhang   c          = (Mat_SeqAIJ *)(C->data);
7918a07c6f1SJed Brown   c->free_a  = PETSC_TRUE;
7928a07c6f1SJed Brown   c->free_ij = PETSC_TRUE;
7938a07c6f1SJed Brown   c->nonew   = 0;
79426fbe8dcSKarl Rupp 
7954222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
7968a07c6f1SJed Brown 
7978a07c6f1SJed Brown   /* set MatInfo */
7988a07c6f1SJed Brown   afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5;
7998a07c6f1SJed Brown   if (afill < 1.0) afill = 1.0;
8004222ddf1SHong Zhang   C->info.mallocs           = ndouble;
8014222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
8024222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
8038a07c6f1SJed Brown 
8048a07c6f1SJed Brown #if defined(PETSC_USE_INFO)
8058a07c6f1SJed Brown   if (ci[am]) {
8069566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill));
8079566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
8088a07c6f1SJed Brown   } else {
8099566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
8108a07c6f1SJed Brown   }
8118a07c6f1SJed Brown #endif
8123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
8138a07c6f1SJed Brown }
8148a07c6f1SJed Brown 
815d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(Mat A, Mat B, PetscReal fill, Mat C)
816d71ae5a4SJacob Faibussowitsch {
817d7ed1a4dSandi selinger   Mat_SeqAIJ     *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c;
818d7ed1a4dSandi selinger   const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j, *inputi, *inputj, *inputcol, *inputcol_L1;
819d7ed1a4dSandi selinger   PetscInt       *ci, *cj, *outputj, worki_L1[9], worki_L2[9];
820d7ed1a4dSandi selinger   PetscInt        c_maxmem, a_maxrownnz = 0, a_rownnz;
821d7ed1a4dSandi selinger   const PetscInt  workcol[8] = {0, 1, 2, 3, 4, 5, 6, 7};
822d7ed1a4dSandi selinger   const PetscInt  am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N;
823d7ed1a4dSandi selinger   const PetscInt *brow_ptr[8], *brow_end[8];
824d7ed1a4dSandi selinger   PetscInt        window[8];
825d7ed1a4dSandi selinger   PetscInt        window_min, old_window_min, ci_nnz, outputi_nnz = 0, L1_nrows, L2_nrows;
826d7ed1a4dSandi selinger   PetscInt        i, k, ndouble = 0, L1_rowsleft, rowsleft;
827d7ed1a4dSandi selinger   PetscReal       afill;
828f83700f2Sandi selinger   PetscInt       *workj_L1, *workj_L2, *workj_L3;
8297660c4dbSandi selinger   PetscInt        L1_nnz, L2_nnz;
830d7ed1a4dSandi selinger 
831d7ed1a4dSandi selinger   /* Step 1: Get upper bound on memory required for allocation.
832d7ed1a4dSandi selinger              Because of the way virtual memory works,
833d7ed1a4dSandi selinger              only the memory pages that are actually needed will be physically allocated. */
834d7ed1a4dSandi selinger   PetscFunctionBegin;
8359566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 1, &ci));
836d7ed1a4dSandi selinger   for (i = 0; i < am; i++) {
837d7ed1a4dSandi selinger     const PetscInt  anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
838d7ed1a4dSandi selinger     const PetscInt *acol = aj + ai[i];        /* column indices of nonzero entries in this row */
839d7ed1a4dSandi selinger     a_rownnz             = 0;
840d7ed1a4dSandi selinger     for (k = 0; k < anzi; ++k) {
841d7ed1a4dSandi selinger       a_rownnz += bi[acol[k] + 1] - bi[acol[k]];
842d7ed1a4dSandi selinger       if (a_rownnz > bn) {
843d7ed1a4dSandi selinger         a_rownnz = bn;
844d7ed1a4dSandi selinger         break;
845d7ed1a4dSandi selinger       }
846d7ed1a4dSandi selinger     }
847d7ed1a4dSandi selinger     a_maxrownnz = PetscMax(a_maxrownnz, a_rownnz);
848d7ed1a4dSandi selinger   }
849d7ed1a4dSandi selinger   /* temporary work areas for merging rows */
8509566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a_maxrownnz * 8, &workj_L1));
8519566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a_maxrownnz * 8, &workj_L2));
8529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a_maxrownnz, &workj_L3));
853d7ed1a4dSandi selinger 
8547660c4dbSandi selinger   /* This should be enough for almost all matrices. If not, memory is reallocated later. */
8557660c4dbSandi selinger   c_maxmem = 8 * (ai[am] + bi[bm]);
856d7ed1a4dSandi selinger   /* Step 2: Populate pattern for C */
8579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(c_maxmem, &cj));
858d7ed1a4dSandi selinger 
859d7ed1a4dSandi selinger   ci_nnz      = 0;
860d7ed1a4dSandi selinger   ci[0]       = 0;
861d7ed1a4dSandi selinger   worki_L1[0] = 0;
862d7ed1a4dSandi selinger   worki_L2[0] = 0;
863d7ed1a4dSandi selinger   for (i = 0; i < am; i++) {
864d7ed1a4dSandi selinger     const PetscInt  anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
865d7ed1a4dSandi selinger     const PetscInt *acol = aj + ai[i];        /* column indices of nonzero entries in this row */
866d7ed1a4dSandi selinger     rowsleft             = anzi;
867d7ed1a4dSandi selinger     inputcol_L1          = acol;
868d7ed1a4dSandi selinger     L2_nnz               = 0;
8697660c4dbSandi selinger     L2_nrows             = 1; /* Number of rows to be merged on Level 3. output of L3 already exists -> initial value 1   */
8707660c4dbSandi selinger     worki_L2[1]          = 0;
87108fe1b3cSKarl Rupp     outputi_nnz          = 0;
872d7ed1a4dSandi selinger 
873d7ed1a4dSandi selinger     /* If the number of indices in C so far + the max number of columns in the next row > c_maxmem  -> allocate more memory */
874d7ed1a4dSandi selinger     while (ci_nnz + a_maxrownnz > c_maxmem) {
875d7ed1a4dSandi selinger       c_maxmem *= 2;
876d7ed1a4dSandi selinger       ndouble++;
8779566063dSJacob Faibussowitsch       PetscCall(PetscRealloc(sizeof(PetscInt) * c_maxmem, &cj));
878d7ed1a4dSandi selinger     }
879d7ed1a4dSandi selinger 
880d7ed1a4dSandi selinger     while (rowsleft) {
881d7ed1a4dSandi selinger       L1_rowsleft = PetscMin(64, rowsleft); /* In the inner loop max 64 rows of B can be merged */
882d7ed1a4dSandi selinger       L1_nrows    = 0;
8837660c4dbSandi selinger       L1_nnz      = 0;
884d7ed1a4dSandi selinger       inputcol    = inputcol_L1;
885d7ed1a4dSandi selinger       inputi      = bi;
886d7ed1a4dSandi selinger       inputj      = bj;
887d7ed1a4dSandi selinger 
888d7ed1a4dSandi selinger       /* The following macro is used to specialize for small rows in A.
889d7ed1a4dSandi selinger          This helps with compiler unrolling, improving performance substantially.
890f83700f2Sandi selinger           Input:  inputj   inputi  inputcol  bn
891d7ed1a4dSandi selinger           Output: outputj  outputi_nnz                       */
892d7ed1a4dSandi selinger #define MatMatMultSymbolic_RowMergeMacro(ANNZ) \
893d7ed1a4dSandi selinger   window_min  = bn; \
8947660c4dbSandi selinger   outputi_nnz = 0; \
8957660c4dbSandi selinger   for (k = 0; k < ANNZ; ++k) { \
896d7ed1a4dSandi selinger     brow_ptr[k] = inputj + inputi[inputcol[k]]; \
897d7ed1a4dSandi selinger     brow_end[k] = inputj + inputi[inputcol[k] + 1]; \
898d7ed1a4dSandi selinger     window[k]   = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \
899d7ed1a4dSandi selinger     window_min  = PetscMin(window[k], window_min); \
900d7ed1a4dSandi selinger   } \
901d7ed1a4dSandi selinger   while (window_min < bn) { \
902d7ed1a4dSandi selinger     outputj[outputi_nnz++] = window_min; \
903d7ed1a4dSandi selinger     /* advance front and compute new minimum */ \
904d7ed1a4dSandi selinger     old_window_min = window_min; \
905d7ed1a4dSandi selinger     window_min     = bn; \
906d7ed1a4dSandi selinger     for (k = 0; k < ANNZ; ++k) { \
907d7ed1a4dSandi selinger       if (window[k] == old_window_min) { \
908d7ed1a4dSandi selinger         brow_ptr[k]++; \
909d7ed1a4dSandi selinger         window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \
910d7ed1a4dSandi selinger       } \
911d7ed1a4dSandi selinger       window_min = PetscMin(window[k], window_min); \
912d7ed1a4dSandi selinger     } \
913d7ed1a4dSandi selinger   }
914d7ed1a4dSandi selinger 
915d7ed1a4dSandi selinger       /************** L E V E L  1 ***************/
916d7ed1a4dSandi selinger       /* Merge up to 8 rows of B to L1 work array*/
917d7ed1a4dSandi selinger       while (L1_rowsleft) {
9187660c4dbSandi selinger         outputi_nnz = 0;
9197660c4dbSandi selinger         if (anzi > 8) outputj = workj_L1 + L1_nnz; /* Level 1 rowmerge*/
9207660c4dbSandi selinger         else outputj = cj + ci_nnz;                /* Merge directly to C */
9217660c4dbSandi selinger 
922d7ed1a4dSandi selinger         switch (L1_rowsleft) {
9239371c9d4SSatish Balay         case 1:
9249371c9d4SSatish Balay           brow_ptr[0] = inputj + inputi[inputcol[0]];
925d7ed1a4dSandi selinger           brow_end[0] = inputj + inputi[inputcol[0] + 1];
926d7ed1a4dSandi selinger           for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */
927d7ed1a4dSandi selinger           inputcol += L1_rowsleft;
928d7ed1a4dSandi selinger           rowsleft -= L1_rowsleft;
929d7ed1a4dSandi selinger           L1_rowsleft = 0;
930d7ed1a4dSandi selinger           break;
9319371c9d4SSatish Balay         case 2:
9329371c9d4SSatish Balay           MatMatMultSymbolic_RowMergeMacro(2);
933d7ed1a4dSandi selinger           inputcol += L1_rowsleft;
934d7ed1a4dSandi selinger           rowsleft -= L1_rowsleft;
935d7ed1a4dSandi selinger           L1_rowsleft = 0;
936d7ed1a4dSandi selinger           break;
9379371c9d4SSatish Balay         case 3:
9389371c9d4SSatish Balay           MatMatMultSymbolic_RowMergeMacro(3);
939d7ed1a4dSandi selinger           inputcol += L1_rowsleft;
940d7ed1a4dSandi selinger           rowsleft -= L1_rowsleft;
941d7ed1a4dSandi selinger           L1_rowsleft = 0;
942d7ed1a4dSandi selinger           break;
9439371c9d4SSatish Balay         case 4:
9449371c9d4SSatish Balay           MatMatMultSymbolic_RowMergeMacro(4);
945d7ed1a4dSandi selinger           inputcol += L1_rowsleft;
946d7ed1a4dSandi selinger           rowsleft -= L1_rowsleft;
947d7ed1a4dSandi selinger           L1_rowsleft = 0;
948d7ed1a4dSandi selinger           break;
9499371c9d4SSatish Balay         case 5:
9509371c9d4SSatish Balay           MatMatMultSymbolic_RowMergeMacro(5);
951d7ed1a4dSandi selinger           inputcol += L1_rowsleft;
952d7ed1a4dSandi selinger           rowsleft -= L1_rowsleft;
953d7ed1a4dSandi selinger           L1_rowsleft = 0;
954d7ed1a4dSandi selinger           break;
9559371c9d4SSatish Balay         case 6:
9569371c9d4SSatish Balay           MatMatMultSymbolic_RowMergeMacro(6);
957d7ed1a4dSandi selinger           inputcol += L1_rowsleft;
958d7ed1a4dSandi selinger           rowsleft -= L1_rowsleft;
959d7ed1a4dSandi selinger           L1_rowsleft = 0;
960d7ed1a4dSandi selinger           break;
9619371c9d4SSatish Balay         case 7:
9629371c9d4SSatish Balay           MatMatMultSymbolic_RowMergeMacro(7);
963d7ed1a4dSandi selinger           inputcol += L1_rowsleft;
964d7ed1a4dSandi selinger           rowsleft -= L1_rowsleft;
965d7ed1a4dSandi selinger           L1_rowsleft = 0;
966d7ed1a4dSandi selinger           break;
9679371c9d4SSatish Balay         default:
9689371c9d4SSatish Balay           MatMatMultSymbolic_RowMergeMacro(8);
969d7ed1a4dSandi selinger           inputcol += 8;
970d7ed1a4dSandi selinger           rowsleft -= 8;
971d7ed1a4dSandi selinger           L1_rowsleft -= 8;
972d7ed1a4dSandi selinger           break;
973d7ed1a4dSandi selinger         }
974d7ed1a4dSandi selinger         inputcol_L1 = inputcol;
9757660c4dbSandi selinger         L1_nnz += outputi_nnz;
9767660c4dbSandi selinger         worki_L1[++L1_nrows] = L1_nnz;
977d7ed1a4dSandi selinger       }
978d7ed1a4dSandi selinger 
979d7ed1a4dSandi selinger       /********************** L E V E L  2 ************************/
980d7ed1a4dSandi selinger       /* Merge from L1 work array to either C or to L2 work array */
981d7ed1a4dSandi selinger       if (anzi > 8) {
982d7ed1a4dSandi selinger         inputi      = worki_L1;
983d7ed1a4dSandi selinger         inputj      = workj_L1;
984d7ed1a4dSandi selinger         inputcol    = workcol;
985d7ed1a4dSandi selinger         outputi_nnz = 0;
986d7ed1a4dSandi selinger 
987d7ed1a4dSandi selinger         if (anzi <= 64) outputj = cj + ci_nnz; /* Merge from L1 work array to C */
988d7ed1a4dSandi selinger         else outputj = workj_L2 + L2_nnz;      /* Merge from L1 work array to L2 work array */
989d7ed1a4dSandi selinger 
990d7ed1a4dSandi selinger         switch (L1_nrows) {
9919371c9d4SSatish Balay         case 1:
9929371c9d4SSatish Balay           brow_ptr[0] = inputj + inputi[inputcol[0]];
993d7ed1a4dSandi selinger           brow_end[0] = inputj + inputi[inputcol[0] + 1];
994d7ed1a4dSandi selinger           for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */
995d7ed1a4dSandi selinger           break;
996d71ae5a4SJacob Faibussowitsch         case 2:
997d71ae5a4SJacob Faibussowitsch           MatMatMultSymbolic_RowMergeMacro(2);
998d71ae5a4SJacob Faibussowitsch           break;
999d71ae5a4SJacob Faibussowitsch         case 3:
1000d71ae5a4SJacob Faibussowitsch           MatMatMultSymbolic_RowMergeMacro(3);
1001d71ae5a4SJacob Faibussowitsch           break;
1002d71ae5a4SJacob Faibussowitsch         case 4:
1003d71ae5a4SJacob Faibussowitsch           MatMatMultSymbolic_RowMergeMacro(4);
1004d71ae5a4SJacob Faibussowitsch           break;
1005d71ae5a4SJacob Faibussowitsch         case 5:
1006d71ae5a4SJacob Faibussowitsch           MatMatMultSymbolic_RowMergeMacro(5);
1007d71ae5a4SJacob Faibussowitsch           break;
1008d71ae5a4SJacob Faibussowitsch         case 6:
1009d71ae5a4SJacob Faibussowitsch           MatMatMultSymbolic_RowMergeMacro(6);
1010d71ae5a4SJacob Faibussowitsch           break;
1011d71ae5a4SJacob Faibussowitsch         case 7:
1012d71ae5a4SJacob Faibussowitsch           MatMatMultSymbolic_RowMergeMacro(7);
1013d71ae5a4SJacob Faibussowitsch           break;
1014d71ae5a4SJacob Faibussowitsch         case 8:
1015d71ae5a4SJacob Faibussowitsch           MatMatMultSymbolic_RowMergeMacro(8);
1016d71ae5a4SJacob Faibussowitsch           break;
1017d71ae5a4SJacob Faibussowitsch         default:
1018d71ae5a4SJacob Faibussowitsch           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatMatMult logic error: Not merging 1-8 rows from L1 work array!");
1019d7ed1a4dSandi selinger         }
1020d7ed1a4dSandi selinger         L2_nnz += outputi_nnz;
1021d7ed1a4dSandi selinger         worki_L2[++L2_nrows] = L2_nnz;
1022d7ed1a4dSandi selinger 
10237660c4dbSandi selinger         /************************ L E V E L  3 **********************/
10247660c4dbSandi selinger         /* Merge from L2 work array to either C or to L2 work array */
1025d7ed1a4dSandi selinger         if (anzi > 64 && (L2_nrows == 8 || rowsleft == 0)) {
1026d7ed1a4dSandi selinger           inputi      = worki_L2;
1027d7ed1a4dSandi selinger           inputj      = workj_L2;
1028d7ed1a4dSandi selinger           inputcol    = workcol;
1029d7ed1a4dSandi selinger           outputi_nnz = 0;
1030f83700f2Sandi selinger           if (rowsleft) outputj = workj_L3;
1031d7ed1a4dSandi selinger           else outputj = cj + ci_nnz;
1032d7ed1a4dSandi selinger           switch (L2_nrows) {
10339371c9d4SSatish Balay           case 1:
10349371c9d4SSatish Balay             brow_ptr[0] = inputj + inputi[inputcol[0]];
1035d7ed1a4dSandi selinger             brow_end[0] = inputj + inputi[inputcol[0] + 1];
1036d7ed1a4dSandi selinger             for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */
1037d7ed1a4dSandi selinger             break;
1038d71ae5a4SJacob Faibussowitsch           case 2:
1039d71ae5a4SJacob Faibussowitsch             MatMatMultSymbolic_RowMergeMacro(2);
1040d71ae5a4SJacob Faibussowitsch             break;
1041d71ae5a4SJacob Faibussowitsch           case 3:
1042d71ae5a4SJacob Faibussowitsch             MatMatMultSymbolic_RowMergeMacro(3);
1043d71ae5a4SJacob Faibussowitsch             break;
1044d71ae5a4SJacob Faibussowitsch           case 4:
1045d71ae5a4SJacob Faibussowitsch             MatMatMultSymbolic_RowMergeMacro(4);
1046d71ae5a4SJacob Faibussowitsch             break;
1047d71ae5a4SJacob Faibussowitsch           case 5:
1048d71ae5a4SJacob Faibussowitsch             MatMatMultSymbolic_RowMergeMacro(5);
1049d71ae5a4SJacob Faibussowitsch             break;
1050d71ae5a4SJacob Faibussowitsch           case 6:
1051d71ae5a4SJacob Faibussowitsch             MatMatMultSymbolic_RowMergeMacro(6);
1052d71ae5a4SJacob Faibussowitsch             break;
1053d71ae5a4SJacob Faibussowitsch           case 7:
1054d71ae5a4SJacob Faibussowitsch             MatMatMultSymbolic_RowMergeMacro(7);
1055d71ae5a4SJacob Faibussowitsch             break;
1056d71ae5a4SJacob Faibussowitsch           case 8:
1057d71ae5a4SJacob Faibussowitsch             MatMatMultSymbolic_RowMergeMacro(8);
1058d71ae5a4SJacob Faibussowitsch             break;
1059d71ae5a4SJacob Faibussowitsch           default:
1060d71ae5a4SJacob Faibussowitsch             SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatMatMult logic error: Not merging 1-8 rows from L2 work array!");
1061d7ed1a4dSandi selinger           }
1062d7ed1a4dSandi selinger           L2_nrows    = 1;
10637660c4dbSandi selinger           L2_nnz      = outputi_nnz;
10647660c4dbSandi selinger           worki_L2[1] = outputi_nnz;
10657660c4dbSandi selinger           /* Copy to workj_L2 */
1066d7ed1a4dSandi selinger           if (rowsleft) {
10677660c4dbSandi selinger             for (k = 0; k < outputi_nnz; ++k) workj_L2[k] = outputj[k];
1068d7ed1a4dSandi selinger           }
1069d7ed1a4dSandi selinger         }
1070d7ed1a4dSandi selinger       }
1071d7ed1a4dSandi selinger     } /* while (rowsleft) */
1072d7ed1a4dSandi selinger #undef MatMatMultSymbolic_RowMergeMacro
1073d7ed1a4dSandi selinger 
1074d7ed1a4dSandi selinger     /* terminate current row */
1075d7ed1a4dSandi selinger     ci_nnz += outputi_nnz;
1076d7ed1a4dSandi selinger     ci[i + 1] = ci_nnz;
1077d7ed1a4dSandi selinger   }
1078d7ed1a4dSandi selinger 
1079d7ed1a4dSandi selinger   /* Step 3: Create the new symbolic matrix */
10809566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C));
10819566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
1082d7ed1a4dSandi selinger 
1083d7ed1a4dSandi selinger   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
1084d7ed1a4dSandi selinger   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
10854222ddf1SHong Zhang   c          = (Mat_SeqAIJ *)(C->data);
1086d7ed1a4dSandi selinger   c->free_a  = PETSC_TRUE;
1087d7ed1a4dSandi selinger   c->free_ij = PETSC_TRUE;
1088d7ed1a4dSandi selinger   c->nonew   = 0;
1089d7ed1a4dSandi selinger 
10904222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
1091d7ed1a4dSandi selinger 
1092d7ed1a4dSandi selinger   /* set MatInfo */
1093d7ed1a4dSandi selinger   afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5;
1094d7ed1a4dSandi selinger   if (afill < 1.0) afill = 1.0;
10954222ddf1SHong Zhang   C->info.mallocs           = ndouble;
10964222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
10974222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1098d7ed1a4dSandi selinger 
1099d7ed1a4dSandi selinger #if defined(PETSC_USE_INFO)
1100d7ed1a4dSandi selinger   if (ci[am]) {
11019566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill));
11029566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1103d7ed1a4dSandi selinger   } else {
11049566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1105d7ed1a4dSandi selinger   }
1106d7ed1a4dSandi selinger #endif
1107d7ed1a4dSandi selinger 
1108d7ed1a4dSandi selinger   /* Step 4: Free temporary work areas */
11099566063dSJacob Faibussowitsch   PetscCall(PetscFree(workj_L1));
11109566063dSJacob Faibussowitsch   PetscCall(PetscFree(workj_L2));
11119566063dSJacob Faibussowitsch   PetscCall(PetscFree(workj_L3));
11123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1113d7ed1a4dSandi selinger }
1114d7ed1a4dSandi selinger 
1115cd093f1dSJed Brown /* concatenate unique entries and then sort */
1116d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(Mat A, Mat B, PetscReal fill, Mat C)
1117d71ae5a4SJacob Faibussowitsch {
1118cd093f1dSJed Brown   Mat_SeqAIJ     *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c;
1119cd093f1dSJed Brown   const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j;
11208c78258cSHong Zhang   PetscInt       *ci, *cj, bcol;
1121cd093f1dSJed Brown   PetscInt        am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N;
1122cd093f1dSJed Brown   PetscReal       afill;
1123cd093f1dSJed Brown   PetscInt        i, j, ndouble = 0;
1124cd093f1dSJed Brown   PetscSegBuffer  seg, segrow;
1125cd093f1dSJed Brown   char           *seen;
1126cd093f1dSJed Brown 
1127cd093f1dSJed Brown   PetscFunctionBegin;
11289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am + 1, &ci));
1129cd093f1dSJed Brown   ci[0] = 0;
1130cd093f1dSJed Brown 
1131cd093f1dSJed Brown   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
11329566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferCreate(sizeof(PetscInt), (PetscInt)(fill * (ai[am] + bi[bm])), &seg));
11339566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferCreate(sizeof(PetscInt), 100, &segrow));
11349566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bn, &seen));
1135cd093f1dSJed Brown 
1136cd093f1dSJed Brown   /* Determine ci and cj */
1137cd093f1dSJed Brown   for (i = 0; i < am; i++) {
1138cd093f1dSJed Brown     const PetscInt  anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
1139cd093f1dSJed Brown     const PetscInt *acol = aj + ai[i];        /* column indices of nonzero entries in this row */
1140cd093f1dSJed Brown     PetscInt packlen     = 0, *PETSC_RESTRICT crow;
11418c78258cSHong Zhang 
1142cd093f1dSJed Brown     /* Pack segrow */
1143cd093f1dSJed Brown     for (j = 0; j < anzi; j++) {
1144cd093f1dSJed Brown       PetscInt brow = acol[j], bjstart = bi[brow], bjend = bi[brow + 1], k;
1145cd093f1dSJed Brown       for (k = bjstart; k < bjend; k++) {
11468c78258cSHong Zhang         bcol = bj[k];
1147cd093f1dSJed Brown         if (!seen[bcol]) { /* new entry */
1148cd093f1dSJed Brown           PetscInt *PETSC_RESTRICT slot;
11499566063dSJacob Faibussowitsch           PetscCall(PetscSegBufferGetInts(segrow, 1, &slot));
1150cd093f1dSJed Brown           *slot      = bcol;
1151cd093f1dSJed Brown           seen[bcol] = 1;
1152cd093f1dSJed Brown           packlen++;
1153cd093f1dSJed Brown         }
1154cd093f1dSJed Brown       }
1155cd093f1dSJed Brown     }
11568c78258cSHong Zhang 
11578c78258cSHong Zhang     /* Check i-th diagonal entry */
11588c78258cSHong Zhang     if (C->force_diagonals && !seen[i]) {
11598c78258cSHong Zhang       PetscInt *PETSC_RESTRICT slot;
11609566063dSJacob Faibussowitsch       PetscCall(PetscSegBufferGetInts(segrow, 1, &slot));
11618c78258cSHong Zhang       *slot   = i;
11628c78258cSHong Zhang       seen[i] = 1;
11638c78258cSHong Zhang       packlen++;
11648c78258cSHong Zhang     }
11658c78258cSHong Zhang 
11669566063dSJacob Faibussowitsch     PetscCall(PetscSegBufferGetInts(seg, packlen, &crow));
11679566063dSJacob Faibussowitsch     PetscCall(PetscSegBufferExtractTo(segrow, crow));
11689566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(packlen, crow));
1169cd093f1dSJed Brown     ci[i + 1] = ci[i] + packlen;
1170cd093f1dSJed Brown     for (j = 0; j < packlen; j++) seen[crow[j]] = 0;
1171cd093f1dSJed Brown   }
11729566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferDestroy(&segrow));
11739566063dSJacob Faibussowitsch   PetscCall(PetscFree(seen));
1174cd093f1dSJed Brown 
1175cd093f1dSJed Brown   /* Column indices are in the segmented buffer */
11769566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferExtractAlloc(seg, &cj));
11779566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferDestroy(&seg));
1178cd093f1dSJed Brown 
1179cd093f1dSJed Brown   /* put together the new symbolic matrix */
11809566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C));
11819566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C, A, B));
1182cd093f1dSJed Brown 
1183cd093f1dSJed Brown   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
1184cd093f1dSJed Brown   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
11854222ddf1SHong Zhang   c          = (Mat_SeqAIJ *)(C->data);
1186cd093f1dSJed Brown   c->free_a  = PETSC_TRUE;
1187cd093f1dSJed Brown   c->free_ij = PETSC_TRUE;
1188cd093f1dSJed Brown   c->nonew   = 0;
1189cd093f1dSJed Brown 
11904222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
1191cd093f1dSJed Brown 
1192cd093f1dSJed Brown   /* set MatInfo */
11932a09556fSStefano Zampini   afill = (PetscReal)ci[am] / PetscMax(ai[am] + bi[bm], 1) + 1.e-5;
1194cd093f1dSJed Brown   if (afill < 1.0) afill = 1.0;
11954222ddf1SHong Zhang   C->info.mallocs           = ndouble;
11964222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
11974222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1198cd093f1dSJed Brown 
1199cd093f1dSJed Brown #if defined(PETSC_USE_INFO)
1200cd093f1dSJed Brown   if (ci[am]) {
12019566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill));
12029566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill));
1203cd093f1dSJed Brown   } else {
12049566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C, "Empty matrix product\n"));
1205cd093f1dSJed Brown   }
1206cd093f1dSJed Brown #endif
12073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1208cd093f1dSJed Brown }
1209cd093f1dSJed Brown 
1210d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqAIJ_MatMatMultTrans(void *data)
1211d71ae5a4SJacob Faibussowitsch {
12126718818eSStefano Zampini   Mat_MatMatTransMult *abt = (Mat_MatMatTransMult *)data;
12132128a86cSHong Zhang 
12142128a86cSHong Zhang   PetscFunctionBegin;
12159566063dSJacob Faibussowitsch   PetscCall(MatTransposeColoringDestroy(&abt->matcoloring));
12169566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&abt->Bt_den));
12179566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&abt->ABt_den));
12189566063dSJacob Faibussowitsch   PetscCall(PetscFree(abt));
12193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
12202128a86cSHong Zhang }
12212128a86cSHong Zhang 
1222d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C)
1223d71ae5a4SJacob Faibussowitsch {
122481d82fe4SHong Zhang   Mat                  Bt;
122540192850SHong Zhang   Mat_MatMatTransMult *abt;
12264222ddf1SHong Zhang   Mat_Product         *product = C->product;
12276718818eSStefano Zampini   char                *alg;
1228d2853540SHong Zhang 
122981d82fe4SHong Zhang   PetscFunctionBegin;
123028b400f6SJacob Faibussowitsch   PetscCheck(product, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct");
123128b400f6SJacob Faibussowitsch   PetscCheck(!product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
12326718818eSStefano Zampini 
123381d82fe4SHong Zhang   /* create symbolic Bt */
12347fb60732SBarry Smith   PetscCall(MatTransposeSymbolic(B, &Bt));
12359566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(Bt, PetscAbs(A->cmap->bs), PetscAbs(B->cmap->bs)));
12369566063dSJacob Faibussowitsch   PetscCall(MatSetType(Bt, ((PetscObject)A)->type_name));
123781d82fe4SHong Zhang 
123881d82fe4SHong Zhang   /* get symbolic C=A*Bt */
12399566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(product->alg, &alg));
12409566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(C, "sorted")); /* set algorithm for C = A*Bt */
12419566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(A, Bt, fill, C));
12429566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(C, alg)); /* resume original algorithm for ABt product */
12439566063dSJacob Faibussowitsch   PetscCall(PetscFree(alg));
124481d82fe4SHong Zhang 
1245a5b23f4aSJose E. Roman   /* create a supporting struct for reuse intermediate dense matrices with matcoloring */
12469566063dSJacob Faibussowitsch   PetscCall(PetscNew(&abt));
12472128a86cSHong Zhang 
12486718818eSStefano Zampini   product->data    = abt;
12496718818eSStefano Zampini   product->destroy = MatDestroy_SeqAIJ_MatMatMultTrans;
12506718818eSStefano Zampini 
12514222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ;
12522128a86cSHong Zhang 
12534222ddf1SHong Zhang   abt->usecoloring = PETSC_FALSE;
12549566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "color", &abt->usecoloring));
125540192850SHong Zhang   if (abt->usecoloring) {
1256b9af6bddSHong Zhang     /* Create MatTransposeColoring from symbolic C=A*B^T */
1257b9af6bddSHong Zhang     MatTransposeColoring matcoloring;
1258335efc43SPeter Brune     MatColoring          coloring;
12592128a86cSHong Zhang     ISColoring           iscoloring;
12602128a86cSHong Zhang     Mat                  Bt_dense, C_dense;
1261e8354b3eSHong Zhang 
12624222ddf1SHong Zhang     /* inode causes memory problem */
12639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(C, MAT_USE_INODES, PETSC_FALSE));
12644222ddf1SHong Zhang 
12659566063dSJacob Faibussowitsch     PetscCall(MatColoringCreate(C, &coloring));
12669566063dSJacob Faibussowitsch     PetscCall(MatColoringSetDistance(coloring, 2));
12679566063dSJacob Faibussowitsch     PetscCall(MatColoringSetType(coloring, MATCOLORINGSL));
12689566063dSJacob Faibussowitsch     PetscCall(MatColoringSetFromOptions(coloring));
12699566063dSJacob Faibussowitsch     PetscCall(MatColoringApply(coloring, &iscoloring));
12709566063dSJacob Faibussowitsch     PetscCall(MatColoringDestroy(&coloring));
12719566063dSJacob Faibussowitsch     PetscCall(MatTransposeColoringCreate(C, iscoloring, &matcoloring));
12722205254eSKarl Rupp 
127340192850SHong Zhang     abt->matcoloring = matcoloring;
12742205254eSKarl Rupp 
12759566063dSJacob Faibussowitsch     PetscCall(ISColoringDestroy(&iscoloring));
12762128a86cSHong Zhang 
12772128a86cSHong Zhang     /* Create Bt_dense and C_dense = A*Bt_dense */
12789566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &Bt_dense));
12799566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(Bt_dense, A->cmap->n, matcoloring->ncolors, A->cmap->n, matcoloring->ncolors));
12809566063dSJacob Faibussowitsch     PetscCall(MatSetType(Bt_dense, MATSEQDENSE));
12819566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(Bt_dense, NULL));
12822205254eSKarl Rupp 
12832128a86cSHong Zhang     Bt_dense->assembled = PETSC_TRUE;
128440192850SHong Zhang     abt->Bt_den         = Bt_dense;
12852128a86cSHong Zhang 
12869566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &C_dense));
12879566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(C_dense, A->rmap->n, matcoloring->ncolors, A->rmap->n, matcoloring->ncolors));
12889566063dSJacob Faibussowitsch     PetscCall(MatSetType(C_dense, MATSEQDENSE));
12899566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(C_dense, NULL));
12902205254eSKarl Rupp 
12912128a86cSHong Zhang     Bt_dense->assembled = PETSC_TRUE;
129240192850SHong Zhang     abt->ABt_den        = C_dense;
1293f94ccd6cSHong Zhang 
1294f94ccd6cSHong Zhang #if defined(PETSC_USE_INFO)
12951ce71dffSSatish Balay     {
12964222ddf1SHong Zhang       Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data;
12979371c9d4SSatish Balay       PetscCall(PetscInfo(C, "Use coloring of C=A*B^T; B^T: %" PetscInt_FMT " %" PetscInt_FMT ", Bt_dense: %" PetscInt_FMT ",%" PetscInt_FMT "; Cnz %" PetscInt_FMT " / (cm*ncolors %" PetscInt_FMT ") = %g\n", B->cmap->n, B->rmap->n, Bt_dense->rmap->n,
12989371c9d4SSatish Balay                           Bt_dense->cmap->n, c->nz, A->rmap->n * matcoloring->ncolors, (double)(((PetscReal)(c->nz)) / ((PetscReal)(A->rmap->n * matcoloring->ncolors)))));
12991ce71dffSSatish Balay     }
1300f94ccd6cSHong Zhang #endif
13012128a86cSHong Zhang   }
1302e99be685SHong Zhang   /* clean up */
13039566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
13043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13055df89d91SHong Zhang }
13065df89d91SHong Zhang 
1307d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C)
1308d71ae5a4SJacob Faibussowitsch {
13095df89d91SHong Zhang   Mat_SeqAIJ          *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c = (Mat_SeqAIJ *)C->data;
1310e2cac8caSJed Brown   PetscInt            *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, anzi, bnzj, nexta, nextb, *acol, *bcol, brow;
131181d82fe4SHong Zhang   PetscInt             cm = C->rmap->n, *ci = c->i, *cj = c->j, i, j, cnzi, *ccol;
13125df89d91SHong Zhang   PetscLogDouble       flops = 0.0;
1313aa1aec99SHong Zhang   MatScalar           *aa = a->a, *aval, *ba = b->a, *bval, *ca, *cval;
13146718818eSStefano Zampini   Mat_MatMatTransMult *abt;
13156718818eSStefano Zampini   Mat_Product         *product = C->product;
13165df89d91SHong Zhang 
13175df89d91SHong Zhang   PetscFunctionBegin;
131828b400f6SJacob Faibussowitsch   PetscCheck(product, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct");
13196718818eSStefano Zampini   abt = (Mat_MatMatTransMult *)product->data;
132028b400f6SJacob Faibussowitsch   PetscCheck(abt, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct");
132158ed3ceaSHong Zhang   /* clear old values in C */
132258ed3ceaSHong Zhang   if (!c->a) {
13239566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(ci[cm] + 1, &ca));
132458ed3ceaSHong Zhang     c->a      = ca;
132558ed3ceaSHong Zhang     c->free_a = PETSC_TRUE;
132658ed3ceaSHong Zhang   } else {
132758ed3ceaSHong Zhang     ca = c->a;
13289566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ca, ci[cm] + 1));
132958ed3ceaSHong Zhang   }
133058ed3ceaSHong Zhang 
133140192850SHong Zhang   if (abt->usecoloring) {
133240192850SHong Zhang     MatTransposeColoring matcoloring = abt->matcoloring;
133340192850SHong Zhang     Mat                  Bt_dense, C_dense = abt->ABt_den;
1334c8db22f6SHong Zhang 
1335b9af6bddSHong Zhang     /* Get Bt_dense by Apply MatTransposeColoring to B */
133640192850SHong Zhang     Bt_dense = abt->Bt_den;
13379566063dSJacob Faibussowitsch     PetscCall(MatTransColoringApplySpToDen(matcoloring, B, Bt_dense));
1338c8db22f6SHong Zhang 
1339c8db22f6SHong Zhang     /* C_dense = A*Bt_dense */
13409566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumeric_SeqAIJ_SeqDense(A, Bt_dense, C_dense));
1341c8db22f6SHong Zhang 
13422128a86cSHong Zhang     /* Recover C from C_dense */
13439566063dSJacob Faibussowitsch     PetscCall(MatTransColoringApplyDenToSp(matcoloring, C_dense, C));
13443ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
1345c8db22f6SHong Zhang   }
1346c8db22f6SHong Zhang 
13471fa1209cSHong Zhang   for (i = 0; i < cm; i++) {
134881d82fe4SHong Zhang     anzi = ai[i + 1] - ai[i];
134981d82fe4SHong Zhang     acol = aj + ai[i];
13506973769bSHong Zhang     aval = aa + ai[i];
13511fa1209cSHong Zhang     cnzi = ci[i + 1] - ci[i];
13521fa1209cSHong Zhang     ccol = cj + ci[i];
13536973769bSHong Zhang     cval = ca + ci[i];
13541fa1209cSHong Zhang     for (j = 0; j < cnzi; j++) {
135581d82fe4SHong Zhang       brow = ccol[j];
135681d82fe4SHong Zhang       bnzj = bi[brow + 1] - bi[brow];
135781d82fe4SHong Zhang       bcol = bj + bi[brow];
13586973769bSHong Zhang       bval = ba + bi[brow];
13596973769bSHong Zhang 
136081d82fe4SHong Zhang       /* perform sparse inner-product c(i,j)=A[i,:]*B[j,:]^T */
13619371c9d4SSatish Balay       nexta = 0;
13629371c9d4SSatish Balay       nextb = 0;
136381d82fe4SHong Zhang       while (nexta < anzi && nextb < bnzj) {
13647b6d5e96SMark Adams         while (nexta < anzi && acol[nexta] < bcol[nextb]) nexta++;
136581d82fe4SHong Zhang         if (nexta == anzi) break;
13667b6d5e96SMark Adams         while (nextb < bnzj && acol[nexta] > bcol[nextb]) nextb++;
136781d82fe4SHong Zhang         if (nextb == bnzj) break;
136881d82fe4SHong Zhang         if (acol[nexta] == bcol[nextb]) {
13696973769bSHong Zhang           cval[j] += aval[nexta] * bval[nextb];
13709371c9d4SSatish Balay           nexta++;
13719371c9d4SSatish Balay           nextb++;
137281d82fe4SHong Zhang           flops += 2;
13731fa1209cSHong Zhang         }
13741fa1209cSHong Zhang       }
137581d82fe4SHong Zhang     }
137681d82fe4SHong Zhang   }
13779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
13789566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
13799566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
13803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13815df89d91SHong Zhang }
13825df89d91SHong Zhang 
1383d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqAIJ_MatTransMatMult(void *data)
1384d71ae5a4SJacob Faibussowitsch {
13856718818eSStefano Zampini   Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)data;
13866d373c3eSHong Zhang 
13876d373c3eSHong Zhang   PetscFunctionBegin;
13889566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&atb->At));
13891baa6e33SBarry Smith   if (atb->destroy) PetscCall((*atb->destroy)(atb->data));
13909566063dSJacob Faibussowitsch   PetscCall(PetscFree(atb));
13913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13926d373c3eSHong Zhang }
13936d373c3eSHong Zhang 
1394d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C)
1395d71ae5a4SJacob Faibussowitsch {
1396089a957eSStefano Zampini   Mat          At      = NULL;
13974222ddf1SHong Zhang   Mat_Product *product = C->product;
1398089a957eSStefano Zampini   PetscBool    flg, def, square;
1399bc011b1eSHong Zhang 
1400bc011b1eSHong Zhang   PetscFunctionBegin;
1401089a957eSStefano Zampini   MatCheckProduct(C, 4);
1402b94d7dedSBarry Smith   square = (PetscBool)(A == B && A->symmetric == PETSC_BOOL3_TRUE);
14034222ddf1SHong Zhang   /* outerproduct */
14049566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "outerproduct", &flg));
14054222ddf1SHong Zhang   if (flg) {
1406bc011b1eSHong Zhang     /* create symbolic At */
1407089a957eSStefano Zampini     if (!square) {
14087fb60732SBarry Smith       PetscCall(MatTransposeSymbolic(A, &At));
14099566063dSJacob Faibussowitsch       PetscCall(MatSetBlockSizes(At, PetscAbs(A->cmap->bs), PetscAbs(B->cmap->bs)));
14109566063dSJacob Faibussowitsch       PetscCall(MatSetType(At, ((PetscObject)A)->type_name));
1411089a957eSStefano Zampini     }
1412bc011b1eSHong Zhang     /* get symbolic C=At*B */
14139566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, "sorted"));
14149566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At, B, fill, C));
1415bc011b1eSHong Zhang 
1416bc011b1eSHong Zhang     /* clean up */
141748a46eb9SPierre Jolivet     if (!square) PetscCall(MatDestroy(&At));
14186d373c3eSHong Zhang 
14194222ddf1SHong Zhang     C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ; /* outerproduct */
14209566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, "outerproduct"));
14213ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
14224222ddf1SHong Zhang   }
14234222ddf1SHong Zhang 
14244222ddf1SHong Zhang   /* matmatmult */
14259566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "default", &def));
14269566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "at*b", &flg));
1427089a957eSStefano Zampini   if (flg || def) {
14284222ddf1SHong Zhang     Mat_MatTransMatMult *atb;
14294222ddf1SHong Zhang 
143028b400f6SJacob Faibussowitsch     PetscCheck(!product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty");
14319566063dSJacob Faibussowitsch     PetscCall(PetscNew(&atb));
143248a46eb9SPierre Jolivet     if (!square) PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At));
14339566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, "sorted"));
14349566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At, B, fill, C));
14359566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, "at*b"));
14366718818eSStefano Zampini     product->data    = atb;
14376718818eSStefano Zampini     product->destroy = MatDestroy_SeqAIJ_MatTransMatMult;
14384222ddf1SHong Zhang     atb->At          = At;
14394222ddf1SHong Zhang 
14404222ddf1SHong Zhang     C->ops->mattransposemultnumeric = NULL; /* see MatProductNumeric_AtB_SeqAIJ_SeqAIJ */
14413ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
14424222ddf1SHong Zhang   }
14434222ddf1SHong Zhang 
14444222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat Product Algorithm is not supported");
1445bc011b1eSHong Zhang }
1446bc011b1eSHong Zhang 
1447d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C)
1448d71ae5a4SJacob Faibussowitsch {
14490fbc74f4SHong Zhang   Mat_SeqAIJ    *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c = (Mat_SeqAIJ *)C->data;
1450d0f46423SBarry Smith   PetscInt       am = A->rmap->n, anzi, *ai = a->i, *aj = a->j, *bi = b->i, *bj, bnzi, nextb;
1451d0f46423SBarry Smith   PetscInt       cm = C->rmap->n, *ci = c->i, *cj = c->j, crow, *cjj, i, j, k;
1452d13dce4bSSatish Balay   PetscLogDouble flops = 0.0;
1453aa1aec99SHong Zhang   MatScalar     *aa    = a->a, *ba, *ca, *caj;
1454bc011b1eSHong Zhang 
1455bc011b1eSHong Zhang   PetscFunctionBegin;
1456aa1aec99SHong Zhang   if (!c->a) {
14579566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(ci[cm] + 1, &ca));
14582205254eSKarl Rupp 
1459aa1aec99SHong Zhang     c->a      = ca;
1460aa1aec99SHong Zhang     c->free_a = PETSC_TRUE;
1461aa1aec99SHong Zhang   } else {
1462aa1aec99SHong Zhang     ca = c->a;
14639566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ca, ci[cm]));
1464aa1aec99SHong Zhang   }
1465bc011b1eSHong Zhang 
1466bc011b1eSHong Zhang   /* compute A^T*B using outer product (A^T)[:,i]*B[i,:] */
1467bc011b1eSHong Zhang   for (i = 0; i < am; i++) {
1468bc011b1eSHong Zhang     bj   = b->j + bi[i];
1469bc011b1eSHong Zhang     ba   = b->a + bi[i];
1470bc011b1eSHong Zhang     bnzi = bi[i + 1] - bi[i];
1471bc011b1eSHong Zhang     anzi = ai[i + 1] - ai[i];
1472bc011b1eSHong Zhang     for (j = 0; j < anzi; j++) {
1473bc011b1eSHong Zhang       nextb = 0;
14740fbc74f4SHong Zhang       crow  = *aj++;
1475bc011b1eSHong Zhang       cjj   = cj + ci[crow];
1476bc011b1eSHong Zhang       caj   = ca + ci[crow];
1477bc011b1eSHong Zhang       /* perform sparse axpy operation.  Note cjj includes bj. */
1478bc011b1eSHong Zhang       for (k = 0; nextb < bnzi; k++) {
14790fbc74f4SHong Zhang         if (cjj[k] == *(bj + nextb)) { /* ccol == bcol */
14800fbc74f4SHong Zhang           caj[k] += (*aa) * (*(ba + nextb));
1481bc011b1eSHong Zhang           nextb++;
1482bc011b1eSHong Zhang         }
1483bc011b1eSHong Zhang       }
1484bc011b1eSHong Zhang       flops += 2 * bnzi;
14850fbc74f4SHong Zhang       aa++;
1486bc011b1eSHong Zhang     }
1487bc011b1eSHong Zhang   }
1488bc011b1eSHong Zhang 
1489bc011b1eSHong Zhang   /* Assemble the final matrix and clean up */
14909566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY));
14919566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY));
14929566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
14933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1494bc011b1eSHong Zhang }
14959123193aSHong Zhang 
1496d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqDense(Mat A, Mat B, PetscReal fill, Mat C)
1497d71ae5a4SJacob Faibussowitsch {
14989123193aSHong Zhang   PetscFunctionBegin;
14999566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqDense_SeqDense(A, B, 0.0, C));
15004222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqDense;
15013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15029123193aSHong Zhang }
15039123193aSHong Zhang 
1504d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat A, Mat B, Mat C, const PetscBool add)
1505d71ae5a4SJacob Faibussowitsch {
1506f32d5d43SBarry Smith   Mat_SeqAIJ        *a = (Mat_SeqAIJ *)A->data;
15071ca9667aSStefano Zampini   PetscScalar       *c, r1, r2, r3, r4, *c1, *c2, *c3, *c4;
1508a4af7ca8SStefano Zampini   const PetscScalar *aa, *b, *b1, *b2, *b3, *b4, *av;
1509daf57211SHong Zhang   const PetscInt    *aj;
151075f6d85dSStefano Zampini   PetscInt           cm = C->rmap->n, cn = B->cmap->n, bm, am = A->rmap->n;
151175f6d85dSStefano Zampini   PetscInt           clda;
151275f6d85dSStefano Zampini   PetscInt           am4, bm4, col, i, j, n;
15139123193aSHong Zhang 
15149123193aSHong Zhang   PetscFunctionBegin;
15153ba16761SJacob Faibussowitsch   if (!cm || !cn) PetscFunctionReturn(PETSC_SUCCESS);
15169566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A, &av));
151793aa15f2SStefano Zampini   if (add) {
15189566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArray(C, &c));
151993aa15f2SStefano Zampini   } else {
15209566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayWrite(C, &c));
152193aa15f2SStefano Zampini   }
15229566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B, &b));
15239566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B, &bm));
15249566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(C, &clda));
152575f6d85dSStefano Zampini   am4 = 4 * clda;
152675f6d85dSStefano Zampini   bm4 = 4 * bm;
15279371c9d4SSatish Balay   b1  = b;
15289371c9d4SSatish Balay   b2  = b1 + bm;
15299371c9d4SSatish Balay   b3  = b2 + bm;
15309371c9d4SSatish Balay   b4  = b3 + bm;
15319371c9d4SSatish Balay   c1  = c;
15329371c9d4SSatish Balay   c2  = c1 + clda;
15339371c9d4SSatish Balay   c3  = c2 + clda;
15349371c9d4SSatish Balay   c4  = c3 + clda;
15351ca9667aSStefano Zampini   for (col = 0; col < (cn / 4) * 4; col += 4) { /* over columns of C */
15361ca9667aSStefano Zampini     for (i = 0; i < am; i++) {                  /* over rows of A in those columns */
1537f32d5d43SBarry Smith       r1 = r2 = r3 = r4 = 0.0;
1538f32d5d43SBarry Smith       n                 = a->i[i + 1] - a->i[i];
1539f32d5d43SBarry Smith       aj                = a->j + a->i[i];
1540a4af7ca8SStefano Zampini       aa                = av + a->i[i];
1541f32d5d43SBarry Smith       for (j = 0; j < n; j++) {
15421ca9667aSStefano Zampini         const PetscScalar aatmp = aa[j];
15431ca9667aSStefano Zampini         const PetscInt    ajtmp = aj[j];
1544730858b9SHong Zhang         r1 += aatmp * b1[ajtmp];
1545730858b9SHong Zhang         r2 += aatmp * b2[ajtmp];
1546730858b9SHong Zhang         r3 += aatmp * b3[ajtmp];
1547730858b9SHong Zhang         r4 += aatmp * b4[ajtmp];
15489123193aSHong Zhang       }
154993aa15f2SStefano Zampini       if (add) {
155087753ddeSHong Zhang         c1[i] += r1;
155187753ddeSHong Zhang         c2[i] += r2;
155287753ddeSHong Zhang         c3[i] += r3;
155387753ddeSHong Zhang         c4[i] += r4;
155493aa15f2SStefano Zampini       } else {
155593aa15f2SStefano Zampini         c1[i] = r1;
155693aa15f2SStefano Zampini         c2[i] = r2;
155793aa15f2SStefano Zampini         c3[i] = r3;
155893aa15f2SStefano Zampini         c4[i] = r4;
155993aa15f2SStefano Zampini       }
1560f32d5d43SBarry Smith     }
15619371c9d4SSatish Balay     b1 += bm4;
15629371c9d4SSatish Balay     b2 += bm4;
15639371c9d4SSatish Balay     b3 += bm4;
15649371c9d4SSatish Balay     b4 += bm4;
15659371c9d4SSatish Balay     c1 += am4;
15669371c9d4SSatish Balay     c2 += am4;
15679371c9d4SSatish Balay     c3 += am4;
15689371c9d4SSatish Balay     c4 += am4;
1569f32d5d43SBarry Smith   }
157093aa15f2SStefano Zampini   /* process remaining columns */
157193aa15f2SStefano Zampini   if (col != cn) {
157293aa15f2SStefano Zampini     PetscInt rc = cn - col;
157393aa15f2SStefano Zampini 
157493aa15f2SStefano Zampini     if (rc == 1) {
157593aa15f2SStefano Zampini       for (i = 0; i < am; i++) {
1576f32d5d43SBarry Smith         r1 = 0.0;
1577f32d5d43SBarry Smith         n  = a->i[i + 1] - a->i[i];
1578f32d5d43SBarry Smith         aj = a->j + a->i[i];
1579a4af7ca8SStefano Zampini         aa = av + a->i[i];
158093aa15f2SStefano Zampini         for (j = 0; j < n; j++) r1 += aa[j] * b1[aj[j]];
158193aa15f2SStefano Zampini         if (add) c1[i] += r1;
158293aa15f2SStefano Zampini         else c1[i] = r1;
158393aa15f2SStefano Zampini       }
158493aa15f2SStefano Zampini     } else if (rc == 2) {
158593aa15f2SStefano Zampini       for (i = 0; i < am; i++) {
158693aa15f2SStefano Zampini         r1 = r2 = 0.0;
158793aa15f2SStefano Zampini         n       = a->i[i + 1] - a->i[i];
158893aa15f2SStefano Zampini         aj      = a->j + a->i[i];
158993aa15f2SStefano Zampini         aa      = av + a->i[i];
1590f32d5d43SBarry Smith         for (j = 0; j < n; j++) {
159193aa15f2SStefano Zampini           const PetscScalar aatmp = aa[j];
159293aa15f2SStefano Zampini           const PetscInt    ajtmp = aj[j];
159393aa15f2SStefano Zampini           r1 += aatmp * b1[ajtmp];
159493aa15f2SStefano Zampini           r2 += aatmp * b2[ajtmp];
1595f32d5d43SBarry Smith         }
159693aa15f2SStefano Zampini         if (add) {
159787753ddeSHong Zhang           c1[i] += r1;
159893aa15f2SStefano Zampini           c2[i] += r2;
159993aa15f2SStefano Zampini         } else {
160093aa15f2SStefano Zampini           c1[i] = r1;
160193aa15f2SStefano Zampini           c2[i] = r2;
1602f32d5d43SBarry Smith         }
160393aa15f2SStefano Zampini       }
160493aa15f2SStefano Zampini     } else {
160593aa15f2SStefano Zampini       for (i = 0; i < am; i++) {
160693aa15f2SStefano Zampini         r1 = r2 = r3 = 0.0;
160793aa15f2SStefano Zampini         n            = a->i[i + 1] - a->i[i];
160893aa15f2SStefano Zampini         aj           = a->j + a->i[i];
160993aa15f2SStefano Zampini         aa           = av + a->i[i];
161093aa15f2SStefano Zampini         for (j = 0; j < n; j++) {
161193aa15f2SStefano Zampini           const PetscScalar aatmp = aa[j];
161293aa15f2SStefano Zampini           const PetscInt    ajtmp = aj[j];
161393aa15f2SStefano Zampini           r1 += aatmp * b1[ajtmp];
161493aa15f2SStefano Zampini           r2 += aatmp * b2[ajtmp];
161593aa15f2SStefano Zampini           r3 += aatmp * b3[ajtmp];
161693aa15f2SStefano Zampini         }
161793aa15f2SStefano Zampini         if (add) {
161893aa15f2SStefano Zampini           c1[i] += r1;
161993aa15f2SStefano Zampini           c2[i] += r2;
162093aa15f2SStefano Zampini           c3[i] += r3;
162193aa15f2SStefano Zampini         } else {
162293aa15f2SStefano Zampini           c1[i] = r1;
162393aa15f2SStefano Zampini           c2[i] = r2;
162493aa15f2SStefano Zampini           c3[i] = r3;
162593aa15f2SStefano Zampini         }
162693aa15f2SStefano Zampini       }
162793aa15f2SStefano Zampini     }
1628f32d5d43SBarry Smith   }
16299566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(cn * (2.0 * a->nz)));
163093aa15f2SStefano Zampini   if (add) {
16319566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(C, &c));
163293aa15f2SStefano Zampini   } else {
16339566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayWrite(C, &c));
163493aa15f2SStefano Zampini   }
16359566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B, &b));
16369566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A, &av));
16373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1638f32d5d43SBarry Smith }
1639f32d5d43SBarry Smith 
1640d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqDense(Mat A, Mat B, Mat C)
1641d71ae5a4SJacob Faibussowitsch {
1642f32d5d43SBarry Smith   PetscFunctionBegin;
164308401ef6SPierre Jolivet   PetscCheck(B->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number columns in A %" PetscInt_FMT " not equal rows in B %" PetscInt_FMT, A->cmap->n, B->rmap->n);
164408401ef6SPierre Jolivet   PetscCheck(A->rmap->n == C->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number rows in C %" PetscInt_FMT " not equal rows in A %" PetscInt_FMT, C->rmap->n, A->rmap->n);
164508401ef6SPierre Jolivet   PetscCheck(B->cmap->n == C->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number columns in B %" PetscInt_FMT " not equal columns in C %" PetscInt_FMT, B->cmap->n, C->cmap->n);
16464324174eSBarry Smith 
16479566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(A, B, C, PETSC_FALSE));
16483ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16499123193aSHong Zhang }
1650b1683b59SHong Zhang 
1651d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AB(Mat C)
1652d71ae5a4SJacob Faibussowitsch {
16534222ddf1SHong Zhang   PetscFunctionBegin;
16544222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqDense;
16554222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
16563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16574222ddf1SHong Zhang }
16584222ddf1SHong Zhang 
16596718818eSStefano Zampini PETSC_INTERN PetscErrorCode MatTMatTMultSymbolic_SeqAIJ_SeqDense(Mat, Mat, PetscReal, Mat);
16606718818eSStefano Zampini 
1661d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(Mat C)
1662d71ae5a4SJacob Faibussowitsch {
16634222ddf1SHong Zhang   PetscFunctionBegin;
16646718818eSStefano Zampini   C->ops->transposematmultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense;
16654222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
16663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16676718818eSStefano Zampini }
16686718818eSStefano Zampini 
1669d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(Mat C)
1670d71ae5a4SJacob Faibussowitsch {
16716718818eSStefano Zampini   PetscFunctionBegin;
16726718818eSStefano Zampini   C->ops->mattransposemultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense;
16736718818eSStefano Zampini   C->ops->productsymbolic          = MatProductSymbolic_ABt;
16743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16754222ddf1SHong Zhang }
16764222ddf1SHong Zhang 
1677d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense(Mat C)
1678d71ae5a4SJacob Faibussowitsch {
16794222ddf1SHong Zhang   Mat_Product *product = C->product;
16804222ddf1SHong Zhang 
16814222ddf1SHong Zhang   PetscFunctionBegin;
16824222ddf1SHong Zhang   switch (product->type) {
1683d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
1684d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AB(C));
1685d71ae5a4SJacob Faibussowitsch     break;
1686d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
1687d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(C));
1688d71ae5a4SJacob Faibussowitsch     break;
1689d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
1690d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(C));
1691d71ae5a4SJacob Faibussowitsch     break;
1692d71ae5a4SJacob Faibussowitsch   default:
1693d71ae5a4SJacob Faibussowitsch     break;
16944222ddf1SHong Zhang   }
16953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16964222ddf1SHong Zhang }
1697*2ef1f0ffSBarry Smith 
1698d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(Mat C)
1699d71ae5a4SJacob Faibussowitsch {
17004222ddf1SHong Zhang   Mat_Product *product = C->product;
17014222ddf1SHong Zhang   Mat          A       = product->A;
17024222ddf1SHong Zhang   PetscBool    baij;
17034222ddf1SHong Zhang 
17044222ddf1SHong Zhang   PetscFunctionBegin;
17059566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQBAIJ, &baij));
17064222ddf1SHong Zhang   if (!baij) { /* A is seqsbaij */
17074222ddf1SHong Zhang     PetscBool sbaij;
17089566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQSBAIJ, &sbaij));
170928b400f6SJacob Faibussowitsch     PetscCheck(sbaij, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "Mat must be either seqbaij or seqsbaij format");
17104222ddf1SHong Zhang 
17114222ddf1SHong Zhang     C->ops->matmultsymbolic = MatMatMultSymbolic_SeqSBAIJ_SeqDense;
17124222ddf1SHong Zhang   } else { /* A is seqbaij */
17134222ddf1SHong Zhang     C->ops->matmultsymbolic = MatMatMultSymbolic_SeqBAIJ_SeqDense;
17144222ddf1SHong Zhang   }
17154222ddf1SHong Zhang 
17164222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
17173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17184222ddf1SHong Zhang }
17194222ddf1SHong Zhang 
1720d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense(Mat C)
1721d71ae5a4SJacob Faibussowitsch {
17224222ddf1SHong Zhang   Mat_Product *product = C->product;
17234222ddf1SHong Zhang 
17244222ddf1SHong Zhang   PetscFunctionBegin;
17256718818eSStefano Zampini   MatCheckProduct(C, 1);
172628b400f6SJacob Faibussowitsch   PetscCheck(product->A, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing A");
1727b94d7dedSBarry Smith   if (product->type == MATPRODUCT_AB || (product->type == MATPRODUCT_AtB && product->A->symmetric == PETSC_BOOL3_TRUE)) PetscCall(MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(C));
17283ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17294222ddf1SHong Zhang }
17306718818eSStefano Zampini 
1731d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ_AB(Mat C)
1732d71ae5a4SJacob Faibussowitsch {
17334222ddf1SHong Zhang   PetscFunctionBegin;
17344222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqAIJ;
17354222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
17363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17374222ddf1SHong Zhang }
17384222ddf1SHong Zhang 
1739d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ(Mat C)
1740d71ae5a4SJacob Faibussowitsch {
17414222ddf1SHong Zhang   Mat_Product *product = C->product;
17424222ddf1SHong Zhang 
17434222ddf1SHong Zhang   PetscFunctionBegin;
174448a46eb9SPierre Jolivet   if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_SeqDense_SeqAIJ_AB(C));
17453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17464222ddf1SHong Zhang }
17474222ddf1SHong Zhang 
1748d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransColoringApplySpToDen_SeqAIJ(MatTransposeColoring coloring, Mat B, Mat Btdense)
1749d71ae5a4SJacob Faibussowitsch {
17502f5f1f90SHong Zhang   Mat_SeqAIJ   *b       = (Mat_SeqAIJ *)B->data;
17512f5f1f90SHong Zhang   Mat_SeqDense *btdense = (Mat_SeqDense *)Btdense->data;
17522f5f1f90SHong Zhang   PetscInt     *bi = b->i, *bj = b->j;
17532f5f1f90SHong Zhang   PetscInt      m = Btdense->rmap->n, n = Btdense->cmap->n, j, k, l, col, anz, *btcol, brow, ncolumns;
17542f5f1f90SHong Zhang   MatScalar    *btval, *btval_den, *ba = b->a;
17552f5f1f90SHong Zhang   PetscInt     *columns = coloring->columns, *colorforcol = coloring->colorforcol, ncolors = coloring->ncolors;
1756c8db22f6SHong Zhang 
1757c8db22f6SHong Zhang   PetscFunctionBegin;
17582f5f1f90SHong Zhang   btval_den = btdense->v;
17599566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(btval_den, m * n));
17602f5f1f90SHong Zhang   for (k = 0; k < ncolors; k++) {
17612f5f1f90SHong Zhang     ncolumns = coloring->ncolumns[k];
17622f5f1f90SHong Zhang     for (l = 0; l < ncolumns; l++) { /* insert a row of B to a column of Btdense */
1763d2853540SHong Zhang       col   = *(columns + colorforcol[k] + l);
17642f5f1f90SHong Zhang       btcol = bj + bi[col];
17652f5f1f90SHong Zhang       btval = ba + bi[col];
17662f5f1f90SHong Zhang       anz   = bi[col + 1] - bi[col];
1767d2853540SHong Zhang       for (j = 0; j < anz; j++) {
17682f5f1f90SHong Zhang         brow            = btcol[j];
17692f5f1f90SHong Zhang         btval_den[brow] = btval[j];
1770c8db22f6SHong Zhang       }
1771c8db22f6SHong Zhang     }
17722f5f1f90SHong Zhang     btval_den += m;
1773c8db22f6SHong Zhang   }
17743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1775c8db22f6SHong Zhang }
1776c8db22f6SHong Zhang 
1777d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransColoringApplyDenToSp_SeqAIJ(MatTransposeColoring matcoloring, Mat Cden, Mat Csp)
1778d71ae5a4SJacob Faibussowitsch {
1779b2d2b04fSHong Zhang   Mat_SeqAIJ        *csp = (Mat_SeqAIJ *)Csp->data;
17801683a169SBarry Smith   const PetscScalar *ca_den, *ca_den_ptr;
17811683a169SBarry Smith   PetscScalar       *ca = csp->a;
1782f99a636bSHong Zhang   PetscInt           k, l, m = Cden->rmap->n, ncolors = matcoloring->ncolors;
1783e88777f2SHong Zhang   PetscInt           brows = matcoloring->brows, *den2sp = matcoloring->den2sp;
1784077f23c2SHong Zhang   PetscInt           nrows, *row, *idx;
1785077f23c2SHong Zhang   PetscInt          *rows = matcoloring->rows, *colorforrow = matcoloring->colorforrow;
17868972f759SHong Zhang 
17878972f759SHong Zhang   PetscFunctionBegin;
17889566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(Cden, &ca_den));
1789f99a636bSHong Zhang 
1790077f23c2SHong Zhang   if (brows > 0) {
1791077f23c2SHong Zhang     PetscInt *lstart, row_end, row_start;
1792980ae229SHong Zhang     lstart = matcoloring->lstart;
17939566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(lstart, ncolors));
1794eeb4fd02SHong Zhang 
1795077f23c2SHong Zhang     row_end = brows;
1796eeb4fd02SHong Zhang     if (row_end > m) row_end = m;
1797077f23c2SHong Zhang     for (row_start = 0; row_start < m; row_start += brows) { /* loop over row blocks of Csp */
1798077f23c2SHong Zhang       ca_den_ptr = ca_den;
1799980ae229SHong Zhang       for (k = 0; k < ncolors; k++) { /* loop over colors (columns of Cden) */
1800eeb4fd02SHong Zhang         nrows = matcoloring->nrows[k];
1801eeb4fd02SHong Zhang         row   = rows + colorforrow[k];
1802eeb4fd02SHong Zhang         idx   = den2sp + colorforrow[k];
1803eeb4fd02SHong Zhang         for (l = lstart[k]; l < nrows; l++) {
1804eeb4fd02SHong Zhang           if (row[l] >= row_end) {
1805eeb4fd02SHong Zhang             lstart[k] = l;
1806eeb4fd02SHong Zhang             break;
1807eeb4fd02SHong Zhang           } else {
1808077f23c2SHong Zhang             ca[idx[l]] = ca_den_ptr[row[l]];
1809eeb4fd02SHong Zhang           }
1810eeb4fd02SHong Zhang         }
1811077f23c2SHong Zhang         ca_den_ptr += m;
1812eeb4fd02SHong Zhang       }
1813077f23c2SHong Zhang       row_end += brows;
1814eeb4fd02SHong Zhang       if (row_end > m) row_end = m;
1815eeb4fd02SHong Zhang     }
1816077f23c2SHong Zhang   } else { /* non-blocked impl: loop over columns of Csp - slow if Csp is large */
1817077f23c2SHong Zhang     ca_den_ptr = ca_den;
1818077f23c2SHong Zhang     for (k = 0; k < ncolors; k++) {
1819077f23c2SHong Zhang       nrows = matcoloring->nrows[k];
1820077f23c2SHong Zhang       row   = rows + colorforrow[k];
1821077f23c2SHong Zhang       idx   = den2sp + colorforrow[k];
1822ad540459SPierre Jolivet       for (l = 0; l < nrows; l++) ca[idx[l]] = ca_den_ptr[row[l]];
1823077f23c2SHong Zhang       ca_den_ptr += m;
1824077f23c2SHong Zhang     }
1825f99a636bSHong Zhang   }
1826f99a636bSHong Zhang 
18279566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(Cden, &ca_den));
1828f99a636bSHong Zhang #if defined(PETSC_USE_INFO)
1829077f23c2SHong Zhang   if (matcoloring->brows > 0) {
18309566063dSJacob Faibussowitsch     PetscCall(PetscInfo(Csp, "Loop over %" PetscInt_FMT " row blocks for den2sp\n", brows));
1831e88777f2SHong Zhang   } else {
18329566063dSJacob Faibussowitsch     PetscCall(PetscInfo(Csp, "Loop over colors/columns of Cden, inefficient for large sparse matrix product \n"));
1833e88777f2SHong Zhang   }
1834f99a636bSHong Zhang #endif
18353ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18368972f759SHong Zhang }
18378972f759SHong Zhang 
1838d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeColoringCreate_SeqAIJ(Mat mat, ISColoring iscoloring, MatTransposeColoring c)
1839d71ae5a4SJacob Faibussowitsch {
1840e88777f2SHong Zhang   PetscInt        i, n, nrows, Nbs, j, k, m, ncols, col, cm;
18411a83f524SJed Brown   const PetscInt *is, *ci, *cj, *row_idx;
1842b28d80bdSHong Zhang   PetscInt        nis = iscoloring->n, *rowhit, bs = 1;
1843b1683b59SHong Zhang   IS             *isa;
1844b28d80bdSHong Zhang   Mat_SeqAIJ     *csp = (Mat_SeqAIJ *)mat->data;
1845e88777f2SHong Zhang   PetscInt       *colorforrow, *rows, *rows_i, *idxhit, *spidx, *den2sp, *den2sp_i;
1846e88777f2SHong Zhang   PetscInt       *colorforcol, *columns, *columns_i, brows;
1847e88777f2SHong Zhang   PetscBool       flg;
1848b1683b59SHong Zhang 
1849b1683b59SHong Zhang   PetscFunctionBegin;
18509566063dSJacob Faibussowitsch   PetscCall(ISColoringGetIS(iscoloring, PETSC_USE_POINTER, PETSC_IGNORE, &isa));
1851e99be685SHong Zhang 
18527ecccc15SHong Zhang   /* bs >1 is not being tested yet! */
1853e88777f2SHong Zhang   Nbs       = mat->cmap->N / bs;
1854b1683b59SHong Zhang   c->M      = mat->rmap->N / bs; /* set total rows, columns and local rows */
1855e88777f2SHong Zhang   c->N      = Nbs;
1856e88777f2SHong Zhang   c->m      = c->M;
1857b1683b59SHong Zhang   c->rstart = 0;
1858e88777f2SHong Zhang   c->brows  = 100;
1859b1683b59SHong Zhang 
1860b1683b59SHong Zhang   c->ncolors = nis;
18619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nis, &c->ncolumns, nis, &c->nrows, nis + 1, &colorforrow));
18629566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(csp->nz + 1, &rows));
18639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(csp->nz + 1, &den2sp));
1864e88777f2SHong Zhang 
1865e88777f2SHong Zhang   brows = c->brows;
18669566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL, NULL, "-matden2sp_brows", &brows, &flg));
1867e88777f2SHong Zhang   if (flg) c->brows = brows;
186848a46eb9SPierre Jolivet   if (brows > 0) PetscCall(PetscMalloc1(nis + 1, &c->lstart));
18692205254eSKarl Rupp 
1870d2853540SHong Zhang   colorforrow[0] = 0;
1871d2853540SHong Zhang   rows_i         = rows;
1872f99a636bSHong Zhang   den2sp_i       = den2sp;
1873b1683b59SHong Zhang 
18749566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nis + 1, &colorforcol));
18759566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nbs + 1, &columns));
18762205254eSKarl Rupp 
1877d2853540SHong Zhang   colorforcol[0] = 0;
1878d2853540SHong Zhang   columns_i      = columns;
1879d2853540SHong Zhang 
1880077f23c2SHong Zhang   /* get column-wise storage of mat */
18819566063dSJacob Faibussowitsch   PetscCall(MatGetColumnIJ_SeqAIJ_Color(mat, 0, PETSC_FALSE, PETSC_FALSE, &ncols, &ci, &cj, &spidx, NULL));
1882b1683b59SHong Zhang 
1883b28d80bdSHong Zhang   cm = c->m;
18849566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cm + 1, &rowhit));
18859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cm + 1, &idxhit));
1886f99a636bSHong Zhang   for (i = 0; i < nis; i++) { /* loop over color */
18879566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isa[i], &n));
18889566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(isa[i], &is));
18892205254eSKarl Rupp 
1890b1683b59SHong Zhang     c->ncolumns[i] = n;
18911baa6e33SBarry Smith     if (n) PetscCall(PetscArraycpy(columns_i, is, n));
1892d2853540SHong Zhang     colorforcol[i + 1] = colorforcol[i] + n;
1893d2853540SHong Zhang     columns_i += n;
1894b1683b59SHong Zhang 
1895b1683b59SHong Zhang     /* fast, crude version requires O(N*N) work */
18969566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(rowhit, cm));
1897e99be685SHong Zhang 
1898b7caf3d6SHong Zhang     for (j = 0; j < n; j++) { /* loop over columns*/
1899b1683b59SHong Zhang       col     = is[j];
1900d2853540SHong Zhang       row_idx = cj + ci[col];
1901b1683b59SHong Zhang       m       = ci[col + 1] - ci[col];
1902b7caf3d6SHong Zhang       for (k = 0; k < m; k++) { /* loop over columns marking them in rowhit */
1903e99be685SHong Zhang         idxhit[*row_idx]   = spidx[ci[col] + k];
1904d2853540SHong Zhang         rowhit[*row_idx++] = col + 1;
1905b1683b59SHong Zhang       }
1906b1683b59SHong Zhang     }
1907b1683b59SHong Zhang     /* count the number of hits */
1908b1683b59SHong Zhang     nrows = 0;
1909e8354b3eSHong Zhang     for (j = 0; j < cm; j++) {
1910b1683b59SHong Zhang       if (rowhit[j]) nrows++;
1911b1683b59SHong Zhang     }
1912b1683b59SHong Zhang     c->nrows[i]        = nrows;
1913d2853540SHong Zhang     colorforrow[i + 1] = colorforrow[i] + nrows;
1914d2853540SHong Zhang 
1915b1683b59SHong Zhang     nrows = 0;
1916b7caf3d6SHong Zhang     for (j = 0; j < cm; j++) { /* loop over rows */
1917b1683b59SHong Zhang       if (rowhit[j]) {
1918d2853540SHong Zhang         rows_i[nrows]   = j;
191912b89a43SHong Zhang         den2sp_i[nrows] = idxhit[j];
1920b1683b59SHong Zhang         nrows++;
1921b1683b59SHong Zhang       }
1922b1683b59SHong Zhang     }
1923e88777f2SHong Zhang     den2sp_i += nrows;
1924077f23c2SHong Zhang 
19259566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(isa[i], &is));
1926f99a636bSHong Zhang     rows_i += nrows;
1927b1683b59SHong Zhang   }
19289566063dSJacob Faibussowitsch   PetscCall(MatRestoreColumnIJ_SeqAIJ_Color(mat, 0, PETSC_FALSE, PETSC_FALSE, &ncols, &ci, &cj, &spidx, NULL));
19299566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowhit));
19309566063dSJacob Faibussowitsch   PetscCall(ISColoringRestoreIS(iscoloring, PETSC_USE_POINTER, &isa));
19312c71b3e2SJacob Faibussowitsch   PetscCheck(csp->nz == colorforrow[nis], PETSC_COMM_SELF, PETSC_ERR_PLIB, "csp->nz %" PetscInt_FMT " != colorforrow[nis] %" PetscInt_FMT, csp->nz, colorforrow[nis]);
1932b28d80bdSHong Zhang 
1933d2853540SHong Zhang   c->colorforrow = colorforrow;
1934d2853540SHong Zhang   c->rows        = rows;
1935f99a636bSHong Zhang   c->den2sp      = den2sp;
1936d2853540SHong Zhang   c->colorforcol = colorforcol;
1937d2853540SHong Zhang   c->columns     = columns;
19382205254eSKarl Rupp 
19399566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxhit));
19403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1941b1683b59SHong Zhang }
1942d013fc79Sandi selinger 
1943d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_AtB_SeqAIJ_SeqAIJ(Mat C)
1944d71ae5a4SJacob Faibussowitsch {
19454222ddf1SHong Zhang   Mat_Product *product = C->product;
19464222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
19474222ddf1SHong Zhang 
1948df97dc6dSFande Kong   PetscFunctionBegin;
19494222ddf1SHong Zhang   if (C->ops->mattransposemultnumeric) {
19504222ddf1SHong Zhang     /* Alg: "outerproduct" */
19519566063dSJacob Faibussowitsch     PetscCall((*C->ops->mattransposemultnumeric)(A, B, C));
19524222ddf1SHong Zhang   } else {
19534222ddf1SHong Zhang     /* Alg: "matmatmult" -- C = At*B */
19546718818eSStefano Zampini     Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)product->data;
19554222ddf1SHong Zhang 
195628b400f6SJacob Faibussowitsch     PetscCheck(atb, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct");
19571cdffd5eSHong Zhang     if (atb->At) {
19581cdffd5eSHong Zhang       /* At is computed in MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ();
19591cdffd5eSHong Zhang          user may have called MatProductReplaceMats() to get this A=product->A */
19601cdffd5eSHong Zhang       PetscCall(MatTransposeSetPrecursor(A, atb->At));
19617fb60732SBarry Smith       PetscCall(MatTranspose(A, MAT_REUSE_MATRIX, &atb->At));
19624222ddf1SHong Zhang     }
19637fb60732SBarry Smith     PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ(atb->At ? atb->At : A, B, C));
19644222ddf1SHong Zhang   }
19653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1966df97dc6dSFande Kong }
1967df97dc6dSFande Kong 
1968d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_SeqAIJ_SeqAIJ(Mat C)
1969d71ae5a4SJacob Faibussowitsch {
19704222ddf1SHong Zhang   Mat_Product *product = C->product;
19714222ddf1SHong Zhang   Mat          A = product->A, B = product->B;
19724222ddf1SHong Zhang   PetscReal    fill = product->fill;
1973d013fc79Sandi selinger 
1974d013fc79Sandi selinger   PetscFunctionBegin;
19759566063dSJacob Faibussowitsch   PetscCall(MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(A, B, fill, C));
19762869b61bSandi selinger 
19774222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB_SeqAIJ_SeqAIJ;
19783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19792869b61bSandi selinger }
1980d013fc79Sandi selinger 
1981d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AB(Mat C)
1982d71ae5a4SJacob Faibussowitsch {
19834222ddf1SHong Zhang   Mat_Product *product = C->product;
19844222ddf1SHong Zhang   PetscInt     alg     = 0; /* default algorithm */
19854222ddf1SHong Zhang   PetscBool    flg     = PETSC_FALSE;
19864222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
19874222ddf1SHong Zhang   const char *algTypes[7] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge"};
19884222ddf1SHong Zhang   PetscInt    nalg        = 7;
19894222ddf1SHong Zhang #else
19904222ddf1SHong Zhang   const char *algTypes[8] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge", "hypre"};
19914222ddf1SHong Zhang   PetscInt    nalg        = 8;
19924222ddf1SHong Zhang #endif
19934222ddf1SHong Zhang 
19944222ddf1SHong Zhang   PetscFunctionBegin;
19954222ddf1SHong Zhang   /* Set default algorithm */
19969566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
199748a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
1998d013fc79Sandi selinger 
19994222ddf1SHong Zhang   /* Get runtime option */
20004222ddf1SHong Zhang   if (product->api_user) {
2001d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat");
20029566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[0], &alg, &flg));
2003d0609cedSBarry Smith     PetscOptionsEnd();
20044222ddf1SHong Zhang   } else {
2005d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat");
20069566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AB", algTypes, nalg, algTypes[0], &alg, &flg));
2007d0609cedSBarry Smith     PetscOptionsEnd();
2008d013fc79Sandi selinger   }
200948a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
2010d013fc79Sandi selinger 
20114222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
20124222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqAIJ;
20133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20144222ddf1SHong Zhang }
2015d013fc79Sandi selinger 
2016d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AtB(Mat C)
2017d71ae5a4SJacob Faibussowitsch {
20184222ddf1SHong Zhang   Mat_Product *product     = C->product;
20194222ddf1SHong Zhang   PetscInt     alg         = 0; /* default algorithm */
20204222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
2021089a957eSStefano Zampini   const char  *algTypes[3] = {"default", "at*b", "outerproduct"};
2022089a957eSStefano Zampini   PetscInt     nalg        = 3;
2023d013fc79Sandi selinger 
20244222ddf1SHong Zhang   PetscFunctionBegin;
20254222ddf1SHong Zhang   /* Get runtime option */
20264222ddf1SHong Zhang   if (product->api_user) {
2027d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat");
20289566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2029d0609cedSBarry Smith     PetscOptionsEnd();
20304222ddf1SHong Zhang   } else {
2031d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat");
20329566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AtB", algTypes, nalg, algTypes[alg], &alg, &flg));
2033d0609cedSBarry Smith     PetscOptionsEnd();
20344222ddf1SHong Zhang   }
203548a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
2036d013fc79Sandi selinger 
20374222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_SeqAIJ_SeqAIJ;
20383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20394222ddf1SHong Zhang }
20404222ddf1SHong Zhang 
2041d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABt(Mat C)
2042d71ae5a4SJacob Faibussowitsch {
20434222ddf1SHong Zhang   Mat_Product *product     = C->product;
20444222ddf1SHong Zhang   PetscInt     alg         = 0; /* default algorithm */
20454222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
20464222ddf1SHong Zhang   const char  *algTypes[2] = {"default", "color"};
20474222ddf1SHong Zhang   PetscInt     nalg        = 2;
20484222ddf1SHong Zhang 
20494222ddf1SHong Zhang   PetscFunctionBegin;
20504222ddf1SHong Zhang   /* Set default algorithm */
20519566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg, "default", &flg));
20524222ddf1SHong Zhang   if (!flg) {
20534222ddf1SHong Zhang     alg = 1;
20549566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
20554222ddf1SHong Zhang   }
20564222ddf1SHong Zhang 
20574222ddf1SHong Zhang   /* Get runtime option */
20584222ddf1SHong Zhang   if (product->api_user) {
2059d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat");
20609566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmattransmult_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2061d0609cedSBarry Smith     PetscOptionsEnd();
20624222ddf1SHong Zhang   } else {
2063d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat");
20649566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg));
2065d0609cedSBarry Smith     PetscOptionsEnd();
20664222ddf1SHong Zhang   }
206748a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
20684222ddf1SHong Zhang 
20694222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ;
20704222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
20713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20724222ddf1SHong Zhang }
20734222ddf1SHong Zhang 
2074d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_PtAP(Mat C)
2075d71ae5a4SJacob Faibussowitsch {
20764222ddf1SHong Zhang   Mat_Product *product = C->product;
20774222ddf1SHong Zhang   PetscBool    flg     = PETSC_FALSE;
20784222ddf1SHong Zhang   PetscInt     alg     = 0; /* default algorithm -- alg=1 should be default!!! */
20794222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
20804222ddf1SHong Zhang   const char *algTypes[2] = {"scalable", "rap"};
20814222ddf1SHong Zhang   PetscInt    nalg        = 2;
20824222ddf1SHong Zhang #else
20834222ddf1SHong Zhang   const char *algTypes[3] = {"scalable", "rap", "hypre"};
20844222ddf1SHong Zhang   PetscInt    nalg        = 3;
20854222ddf1SHong Zhang #endif
20864222ddf1SHong Zhang 
20874222ddf1SHong Zhang   PetscFunctionBegin;
20884222ddf1SHong Zhang   /* Set default algorithm */
20899566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "default", &flg));
209048a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
20914222ddf1SHong Zhang 
20924222ddf1SHong Zhang   /* Get runtime option */
20934222ddf1SHong Zhang   if (product->api_user) {
2094d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat");
20959566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[0], &alg, &flg));
2096d0609cedSBarry Smith     PetscOptionsEnd();
20974222ddf1SHong Zhang   } else {
2098d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat");
20999566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_PtAP", algTypes, nalg, algTypes[0], &alg, &flg));
2100d0609cedSBarry Smith     PetscOptionsEnd();
21014222ddf1SHong Zhang   }
210248a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21034222ddf1SHong Zhang 
21044222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_SeqAIJ_SeqAIJ;
21053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21064222ddf1SHong Zhang }
21074222ddf1SHong Zhang 
2108d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_RARt(Mat C)
2109d71ae5a4SJacob Faibussowitsch {
21104222ddf1SHong Zhang   Mat_Product *product     = C->product;
21114222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
21124222ddf1SHong Zhang   PetscInt     alg         = 0; /* default algorithm */
21134222ddf1SHong Zhang   const char  *algTypes[3] = {"r*a*rt", "r*art", "coloring_rart"};
21144222ddf1SHong Zhang   PetscInt     nalg        = 3;
21154222ddf1SHong Zhang 
21164222ddf1SHong Zhang   PetscFunctionBegin;
21174222ddf1SHong Zhang   /* Set default algorithm */
21189566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "default", &flg));
211948a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21204222ddf1SHong Zhang 
21214222ddf1SHong Zhang   /* Get runtime option */
21224222ddf1SHong Zhang   if (product->api_user) {
2123d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatRARt", "Mat");
21249566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matrart_via", "Algorithmic approach", "MatRARt", algTypes, nalg, algTypes[0], &alg, &flg));
2125d0609cedSBarry Smith     PetscOptionsEnd();
21264222ddf1SHong Zhang   } else {
2127d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_RARt", "Mat");
21289566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_RARt", algTypes, nalg, algTypes[0], &alg, &flg));
2129d0609cedSBarry Smith     PetscOptionsEnd();
21304222ddf1SHong Zhang   }
213148a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21324222ddf1SHong Zhang 
21334222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_SeqAIJ_SeqAIJ;
21343ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21354222ddf1SHong Zhang }
21364222ddf1SHong Zhang 
21374222ddf1SHong Zhang /* ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm */
2138d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABC(Mat C)
2139d71ae5a4SJacob Faibussowitsch {
21404222ddf1SHong Zhang   Mat_Product *product     = C->product;
21414222ddf1SHong Zhang   PetscInt     alg         = 0; /* default algorithm */
21424222ddf1SHong Zhang   PetscBool    flg         = PETSC_FALSE;
21434222ddf1SHong Zhang   const char  *algTypes[7] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge"};
21444222ddf1SHong Zhang   PetscInt     nalg        = 7;
21454222ddf1SHong Zhang 
21464222ddf1SHong Zhang   PetscFunctionBegin;
21474222ddf1SHong Zhang   /* Set default algorithm */
21489566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg, "default", &flg));
214948a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21504222ddf1SHong Zhang 
21514222ddf1SHong Zhang   /* Get runtime option */
21524222ddf1SHong Zhang   if (product->api_user) {
2153d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat");
21549566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg));
2155d0609cedSBarry Smith     PetscOptionsEnd();
21564222ddf1SHong Zhang   } else {
2157d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat");
21589566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg));
2159d0609cedSBarry Smith     PetscOptionsEnd();
21604222ddf1SHong Zhang   }
216148a46eb9SPierre Jolivet   if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg]));
21624222ddf1SHong Zhang 
21634222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_SeqAIJ_SeqAIJ_SeqAIJ;
21644222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
21653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21664222ddf1SHong Zhang }
21674222ddf1SHong Zhang 
2168d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_SeqAIJ(Mat C)
2169d71ae5a4SJacob Faibussowitsch {
21704222ddf1SHong Zhang   Mat_Product *product = C->product;
21714222ddf1SHong Zhang 
21724222ddf1SHong Zhang   PetscFunctionBegin;
21734222ddf1SHong Zhang   switch (product->type) {
2174d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AB:
2175d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_AB(C));
2176d71ae5a4SJacob Faibussowitsch     break;
2177d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_AtB:
2178d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_AtB(C));
2179d71ae5a4SJacob Faibussowitsch     break;
2180d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABt:
2181d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_ABt(C));
2182d71ae5a4SJacob Faibussowitsch     break;
2183d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_PtAP:
2184d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_PtAP(C));
2185d71ae5a4SJacob Faibussowitsch     break;
2186d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_RARt:
2187d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_RARt(C));
2188d71ae5a4SJacob Faibussowitsch     break;
2189d71ae5a4SJacob Faibussowitsch   case MATPRODUCT_ABC:
2190d71ae5a4SJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_ABC(C));
2191d71ae5a4SJacob Faibussowitsch     break;
2192d71ae5a4SJacob Faibussowitsch   default:
2193d71ae5a4SJacob Faibussowitsch     break;
21944222ddf1SHong Zhang   }
21953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2196d013fc79Sandi selinger }
2197