1be1d678aSKris Buschelman 2d50806bdSBarry Smith /* 32499ec78SHong Zhang Defines matrix-matrix product routines for pairs of SeqAIJ matrices 4d50806bdSBarry Smith C = A * B 5d50806bdSBarry Smith */ 6d50806bdSBarry Smith 7c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 8c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 9c6db04a5SJed Brown #include <petscbt.h> 10af0996ceSBarry Smith #include <petsc/private/isimpl.h> 1107475bc1SBarry Smith #include <../src/mat/impls/dense/seq/dense.h> 127bab7c10SHong Zhang 13df97dc6dSFande Kong PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C) 14df97dc6dSFande Kong { 15df97dc6dSFande Kong PetscFunctionBegin; 16df97dc6dSFande Kong if (C->ops->matmultnumeric) { 1708401ef6SPierre Jolivet PetscCheck(C->ops->matmultnumeric != MatMatMultNumeric_SeqAIJ_SeqAIJ,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Recursive call"); 189566063dSJacob Faibussowitsch PetscCall((*C->ops->matmultnumeric)(A,B,C)); 19df97dc6dSFande Kong } else { 209566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(A,B,C)); 21df97dc6dSFande Kong } 22df97dc6dSFande Kong PetscFunctionReturn(0); 23df97dc6dSFande Kong } 24df97dc6dSFande Kong 254222ddf1SHong Zhang /* Modified from MatCreateSeqAIJWithArrays() */ 26e4e71118SStefano Zampini PETSC_INTERN PetscErrorCode MatSetSeqAIJWithArrays_private(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt i[],PetscInt j[],PetscScalar a[],MatType mtype,Mat mat) 27df97dc6dSFande Kong { 284222ddf1SHong Zhang PetscInt ii; 294222ddf1SHong Zhang Mat_SeqAIJ *aij; 30cbc6b225SStefano Zampini PetscBool isseqaij, osingle, ofree_a, ofree_ij; 315c66b693SKris Buschelman 325c66b693SKris Buschelman PetscFunctionBegin; 33aed4548fSBarry Smith PetscCheck(m <= 0 || !i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 349566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,m,n,m,n)); 354222ddf1SHong Zhang 36e4e71118SStefano Zampini if (!mtype) { 379566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)mat,MATSEQAIJ,&isseqaij)); 389566063dSJacob Faibussowitsch if (!isseqaij) PetscCall(MatSetType(mat,MATSEQAIJ)); 39e4e71118SStefano Zampini } else { 409566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,mtype)); 41e4e71118SStefano Zampini } 42cbc6b225SStefano Zampini 434222ddf1SHong Zhang aij = (Mat_SeqAIJ*)(mat)->data; 44cbc6b225SStefano Zampini osingle = aij->singlemalloc; 45cbc6b225SStefano Zampini ofree_a = aij->free_a; 46cbc6b225SStefano Zampini ofree_ij = aij->free_ij; 47cbc6b225SStefano Zampini /* changes the free flags */ 489566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(mat,MAT_SKIP_ALLOCATION,NULL)); 49cbc6b225SStefano Zampini 509566063dSJacob Faibussowitsch PetscCall(PetscFree(aij->ilen)); 519566063dSJacob Faibussowitsch PetscCall(PetscFree(aij->imax)); 529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&aij->imax)); 539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&aij->ilen)); 54cbc6b225SStefano Zampini for (ii=0,aij->nonzerorowcnt=0,aij->rmax = 0; ii<m; ii++) { 55cbc6b225SStefano Zampini const PetscInt rnz = i[ii+1] - i[ii]; 56cbc6b225SStefano Zampini aij->nonzerorowcnt += !!rnz; 57cbc6b225SStefano Zampini aij->rmax = PetscMax(aij->rmax,rnz); 58cbc6b225SStefano Zampini aij->ilen[ii] = aij->imax[ii] = i[ii+1] - i[ii]; 59cbc6b225SStefano Zampini } 60cbc6b225SStefano Zampini aij->maxnz = i[m]; 61cbc6b225SStefano Zampini aij->nz = i[m]; 624222ddf1SHong Zhang 63cbc6b225SStefano Zampini if (osingle) { 649566063dSJacob Faibussowitsch PetscCall(PetscFree3(aij->a,aij->j,aij->i)); 65cbc6b225SStefano Zampini } else { 669566063dSJacob Faibussowitsch if (ofree_a) PetscCall(PetscFree(aij->a)); 679566063dSJacob Faibussowitsch if (ofree_ij) PetscCall(PetscFree(aij->j)); 689566063dSJacob Faibussowitsch if (ofree_ij) PetscCall(PetscFree(aij->i)); 69cbc6b225SStefano Zampini } 704222ddf1SHong Zhang aij->i = i; 714222ddf1SHong Zhang aij->j = j; 724222ddf1SHong Zhang aij->a = a; 734222ddf1SHong Zhang aij->nonew = -1; /* this indicates that inserting a new value in the matrix that generates a new nonzero is an error */ 74cbc6b225SStefano Zampini /* default to not retain ownership */ 75cbc6b225SStefano Zampini aij->singlemalloc = PETSC_FALSE; 764222ddf1SHong Zhang aij->free_a = PETSC_FALSE; 774222ddf1SHong Zhang aij->free_ij = PETSC_FALSE; 789566063dSJacob Faibussowitsch PetscCall(MatCheckCompressedRow(mat,aij->nonzerorowcnt,&aij->compressedrow,aij->i,m,0.6)); 795c66b693SKris Buschelman PetscFunctionReturn(0); 805c66b693SKris Buschelman } 811c24bd37SHong Zhang 824222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat C) 834222ddf1SHong Zhang { 844222ddf1SHong Zhang Mat_Product *product = C->product; 854222ddf1SHong Zhang MatProductAlgorithm alg; 864222ddf1SHong Zhang PetscBool flg; 874222ddf1SHong Zhang 884222ddf1SHong Zhang PetscFunctionBegin; 894222ddf1SHong Zhang if (product) { 904222ddf1SHong Zhang alg = product->alg; 914222ddf1SHong Zhang } else { 924222ddf1SHong Zhang alg = "sorted"; 934222ddf1SHong Zhang } 944222ddf1SHong Zhang /* sorted */ 959566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"sorted",&flg)); 964222ddf1SHong Zhang if (flg) { 979566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(A,B,fill,C)); 984222ddf1SHong Zhang PetscFunctionReturn(0); 994222ddf1SHong Zhang } 1004222ddf1SHong Zhang 1014222ddf1SHong Zhang /* scalable */ 1029566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"scalable",&flg)); 1034222ddf1SHong Zhang if (flg) { 1049566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(A,B,fill,C)); 1054222ddf1SHong Zhang PetscFunctionReturn(0); 1064222ddf1SHong Zhang } 1074222ddf1SHong Zhang 1084222ddf1SHong Zhang /* scalable_fast */ 1099566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"scalable_fast",&flg)); 1104222ddf1SHong Zhang if (flg) { 1119566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(A,B,fill,C)); 1124222ddf1SHong Zhang PetscFunctionReturn(0); 1134222ddf1SHong Zhang } 1144222ddf1SHong Zhang 1154222ddf1SHong Zhang /* heap */ 1169566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"heap",&flg)); 1174222ddf1SHong Zhang if (flg) { 1189566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(A,B,fill,C)); 1194222ddf1SHong Zhang PetscFunctionReturn(0); 1204222ddf1SHong Zhang } 1214222ddf1SHong Zhang 1224222ddf1SHong Zhang /* btheap */ 1239566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"btheap",&flg)); 1244222ddf1SHong Zhang if (flg) { 1259566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(A,B,fill,C)); 1264222ddf1SHong Zhang PetscFunctionReturn(0); 1274222ddf1SHong Zhang } 1284222ddf1SHong Zhang 1294222ddf1SHong Zhang /* llcondensed */ 1309566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"llcondensed",&flg)); 1314222ddf1SHong Zhang if (flg) { 1329566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(A,B,fill,C)); 1334222ddf1SHong Zhang PetscFunctionReturn(0); 1344222ddf1SHong Zhang } 1354222ddf1SHong Zhang 1364222ddf1SHong Zhang /* rowmerge */ 1379566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"rowmerge",&flg)); 1384222ddf1SHong Zhang if (flg) { 1399566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(A,B,fill,C)); 1404222ddf1SHong Zhang PetscFunctionReturn(0); 1414222ddf1SHong Zhang } 1424222ddf1SHong Zhang 1434222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 1449566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg,"hypre",&flg)); 1454222ddf1SHong Zhang if (flg) { 1469566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A,B,fill,C)); 1474222ddf1SHong Zhang PetscFunctionReturn(0); 1484222ddf1SHong Zhang } 1494222ddf1SHong Zhang #endif 1504222ddf1SHong Zhang 1514222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Mat Product Algorithm is not supported"); 1524222ddf1SHong Zhang } 1534222ddf1SHong Zhang 1544222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(Mat A,Mat B,PetscReal fill,Mat C) 155b561aa9dSHong Zhang { 156b561aa9dSHong Zhang Mat_SeqAIJ *a =(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 157971236abSHong Zhang PetscInt *ai=a->i,*bi=b->i,*ci,*cj; 158c1ba5575SJed Brown PetscInt am =A->rmap->N,bn=B->cmap->N,bm=B->rmap->N; 159b561aa9dSHong Zhang PetscReal afill; 160eca6b86aSHong Zhang PetscInt i,j,anzi,brow,bnzj,cnzi,*bj,*aj,*lnk,ndouble=0,Crmax; 161eca6b86aSHong Zhang PetscTable ta; 162fb908031SHong Zhang PetscBT lnkbt; 1630298fd71SBarry Smith PetscFreeSpaceList free_space=NULL,current_space=NULL; 164b561aa9dSHong Zhang 165b561aa9dSHong Zhang PetscFunctionBegin; 166bd958071SHong Zhang /* Get ci and cj */ 167bd958071SHong Zhang /*---------------*/ 168fb908031SHong Zhang /* Allocate ci array, arrays for fill computation and */ 169fb908031SHong Zhang /* free space for accumulating nonzero column info */ 1709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am+2,&ci)); 171fb908031SHong Zhang ci[0] = 0; 172fb908031SHong Zhang 173fb908031SHong Zhang /* create and initialize a linked list */ 1749566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(bn,bn,&ta)); 175c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b,bm,ta); 1769566063dSJacob Faibussowitsch PetscCall(PetscTableGetCount(ta,&Crmax)); 1779566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&ta)); 178eca6b86aSHong Zhang 1799566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax,bn,&lnk,&lnkbt)); 180fb908031SHong Zhang 181fb908031SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 1829566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space)); 1832205254eSKarl Rupp 184fb908031SHong Zhang current_space = free_space; 185fb908031SHong Zhang 186fb908031SHong Zhang /* Determine ci and cj */ 187fb908031SHong Zhang for (i=0; i<am; i++) { 188fb908031SHong Zhang anzi = ai[i+1] - ai[i]; 189fb908031SHong Zhang aj = a->j + ai[i]; 190fb908031SHong Zhang for (j=0; j<anzi; j++) { 191fb908031SHong Zhang brow = aj[j]; 192fb908031SHong Zhang bnzj = bi[brow+1] - bi[brow]; 193fb908031SHong Zhang bj = b->j + bi[brow]; 194fb908031SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 1959566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(bnzj,bj,lnk,lnkbt)); 196fb908031SHong Zhang } 1978c78258cSHong Zhang /* add possible missing diagonal entry */ 1988c78258cSHong Zhang if (C->force_diagonals) { 1999566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(1,&i,lnk,lnkbt)); 2008c78258cSHong Zhang } 201fb908031SHong Zhang cnzi = lnk[0]; 202fb908031SHong Zhang 203fb908031SHong Zhang /* If free space is not available, make more free space */ 204fb908031SHong Zhang /* Double the amount of total space in the list */ 205fb908031SHong Zhang if (current_space->local_remaining<cnzi) { 2069566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi,current_space->total_array_size),¤t_space)); 207fb908031SHong Zhang ndouble++; 208fb908031SHong Zhang } 209fb908031SHong Zhang 210fb908031SHong Zhang /* Copy data into free space, then initialize lnk */ 2119566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(bn,cnzi,current_space->array,lnk,lnkbt)); 2122205254eSKarl Rupp 213fb908031SHong Zhang current_space->array += cnzi; 214fb908031SHong Zhang current_space->local_used += cnzi; 215fb908031SHong Zhang current_space->local_remaining -= cnzi; 2162205254eSKarl Rupp 217fb908031SHong Zhang ci[i+1] = ci[i] + cnzi; 218fb908031SHong Zhang } 219fb908031SHong Zhang 220fb908031SHong Zhang /* Column indices are in the list of free space */ 221fb908031SHong Zhang /* Allocate space for cj, initialize cj, and */ 222fb908031SHong Zhang /* destroy list of free space and other temporary array(s) */ 2239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am]+1,&cj)); 2249566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space,cj)); 2259566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy(lnk,lnkbt)); 226b561aa9dSHong Zhang 22726be0446SHong Zhang /* put together the new symbolic matrix */ 2289566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C)); 2299566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,B)); 23058c24d83SHong Zhang 23158c24d83SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 23258c24d83SHong Zhang /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 2334222ddf1SHong Zhang c = (Mat_SeqAIJ*)(C->data); 234aa1aec99SHong Zhang c->free_a = PETSC_FALSE; 235e6b907acSBarry Smith c->free_ij = PETSC_TRUE; 23658c24d83SHong Zhang c->nonew = 0; 2374222ddf1SHong Zhang 2384222ddf1SHong Zhang /* fast, needs non-scalable O(bn) array 'abdense' */ 2394222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 2400b7e3e3dSHong Zhang 2417212da7cSHong Zhang /* set MatInfo */ 2427212da7cSHong Zhang afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5; 243f2b054eeSHong Zhang if (afill < 1.0) afill = 1.0; 2444222ddf1SHong Zhang C->info.mallocs = ndouble; 2454222ddf1SHong Zhang C->info.fill_ratio_given = fill; 2464222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 2477212da7cSHong Zhang 2487212da7cSHong Zhang #if defined(PETSC_USE_INFO) 2497212da7cSHong Zhang if (ci[am]) { 2509566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill)); 2519566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill)); 252f2b054eeSHong Zhang } else { 2539566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Empty matrix product\n")); 254be0fcf8dSHong Zhang } 255f2b054eeSHong Zhang #endif 25658c24d83SHong Zhang PetscFunctionReturn(0); 25758c24d83SHong Zhang } 258d50806bdSBarry Smith 259df97dc6dSFande Kong PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(Mat A,Mat B,Mat C) 260d50806bdSBarry Smith { 261d13dce4bSSatish Balay PetscLogDouble flops=0.0; 262d50806bdSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 263d50806bdSBarry Smith Mat_SeqAIJ *b = (Mat_SeqAIJ*)B->data; 264d50806bdSBarry Smith Mat_SeqAIJ *c = (Mat_SeqAIJ*)C->data; 26538baddfdSBarry Smith PetscInt *ai =a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj,*ci=c->i,*cj=c->j; 266c58ca2e3SHong Zhang PetscInt am =A->rmap->n,cm=C->rmap->n; 267519eb980SHong Zhang PetscInt i,j,k,anzi,bnzi,cnzi,brow; 2682e5835c6SStefano Zampini PetscScalar *ca,valtmp; 269aa1aec99SHong Zhang PetscScalar *ab_dense; 2706718818eSStefano Zampini PetscContainer cab_dense; 2712e5835c6SStefano Zampini const PetscScalar *aa,*ba,*baj; 272d50806bdSBarry Smith 273d50806bdSBarry Smith PetscFunctionBegin; 2749566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A,&aa)); 2759566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B,&ba)); 276aa1aec99SHong Zhang if (!c->a) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */ 2779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[cm]+1,&ca)); 278aa1aec99SHong Zhang c->a = ca; 279aa1aec99SHong Zhang c->free_a = PETSC_TRUE; 2806718818eSStefano Zampini } else ca = c->a; 2816718818eSStefano Zampini 2826718818eSStefano Zampini /* TODO this should be done in the symbolic phase */ 2836718818eSStefano Zampini /* However, this function is so heavily used (sometimes in an hidden way through multnumeric function pointers 2846718818eSStefano Zampini that is hard to eradicate) */ 2859566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)C,"__PETSc__ab_dense",(PetscObject*)&cab_dense)); 2866718818eSStefano Zampini if (!cab_dense) { 2879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(B->cmap->N,&ab_dense)); 2889566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF,&cab_dense)); 2899566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(cab_dense,ab_dense)); 2909566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(cab_dense,PetscContainerUserDestroyDefault)); 2919566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)C,"__PETSc__ab_dense",(PetscObject)cab_dense)); 2929566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)cab_dense)); 293d90d86d0SMatthew G. Knepley } 2949566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(cab_dense,(void**)&ab_dense)); 2959566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ab_dense,B->cmap->N)); 296aa1aec99SHong Zhang 297c124e916SHong Zhang /* clean old values in C */ 2989566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca,ci[cm])); 299d50806bdSBarry Smith /* Traverse A row-wise. */ 300d50806bdSBarry Smith /* Build the ith row in C by summing over nonzero columns in A, */ 301d50806bdSBarry Smith /* the rows of B corresponding to nonzeros of A. */ 302d50806bdSBarry Smith for (i=0; i<am; i++) { 303d50806bdSBarry Smith anzi = ai[i+1] - ai[i]; 304d50806bdSBarry Smith for (j=0; j<anzi; j++) { 305519eb980SHong Zhang brow = aj[j]; 306d50806bdSBarry Smith bnzi = bi[brow+1] - bi[brow]; 307d50806bdSBarry Smith bjj = bj + bi[brow]; 308d50806bdSBarry Smith baj = ba + bi[brow]; 309519eb980SHong Zhang /* perform dense axpy */ 31036ec6d2dSHong Zhang valtmp = aa[j]; 311519eb980SHong Zhang for (k=0; k<bnzi; k++) { 31236ec6d2dSHong Zhang ab_dense[bjj[k]] += valtmp*baj[k]; 313519eb980SHong Zhang } 314519eb980SHong Zhang flops += 2*bnzi; 315519eb980SHong Zhang } 316c58ca2e3SHong Zhang aj += anzi; aa += anzi; 317c58ca2e3SHong Zhang 318c58ca2e3SHong Zhang cnzi = ci[i+1] - ci[i]; 319519eb980SHong Zhang for (k=0; k<cnzi; k++) { 320519eb980SHong Zhang ca[k] += ab_dense[cj[k]]; 321519eb980SHong Zhang ab_dense[cj[k]] = 0.0; /* zero ab_dense */ 322519eb980SHong Zhang } 323519eb980SHong Zhang flops += cnzi; 324519eb980SHong Zhang cj += cnzi; ca += cnzi; 325519eb980SHong Zhang } 3262e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 3272e5835c6SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 3282e5835c6SStefano Zampini #endif 3299566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 3309566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 3319566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 3329566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A,&aa)); 3339566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B,&ba)); 334c58ca2e3SHong Zhang PetscFunctionReturn(0); 335c58ca2e3SHong Zhang } 336c58ca2e3SHong Zhang 33725023028SHong Zhang PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(Mat A,Mat B,Mat C) 338c58ca2e3SHong Zhang { 339c58ca2e3SHong Zhang PetscLogDouble flops=0.0; 340c58ca2e3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 341c58ca2e3SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ*)B->data; 342c58ca2e3SHong Zhang Mat_SeqAIJ *c = (Mat_SeqAIJ*)C->data; 343c58ca2e3SHong Zhang PetscInt *ai = a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj,*ci=c->i,*cj=c->j; 344c58ca2e3SHong Zhang PetscInt am = A->rmap->N,cm=C->rmap->N; 345c58ca2e3SHong Zhang PetscInt i,j,k,anzi,bnzi,cnzi,brow; 3462e5835c6SStefano Zampini PetscScalar *ca=c->a,valtmp; 3472e5835c6SStefano Zampini const PetscScalar *aa,*ba,*baj; 348c58ca2e3SHong Zhang PetscInt nextb; 349c58ca2e3SHong Zhang 350c58ca2e3SHong Zhang PetscFunctionBegin; 3519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A,&aa)); 3529566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B,&ba)); 353cf742fccSHong Zhang if (!ca) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */ 3549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[cm]+1,&ca)); 355cf742fccSHong Zhang c->a = ca; 356cf742fccSHong Zhang c->free_a = PETSC_TRUE; 357cf742fccSHong Zhang } 358cf742fccSHong Zhang 359c58ca2e3SHong Zhang /* clean old values in C */ 3609566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca,ci[cm])); 361c58ca2e3SHong Zhang /* Traverse A row-wise. */ 362c58ca2e3SHong Zhang /* Build the ith row in C by summing over nonzero columns in A, */ 363c58ca2e3SHong Zhang /* the rows of B corresponding to nonzeros of A. */ 364519eb980SHong Zhang for (i=0; i<am; i++) { 365519eb980SHong Zhang anzi = ai[i+1] - ai[i]; 366519eb980SHong Zhang cnzi = ci[i+1] - ci[i]; 367519eb980SHong Zhang for (j=0; j<anzi; j++) { 368519eb980SHong Zhang brow = aj[j]; 369519eb980SHong Zhang bnzi = bi[brow+1] - bi[brow]; 370519eb980SHong Zhang bjj = bj + bi[brow]; 371519eb980SHong Zhang baj = ba + bi[brow]; 372519eb980SHong Zhang /* perform sparse axpy */ 37336ec6d2dSHong Zhang valtmp = aa[j]; 374c124e916SHong Zhang nextb = 0; 375c124e916SHong Zhang for (k=0; nextb<bnzi; k++) { 376c124e916SHong Zhang if (cj[k] == bjj[nextb]) { /* ccol == bcol */ 37736ec6d2dSHong Zhang ca[k] += valtmp*baj[nextb++]; 378c124e916SHong Zhang } 379d50806bdSBarry Smith } 380d50806bdSBarry Smith flops += 2*bnzi; 381d50806bdSBarry Smith } 382519eb980SHong Zhang aj += anzi; aa += anzi; 383519eb980SHong Zhang cj += cnzi; ca += cnzi; 384d50806bdSBarry Smith } 3852e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 3862e5835c6SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 3872e5835c6SStefano Zampini #endif 3889566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 3899566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 3909566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 3919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A,&aa)); 3929566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B,&ba)); 393d50806bdSBarry Smith PetscFunctionReturn(0); 394d50806bdSBarry Smith } 395bc011b1eSHong Zhang 3964222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(Mat A,Mat B,PetscReal fill,Mat C) 39725296bd5SBarry Smith { 39825296bd5SBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 39925296bd5SBarry Smith PetscInt *ai = a->i,*bi=b->i,*ci,*cj; 4003c50cad2SHong Zhang PetscInt am = A->rmap->N,bn=B->cmap->N,bm=B->rmap->N; 40125296bd5SBarry Smith MatScalar *ca; 40225296bd5SBarry Smith PetscReal afill; 403eca6b86aSHong Zhang PetscInt i,j,anzi,brow,bnzj,cnzi,*bj,*aj,*lnk,ndouble=0,Crmax; 404eca6b86aSHong Zhang PetscTable ta; 4050298fd71SBarry Smith PetscFreeSpaceList free_space=NULL,current_space=NULL; 40625296bd5SBarry Smith 40725296bd5SBarry Smith PetscFunctionBegin; 4083c50cad2SHong Zhang /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_fast() */ 4093c50cad2SHong Zhang /*-----------------------------------------------------------------------------------------*/ 4103c50cad2SHong Zhang /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 4119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am+2,&ci)); 4123c50cad2SHong Zhang ci[0] = 0; 4133c50cad2SHong Zhang 4143c50cad2SHong Zhang /* create and initialize a linked list */ 4159566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(bn,bn,&ta)); 416c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b,bm,ta); 4179566063dSJacob Faibussowitsch PetscCall(PetscTableGetCount(ta,&Crmax)); 4189566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&ta)); 419eca6b86aSHong Zhang 4209566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_fast(Crmax,&lnk)); 4213c50cad2SHong Zhang 4223c50cad2SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 4239566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space)); 4243c50cad2SHong Zhang current_space = free_space; 4253c50cad2SHong Zhang 4263c50cad2SHong Zhang /* Determine ci and cj */ 4273c50cad2SHong Zhang for (i=0; i<am; i++) { 4283c50cad2SHong Zhang anzi = ai[i+1] - ai[i]; 4293c50cad2SHong Zhang aj = a->j + ai[i]; 4303c50cad2SHong Zhang for (j=0; j<anzi; j++) { 4313c50cad2SHong Zhang brow = aj[j]; 4323c50cad2SHong Zhang bnzj = bi[brow+1] - bi[brow]; 4333c50cad2SHong Zhang bj = b->j + bi[brow]; 4343c50cad2SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 4359566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_fast(bnzj,bj,lnk)); 4363c50cad2SHong Zhang } 4378c78258cSHong Zhang /* add possible missing diagonal entry */ 4388c78258cSHong Zhang if (C->force_diagonals) { 4399566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_fast(1,&i,lnk)); 4408c78258cSHong Zhang } 4413c50cad2SHong Zhang cnzi = lnk[1]; 4423c50cad2SHong Zhang 4433c50cad2SHong Zhang /* If free space is not available, make more free space */ 4443c50cad2SHong Zhang /* Double the amount of total space in the list */ 4453c50cad2SHong Zhang if (current_space->local_remaining<cnzi) { 4469566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi,current_space->total_array_size),¤t_space)); 4473c50cad2SHong Zhang ndouble++; 4483c50cad2SHong Zhang } 4493c50cad2SHong Zhang 4503c50cad2SHong Zhang /* Copy data into free space, then initialize lnk */ 4519566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_fast(cnzi,current_space->array,lnk)); 4522205254eSKarl Rupp 4533c50cad2SHong Zhang current_space->array += cnzi; 4543c50cad2SHong Zhang current_space->local_used += cnzi; 4553c50cad2SHong Zhang current_space->local_remaining -= cnzi; 4562205254eSKarl Rupp 4573c50cad2SHong Zhang ci[i+1] = ci[i] + cnzi; 4583c50cad2SHong Zhang } 4593c50cad2SHong Zhang 4603c50cad2SHong Zhang /* Column indices are in the list of free space */ 4613c50cad2SHong Zhang /* Allocate space for cj, initialize cj, and */ 4623c50cad2SHong Zhang /* destroy list of free space and other temporary array(s) */ 4639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am]+1,&cj)); 4649566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space,cj)); 4659566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_fast(lnk)); 46625296bd5SBarry Smith 46725296bd5SBarry Smith /* Allocate space for ca */ 4689566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[am]+1,&ca)); 46925296bd5SBarry Smith 47025296bd5SBarry Smith /* put together the new symbolic matrix */ 4719566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,ca,((PetscObject)A)->type_name,C)); 4729566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,B)); 47325296bd5SBarry Smith 47425296bd5SBarry Smith /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 47525296bd5SBarry Smith /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 4764222ddf1SHong Zhang c = (Mat_SeqAIJ*)(C->data); 47725296bd5SBarry Smith c->free_a = PETSC_TRUE; 47825296bd5SBarry Smith c->free_ij = PETSC_TRUE; 47925296bd5SBarry Smith c->nonew = 0; 4802205254eSKarl Rupp 4814222ddf1SHong Zhang /* slower, less memory */ 4824222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable; 48325296bd5SBarry Smith 48425296bd5SBarry Smith /* set MatInfo */ 48525296bd5SBarry Smith afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5; 48625296bd5SBarry Smith if (afill < 1.0) afill = 1.0; 4874222ddf1SHong Zhang C->info.mallocs = ndouble; 4884222ddf1SHong Zhang C->info.fill_ratio_given = fill; 4894222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 49025296bd5SBarry Smith 49125296bd5SBarry Smith #if defined(PETSC_USE_INFO) 49225296bd5SBarry Smith if (ci[am]) { 4939566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill)); 4949566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill)); 49525296bd5SBarry Smith } else { 4969566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Empty matrix product\n")); 49725296bd5SBarry Smith } 49825296bd5SBarry Smith #endif 49925296bd5SBarry Smith PetscFunctionReturn(0); 50025296bd5SBarry Smith } 50125296bd5SBarry Smith 5024222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(Mat A,Mat B,PetscReal fill,Mat C) 503e9e4536cSHong Zhang { 504e9e4536cSHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 505bf9555e6SHong Zhang PetscInt *ai = a->i,*bi=b->i,*ci,*cj; 50625c41797SHong Zhang PetscInt am = A->rmap->N,bn=B->cmap->N,bm=B->rmap->N; 507e9e4536cSHong Zhang MatScalar *ca; 508e9e4536cSHong Zhang PetscReal afill; 509eca6b86aSHong Zhang PetscInt i,j,anzi,brow,bnzj,cnzi,*bj,*aj,*lnk,ndouble=0,Crmax; 510eca6b86aSHong Zhang PetscTable ta; 5110298fd71SBarry Smith PetscFreeSpaceList free_space=NULL,current_space=NULL; 512e9e4536cSHong Zhang 513e9e4536cSHong Zhang PetscFunctionBegin; 514bd958071SHong Zhang /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_Scalalbe() */ 515bd958071SHong Zhang /*---------------------------------------------------------------------------------------------*/ 516bd958071SHong Zhang /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 5179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am+2,&ci)); 518bd958071SHong Zhang ci[0] = 0; 519bd958071SHong Zhang 520bd958071SHong Zhang /* create and initialize a linked list */ 5219566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(bn,bn,&ta)); 522c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b,bm,ta); 5239566063dSJacob Faibussowitsch PetscCall(PetscTableGetCount(ta,&Crmax)); 5249566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&ta)); 5259566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Crmax,&lnk)); 526bd958071SHong Zhang 527bd958071SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 5289566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space)); 529bd958071SHong Zhang current_space = free_space; 530bd958071SHong Zhang 531bd958071SHong Zhang /* Determine ci and cj */ 532bd958071SHong Zhang for (i=0; i<am; i++) { 533bd958071SHong Zhang anzi = ai[i+1] - ai[i]; 534bd958071SHong Zhang aj = a->j + ai[i]; 535bd958071SHong Zhang for (j=0; j<anzi; j++) { 536bd958071SHong Zhang brow = aj[j]; 537bd958071SHong Zhang bnzj = bi[brow+1] - bi[brow]; 538bd958071SHong Zhang bj = b->j + bi[brow]; 539bd958071SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 5409566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(bnzj,bj,lnk)); 541bd958071SHong Zhang } 5428c78258cSHong Zhang /* add possible missing diagonal entry */ 5438c78258cSHong Zhang if (C->force_diagonals) { 5449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(1,&i,lnk)); 5458c78258cSHong Zhang } 5468c78258cSHong Zhang 547bd958071SHong Zhang cnzi = lnk[0]; 548bd958071SHong Zhang 549bd958071SHong Zhang /* If free space is not available, make more free space */ 550bd958071SHong Zhang /* Double the amount of total space in the list */ 551bd958071SHong Zhang if (current_space->local_remaining<cnzi) { 5529566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi,current_space->total_array_size),¤t_space)); 553bd958071SHong Zhang ndouble++; 554bd958071SHong Zhang } 555bd958071SHong Zhang 556bd958071SHong Zhang /* Copy data into free space, then initialize lnk */ 5579566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(cnzi,current_space->array,lnk)); 5582205254eSKarl Rupp 559bd958071SHong Zhang current_space->array += cnzi; 560bd958071SHong Zhang current_space->local_used += cnzi; 561bd958071SHong Zhang current_space->local_remaining -= cnzi; 5622205254eSKarl Rupp 563bd958071SHong Zhang ci[i+1] = ci[i] + cnzi; 564bd958071SHong Zhang } 565bd958071SHong Zhang 566bd958071SHong Zhang /* Column indices are in the list of free space */ 567bd958071SHong Zhang /* Allocate space for cj, initialize cj, and */ 568bd958071SHong Zhang /* destroy list of free space and other temporary array(s) */ 5699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am]+1,&cj)); 5709566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space,cj)); 5719566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 572e9e4536cSHong Zhang 573e9e4536cSHong Zhang /* Allocate space for ca */ 574bd958071SHong Zhang /*-----------------------*/ 5759566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[am]+1,&ca)); 576e9e4536cSHong Zhang 577e9e4536cSHong Zhang /* put together the new symbolic matrix */ 5789566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,ca,((PetscObject)A)->type_name,C)); 5799566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,B)); 580e9e4536cSHong Zhang 581e9e4536cSHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 582e9e4536cSHong Zhang /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 5834222ddf1SHong Zhang c = (Mat_SeqAIJ*)(C->data); 584e9e4536cSHong Zhang c->free_a = PETSC_TRUE; 585e9e4536cSHong Zhang c->free_ij = PETSC_TRUE; 586e9e4536cSHong Zhang c->nonew = 0; 5872205254eSKarl Rupp 5884222ddf1SHong Zhang /* slower, less memory */ 5894222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable; 590e9e4536cSHong Zhang 591e9e4536cSHong Zhang /* set MatInfo */ 592e9e4536cSHong Zhang afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5; 593e9e4536cSHong Zhang if (afill < 1.0) afill = 1.0; 5944222ddf1SHong Zhang C->info.mallocs = ndouble; 5954222ddf1SHong Zhang C->info.fill_ratio_given = fill; 5964222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 597e9e4536cSHong Zhang 598e9e4536cSHong Zhang #if defined(PETSC_USE_INFO) 599e9e4536cSHong Zhang if (ci[am]) { 6009566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill)); 6019566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill)); 602e9e4536cSHong Zhang } else { 6039566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Empty matrix product\n")); 604e9e4536cSHong Zhang } 605e9e4536cSHong Zhang #endif 606e9e4536cSHong Zhang PetscFunctionReturn(0); 607e9e4536cSHong Zhang } 608e9e4536cSHong Zhang 6094222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(Mat A,Mat B,PetscReal fill,Mat C) 6100ced3a2bSJed Brown { 6110ced3a2bSJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 6120ced3a2bSJed Brown const PetscInt *ai=a->i,*bi=b->i,*aj=a->j,*bj=b->j; 6130ced3a2bSJed Brown PetscInt *ci,*cj,*bb; 6140ced3a2bSJed Brown PetscInt am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N; 6150ced3a2bSJed Brown PetscReal afill; 6160ced3a2bSJed Brown PetscInt i,j,col,ndouble = 0; 6170298fd71SBarry Smith PetscFreeSpaceList free_space=NULL,current_space=NULL; 6180ced3a2bSJed Brown PetscHeap h; 6190ced3a2bSJed Brown 6200ced3a2bSJed Brown PetscFunctionBegin; 621cd093f1dSJed Brown /* Get ci and cj - by merging sorted rows using a heap */ 6220ced3a2bSJed Brown /*---------------------------------------------------------------------------------------------*/ 6230ced3a2bSJed Brown /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 6249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am+2,&ci)); 6250ced3a2bSJed Brown ci[0] = 0; 6260ced3a2bSJed Brown 6270ced3a2bSJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 6289566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space)); 6290ced3a2bSJed Brown current_space = free_space; 6300ced3a2bSJed Brown 6319566063dSJacob Faibussowitsch PetscCall(PetscHeapCreate(a->rmax,&h)); 6329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->rmax,&bb)); 6330ced3a2bSJed Brown 6340ced3a2bSJed Brown /* Determine ci and cj */ 6350ced3a2bSJed Brown for (i=0; i<am; i++) { 6360ced3a2bSJed Brown const PetscInt anzi = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 6370ced3a2bSJed Brown const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 6380ced3a2bSJed Brown ci[i+1] = ci[i]; 6390ced3a2bSJed Brown /* Populate the min heap */ 6400ced3a2bSJed Brown for (j=0; j<anzi; j++) { 6410ced3a2bSJed Brown bb[j] = bi[acol[j]]; /* bb points at the start of the row */ 6420ced3a2bSJed Brown if (bb[j] < bi[acol[j]+1]) { /* Add if row is nonempty */ 6439566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h,j,bj[bb[j]++])); 6440ced3a2bSJed Brown } 6450ced3a2bSJed Brown } 6460ced3a2bSJed Brown /* Pick off the min element, adding it to free space */ 6479566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h,&j,&col)); 6480ced3a2bSJed Brown while (j >= 0) { 6490ced3a2bSJed Brown if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */ 6509566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2,current_space->total_array_size),16 << 20),¤t_space)); 6510ced3a2bSJed Brown ndouble++; 6520ced3a2bSJed Brown } 6530ced3a2bSJed Brown *(current_space->array++) = col; 6540ced3a2bSJed Brown current_space->local_used++; 6550ced3a2bSJed Brown current_space->local_remaining--; 6560ced3a2bSJed Brown ci[i+1]++; 6570ced3a2bSJed Brown 6580ced3a2bSJed Brown /* stash if anything else remains in this row of B */ 6599566063dSJacob Faibussowitsch if (bb[j] < bi[acol[j]+1]) PetscCall(PetscHeapStash(h,j,bj[bb[j]++])); 6600ced3a2bSJed Brown while (1) { /* pop and stash any other rows of B that also had an entry in this column */ 6610ced3a2bSJed Brown PetscInt j2,col2; 6629566063dSJacob Faibussowitsch PetscCall(PetscHeapPeek(h,&j2,&col2)); 6630ced3a2bSJed Brown if (col2 != col) break; 6649566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h,&j2,&col2)); 6659566063dSJacob Faibussowitsch if (bb[j2] < bi[acol[j2]+1]) PetscCall(PetscHeapStash(h,j2,bj[bb[j2]++])); 6660ced3a2bSJed Brown } 6670ced3a2bSJed Brown /* Put any stashed elements back into the min heap */ 6689566063dSJacob Faibussowitsch PetscCall(PetscHeapUnstash(h)); 6699566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h,&j,&col)); 6700ced3a2bSJed Brown } 6710ced3a2bSJed Brown } 6729566063dSJacob Faibussowitsch PetscCall(PetscFree(bb)); 6739566063dSJacob Faibussowitsch PetscCall(PetscHeapDestroy(&h)); 6740ced3a2bSJed Brown 6750ced3a2bSJed Brown /* Column indices are in the list of free space */ 6760ced3a2bSJed Brown /* Allocate space for cj, initialize cj, and */ 6770ced3a2bSJed Brown /* destroy list of free space and other temporary array(s) */ 6789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am],&cj)); 6799566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space,cj)); 6800ced3a2bSJed Brown 6810ced3a2bSJed Brown /* put together the new symbolic matrix */ 6829566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C)); 6839566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,B)); 6840ced3a2bSJed Brown 6850ced3a2bSJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6860ced3a2bSJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 6874222ddf1SHong Zhang c = (Mat_SeqAIJ*)(C->data); 6880ced3a2bSJed Brown c->free_a = PETSC_TRUE; 6890ced3a2bSJed Brown c->free_ij = PETSC_TRUE; 6900ced3a2bSJed Brown c->nonew = 0; 69126fbe8dcSKarl Rupp 6924222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 6930ced3a2bSJed Brown 6940ced3a2bSJed Brown /* set MatInfo */ 6950ced3a2bSJed Brown afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5; 6960ced3a2bSJed Brown if (afill < 1.0) afill = 1.0; 6974222ddf1SHong Zhang C->info.mallocs = ndouble; 6984222ddf1SHong Zhang C->info.fill_ratio_given = fill; 6994222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 7000ced3a2bSJed Brown 7010ced3a2bSJed Brown #if defined(PETSC_USE_INFO) 7020ced3a2bSJed Brown if (ci[am]) { 7039566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill)); 7049566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill)); 7050ced3a2bSJed Brown } else { 7069566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Empty matrix product\n")); 7070ced3a2bSJed Brown } 7080ced3a2bSJed Brown #endif 7090ced3a2bSJed Brown PetscFunctionReturn(0); 7100ced3a2bSJed Brown } 711e9e4536cSHong Zhang 7124222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(Mat A,Mat B,PetscReal fill,Mat C) 7138a07c6f1SJed Brown { 7148a07c6f1SJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 7158a07c6f1SJed Brown const PetscInt *ai = a->i,*bi=b->i,*aj=a->j,*bj=b->j; 7168a07c6f1SJed Brown PetscInt *ci,*cj,*bb; 7178a07c6f1SJed Brown PetscInt am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N; 7188a07c6f1SJed Brown PetscReal afill; 7198a07c6f1SJed Brown PetscInt i,j,col,ndouble = 0; 7200298fd71SBarry Smith PetscFreeSpaceList free_space=NULL,current_space=NULL; 7218a07c6f1SJed Brown PetscHeap h; 7228a07c6f1SJed Brown PetscBT bt; 7238a07c6f1SJed Brown 7248a07c6f1SJed Brown PetscFunctionBegin; 725cd093f1dSJed Brown /* Get ci and cj - using a heap for the sorted rows, but use BT so that each index is only added once */ 7268a07c6f1SJed Brown /*---------------------------------------------------------------------------------------------*/ 7278a07c6f1SJed Brown /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 7289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am+2,&ci)); 7298a07c6f1SJed Brown ci[0] = 0; 7308a07c6f1SJed Brown 7318a07c6f1SJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 7329566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space)); 7332205254eSKarl Rupp 7348a07c6f1SJed Brown current_space = free_space; 7358a07c6f1SJed Brown 7369566063dSJacob Faibussowitsch PetscCall(PetscHeapCreate(a->rmax,&h)); 7379566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->rmax,&bb)); 7389566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(bn,&bt)); 7398a07c6f1SJed Brown 7408a07c6f1SJed Brown /* Determine ci and cj */ 7418a07c6f1SJed Brown for (i=0; i<am; i++) { 7428a07c6f1SJed Brown const PetscInt anzi = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 7438a07c6f1SJed Brown const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 7448a07c6f1SJed Brown const PetscInt *fptr = current_space->array; /* Save beginning of the row so we can clear the BT later */ 7458a07c6f1SJed Brown ci[i+1] = ci[i]; 7468a07c6f1SJed Brown /* Populate the min heap */ 7478a07c6f1SJed Brown for (j=0; j<anzi; j++) { 7488a07c6f1SJed Brown PetscInt brow = acol[j]; 7498a07c6f1SJed Brown for (bb[j] = bi[brow]; bb[j] < bi[brow+1]; bb[j]++) { 7508a07c6f1SJed Brown PetscInt bcol = bj[bb[j]]; 7518a07c6f1SJed Brown if (!PetscBTLookupSet(bt,bcol)) { /* new entry */ 7529566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h,j,bcol)); 7538a07c6f1SJed Brown bb[j]++; 7548a07c6f1SJed Brown break; 7558a07c6f1SJed Brown } 7568a07c6f1SJed Brown } 7578a07c6f1SJed Brown } 7588a07c6f1SJed Brown /* Pick off the min element, adding it to free space */ 7599566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h,&j,&col)); 7608a07c6f1SJed Brown while (j >= 0) { 7618a07c6f1SJed Brown if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */ 7620298fd71SBarry Smith fptr = NULL; /* need PetscBTMemzero */ 7639566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2,current_space->total_array_size),16 << 20),¤t_space)); 7648a07c6f1SJed Brown ndouble++; 7658a07c6f1SJed Brown } 7668a07c6f1SJed Brown *(current_space->array++) = col; 7678a07c6f1SJed Brown current_space->local_used++; 7688a07c6f1SJed Brown current_space->local_remaining--; 7698a07c6f1SJed Brown ci[i+1]++; 7708a07c6f1SJed Brown 7718a07c6f1SJed Brown /* stash if anything else remains in this row of B */ 7728a07c6f1SJed Brown for (; bb[j] < bi[acol[j]+1]; bb[j]++) { 7738a07c6f1SJed Brown PetscInt bcol = bj[bb[j]]; 7748a07c6f1SJed Brown if (!PetscBTLookupSet(bt,bcol)) { /* new entry */ 7759566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h,j,bcol)); 7768a07c6f1SJed Brown bb[j]++; 7778a07c6f1SJed Brown break; 7788a07c6f1SJed Brown } 7798a07c6f1SJed Brown } 7809566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h,&j,&col)); 7818a07c6f1SJed Brown } 7828a07c6f1SJed Brown if (fptr) { /* Clear the bits for this row */ 7839566063dSJacob Faibussowitsch for (; fptr<current_space->array; fptr++) PetscCall(PetscBTClear(bt,*fptr)); 7848a07c6f1SJed Brown } else { /* We reallocated so we don't remember (easily) how to clear only the bits we changed */ 7859566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(bn,bt)); 7868a07c6f1SJed Brown } 7878a07c6f1SJed Brown } 7889566063dSJacob Faibussowitsch PetscCall(PetscFree(bb)); 7899566063dSJacob Faibussowitsch PetscCall(PetscHeapDestroy(&h)); 7909566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 7918a07c6f1SJed Brown 7928a07c6f1SJed Brown /* Column indices are in the list of free space */ 7938a07c6f1SJed Brown /* Allocate space for cj, initialize cj, and */ 7948a07c6f1SJed Brown /* destroy list of free space and other temporary array(s) */ 7959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am],&cj)); 7969566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space,cj)); 7978a07c6f1SJed Brown 7988a07c6f1SJed Brown /* put together the new symbolic matrix */ 7999566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C)); 8009566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,B)); 8018a07c6f1SJed Brown 8028a07c6f1SJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 8038a07c6f1SJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 8044222ddf1SHong Zhang c = (Mat_SeqAIJ*)(C->data); 8058a07c6f1SJed Brown c->free_a = PETSC_TRUE; 8068a07c6f1SJed Brown c->free_ij = PETSC_TRUE; 8078a07c6f1SJed Brown c->nonew = 0; 80826fbe8dcSKarl Rupp 8094222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 8108a07c6f1SJed Brown 8118a07c6f1SJed Brown /* set MatInfo */ 8128a07c6f1SJed Brown afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5; 8138a07c6f1SJed Brown if (afill < 1.0) afill = 1.0; 8144222ddf1SHong Zhang C->info.mallocs = ndouble; 8154222ddf1SHong Zhang C->info.fill_ratio_given = fill; 8164222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 8178a07c6f1SJed Brown 8188a07c6f1SJed Brown #if defined(PETSC_USE_INFO) 8198a07c6f1SJed Brown if (ci[am]) { 8209566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill)); 8219566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill)); 8228a07c6f1SJed Brown } else { 8239566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Empty matrix product\n")); 8248a07c6f1SJed Brown } 8258a07c6f1SJed Brown #endif 8268a07c6f1SJed Brown PetscFunctionReturn(0); 8278a07c6f1SJed Brown } 8288a07c6f1SJed Brown 8294222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(Mat A,Mat B,PetscReal fill,Mat C) 830d7ed1a4dSandi selinger { 831d7ed1a4dSandi selinger Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 832d7ed1a4dSandi selinger const PetscInt *ai=a->i,*bi=b->i,*aj=a->j,*bj=b->j,*inputi,*inputj,*inputcol,*inputcol_L1; 833d7ed1a4dSandi selinger PetscInt *ci,*cj,*outputj,worki_L1[9],worki_L2[9]; 834d7ed1a4dSandi selinger PetscInt c_maxmem,a_maxrownnz=0,a_rownnz; 835d7ed1a4dSandi selinger const PetscInt workcol[8]={0,1,2,3,4,5,6,7}; 836d7ed1a4dSandi selinger const PetscInt am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N; 837d7ed1a4dSandi selinger const PetscInt *brow_ptr[8],*brow_end[8]; 838d7ed1a4dSandi selinger PetscInt window[8]; 839d7ed1a4dSandi selinger PetscInt window_min,old_window_min,ci_nnz,outputi_nnz=0,L1_nrows,L2_nrows; 840d7ed1a4dSandi selinger PetscInt i,k,ndouble=0,L1_rowsleft,rowsleft; 841d7ed1a4dSandi selinger PetscReal afill; 842f83700f2Sandi selinger PetscInt *workj_L1,*workj_L2,*workj_L3; 8437660c4dbSandi selinger PetscInt L1_nnz,L2_nnz; 844d7ed1a4dSandi selinger 845d7ed1a4dSandi selinger /* Step 1: Get upper bound on memory required for allocation. 846d7ed1a4dSandi selinger Because of the way virtual memory works, 847d7ed1a4dSandi selinger only the memory pages that are actually needed will be physically allocated. */ 848d7ed1a4dSandi selinger PetscFunctionBegin; 8499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am+1,&ci)); 850d7ed1a4dSandi selinger for (i=0; i<am; i++) { 851d7ed1a4dSandi selinger const PetscInt anzi = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 852d7ed1a4dSandi selinger const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 853d7ed1a4dSandi selinger a_rownnz = 0; 854d7ed1a4dSandi selinger for (k=0; k<anzi; ++k) { 855d7ed1a4dSandi selinger a_rownnz += bi[acol[k]+1] - bi[acol[k]]; 856d7ed1a4dSandi selinger if (a_rownnz > bn) { 857d7ed1a4dSandi selinger a_rownnz = bn; 858d7ed1a4dSandi selinger break; 859d7ed1a4dSandi selinger } 860d7ed1a4dSandi selinger } 861d7ed1a4dSandi selinger a_maxrownnz = PetscMax(a_maxrownnz, a_rownnz); 862d7ed1a4dSandi selinger } 863d7ed1a4dSandi selinger /* temporary work areas for merging rows */ 8649566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz*8,&workj_L1)); 8659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz*8,&workj_L2)); 8669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz,&workj_L3)); 867d7ed1a4dSandi selinger 8687660c4dbSandi selinger /* This should be enough for almost all matrices. If not, memory is reallocated later. */ 8697660c4dbSandi selinger c_maxmem = 8*(ai[am]+bi[bm]); 870d7ed1a4dSandi selinger /* Step 2: Populate pattern for C */ 8719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(c_maxmem,&cj)); 872d7ed1a4dSandi selinger 873d7ed1a4dSandi selinger ci_nnz = 0; 874d7ed1a4dSandi selinger ci[0] = 0; 875d7ed1a4dSandi selinger worki_L1[0] = 0; 876d7ed1a4dSandi selinger worki_L2[0] = 0; 877d7ed1a4dSandi selinger for (i=0; i<am; i++) { 878d7ed1a4dSandi selinger const PetscInt anzi = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 879d7ed1a4dSandi selinger const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 880d7ed1a4dSandi selinger rowsleft = anzi; 881d7ed1a4dSandi selinger inputcol_L1 = acol; 882d7ed1a4dSandi selinger L2_nnz = 0; 8837660c4dbSandi selinger L2_nrows = 1; /* Number of rows to be merged on Level 3. output of L3 already exists -> initial value 1 */ 8847660c4dbSandi selinger worki_L2[1] = 0; 88508fe1b3cSKarl Rupp outputi_nnz = 0; 886d7ed1a4dSandi selinger 887d7ed1a4dSandi selinger /* If the number of indices in C so far + the max number of columns in the next row > c_maxmem -> allocate more memory */ 888d7ed1a4dSandi selinger while (ci_nnz+a_maxrownnz > c_maxmem) { 889d7ed1a4dSandi selinger c_maxmem *= 2; 890d7ed1a4dSandi selinger ndouble++; 8919566063dSJacob Faibussowitsch PetscCall(PetscRealloc(sizeof(PetscInt)*c_maxmem,&cj)); 892d7ed1a4dSandi selinger } 893d7ed1a4dSandi selinger 894d7ed1a4dSandi selinger while (rowsleft) { 895d7ed1a4dSandi selinger L1_rowsleft = PetscMin(64, rowsleft); /* In the inner loop max 64 rows of B can be merged */ 896d7ed1a4dSandi selinger L1_nrows = 0; 8977660c4dbSandi selinger L1_nnz = 0; 898d7ed1a4dSandi selinger inputcol = inputcol_L1; 899d7ed1a4dSandi selinger inputi = bi; 900d7ed1a4dSandi selinger inputj = bj; 901d7ed1a4dSandi selinger 902d7ed1a4dSandi selinger /* The following macro is used to specialize for small rows in A. 903d7ed1a4dSandi selinger This helps with compiler unrolling, improving performance substantially. 904f83700f2Sandi selinger Input: inputj inputi inputcol bn 905d7ed1a4dSandi selinger Output: outputj outputi_nnz */ 906d7ed1a4dSandi selinger #define MatMatMultSymbolic_RowMergeMacro(ANNZ) \ 907d7ed1a4dSandi selinger window_min = bn; \ 9087660c4dbSandi selinger outputi_nnz = 0; \ 9097660c4dbSandi selinger for (k=0; k<ANNZ; ++k) { \ 910d7ed1a4dSandi selinger brow_ptr[k] = inputj + inputi[inputcol[k]]; \ 911d7ed1a4dSandi selinger brow_end[k] = inputj + inputi[inputcol[k]+1]; \ 912d7ed1a4dSandi selinger window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \ 913d7ed1a4dSandi selinger window_min = PetscMin(window[k], window_min); \ 914d7ed1a4dSandi selinger } \ 915d7ed1a4dSandi selinger while (window_min < bn) { \ 916d7ed1a4dSandi selinger outputj[outputi_nnz++] = window_min; \ 917d7ed1a4dSandi selinger /* advance front and compute new minimum */ \ 918d7ed1a4dSandi selinger old_window_min = window_min; \ 919d7ed1a4dSandi selinger window_min = bn; \ 920d7ed1a4dSandi selinger for (k=0; k<ANNZ; ++k) { \ 921d7ed1a4dSandi selinger if (window[k] == old_window_min) { \ 922d7ed1a4dSandi selinger brow_ptr[k]++; \ 923d7ed1a4dSandi selinger window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \ 924d7ed1a4dSandi selinger } \ 925d7ed1a4dSandi selinger window_min = PetscMin(window[k], window_min); \ 926d7ed1a4dSandi selinger } \ 927d7ed1a4dSandi selinger } 928d7ed1a4dSandi selinger 929d7ed1a4dSandi selinger /************** L E V E L 1 ***************/ 930d7ed1a4dSandi selinger /* Merge up to 8 rows of B to L1 work array*/ 931d7ed1a4dSandi selinger while (L1_rowsleft) { 9327660c4dbSandi selinger outputi_nnz = 0; 9337660c4dbSandi selinger if (anzi > 8) outputj = workj_L1 + L1_nnz; /* Level 1 rowmerge*/ 9347660c4dbSandi selinger else outputj = cj + ci_nnz; /* Merge directly to C */ 9357660c4dbSandi selinger 936d7ed1a4dSandi selinger switch (L1_rowsleft) { 937d7ed1a4dSandi selinger case 1: brow_ptr[0] = inputj + inputi[inputcol[0]]; 938d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0]+1]; 939d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 940d7ed1a4dSandi selinger inputcol += L1_rowsleft; 941d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 942d7ed1a4dSandi selinger L1_rowsleft = 0; 943d7ed1a4dSandi selinger break; 944d7ed1a4dSandi selinger case 2: MatMatMultSymbolic_RowMergeMacro(2); 945d7ed1a4dSandi selinger inputcol += L1_rowsleft; 946d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 947d7ed1a4dSandi selinger L1_rowsleft = 0; 948d7ed1a4dSandi selinger break; 949d7ed1a4dSandi selinger case 3: MatMatMultSymbolic_RowMergeMacro(3); 950d7ed1a4dSandi selinger inputcol += L1_rowsleft; 951d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 952d7ed1a4dSandi selinger L1_rowsleft = 0; 953d7ed1a4dSandi selinger break; 954d7ed1a4dSandi selinger case 4: MatMatMultSymbolic_RowMergeMacro(4); 955d7ed1a4dSandi selinger inputcol += L1_rowsleft; 956d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 957d7ed1a4dSandi selinger L1_rowsleft = 0; 958d7ed1a4dSandi selinger break; 959d7ed1a4dSandi selinger case 5: MatMatMultSymbolic_RowMergeMacro(5); 960d7ed1a4dSandi selinger inputcol += L1_rowsleft; 961d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 962d7ed1a4dSandi selinger L1_rowsleft = 0; 963d7ed1a4dSandi selinger break; 964d7ed1a4dSandi selinger case 6: MatMatMultSymbolic_RowMergeMacro(6); 965d7ed1a4dSandi selinger inputcol += L1_rowsleft; 966d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 967d7ed1a4dSandi selinger L1_rowsleft = 0; 968d7ed1a4dSandi selinger break; 969d7ed1a4dSandi selinger case 7: MatMatMultSymbolic_RowMergeMacro(7); 970d7ed1a4dSandi selinger inputcol += L1_rowsleft; 971d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 972d7ed1a4dSandi selinger L1_rowsleft = 0; 973d7ed1a4dSandi selinger break; 974d7ed1a4dSandi selinger default: MatMatMultSymbolic_RowMergeMacro(8); 975d7ed1a4dSandi selinger inputcol += 8; 976d7ed1a4dSandi selinger rowsleft -= 8; 977d7ed1a4dSandi selinger L1_rowsleft -= 8; 978d7ed1a4dSandi selinger break; 979d7ed1a4dSandi selinger } 980d7ed1a4dSandi selinger inputcol_L1 = inputcol; 9817660c4dbSandi selinger L1_nnz += outputi_nnz; 9827660c4dbSandi selinger worki_L1[++L1_nrows] = L1_nnz; 983d7ed1a4dSandi selinger } 984d7ed1a4dSandi selinger 985d7ed1a4dSandi selinger /********************** L E V E L 2 ************************/ 986d7ed1a4dSandi selinger /* Merge from L1 work array to either C or to L2 work array */ 987d7ed1a4dSandi selinger if (anzi > 8) { 988d7ed1a4dSandi selinger inputi = worki_L1; 989d7ed1a4dSandi selinger inputj = workj_L1; 990d7ed1a4dSandi selinger inputcol = workcol; 991d7ed1a4dSandi selinger outputi_nnz = 0; 992d7ed1a4dSandi selinger 993d7ed1a4dSandi selinger if (anzi <= 64) outputj = cj + ci_nnz; /* Merge from L1 work array to C */ 994d7ed1a4dSandi selinger else outputj = workj_L2 + L2_nnz; /* Merge from L1 work array to L2 work array */ 995d7ed1a4dSandi selinger 996d7ed1a4dSandi selinger switch (L1_nrows) { 997d7ed1a4dSandi selinger case 1: brow_ptr[0] = inputj + inputi[inputcol[0]]; 998d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0]+1]; 999d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 1000d7ed1a4dSandi selinger break; 1001d7ed1a4dSandi selinger case 2: MatMatMultSymbolic_RowMergeMacro(2); break; 1002d7ed1a4dSandi selinger case 3: MatMatMultSymbolic_RowMergeMacro(3); break; 1003d7ed1a4dSandi selinger case 4: MatMatMultSymbolic_RowMergeMacro(4); break; 1004d7ed1a4dSandi selinger case 5: MatMatMultSymbolic_RowMergeMacro(5); break; 1005d7ed1a4dSandi selinger case 6: MatMatMultSymbolic_RowMergeMacro(6); break; 1006d7ed1a4dSandi selinger case 7: MatMatMultSymbolic_RowMergeMacro(7); break; 1007d7ed1a4dSandi selinger case 8: MatMatMultSymbolic_RowMergeMacro(8); break; 1008d7ed1a4dSandi selinger default: SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatMatMult logic error: Not merging 1-8 rows from L1 work array!"); 1009d7ed1a4dSandi selinger } 1010d7ed1a4dSandi selinger L2_nnz += outputi_nnz; 1011d7ed1a4dSandi selinger worki_L2[++L2_nrows] = L2_nnz; 1012d7ed1a4dSandi selinger 10137660c4dbSandi selinger /************************ L E V E L 3 **********************/ 10147660c4dbSandi selinger /* Merge from L2 work array to either C or to L2 work array */ 1015d7ed1a4dSandi selinger if (anzi > 64 && (L2_nrows == 8 || rowsleft == 0)) { 1016d7ed1a4dSandi selinger inputi = worki_L2; 1017d7ed1a4dSandi selinger inputj = workj_L2; 1018d7ed1a4dSandi selinger inputcol = workcol; 1019d7ed1a4dSandi selinger outputi_nnz = 0; 1020f83700f2Sandi selinger if (rowsleft) outputj = workj_L3; 1021d7ed1a4dSandi selinger else outputj = cj + ci_nnz; 1022d7ed1a4dSandi selinger switch (L2_nrows) { 1023d7ed1a4dSandi selinger case 1: brow_ptr[0] = inputj + inputi[inputcol[0]]; 1024d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0]+1]; 1025d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 1026d7ed1a4dSandi selinger break; 1027d7ed1a4dSandi selinger case 2: MatMatMultSymbolic_RowMergeMacro(2); break; 1028d7ed1a4dSandi selinger case 3: MatMatMultSymbolic_RowMergeMacro(3); break; 1029d7ed1a4dSandi selinger case 4: MatMatMultSymbolic_RowMergeMacro(4); break; 1030d7ed1a4dSandi selinger case 5: MatMatMultSymbolic_RowMergeMacro(5); break; 1031d7ed1a4dSandi selinger case 6: MatMatMultSymbolic_RowMergeMacro(6); break; 1032d7ed1a4dSandi selinger case 7: MatMatMultSymbolic_RowMergeMacro(7); break; 1033d7ed1a4dSandi selinger case 8: MatMatMultSymbolic_RowMergeMacro(8); break; 1034d7ed1a4dSandi selinger default: SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatMatMult logic error: Not merging 1-8 rows from L2 work array!"); 1035d7ed1a4dSandi selinger } 1036d7ed1a4dSandi selinger L2_nrows = 1; 10377660c4dbSandi selinger L2_nnz = outputi_nnz; 10387660c4dbSandi selinger worki_L2[1] = outputi_nnz; 10397660c4dbSandi selinger /* Copy to workj_L2 */ 1040d7ed1a4dSandi selinger if (rowsleft) { 10417660c4dbSandi selinger for (k=0; k<outputi_nnz; ++k) workj_L2[k] = outputj[k]; 1042d7ed1a4dSandi selinger } 1043d7ed1a4dSandi selinger } 1044d7ed1a4dSandi selinger } 1045d7ed1a4dSandi selinger } /* while (rowsleft) */ 1046d7ed1a4dSandi selinger #undef MatMatMultSymbolic_RowMergeMacro 1047d7ed1a4dSandi selinger 1048d7ed1a4dSandi selinger /* terminate current row */ 1049d7ed1a4dSandi selinger ci_nnz += outputi_nnz; 1050d7ed1a4dSandi selinger ci[i+1] = ci_nnz; 1051d7ed1a4dSandi selinger } 1052d7ed1a4dSandi selinger 1053d7ed1a4dSandi selinger /* Step 3: Create the new symbolic matrix */ 10549566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C)); 10559566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,B)); 1056d7ed1a4dSandi selinger 1057d7ed1a4dSandi selinger /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 1058d7ed1a4dSandi selinger /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 10594222ddf1SHong Zhang c = (Mat_SeqAIJ*)(C->data); 1060d7ed1a4dSandi selinger c->free_a = PETSC_TRUE; 1061d7ed1a4dSandi selinger c->free_ij = PETSC_TRUE; 1062d7ed1a4dSandi selinger c->nonew = 0; 1063d7ed1a4dSandi selinger 10644222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 1065d7ed1a4dSandi selinger 1066d7ed1a4dSandi selinger /* set MatInfo */ 1067d7ed1a4dSandi selinger afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5; 1068d7ed1a4dSandi selinger if (afill < 1.0) afill = 1.0; 10694222ddf1SHong Zhang C->info.mallocs = ndouble; 10704222ddf1SHong Zhang C->info.fill_ratio_given = fill; 10714222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1072d7ed1a4dSandi selinger 1073d7ed1a4dSandi selinger #if defined(PETSC_USE_INFO) 1074d7ed1a4dSandi selinger if (ci[am]) { 10759566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill)); 10769566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill)); 1077d7ed1a4dSandi selinger } else { 10789566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Empty matrix product\n")); 1079d7ed1a4dSandi selinger } 1080d7ed1a4dSandi selinger #endif 1081d7ed1a4dSandi selinger 1082d7ed1a4dSandi selinger /* Step 4: Free temporary work areas */ 10839566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L1)); 10849566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L2)); 10859566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L3)); 1086d7ed1a4dSandi selinger PetscFunctionReturn(0); 1087d7ed1a4dSandi selinger } 1088d7ed1a4dSandi selinger 1089cd093f1dSJed Brown /* concatenate unique entries and then sort */ 10904222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(Mat A,Mat B,PetscReal fill,Mat C) 1091cd093f1dSJed Brown { 1092cd093f1dSJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 1093cd093f1dSJed Brown const PetscInt *ai = a->i,*bi=b->i,*aj=a->j,*bj=b->j; 10948c78258cSHong Zhang PetscInt *ci,*cj,bcol; 1095cd093f1dSJed Brown PetscInt am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N; 1096cd093f1dSJed Brown PetscReal afill; 1097cd093f1dSJed Brown PetscInt i,j,ndouble = 0; 1098cd093f1dSJed Brown PetscSegBuffer seg,segrow; 1099cd093f1dSJed Brown char *seen; 1100cd093f1dSJed Brown 1101cd093f1dSJed Brown PetscFunctionBegin; 11029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am+1,&ci)); 1103cd093f1dSJed Brown ci[0] = 0; 1104cd093f1dSJed Brown 1105cd093f1dSJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 11069566063dSJacob Faibussowitsch PetscCall(PetscSegBufferCreate(sizeof(PetscInt),(PetscInt)(fill*(ai[am]+bi[bm])),&seg)); 11079566063dSJacob Faibussowitsch PetscCall(PetscSegBufferCreate(sizeof(PetscInt),100,&segrow)); 11089566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bn,&seen)); 1109cd093f1dSJed Brown 1110cd093f1dSJed Brown /* Determine ci and cj */ 1111cd093f1dSJed Brown for (i=0; i<am; i++) { 1112cd093f1dSJed Brown const PetscInt anzi = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 1113cd093f1dSJed Brown const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 1114cd093f1dSJed Brown PetscInt packlen = 0,*PETSC_RESTRICT crow; 11158c78258cSHong Zhang 1116cd093f1dSJed Brown /* Pack segrow */ 1117cd093f1dSJed Brown for (j=0; j<anzi; j++) { 1118cd093f1dSJed Brown PetscInt brow = acol[j],bjstart = bi[brow],bjend = bi[brow+1],k; 1119cd093f1dSJed Brown for (k=bjstart; k<bjend; k++) { 11208c78258cSHong Zhang bcol = bj[k]; 1121cd093f1dSJed Brown if (!seen[bcol]) { /* new entry */ 1122cd093f1dSJed Brown PetscInt *PETSC_RESTRICT slot; 11239566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(segrow,1,&slot)); 1124cd093f1dSJed Brown *slot = bcol; 1125cd093f1dSJed Brown seen[bcol] = 1; 1126cd093f1dSJed Brown packlen++; 1127cd093f1dSJed Brown } 1128cd093f1dSJed Brown } 1129cd093f1dSJed Brown } 11308c78258cSHong Zhang 11318c78258cSHong Zhang /* Check i-th diagonal entry */ 11328c78258cSHong Zhang if (C->force_diagonals && !seen[i]) { 11338c78258cSHong Zhang PetscInt *PETSC_RESTRICT slot; 11349566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(segrow,1,&slot)); 11358c78258cSHong Zhang *slot = i; 11368c78258cSHong Zhang seen[i] = 1; 11378c78258cSHong Zhang packlen++; 11388c78258cSHong Zhang } 11398c78258cSHong Zhang 11409566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(seg,packlen,&crow)); 11419566063dSJacob Faibussowitsch PetscCall(PetscSegBufferExtractTo(segrow,crow)); 11429566063dSJacob Faibussowitsch PetscCall(PetscSortInt(packlen,crow)); 1143cd093f1dSJed Brown ci[i+1] = ci[i] + packlen; 1144cd093f1dSJed Brown for (j=0; j<packlen; j++) seen[crow[j]] = 0; 1145cd093f1dSJed Brown } 11469566063dSJacob Faibussowitsch PetscCall(PetscSegBufferDestroy(&segrow)); 11479566063dSJacob Faibussowitsch PetscCall(PetscFree(seen)); 1148cd093f1dSJed Brown 1149cd093f1dSJed Brown /* Column indices are in the segmented buffer */ 11509566063dSJacob Faibussowitsch PetscCall(PetscSegBufferExtractAlloc(seg,&cj)); 11519566063dSJacob Faibussowitsch PetscCall(PetscSegBufferDestroy(&seg)); 1152cd093f1dSJed Brown 1153cd093f1dSJed Brown /* put together the new symbolic matrix */ 11549566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C)); 11559566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C,A,B)); 1156cd093f1dSJed Brown 1157cd093f1dSJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 1158cd093f1dSJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 11594222ddf1SHong Zhang c = (Mat_SeqAIJ*)(C->data); 1160cd093f1dSJed Brown c->free_a = PETSC_TRUE; 1161cd093f1dSJed Brown c->free_ij = PETSC_TRUE; 1162cd093f1dSJed Brown c->nonew = 0; 1163cd093f1dSJed Brown 11644222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 1165cd093f1dSJed Brown 1166cd093f1dSJed Brown /* set MatInfo */ 11672a09556fSStefano Zampini afill = (PetscReal)ci[am]/PetscMax(ai[am]+bi[bm],1) + 1.e-5; 1168cd093f1dSJed Brown if (afill < 1.0) afill = 1.0; 11694222ddf1SHong Zhang C->info.mallocs = ndouble; 11704222ddf1SHong Zhang C->info.fill_ratio_given = fill; 11714222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1172cd093f1dSJed Brown 1173cd093f1dSJed Brown #if defined(PETSC_USE_INFO) 1174cd093f1dSJed Brown if (ci[am]) { 11759566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill)); 11769566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill)); 1177cd093f1dSJed Brown } else { 11789566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Empty matrix product\n")); 1179cd093f1dSJed Brown } 1180cd093f1dSJed Brown #endif 1181cd093f1dSJed Brown PetscFunctionReturn(0); 1182cd093f1dSJed Brown } 1183cd093f1dSJed Brown 11846718818eSStefano Zampini PetscErrorCode MatDestroy_SeqAIJ_MatMatMultTrans(void *data) 11852128a86cSHong Zhang { 11866718818eSStefano Zampini Mat_MatMatTransMult *abt=(Mat_MatMatTransMult *)data; 11872128a86cSHong Zhang 11882128a86cSHong Zhang PetscFunctionBegin; 11899566063dSJacob Faibussowitsch PetscCall(MatTransposeColoringDestroy(&abt->matcoloring)); 11909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&abt->Bt_den)); 11919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&abt->ABt_den)); 11929566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 11932128a86cSHong Zhang PetscFunctionReturn(0); 11942128a86cSHong Zhang } 11952128a86cSHong Zhang 11964222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat C) 1197bc011b1eSHong Zhang { 119881d82fe4SHong Zhang Mat Bt; 119940192850SHong Zhang Mat_MatMatTransMult *abt; 12004222ddf1SHong Zhang Mat_Product *product = C->product; 12016718818eSStefano Zampini char *alg; 1202d2853540SHong Zhang 120381d82fe4SHong Zhang PetscFunctionBegin; 120428b400f6SJacob Faibussowitsch PetscCheck(product,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct"); 120528b400f6SJacob Faibussowitsch PetscCheck(!product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty"); 12066718818eSStefano Zampini 120781d82fe4SHong Zhang /* create symbolic Bt */ 1208*7fb60732SBarry Smith PetscCall(MatTransposeSymbolic(B,&Bt)); 12099566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(Bt,PetscAbs(A->cmap->bs),PetscAbs(B->cmap->bs))); 12109566063dSJacob Faibussowitsch PetscCall(MatSetType(Bt,((PetscObject)A)->type_name)); 121181d82fe4SHong Zhang 121281d82fe4SHong Zhang /* get symbolic C=A*Bt */ 12139566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(product->alg,&alg)); 12149566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,"sorted")); /* set algorithm for C = A*Bt */ 12159566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(A,Bt,fill,C)); 12169566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,alg)); /* resume original algorithm for ABt product */ 12179566063dSJacob Faibussowitsch PetscCall(PetscFree(alg)); 121881d82fe4SHong Zhang 1219a5b23f4aSJose E. Roman /* create a supporting struct for reuse intermediate dense matrices with matcoloring */ 12209566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 12212128a86cSHong Zhang 12226718818eSStefano Zampini product->data = abt; 12236718818eSStefano Zampini product->destroy = MatDestroy_SeqAIJ_MatMatMultTrans; 12246718818eSStefano Zampini 12254222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ; 12262128a86cSHong Zhang 12274222ddf1SHong Zhang abt->usecoloring = PETSC_FALSE; 12289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"color",&abt->usecoloring)); 122940192850SHong Zhang if (abt->usecoloring) { 1230b9af6bddSHong Zhang /* Create MatTransposeColoring from symbolic C=A*B^T */ 1231b9af6bddSHong Zhang MatTransposeColoring matcoloring; 1232335efc43SPeter Brune MatColoring coloring; 12332128a86cSHong Zhang ISColoring iscoloring; 12342128a86cSHong Zhang Mat Bt_dense,C_dense; 1235e8354b3eSHong Zhang 12364222ddf1SHong Zhang /* inode causes memory problem */ 12379566063dSJacob Faibussowitsch PetscCall(MatSetOption(C,MAT_USE_INODES,PETSC_FALSE)); 12384222ddf1SHong Zhang 12399566063dSJacob Faibussowitsch PetscCall(MatColoringCreate(C,&coloring)); 12409566063dSJacob Faibussowitsch PetscCall(MatColoringSetDistance(coloring,2)); 12419566063dSJacob Faibussowitsch PetscCall(MatColoringSetType(coloring,MATCOLORINGSL)); 12429566063dSJacob Faibussowitsch PetscCall(MatColoringSetFromOptions(coloring)); 12439566063dSJacob Faibussowitsch PetscCall(MatColoringApply(coloring,&iscoloring)); 12449566063dSJacob Faibussowitsch PetscCall(MatColoringDestroy(&coloring)); 12459566063dSJacob Faibussowitsch PetscCall(MatTransposeColoringCreate(C,iscoloring,&matcoloring)); 12462205254eSKarl Rupp 124740192850SHong Zhang abt->matcoloring = matcoloring; 12482205254eSKarl Rupp 12499566063dSJacob Faibussowitsch PetscCall(ISColoringDestroy(&iscoloring)); 12502128a86cSHong Zhang 12512128a86cSHong Zhang /* Create Bt_dense and C_dense = A*Bt_dense */ 12529566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&Bt_dense)); 12539566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Bt_dense,A->cmap->n,matcoloring->ncolors,A->cmap->n,matcoloring->ncolors)); 12549566063dSJacob Faibussowitsch PetscCall(MatSetType(Bt_dense,MATSEQDENSE)); 12559566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(Bt_dense,NULL)); 12562205254eSKarl Rupp 12572128a86cSHong Zhang Bt_dense->assembled = PETSC_TRUE; 125840192850SHong Zhang abt->Bt_den = Bt_dense; 12592128a86cSHong Zhang 12609566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&C_dense)); 12619566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C_dense,A->rmap->n,matcoloring->ncolors,A->rmap->n,matcoloring->ncolors)); 12629566063dSJacob Faibussowitsch PetscCall(MatSetType(C_dense,MATSEQDENSE)); 12639566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(C_dense,NULL)); 12642205254eSKarl Rupp 12652128a86cSHong Zhang Bt_dense->assembled = PETSC_TRUE; 126640192850SHong Zhang abt->ABt_den = C_dense; 1267f94ccd6cSHong Zhang 1268f94ccd6cSHong Zhang #if defined(PETSC_USE_INFO) 12691ce71dffSSatish Balay { 12704222ddf1SHong Zhang Mat_SeqAIJ *c = (Mat_SeqAIJ*)C->data; 12719566063dSJacob Faibussowitsch PetscCall(PetscInfo(C,"Use coloring of C=A*B^T; B^T: %" PetscInt_FMT " %" PetscInt_FMT ", Bt_dense: %" PetscInt_FMT ",%" PetscInt_FMT "; Cnz %" PetscInt_FMT " / (cm*ncolors %" PetscInt_FMT ") = %g\n",B->cmap->n,B->rmap->n,Bt_dense->rmap->n,Bt_dense->cmap->n,c->nz,A->rmap->n*matcoloring->ncolors,(double)(((PetscReal)(c->nz))/((PetscReal)(A->rmap->n*matcoloring->ncolors))))); 12721ce71dffSSatish Balay } 1273f94ccd6cSHong Zhang #endif 12742128a86cSHong Zhang } 1275e99be685SHong Zhang /* clean up */ 12769566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 12775df89d91SHong Zhang PetscFunctionReturn(0); 12785df89d91SHong Zhang } 12795df89d91SHong Zhang 12806fc122caSHong Zhang PetscErrorCode MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C) 12815df89d91SHong Zhang { 12825df89d91SHong Zhang Mat_SeqAIJ *a =(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c=(Mat_SeqAIJ*)C->data; 1283e2cac8caSJed Brown PetscInt *ai =a->i,*aj=a->j,*bi=b->i,*bj=b->j,anzi,bnzj,nexta,nextb,*acol,*bcol,brow; 128481d82fe4SHong Zhang PetscInt cm =C->rmap->n,*ci=c->i,*cj=c->j,i,j,cnzi,*ccol; 12855df89d91SHong Zhang PetscLogDouble flops=0.0; 1286aa1aec99SHong Zhang MatScalar *aa =a->a,*aval,*ba=b->a,*bval,*ca,*cval; 12876718818eSStefano Zampini Mat_MatMatTransMult *abt; 12886718818eSStefano Zampini Mat_Product *product = C->product; 12895df89d91SHong Zhang 12905df89d91SHong Zhang PetscFunctionBegin; 129128b400f6SJacob Faibussowitsch PetscCheck(product,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct"); 12926718818eSStefano Zampini abt = (Mat_MatMatTransMult *)product->data; 129328b400f6SJacob Faibussowitsch PetscCheck(abt,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct"); 129458ed3ceaSHong Zhang /* clear old values in C */ 129558ed3ceaSHong Zhang if (!c->a) { 12969566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[cm]+1,&ca)); 129758ed3ceaSHong Zhang c->a = ca; 129858ed3ceaSHong Zhang c->free_a = PETSC_TRUE; 129958ed3ceaSHong Zhang } else { 130058ed3ceaSHong Zhang ca = c->a; 13019566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca,ci[cm]+1)); 130258ed3ceaSHong Zhang } 130358ed3ceaSHong Zhang 130440192850SHong Zhang if (abt->usecoloring) { 130540192850SHong Zhang MatTransposeColoring matcoloring = abt->matcoloring; 130640192850SHong Zhang Mat Bt_dense,C_dense = abt->ABt_den; 1307c8db22f6SHong Zhang 1308b9af6bddSHong Zhang /* Get Bt_dense by Apply MatTransposeColoring to B */ 130940192850SHong Zhang Bt_dense = abt->Bt_den; 13109566063dSJacob Faibussowitsch PetscCall(MatTransColoringApplySpToDen(matcoloring,B,Bt_dense)); 1311c8db22f6SHong Zhang 1312c8db22f6SHong Zhang /* C_dense = A*Bt_dense */ 13139566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_SeqAIJ_SeqDense(A,Bt_dense,C_dense)); 1314c8db22f6SHong Zhang 13152128a86cSHong Zhang /* Recover C from C_dense */ 13169566063dSJacob Faibussowitsch PetscCall(MatTransColoringApplyDenToSp(matcoloring,C_dense,C)); 1317c8db22f6SHong Zhang PetscFunctionReturn(0); 1318c8db22f6SHong Zhang } 1319c8db22f6SHong Zhang 13201fa1209cSHong Zhang for (i=0; i<cm; i++) { 132181d82fe4SHong Zhang anzi = ai[i+1] - ai[i]; 132281d82fe4SHong Zhang acol = aj + ai[i]; 13236973769bSHong Zhang aval = aa + ai[i]; 13241fa1209cSHong Zhang cnzi = ci[i+1] - ci[i]; 13251fa1209cSHong Zhang ccol = cj + ci[i]; 13266973769bSHong Zhang cval = ca + ci[i]; 13271fa1209cSHong Zhang for (j=0; j<cnzi; j++) { 132881d82fe4SHong Zhang brow = ccol[j]; 132981d82fe4SHong Zhang bnzj = bi[brow+1] - bi[brow]; 133081d82fe4SHong Zhang bcol = bj + bi[brow]; 13316973769bSHong Zhang bval = ba + bi[brow]; 13326973769bSHong Zhang 133381d82fe4SHong Zhang /* perform sparse inner-product c(i,j)=A[i,:]*B[j,:]^T */ 133481d82fe4SHong Zhang nexta = 0; nextb = 0; 133581d82fe4SHong Zhang while (nexta<anzi && nextb<bnzj) { 13367b6d5e96SMark Adams while (nexta < anzi && acol[nexta] < bcol[nextb]) nexta++; 133781d82fe4SHong Zhang if (nexta == anzi) break; 13387b6d5e96SMark Adams while (nextb < bnzj && acol[nexta] > bcol[nextb]) nextb++; 133981d82fe4SHong Zhang if (nextb == bnzj) break; 134081d82fe4SHong Zhang if (acol[nexta] == bcol[nextb]) { 13416973769bSHong Zhang cval[j] += aval[nexta]*bval[nextb]; 134281d82fe4SHong Zhang nexta++; nextb++; 134381d82fe4SHong Zhang flops += 2; 13441fa1209cSHong Zhang } 13451fa1209cSHong Zhang } 134681d82fe4SHong Zhang } 134781d82fe4SHong Zhang } 13489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 13499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 13509566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 13515df89d91SHong Zhang PetscFunctionReturn(0); 13525df89d91SHong Zhang } 13535df89d91SHong Zhang 13546718818eSStefano Zampini PetscErrorCode MatDestroy_SeqAIJ_MatTransMatMult(void *data) 13556d373c3eSHong Zhang { 13566718818eSStefano Zampini Mat_MatTransMatMult *atb = (Mat_MatTransMatMult*)data; 13576d373c3eSHong Zhang 13586d373c3eSHong Zhang PetscFunctionBegin; 13599566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->At)); 13601baa6e33SBarry Smith if (atb->destroy) PetscCall((*atb->destroy)(atb->data)); 13619566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 13626d373c3eSHong Zhang PetscFunctionReturn(0); 13636d373c3eSHong Zhang } 13646d373c3eSHong Zhang 13654222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat C) 13665df89d91SHong Zhang { 1367089a957eSStefano Zampini Mat At = NULL; 13684222ddf1SHong Zhang Mat_Product *product = C->product; 1369089a957eSStefano Zampini PetscBool flg,def,square; 1370bc011b1eSHong Zhang 1371bc011b1eSHong Zhang PetscFunctionBegin; 1372089a957eSStefano Zampini MatCheckProduct(C,4); 1373b94d7dedSBarry Smith square = (PetscBool)(A == B && A->symmetric == PETSC_BOOL3_TRUE); 13744222ddf1SHong Zhang /* outerproduct */ 13759566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"outerproduct",&flg)); 13764222ddf1SHong Zhang if (flg) { 1377bc011b1eSHong Zhang /* create symbolic At */ 1378089a957eSStefano Zampini if (!square) { 1379*7fb60732SBarry Smith PetscCall(MatTransposeSymbolic(A,&At)); 13809566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(At,PetscAbs(A->cmap->bs),PetscAbs(B->cmap->bs))); 13819566063dSJacob Faibussowitsch PetscCall(MatSetType(At,((PetscObject)A)->type_name)); 1382089a957eSStefano Zampini } 1383bc011b1eSHong Zhang /* get symbolic C=At*B */ 13849566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,"sorted")); 13859566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At,B,fill,C)); 1386bc011b1eSHong Zhang 1387bc011b1eSHong Zhang /* clean up */ 1388089a957eSStefano Zampini if (!square) { 13899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&At)); 1390089a957eSStefano Zampini } 13916d373c3eSHong Zhang 13924222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ; /* outerproduct */ 13939566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,"outerproduct")); 13944222ddf1SHong Zhang PetscFunctionReturn(0); 13954222ddf1SHong Zhang } 13964222ddf1SHong Zhang 13974222ddf1SHong Zhang /* matmatmult */ 13989566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&def)); 13999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"at*b",&flg)); 1400089a957eSStefano Zampini if (flg || def) { 14014222ddf1SHong Zhang Mat_MatTransMatMult *atb; 14024222ddf1SHong Zhang 140328b400f6SJacob Faibussowitsch PetscCheck(!product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty"); 14049566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 1405089a957eSStefano Zampini if (!square) { 1406acd337a6SBarry Smith PetscCall(MatTranspose(A,MAT_INITIAL_MATRIX,&At)); 1407089a957eSStefano Zampini } 14089566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,"sorted")); 14099566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At,B,fill,C)); 14109566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,"at*b")); 14116718818eSStefano Zampini product->data = atb; 14126718818eSStefano Zampini product->destroy = MatDestroy_SeqAIJ_MatTransMatMult; 14134222ddf1SHong Zhang atb->At = At; 14144222ddf1SHong Zhang 14154222ddf1SHong Zhang C->ops->mattransposemultnumeric = NULL; /* see MatProductNumeric_AtB_SeqAIJ_SeqAIJ */ 14164222ddf1SHong Zhang PetscFunctionReturn(0); 14174222ddf1SHong Zhang } 14184222ddf1SHong Zhang 14194222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Mat Product Algorithm is not supported"); 1420bc011b1eSHong Zhang } 1421bc011b1eSHong Zhang 142275648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C) 1423bc011b1eSHong Zhang { 14240fbc74f4SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c=(Mat_SeqAIJ*)C->data; 1425d0f46423SBarry Smith PetscInt am=A->rmap->n,anzi,*ai=a->i,*aj=a->j,*bi=b->i,*bj,bnzi,nextb; 1426d0f46423SBarry Smith PetscInt cm=C->rmap->n,*ci=c->i,*cj=c->j,crow,*cjj,i,j,k; 1427d13dce4bSSatish Balay PetscLogDouble flops=0.0; 1428aa1aec99SHong Zhang MatScalar *aa=a->a,*ba,*ca,*caj; 1429bc011b1eSHong Zhang 1430bc011b1eSHong Zhang PetscFunctionBegin; 1431aa1aec99SHong Zhang if (!c->a) { 14329566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[cm]+1,&ca)); 14332205254eSKarl Rupp 1434aa1aec99SHong Zhang c->a = ca; 1435aa1aec99SHong Zhang c->free_a = PETSC_TRUE; 1436aa1aec99SHong Zhang } else { 1437aa1aec99SHong Zhang ca = c->a; 14389566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca,ci[cm])); 1439aa1aec99SHong Zhang } 1440bc011b1eSHong Zhang 1441bc011b1eSHong Zhang /* compute A^T*B using outer product (A^T)[:,i]*B[i,:] */ 1442bc011b1eSHong Zhang for (i=0; i<am; i++) { 1443bc011b1eSHong Zhang bj = b->j + bi[i]; 1444bc011b1eSHong Zhang ba = b->a + bi[i]; 1445bc011b1eSHong Zhang bnzi = bi[i+1] - bi[i]; 1446bc011b1eSHong Zhang anzi = ai[i+1] - ai[i]; 1447bc011b1eSHong Zhang for (j=0; j<anzi; j++) { 1448bc011b1eSHong Zhang nextb = 0; 14490fbc74f4SHong Zhang crow = *aj++; 1450bc011b1eSHong Zhang cjj = cj + ci[crow]; 1451bc011b1eSHong Zhang caj = ca + ci[crow]; 1452bc011b1eSHong Zhang /* perform sparse axpy operation. Note cjj includes bj. */ 1453bc011b1eSHong Zhang for (k=0; nextb<bnzi; k++) { 14540fbc74f4SHong Zhang if (cjj[k] == *(bj+nextb)) { /* ccol == bcol */ 14550fbc74f4SHong Zhang caj[k] += (*aa)*(*(ba+nextb)); 1456bc011b1eSHong Zhang nextb++; 1457bc011b1eSHong Zhang } 1458bc011b1eSHong Zhang } 1459bc011b1eSHong Zhang flops += 2*bnzi; 14600fbc74f4SHong Zhang aa++; 1461bc011b1eSHong Zhang } 1462bc011b1eSHong Zhang } 1463bc011b1eSHong Zhang 1464bc011b1eSHong Zhang /* Assemble the final matrix and clean up */ 14659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY)); 14669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY)); 14679566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 1468bc011b1eSHong Zhang PetscFunctionReturn(0); 1469bc011b1eSHong Zhang } 14709123193aSHong Zhang 14714222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqDense(Mat A,Mat B,PetscReal fill,Mat C) 14729123193aSHong Zhang { 14739123193aSHong Zhang PetscFunctionBegin; 14749566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqDense_SeqDense(A,B,0.0,C)); 14754222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqDense; 14769123193aSHong Zhang PetscFunctionReturn(0); 14779123193aSHong Zhang } 14789123193aSHong Zhang 147993aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat A,Mat B,Mat C,const PetscBool add) 14809123193aSHong Zhang { 1481f32d5d43SBarry Smith Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data; 14821ca9667aSStefano Zampini PetscScalar *c,r1,r2,r3,r4,*c1,*c2,*c3,*c4; 1483a4af7ca8SStefano Zampini const PetscScalar *aa,*b,*b1,*b2,*b3,*b4,*av; 1484daf57211SHong Zhang const PetscInt *aj; 148575f6d85dSStefano Zampini PetscInt cm=C->rmap->n,cn=B->cmap->n,bm,am=A->rmap->n; 148675f6d85dSStefano Zampini PetscInt clda; 148775f6d85dSStefano Zampini PetscInt am4,bm4,col,i,j,n; 14889123193aSHong Zhang 14899123193aSHong Zhang PetscFunctionBegin; 1490f32d5d43SBarry Smith if (!cm || !cn) PetscFunctionReturn(0); 14919566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A,&av)); 149293aa15f2SStefano Zampini if (add) { 14939566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(C,&c)); 149493aa15f2SStefano Zampini } else { 14959566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C,&c)); 149693aa15f2SStefano Zampini } 14979566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B,&b)); 14989566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B,&bm)); 14999566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(C,&clda)); 150075f6d85dSStefano Zampini am4 = 4*clda; 150175f6d85dSStefano Zampini bm4 = 4*bm; 1502f32d5d43SBarry Smith b1 = b; b2 = b1 + bm; b3 = b2 + bm; b4 = b3 + bm; 15031ca9667aSStefano Zampini c1 = c; c2 = c1 + clda; c3 = c2 + clda; c4 = c3 + clda; 15041ca9667aSStefano Zampini for (col=0; col<(cn/4)*4; col += 4) { /* over columns of C */ 15051ca9667aSStefano Zampini for (i=0; i<am; i++) { /* over rows of A in those columns */ 1506f32d5d43SBarry Smith r1 = r2 = r3 = r4 = 0.0; 1507f32d5d43SBarry Smith n = a->i[i+1] - a->i[i]; 1508f32d5d43SBarry Smith aj = a->j + a->i[i]; 1509a4af7ca8SStefano Zampini aa = av + a->i[i]; 1510f32d5d43SBarry Smith for (j=0; j<n; j++) { 15111ca9667aSStefano Zampini const PetscScalar aatmp = aa[j]; 15121ca9667aSStefano Zampini const PetscInt ajtmp = aj[j]; 1513730858b9SHong Zhang r1 += aatmp*b1[ajtmp]; 1514730858b9SHong Zhang r2 += aatmp*b2[ajtmp]; 1515730858b9SHong Zhang r3 += aatmp*b3[ajtmp]; 1516730858b9SHong Zhang r4 += aatmp*b4[ajtmp]; 15179123193aSHong Zhang } 151893aa15f2SStefano Zampini if (add) { 151987753ddeSHong Zhang c1[i] += r1; 152087753ddeSHong Zhang c2[i] += r2; 152187753ddeSHong Zhang c3[i] += r3; 152287753ddeSHong Zhang c4[i] += r4; 152393aa15f2SStefano Zampini } else { 152493aa15f2SStefano Zampini c1[i] = r1; 152593aa15f2SStefano Zampini c2[i] = r2; 152693aa15f2SStefano Zampini c3[i] = r3; 152793aa15f2SStefano Zampini c4[i] = r4; 152893aa15f2SStefano Zampini } 1529f32d5d43SBarry Smith } 1530730858b9SHong Zhang b1 += bm4; b2 += bm4; b3 += bm4; b4 += bm4; 1531730858b9SHong Zhang c1 += am4; c2 += am4; c3 += am4; c4 += am4; 1532f32d5d43SBarry Smith } 153393aa15f2SStefano Zampini /* process remaining columns */ 153493aa15f2SStefano Zampini if (col != cn) { 153593aa15f2SStefano Zampini PetscInt rc = cn-col; 153693aa15f2SStefano Zampini 153793aa15f2SStefano Zampini if (rc == 1) { 153893aa15f2SStefano Zampini for (i=0; i<am; i++) { 1539f32d5d43SBarry Smith r1 = 0.0; 1540f32d5d43SBarry Smith n = a->i[i+1] - a->i[i]; 1541f32d5d43SBarry Smith aj = a->j + a->i[i]; 1542a4af7ca8SStefano Zampini aa = av + a->i[i]; 154393aa15f2SStefano Zampini for (j=0; j<n; j++) r1 += aa[j]*b1[aj[j]]; 154493aa15f2SStefano Zampini if (add) c1[i] += r1; 154593aa15f2SStefano Zampini else c1[i] = r1; 154693aa15f2SStefano Zampini } 154793aa15f2SStefano Zampini } else if (rc == 2) { 154893aa15f2SStefano Zampini for (i=0; i<am; i++) { 154993aa15f2SStefano Zampini r1 = r2 = 0.0; 155093aa15f2SStefano Zampini n = a->i[i+1] - a->i[i]; 155193aa15f2SStefano Zampini aj = a->j + a->i[i]; 155293aa15f2SStefano Zampini aa = av + a->i[i]; 1553f32d5d43SBarry Smith for (j=0; j<n; j++) { 155493aa15f2SStefano Zampini const PetscScalar aatmp = aa[j]; 155593aa15f2SStefano Zampini const PetscInt ajtmp = aj[j]; 155693aa15f2SStefano Zampini r1 += aatmp*b1[ajtmp]; 155793aa15f2SStefano Zampini r2 += aatmp*b2[ajtmp]; 1558f32d5d43SBarry Smith } 155993aa15f2SStefano Zampini if (add) { 156087753ddeSHong Zhang c1[i] += r1; 156193aa15f2SStefano Zampini c2[i] += r2; 156293aa15f2SStefano Zampini } else { 156393aa15f2SStefano Zampini c1[i] = r1; 156493aa15f2SStefano Zampini c2[i] = r2; 1565f32d5d43SBarry Smith } 156693aa15f2SStefano Zampini } 156793aa15f2SStefano Zampini } else { 156893aa15f2SStefano Zampini for (i=0; i<am; i++) { 156993aa15f2SStefano Zampini r1 = r2 = r3 = 0.0; 157093aa15f2SStefano Zampini n = a->i[i+1] - a->i[i]; 157193aa15f2SStefano Zampini aj = a->j + a->i[i]; 157293aa15f2SStefano Zampini aa = av + a->i[i]; 157393aa15f2SStefano Zampini for (j=0; j<n; j++) { 157493aa15f2SStefano Zampini const PetscScalar aatmp = aa[j]; 157593aa15f2SStefano Zampini const PetscInt ajtmp = aj[j]; 157693aa15f2SStefano Zampini r1 += aatmp*b1[ajtmp]; 157793aa15f2SStefano Zampini r2 += aatmp*b2[ajtmp]; 157893aa15f2SStefano Zampini r3 += aatmp*b3[ajtmp]; 157993aa15f2SStefano Zampini } 158093aa15f2SStefano Zampini if (add) { 158193aa15f2SStefano Zampini c1[i] += r1; 158293aa15f2SStefano Zampini c2[i] += r2; 158393aa15f2SStefano Zampini c3[i] += r3; 158493aa15f2SStefano Zampini } else { 158593aa15f2SStefano Zampini c1[i] = r1; 158693aa15f2SStefano Zampini c2[i] = r2; 158793aa15f2SStefano Zampini c3[i] = r3; 158893aa15f2SStefano Zampini } 158993aa15f2SStefano Zampini } 159093aa15f2SStefano Zampini } 1591f32d5d43SBarry Smith } 15929566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(cn*(2.0*a->nz))); 159393aa15f2SStefano Zampini if (add) { 15949566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(C,&c)); 159593aa15f2SStefano Zampini } else { 15969566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C,&c)); 159793aa15f2SStefano Zampini } 15989566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B,&b)); 15999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A,&av)); 1600f32d5d43SBarry Smith PetscFunctionReturn(0); 1601f32d5d43SBarry Smith } 1602f32d5d43SBarry Smith 160387753ddeSHong Zhang PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqDense(Mat A,Mat B,Mat C) 1604f32d5d43SBarry Smith { 1605f32d5d43SBarry Smith PetscFunctionBegin; 160608401ef6SPierre Jolivet PetscCheck(B->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number columns in A %" PetscInt_FMT " not equal rows in B %" PetscInt_FMT,A->cmap->n,B->rmap->n); 160708401ef6SPierre Jolivet PetscCheck(A->rmap->n == C->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows in C %" PetscInt_FMT " not equal rows in A %" PetscInt_FMT,C->rmap->n,A->rmap->n); 160808401ef6SPierre Jolivet PetscCheck(B->cmap->n == C->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number columns in B %" PetscInt_FMT " not equal columns in C %" PetscInt_FMT,B->cmap->n,C->cmap->n); 16094324174eSBarry Smith 16109566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(A,B,C,PETSC_FALSE)); 16119123193aSHong Zhang PetscFunctionReturn(0); 16129123193aSHong Zhang } 1613b1683b59SHong Zhang 16144222ddf1SHong Zhang /* ------------------------------------------------------- */ 16154222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AB(Mat C) 16164222ddf1SHong Zhang { 16174222ddf1SHong Zhang PetscFunctionBegin; 16184222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqDense; 16194222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 16204222ddf1SHong Zhang PetscFunctionReturn(0); 16214222ddf1SHong Zhang } 16224222ddf1SHong Zhang 16236718818eSStefano Zampini PETSC_INTERN PetscErrorCode MatTMatTMultSymbolic_SeqAIJ_SeqDense(Mat,Mat,PetscReal,Mat); 16246718818eSStefano Zampini 16254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(Mat C) 16264222ddf1SHong Zhang { 16274222ddf1SHong Zhang PetscFunctionBegin; 16286718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense; 16294222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 16306718818eSStefano Zampini PetscFunctionReturn(0); 16316718818eSStefano Zampini } 16326718818eSStefano Zampini 16336718818eSStefano Zampini static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(Mat C) 16346718818eSStefano Zampini { 16356718818eSStefano Zampini PetscFunctionBegin; 16366718818eSStefano Zampini C->ops->mattransposemultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense; 16376718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_ABt; 16384222ddf1SHong Zhang PetscFunctionReturn(0); 16394222ddf1SHong Zhang } 16404222ddf1SHong Zhang 16414222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense(Mat C) 16424222ddf1SHong Zhang { 16434222ddf1SHong Zhang Mat_Product *product = C->product; 16444222ddf1SHong Zhang 16454222ddf1SHong Zhang PetscFunctionBegin; 16464222ddf1SHong Zhang switch (product->type) { 16474222ddf1SHong Zhang case MATPRODUCT_AB: 16489566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AB(C)); 16494222ddf1SHong Zhang break; 16504222ddf1SHong Zhang case MATPRODUCT_AtB: 16519566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(C)); 16524222ddf1SHong Zhang break; 16536718818eSStefano Zampini case MATPRODUCT_ABt: 16549566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(C)); 16554222ddf1SHong Zhang break; 16564222ddf1SHong Zhang default: 16576718818eSStefano Zampini break; 16584222ddf1SHong Zhang } 16594222ddf1SHong Zhang PetscFunctionReturn(0); 16604222ddf1SHong Zhang } 16614222ddf1SHong Zhang /* ------------------------------------------------------- */ 16624222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(Mat C) 16634222ddf1SHong Zhang { 16644222ddf1SHong Zhang Mat_Product *product = C->product; 16654222ddf1SHong Zhang Mat A = product->A; 16664222ddf1SHong Zhang PetscBool baij; 16674222ddf1SHong Zhang 16684222ddf1SHong Zhang PetscFunctionBegin; 16699566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQBAIJ,&baij)); 16704222ddf1SHong Zhang if (!baij) { /* A is seqsbaij */ 16714222ddf1SHong Zhang PetscBool sbaij; 16729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQSBAIJ,&sbaij)); 167328b400f6SJacob Faibussowitsch PetscCheck(sbaij,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"Mat must be either seqbaij or seqsbaij format"); 16744222ddf1SHong Zhang 16754222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqSBAIJ_SeqDense; 16764222ddf1SHong Zhang } else { /* A is seqbaij */ 16774222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqBAIJ_SeqDense; 16784222ddf1SHong Zhang } 16794222ddf1SHong Zhang 16804222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 16814222ddf1SHong Zhang PetscFunctionReturn(0); 16824222ddf1SHong Zhang } 16834222ddf1SHong Zhang 16844222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense(Mat C) 16854222ddf1SHong Zhang { 16864222ddf1SHong Zhang Mat_Product *product = C->product; 16874222ddf1SHong Zhang 16884222ddf1SHong Zhang PetscFunctionBegin; 16896718818eSStefano Zampini MatCheckProduct(C,1); 169028b400f6SJacob Faibussowitsch PetscCheck(product->A,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing A"); 1691b94d7dedSBarry Smith if (product->type == MATPRODUCT_AB || (product->type == MATPRODUCT_AtB && product->A->symmetric == PETSC_BOOL3_TRUE)) PetscCall(MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(C)); 16924222ddf1SHong Zhang PetscFunctionReturn(0); 16934222ddf1SHong Zhang } 16946718818eSStefano Zampini 16954222ddf1SHong Zhang /* ------------------------------------------------------- */ 16964222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ_AB(Mat C) 16974222ddf1SHong Zhang { 16984222ddf1SHong Zhang PetscFunctionBegin; 16994222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqAIJ; 17004222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 17014222ddf1SHong Zhang PetscFunctionReturn(0); 17024222ddf1SHong Zhang } 17034222ddf1SHong Zhang 17044222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ(Mat C) 17054222ddf1SHong Zhang { 17064222ddf1SHong Zhang Mat_Product *product = C->product; 17074222ddf1SHong Zhang 17084222ddf1SHong Zhang PetscFunctionBegin; 17094222ddf1SHong Zhang if (product->type == MATPRODUCT_AB) { 17109566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqDense_SeqAIJ_AB(C)); 17116718818eSStefano Zampini } 17124222ddf1SHong Zhang PetscFunctionReturn(0); 17134222ddf1SHong Zhang } 17144222ddf1SHong Zhang /* ------------------------------------------------------- */ 17154222ddf1SHong Zhang 1716b9af6bddSHong Zhang PetscErrorCode MatTransColoringApplySpToDen_SeqAIJ(MatTransposeColoring coloring,Mat B,Mat Btdense) 1717c8db22f6SHong Zhang { 17182f5f1f90SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ*)B->data; 17192f5f1f90SHong Zhang Mat_SeqDense *btdense = (Mat_SeqDense*)Btdense->data; 17202f5f1f90SHong Zhang PetscInt *bi = b->i,*bj=b->j; 17212f5f1f90SHong Zhang PetscInt m = Btdense->rmap->n,n=Btdense->cmap->n,j,k,l,col,anz,*btcol,brow,ncolumns; 17222f5f1f90SHong Zhang MatScalar *btval,*btval_den,*ba=b->a; 17232f5f1f90SHong Zhang PetscInt *columns=coloring->columns,*colorforcol=coloring->colorforcol,ncolors=coloring->ncolors; 1724c8db22f6SHong Zhang 1725c8db22f6SHong Zhang PetscFunctionBegin; 17262f5f1f90SHong Zhang btval_den=btdense->v; 17279566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(btval_den,m*n)); 17282f5f1f90SHong Zhang for (k=0; k<ncolors; k++) { 17292f5f1f90SHong Zhang ncolumns = coloring->ncolumns[k]; 17302f5f1f90SHong Zhang for (l=0; l<ncolumns; l++) { /* insert a row of B to a column of Btdense */ 1731d2853540SHong Zhang col = *(columns + colorforcol[k] + l); 17322f5f1f90SHong Zhang btcol = bj + bi[col]; 17332f5f1f90SHong Zhang btval = ba + bi[col]; 17342f5f1f90SHong Zhang anz = bi[col+1] - bi[col]; 1735d2853540SHong Zhang for (j=0; j<anz; j++) { 17362f5f1f90SHong Zhang brow = btcol[j]; 17372f5f1f90SHong Zhang btval_den[brow] = btval[j]; 1738c8db22f6SHong Zhang } 1739c8db22f6SHong Zhang } 17402f5f1f90SHong Zhang btval_den += m; 1741c8db22f6SHong Zhang } 1742c8db22f6SHong Zhang PetscFunctionReturn(0); 1743c8db22f6SHong Zhang } 1744c8db22f6SHong Zhang 1745b9af6bddSHong Zhang PetscErrorCode MatTransColoringApplyDenToSp_SeqAIJ(MatTransposeColoring matcoloring,Mat Cden,Mat Csp) 17468972f759SHong Zhang { 1747b2d2b04fSHong Zhang Mat_SeqAIJ *csp = (Mat_SeqAIJ*)Csp->data; 17481683a169SBarry Smith const PetscScalar *ca_den,*ca_den_ptr; 17491683a169SBarry Smith PetscScalar *ca=csp->a; 1750f99a636bSHong Zhang PetscInt k,l,m=Cden->rmap->n,ncolors=matcoloring->ncolors; 1751e88777f2SHong Zhang PetscInt brows=matcoloring->brows,*den2sp=matcoloring->den2sp; 1752077f23c2SHong Zhang PetscInt nrows,*row,*idx; 1753077f23c2SHong Zhang PetscInt *rows=matcoloring->rows,*colorforrow=matcoloring->colorforrow; 17548972f759SHong Zhang 17558972f759SHong Zhang PetscFunctionBegin; 17569566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(Cden,&ca_den)); 1757f99a636bSHong Zhang 1758077f23c2SHong Zhang if (brows > 0) { 1759077f23c2SHong Zhang PetscInt *lstart,row_end,row_start; 1760980ae229SHong Zhang lstart = matcoloring->lstart; 17619566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(lstart,ncolors)); 1762eeb4fd02SHong Zhang 1763077f23c2SHong Zhang row_end = brows; 1764eeb4fd02SHong Zhang if (row_end > m) row_end = m; 1765077f23c2SHong Zhang for (row_start=0; row_start<m; row_start+=brows) { /* loop over row blocks of Csp */ 1766077f23c2SHong Zhang ca_den_ptr = ca_den; 1767980ae229SHong Zhang for (k=0; k<ncolors; k++) { /* loop over colors (columns of Cden) */ 1768eeb4fd02SHong Zhang nrows = matcoloring->nrows[k]; 1769eeb4fd02SHong Zhang row = rows + colorforrow[k]; 1770eeb4fd02SHong Zhang idx = den2sp + colorforrow[k]; 1771eeb4fd02SHong Zhang for (l=lstart[k]; l<nrows; l++) { 1772eeb4fd02SHong Zhang if (row[l] >= row_end) { 1773eeb4fd02SHong Zhang lstart[k] = l; 1774eeb4fd02SHong Zhang break; 1775eeb4fd02SHong Zhang } else { 1776077f23c2SHong Zhang ca[idx[l]] = ca_den_ptr[row[l]]; 1777eeb4fd02SHong Zhang } 1778eeb4fd02SHong Zhang } 1779077f23c2SHong Zhang ca_den_ptr += m; 1780eeb4fd02SHong Zhang } 1781077f23c2SHong Zhang row_end += brows; 1782eeb4fd02SHong Zhang if (row_end > m) row_end = m; 1783eeb4fd02SHong Zhang } 1784077f23c2SHong Zhang } else { /* non-blocked impl: loop over columns of Csp - slow if Csp is large */ 1785077f23c2SHong Zhang ca_den_ptr = ca_den; 1786077f23c2SHong Zhang for (k=0; k<ncolors; k++) { 1787077f23c2SHong Zhang nrows = matcoloring->nrows[k]; 1788077f23c2SHong Zhang row = rows + colorforrow[k]; 1789077f23c2SHong Zhang idx = den2sp + colorforrow[k]; 1790077f23c2SHong Zhang for (l=0; l<nrows; l++) { 1791077f23c2SHong Zhang ca[idx[l]] = ca_den_ptr[row[l]]; 1792077f23c2SHong Zhang } 1793077f23c2SHong Zhang ca_den_ptr += m; 1794077f23c2SHong Zhang } 1795f99a636bSHong Zhang } 1796f99a636bSHong Zhang 17979566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(Cden,&ca_den)); 1798f99a636bSHong Zhang #if defined(PETSC_USE_INFO) 1799077f23c2SHong Zhang if (matcoloring->brows > 0) { 18009566063dSJacob Faibussowitsch PetscCall(PetscInfo(Csp,"Loop over %" PetscInt_FMT " row blocks for den2sp\n",brows)); 1801e88777f2SHong Zhang } else { 18029566063dSJacob Faibussowitsch PetscCall(PetscInfo(Csp,"Loop over colors/columns of Cden, inefficient for large sparse matrix product \n")); 1803e88777f2SHong Zhang } 1804f99a636bSHong Zhang #endif 18058972f759SHong Zhang PetscFunctionReturn(0); 18068972f759SHong Zhang } 18078972f759SHong Zhang 1808b9af6bddSHong Zhang PetscErrorCode MatTransposeColoringCreate_SeqAIJ(Mat mat,ISColoring iscoloring,MatTransposeColoring c) 1809b1683b59SHong Zhang { 1810e88777f2SHong Zhang PetscInt i,n,nrows,Nbs,j,k,m,ncols,col,cm; 18111a83f524SJed Brown const PetscInt *is,*ci,*cj,*row_idx; 1812b28d80bdSHong Zhang PetscInt nis = iscoloring->n,*rowhit,bs = 1; 1813b1683b59SHong Zhang IS *isa; 1814b28d80bdSHong Zhang Mat_SeqAIJ *csp = (Mat_SeqAIJ*)mat->data; 1815e88777f2SHong Zhang PetscInt *colorforrow,*rows,*rows_i,*idxhit,*spidx,*den2sp,*den2sp_i; 1816e88777f2SHong Zhang PetscInt *colorforcol,*columns,*columns_i,brows; 1817e88777f2SHong Zhang PetscBool flg; 1818b1683b59SHong Zhang 1819b1683b59SHong Zhang PetscFunctionBegin; 18209566063dSJacob Faibussowitsch PetscCall(ISColoringGetIS(iscoloring,PETSC_USE_POINTER,PETSC_IGNORE,&isa)); 1821e99be685SHong Zhang 18227ecccc15SHong Zhang /* bs >1 is not being tested yet! */ 1823e88777f2SHong Zhang Nbs = mat->cmap->N/bs; 1824b1683b59SHong Zhang c->M = mat->rmap->N/bs; /* set total rows, columns and local rows */ 1825e88777f2SHong Zhang c->N = Nbs; 1826e88777f2SHong Zhang c->m = c->M; 1827b1683b59SHong Zhang c->rstart = 0; 1828e88777f2SHong Zhang c->brows = 100; 1829b1683b59SHong Zhang 1830b1683b59SHong Zhang c->ncolors = nis; 18319566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nis,&c->ncolumns,nis,&c->nrows,nis+1,&colorforrow)); 18329566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(csp->nz+1,&rows)); 18339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(csp->nz+1,&den2sp)); 1834e88777f2SHong Zhang 1835e88777f2SHong Zhang brows = c->brows; 18369566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL,NULL,"-matden2sp_brows",&brows,&flg)); 1837e88777f2SHong Zhang if (flg) c->brows = brows; 1838eeb4fd02SHong Zhang if (brows > 0) { 18399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nis+1,&c->lstart)); 1840e88777f2SHong Zhang } 18412205254eSKarl Rupp 1842d2853540SHong Zhang colorforrow[0] = 0; 1843d2853540SHong Zhang rows_i = rows; 1844f99a636bSHong Zhang den2sp_i = den2sp; 1845b1683b59SHong Zhang 18469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nis+1,&colorforcol)); 18479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nbs+1,&columns)); 18482205254eSKarl Rupp 1849d2853540SHong Zhang colorforcol[0] = 0; 1850d2853540SHong Zhang columns_i = columns; 1851d2853540SHong Zhang 1852077f23c2SHong Zhang /* get column-wise storage of mat */ 18539566063dSJacob Faibussowitsch PetscCall(MatGetColumnIJ_SeqAIJ_Color(mat,0,PETSC_FALSE,PETSC_FALSE,&ncols,&ci,&cj,&spidx,NULL)); 1854b1683b59SHong Zhang 1855b28d80bdSHong Zhang cm = c->m; 18569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cm+1,&rowhit)); 18579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cm+1,&idxhit)); 1858f99a636bSHong Zhang for (i=0; i<nis; i++) { /* loop over color */ 18599566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isa[i],&n)); 18609566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isa[i],&is)); 18612205254eSKarl Rupp 1862b1683b59SHong Zhang c->ncolumns[i] = n; 18631baa6e33SBarry Smith if (n) PetscCall(PetscArraycpy(columns_i,is,n)); 1864d2853540SHong Zhang colorforcol[i+1] = colorforcol[i] + n; 1865d2853540SHong Zhang columns_i += n; 1866b1683b59SHong Zhang 1867b1683b59SHong Zhang /* fast, crude version requires O(N*N) work */ 18689566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rowhit,cm)); 1869e99be685SHong Zhang 1870b7caf3d6SHong Zhang for (j=0; j<n; j++) { /* loop over columns*/ 1871b1683b59SHong Zhang col = is[j]; 1872d2853540SHong Zhang row_idx = cj + ci[col]; 1873b1683b59SHong Zhang m = ci[col+1] - ci[col]; 1874b7caf3d6SHong Zhang for (k=0; k<m; k++) { /* loop over columns marking them in rowhit */ 1875e99be685SHong Zhang idxhit[*row_idx] = spidx[ci[col] + k]; 1876d2853540SHong Zhang rowhit[*row_idx++] = col + 1; 1877b1683b59SHong Zhang } 1878b1683b59SHong Zhang } 1879b1683b59SHong Zhang /* count the number of hits */ 1880b1683b59SHong Zhang nrows = 0; 1881e8354b3eSHong Zhang for (j=0; j<cm; j++) { 1882b1683b59SHong Zhang if (rowhit[j]) nrows++; 1883b1683b59SHong Zhang } 1884b1683b59SHong Zhang c->nrows[i] = nrows; 1885d2853540SHong Zhang colorforrow[i+1] = colorforrow[i] + nrows; 1886d2853540SHong Zhang 1887b1683b59SHong Zhang nrows = 0; 1888b7caf3d6SHong Zhang for (j=0; j<cm; j++) { /* loop over rows */ 1889b1683b59SHong Zhang if (rowhit[j]) { 1890d2853540SHong Zhang rows_i[nrows] = j; 189112b89a43SHong Zhang den2sp_i[nrows] = idxhit[j]; 1892b1683b59SHong Zhang nrows++; 1893b1683b59SHong Zhang } 1894b1683b59SHong Zhang } 1895e88777f2SHong Zhang den2sp_i += nrows; 1896077f23c2SHong Zhang 18979566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isa[i],&is)); 1898f99a636bSHong Zhang rows_i += nrows; 1899b1683b59SHong Zhang } 19009566063dSJacob Faibussowitsch PetscCall(MatRestoreColumnIJ_SeqAIJ_Color(mat,0,PETSC_FALSE,PETSC_FALSE,&ncols,&ci,&cj,&spidx,NULL)); 19019566063dSJacob Faibussowitsch PetscCall(PetscFree(rowhit)); 19029566063dSJacob Faibussowitsch PetscCall(ISColoringRestoreIS(iscoloring,PETSC_USE_POINTER,&isa)); 19032c71b3e2SJacob Faibussowitsch PetscCheck(csp->nz == colorforrow[nis],PETSC_COMM_SELF,PETSC_ERR_PLIB,"csp->nz %" PetscInt_FMT " != colorforrow[nis] %" PetscInt_FMT,csp->nz,colorforrow[nis]); 1904b28d80bdSHong Zhang 1905d2853540SHong Zhang c->colorforrow = colorforrow; 1906d2853540SHong Zhang c->rows = rows; 1907f99a636bSHong Zhang c->den2sp = den2sp; 1908d2853540SHong Zhang c->colorforcol = colorforcol; 1909d2853540SHong Zhang c->columns = columns; 19102205254eSKarl Rupp 19119566063dSJacob Faibussowitsch PetscCall(PetscFree(idxhit)); 1912b1683b59SHong Zhang PetscFunctionReturn(0); 1913b1683b59SHong Zhang } 1914d013fc79Sandi selinger 19154222ddf1SHong Zhang /* --------------------------------------------------------------- */ 19164222ddf1SHong Zhang static PetscErrorCode MatProductNumeric_AtB_SeqAIJ_SeqAIJ(Mat C) 1917df97dc6dSFande Kong { 19184222ddf1SHong Zhang Mat_Product *product = C->product; 19194222ddf1SHong Zhang Mat A=product->A,B=product->B; 19204222ddf1SHong Zhang 1921df97dc6dSFande Kong PetscFunctionBegin; 19224222ddf1SHong Zhang if (C->ops->mattransposemultnumeric) { 19234222ddf1SHong Zhang /* Alg: "outerproduct" */ 19249566063dSJacob Faibussowitsch PetscCall((*C->ops->mattransposemultnumeric)(A,B,C)); 19254222ddf1SHong Zhang } else { 19264222ddf1SHong Zhang /* Alg: "matmatmult" -- C = At*B */ 19276718818eSStefano Zampini Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)product->data; 19284222ddf1SHong Zhang 192928b400f6SJacob Faibussowitsch PetscCheck(atb,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct"); 1930*7fb60732SBarry Smith if (atb->At) { /* At is computed in MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ() */ 1931*7fb60732SBarry Smith PetscCall(MatTranspose(A,MAT_REUSE_MATRIX,&atb->At)); 19324222ddf1SHong Zhang } 1933*7fb60732SBarry Smith PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ(atb->At ? atb->At : A,B,C)); 19344222ddf1SHong Zhang } 1935df97dc6dSFande Kong PetscFunctionReturn(0); 1936df97dc6dSFande Kong } 1937df97dc6dSFande Kong 19384222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_SeqAIJ_SeqAIJ(Mat C) 1939d013fc79Sandi selinger { 19404222ddf1SHong Zhang Mat_Product *product = C->product; 19414222ddf1SHong Zhang Mat A=product->A,B=product->B; 19424222ddf1SHong Zhang PetscReal fill=product->fill; 1943d013fc79Sandi selinger 1944d013fc79Sandi selinger PetscFunctionBegin; 19459566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(A,B,fill,C)); 19462869b61bSandi selinger 19474222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB_SeqAIJ_SeqAIJ; 19484222ddf1SHong Zhang PetscFunctionReturn(0); 19492869b61bSandi selinger } 1950d013fc79Sandi selinger 19514222ddf1SHong Zhang /* --------------------------------------------------------------- */ 19524222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AB(Mat C) 19534222ddf1SHong Zhang { 19544222ddf1SHong Zhang Mat_Product *product = C->product; 19554222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 19564222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 19574222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 19584222ddf1SHong Zhang const char *algTypes[7] = {"sorted","scalable","scalable_fast","heap","btheap","llcondensed","rowmerge"}; 19594222ddf1SHong Zhang PetscInt nalg = 7; 19604222ddf1SHong Zhang #else 19614222ddf1SHong Zhang const char *algTypes[8] = {"sorted","scalable","scalable_fast","heap","btheap","llcondensed","rowmerge","hypre"}; 19624222ddf1SHong Zhang PetscInt nalg = 8; 19634222ddf1SHong Zhang #endif 19644222ddf1SHong Zhang 19654222ddf1SHong Zhang PetscFunctionBegin; 19664222ddf1SHong Zhang /* Set default algorithm */ 19679566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg,"default",&flg)); 19684222ddf1SHong Zhang if (flg) { 19699566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 1970d013fc79Sandi selinger } 1971d013fc79Sandi selinger 19724222ddf1SHong Zhang /* Get runtime option */ 19734222ddf1SHong Zhang if (product->api_user) { 1974d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMult","Mat"); 19759566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[0],&alg,&flg)); 1976d0609cedSBarry Smith PetscOptionsEnd(); 19774222ddf1SHong Zhang } else { 1978d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AB","Mat"); 19799566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_AB",algTypes,nalg,algTypes[0],&alg,&flg)); 1980d0609cedSBarry Smith PetscOptionsEnd(); 1981d013fc79Sandi selinger } 19824222ddf1SHong Zhang if (flg) { 19839566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 1984d013fc79Sandi selinger } 1985d013fc79Sandi selinger 19864222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 19874222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqAIJ; 19884222ddf1SHong Zhang PetscFunctionReturn(0); 19894222ddf1SHong Zhang } 1990d013fc79Sandi selinger 19914222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AtB(Mat C) 19924222ddf1SHong Zhang { 19934222ddf1SHong Zhang Mat_Product *product = C->product; 19944222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 19954222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 1996089a957eSStefano Zampini const char *algTypes[3] = {"default","at*b","outerproduct"}; 1997089a957eSStefano Zampini PetscInt nalg = 3; 1998d013fc79Sandi selinger 19994222ddf1SHong Zhang PetscFunctionBegin; 20004222ddf1SHong Zhang /* Get runtime option */ 20014222ddf1SHong Zhang if (product->api_user) { 2002d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatTransposeMatMult","Mat"); 20039566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2004d0609cedSBarry Smith PetscOptionsEnd(); 20054222ddf1SHong Zhang } else { 2006d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AtB","Mat"); 20079566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_AtB",algTypes,nalg,algTypes[alg],&alg,&flg)); 2008d0609cedSBarry Smith PetscOptionsEnd(); 20094222ddf1SHong Zhang } 20104222ddf1SHong Zhang if (flg) { 20119566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 20124222ddf1SHong Zhang } 2013d013fc79Sandi selinger 20144222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_SeqAIJ_SeqAIJ; 20154222ddf1SHong Zhang PetscFunctionReturn(0); 20164222ddf1SHong Zhang } 20174222ddf1SHong Zhang 20184222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABt(Mat C) 20194222ddf1SHong Zhang { 20204222ddf1SHong Zhang Mat_Product *product = C->product; 20214222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 20224222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20234222ddf1SHong Zhang const char *algTypes[2] = {"default","color"}; 20244222ddf1SHong Zhang PetscInt nalg = 2; 20254222ddf1SHong Zhang 20264222ddf1SHong Zhang PetscFunctionBegin; 20274222ddf1SHong Zhang /* Set default algorithm */ 20289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg,"default",&flg)); 20294222ddf1SHong Zhang if (!flg) { 20304222ddf1SHong Zhang alg = 1; 20319566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 20324222ddf1SHong Zhang } 20334222ddf1SHong Zhang 20344222ddf1SHong Zhang /* Get runtime option */ 20354222ddf1SHong Zhang if (product->api_user) { 2036d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat"); 20379566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2038d0609cedSBarry Smith PetscOptionsEnd(); 20394222ddf1SHong Zhang } else { 2040d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat"); 20419566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg)); 2042d0609cedSBarry Smith PetscOptionsEnd(); 20434222ddf1SHong Zhang } 20444222ddf1SHong Zhang if (flg) { 20459566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 20464222ddf1SHong Zhang } 20474222ddf1SHong Zhang 20484222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ; 20494222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 20504222ddf1SHong Zhang PetscFunctionReturn(0); 20514222ddf1SHong Zhang } 20524222ddf1SHong Zhang 20534222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_PtAP(Mat C) 20544222ddf1SHong Zhang { 20554222ddf1SHong Zhang Mat_Product *product = C->product; 20564222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20574222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm -- alg=1 should be default!!! */ 20584222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 20594222ddf1SHong Zhang const char *algTypes[2] = {"scalable","rap"}; 20604222ddf1SHong Zhang PetscInt nalg = 2; 20614222ddf1SHong Zhang #else 20624222ddf1SHong Zhang const char *algTypes[3] = {"scalable","rap","hypre"}; 20634222ddf1SHong Zhang PetscInt nalg = 3; 20644222ddf1SHong Zhang #endif 20654222ddf1SHong Zhang 20664222ddf1SHong Zhang PetscFunctionBegin; 20674222ddf1SHong Zhang /* Set default algorithm */ 20689566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 20694222ddf1SHong Zhang if (flg) { 20709566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 20714222ddf1SHong Zhang } 20724222ddf1SHong Zhang 20734222ddf1SHong Zhang /* Get runtime option */ 20744222ddf1SHong Zhang if (product->api_user) { 2075d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatPtAP","Mat"); 20769566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[0],&alg,&flg)); 2077d0609cedSBarry Smith PetscOptionsEnd(); 20784222ddf1SHong Zhang } else { 2079d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_PtAP","Mat"); 20809566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_PtAP",algTypes,nalg,algTypes[0],&alg,&flg)); 2081d0609cedSBarry Smith PetscOptionsEnd(); 20824222ddf1SHong Zhang } 20834222ddf1SHong Zhang if (flg) { 20849566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 20854222ddf1SHong Zhang } 20864222ddf1SHong Zhang 20874222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_SeqAIJ_SeqAIJ; 20884222ddf1SHong Zhang PetscFunctionReturn(0); 20894222ddf1SHong Zhang } 20904222ddf1SHong Zhang 20914222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_RARt(Mat C) 20924222ddf1SHong Zhang { 20934222ddf1SHong Zhang Mat_Product *product = C->product; 20944222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20954222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 20964222ddf1SHong Zhang const char *algTypes[3] = {"r*a*rt","r*art","coloring_rart"}; 20974222ddf1SHong Zhang PetscInt nalg = 3; 20984222ddf1SHong Zhang 20994222ddf1SHong Zhang PetscFunctionBegin; 21004222ddf1SHong Zhang /* Set default algorithm */ 21019566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 21024222ddf1SHong Zhang if (flg) { 21039566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 21044222ddf1SHong Zhang } 21054222ddf1SHong Zhang 21064222ddf1SHong Zhang /* Get runtime option */ 21074222ddf1SHong Zhang if (product->api_user) { 2108d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatRARt","Mat"); 21099566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matrart_via","Algorithmic approach","MatRARt",algTypes,nalg,algTypes[0],&alg,&flg)); 2110d0609cedSBarry Smith PetscOptionsEnd(); 21114222ddf1SHong Zhang } else { 2112d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_RARt","Mat"); 21139566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_RARt",algTypes,nalg,algTypes[0],&alg,&flg)); 2114d0609cedSBarry Smith PetscOptionsEnd(); 21154222ddf1SHong Zhang } 21164222ddf1SHong Zhang if (flg) { 21179566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 21184222ddf1SHong Zhang } 21194222ddf1SHong Zhang 21204222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_SeqAIJ_SeqAIJ; 21214222ddf1SHong Zhang PetscFunctionReturn(0); 21224222ddf1SHong Zhang } 21234222ddf1SHong Zhang 21244222ddf1SHong Zhang /* ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm */ 21254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABC(Mat C) 21264222ddf1SHong Zhang { 21274222ddf1SHong Zhang Mat_Product *product = C->product; 21284222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 21294222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 21304222ddf1SHong Zhang const char *algTypes[7] = {"sorted","scalable","scalable_fast","heap","btheap","llcondensed","rowmerge"}; 21314222ddf1SHong Zhang PetscInt nalg = 7; 21324222ddf1SHong Zhang 21334222ddf1SHong Zhang PetscFunctionBegin; 21344222ddf1SHong Zhang /* Set default algorithm */ 21359566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg,"default",&flg)); 21364222ddf1SHong Zhang if (flg) { 21379566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 21384222ddf1SHong Zhang } 21394222ddf1SHong Zhang 21404222ddf1SHong Zhang /* Get runtime option */ 21414222ddf1SHong Zhang if (product->api_user) { 2142d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMatMult","Mat"); 21439566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via","Algorithmic approach","MatMatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg)); 2144d0609cedSBarry Smith PetscOptionsEnd(); 21454222ddf1SHong Zhang } else { 2146d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABC","Mat"); 21479566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABC",algTypes,nalg,algTypes[alg],&alg,&flg)); 2148d0609cedSBarry Smith PetscOptionsEnd(); 21494222ddf1SHong Zhang } 21504222ddf1SHong Zhang if (flg) { 21519566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg])); 21524222ddf1SHong Zhang } 21534222ddf1SHong Zhang 21544222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_SeqAIJ_SeqAIJ_SeqAIJ; 21554222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 21564222ddf1SHong Zhang PetscFunctionReturn(0); 21574222ddf1SHong Zhang } 21584222ddf1SHong Zhang 21594222ddf1SHong Zhang PetscErrorCode MatProductSetFromOptions_SeqAIJ(Mat C) 21604222ddf1SHong Zhang { 21614222ddf1SHong Zhang Mat_Product *product = C->product; 21624222ddf1SHong Zhang 21634222ddf1SHong Zhang PetscFunctionBegin; 21644222ddf1SHong Zhang switch (product->type) { 21654222ddf1SHong Zhang case MATPRODUCT_AB: 21669566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_AB(C)); 21674222ddf1SHong Zhang break; 21684222ddf1SHong Zhang case MATPRODUCT_AtB: 21699566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_AtB(C)); 21704222ddf1SHong Zhang break; 21714222ddf1SHong Zhang case MATPRODUCT_ABt: 21729566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_ABt(C)); 21734222ddf1SHong Zhang break; 21744222ddf1SHong Zhang case MATPRODUCT_PtAP: 21759566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_PtAP(C)); 21764222ddf1SHong Zhang break; 21774222ddf1SHong Zhang case MATPRODUCT_RARt: 21789566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_RARt(C)); 21794222ddf1SHong Zhang break; 21804222ddf1SHong Zhang case MATPRODUCT_ABC: 21819566063dSJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_ABC(C)); 21824222ddf1SHong Zhang break; 21836718818eSStefano Zampini default: 21846718818eSStefano Zampini break; 21854222ddf1SHong Zhang } 2186d013fc79Sandi selinger PetscFunctionReturn(0); 2187d013fc79Sandi selinger } 2188