1d50806bdSBarry Smith /* 22499ec78SHong Zhang Defines matrix-matrix product routines for pairs of SeqAIJ matrices 3d50806bdSBarry Smith C = A * B 4d50806bdSBarry Smith */ 5d50806bdSBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 8c6db04a5SJed Brown #include <petscbt.h> 9af0996ceSBarry Smith #include <petsc/private/isimpl.h> 1007475bc1SBarry Smith #include <../src/mat/impls/dense/seq/dense.h> 117bab7c10SHong Zhang 12d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C) 13d71ae5a4SJacob Faibussowitsch { 14df97dc6dSFande Kong PetscFunctionBegin; 15dbbe0bcdSBarry Smith if (C->ops->matmultnumeric) PetscCall((*C->ops->matmultnumeric)(A, B, C)); 16dbbe0bcdSBarry Smith else PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(A, B, C)); 173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18df97dc6dSFande Kong } 19df97dc6dSFande Kong 204222ddf1SHong Zhang /* Modified from MatCreateSeqAIJWithArrays() */ 21d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSetSeqAIJWithArrays_private(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt i[], PetscInt j[], PetscScalar a[], MatType mtype, Mat mat) 22d71ae5a4SJacob Faibussowitsch { 234222ddf1SHong Zhang PetscInt ii; 244222ddf1SHong Zhang Mat_SeqAIJ *aij; 259f0612e4SBarry Smith PetscBool isseqaij, ofree_a, ofree_ij; 265c66b693SKris Buschelman 275c66b693SKris Buschelman PetscFunctionBegin; 28aed4548fSBarry Smith PetscCheck(m <= 0 || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, m, n, m, n)); 304222ddf1SHong Zhang 31e4e71118SStefano Zampini if (!mtype) { 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)mat, MATSEQAIJ, &isseqaij)); 339566063dSJacob Faibussowitsch if (!isseqaij) PetscCall(MatSetType(mat, MATSEQAIJ)); 34e4e71118SStefano Zampini } else { 359566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, mtype)); 36e4e71118SStefano Zampini } 37cbc6b225SStefano Zampini 3857508eceSPierre Jolivet aij = (Mat_SeqAIJ *)mat->data; 39cbc6b225SStefano Zampini ofree_a = aij->free_a; 40cbc6b225SStefano Zampini ofree_ij = aij->free_ij; 41cbc6b225SStefano Zampini /* changes the free flags */ 429566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(mat, MAT_SKIP_ALLOCATION, NULL)); 43cbc6b225SStefano Zampini 449566063dSJacob Faibussowitsch PetscCall(PetscFree(aij->ilen)); 459566063dSJacob Faibussowitsch PetscCall(PetscFree(aij->imax)); 469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &aij->imax)); 479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &aij->ilen)); 48cbc6b225SStefano Zampini for (ii = 0, aij->nonzerorowcnt = 0, aij->rmax = 0; ii < m; ii++) { 49cbc6b225SStefano Zampini const PetscInt rnz = i[ii + 1] - i[ii]; 50cbc6b225SStefano Zampini aij->nonzerorowcnt += !!rnz; 51cbc6b225SStefano Zampini aij->rmax = PetscMax(aij->rmax, rnz); 52cbc6b225SStefano Zampini aij->ilen[ii] = aij->imax[ii] = i[ii + 1] - i[ii]; 53cbc6b225SStefano Zampini } 54cbc6b225SStefano Zampini aij->maxnz = i[m]; 55cbc6b225SStefano Zampini aij->nz = i[m]; 564222ddf1SHong Zhang 579f0612e4SBarry Smith if (ofree_a) PetscCall(PetscShmgetDeallocateArray((void **)&aij->a)); 589f0612e4SBarry Smith if (ofree_ij) PetscCall(PetscShmgetDeallocateArray((void **)&aij->j)); 599f0612e4SBarry Smith if (ofree_ij) PetscCall(PetscShmgetDeallocateArray((void **)&aij->i)); 609f0612e4SBarry Smith 614222ddf1SHong Zhang aij->i = i; 624222ddf1SHong Zhang aij->j = j; 634222ddf1SHong Zhang aij->a = a; 644222ddf1SHong Zhang aij->nonew = -1; /* this indicates that inserting a new value in the matrix that generates a new nonzero is an error */ 654222ddf1SHong Zhang aij->free_a = PETSC_FALSE; 664222ddf1SHong Zhang aij->free_ij = PETSC_FALSE; 679566063dSJacob Faibussowitsch PetscCall(MatCheckCompressedRow(mat, aij->nonzerorowcnt, &aij->compressedrow, aij->i, m, 0.6)); 686dc08606SJunchao Zhang // Always build the diag info when i, j are set 696dc08606SJunchao Zhang PetscCall(MatMarkDiagonal_SeqAIJ(mat)); 703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 715c66b693SKris Buschelman } 721c24bd37SHong Zhang 73d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C) 74d71ae5a4SJacob Faibussowitsch { 754222ddf1SHong Zhang Mat_Product *product = C->product; 764222ddf1SHong Zhang MatProductAlgorithm alg; 774222ddf1SHong Zhang PetscBool flg; 784222ddf1SHong Zhang 794222ddf1SHong Zhang PetscFunctionBegin; 804222ddf1SHong Zhang if (product) { 814222ddf1SHong Zhang alg = product->alg; 824222ddf1SHong Zhang } else { 834222ddf1SHong Zhang alg = "sorted"; 844222ddf1SHong Zhang } 854222ddf1SHong Zhang /* sorted */ 869566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "sorted", &flg)); 874222ddf1SHong Zhang if (flg) { 889566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(A, B, fill, C)); 893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 904222ddf1SHong Zhang } 914222ddf1SHong Zhang 924222ddf1SHong Zhang /* scalable */ 939566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 944222ddf1SHong Zhang if (flg) { 959566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(A, B, fill, C)); 963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 974222ddf1SHong Zhang } 984222ddf1SHong Zhang 994222ddf1SHong Zhang /* scalable_fast */ 1009566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable_fast", &flg)); 1014222ddf1SHong Zhang if (flg) { 1029566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(A, B, fill, C)); 1033ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1044222ddf1SHong Zhang } 1054222ddf1SHong Zhang 1064222ddf1SHong Zhang /* heap */ 1079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "heap", &flg)); 1084222ddf1SHong Zhang if (flg) { 1099566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(A, B, fill, C)); 1103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1114222ddf1SHong Zhang } 1124222ddf1SHong Zhang 1134222ddf1SHong Zhang /* btheap */ 1149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "btheap", &flg)); 1154222ddf1SHong Zhang if (flg) { 1169566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(A, B, fill, C)); 1173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1184222ddf1SHong Zhang } 1194222ddf1SHong Zhang 1204222ddf1SHong Zhang /* llcondensed */ 1219566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "llcondensed", &flg)); 1224222ddf1SHong Zhang if (flg) { 1239566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(A, B, fill, C)); 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1254222ddf1SHong Zhang } 1264222ddf1SHong Zhang 1274222ddf1SHong Zhang /* rowmerge */ 1289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "rowmerge", &flg)); 1294222ddf1SHong Zhang if (flg) { 1309566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(A, B, fill, C)); 1313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1324222ddf1SHong Zhang } 1334222ddf1SHong Zhang 1344222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 1359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 1364222ddf1SHong Zhang if (flg) { 1379566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 1383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1394222ddf1SHong Zhang } 1404222ddf1SHong Zhang #endif 1414222ddf1SHong Zhang 1424222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 1434222ddf1SHong Zhang } 1444222ddf1SHong Zhang 145d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(Mat A, Mat B, PetscReal fill, Mat C) 146d71ae5a4SJacob Faibussowitsch { 147b561aa9dSHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 148971236abSHong Zhang PetscInt *ai = a->i, *bi = b->i, *ci, *cj; 149c1ba5575SJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 150b561aa9dSHong Zhang PetscReal afill; 151eca6b86aSHong Zhang PetscInt i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax; 152eec179cfSJacob Faibussowitsch PetscHMapI ta; 153fb908031SHong Zhang PetscBT lnkbt; 1540298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 155b561aa9dSHong Zhang 156b561aa9dSHong Zhang PetscFunctionBegin; 157bd958071SHong Zhang /* Get ci and cj */ 158fb908031SHong Zhang /* Allocate ci array, arrays for fill computation and */ 159fb908031SHong Zhang /* free space for accumulating nonzero column info */ 1609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 161fb908031SHong Zhang ci[0] = 0; 162fb908031SHong Zhang 163fb908031SHong Zhang /* create and initialize a linked list */ 164eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(bn, &ta)); 165c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b, bm, ta); 166eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 167eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 168eca6b86aSHong Zhang 1699566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, bn, &lnk, &lnkbt)); 170fb908031SHong Zhang 171fb908031SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 1729566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 1732205254eSKarl Rupp 174fb908031SHong Zhang current_space = free_space; 175fb908031SHong Zhang 176fb908031SHong Zhang /* Determine ci and cj */ 177fb908031SHong Zhang for (i = 0; i < am; i++) { 178fb908031SHong Zhang anzi = ai[i + 1] - ai[i]; 179fb908031SHong Zhang aj = a->j + ai[i]; 180fb908031SHong Zhang for (j = 0; j < anzi; j++) { 181fb908031SHong Zhang brow = aj[j]; 182fb908031SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 183fb908031SHong Zhang bj = b->j + bi[brow]; 184fb908031SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 1859566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(bnzj, bj, lnk, lnkbt)); 186fb908031SHong Zhang } 1878c78258cSHong Zhang /* add possible missing diagonal entry */ 18848a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted(1, &i, lnk, lnkbt)); 189fb908031SHong Zhang cnzi = lnk[0]; 190fb908031SHong Zhang 191fb908031SHong Zhang /* If free space is not available, make more free space */ 192fb908031SHong Zhang /* Double the amount of total space in the list */ 193fb908031SHong Zhang if (current_space->local_remaining < cnzi) { 1949566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), ¤t_space)); 195fb908031SHong Zhang ndouble++; 196fb908031SHong Zhang } 197fb908031SHong Zhang 198fb908031SHong Zhang /* Copy data into free space, then initialize lnk */ 1999566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(bn, cnzi, current_space->array, lnk, lnkbt)); 2002205254eSKarl Rupp 201fb908031SHong Zhang current_space->array += cnzi; 202fb908031SHong Zhang current_space->local_used += cnzi; 203fb908031SHong Zhang current_space->local_remaining -= cnzi; 2042205254eSKarl Rupp 205fb908031SHong Zhang ci[i + 1] = ci[i] + cnzi; 206fb908031SHong Zhang } 207fb908031SHong Zhang 208fb908031SHong Zhang /* Column indices are in the list of free space */ 209fb908031SHong Zhang /* Allocate space for cj, initialize cj, and */ 210fb908031SHong Zhang /* destroy list of free space and other temporary array(s) */ 2119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am] + 1, &cj)); 2129566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 2139566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy(lnk, lnkbt)); 214b561aa9dSHong Zhang 21526be0446SHong Zhang /* put together the new symbolic matrix */ 2169566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 2179566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 21858c24d83SHong Zhang 21958c24d83SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 22058c24d83SHong Zhang /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 221f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 222aa1aec99SHong Zhang c->free_a = PETSC_FALSE; 223e6b907acSBarry Smith c->free_ij = PETSC_TRUE; 22458c24d83SHong Zhang c->nonew = 0; 2254222ddf1SHong Zhang 2264222ddf1SHong Zhang /* fast, needs non-scalable O(bn) array 'abdense' */ 2274222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 2280b7e3e3dSHong Zhang 2297212da7cSHong Zhang /* set MatInfo */ 2307212da7cSHong Zhang afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 231f2b054eeSHong Zhang if (afill < 1.0) afill = 1.0; 2324222ddf1SHong Zhang C->info.mallocs = ndouble; 2334222ddf1SHong Zhang C->info.fill_ratio_given = fill; 2344222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 2357212da7cSHong Zhang 2367212da7cSHong Zhang #if defined(PETSC_USE_INFO) 2377212da7cSHong Zhang if (ci[am]) { 2389566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 2399566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 240f2b054eeSHong Zhang } else { 2419566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 242be0fcf8dSHong Zhang } 243f2b054eeSHong Zhang #endif 2443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24558c24d83SHong Zhang } 246d50806bdSBarry Smith 247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(Mat A, Mat B, Mat C) 248d71ae5a4SJacob Faibussowitsch { 249d13dce4bSSatish Balay PetscLogDouble flops = 0.0; 250d50806bdSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 251d50806bdSBarry Smith Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 252d50806bdSBarry Smith Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; 25338baddfdSBarry Smith PetscInt *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, *bjj, *ci = c->i, *cj = c->j; 254c58ca2e3SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n; 255519eb980SHong Zhang PetscInt i, j, k, anzi, bnzi, cnzi, brow; 2562e5835c6SStefano Zampini PetscScalar *ca, valtmp; 257aa1aec99SHong Zhang PetscScalar *ab_dense; 2586718818eSStefano Zampini PetscContainer cab_dense; 2592e5835c6SStefano Zampini const PetscScalar *aa, *ba, *baj; 260d50806bdSBarry Smith 261d50806bdSBarry Smith PetscFunctionBegin; 2629566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &aa)); 2639566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &ba)); 264aa1aec99SHong Zhang if (!c->a) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */ 2659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[cm] + 1, &ca)); 266aa1aec99SHong Zhang c->a = ca; 267aa1aec99SHong Zhang c->free_a = PETSC_TRUE; 2686718818eSStefano Zampini } else ca = c->a; 2696718818eSStefano Zampini 2706718818eSStefano Zampini /* TODO this should be done in the symbolic phase */ 2716718818eSStefano Zampini /* However, this function is so heavily used (sometimes in an hidden way through multnumeric function pointers 2726718818eSStefano Zampini that is hard to eradicate) */ 2739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)C, "__PETSc__ab_dense", (PetscObject *)&cab_dense)); 2746718818eSStefano Zampini if (!cab_dense) { 2759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(B->cmap->N, &ab_dense)); 276*49abdd8aSBarry Smith PetscCall(PetscObjectContainerCompose((PetscObject)C, "__PETSc__ab_dense", ab_dense, PetscCtxDestroyDefault)); 27703e76207SPierre Jolivet } else PetscCall(PetscContainerGetPointer(cab_dense, (void **)&ab_dense)); 2789566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ab_dense, B->cmap->N)); 279aa1aec99SHong Zhang 280c124e916SHong Zhang /* clean old values in C */ 2819566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm])); 282d50806bdSBarry Smith /* Traverse A row-wise. */ 283d50806bdSBarry Smith /* Build the ith row in C by summing over nonzero columns in A, */ 284d50806bdSBarry Smith /* the rows of B corresponding to nonzeros of A. */ 285d50806bdSBarry Smith for (i = 0; i < am; i++) { 286d50806bdSBarry Smith anzi = ai[i + 1] - ai[i]; 287d50806bdSBarry Smith for (j = 0; j < anzi; j++) { 288519eb980SHong Zhang brow = aj[j]; 289d50806bdSBarry Smith bnzi = bi[brow + 1] - bi[brow]; 2903b51c7ffSStefano Zampini bjj = PetscSafePointerPlusOffset(bj, bi[brow]); 2913b51c7ffSStefano Zampini baj = PetscSafePointerPlusOffset(ba, bi[brow]); 292519eb980SHong Zhang /* perform dense axpy */ 29336ec6d2dSHong Zhang valtmp = aa[j]; 294ad540459SPierre Jolivet for (k = 0; k < bnzi; k++) ab_dense[bjj[k]] += valtmp * baj[k]; 295519eb980SHong Zhang flops += 2 * bnzi; 296519eb980SHong Zhang } 2978e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(aj, anzi); 2988e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, anzi); 299c58ca2e3SHong Zhang 300c58ca2e3SHong Zhang cnzi = ci[i + 1] - ci[i]; 301519eb980SHong Zhang for (k = 0; k < cnzi; k++) { 302519eb980SHong Zhang ca[k] += ab_dense[cj[k]]; 303519eb980SHong Zhang ab_dense[cj[k]] = 0.0; /* zero ab_dense */ 304519eb980SHong Zhang } 305519eb980SHong Zhang flops += cnzi; 3068e3a54c0SPierre Jolivet cj = PetscSafePointerPlusOffset(cj, cnzi); 3079371c9d4SSatish Balay ca += cnzi; 308519eb980SHong Zhang } 3092e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 3102e5835c6SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 3112e5835c6SStefano Zampini #endif 3129566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3139566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3149566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 3159566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &aa)); 3169566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 318c58ca2e3SHong Zhang } 319c58ca2e3SHong Zhang 320d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(Mat A, Mat B, Mat C) 321d71ae5a4SJacob Faibussowitsch { 322c58ca2e3SHong Zhang PetscLogDouble flops = 0.0; 323c58ca2e3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 324c58ca2e3SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 325c58ca2e3SHong Zhang Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; 326c58ca2e3SHong Zhang PetscInt *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, *bjj, *ci = c->i, *cj = c->j; 327c58ca2e3SHong Zhang PetscInt am = A->rmap->N, cm = C->rmap->N; 328c58ca2e3SHong Zhang PetscInt i, j, k, anzi, bnzi, cnzi, brow; 3292e5835c6SStefano Zampini PetscScalar *ca = c->a, valtmp; 3302e5835c6SStefano Zampini const PetscScalar *aa, *ba, *baj; 331c58ca2e3SHong Zhang PetscInt nextb; 332c58ca2e3SHong Zhang 333c58ca2e3SHong Zhang PetscFunctionBegin; 3349566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &aa)); 3359566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &ba)); 336cf742fccSHong Zhang if (!ca) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */ 3379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[cm] + 1, &ca)); 338cf742fccSHong Zhang c->a = ca; 339cf742fccSHong Zhang c->free_a = PETSC_TRUE; 340cf742fccSHong Zhang } 341cf742fccSHong Zhang 342c58ca2e3SHong Zhang /* clean old values in C */ 3439566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm])); 344c58ca2e3SHong Zhang /* Traverse A row-wise. */ 345c58ca2e3SHong Zhang /* Build the ith row in C by summing over nonzero columns in A, */ 346c58ca2e3SHong Zhang /* the rows of B corresponding to nonzeros of A. */ 347519eb980SHong Zhang for (i = 0; i < am; i++) { 348519eb980SHong Zhang anzi = ai[i + 1] - ai[i]; 349519eb980SHong Zhang cnzi = ci[i + 1] - ci[i]; 350519eb980SHong Zhang for (j = 0; j < anzi; j++) { 351519eb980SHong Zhang brow = aj[j]; 352519eb980SHong Zhang bnzi = bi[brow + 1] - bi[brow]; 353519eb980SHong Zhang bjj = bj + bi[brow]; 354519eb980SHong Zhang baj = ba + bi[brow]; 355519eb980SHong Zhang /* perform sparse axpy */ 35636ec6d2dSHong Zhang valtmp = aa[j]; 357c124e916SHong Zhang nextb = 0; 358c124e916SHong Zhang for (k = 0; nextb < bnzi; k++) { 359c124e916SHong Zhang if (cj[k] == bjj[nextb]) { /* ccol == bcol */ 36036ec6d2dSHong Zhang ca[k] += valtmp * baj[nextb++]; 361c124e916SHong Zhang } 362d50806bdSBarry Smith } 363d50806bdSBarry Smith flops += 2 * bnzi; 364d50806bdSBarry Smith } 3659371c9d4SSatish Balay aj += anzi; 3669371c9d4SSatish Balay aa += anzi; 3679371c9d4SSatish Balay cj += cnzi; 3689371c9d4SSatish Balay ca += cnzi; 369d50806bdSBarry Smith } 3702e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 3712e5835c6SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 3722e5835c6SStefano Zampini #endif 3739566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3749566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3759566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 3769566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &aa)); 3779566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 379d50806bdSBarry Smith } 380bc011b1eSHong Zhang 381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(Mat A, Mat B, PetscReal fill, Mat C) 382d71ae5a4SJacob Faibussowitsch { 38325296bd5SBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 38425296bd5SBarry Smith PetscInt *ai = a->i, *bi = b->i, *ci, *cj; 3853c50cad2SHong Zhang PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 38625296bd5SBarry Smith MatScalar *ca; 38725296bd5SBarry Smith PetscReal afill; 388eca6b86aSHong Zhang PetscInt i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax; 389eec179cfSJacob Faibussowitsch PetscHMapI ta; 3900298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 39125296bd5SBarry Smith 39225296bd5SBarry Smith PetscFunctionBegin; 3933c50cad2SHong Zhang /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_fast() */ 3943c50cad2SHong Zhang /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 3959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 3963c50cad2SHong Zhang ci[0] = 0; 3973c50cad2SHong Zhang 3983c50cad2SHong Zhang /* create and initialize a linked list */ 399eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(bn, &ta)); 400c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b, bm, ta); 401eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 402eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 403eca6b86aSHong Zhang 4049566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_fast(Crmax, &lnk)); 4053c50cad2SHong Zhang 4063c50cad2SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 4079566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 4083c50cad2SHong Zhang current_space = free_space; 4093c50cad2SHong Zhang 4103c50cad2SHong Zhang /* Determine ci and cj */ 4113c50cad2SHong Zhang for (i = 0; i < am; i++) { 4123c50cad2SHong Zhang anzi = ai[i + 1] - ai[i]; 4133c50cad2SHong Zhang aj = a->j + ai[i]; 4143c50cad2SHong Zhang for (j = 0; j < anzi; j++) { 4153c50cad2SHong Zhang brow = aj[j]; 4163c50cad2SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 4173c50cad2SHong Zhang bj = b->j + bi[brow]; 4183c50cad2SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 4199566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_fast(bnzj, bj, lnk)); 4203c50cad2SHong Zhang } 4218c78258cSHong Zhang /* add possible missing diagonal entry */ 42248a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted_fast(1, &i, lnk)); 4233c50cad2SHong Zhang cnzi = lnk[1]; 4243c50cad2SHong Zhang 4253c50cad2SHong Zhang /* If free space is not available, make more free space */ 4263c50cad2SHong Zhang /* Double the amount of total space in the list */ 4273c50cad2SHong Zhang if (current_space->local_remaining < cnzi) { 4289566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), ¤t_space)); 4293c50cad2SHong Zhang ndouble++; 4303c50cad2SHong Zhang } 4313c50cad2SHong Zhang 4323c50cad2SHong Zhang /* Copy data into free space, then initialize lnk */ 4339566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_fast(cnzi, current_space->array, lnk)); 4342205254eSKarl Rupp 4353c50cad2SHong Zhang current_space->array += cnzi; 4363c50cad2SHong Zhang current_space->local_used += cnzi; 4373c50cad2SHong Zhang current_space->local_remaining -= cnzi; 4382205254eSKarl Rupp 4393c50cad2SHong Zhang ci[i + 1] = ci[i] + cnzi; 4403c50cad2SHong Zhang } 4413c50cad2SHong Zhang 4423c50cad2SHong Zhang /* Column indices are in the list of free space */ 4433c50cad2SHong Zhang /* Allocate space for cj, initialize cj, and */ 4443c50cad2SHong Zhang /* destroy list of free space and other temporary array(s) */ 4459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am] + 1, &cj)); 4469566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 4479566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_fast(lnk)); 44825296bd5SBarry Smith 44925296bd5SBarry Smith /* Allocate space for ca */ 4509566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[am] + 1, &ca)); 45125296bd5SBarry Smith 45225296bd5SBarry Smith /* put together the new symbolic matrix */ 4539566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, ca, ((PetscObject)A)->type_name, C)); 4549566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 45525296bd5SBarry Smith 45625296bd5SBarry Smith /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 45725296bd5SBarry Smith /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 458f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 45925296bd5SBarry Smith c->free_a = PETSC_TRUE; 46025296bd5SBarry Smith c->free_ij = PETSC_TRUE; 46125296bd5SBarry Smith c->nonew = 0; 4622205254eSKarl Rupp 4634222ddf1SHong Zhang /* slower, less memory */ 4644222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable; 46525296bd5SBarry Smith 46625296bd5SBarry Smith /* set MatInfo */ 46725296bd5SBarry Smith afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 46825296bd5SBarry Smith if (afill < 1.0) afill = 1.0; 4694222ddf1SHong Zhang C->info.mallocs = ndouble; 4704222ddf1SHong Zhang C->info.fill_ratio_given = fill; 4714222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 47225296bd5SBarry Smith 47325296bd5SBarry Smith #if defined(PETSC_USE_INFO) 47425296bd5SBarry Smith if (ci[am]) { 4759566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 4769566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 47725296bd5SBarry Smith } else { 4789566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 47925296bd5SBarry Smith } 48025296bd5SBarry Smith #endif 4813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 48225296bd5SBarry Smith } 48325296bd5SBarry Smith 484d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(Mat A, Mat B, PetscReal fill, Mat C) 485d71ae5a4SJacob Faibussowitsch { 486e9e4536cSHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 487bf9555e6SHong Zhang PetscInt *ai = a->i, *bi = b->i, *ci, *cj; 48825c41797SHong Zhang PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 489e9e4536cSHong Zhang MatScalar *ca; 490e9e4536cSHong Zhang PetscReal afill; 491eca6b86aSHong Zhang PetscInt i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax; 492eec179cfSJacob Faibussowitsch PetscHMapI ta; 4930298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 494e9e4536cSHong Zhang 495e9e4536cSHong Zhang PetscFunctionBegin; 496bd958071SHong Zhang /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_Scalalbe() */ 497bd958071SHong Zhang /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 4989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 499bd958071SHong Zhang ci[0] = 0; 500bd958071SHong Zhang 501bd958071SHong Zhang /* create and initialize a linked list */ 502eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(bn, &ta)); 503c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b, bm, ta); 504eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 505eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 5069566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Crmax, &lnk)); 507bd958071SHong Zhang 508bd958071SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 5099566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 510bd958071SHong Zhang current_space = free_space; 511bd958071SHong Zhang 512bd958071SHong Zhang /* Determine ci and cj */ 513bd958071SHong Zhang for (i = 0; i < am; i++) { 514bd958071SHong Zhang anzi = ai[i + 1] - ai[i]; 515bd958071SHong Zhang aj = a->j + ai[i]; 516bd958071SHong Zhang for (j = 0; j < anzi; j++) { 517bd958071SHong Zhang brow = aj[j]; 518bd958071SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 519bd958071SHong Zhang bj = b->j + bi[brow]; 520bd958071SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 5219566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(bnzj, bj, lnk)); 522bd958071SHong Zhang } 5238c78258cSHong Zhang /* add possible missing diagonal entry */ 52448a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted_Scalable(1, &i, lnk)); 5258c78258cSHong Zhang 526bd958071SHong Zhang cnzi = lnk[0]; 527bd958071SHong Zhang 528bd958071SHong Zhang /* If free space is not available, make more free space */ 529bd958071SHong Zhang /* Double the amount of total space in the list */ 530bd958071SHong Zhang if (current_space->local_remaining < cnzi) { 5319566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), ¤t_space)); 532bd958071SHong Zhang ndouble++; 533bd958071SHong Zhang } 534bd958071SHong Zhang 535bd958071SHong Zhang /* Copy data into free space, then initialize lnk */ 5369566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(cnzi, current_space->array, lnk)); 5372205254eSKarl Rupp 538bd958071SHong Zhang current_space->array += cnzi; 539bd958071SHong Zhang current_space->local_used += cnzi; 540bd958071SHong Zhang current_space->local_remaining -= cnzi; 5412205254eSKarl Rupp 542bd958071SHong Zhang ci[i + 1] = ci[i] + cnzi; 543bd958071SHong Zhang } 544bd958071SHong Zhang 545bd958071SHong Zhang /* Column indices are in the list of free space */ 546bd958071SHong Zhang /* Allocate space for cj, initialize cj, and */ 547bd958071SHong Zhang /* destroy list of free space and other temporary array(s) */ 5489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am] + 1, &cj)); 5499566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 5509566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 551e9e4536cSHong Zhang 552e9e4536cSHong Zhang /* Allocate space for ca */ 5539566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[am] + 1, &ca)); 554e9e4536cSHong Zhang 555e9e4536cSHong Zhang /* put together the new symbolic matrix */ 5569566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, ca, ((PetscObject)A)->type_name, C)); 5579566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 558e9e4536cSHong Zhang 559e9e4536cSHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 560e9e4536cSHong Zhang /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 561f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 562e9e4536cSHong Zhang c->free_a = PETSC_TRUE; 563e9e4536cSHong Zhang c->free_ij = PETSC_TRUE; 564e9e4536cSHong Zhang c->nonew = 0; 5652205254eSKarl Rupp 5664222ddf1SHong Zhang /* slower, less memory */ 5674222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable; 568e9e4536cSHong Zhang 569e9e4536cSHong Zhang /* set MatInfo */ 570e9e4536cSHong Zhang afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 571e9e4536cSHong Zhang if (afill < 1.0) afill = 1.0; 5724222ddf1SHong Zhang C->info.mallocs = ndouble; 5734222ddf1SHong Zhang C->info.fill_ratio_given = fill; 5744222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 575e9e4536cSHong Zhang 576e9e4536cSHong Zhang #if defined(PETSC_USE_INFO) 577e9e4536cSHong Zhang if (ci[am]) { 5789566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 5799566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 580e9e4536cSHong Zhang } else { 5819566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 582e9e4536cSHong Zhang } 583e9e4536cSHong Zhang #endif 5843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 585e9e4536cSHong Zhang } 586e9e4536cSHong Zhang 587d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(Mat A, Mat B, PetscReal fill, Mat C) 588d71ae5a4SJacob Faibussowitsch { 5890ced3a2bSJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 5900ced3a2bSJed Brown const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j; 5910ced3a2bSJed Brown PetscInt *ci, *cj, *bb; 5920ced3a2bSJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 5930ced3a2bSJed Brown PetscReal afill; 5940ced3a2bSJed Brown PetscInt i, j, col, ndouble = 0; 5950298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 5960ced3a2bSJed Brown PetscHeap h; 5970ced3a2bSJed Brown 5980ced3a2bSJed Brown PetscFunctionBegin; 599cd093f1dSJed Brown /* Get ci and cj - by merging sorted rows using a heap */ 6000ced3a2bSJed Brown /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 6019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 6020ced3a2bSJed Brown ci[0] = 0; 6030ced3a2bSJed Brown 6040ced3a2bSJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 6059566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 6060ced3a2bSJed Brown current_space = free_space; 6070ced3a2bSJed Brown 6089566063dSJacob Faibussowitsch PetscCall(PetscHeapCreate(a->rmax, &h)); 6099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->rmax, &bb)); 6100ced3a2bSJed Brown 6110ced3a2bSJed Brown /* Determine ci and cj */ 6120ced3a2bSJed Brown for (i = 0; i < am; i++) { 6130ced3a2bSJed Brown const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 6140ced3a2bSJed Brown const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 6150ced3a2bSJed Brown ci[i + 1] = ci[i]; 6160ced3a2bSJed Brown /* Populate the min heap */ 6170ced3a2bSJed Brown for (j = 0; j < anzi; j++) { 6180ced3a2bSJed Brown bb[j] = bi[acol[j]]; /* bb points at the start of the row */ 6190ced3a2bSJed Brown if (bb[j] < bi[acol[j] + 1]) { /* Add if row is nonempty */ 6209566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h, j, bj[bb[j]++])); 6210ced3a2bSJed Brown } 6220ced3a2bSJed Brown } 6230ced3a2bSJed Brown /* Pick off the min element, adding it to free space */ 6249566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 6250ced3a2bSJed Brown while (j >= 0) { 6260ced3a2bSJed Brown if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */ 6279566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2, current_space->total_array_size), 16 << 20), ¤t_space)); 6280ced3a2bSJed Brown ndouble++; 6290ced3a2bSJed Brown } 6300ced3a2bSJed Brown *(current_space->array++) = col; 6310ced3a2bSJed Brown current_space->local_used++; 6320ced3a2bSJed Brown current_space->local_remaining--; 6330ced3a2bSJed Brown ci[i + 1]++; 6340ced3a2bSJed Brown 6350ced3a2bSJed Brown /* stash if anything else remains in this row of B */ 6369566063dSJacob Faibussowitsch if (bb[j] < bi[acol[j] + 1]) PetscCall(PetscHeapStash(h, j, bj[bb[j]++])); 6370ced3a2bSJed Brown while (1) { /* pop and stash any other rows of B that also had an entry in this column */ 6380ced3a2bSJed Brown PetscInt j2, col2; 6399566063dSJacob Faibussowitsch PetscCall(PetscHeapPeek(h, &j2, &col2)); 6400ced3a2bSJed Brown if (col2 != col) break; 6419566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j2, &col2)); 6429566063dSJacob Faibussowitsch if (bb[j2] < bi[acol[j2] + 1]) PetscCall(PetscHeapStash(h, j2, bj[bb[j2]++])); 6430ced3a2bSJed Brown } 6440ced3a2bSJed Brown /* Put any stashed elements back into the min heap */ 6459566063dSJacob Faibussowitsch PetscCall(PetscHeapUnstash(h)); 6469566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 6470ced3a2bSJed Brown } 6480ced3a2bSJed Brown } 6499566063dSJacob Faibussowitsch PetscCall(PetscFree(bb)); 6509566063dSJacob Faibussowitsch PetscCall(PetscHeapDestroy(&h)); 6510ced3a2bSJed Brown 6520ced3a2bSJed Brown /* Column indices are in the list of free space */ 6530ced3a2bSJed Brown /* Allocate space for cj, initialize cj, and */ 6540ced3a2bSJed Brown /* destroy list of free space and other temporary array(s) */ 6559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am], &cj)); 6569566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 6570ced3a2bSJed Brown 6580ced3a2bSJed Brown /* put together the new symbolic matrix */ 6599566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 6609566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6610ced3a2bSJed Brown 6620ced3a2bSJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6630ced3a2bSJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 664f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 6650ced3a2bSJed Brown c->free_a = PETSC_TRUE; 6660ced3a2bSJed Brown c->free_ij = PETSC_TRUE; 6670ced3a2bSJed Brown c->nonew = 0; 66826fbe8dcSKarl Rupp 6694222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 6700ced3a2bSJed Brown 6710ced3a2bSJed Brown /* set MatInfo */ 6720ced3a2bSJed Brown afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 6730ced3a2bSJed Brown if (afill < 1.0) afill = 1.0; 6744222ddf1SHong Zhang C->info.mallocs = ndouble; 6754222ddf1SHong Zhang C->info.fill_ratio_given = fill; 6764222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 6770ced3a2bSJed Brown 6780ced3a2bSJed Brown #if defined(PETSC_USE_INFO) 6790ced3a2bSJed Brown if (ci[am]) { 6809566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 6819566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 6820ced3a2bSJed Brown } else { 6839566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 6840ced3a2bSJed Brown } 6850ced3a2bSJed Brown #endif 6863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6870ced3a2bSJed Brown } 688e9e4536cSHong Zhang 689d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(Mat A, Mat B, PetscReal fill, Mat C) 690d71ae5a4SJacob Faibussowitsch { 6918a07c6f1SJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 6928a07c6f1SJed Brown const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j; 6938a07c6f1SJed Brown PetscInt *ci, *cj, *bb; 6948a07c6f1SJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 6958a07c6f1SJed Brown PetscReal afill; 6968a07c6f1SJed Brown PetscInt i, j, col, ndouble = 0; 6970298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 6988a07c6f1SJed Brown PetscHeap h; 6998a07c6f1SJed Brown PetscBT bt; 7008a07c6f1SJed Brown 7018a07c6f1SJed Brown PetscFunctionBegin; 702cd093f1dSJed Brown /* Get ci and cj - using a heap for the sorted rows, but use BT so that each index is only added once */ 7038a07c6f1SJed Brown /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 7049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 7058a07c6f1SJed Brown ci[0] = 0; 7068a07c6f1SJed Brown 7078a07c6f1SJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 7089566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 7092205254eSKarl Rupp 7108a07c6f1SJed Brown current_space = free_space; 7118a07c6f1SJed Brown 7129566063dSJacob Faibussowitsch PetscCall(PetscHeapCreate(a->rmax, &h)); 7139566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->rmax, &bb)); 7149566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(bn, &bt)); 7158a07c6f1SJed Brown 7168a07c6f1SJed Brown /* Determine ci and cj */ 7178a07c6f1SJed Brown for (i = 0; i < am; i++) { 7188a07c6f1SJed Brown const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 7198a07c6f1SJed Brown const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 7208a07c6f1SJed Brown const PetscInt *fptr = current_space->array; /* Save beginning of the row so we can clear the BT later */ 7218a07c6f1SJed Brown ci[i + 1] = ci[i]; 7228a07c6f1SJed Brown /* Populate the min heap */ 7238a07c6f1SJed Brown for (j = 0; j < anzi; j++) { 7248a07c6f1SJed Brown PetscInt brow = acol[j]; 7258a07c6f1SJed Brown for (bb[j] = bi[brow]; bb[j] < bi[brow + 1]; bb[j]++) { 7268a07c6f1SJed Brown PetscInt bcol = bj[bb[j]]; 7278a07c6f1SJed Brown if (!PetscBTLookupSet(bt, bcol)) { /* new entry */ 7289566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h, j, bcol)); 7298a07c6f1SJed Brown bb[j]++; 7308a07c6f1SJed Brown break; 7318a07c6f1SJed Brown } 7328a07c6f1SJed Brown } 7338a07c6f1SJed Brown } 7348a07c6f1SJed Brown /* Pick off the min element, adding it to free space */ 7359566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 7368a07c6f1SJed Brown while (j >= 0) { 7378a07c6f1SJed Brown if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */ 7380298fd71SBarry Smith fptr = NULL; /* need PetscBTMemzero */ 7399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2, current_space->total_array_size), 16 << 20), ¤t_space)); 7408a07c6f1SJed Brown ndouble++; 7418a07c6f1SJed Brown } 7428a07c6f1SJed Brown *(current_space->array++) = col; 7438a07c6f1SJed Brown current_space->local_used++; 7448a07c6f1SJed Brown current_space->local_remaining--; 7458a07c6f1SJed Brown ci[i + 1]++; 7468a07c6f1SJed Brown 7478a07c6f1SJed Brown /* stash if anything else remains in this row of B */ 7488a07c6f1SJed Brown for (; bb[j] < bi[acol[j] + 1]; bb[j]++) { 7498a07c6f1SJed Brown PetscInt bcol = bj[bb[j]]; 7508a07c6f1SJed Brown if (!PetscBTLookupSet(bt, bcol)) { /* new entry */ 7519566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h, j, bcol)); 7528a07c6f1SJed Brown bb[j]++; 7538a07c6f1SJed Brown break; 7548a07c6f1SJed Brown } 7558a07c6f1SJed Brown } 7569566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 7578a07c6f1SJed Brown } 7588a07c6f1SJed Brown if (fptr) { /* Clear the bits for this row */ 7599566063dSJacob Faibussowitsch for (; fptr < current_space->array; fptr++) PetscCall(PetscBTClear(bt, *fptr)); 7608a07c6f1SJed Brown } else { /* We reallocated so we don't remember (easily) how to clear only the bits we changed */ 7619566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(bn, bt)); 7628a07c6f1SJed Brown } 7638a07c6f1SJed Brown } 7649566063dSJacob Faibussowitsch PetscCall(PetscFree(bb)); 7659566063dSJacob Faibussowitsch PetscCall(PetscHeapDestroy(&h)); 7669566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 7678a07c6f1SJed Brown 7688a07c6f1SJed Brown /* Column indices are in the list of free space */ 7698a07c6f1SJed Brown /* Allocate space for cj, initialize cj, and */ 7708a07c6f1SJed Brown /* destroy list of free space and other temporary array(s) */ 7719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am], &cj)); 7729566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 7738a07c6f1SJed Brown 7748a07c6f1SJed Brown /* put together the new symbolic matrix */ 7759566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 7769566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 7778a07c6f1SJed Brown 7788a07c6f1SJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 7798a07c6f1SJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 780f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 7818a07c6f1SJed Brown c->free_a = PETSC_TRUE; 7828a07c6f1SJed Brown c->free_ij = PETSC_TRUE; 7838a07c6f1SJed Brown c->nonew = 0; 78426fbe8dcSKarl Rupp 7854222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 7868a07c6f1SJed Brown 7878a07c6f1SJed Brown /* set MatInfo */ 7888a07c6f1SJed Brown afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 7898a07c6f1SJed Brown if (afill < 1.0) afill = 1.0; 7904222ddf1SHong Zhang C->info.mallocs = ndouble; 7914222ddf1SHong Zhang C->info.fill_ratio_given = fill; 7924222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 7938a07c6f1SJed Brown 7948a07c6f1SJed Brown #if defined(PETSC_USE_INFO) 7958a07c6f1SJed Brown if (ci[am]) { 7969566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 7979566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 7988a07c6f1SJed Brown } else { 7999566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 8008a07c6f1SJed Brown } 8018a07c6f1SJed Brown #endif 8023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8038a07c6f1SJed Brown } 8048a07c6f1SJed Brown 805d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(Mat A, Mat B, PetscReal fill, Mat C) 806d71ae5a4SJacob Faibussowitsch { 807d7ed1a4dSandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 808d7ed1a4dSandi selinger const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j, *inputi, *inputj, *inputcol, *inputcol_L1; 809d7ed1a4dSandi selinger PetscInt *ci, *cj, *outputj, worki_L1[9], worki_L2[9]; 810d7ed1a4dSandi selinger PetscInt c_maxmem, a_maxrownnz = 0, a_rownnz; 811d7ed1a4dSandi selinger const PetscInt workcol[8] = {0, 1, 2, 3, 4, 5, 6, 7}; 812d7ed1a4dSandi selinger const PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 813d7ed1a4dSandi selinger const PetscInt *brow_ptr[8], *brow_end[8]; 814d7ed1a4dSandi selinger PetscInt window[8]; 815d7ed1a4dSandi selinger PetscInt window_min, old_window_min, ci_nnz, outputi_nnz = 0, L1_nrows, L2_nrows; 816d7ed1a4dSandi selinger PetscInt i, k, ndouble = 0, L1_rowsleft, rowsleft; 817d7ed1a4dSandi selinger PetscReal afill; 818f83700f2Sandi selinger PetscInt *workj_L1, *workj_L2, *workj_L3; 8197660c4dbSandi selinger PetscInt L1_nnz, L2_nnz; 820d7ed1a4dSandi selinger 821d7ed1a4dSandi selinger /* Step 1: Get upper bound on memory required for allocation. 822d7ed1a4dSandi selinger Because of the way virtual memory works, 823d7ed1a4dSandi selinger only the memory pages that are actually needed will be physically allocated. */ 824d7ed1a4dSandi selinger PetscFunctionBegin; 8259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 1, &ci)); 826d7ed1a4dSandi selinger for (i = 0; i < am; i++) { 827d7ed1a4dSandi selinger const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 828d7ed1a4dSandi selinger const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 829d7ed1a4dSandi selinger a_rownnz = 0; 830d7ed1a4dSandi selinger for (k = 0; k < anzi; ++k) { 831d7ed1a4dSandi selinger a_rownnz += bi[acol[k] + 1] - bi[acol[k]]; 832d7ed1a4dSandi selinger if (a_rownnz > bn) { 833d7ed1a4dSandi selinger a_rownnz = bn; 834d7ed1a4dSandi selinger break; 835d7ed1a4dSandi selinger } 836d7ed1a4dSandi selinger } 837d7ed1a4dSandi selinger a_maxrownnz = PetscMax(a_maxrownnz, a_rownnz); 838d7ed1a4dSandi selinger } 839d7ed1a4dSandi selinger /* temporary work areas for merging rows */ 8409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz * 8, &workj_L1)); 8419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz * 8, &workj_L2)); 8429566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz, &workj_L3)); 843d7ed1a4dSandi selinger 8447660c4dbSandi selinger /* This should be enough for almost all matrices. If not, memory is reallocated later. */ 8457660c4dbSandi selinger c_maxmem = 8 * (ai[am] + bi[bm]); 846d7ed1a4dSandi selinger /* Step 2: Populate pattern for C */ 8479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(c_maxmem, &cj)); 848d7ed1a4dSandi selinger 849d7ed1a4dSandi selinger ci_nnz = 0; 850d7ed1a4dSandi selinger ci[0] = 0; 851d7ed1a4dSandi selinger worki_L1[0] = 0; 852d7ed1a4dSandi selinger worki_L2[0] = 0; 853d7ed1a4dSandi selinger for (i = 0; i < am; i++) { 854d7ed1a4dSandi selinger const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 855d7ed1a4dSandi selinger const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 856d7ed1a4dSandi selinger rowsleft = anzi; 857d7ed1a4dSandi selinger inputcol_L1 = acol; 858d7ed1a4dSandi selinger L2_nnz = 0; 8597660c4dbSandi selinger L2_nrows = 1; /* Number of rows to be merged on Level 3. output of L3 already exists -> initial value 1 */ 8607660c4dbSandi selinger worki_L2[1] = 0; 86108fe1b3cSKarl Rupp outputi_nnz = 0; 862d7ed1a4dSandi selinger 863d7ed1a4dSandi selinger /* If the number of indices in C so far + the max number of columns in the next row > c_maxmem -> allocate more memory */ 864d7ed1a4dSandi selinger while (ci_nnz + a_maxrownnz > c_maxmem) { 865d7ed1a4dSandi selinger c_maxmem *= 2; 866d7ed1a4dSandi selinger ndouble++; 8679566063dSJacob Faibussowitsch PetscCall(PetscRealloc(sizeof(PetscInt) * c_maxmem, &cj)); 868d7ed1a4dSandi selinger } 869d7ed1a4dSandi selinger 870d7ed1a4dSandi selinger while (rowsleft) { 871d7ed1a4dSandi selinger L1_rowsleft = PetscMin(64, rowsleft); /* In the inner loop max 64 rows of B can be merged */ 872d7ed1a4dSandi selinger L1_nrows = 0; 8737660c4dbSandi selinger L1_nnz = 0; 874d7ed1a4dSandi selinger inputcol = inputcol_L1; 875d7ed1a4dSandi selinger inputi = bi; 876d7ed1a4dSandi selinger inputj = bj; 877d7ed1a4dSandi selinger 878d7ed1a4dSandi selinger /* The following macro is used to specialize for small rows in A. 879d7ed1a4dSandi selinger This helps with compiler unrolling, improving performance substantially. 880f83700f2Sandi selinger Input: inputj inputi inputcol bn 881d7ed1a4dSandi selinger Output: outputj outputi_nnz */ 882d7ed1a4dSandi selinger #define MatMatMultSymbolic_RowMergeMacro(ANNZ) \ 883a8f51744SPierre Jolivet do { \ 884d7ed1a4dSandi selinger window_min = bn; \ 8857660c4dbSandi selinger outputi_nnz = 0; \ 8867660c4dbSandi selinger for (k = 0; k < ANNZ; ++k) { \ 887d7ed1a4dSandi selinger brow_ptr[k] = inputj + inputi[inputcol[k]]; \ 888d7ed1a4dSandi selinger brow_end[k] = inputj + inputi[inputcol[k] + 1]; \ 889d7ed1a4dSandi selinger window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \ 890d7ed1a4dSandi selinger window_min = PetscMin(window[k], window_min); \ 891d7ed1a4dSandi selinger } \ 892d7ed1a4dSandi selinger while (window_min < bn) { \ 893d7ed1a4dSandi selinger outputj[outputi_nnz++] = window_min; \ 894d7ed1a4dSandi selinger /* advance front and compute new minimum */ \ 895d7ed1a4dSandi selinger old_window_min = window_min; \ 896d7ed1a4dSandi selinger window_min = bn; \ 897d7ed1a4dSandi selinger for (k = 0; k < ANNZ; ++k) { \ 898d7ed1a4dSandi selinger if (window[k] == old_window_min) { \ 899d7ed1a4dSandi selinger brow_ptr[k]++; \ 900d7ed1a4dSandi selinger window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \ 901d7ed1a4dSandi selinger } \ 902d7ed1a4dSandi selinger window_min = PetscMin(window[k], window_min); \ 903d7ed1a4dSandi selinger } \ 904a8f51744SPierre Jolivet } \ 905a8f51744SPierre Jolivet } while (0) 906d7ed1a4dSandi selinger 907d7ed1a4dSandi selinger /************** L E V E L 1 ***************/ 908d7ed1a4dSandi selinger /* Merge up to 8 rows of B to L1 work array*/ 909d7ed1a4dSandi selinger while (L1_rowsleft) { 9107660c4dbSandi selinger outputi_nnz = 0; 9117660c4dbSandi selinger if (anzi > 8) outputj = workj_L1 + L1_nnz; /* Level 1 rowmerge*/ 9127660c4dbSandi selinger else outputj = cj + ci_nnz; /* Merge directly to C */ 9137660c4dbSandi selinger 914d7ed1a4dSandi selinger switch (L1_rowsleft) { 9159371c9d4SSatish Balay case 1: 9169371c9d4SSatish Balay brow_ptr[0] = inputj + inputi[inputcol[0]]; 917d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0] + 1]; 918d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 919d7ed1a4dSandi selinger inputcol += L1_rowsleft; 920d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 921d7ed1a4dSandi selinger L1_rowsleft = 0; 922d7ed1a4dSandi selinger break; 9239371c9d4SSatish Balay case 2: 9249371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(2); 925d7ed1a4dSandi selinger inputcol += L1_rowsleft; 926d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 927d7ed1a4dSandi selinger L1_rowsleft = 0; 928d7ed1a4dSandi selinger break; 9299371c9d4SSatish Balay case 3: 9309371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(3); 931d7ed1a4dSandi selinger inputcol += L1_rowsleft; 932d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 933d7ed1a4dSandi selinger L1_rowsleft = 0; 934d7ed1a4dSandi selinger break; 9359371c9d4SSatish Balay case 4: 9369371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(4); 937d7ed1a4dSandi selinger inputcol += L1_rowsleft; 938d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 939d7ed1a4dSandi selinger L1_rowsleft = 0; 940d7ed1a4dSandi selinger break; 9419371c9d4SSatish Balay case 5: 9429371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(5); 943d7ed1a4dSandi selinger inputcol += L1_rowsleft; 944d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 945d7ed1a4dSandi selinger L1_rowsleft = 0; 946d7ed1a4dSandi selinger break; 9479371c9d4SSatish Balay case 6: 9489371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(6); 949d7ed1a4dSandi selinger inputcol += L1_rowsleft; 950d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 951d7ed1a4dSandi selinger L1_rowsleft = 0; 952d7ed1a4dSandi selinger break; 9539371c9d4SSatish Balay case 7: 9549371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(7); 955d7ed1a4dSandi selinger inputcol += L1_rowsleft; 956d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 957d7ed1a4dSandi selinger L1_rowsleft = 0; 958d7ed1a4dSandi selinger break; 9599371c9d4SSatish Balay default: 9609371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(8); 961d7ed1a4dSandi selinger inputcol += 8; 962d7ed1a4dSandi selinger rowsleft -= 8; 963d7ed1a4dSandi selinger L1_rowsleft -= 8; 964d7ed1a4dSandi selinger break; 965d7ed1a4dSandi selinger } 966d7ed1a4dSandi selinger inputcol_L1 = inputcol; 9677660c4dbSandi selinger L1_nnz += outputi_nnz; 9687660c4dbSandi selinger worki_L1[++L1_nrows] = L1_nnz; 969d7ed1a4dSandi selinger } 970d7ed1a4dSandi selinger 971d7ed1a4dSandi selinger /********************** L E V E L 2 ************************/ 972d7ed1a4dSandi selinger /* Merge from L1 work array to either C or to L2 work array */ 973d7ed1a4dSandi selinger if (anzi > 8) { 974d7ed1a4dSandi selinger inputi = worki_L1; 975d7ed1a4dSandi selinger inputj = workj_L1; 976d7ed1a4dSandi selinger inputcol = workcol; 977d7ed1a4dSandi selinger outputi_nnz = 0; 978d7ed1a4dSandi selinger 979d7ed1a4dSandi selinger if (anzi <= 64) outputj = cj + ci_nnz; /* Merge from L1 work array to C */ 980d7ed1a4dSandi selinger else outputj = workj_L2 + L2_nnz; /* Merge from L1 work array to L2 work array */ 981d7ed1a4dSandi selinger 982d7ed1a4dSandi selinger switch (L1_nrows) { 9839371c9d4SSatish Balay case 1: 9849371c9d4SSatish Balay brow_ptr[0] = inputj + inputi[inputcol[0]]; 985d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0] + 1]; 986d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 987d7ed1a4dSandi selinger break; 988d71ae5a4SJacob Faibussowitsch case 2: 989d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(2); 990d71ae5a4SJacob Faibussowitsch break; 991d71ae5a4SJacob Faibussowitsch case 3: 992d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(3); 993d71ae5a4SJacob Faibussowitsch break; 994d71ae5a4SJacob Faibussowitsch case 4: 995d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(4); 996d71ae5a4SJacob Faibussowitsch break; 997d71ae5a4SJacob Faibussowitsch case 5: 998d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(5); 999d71ae5a4SJacob Faibussowitsch break; 1000d71ae5a4SJacob Faibussowitsch case 6: 1001d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(6); 1002d71ae5a4SJacob Faibussowitsch break; 1003d71ae5a4SJacob Faibussowitsch case 7: 1004d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(7); 1005d71ae5a4SJacob Faibussowitsch break; 1006d71ae5a4SJacob Faibussowitsch case 8: 1007d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(8); 1008d71ae5a4SJacob Faibussowitsch break; 1009d71ae5a4SJacob Faibussowitsch default: 1010d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatMatMult logic error: Not merging 1-8 rows from L1 work array!"); 1011d7ed1a4dSandi selinger } 1012d7ed1a4dSandi selinger L2_nnz += outputi_nnz; 1013d7ed1a4dSandi selinger worki_L2[++L2_nrows] = L2_nnz; 1014d7ed1a4dSandi selinger 10157660c4dbSandi selinger /************************ L E V E L 3 **********************/ 10167660c4dbSandi selinger /* Merge from L2 work array to either C or to L2 work array */ 1017d7ed1a4dSandi selinger if (anzi > 64 && (L2_nrows == 8 || rowsleft == 0)) { 1018d7ed1a4dSandi selinger inputi = worki_L2; 1019d7ed1a4dSandi selinger inputj = workj_L2; 1020d7ed1a4dSandi selinger inputcol = workcol; 1021d7ed1a4dSandi selinger outputi_nnz = 0; 1022f83700f2Sandi selinger if (rowsleft) outputj = workj_L3; 1023d7ed1a4dSandi selinger else outputj = cj + ci_nnz; 1024d7ed1a4dSandi selinger switch (L2_nrows) { 10259371c9d4SSatish Balay case 1: 10269371c9d4SSatish Balay brow_ptr[0] = inputj + inputi[inputcol[0]]; 1027d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0] + 1]; 1028d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 1029d7ed1a4dSandi selinger break; 1030d71ae5a4SJacob Faibussowitsch case 2: 1031d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(2); 1032d71ae5a4SJacob Faibussowitsch break; 1033d71ae5a4SJacob Faibussowitsch case 3: 1034d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(3); 1035d71ae5a4SJacob Faibussowitsch break; 1036d71ae5a4SJacob Faibussowitsch case 4: 1037d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(4); 1038d71ae5a4SJacob Faibussowitsch break; 1039d71ae5a4SJacob Faibussowitsch case 5: 1040d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(5); 1041d71ae5a4SJacob Faibussowitsch break; 1042d71ae5a4SJacob Faibussowitsch case 6: 1043d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(6); 1044d71ae5a4SJacob Faibussowitsch break; 1045d71ae5a4SJacob Faibussowitsch case 7: 1046d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(7); 1047d71ae5a4SJacob Faibussowitsch break; 1048d71ae5a4SJacob Faibussowitsch case 8: 1049d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(8); 1050d71ae5a4SJacob Faibussowitsch break; 1051d71ae5a4SJacob Faibussowitsch default: 1052d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatMatMult logic error: Not merging 1-8 rows from L2 work array!"); 1053d7ed1a4dSandi selinger } 1054d7ed1a4dSandi selinger L2_nrows = 1; 10557660c4dbSandi selinger L2_nnz = outputi_nnz; 10567660c4dbSandi selinger worki_L2[1] = outputi_nnz; 10577660c4dbSandi selinger /* Copy to workj_L2 */ 1058d7ed1a4dSandi selinger if (rowsleft) { 10597660c4dbSandi selinger for (k = 0; k < outputi_nnz; ++k) workj_L2[k] = outputj[k]; 1060d7ed1a4dSandi selinger } 1061d7ed1a4dSandi selinger } 1062d7ed1a4dSandi selinger } 1063d7ed1a4dSandi selinger } /* while (rowsleft) */ 1064d7ed1a4dSandi selinger #undef MatMatMultSymbolic_RowMergeMacro 1065d7ed1a4dSandi selinger 1066d7ed1a4dSandi selinger /* terminate current row */ 1067d7ed1a4dSandi selinger ci_nnz += outputi_nnz; 1068d7ed1a4dSandi selinger ci[i + 1] = ci_nnz; 1069d7ed1a4dSandi selinger } 1070d7ed1a4dSandi selinger 1071d7ed1a4dSandi selinger /* Step 3: Create the new symbolic matrix */ 10729566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 10739566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 1074d7ed1a4dSandi selinger 1075d7ed1a4dSandi selinger /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 1076d7ed1a4dSandi selinger /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 1077f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 1078d7ed1a4dSandi selinger c->free_a = PETSC_TRUE; 1079d7ed1a4dSandi selinger c->free_ij = PETSC_TRUE; 1080d7ed1a4dSandi selinger c->nonew = 0; 1081d7ed1a4dSandi selinger 10824222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 1083d7ed1a4dSandi selinger 1084d7ed1a4dSandi selinger /* set MatInfo */ 1085d7ed1a4dSandi selinger afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 1086d7ed1a4dSandi selinger if (afill < 1.0) afill = 1.0; 10874222ddf1SHong Zhang C->info.mallocs = ndouble; 10884222ddf1SHong Zhang C->info.fill_ratio_given = fill; 10894222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1090d7ed1a4dSandi selinger 1091d7ed1a4dSandi selinger #if defined(PETSC_USE_INFO) 1092d7ed1a4dSandi selinger if (ci[am]) { 10939566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 10949566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1095d7ed1a4dSandi selinger } else { 10969566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1097d7ed1a4dSandi selinger } 1098d7ed1a4dSandi selinger #endif 1099d7ed1a4dSandi selinger 1100d7ed1a4dSandi selinger /* Step 4: Free temporary work areas */ 11019566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L1)); 11029566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L2)); 11039566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L3)); 11043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1105d7ed1a4dSandi selinger } 1106d7ed1a4dSandi selinger 1107cd093f1dSJed Brown /* concatenate unique entries and then sort */ 1108d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(Mat A, Mat B, PetscReal fill, Mat C) 1109d71ae5a4SJacob Faibussowitsch { 1110cd093f1dSJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 1111cd093f1dSJed Brown const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j; 11128c78258cSHong Zhang PetscInt *ci, *cj, bcol; 1113cd093f1dSJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 1114cd093f1dSJed Brown PetscReal afill; 1115cd093f1dSJed Brown PetscInt i, j, ndouble = 0; 1116cd093f1dSJed Brown PetscSegBuffer seg, segrow; 1117cd093f1dSJed Brown char *seen; 1118cd093f1dSJed Brown 1119cd093f1dSJed Brown PetscFunctionBegin; 11209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 1, &ci)); 1121cd093f1dSJed Brown ci[0] = 0; 1122cd093f1dSJed Brown 1123cd093f1dSJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 11249566063dSJacob Faibussowitsch PetscCall(PetscSegBufferCreate(sizeof(PetscInt), (PetscInt)(fill * (ai[am] + bi[bm])), &seg)); 11259566063dSJacob Faibussowitsch PetscCall(PetscSegBufferCreate(sizeof(PetscInt), 100, &segrow)); 11269566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bn, &seen)); 1127cd093f1dSJed Brown 1128cd093f1dSJed Brown /* Determine ci and cj */ 1129cd093f1dSJed Brown for (i = 0; i < am; i++) { 1130cd093f1dSJed Brown const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 11318e3a54c0SPierre Jolivet const PetscInt *acol = PetscSafePointerPlusOffset(aj, ai[i]); /* column indices of nonzero entries in this row */ 1132cd093f1dSJed Brown PetscInt packlen = 0, *PETSC_RESTRICT crow; 11338c78258cSHong Zhang 1134cd093f1dSJed Brown /* Pack segrow */ 1135cd093f1dSJed Brown for (j = 0; j < anzi; j++) { 1136cd093f1dSJed Brown PetscInt brow = acol[j], bjstart = bi[brow], bjend = bi[brow + 1], k; 1137cd093f1dSJed Brown for (k = bjstart; k < bjend; k++) { 11388c78258cSHong Zhang bcol = bj[k]; 1139cd093f1dSJed Brown if (!seen[bcol]) { /* new entry */ 1140cd093f1dSJed Brown PetscInt *PETSC_RESTRICT slot; 11419566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(segrow, 1, &slot)); 1142cd093f1dSJed Brown *slot = bcol; 1143cd093f1dSJed Brown seen[bcol] = 1; 1144cd093f1dSJed Brown packlen++; 1145cd093f1dSJed Brown } 1146cd093f1dSJed Brown } 1147cd093f1dSJed Brown } 11488c78258cSHong Zhang 11498c78258cSHong Zhang /* Check i-th diagonal entry */ 11508c78258cSHong Zhang if (C->force_diagonals && !seen[i]) { 11518c78258cSHong Zhang PetscInt *PETSC_RESTRICT slot; 11529566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(segrow, 1, &slot)); 11538c78258cSHong Zhang *slot = i; 11548c78258cSHong Zhang seen[i] = 1; 11558c78258cSHong Zhang packlen++; 11568c78258cSHong Zhang } 11578c78258cSHong Zhang 11589566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(seg, packlen, &crow)); 11599566063dSJacob Faibussowitsch PetscCall(PetscSegBufferExtractTo(segrow, crow)); 11609566063dSJacob Faibussowitsch PetscCall(PetscSortInt(packlen, crow)); 1161cd093f1dSJed Brown ci[i + 1] = ci[i] + packlen; 1162cd093f1dSJed Brown for (j = 0; j < packlen; j++) seen[crow[j]] = 0; 1163cd093f1dSJed Brown } 11649566063dSJacob Faibussowitsch PetscCall(PetscSegBufferDestroy(&segrow)); 11659566063dSJacob Faibussowitsch PetscCall(PetscFree(seen)); 1166cd093f1dSJed Brown 1167cd093f1dSJed Brown /* Column indices are in the segmented buffer */ 11689566063dSJacob Faibussowitsch PetscCall(PetscSegBufferExtractAlloc(seg, &cj)); 11699566063dSJacob Faibussowitsch PetscCall(PetscSegBufferDestroy(&seg)); 1170cd093f1dSJed Brown 1171cd093f1dSJed Brown /* put together the new symbolic matrix */ 11729566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 11739566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 1174cd093f1dSJed Brown 1175cd093f1dSJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 1176cd093f1dSJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 1177f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 1178cd093f1dSJed Brown c->free_a = PETSC_TRUE; 1179cd093f1dSJed Brown c->free_ij = PETSC_TRUE; 1180cd093f1dSJed Brown c->nonew = 0; 1181cd093f1dSJed Brown 11824222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 1183cd093f1dSJed Brown 1184cd093f1dSJed Brown /* set MatInfo */ 11852a09556fSStefano Zampini afill = (PetscReal)ci[am] / PetscMax(ai[am] + bi[bm], 1) + 1.e-5; 1186cd093f1dSJed Brown if (afill < 1.0) afill = 1.0; 11874222ddf1SHong Zhang C->info.mallocs = ndouble; 11884222ddf1SHong Zhang C->info.fill_ratio_given = fill; 11894222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1190cd093f1dSJed Brown 1191cd093f1dSJed Brown #if defined(PETSC_USE_INFO) 1192cd093f1dSJed Brown if (ci[am]) { 11939566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 11949566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1195cd093f1dSJed Brown } else { 11969566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1197cd093f1dSJed Brown } 1198cd093f1dSJed Brown #endif 11993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1200cd093f1dSJed Brown } 1201cd093f1dSJed Brown 120266976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_SeqAIJ_MatMatMultTrans(void *data) 1203d71ae5a4SJacob Faibussowitsch { 12046718818eSStefano Zampini Mat_MatMatTransMult *abt = (Mat_MatMatTransMult *)data; 12052128a86cSHong Zhang 12062128a86cSHong Zhang PetscFunctionBegin; 12079566063dSJacob Faibussowitsch PetscCall(MatTransposeColoringDestroy(&abt->matcoloring)); 12089566063dSJacob Faibussowitsch PetscCall(MatDestroy(&abt->Bt_den)); 12099566063dSJacob Faibussowitsch PetscCall(MatDestroy(&abt->ABt_den)); 12109566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 12113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12122128a86cSHong Zhang } 12132128a86cSHong Zhang 1214d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C) 1215d71ae5a4SJacob Faibussowitsch { 121681d82fe4SHong Zhang Mat Bt; 121740192850SHong Zhang Mat_MatMatTransMult *abt; 12184222ddf1SHong Zhang Mat_Product *product = C->product; 12196718818eSStefano Zampini char *alg; 1220d2853540SHong Zhang 122181d82fe4SHong Zhang PetscFunctionBegin; 122228b400f6SJacob Faibussowitsch PetscCheck(product, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 122328b400f6SJacob Faibussowitsch PetscCheck(!product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 12246718818eSStefano Zampini 122581d82fe4SHong Zhang /* create symbolic Bt */ 12267fb60732SBarry Smith PetscCall(MatTransposeSymbolic(B, &Bt)); 12279566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(Bt, PetscAbs(A->cmap->bs), PetscAbs(B->cmap->bs))); 12289566063dSJacob Faibussowitsch PetscCall(MatSetType(Bt, ((PetscObject)A)->type_name)); 122981d82fe4SHong Zhang 123081d82fe4SHong Zhang /* get symbolic C=A*Bt */ 12319566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(product->alg, &alg)); 12329566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "sorted")); /* set algorithm for C = A*Bt */ 12339566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(A, Bt, fill, C)); 12349566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, alg)); /* resume original algorithm for ABt product */ 12359566063dSJacob Faibussowitsch PetscCall(PetscFree(alg)); 123681d82fe4SHong Zhang 1237a5b23f4aSJose E. Roman /* create a supporting struct for reuse intermediate dense matrices with matcoloring */ 12389566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 12392128a86cSHong Zhang 12406718818eSStefano Zampini product->data = abt; 12416718818eSStefano Zampini product->destroy = MatDestroy_SeqAIJ_MatMatMultTrans; 12426718818eSStefano Zampini 12434222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ; 12442128a86cSHong Zhang 12454222ddf1SHong Zhang abt->usecoloring = PETSC_FALSE; 12469566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "color", &abt->usecoloring)); 124740192850SHong Zhang if (abt->usecoloring) { 1248b9af6bddSHong Zhang /* Create MatTransposeColoring from symbolic C=A*B^T */ 1249b9af6bddSHong Zhang MatTransposeColoring matcoloring; 1250335efc43SPeter Brune MatColoring coloring; 12512128a86cSHong Zhang ISColoring iscoloring; 12522128a86cSHong Zhang Mat Bt_dense, C_dense; 1253e8354b3eSHong Zhang 12544222ddf1SHong Zhang /* inode causes memory problem */ 12559566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_USE_INODES, PETSC_FALSE)); 12564222ddf1SHong Zhang 12579566063dSJacob Faibussowitsch PetscCall(MatColoringCreate(C, &coloring)); 12589566063dSJacob Faibussowitsch PetscCall(MatColoringSetDistance(coloring, 2)); 12599566063dSJacob Faibussowitsch PetscCall(MatColoringSetType(coloring, MATCOLORINGSL)); 12609566063dSJacob Faibussowitsch PetscCall(MatColoringSetFromOptions(coloring)); 12619566063dSJacob Faibussowitsch PetscCall(MatColoringApply(coloring, &iscoloring)); 12629566063dSJacob Faibussowitsch PetscCall(MatColoringDestroy(&coloring)); 12639566063dSJacob Faibussowitsch PetscCall(MatTransposeColoringCreate(C, iscoloring, &matcoloring)); 12642205254eSKarl Rupp 126540192850SHong Zhang abt->matcoloring = matcoloring; 12662205254eSKarl Rupp 12679566063dSJacob Faibussowitsch PetscCall(ISColoringDestroy(&iscoloring)); 12682128a86cSHong Zhang 12692128a86cSHong Zhang /* Create Bt_dense and C_dense = A*Bt_dense */ 12709566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &Bt_dense)); 12719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Bt_dense, A->cmap->n, matcoloring->ncolors, A->cmap->n, matcoloring->ncolors)); 12729566063dSJacob Faibussowitsch PetscCall(MatSetType(Bt_dense, MATSEQDENSE)); 12739566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(Bt_dense, NULL)); 12742205254eSKarl Rupp 12752128a86cSHong Zhang Bt_dense->assembled = PETSC_TRUE; 127640192850SHong Zhang abt->Bt_den = Bt_dense; 12772128a86cSHong Zhang 12789566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &C_dense)); 12799566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C_dense, A->rmap->n, matcoloring->ncolors, A->rmap->n, matcoloring->ncolors)); 12809566063dSJacob Faibussowitsch PetscCall(MatSetType(C_dense, MATSEQDENSE)); 12819566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(C_dense, NULL)); 12822205254eSKarl Rupp 12832128a86cSHong Zhang Bt_dense->assembled = PETSC_TRUE; 128440192850SHong Zhang abt->ABt_den = C_dense; 1285f94ccd6cSHong Zhang 1286f94ccd6cSHong Zhang #if defined(PETSC_USE_INFO) 12871ce71dffSSatish Balay { 12884222ddf1SHong Zhang Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; 12899371c9d4SSatish Balay PetscCall(PetscInfo(C, "Use coloring of C=A*B^T; B^T: %" PetscInt_FMT " %" PetscInt_FMT ", Bt_dense: %" PetscInt_FMT ",%" PetscInt_FMT "; Cnz %" PetscInt_FMT " / (cm*ncolors %" PetscInt_FMT ") = %g\n", B->cmap->n, B->rmap->n, Bt_dense->rmap->n, 1290f4f49eeaSPierre Jolivet Bt_dense->cmap->n, c->nz, A->rmap->n * matcoloring->ncolors, (double)(((PetscReal)c->nz) / ((PetscReal)(A->rmap->n * matcoloring->ncolors))))); 12911ce71dffSSatish Balay } 1292f94ccd6cSHong Zhang #endif 12932128a86cSHong Zhang } 1294e99be685SHong Zhang /* clean up */ 12959566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 12963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12975df89d91SHong Zhang } 12985df89d91SHong Zhang 1299d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C) 1300d71ae5a4SJacob Faibussowitsch { 13015df89d91SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c = (Mat_SeqAIJ *)C->data; 1302e2cac8caSJed Brown PetscInt *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, anzi, bnzj, nexta, nextb, *acol, *bcol, brow; 130381d82fe4SHong Zhang PetscInt cm = C->rmap->n, *ci = c->i, *cj = c->j, i, j, cnzi, *ccol; 13045df89d91SHong Zhang PetscLogDouble flops = 0.0; 1305aa1aec99SHong Zhang MatScalar *aa = a->a, *aval, *ba = b->a, *bval, *ca, *cval; 13066718818eSStefano Zampini Mat_MatMatTransMult *abt; 13076718818eSStefano Zampini Mat_Product *product = C->product; 13085df89d91SHong Zhang 13095df89d91SHong Zhang PetscFunctionBegin; 131028b400f6SJacob Faibussowitsch PetscCheck(product, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 13116718818eSStefano Zampini abt = (Mat_MatMatTransMult *)product->data; 131228b400f6SJacob Faibussowitsch PetscCheck(abt, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 131358ed3ceaSHong Zhang /* clear old values in C */ 131458ed3ceaSHong Zhang if (!c->a) { 13159566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[cm] + 1, &ca)); 131658ed3ceaSHong Zhang c->a = ca; 131758ed3ceaSHong Zhang c->free_a = PETSC_TRUE; 131858ed3ceaSHong Zhang } else { 131958ed3ceaSHong Zhang ca = c->a; 13209566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm] + 1)); 132158ed3ceaSHong Zhang } 132258ed3ceaSHong Zhang 132340192850SHong Zhang if (abt->usecoloring) { 132440192850SHong Zhang MatTransposeColoring matcoloring = abt->matcoloring; 132540192850SHong Zhang Mat Bt_dense, C_dense = abt->ABt_den; 1326c8db22f6SHong Zhang 1327b9af6bddSHong Zhang /* Get Bt_dense by Apply MatTransposeColoring to B */ 132840192850SHong Zhang Bt_dense = abt->Bt_den; 13299566063dSJacob Faibussowitsch PetscCall(MatTransColoringApplySpToDen(matcoloring, B, Bt_dense)); 1330c8db22f6SHong Zhang 1331c8db22f6SHong Zhang /* C_dense = A*Bt_dense */ 13329566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_SeqAIJ_SeqDense(A, Bt_dense, C_dense)); 1333c8db22f6SHong Zhang 13342128a86cSHong Zhang /* Recover C from C_dense */ 13359566063dSJacob Faibussowitsch PetscCall(MatTransColoringApplyDenToSp(matcoloring, C_dense, C)); 13363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1337c8db22f6SHong Zhang } 1338c8db22f6SHong Zhang 13391fa1209cSHong Zhang for (i = 0; i < cm; i++) { 134081d82fe4SHong Zhang anzi = ai[i + 1] - ai[i]; 13418e3a54c0SPierre Jolivet acol = PetscSafePointerPlusOffset(aj, ai[i]); 13428e3a54c0SPierre Jolivet aval = PetscSafePointerPlusOffset(aa, ai[i]); 13431fa1209cSHong Zhang cnzi = ci[i + 1] - ci[i]; 13448e3a54c0SPierre Jolivet ccol = PetscSafePointerPlusOffset(cj, ci[i]); 13456973769bSHong Zhang cval = ca + ci[i]; 13461fa1209cSHong Zhang for (j = 0; j < cnzi; j++) { 134781d82fe4SHong Zhang brow = ccol[j]; 134881d82fe4SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 134981d82fe4SHong Zhang bcol = bj + bi[brow]; 13506973769bSHong Zhang bval = ba + bi[brow]; 13516973769bSHong Zhang 135281d82fe4SHong Zhang /* perform sparse inner-product c(i,j)=A[i,:]*B[j,:]^T */ 13539371c9d4SSatish Balay nexta = 0; 13549371c9d4SSatish Balay nextb = 0; 135581d82fe4SHong Zhang while (nexta < anzi && nextb < bnzj) { 13567b6d5e96SMark Adams while (nexta < anzi && acol[nexta] < bcol[nextb]) nexta++; 135781d82fe4SHong Zhang if (nexta == anzi) break; 13587b6d5e96SMark Adams while (nextb < bnzj && acol[nexta] > bcol[nextb]) nextb++; 135981d82fe4SHong Zhang if (nextb == bnzj) break; 136081d82fe4SHong Zhang if (acol[nexta] == bcol[nextb]) { 13616973769bSHong Zhang cval[j] += aval[nexta] * bval[nextb]; 13629371c9d4SSatish Balay nexta++; 13639371c9d4SSatish Balay nextb++; 136481d82fe4SHong Zhang flops += 2; 13651fa1209cSHong Zhang } 13661fa1209cSHong Zhang } 136781d82fe4SHong Zhang } 136881d82fe4SHong Zhang } 13699566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 13709566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 13719566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 13723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13735df89d91SHong Zhang } 13745df89d91SHong Zhang 1375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqAIJ_MatTransMatMult(void *data) 1376d71ae5a4SJacob Faibussowitsch { 13776718818eSStefano Zampini Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)data; 13786d373c3eSHong Zhang 13796d373c3eSHong Zhang PetscFunctionBegin; 13809566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->At)); 13811baa6e33SBarry Smith if (atb->destroy) PetscCall((*atb->destroy)(atb->data)); 13829566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13846d373c3eSHong Zhang } 13856d373c3eSHong Zhang 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C) 1387d71ae5a4SJacob Faibussowitsch { 1388089a957eSStefano Zampini Mat At = NULL; 13894222ddf1SHong Zhang Mat_Product *product = C->product; 1390089a957eSStefano Zampini PetscBool flg, def, square; 1391bc011b1eSHong Zhang 1392bc011b1eSHong Zhang PetscFunctionBegin; 1393089a957eSStefano Zampini MatCheckProduct(C, 4); 1394b94d7dedSBarry Smith square = (PetscBool)(A == B && A->symmetric == PETSC_BOOL3_TRUE); 13954222ddf1SHong Zhang /* outerproduct */ 13969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "outerproduct", &flg)); 13974222ddf1SHong Zhang if (flg) { 1398bc011b1eSHong Zhang /* create symbolic At */ 1399089a957eSStefano Zampini if (!square) { 14007fb60732SBarry Smith PetscCall(MatTransposeSymbolic(A, &At)); 14019566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(At, PetscAbs(A->cmap->bs), PetscAbs(B->cmap->bs))); 14029566063dSJacob Faibussowitsch PetscCall(MatSetType(At, ((PetscObject)A)->type_name)); 1403089a957eSStefano Zampini } 1404bc011b1eSHong Zhang /* get symbolic C=At*B */ 14059566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "sorted")); 14069566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At, B, fill, C)); 1407bc011b1eSHong Zhang 1408bc011b1eSHong Zhang /* clean up */ 140948a46eb9SPierre Jolivet if (!square) PetscCall(MatDestroy(&At)); 14106d373c3eSHong Zhang 14114222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ; /* outerproduct */ 14129566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "outerproduct")); 14133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14144222ddf1SHong Zhang } 14154222ddf1SHong Zhang 14164222ddf1SHong Zhang /* matmatmult */ 14179566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &def)); 14189566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 1419089a957eSStefano Zampini if (flg || def) { 14204222ddf1SHong Zhang Mat_MatTransMatMult *atb; 14214222ddf1SHong Zhang 142228b400f6SJacob Faibussowitsch PetscCheck(!product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 14239566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 142448a46eb9SPierre Jolivet if (!square) PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 14259566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "sorted")); 14269566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At, B, fill, C)); 14279566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "at*b")); 14286718818eSStefano Zampini product->data = atb; 14296718818eSStefano Zampini product->destroy = MatDestroy_SeqAIJ_MatTransMatMult; 14304222ddf1SHong Zhang atb->At = At; 14314222ddf1SHong Zhang 14324222ddf1SHong Zhang C->ops->mattransposemultnumeric = NULL; /* see MatProductNumeric_AtB_SeqAIJ_SeqAIJ */ 14333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14344222ddf1SHong Zhang } 14354222ddf1SHong Zhang 14364222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 1437bc011b1eSHong Zhang } 1438bc011b1eSHong Zhang 1439d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C) 1440d71ae5a4SJacob Faibussowitsch { 14410fbc74f4SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c = (Mat_SeqAIJ *)C->data; 1442d0f46423SBarry Smith PetscInt am = A->rmap->n, anzi, *ai = a->i, *aj = a->j, *bi = b->i, *bj, bnzi, nextb; 1443d0f46423SBarry Smith PetscInt cm = C->rmap->n, *ci = c->i, *cj = c->j, crow, *cjj, i, j, k; 1444d13dce4bSSatish Balay PetscLogDouble flops = 0.0; 1445aa1aec99SHong Zhang MatScalar *aa = a->a, *ba, *ca, *caj; 1446bc011b1eSHong Zhang 1447bc011b1eSHong Zhang PetscFunctionBegin; 1448aa1aec99SHong Zhang if (!c->a) { 14499566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[cm] + 1, &ca)); 14502205254eSKarl Rupp 1451aa1aec99SHong Zhang c->a = ca; 1452aa1aec99SHong Zhang c->free_a = PETSC_TRUE; 1453aa1aec99SHong Zhang } else { 1454aa1aec99SHong Zhang ca = c->a; 14559566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm])); 1456aa1aec99SHong Zhang } 1457bc011b1eSHong Zhang 1458bc011b1eSHong Zhang /* compute A^T*B using outer product (A^T)[:,i]*B[i,:] */ 1459bc011b1eSHong Zhang for (i = 0; i < am; i++) { 1460bc011b1eSHong Zhang bj = b->j + bi[i]; 1461bc011b1eSHong Zhang ba = b->a + bi[i]; 1462bc011b1eSHong Zhang bnzi = bi[i + 1] - bi[i]; 1463bc011b1eSHong Zhang anzi = ai[i + 1] - ai[i]; 1464bc011b1eSHong Zhang for (j = 0; j < anzi; j++) { 1465bc011b1eSHong Zhang nextb = 0; 14660fbc74f4SHong Zhang crow = *aj++; 1467bc011b1eSHong Zhang cjj = cj + ci[crow]; 1468bc011b1eSHong Zhang caj = ca + ci[crow]; 1469bc011b1eSHong Zhang /* perform sparse axpy operation. Note cjj includes bj. */ 1470bc011b1eSHong Zhang for (k = 0; nextb < bnzi; k++) { 14710fbc74f4SHong Zhang if (cjj[k] == *(bj + nextb)) { /* ccol == bcol */ 14720fbc74f4SHong Zhang caj[k] += (*aa) * (*(ba + nextb)); 1473bc011b1eSHong Zhang nextb++; 1474bc011b1eSHong Zhang } 1475bc011b1eSHong Zhang } 1476bc011b1eSHong Zhang flops += 2 * bnzi; 14770fbc74f4SHong Zhang aa++; 1478bc011b1eSHong Zhang } 1479bc011b1eSHong Zhang } 1480bc011b1eSHong Zhang 1481bc011b1eSHong Zhang /* Assemble the final matrix and clean up */ 14829566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 14839566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 14849566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 14853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1486bc011b1eSHong Zhang } 14879123193aSHong Zhang 1488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 1489d71ae5a4SJacob Faibussowitsch { 14909123193aSHong Zhang PetscFunctionBegin; 14919566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqDense_SeqDense(A, B, 0.0, C)); 14924222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqDense; 14933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14949123193aSHong Zhang } 14959123193aSHong Zhang 1496d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat A, Mat B, Mat C, const PetscBool add) 1497d71ae5a4SJacob Faibussowitsch { 1498f32d5d43SBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 14991ca9667aSStefano Zampini PetscScalar *c, r1, r2, r3, r4, *c1, *c2, *c3, *c4; 1500a4af7ca8SStefano Zampini const PetscScalar *aa, *b, *b1, *b2, *b3, *b4, *av; 1501daf57211SHong Zhang const PetscInt *aj; 150275f6d85dSStefano Zampini PetscInt cm = C->rmap->n, cn = B->cmap->n, bm, am = A->rmap->n; 150375f6d85dSStefano Zampini PetscInt clda; 150475f6d85dSStefano Zampini PetscInt am4, bm4, col, i, j, n; 15059123193aSHong Zhang 15069123193aSHong Zhang PetscFunctionBegin; 15073ba16761SJacob Faibussowitsch if (!cm || !cn) PetscFunctionReturn(PETSC_SUCCESS); 15089566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &av)); 150993aa15f2SStefano Zampini if (add) { 15109566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(C, &c)); 151193aa15f2SStefano Zampini } else { 15129566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &c)); 151393aa15f2SStefano Zampini } 15149566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 15159566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &bm)); 15169566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(C, &clda)); 151775f6d85dSStefano Zampini am4 = 4 * clda; 151875f6d85dSStefano Zampini bm4 = 4 * bm; 15195c0db29aSPierre Jolivet if (b) { 15209371c9d4SSatish Balay b1 = b; 15219371c9d4SSatish Balay b2 = b1 + bm; 15229371c9d4SSatish Balay b3 = b2 + bm; 15239371c9d4SSatish Balay b4 = b3 + bm; 15245c0db29aSPierre Jolivet } else b1 = b2 = b3 = b4 = NULL; 15259371c9d4SSatish Balay c1 = c; 15269371c9d4SSatish Balay c2 = c1 + clda; 15279371c9d4SSatish Balay c3 = c2 + clda; 15289371c9d4SSatish Balay c4 = c3 + clda; 15291ca9667aSStefano Zampini for (col = 0; col < (cn / 4) * 4; col += 4) { /* over columns of C */ 15301ca9667aSStefano Zampini for (i = 0; i < am; i++) { /* over rows of A in those columns */ 1531f32d5d43SBarry Smith r1 = r2 = r3 = r4 = 0.0; 1532f32d5d43SBarry Smith n = a->i[i + 1] - a->i[i]; 15338e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 15348e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 1535f32d5d43SBarry Smith for (j = 0; j < n; j++) { 15361ca9667aSStefano Zampini const PetscScalar aatmp = aa[j]; 15371ca9667aSStefano Zampini const PetscInt ajtmp = aj[j]; 1538730858b9SHong Zhang r1 += aatmp * b1[ajtmp]; 1539730858b9SHong Zhang r2 += aatmp * b2[ajtmp]; 1540730858b9SHong Zhang r3 += aatmp * b3[ajtmp]; 1541730858b9SHong Zhang r4 += aatmp * b4[ajtmp]; 15429123193aSHong Zhang } 154393aa15f2SStefano Zampini if (add) { 154487753ddeSHong Zhang c1[i] += r1; 154587753ddeSHong Zhang c2[i] += r2; 154687753ddeSHong Zhang c3[i] += r3; 154787753ddeSHong Zhang c4[i] += r4; 154893aa15f2SStefano Zampini } else { 154993aa15f2SStefano Zampini c1[i] = r1; 155093aa15f2SStefano Zampini c2[i] = r2; 155193aa15f2SStefano Zampini c3[i] = r3; 155293aa15f2SStefano Zampini c4[i] = r4; 155393aa15f2SStefano Zampini } 1554f32d5d43SBarry Smith } 15555c0db29aSPierre Jolivet if (b) { 15569371c9d4SSatish Balay b1 += bm4; 15579371c9d4SSatish Balay b2 += bm4; 15589371c9d4SSatish Balay b3 += bm4; 15599371c9d4SSatish Balay b4 += bm4; 15605c0db29aSPierre Jolivet } 15619371c9d4SSatish Balay c1 += am4; 15629371c9d4SSatish Balay c2 += am4; 15639371c9d4SSatish Balay c3 += am4; 15649371c9d4SSatish Balay c4 += am4; 1565f32d5d43SBarry Smith } 156693aa15f2SStefano Zampini /* process remaining columns */ 156793aa15f2SStefano Zampini if (col != cn) { 156893aa15f2SStefano Zampini PetscInt rc = cn - col; 156993aa15f2SStefano Zampini 157093aa15f2SStefano Zampini if (rc == 1) { 157193aa15f2SStefano Zampini for (i = 0; i < am; i++) { 1572f32d5d43SBarry Smith r1 = 0.0; 1573f32d5d43SBarry Smith n = a->i[i + 1] - a->i[i]; 15748e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 15758e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 157693aa15f2SStefano Zampini for (j = 0; j < n; j++) r1 += aa[j] * b1[aj[j]]; 157793aa15f2SStefano Zampini if (add) c1[i] += r1; 157893aa15f2SStefano Zampini else c1[i] = r1; 157993aa15f2SStefano Zampini } 158093aa15f2SStefano Zampini } else if (rc == 2) { 158193aa15f2SStefano Zampini for (i = 0; i < am; i++) { 158293aa15f2SStefano Zampini r1 = r2 = 0.0; 158393aa15f2SStefano Zampini n = a->i[i + 1] - a->i[i]; 15848e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 15858e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 1586f32d5d43SBarry Smith for (j = 0; j < n; j++) { 158793aa15f2SStefano Zampini const PetscScalar aatmp = aa[j]; 158893aa15f2SStefano Zampini const PetscInt ajtmp = aj[j]; 158993aa15f2SStefano Zampini r1 += aatmp * b1[ajtmp]; 159093aa15f2SStefano Zampini r2 += aatmp * b2[ajtmp]; 1591f32d5d43SBarry Smith } 159293aa15f2SStefano Zampini if (add) { 159387753ddeSHong Zhang c1[i] += r1; 159493aa15f2SStefano Zampini c2[i] += r2; 159593aa15f2SStefano Zampini } else { 159693aa15f2SStefano Zampini c1[i] = r1; 159793aa15f2SStefano Zampini c2[i] = r2; 1598f32d5d43SBarry Smith } 159993aa15f2SStefano Zampini } 160093aa15f2SStefano Zampini } else { 160193aa15f2SStefano Zampini for (i = 0; i < am; i++) { 160293aa15f2SStefano Zampini r1 = r2 = r3 = 0.0; 160393aa15f2SStefano Zampini n = a->i[i + 1] - a->i[i]; 16048e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 16058e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 160693aa15f2SStefano Zampini for (j = 0; j < n; j++) { 160793aa15f2SStefano Zampini const PetscScalar aatmp = aa[j]; 160893aa15f2SStefano Zampini const PetscInt ajtmp = aj[j]; 160993aa15f2SStefano Zampini r1 += aatmp * b1[ajtmp]; 161093aa15f2SStefano Zampini r2 += aatmp * b2[ajtmp]; 161193aa15f2SStefano Zampini r3 += aatmp * b3[ajtmp]; 161293aa15f2SStefano Zampini } 161393aa15f2SStefano Zampini if (add) { 161493aa15f2SStefano Zampini c1[i] += r1; 161593aa15f2SStefano Zampini c2[i] += r2; 161693aa15f2SStefano Zampini c3[i] += r3; 161793aa15f2SStefano Zampini } else { 161893aa15f2SStefano Zampini c1[i] = r1; 161993aa15f2SStefano Zampini c2[i] = r2; 162093aa15f2SStefano Zampini c3[i] = r3; 162193aa15f2SStefano Zampini } 162293aa15f2SStefano Zampini } 162393aa15f2SStefano Zampini } 1624f32d5d43SBarry Smith } 16259566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(cn * (2.0 * a->nz))); 162693aa15f2SStefano Zampini if (add) { 16279566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(C, &c)); 162893aa15f2SStefano Zampini } else { 16299566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &c)); 163093aa15f2SStefano Zampini } 16319566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 16329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &av)); 16333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1634f32d5d43SBarry Smith } 1635f32d5d43SBarry Smith 1636d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqDense(Mat A, Mat B, Mat C) 1637d71ae5a4SJacob Faibussowitsch { 1638f32d5d43SBarry Smith PetscFunctionBegin; 163908401ef6SPierre Jolivet PetscCheck(B->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number columns in A %" PetscInt_FMT " not equal rows in B %" PetscInt_FMT, A->cmap->n, B->rmap->n); 164008401ef6SPierre Jolivet PetscCheck(A->rmap->n == C->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number rows in C %" PetscInt_FMT " not equal rows in A %" PetscInt_FMT, C->rmap->n, A->rmap->n); 164108401ef6SPierre Jolivet PetscCheck(B->cmap->n == C->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number columns in B %" PetscInt_FMT " not equal columns in C %" PetscInt_FMT, B->cmap->n, C->cmap->n); 16424324174eSBarry Smith 16439566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(A, B, C, PETSC_FALSE)); 16443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16459123193aSHong Zhang } 1646b1683b59SHong Zhang 1647d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AB(Mat C) 1648d71ae5a4SJacob Faibussowitsch { 16494222ddf1SHong Zhang PetscFunctionBegin; 16504222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqDense; 16514222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 16523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16534222ddf1SHong Zhang } 16544222ddf1SHong Zhang 16556718818eSStefano Zampini PETSC_INTERN PetscErrorCode MatTMatTMultSymbolic_SeqAIJ_SeqDense(Mat, Mat, PetscReal, Mat); 16566718818eSStefano Zampini 1657d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(Mat C) 1658d71ae5a4SJacob Faibussowitsch { 16594222ddf1SHong Zhang PetscFunctionBegin; 16606718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense; 16614222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 16623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16636718818eSStefano Zampini } 16646718818eSStefano Zampini 1665d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(Mat C) 1666d71ae5a4SJacob Faibussowitsch { 16676718818eSStefano Zampini PetscFunctionBegin; 16686718818eSStefano Zampini C->ops->mattransposemultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense; 16696718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_ABt; 16703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16714222ddf1SHong Zhang } 16724222ddf1SHong Zhang 1673d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense(Mat C) 1674d71ae5a4SJacob Faibussowitsch { 16754222ddf1SHong Zhang Mat_Product *product = C->product; 16764222ddf1SHong Zhang 16774222ddf1SHong Zhang PetscFunctionBegin; 16784222ddf1SHong Zhang switch (product->type) { 1679d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 1680d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AB(C)); 1681d71ae5a4SJacob Faibussowitsch break; 1682d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 1683d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(C)); 1684d71ae5a4SJacob Faibussowitsch break; 1685d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 1686d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(C)); 1687d71ae5a4SJacob Faibussowitsch break; 1688d71ae5a4SJacob Faibussowitsch default: 1689d71ae5a4SJacob Faibussowitsch break; 16904222ddf1SHong Zhang } 16913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16924222ddf1SHong Zhang } 16932ef1f0ffSBarry Smith 1694d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(Mat C) 1695d71ae5a4SJacob Faibussowitsch { 16964222ddf1SHong Zhang Mat_Product *product = C->product; 16974222ddf1SHong Zhang Mat A = product->A; 16984222ddf1SHong Zhang PetscBool baij; 16994222ddf1SHong Zhang 17004222ddf1SHong Zhang PetscFunctionBegin; 17019566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQBAIJ, &baij)); 17024222ddf1SHong Zhang if (!baij) { /* A is seqsbaij */ 17034222ddf1SHong Zhang PetscBool sbaij; 17049566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQSBAIJ, &sbaij)); 170528b400f6SJacob Faibussowitsch PetscCheck(sbaij, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "Mat must be either seqbaij or seqsbaij format"); 17064222ddf1SHong Zhang 17074222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqSBAIJ_SeqDense; 17084222ddf1SHong Zhang } else { /* A is seqbaij */ 17094222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqBAIJ_SeqDense; 17104222ddf1SHong Zhang } 17114222ddf1SHong Zhang 17124222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 17133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17144222ddf1SHong Zhang } 17154222ddf1SHong Zhang 1716d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense(Mat C) 1717d71ae5a4SJacob Faibussowitsch { 17184222ddf1SHong Zhang Mat_Product *product = C->product; 17194222ddf1SHong Zhang 17204222ddf1SHong Zhang PetscFunctionBegin; 17216718818eSStefano Zampini MatCheckProduct(C, 1); 172228b400f6SJacob Faibussowitsch PetscCheck(product->A, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing A"); 1723b94d7dedSBarry Smith if (product->type == MATPRODUCT_AB || (product->type == MATPRODUCT_AtB && product->A->symmetric == PETSC_BOOL3_TRUE)) PetscCall(MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(C)); 17243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17254222ddf1SHong Zhang } 17266718818eSStefano Zampini 1727d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ_AB(Mat C) 1728d71ae5a4SJacob Faibussowitsch { 17294222ddf1SHong Zhang PetscFunctionBegin; 17304222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqAIJ; 17314222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 17323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17334222ddf1SHong Zhang } 17344222ddf1SHong Zhang 1735d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ(Mat C) 1736d71ae5a4SJacob Faibussowitsch { 17374222ddf1SHong Zhang Mat_Product *product = C->product; 17384222ddf1SHong Zhang 17394222ddf1SHong Zhang PetscFunctionBegin; 174048a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_SeqDense_SeqAIJ_AB(C)); 17413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17424222ddf1SHong Zhang } 17434222ddf1SHong Zhang 1744d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransColoringApplySpToDen_SeqAIJ(MatTransposeColoring coloring, Mat B, Mat Btdense) 1745d71ae5a4SJacob Faibussowitsch { 17462f5f1f90SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 17472f5f1f90SHong Zhang Mat_SeqDense *btdense = (Mat_SeqDense *)Btdense->data; 17482f5f1f90SHong Zhang PetscInt *bi = b->i, *bj = b->j; 17492f5f1f90SHong Zhang PetscInt m = Btdense->rmap->n, n = Btdense->cmap->n, j, k, l, col, anz, *btcol, brow, ncolumns; 17502f5f1f90SHong Zhang MatScalar *btval, *btval_den, *ba = b->a; 17512f5f1f90SHong Zhang PetscInt *columns = coloring->columns, *colorforcol = coloring->colorforcol, ncolors = coloring->ncolors; 1752c8db22f6SHong Zhang 1753c8db22f6SHong Zhang PetscFunctionBegin; 17542f5f1f90SHong Zhang btval_den = btdense->v; 17559566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(btval_den, m * n)); 17562f5f1f90SHong Zhang for (k = 0; k < ncolors; k++) { 17572f5f1f90SHong Zhang ncolumns = coloring->ncolumns[k]; 17582f5f1f90SHong Zhang for (l = 0; l < ncolumns; l++) { /* insert a row of B to a column of Btdense */ 1759d2853540SHong Zhang col = *(columns + colorforcol[k] + l); 17602f5f1f90SHong Zhang btcol = bj + bi[col]; 17612f5f1f90SHong Zhang btval = ba + bi[col]; 17622f5f1f90SHong Zhang anz = bi[col + 1] - bi[col]; 1763d2853540SHong Zhang for (j = 0; j < anz; j++) { 17642f5f1f90SHong Zhang brow = btcol[j]; 17652f5f1f90SHong Zhang btval_den[brow] = btval[j]; 1766c8db22f6SHong Zhang } 1767c8db22f6SHong Zhang } 17682f5f1f90SHong Zhang btval_den += m; 1769c8db22f6SHong Zhang } 17703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1771c8db22f6SHong Zhang } 1772c8db22f6SHong Zhang 1773d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransColoringApplyDenToSp_SeqAIJ(MatTransposeColoring matcoloring, Mat Cden, Mat Csp) 1774d71ae5a4SJacob Faibussowitsch { 1775b2d2b04fSHong Zhang Mat_SeqAIJ *csp = (Mat_SeqAIJ *)Csp->data; 17761683a169SBarry Smith const PetscScalar *ca_den, *ca_den_ptr; 17771683a169SBarry Smith PetscScalar *ca = csp->a; 1778f99a636bSHong Zhang PetscInt k, l, m = Cden->rmap->n, ncolors = matcoloring->ncolors; 1779e88777f2SHong Zhang PetscInt brows = matcoloring->brows, *den2sp = matcoloring->den2sp; 1780077f23c2SHong Zhang PetscInt nrows, *row, *idx; 1781077f23c2SHong Zhang PetscInt *rows = matcoloring->rows, *colorforrow = matcoloring->colorforrow; 17828972f759SHong Zhang 17838972f759SHong Zhang PetscFunctionBegin; 17849566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(Cden, &ca_den)); 1785f99a636bSHong Zhang 1786077f23c2SHong Zhang if (brows > 0) { 1787077f23c2SHong Zhang PetscInt *lstart, row_end, row_start; 1788980ae229SHong Zhang lstart = matcoloring->lstart; 17899566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(lstart, ncolors)); 1790eeb4fd02SHong Zhang 1791077f23c2SHong Zhang row_end = brows; 1792eeb4fd02SHong Zhang if (row_end > m) row_end = m; 1793077f23c2SHong Zhang for (row_start = 0; row_start < m; row_start += brows) { /* loop over row blocks of Csp */ 1794077f23c2SHong Zhang ca_den_ptr = ca_den; 1795980ae229SHong Zhang for (k = 0; k < ncolors; k++) { /* loop over colors (columns of Cden) */ 1796eeb4fd02SHong Zhang nrows = matcoloring->nrows[k]; 1797eeb4fd02SHong Zhang row = rows + colorforrow[k]; 1798eeb4fd02SHong Zhang idx = den2sp + colorforrow[k]; 1799eeb4fd02SHong Zhang for (l = lstart[k]; l < nrows; l++) { 1800eeb4fd02SHong Zhang if (row[l] >= row_end) { 1801eeb4fd02SHong Zhang lstart[k] = l; 1802eeb4fd02SHong Zhang break; 1803eeb4fd02SHong Zhang } else { 1804077f23c2SHong Zhang ca[idx[l]] = ca_den_ptr[row[l]]; 1805eeb4fd02SHong Zhang } 1806eeb4fd02SHong Zhang } 1807077f23c2SHong Zhang ca_den_ptr += m; 1808eeb4fd02SHong Zhang } 1809077f23c2SHong Zhang row_end += brows; 1810eeb4fd02SHong Zhang if (row_end > m) row_end = m; 1811eeb4fd02SHong Zhang } 1812077f23c2SHong Zhang } else { /* non-blocked impl: loop over columns of Csp - slow if Csp is large */ 1813077f23c2SHong Zhang ca_den_ptr = ca_den; 1814077f23c2SHong Zhang for (k = 0; k < ncolors; k++) { 1815077f23c2SHong Zhang nrows = matcoloring->nrows[k]; 1816077f23c2SHong Zhang row = rows + colorforrow[k]; 1817077f23c2SHong Zhang idx = den2sp + colorforrow[k]; 1818ad540459SPierre Jolivet for (l = 0; l < nrows; l++) ca[idx[l]] = ca_den_ptr[row[l]]; 1819077f23c2SHong Zhang ca_den_ptr += m; 1820077f23c2SHong Zhang } 1821f99a636bSHong Zhang } 1822f99a636bSHong Zhang 18239566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(Cden, &ca_den)); 1824f99a636bSHong Zhang #if defined(PETSC_USE_INFO) 1825077f23c2SHong Zhang if (matcoloring->brows > 0) { 18269566063dSJacob Faibussowitsch PetscCall(PetscInfo(Csp, "Loop over %" PetscInt_FMT " row blocks for den2sp\n", brows)); 1827e88777f2SHong Zhang } else { 18289566063dSJacob Faibussowitsch PetscCall(PetscInfo(Csp, "Loop over colors/columns of Cden, inefficient for large sparse matrix product \n")); 1829e88777f2SHong Zhang } 1830f99a636bSHong Zhang #endif 18313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18328972f759SHong Zhang } 18338972f759SHong Zhang 1834d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeColoringCreate_SeqAIJ(Mat mat, ISColoring iscoloring, MatTransposeColoring c) 1835d71ae5a4SJacob Faibussowitsch { 1836e88777f2SHong Zhang PetscInt i, n, nrows, Nbs, j, k, m, ncols, col, cm; 18371a83f524SJed Brown const PetscInt *is, *ci, *cj, *row_idx; 1838b28d80bdSHong Zhang PetscInt nis = iscoloring->n, *rowhit, bs = 1; 1839b1683b59SHong Zhang IS *isa; 1840b28d80bdSHong Zhang Mat_SeqAIJ *csp = (Mat_SeqAIJ *)mat->data; 1841e88777f2SHong Zhang PetscInt *colorforrow, *rows, *rows_i, *idxhit, *spidx, *den2sp, *den2sp_i; 1842e88777f2SHong Zhang PetscInt *colorforcol, *columns, *columns_i, brows; 1843e88777f2SHong Zhang PetscBool flg; 1844b1683b59SHong Zhang 1845b1683b59SHong Zhang PetscFunctionBegin; 18469566063dSJacob Faibussowitsch PetscCall(ISColoringGetIS(iscoloring, PETSC_USE_POINTER, PETSC_IGNORE, &isa)); 1847e99be685SHong Zhang 18487ecccc15SHong Zhang /* bs >1 is not being tested yet! */ 1849e88777f2SHong Zhang Nbs = mat->cmap->N / bs; 1850b1683b59SHong Zhang c->M = mat->rmap->N / bs; /* set total rows, columns and local rows */ 1851e88777f2SHong Zhang c->N = Nbs; 1852e88777f2SHong Zhang c->m = c->M; 1853b1683b59SHong Zhang c->rstart = 0; 1854e88777f2SHong Zhang c->brows = 100; 1855b1683b59SHong Zhang 1856b1683b59SHong Zhang c->ncolors = nis; 18579566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nis, &c->ncolumns, nis, &c->nrows, nis + 1, &colorforrow)); 18589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(csp->nz + 1, &rows)); 18599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(csp->nz + 1, &den2sp)); 1860e88777f2SHong Zhang 1861e88777f2SHong Zhang brows = c->brows; 18629566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, NULL, "-matden2sp_brows", &brows, &flg)); 1863e88777f2SHong Zhang if (flg) c->brows = brows; 186448a46eb9SPierre Jolivet if (brows > 0) PetscCall(PetscMalloc1(nis + 1, &c->lstart)); 18652205254eSKarl Rupp 1866d2853540SHong Zhang colorforrow[0] = 0; 1867d2853540SHong Zhang rows_i = rows; 1868f99a636bSHong Zhang den2sp_i = den2sp; 1869b1683b59SHong Zhang 18709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nis + 1, &colorforcol)); 18719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nbs + 1, &columns)); 18722205254eSKarl Rupp 1873d2853540SHong Zhang colorforcol[0] = 0; 1874d2853540SHong Zhang columns_i = columns; 1875d2853540SHong Zhang 1876077f23c2SHong Zhang /* get column-wise storage of mat */ 18779566063dSJacob Faibussowitsch PetscCall(MatGetColumnIJ_SeqAIJ_Color(mat, 0, PETSC_FALSE, PETSC_FALSE, &ncols, &ci, &cj, &spidx, NULL)); 1878b1683b59SHong Zhang 1879b28d80bdSHong Zhang cm = c->m; 18809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cm + 1, &rowhit)); 18819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cm + 1, &idxhit)); 1882f99a636bSHong Zhang for (i = 0; i < nis; i++) { /* loop over color */ 18839566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isa[i], &n)); 18849566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isa[i], &is)); 18852205254eSKarl Rupp 1886b1683b59SHong Zhang c->ncolumns[i] = n; 18871baa6e33SBarry Smith if (n) PetscCall(PetscArraycpy(columns_i, is, n)); 1888d2853540SHong Zhang colorforcol[i + 1] = colorforcol[i] + n; 1889d2853540SHong Zhang columns_i += n; 1890b1683b59SHong Zhang 1891b1683b59SHong Zhang /* fast, crude version requires O(N*N) work */ 18929566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rowhit, cm)); 1893e99be685SHong Zhang 1894b7caf3d6SHong Zhang for (j = 0; j < n; j++) { /* loop over columns*/ 1895b1683b59SHong Zhang col = is[j]; 1896d2853540SHong Zhang row_idx = cj + ci[col]; 1897b1683b59SHong Zhang m = ci[col + 1] - ci[col]; 1898b7caf3d6SHong Zhang for (k = 0; k < m; k++) { /* loop over columns marking them in rowhit */ 1899e99be685SHong Zhang idxhit[*row_idx] = spidx[ci[col] + k]; 1900d2853540SHong Zhang rowhit[*row_idx++] = col + 1; 1901b1683b59SHong Zhang } 1902b1683b59SHong Zhang } 1903b1683b59SHong Zhang /* count the number of hits */ 1904b1683b59SHong Zhang nrows = 0; 1905e8354b3eSHong Zhang for (j = 0; j < cm; j++) { 1906b1683b59SHong Zhang if (rowhit[j]) nrows++; 1907b1683b59SHong Zhang } 1908b1683b59SHong Zhang c->nrows[i] = nrows; 1909d2853540SHong Zhang colorforrow[i + 1] = colorforrow[i] + nrows; 1910d2853540SHong Zhang 1911b1683b59SHong Zhang nrows = 0; 1912b7caf3d6SHong Zhang for (j = 0; j < cm; j++) { /* loop over rows */ 1913b1683b59SHong Zhang if (rowhit[j]) { 1914d2853540SHong Zhang rows_i[nrows] = j; 191512b89a43SHong Zhang den2sp_i[nrows] = idxhit[j]; 1916b1683b59SHong Zhang nrows++; 1917b1683b59SHong Zhang } 1918b1683b59SHong Zhang } 1919e88777f2SHong Zhang den2sp_i += nrows; 1920077f23c2SHong Zhang 19219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isa[i], &is)); 1922f99a636bSHong Zhang rows_i += nrows; 1923b1683b59SHong Zhang } 19249566063dSJacob Faibussowitsch PetscCall(MatRestoreColumnIJ_SeqAIJ_Color(mat, 0, PETSC_FALSE, PETSC_FALSE, &ncols, &ci, &cj, &spidx, NULL)); 19259566063dSJacob Faibussowitsch PetscCall(PetscFree(rowhit)); 19269566063dSJacob Faibussowitsch PetscCall(ISColoringRestoreIS(iscoloring, PETSC_USE_POINTER, &isa)); 19272c71b3e2SJacob Faibussowitsch PetscCheck(csp->nz == colorforrow[nis], PETSC_COMM_SELF, PETSC_ERR_PLIB, "csp->nz %" PetscInt_FMT " != colorforrow[nis] %" PetscInt_FMT, csp->nz, colorforrow[nis]); 1928b28d80bdSHong Zhang 1929d2853540SHong Zhang c->colorforrow = colorforrow; 1930d2853540SHong Zhang c->rows = rows; 1931f99a636bSHong Zhang c->den2sp = den2sp; 1932d2853540SHong Zhang c->colorforcol = colorforcol; 1933d2853540SHong Zhang c->columns = columns; 19342205254eSKarl Rupp 19359566063dSJacob Faibussowitsch PetscCall(PetscFree(idxhit)); 19363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1937b1683b59SHong Zhang } 1938d013fc79Sandi selinger 1939d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_AtB_SeqAIJ_SeqAIJ(Mat C) 1940d71ae5a4SJacob Faibussowitsch { 19414222ddf1SHong Zhang Mat_Product *product = C->product; 19424222ddf1SHong Zhang Mat A = product->A, B = product->B; 19434222ddf1SHong Zhang 1944df97dc6dSFande Kong PetscFunctionBegin; 19454222ddf1SHong Zhang if (C->ops->mattransposemultnumeric) { 19464222ddf1SHong Zhang /* Alg: "outerproduct" */ 19479566063dSJacob Faibussowitsch PetscCall((*C->ops->mattransposemultnumeric)(A, B, C)); 19484222ddf1SHong Zhang } else { 19494222ddf1SHong Zhang /* Alg: "matmatmult" -- C = At*B */ 19506718818eSStefano Zampini Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)product->data; 19514222ddf1SHong Zhang 195228b400f6SJacob Faibussowitsch PetscCheck(atb, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 19531cdffd5eSHong Zhang if (atb->At) { 19541cdffd5eSHong Zhang /* At is computed in MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(); 19551cdffd5eSHong Zhang user may have called MatProductReplaceMats() to get this A=product->A */ 19561cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(A, atb->At)); 19577fb60732SBarry Smith PetscCall(MatTranspose(A, MAT_REUSE_MATRIX, &atb->At)); 19584222ddf1SHong Zhang } 19597fb60732SBarry Smith PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ(atb->At ? atb->At : A, B, C)); 19604222ddf1SHong Zhang } 19613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1962df97dc6dSFande Kong } 1963df97dc6dSFande Kong 1964d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_SeqAIJ_SeqAIJ(Mat C) 1965d71ae5a4SJacob Faibussowitsch { 19664222ddf1SHong Zhang Mat_Product *product = C->product; 19674222ddf1SHong Zhang Mat A = product->A, B = product->B; 19684222ddf1SHong Zhang PetscReal fill = product->fill; 1969d013fc79Sandi selinger 1970d013fc79Sandi selinger PetscFunctionBegin; 19719566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(A, B, fill, C)); 19722869b61bSandi selinger 19734222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB_SeqAIJ_SeqAIJ; 19743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19752869b61bSandi selinger } 1976d013fc79Sandi selinger 1977d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AB(Mat C) 1978d71ae5a4SJacob Faibussowitsch { 19794222ddf1SHong Zhang Mat_Product *product = C->product; 19804222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 19814222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 19824222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 19834222ddf1SHong Zhang const char *algTypes[7] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge"}; 19844222ddf1SHong Zhang PetscInt nalg = 7; 19854222ddf1SHong Zhang #else 19864222ddf1SHong Zhang const char *algTypes[8] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge", "hypre"}; 19874222ddf1SHong Zhang PetscInt nalg = 8; 19884222ddf1SHong Zhang #endif 19894222ddf1SHong Zhang 19904222ddf1SHong Zhang PetscFunctionBegin; 19914222ddf1SHong Zhang /* Set default algorithm */ 19929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 199348a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 1994d013fc79Sandi selinger 19954222ddf1SHong Zhang /* Get runtime option */ 19964222ddf1SHong Zhang if (product->api_user) { 1997d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 19989566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[0], &alg, &flg)); 1999d0609cedSBarry Smith PetscOptionsEnd(); 20004222ddf1SHong Zhang } else { 2001d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 20029566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AB", algTypes, nalg, algTypes[0], &alg, &flg)); 2003d0609cedSBarry Smith PetscOptionsEnd(); 2004d013fc79Sandi selinger } 200548a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 2006d013fc79Sandi selinger 20074222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 20084222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqAIJ; 20093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20104222ddf1SHong Zhang } 2011d013fc79Sandi selinger 2012d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AtB(Mat C) 2013d71ae5a4SJacob Faibussowitsch { 20144222ddf1SHong Zhang Mat_Product *product = C->product; 20154222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 20164222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 2017089a957eSStefano Zampini const char *algTypes[3] = {"default", "at*b", "outerproduct"}; 2018089a957eSStefano Zampini PetscInt nalg = 3; 2019d013fc79Sandi selinger 20204222ddf1SHong Zhang PetscFunctionBegin; 20214222ddf1SHong Zhang /* Get runtime option */ 20224222ddf1SHong Zhang if (product->api_user) { 2023d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 20249566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2025d0609cedSBarry Smith PetscOptionsEnd(); 20264222ddf1SHong Zhang } else { 2027d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 20289566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AtB", algTypes, nalg, algTypes[alg], &alg, &flg)); 2029d0609cedSBarry Smith PetscOptionsEnd(); 20304222ddf1SHong Zhang } 203148a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 2032d013fc79Sandi selinger 20334222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_SeqAIJ_SeqAIJ; 20343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20354222ddf1SHong Zhang } 20364222ddf1SHong Zhang 2037d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABt(Mat C) 2038d71ae5a4SJacob Faibussowitsch { 20394222ddf1SHong Zhang Mat_Product *product = C->product; 20404222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 20414222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20424222ddf1SHong Zhang const char *algTypes[2] = {"default", "color"}; 20434222ddf1SHong Zhang PetscInt nalg = 2; 20444222ddf1SHong Zhang 20454222ddf1SHong Zhang PetscFunctionBegin; 20464222ddf1SHong Zhang /* Set default algorithm */ 20479566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 20484222ddf1SHong Zhang if (!flg) { 20494222ddf1SHong Zhang alg = 1; 20509566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 20514222ddf1SHong Zhang } 20524222ddf1SHong Zhang 20534222ddf1SHong Zhang /* Get runtime option */ 20544222ddf1SHong Zhang if (product->api_user) { 2055d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 20569566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2057d0609cedSBarry Smith PetscOptionsEnd(); 20584222ddf1SHong Zhang } else { 2059d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 20609566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2061d0609cedSBarry Smith PetscOptionsEnd(); 20624222ddf1SHong Zhang } 206348a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 20644222ddf1SHong Zhang 20654222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ; 20664222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 20673ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20684222ddf1SHong Zhang } 20694222ddf1SHong Zhang 2070d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_PtAP(Mat C) 2071d71ae5a4SJacob Faibussowitsch { 20724222ddf1SHong Zhang Mat_Product *product = C->product; 20734222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20744222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm -- alg=1 should be default!!! */ 20754222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 20764222ddf1SHong Zhang const char *algTypes[2] = {"scalable", "rap"}; 20774222ddf1SHong Zhang PetscInt nalg = 2; 20784222ddf1SHong Zhang #else 20794222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "rap", "hypre"}; 20804222ddf1SHong Zhang PetscInt nalg = 3; 20814222ddf1SHong Zhang #endif 20824222ddf1SHong Zhang 20834222ddf1SHong Zhang PetscFunctionBegin; 20844222ddf1SHong Zhang /* Set default algorithm */ 20859566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 208648a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 20874222ddf1SHong Zhang 20884222ddf1SHong Zhang /* Get runtime option */ 20894222ddf1SHong Zhang if (product->api_user) { 2090d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 20919566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[0], &alg, &flg)); 2092d0609cedSBarry Smith PetscOptionsEnd(); 20934222ddf1SHong Zhang } else { 2094d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 20959566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_PtAP", algTypes, nalg, algTypes[0], &alg, &flg)); 2096d0609cedSBarry Smith PetscOptionsEnd(); 20974222ddf1SHong Zhang } 209848a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 20994222ddf1SHong Zhang 21004222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_SeqAIJ_SeqAIJ; 21013ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21024222ddf1SHong Zhang } 21034222ddf1SHong Zhang 2104d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_RARt(Mat C) 2105d71ae5a4SJacob Faibussowitsch { 21064222ddf1SHong Zhang Mat_Product *product = C->product; 21074222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 21084222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 21094222ddf1SHong Zhang const char *algTypes[3] = {"r*a*rt", "r*art", "coloring_rart"}; 21104222ddf1SHong Zhang PetscInt nalg = 3; 21114222ddf1SHong Zhang 21124222ddf1SHong Zhang PetscFunctionBegin; 21134222ddf1SHong Zhang /* Set default algorithm */ 21149566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 211548a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21164222ddf1SHong Zhang 21174222ddf1SHong Zhang /* Get runtime option */ 21184222ddf1SHong Zhang if (product->api_user) { 2119d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatRARt", "Mat"); 21209566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matrart_via", "Algorithmic approach", "MatRARt", algTypes, nalg, algTypes[0], &alg, &flg)); 2121d0609cedSBarry Smith PetscOptionsEnd(); 21224222ddf1SHong Zhang } else { 2123d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_RARt", "Mat"); 21249566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_RARt", algTypes, nalg, algTypes[0], &alg, &flg)); 2125d0609cedSBarry Smith PetscOptionsEnd(); 21264222ddf1SHong Zhang } 212748a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21284222ddf1SHong Zhang 21294222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_SeqAIJ_SeqAIJ; 21303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21314222ddf1SHong Zhang } 21324222ddf1SHong Zhang 21334222ddf1SHong Zhang /* ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm */ 2134d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABC(Mat C) 2135d71ae5a4SJacob Faibussowitsch { 21364222ddf1SHong Zhang Mat_Product *product = C->product; 21374222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 21384222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 21394222ddf1SHong Zhang const char *algTypes[7] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge"}; 21404222ddf1SHong Zhang PetscInt nalg = 7; 21414222ddf1SHong Zhang 21424222ddf1SHong Zhang PetscFunctionBegin; 21434222ddf1SHong Zhang /* Set default algorithm */ 21449566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 214548a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21464222ddf1SHong Zhang 21474222ddf1SHong Zhang /* Get runtime option */ 21484222ddf1SHong Zhang if (product->api_user) { 2149d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 21509566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2151d0609cedSBarry Smith PetscOptionsEnd(); 21524222ddf1SHong Zhang } else { 2153d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 21549566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2155d0609cedSBarry Smith PetscOptionsEnd(); 21564222ddf1SHong Zhang } 215748a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21584222ddf1SHong Zhang 21594222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_SeqAIJ_SeqAIJ_SeqAIJ; 21604222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 21613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21624222ddf1SHong Zhang } 21634222ddf1SHong Zhang 2164d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_SeqAIJ(Mat C) 2165d71ae5a4SJacob Faibussowitsch { 21664222ddf1SHong Zhang Mat_Product *product = C->product; 21674222ddf1SHong Zhang 21684222ddf1SHong Zhang PetscFunctionBegin; 21694222ddf1SHong Zhang switch (product->type) { 2170d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2171d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_AB(C)); 2172d71ae5a4SJacob Faibussowitsch break; 2173d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2174d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_AtB(C)); 2175d71ae5a4SJacob Faibussowitsch break; 2176d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2177d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_ABt(C)); 2178d71ae5a4SJacob Faibussowitsch break; 2179d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 2180d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_PtAP(C)); 2181d71ae5a4SJacob Faibussowitsch break; 2182d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt: 2183d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_RARt(C)); 2184d71ae5a4SJacob Faibussowitsch break; 2185d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 2186d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_ABC(C)); 2187d71ae5a4SJacob Faibussowitsch break; 2188d71ae5a4SJacob Faibussowitsch default: 2189d71ae5a4SJacob Faibussowitsch break; 21904222ddf1SHong Zhang } 21913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2192d013fc79Sandi selinger } 2193