xref: /petsc/src/mat/impls/aij/seq/matmatmult.c (revision 7fb60732ccf1806988e9909cd147cdb09c395756)
1be1d678aSKris Buschelman 
2d50806bdSBarry Smith /*
32499ec78SHong Zhang   Defines matrix-matrix product routines for pairs of SeqAIJ matrices
4d50806bdSBarry Smith           C = A * B
5d50806bdSBarry Smith */
6d50806bdSBarry Smith 
7c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/
8c6db04a5SJed Brown #include <../src/mat/utils/freespace.h>
9c6db04a5SJed Brown #include <petscbt.h>
10af0996ceSBarry Smith #include <petsc/private/isimpl.h>
1107475bc1SBarry Smith #include <../src/mat/impls/dense/seq/dense.h>
127bab7c10SHong Zhang 
13df97dc6dSFande Kong PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C)
14df97dc6dSFande Kong {
15df97dc6dSFande Kong   PetscFunctionBegin;
16df97dc6dSFande Kong   if (C->ops->matmultnumeric) {
1708401ef6SPierre Jolivet     PetscCheck(C->ops->matmultnumeric != MatMatMultNumeric_SeqAIJ_SeqAIJ,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Recursive call");
189566063dSJacob Faibussowitsch     PetscCall((*C->ops->matmultnumeric)(A,B,C));
19df97dc6dSFande Kong   } else {
209566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(A,B,C));
21df97dc6dSFande Kong   }
22df97dc6dSFande Kong   PetscFunctionReturn(0);
23df97dc6dSFande Kong }
24df97dc6dSFande Kong 
254222ddf1SHong Zhang /* Modified from MatCreateSeqAIJWithArrays() */
26e4e71118SStefano Zampini PETSC_INTERN PetscErrorCode MatSetSeqAIJWithArrays_private(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt i[],PetscInt j[],PetscScalar a[],MatType mtype,Mat mat)
27df97dc6dSFande Kong {
284222ddf1SHong Zhang   PetscInt       ii;
294222ddf1SHong Zhang   Mat_SeqAIJ     *aij;
30cbc6b225SStefano Zampini   PetscBool      isseqaij, osingle, ofree_a, ofree_ij;
315c66b693SKris Buschelman 
325c66b693SKris Buschelman   PetscFunctionBegin;
33aed4548fSBarry Smith   PetscCheck(m <= 0 || !i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
349566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat,m,n,m,n));
354222ddf1SHong Zhang 
36e4e71118SStefano Zampini   if (!mtype) {
379566063dSJacob Faibussowitsch     PetscCall(PetscObjectBaseTypeCompare((PetscObject)mat,MATSEQAIJ,&isseqaij));
389566063dSJacob Faibussowitsch     if (!isseqaij) PetscCall(MatSetType(mat,MATSEQAIJ));
39e4e71118SStefano Zampini   } else {
409566063dSJacob Faibussowitsch     PetscCall(MatSetType(mat,mtype));
41e4e71118SStefano Zampini   }
42cbc6b225SStefano Zampini 
434222ddf1SHong Zhang   aij  = (Mat_SeqAIJ*)(mat)->data;
44cbc6b225SStefano Zampini   osingle = aij->singlemalloc;
45cbc6b225SStefano Zampini   ofree_a = aij->free_a;
46cbc6b225SStefano Zampini   ofree_ij = aij->free_ij;
47cbc6b225SStefano Zampini   /* changes the free flags */
489566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(mat,MAT_SKIP_ALLOCATION,NULL));
49cbc6b225SStefano Zampini 
509566063dSJacob Faibussowitsch   PetscCall(PetscFree(aij->ilen));
519566063dSJacob Faibussowitsch   PetscCall(PetscFree(aij->imax));
529566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m,&aij->imax));
539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m,&aij->ilen));
54cbc6b225SStefano Zampini   for (ii=0,aij->nonzerorowcnt=0,aij->rmax = 0; ii<m; ii++) {
55cbc6b225SStefano Zampini     const PetscInt rnz = i[ii+1] - i[ii];
56cbc6b225SStefano Zampini     aij->nonzerorowcnt += !!rnz;
57cbc6b225SStefano Zampini     aij->rmax = PetscMax(aij->rmax,rnz);
58cbc6b225SStefano Zampini     aij->ilen[ii] = aij->imax[ii] = i[ii+1] - i[ii];
59cbc6b225SStefano Zampini   }
60cbc6b225SStefano Zampini   aij->maxnz = i[m];
61cbc6b225SStefano Zampini   aij->nz = i[m];
624222ddf1SHong Zhang 
63cbc6b225SStefano Zampini   if (osingle) {
649566063dSJacob Faibussowitsch     PetscCall(PetscFree3(aij->a,aij->j,aij->i));
65cbc6b225SStefano Zampini   } else {
669566063dSJacob Faibussowitsch     if (ofree_a)  PetscCall(PetscFree(aij->a));
679566063dSJacob Faibussowitsch     if (ofree_ij) PetscCall(PetscFree(aij->j));
689566063dSJacob Faibussowitsch     if (ofree_ij) PetscCall(PetscFree(aij->i));
69cbc6b225SStefano Zampini   }
704222ddf1SHong Zhang   aij->i            = i;
714222ddf1SHong Zhang   aij->j            = j;
724222ddf1SHong Zhang   aij->a            = a;
734222ddf1SHong Zhang   aij->nonew        = -1; /* this indicates that inserting a new value in the matrix that generates a new nonzero is an error */
74cbc6b225SStefano Zampini   /* default to not retain ownership */
75cbc6b225SStefano Zampini   aij->singlemalloc = PETSC_FALSE;
764222ddf1SHong Zhang   aij->free_a       = PETSC_FALSE;
774222ddf1SHong Zhang   aij->free_ij      = PETSC_FALSE;
789566063dSJacob Faibussowitsch   PetscCall(MatCheckCompressedRow(mat,aij->nonzerorowcnt,&aij->compressedrow,aij->i,m,0.6));
795c66b693SKris Buschelman   PetscFunctionReturn(0);
805c66b693SKris Buschelman }
811c24bd37SHong Zhang 
824222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat C)
834222ddf1SHong Zhang {
844222ddf1SHong Zhang   Mat_Product         *product = C->product;
854222ddf1SHong Zhang   MatProductAlgorithm alg;
864222ddf1SHong Zhang   PetscBool           flg;
874222ddf1SHong Zhang 
884222ddf1SHong Zhang   PetscFunctionBegin;
894222ddf1SHong Zhang   if (product) {
904222ddf1SHong Zhang     alg = product->alg;
914222ddf1SHong Zhang   } else {
924222ddf1SHong Zhang     alg = "sorted";
934222ddf1SHong Zhang   }
944222ddf1SHong Zhang   /* sorted */
959566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"sorted",&flg));
964222ddf1SHong Zhang   if (flg) {
979566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(A,B,fill,C));
984222ddf1SHong Zhang     PetscFunctionReturn(0);
994222ddf1SHong Zhang   }
1004222ddf1SHong Zhang 
1014222ddf1SHong Zhang   /* scalable */
1029566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"scalable",&flg));
1034222ddf1SHong Zhang   if (flg) {
1049566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(A,B,fill,C));
1054222ddf1SHong Zhang     PetscFunctionReturn(0);
1064222ddf1SHong Zhang   }
1074222ddf1SHong Zhang 
1084222ddf1SHong Zhang   /* scalable_fast */
1099566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"scalable_fast",&flg));
1104222ddf1SHong Zhang   if (flg) {
1119566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(A,B,fill,C));
1124222ddf1SHong Zhang     PetscFunctionReturn(0);
1134222ddf1SHong Zhang   }
1144222ddf1SHong Zhang 
1154222ddf1SHong Zhang   /* heap */
1169566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"heap",&flg));
1174222ddf1SHong Zhang   if (flg) {
1189566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(A,B,fill,C));
1194222ddf1SHong Zhang     PetscFunctionReturn(0);
1204222ddf1SHong Zhang   }
1214222ddf1SHong Zhang 
1224222ddf1SHong Zhang   /* btheap */
1239566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"btheap",&flg));
1244222ddf1SHong Zhang   if (flg) {
1259566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(A,B,fill,C));
1264222ddf1SHong Zhang     PetscFunctionReturn(0);
1274222ddf1SHong Zhang   }
1284222ddf1SHong Zhang 
1294222ddf1SHong Zhang   /* llcondensed */
1309566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"llcondensed",&flg));
1314222ddf1SHong Zhang   if (flg) {
1329566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(A,B,fill,C));
1334222ddf1SHong Zhang     PetscFunctionReturn(0);
1344222ddf1SHong Zhang   }
1354222ddf1SHong Zhang 
1364222ddf1SHong Zhang   /* rowmerge */
1379566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"rowmerge",&flg));
1384222ddf1SHong Zhang   if (flg) {
1399566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(A,B,fill,C));
1404222ddf1SHong Zhang     PetscFunctionReturn(0);
1414222ddf1SHong Zhang   }
1424222ddf1SHong Zhang 
1434222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE)
1449566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(alg,"hypre",&flg));
1454222ddf1SHong Zhang   if (flg) {
1469566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A,B,fill,C));
1474222ddf1SHong Zhang     PetscFunctionReturn(0);
1484222ddf1SHong Zhang   }
1494222ddf1SHong Zhang #endif
1504222ddf1SHong Zhang 
1514222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Mat Product Algorithm is not supported");
1524222ddf1SHong Zhang }
1534222ddf1SHong Zhang 
1544222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(Mat A,Mat B,PetscReal fill,Mat C)
155b561aa9dSHong Zhang {
156b561aa9dSHong Zhang   Mat_SeqAIJ         *a =(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
157971236abSHong Zhang   PetscInt           *ai=a->i,*bi=b->i,*ci,*cj;
158c1ba5575SJed Brown   PetscInt           am =A->rmap->N,bn=B->cmap->N,bm=B->rmap->N;
159b561aa9dSHong Zhang   PetscReal          afill;
160eca6b86aSHong Zhang   PetscInt           i,j,anzi,brow,bnzj,cnzi,*bj,*aj,*lnk,ndouble=0,Crmax;
161eca6b86aSHong Zhang   PetscTable         ta;
162fb908031SHong Zhang   PetscBT            lnkbt;
1630298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
164b561aa9dSHong Zhang 
165b561aa9dSHong Zhang   PetscFunctionBegin;
166bd958071SHong Zhang   /* Get ci and cj */
167bd958071SHong Zhang   /*---------------*/
168fb908031SHong Zhang   /* Allocate ci array, arrays for fill computation and */
169fb908031SHong Zhang   /* free space for accumulating nonzero column info */
1709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&ci));
171fb908031SHong Zhang   ci[0] = 0;
172fb908031SHong Zhang 
173fb908031SHong Zhang   /* create and initialize a linked list */
1749566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(bn,bn,&ta));
175c373ccc6SHong Zhang   MatRowMergeMax_SeqAIJ(b,bm,ta);
1769566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Crmax));
1779566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
178eca6b86aSHong Zhang 
1799566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate(Crmax,bn,&lnk,&lnkbt));
180fb908031SHong Zhang 
181fb908031SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
1829566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space));
1832205254eSKarl Rupp 
184fb908031SHong Zhang   current_space = free_space;
185fb908031SHong Zhang 
186fb908031SHong Zhang   /* Determine ci and cj */
187fb908031SHong Zhang   for (i=0; i<am; i++) {
188fb908031SHong Zhang     anzi = ai[i+1] - ai[i];
189fb908031SHong Zhang     aj   = a->j + ai[i];
190fb908031SHong Zhang     for (j=0; j<anzi; j++) {
191fb908031SHong Zhang       brow = aj[j];
192fb908031SHong Zhang       bnzj = bi[brow+1] - bi[brow];
193fb908031SHong Zhang       bj   = b->j + bi[brow];
194fb908031SHong Zhang       /* add non-zero cols of B into the sorted linked list lnk */
1959566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(bnzj,bj,lnk,lnkbt));
196fb908031SHong Zhang     }
1978c78258cSHong Zhang     /* add possible missing diagonal entry */
1988c78258cSHong Zhang     if (C->force_diagonals) {
1999566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted(1,&i,lnk,lnkbt));
2008c78258cSHong Zhang     }
201fb908031SHong Zhang     cnzi = lnk[0];
202fb908031SHong Zhang 
203fb908031SHong Zhang     /* If free space is not available, make more free space */
204fb908031SHong Zhang     /* Double the amount of total space in the list */
205fb908031SHong Zhang     if (current_space->local_remaining<cnzi) {
2069566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi,current_space->total_array_size),&current_space));
207fb908031SHong Zhang       ndouble++;
208fb908031SHong Zhang     }
209fb908031SHong Zhang 
210fb908031SHong Zhang     /* Copy data into free space, then initialize lnk */
2119566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean(bn,cnzi,current_space->array,lnk,lnkbt));
2122205254eSKarl Rupp 
213fb908031SHong Zhang     current_space->array           += cnzi;
214fb908031SHong Zhang     current_space->local_used      += cnzi;
215fb908031SHong Zhang     current_space->local_remaining -= cnzi;
2162205254eSKarl Rupp 
217fb908031SHong Zhang     ci[i+1] = ci[i] + cnzi;
218fb908031SHong Zhang   }
219fb908031SHong Zhang 
220fb908031SHong Zhang   /* Column indices are in the list of free space */
221fb908031SHong Zhang   /* Allocate space for cj, initialize cj, and */
222fb908031SHong Zhang   /* destroy list of free space and other temporary array(s) */
2239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am]+1,&cj));
2249566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,cj));
2259566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy(lnk,lnkbt));
226b561aa9dSHong Zhang 
22726be0446SHong Zhang   /* put together the new symbolic matrix */
2289566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C));
2299566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
23058c24d83SHong Zhang 
23158c24d83SHong Zhang   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
23258c24d83SHong Zhang   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
2334222ddf1SHong Zhang   c          = (Mat_SeqAIJ*)(C->data);
234aa1aec99SHong Zhang   c->free_a  = PETSC_FALSE;
235e6b907acSBarry Smith   c->free_ij = PETSC_TRUE;
23658c24d83SHong Zhang   c->nonew   = 0;
2374222ddf1SHong Zhang 
2384222ddf1SHong Zhang   /* fast, needs non-scalable O(bn) array 'abdense' */
2394222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
2400b7e3e3dSHong Zhang 
2417212da7cSHong Zhang   /* set MatInfo */
2427212da7cSHong Zhang   afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5;
243f2b054eeSHong Zhang   if (afill < 1.0) afill = 1.0;
2444222ddf1SHong Zhang   C->info.mallocs           = ndouble;
2454222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
2464222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
2477212da7cSHong Zhang 
2487212da7cSHong Zhang #if defined(PETSC_USE_INFO)
2497212da7cSHong Zhang   if (ci[am]) {
2509566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill));
2519566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
252f2b054eeSHong Zhang   } else {
2539566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
254be0fcf8dSHong Zhang   }
255f2b054eeSHong Zhang #endif
25658c24d83SHong Zhang   PetscFunctionReturn(0);
25758c24d83SHong Zhang }
258d50806bdSBarry Smith 
259df97dc6dSFande Kong PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(Mat A,Mat B,Mat C)
260d50806bdSBarry Smith {
261d13dce4bSSatish Balay   PetscLogDouble    flops=0.0;
262d50806bdSBarry Smith   Mat_SeqAIJ        *a   = (Mat_SeqAIJ*)A->data;
263d50806bdSBarry Smith   Mat_SeqAIJ        *b   = (Mat_SeqAIJ*)B->data;
264d50806bdSBarry Smith   Mat_SeqAIJ        *c   = (Mat_SeqAIJ*)C->data;
26538baddfdSBarry Smith   PetscInt          *ai  =a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj,*ci=c->i,*cj=c->j;
266c58ca2e3SHong Zhang   PetscInt          am   =A->rmap->n,cm=C->rmap->n;
267519eb980SHong Zhang   PetscInt          i,j,k,anzi,bnzi,cnzi,brow;
2682e5835c6SStefano Zampini   PetscScalar       *ca,valtmp;
269aa1aec99SHong Zhang   PetscScalar       *ab_dense;
2706718818eSStefano Zampini   PetscContainer    cab_dense;
2712e5835c6SStefano Zampini   const PetscScalar *aa,*ba,*baj;
272d50806bdSBarry Smith 
273d50806bdSBarry Smith   PetscFunctionBegin;
2749566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A,&aa));
2759566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B,&ba));
276aa1aec99SHong Zhang   if (!c->a) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */
2779566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ci[cm]+1,&ca));
278aa1aec99SHong Zhang     c->a      = ca;
279aa1aec99SHong Zhang     c->free_a = PETSC_TRUE;
2806718818eSStefano Zampini   } else ca = c->a;
2816718818eSStefano Zampini 
2826718818eSStefano Zampini   /* TODO this should be done in the symbolic phase */
2836718818eSStefano Zampini   /* However, this function is so heavily used (sometimes in an hidden way through multnumeric function pointers
2846718818eSStefano Zampini      that is hard to eradicate) */
2859566063dSJacob Faibussowitsch   PetscCall(PetscObjectQuery((PetscObject)C,"__PETSc__ab_dense",(PetscObject*)&cab_dense));
2866718818eSStefano Zampini   if (!cab_dense) {
2879566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(B->cmap->N,&ab_dense));
2889566063dSJacob Faibussowitsch     PetscCall(PetscContainerCreate(PETSC_COMM_SELF,&cab_dense));
2899566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetPointer(cab_dense,ab_dense));
2909566063dSJacob Faibussowitsch     PetscCall(PetscContainerSetUserDestroy(cab_dense,PetscContainerUserDestroyDefault));
2919566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)C,"__PETSc__ab_dense",(PetscObject)cab_dense));
2929566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)cab_dense));
293d90d86d0SMatthew G. Knepley   }
2949566063dSJacob Faibussowitsch   PetscCall(PetscContainerGetPointer(cab_dense,(void**)&ab_dense));
2959566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(ab_dense,B->cmap->N));
296aa1aec99SHong Zhang 
297c124e916SHong Zhang   /* clean old values in C */
2989566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(ca,ci[cm]));
299d50806bdSBarry Smith   /* Traverse A row-wise. */
300d50806bdSBarry Smith   /* Build the ith row in C by summing over nonzero columns in A, */
301d50806bdSBarry Smith   /* the rows of B corresponding to nonzeros of A. */
302d50806bdSBarry Smith   for (i=0; i<am; i++) {
303d50806bdSBarry Smith     anzi = ai[i+1] - ai[i];
304d50806bdSBarry Smith     for (j=0; j<anzi; j++) {
305519eb980SHong Zhang       brow = aj[j];
306d50806bdSBarry Smith       bnzi = bi[brow+1] - bi[brow];
307d50806bdSBarry Smith       bjj  = bj + bi[brow];
308d50806bdSBarry Smith       baj  = ba + bi[brow];
309519eb980SHong Zhang       /* perform dense axpy */
31036ec6d2dSHong Zhang       valtmp = aa[j];
311519eb980SHong Zhang       for (k=0; k<bnzi; k++) {
31236ec6d2dSHong Zhang         ab_dense[bjj[k]] += valtmp*baj[k];
313519eb980SHong Zhang       }
314519eb980SHong Zhang       flops += 2*bnzi;
315519eb980SHong Zhang     }
316c58ca2e3SHong Zhang     aj += anzi; aa += anzi;
317c58ca2e3SHong Zhang 
318c58ca2e3SHong Zhang     cnzi = ci[i+1] - ci[i];
319519eb980SHong Zhang     for (k=0; k<cnzi; k++) {
320519eb980SHong Zhang       ca[k]          += ab_dense[cj[k]];
321519eb980SHong Zhang       ab_dense[cj[k]] = 0.0; /* zero ab_dense */
322519eb980SHong Zhang     }
323519eb980SHong Zhang     flops += cnzi;
324519eb980SHong Zhang     cj    += cnzi; ca += cnzi;
325519eb980SHong Zhang   }
3262e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
3272e5835c6SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
3282e5835c6SStefano Zampini #endif
3299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
3309566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
3319566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
3329566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A,&aa));
3339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B,&ba));
334c58ca2e3SHong Zhang   PetscFunctionReturn(0);
335c58ca2e3SHong Zhang }
336c58ca2e3SHong Zhang 
33725023028SHong Zhang PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(Mat A,Mat B,Mat C)
338c58ca2e3SHong Zhang {
339c58ca2e3SHong Zhang   PetscLogDouble    flops=0.0;
340c58ca2e3SHong Zhang   Mat_SeqAIJ        *a   = (Mat_SeqAIJ*)A->data;
341c58ca2e3SHong Zhang   Mat_SeqAIJ        *b   = (Mat_SeqAIJ*)B->data;
342c58ca2e3SHong Zhang   Mat_SeqAIJ        *c   = (Mat_SeqAIJ*)C->data;
343c58ca2e3SHong Zhang   PetscInt          *ai  = a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj,*ci=c->i,*cj=c->j;
344c58ca2e3SHong Zhang   PetscInt          am   = A->rmap->N,cm=C->rmap->N;
345c58ca2e3SHong Zhang   PetscInt          i,j,k,anzi,bnzi,cnzi,brow;
3462e5835c6SStefano Zampini   PetscScalar       *ca=c->a,valtmp;
3472e5835c6SStefano Zampini   const PetscScalar *aa,*ba,*baj;
348c58ca2e3SHong Zhang   PetscInt          nextb;
349c58ca2e3SHong Zhang 
350c58ca2e3SHong Zhang   PetscFunctionBegin;
3519566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A,&aa));
3529566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(B,&ba));
353cf742fccSHong Zhang   if (!ca) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */
3549566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(ci[cm]+1,&ca));
355cf742fccSHong Zhang     c->a      = ca;
356cf742fccSHong Zhang     c->free_a = PETSC_TRUE;
357cf742fccSHong Zhang   }
358cf742fccSHong Zhang 
359c58ca2e3SHong Zhang   /* clean old values in C */
3609566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(ca,ci[cm]));
361c58ca2e3SHong Zhang   /* Traverse A row-wise. */
362c58ca2e3SHong Zhang   /* Build the ith row in C by summing over nonzero columns in A, */
363c58ca2e3SHong Zhang   /* the rows of B corresponding to nonzeros of A. */
364519eb980SHong Zhang   for (i=0; i<am; i++) {
365519eb980SHong Zhang     anzi = ai[i+1] - ai[i];
366519eb980SHong Zhang     cnzi = ci[i+1] - ci[i];
367519eb980SHong Zhang     for (j=0; j<anzi; j++) {
368519eb980SHong Zhang       brow = aj[j];
369519eb980SHong Zhang       bnzi = bi[brow+1] - bi[brow];
370519eb980SHong Zhang       bjj  = bj + bi[brow];
371519eb980SHong Zhang       baj  = ba + bi[brow];
372519eb980SHong Zhang       /* perform sparse axpy */
37336ec6d2dSHong Zhang       valtmp = aa[j];
374c124e916SHong Zhang       nextb  = 0;
375c124e916SHong Zhang       for (k=0; nextb<bnzi; k++) {
376c124e916SHong Zhang         if (cj[k] == bjj[nextb]) { /* ccol == bcol */
37736ec6d2dSHong Zhang           ca[k] += valtmp*baj[nextb++];
378c124e916SHong Zhang         }
379d50806bdSBarry Smith       }
380d50806bdSBarry Smith       flops += 2*bnzi;
381d50806bdSBarry Smith     }
382519eb980SHong Zhang     aj += anzi; aa += anzi;
383519eb980SHong Zhang     cj += cnzi; ca += cnzi;
384d50806bdSBarry Smith   }
3852e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE)
3862e5835c6SStefano Zampini   if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU;
3872e5835c6SStefano Zampini #endif
3889566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
3899566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
3909566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
3919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A,&aa));
3929566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(B,&ba));
393d50806bdSBarry Smith   PetscFunctionReturn(0);
394d50806bdSBarry Smith }
395bc011b1eSHong Zhang 
3964222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(Mat A,Mat B,PetscReal fill,Mat C)
39725296bd5SBarry Smith {
39825296bd5SBarry Smith   Mat_SeqAIJ         *a  = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
39925296bd5SBarry Smith   PetscInt           *ai = a->i,*bi=b->i,*ci,*cj;
4003c50cad2SHong Zhang   PetscInt           am  = A->rmap->N,bn=B->cmap->N,bm=B->rmap->N;
40125296bd5SBarry Smith   MatScalar          *ca;
40225296bd5SBarry Smith   PetscReal          afill;
403eca6b86aSHong Zhang   PetscInt           i,j,anzi,brow,bnzj,cnzi,*bj,*aj,*lnk,ndouble=0,Crmax;
404eca6b86aSHong Zhang   PetscTable         ta;
4050298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
40625296bd5SBarry Smith 
40725296bd5SBarry Smith   PetscFunctionBegin;
4083c50cad2SHong Zhang   /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_fast() */
4093c50cad2SHong Zhang   /*-----------------------------------------------------------------------------------------*/
4103c50cad2SHong Zhang   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
4119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&ci));
4123c50cad2SHong Zhang   ci[0] = 0;
4133c50cad2SHong Zhang 
4143c50cad2SHong Zhang   /* create and initialize a linked list */
4159566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(bn,bn,&ta));
416c373ccc6SHong Zhang   MatRowMergeMax_SeqAIJ(b,bm,ta);
4179566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Crmax));
4189566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
419eca6b86aSHong Zhang 
4209566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_fast(Crmax,&lnk));
4213c50cad2SHong Zhang 
4223c50cad2SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
4239566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space));
4243c50cad2SHong Zhang   current_space = free_space;
4253c50cad2SHong Zhang 
4263c50cad2SHong Zhang   /* Determine ci and cj */
4273c50cad2SHong Zhang   for (i=0; i<am; i++) {
4283c50cad2SHong Zhang     anzi = ai[i+1] - ai[i];
4293c50cad2SHong Zhang     aj   = a->j + ai[i];
4303c50cad2SHong Zhang     for (j=0; j<anzi; j++) {
4313c50cad2SHong Zhang       brow = aj[j];
4323c50cad2SHong Zhang       bnzj = bi[brow+1] - bi[brow];
4333c50cad2SHong Zhang       bj   = b->j + bi[brow];
4343c50cad2SHong Zhang       /* add non-zero cols of B into the sorted linked list lnk */
4359566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_fast(bnzj,bj,lnk));
4363c50cad2SHong Zhang     }
4378c78258cSHong Zhang     /* add possible missing diagonal entry */
4388c78258cSHong Zhang     if (C->force_diagonals) {
4399566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_fast(1,&i,lnk));
4408c78258cSHong Zhang     }
4413c50cad2SHong Zhang     cnzi = lnk[1];
4423c50cad2SHong Zhang 
4433c50cad2SHong Zhang     /* If free space is not available, make more free space */
4443c50cad2SHong Zhang     /* Double the amount of total space in the list */
4453c50cad2SHong Zhang     if (current_space->local_remaining<cnzi) {
4469566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi,current_space->total_array_size),&current_space));
4473c50cad2SHong Zhang       ndouble++;
4483c50cad2SHong Zhang     }
4493c50cad2SHong Zhang 
4503c50cad2SHong Zhang     /* Copy data into free space, then initialize lnk */
4519566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_fast(cnzi,current_space->array,lnk));
4522205254eSKarl Rupp 
4533c50cad2SHong Zhang     current_space->array           += cnzi;
4543c50cad2SHong Zhang     current_space->local_used      += cnzi;
4553c50cad2SHong Zhang     current_space->local_remaining -= cnzi;
4562205254eSKarl Rupp 
4573c50cad2SHong Zhang     ci[i+1] = ci[i] + cnzi;
4583c50cad2SHong Zhang   }
4593c50cad2SHong Zhang 
4603c50cad2SHong Zhang   /* Column indices are in the list of free space */
4613c50cad2SHong Zhang   /* Allocate space for cj, initialize cj, and */
4623c50cad2SHong Zhang   /* destroy list of free space and other temporary array(s) */
4639566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am]+1,&cj));
4649566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,cj));
4659566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_fast(lnk));
46625296bd5SBarry Smith 
46725296bd5SBarry Smith   /* Allocate space for ca */
4689566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ci[am]+1,&ca));
46925296bd5SBarry Smith 
47025296bd5SBarry Smith   /* put together the new symbolic matrix */
4719566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,ca,((PetscObject)A)->type_name,C));
4729566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
47325296bd5SBarry Smith 
47425296bd5SBarry Smith   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
47525296bd5SBarry Smith   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
4764222ddf1SHong Zhang   c          = (Mat_SeqAIJ*)(C->data);
47725296bd5SBarry Smith   c->free_a  = PETSC_TRUE;
47825296bd5SBarry Smith   c->free_ij = PETSC_TRUE;
47925296bd5SBarry Smith   c->nonew   = 0;
4802205254eSKarl Rupp 
4814222ddf1SHong Zhang   /* slower, less memory */
4824222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable;
48325296bd5SBarry Smith 
48425296bd5SBarry Smith   /* set MatInfo */
48525296bd5SBarry Smith   afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5;
48625296bd5SBarry Smith   if (afill < 1.0) afill = 1.0;
4874222ddf1SHong Zhang   C->info.mallocs           = ndouble;
4884222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
4894222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
49025296bd5SBarry Smith 
49125296bd5SBarry Smith #if defined(PETSC_USE_INFO)
49225296bd5SBarry Smith   if (ci[am]) {
4939566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill));
4949566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
49525296bd5SBarry Smith   } else {
4969566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
49725296bd5SBarry Smith   }
49825296bd5SBarry Smith #endif
49925296bd5SBarry Smith   PetscFunctionReturn(0);
50025296bd5SBarry Smith }
50125296bd5SBarry Smith 
5024222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(Mat A,Mat B,PetscReal fill,Mat C)
503e9e4536cSHong Zhang {
504e9e4536cSHong Zhang   Mat_SeqAIJ         *a  = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
505bf9555e6SHong Zhang   PetscInt           *ai = a->i,*bi=b->i,*ci,*cj;
50625c41797SHong Zhang   PetscInt           am  = A->rmap->N,bn=B->cmap->N,bm=B->rmap->N;
507e9e4536cSHong Zhang   MatScalar          *ca;
508e9e4536cSHong Zhang   PetscReal          afill;
509eca6b86aSHong Zhang   PetscInt           i,j,anzi,brow,bnzj,cnzi,*bj,*aj,*lnk,ndouble=0,Crmax;
510eca6b86aSHong Zhang   PetscTable         ta;
5110298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
512e9e4536cSHong Zhang 
513e9e4536cSHong Zhang   PetscFunctionBegin;
514bd958071SHong Zhang   /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_Scalalbe() */
515bd958071SHong Zhang   /*---------------------------------------------------------------------------------------------*/
516bd958071SHong Zhang   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
5179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&ci));
518bd958071SHong Zhang   ci[0] = 0;
519bd958071SHong Zhang 
520bd958071SHong Zhang   /* create and initialize a linked list */
5219566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(bn,bn,&ta));
522c373ccc6SHong Zhang   MatRowMergeMax_SeqAIJ(b,bm,ta);
5239566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(ta,&Crmax));
5249566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&ta));
5259566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedCreate_Scalable(Crmax,&lnk));
526bd958071SHong Zhang 
527bd958071SHong Zhang   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
5289566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space));
529bd958071SHong Zhang   current_space = free_space;
530bd958071SHong Zhang 
531bd958071SHong Zhang   /* Determine ci and cj */
532bd958071SHong Zhang   for (i=0; i<am; i++) {
533bd958071SHong Zhang     anzi = ai[i+1] - ai[i];
534bd958071SHong Zhang     aj   = a->j + ai[i];
535bd958071SHong Zhang     for (j=0; j<anzi; j++) {
536bd958071SHong Zhang       brow = aj[j];
537bd958071SHong Zhang       bnzj = bi[brow+1] - bi[brow];
538bd958071SHong Zhang       bj   = b->j + bi[brow];
539bd958071SHong Zhang       /* add non-zero cols of B into the sorted linked list lnk */
5409566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(bnzj,bj,lnk));
541bd958071SHong Zhang     }
5428c78258cSHong Zhang     /* add possible missing diagonal entry */
5438c78258cSHong Zhang     if (C->force_diagonals) {
5449566063dSJacob Faibussowitsch       PetscCall(PetscLLCondensedAddSorted_Scalable(1,&i,lnk));
5458c78258cSHong Zhang     }
5468c78258cSHong Zhang 
547bd958071SHong Zhang     cnzi = lnk[0];
548bd958071SHong Zhang 
549bd958071SHong Zhang     /* If free space is not available, make more free space */
550bd958071SHong Zhang     /* Double the amount of total space in the list */
551bd958071SHong Zhang     if (current_space->local_remaining<cnzi) {
5529566063dSJacob Faibussowitsch       PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi,current_space->total_array_size),&current_space));
553bd958071SHong Zhang       ndouble++;
554bd958071SHong Zhang     }
555bd958071SHong Zhang 
556bd958071SHong Zhang     /* Copy data into free space, then initialize lnk */
5579566063dSJacob Faibussowitsch     PetscCall(PetscLLCondensedClean_Scalable(cnzi,current_space->array,lnk));
5582205254eSKarl Rupp 
559bd958071SHong Zhang     current_space->array           += cnzi;
560bd958071SHong Zhang     current_space->local_used      += cnzi;
561bd958071SHong Zhang     current_space->local_remaining -= cnzi;
5622205254eSKarl Rupp 
563bd958071SHong Zhang     ci[i+1] = ci[i] + cnzi;
564bd958071SHong Zhang   }
565bd958071SHong Zhang 
566bd958071SHong Zhang   /* Column indices are in the list of free space */
567bd958071SHong Zhang   /* Allocate space for cj, initialize cj, and */
568bd958071SHong Zhang   /* destroy list of free space and other temporary array(s) */
5699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am]+1,&cj));
5709566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,cj));
5719566063dSJacob Faibussowitsch   PetscCall(PetscLLCondensedDestroy_Scalable(lnk));
572e9e4536cSHong Zhang 
573e9e4536cSHong Zhang   /* Allocate space for ca */
574bd958071SHong Zhang   /*-----------------------*/
5759566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(ci[am]+1,&ca));
576e9e4536cSHong Zhang 
577e9e4536cSHong Zhang   /* put together the new symbolic matrix */
5789566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,ca,((PetscObject)A)->type_name,C));
5799566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
580e9e4536cSHong Zhang 
581e9e4536cSHong Zhang   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
582e9e4536cSHong Zhang   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
5834222ddf1SHong Zhang   c          = (Mat_SeqAIJ*)(C->data);
584e9e4536cSHong Zhang   c->free_a  = PETSC_TRUE;
585e9e4536cSHong Zhang   c->free_ij = PETSC_TRUE;
586e9e4536cSHong Zhang   c->nonew   = 0;
5872205254eSKarl Rupp 
5884222ddf1SHong Zhang   /* slower, less memory */
5894222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable;
590e9e4536cSHong Zhang 
591e9e4536cSHong Zhang   /* set MatInfo */
592e9e4536cSHong Zhang   afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5;
593e9e4536cSHong Zhang   if (afill < 1.0) afill = 1.0;
5944222ddf1SHong Zhang   C->info.mallocs           = ndouble;
5954222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
5964222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
597e9e4536cSHong Zhang 
598e9e4536cSHong Zhang #if defined(PETSC_USE_INFO)
599e9e4536cSHong Zhang   if (ci[am]) {
6009566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill));
6019566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
602e9e4536cSHong Zhang   } else {
6039566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
604e9e4536cSHong Zhang   }
605e9e4536cSHong Zhang #endif
606e9e4536cSHong Zhang   PetscFunctionReturn(0);
607e9e4536cSHong Zhang }
608e9e4536cSHong Zhang 
6094222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(Mat A,Mat B,PetscReal fill,Mat C)
6100ced3a2bSJed Brown {
6110ced3a2bSJed Brown   Mat_SeqAIJ         *a = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
6120ced3a2bSJed Brown   const PetscInt     *ai=a->i,*bi=b->i,*aj=a->j,*bj=b->j;
6130ced3a2bSJed Brown   PetscInt           *ci,*cj,*bb;
6140ced3a2bSJed Brown   PetscInt           am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N;
6150ced3a2bSJed Brown   PetscReal          afill;
6160ced3a2bSJed Brown   PetscInt           i,j,col,ndouble = 0;
6170298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
6180ced3a2bSJed Brown   PetscHeap          h;
6190ced3a2bSJed Brown 
6200ced3a2bSJed Brown   PetscFunctionBegin;
621cd093f1dSJed Brown   /* Get ci and cj - by merging sorted rows using a heap */
6220ced3a2bSJed Brown   /*---------------------------------------------------------------------------------------------*/
6230ced3a2bSJed Brown   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
6249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&ci));
6250ced3a2bSJed Brown   ci[0] = 0;
6260ced3a2bSJed Brown 
6270ced3a2bSJed Brown   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
6289566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space));
6290ced3a2bSJed Brown   current_space = free_space;
6300ced3a2bSJed Brown 
6319566063dSJacob Faibussowitsch   PetscCall(PetscHeapCreate(a->rmax,&h));
6329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a->rmax,&bb));
6330ced3a2bSJed Brown 
6340ced3a2bSJed Brown   /* Determine ci and cj */
6350ced3a2bSJed Brown   for (i=0; i<am; i++) {
6360ced3a2bSJed Brown     const PetscInt anzi  = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
6370ced3a2bSJed Brown     const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */
6380ced3a2bSJed Brown     ci[i+1] = ci[i];
6390ced3a2bSJed Brown     /* Populate the min heap */
6400ced3a2bSJed Brown     for (j=0; j<anzi; j++) {
6410ced3a2bSJed Brown       bb[j] = bi[acol[j]];         /* bb points at the start of the row */
6420ced3a2bSJed Brown       if (bb[j] < bi[acol[j]+1]) { /* Add if row is nonempty */
6439566063dSJacob Faibussowitsch         PetscCall(PetscHeapAdd(h,j,bj[bb[j]++]));
6440ced3a2bSJed Brown       }
6450ced3a2bSJed Brown     }
6460ced3a2bSJed Brown     /* Pick off the min element, adding it to free space */
6479566063dSJacob Faibussowitsch     PetscCall(PetscHeapPop(h,&j,&col));
6480ced3a2bSJed Brown     while (j >= 0) {
6490ced3a2bSJed Brown       if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */
6509566063dSJacob Faibussowitsch         PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2,current_space->total_array_size),16 << 20),&current_space));
6510ced3a2bSJed Brown         ndouble++;
6520ced3a2bSJed Brown       }
6530ced3a2bSJed Brown       *(current_space->array++) = col;
6540ced3a2bSJed Brown       current_space->local_used++;
6550ced3a2bSJed Brown       current_space->local_remaining--;
6560ced3a2bSJed Brown       ci[i+1]++;
6570ced3a2bSJed Brown 
6580ced3a2bSJed Brown       /* stash if anything else remains in this row of B */
6599566063dSJacob Faibussowitsch       if (bb[j] < bi[acol[j]+1]) PetscCall(PetscHeapStash(h,j,bj[bb[j]++]));
6600ced3a2bSJed Brown       while (1) {               /* pop and stash any other rows of B that also had an entry in this column */
6610ced3a2bSJed Brown         PetscInt j2,col2;
6629566063dSJacob Faibussowitsch         PetscCall(PetscHeapPeek(h,&j2,&col2));
6630ced3a2bSJed Brown         if (col2 != col) break;
6649566063dSJacob Faibussowitsch         PetscCall(PetscHeapPop(h,&j2,&col2));
6659566063dSJacob Faibussowitsch         if (bb[j2] < bi[acol[j2]+1]) PetscCall(PetscHeapStash(h,j2,bj[bb[j2]++]));
6660ced3a2bSJed Brown       }
6670ced3a2bSJed Brown       /* Put any stashed elements back into the min heap */
6689566063dSJacob Faibussowitsch       PetscCall(PetscHeapUnstash(h));
6699566063dSJacob Faibussowitsch       PetscCall(PetscHeapPop(h,&j,&col));
6700ced3a2bSJed Brown     }
6710ced3a2bSJed Brown   }
6729566063dSJacob Faibussowitsch   PetscCall(PetscFree(bb));
6739566063dSJacob Faibussowitsch   PetscCall(PetscHeapDestroy(&h));
6740ced3a2bSJed Brown 
6750ced3a2bSJed Brown   /* Column indices are in the list of free space */
6760ced3a2bSJed Brown   /* Allocate space for cj, initialize cj, and */
6770ced3a2bSJed Brown   /* destroy list of free space and other temporary array(s) */
6789566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am],&cj));
6799566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,cj));
6800ced3a2bSJed Brown 
6810ced3a2bSJed Brown   /* put together the new symbolic matrix */
6829566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C));
6839566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
6840ced3a2bSJed Brown 
6850ced3a2bSJed Brown   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
6860ced3a2bSJed Brown   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
6874222ddf1SHong Zhang   c          = (Mat_SeqAIJ*)(C->data);
6880ced3a2bSJed Brown   c->free_a  = PETSC_TRUE;
6890ced3a2bSJed Brown   c->free_ij = PETSC_TRUE;
6900ced3a2bSJed Brown   c->nonew   = 0;
69126fbe8dcSKarl Rupp 
6924222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
6930ced3a2bSJed Brown 
6940ced3a2bSJed Brown   /* set MatInfo */
6950ced3a2bSJed Brown   afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5;
6960ced3a2bSJed Brown   if (afill < 1.0) afill = 1.0;
6974222ddf1SHong Zhang   C->info.mallocs           = ndouble;
6984222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
6994222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
7000ced3a2bSJed Brown 
7010ced3a2bSJed Brown #if defined(PETSC_USE_INFO)
7020ced3a2bSJed Brown   if (ci[am]) {
7039566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill));
7049566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
7050ced3a2bSJed Brown   } else {
7069566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
7070ced3a2bSJed Brown   }
7080ced3a2bSJed Brown #endif
7090ced3a2bSJed Brown   PetscFunctionReturn(0);
7100ced3a2bSJed Brown }
711e9e4536cSHong Zhang 
7124222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(Mat A,Mat B,PetscReal fill,Mat C)
7138a07c6f1SJed Brown {
7148a07c6f1SJed Brown   Mat_SeqAIJ         *a  = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
7158a07c6f1SJed Brown   const PetscInt     *ai = a->i,*bi=b->i,*aj=a->j,*bj=b->j;
7168a07c6f1SJed Brown   PetscInt           *ci,*cj,*bb;
7178a07c6f1SJed Brown   PetscInt           am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N;
7188a07c6f1SJed Brown   PetscReal          afill;
7198a07c6f1SJed Brown   PetscInt           i,j,col,ndouble = 0;
7200298fd71SBarry Smith   PetscFreeSpaceList free_space=NULL,current_space=NULL;
7218a07c6f1SJed Brown   PetscHeap          h;
7228a07c6f1SJed Brown   PetscBT            bt;
7238a07c6f1SJed Brown 
7248a07c6f1SJed Brown   PetscFunctionBegin;
725cd093f1dSJed Brown   /* Get ci and cj - using a heap for the sorted rows, but use BT so that each index is only added once */
7268a07c6f1SJed Brown   /*---------------------------------------------------------------------------------------------*/
7278a07c6f1SJed Brown   /* Allocate arrays for fill computation and free space for accumulating nonzero column */
7289566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+2,&ci));
7298a07c6f1SJed Brown   ci[0] = 0;
7308a07c6f1SJed Brown 
7318a07c6f1SJed Brown   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
7329566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill,PetscIntSumTruncate(ai[am],bi[bm])),&free_space));
7332205254eSKarl Rupp 
7348a07c6f1SJed Brown   current_space = free_space;
7358a07c6f1SJed Brown 
7369566063dSJacob Faibussowitsch   PetscCall(PetscHeapCreate(a->rmax,&h));
7379566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a->rmax,&bb));
7389566063dSJacob Faibussowitsch   PetscCall(PetscBTCreate(bn,&bt));
7398a07c6f1SJed Brown 
7408a07c6f1SJed Brown   /* Determine ci and cj */
7418a07c6f1SJed Brown   for (i=0; i<am; i++) {
7428a07c6f1SJed Brown     const PetscInt anzi  = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
7438a07c6f1SJed Brown     const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */
7448a07c6f1SJed Brown     const PetscInt *fptr = current_space->array; /* Save beginning of the row so we can clear the BT later */
7458a07c6f1SJed Brown     ci[i+1] = ci[i];
7468a07c6f1SJed Brown     /* Populate the min heap */
7478a07c6f1SJed Brown     for (j=0; j<anzi; j++) {
7488a07c6f1SJed Brown       PetscInt brow = acol[j];
7498a07c6f1SJed Brown       for (bb[j] = bi[brow]; bb[j] < bi[brow+1]; bb[j]++) {
7508a07c6f1SJed Brown         PetscInt bcol = bj[bb[j]];
7518a07c6f1SJed Brown         if (!PetscBTLookupSet(bt,bcol)) { /* new entry */
7529566063dSJacob Faibussowitsch           PetscCall(PetscHeapAdd(h,j,bcol));
7538a07c6f1SJed Brown           bb[j]++;
7548a07c6f1SJed Brown           break;
7558a07c6f1SJed Brown         }
7568a07c6f1SJed Brown       }
7578a07c6f1SJed Brown     }
7588a07c6f1SJed Brown     /* Pick off the min element, adding it to free space */
7599566063dSJacob Faibussowitsch     PetscCall(PetscHeapPop(h,&j,&col));
7608a07c6f1SJed Brown     while (j >= 0) {
7618a07c6f1SJed Brown       if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */
7620298fd71SBarry Smith         fptr = NULL;                      /* need PetscBTMemzero */
7639566063dSJacob Faibussowitsch         PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2,current_space->total_array_size),16 << 20),&current_space));
7648a07c6f1SJed Brown         ndouble++;
7658a07c6f1SJed Brown       }
7668a07c6f1SJed Brown       *(current_space->array++) = col;
7678a07c6f1SJed Brown       current_space->local_used++;
7688a07c6f1SJed Brown       current_space->local_remaining--;
7698a07c6f1SJed Brown       ci[i+1]++;
7708a07c6f1SJed Brown 
7718a07c6f1SJed Brown       /* stash if anything else remains in this row of B */
7728a07c6f1SJed Brown       for (; bb[j] < bi[acol[j]+1]; bb[j]++) {
7738a07c6f1SJed Brown         PetscInt bcol = bj[bb[j]];
7748a07c6f1SJed Brown         if (!PetscBTLookupSet(bt,bcol)) { /* new entry */
7759566063dSJacob Faibussowitsch           PetscCall(PetscHeapAdd(h,j,bcol));
7768a07c6f1SJed Brown           bb[j]++;
7778a07c6f1SJed Brown           break;
7788a07c6f1SJed Brown         }
7798a07c6f1SJed Brown       }
7809566063dSJacob Faibussowitsch       PetscCall(PetscHeapPop(h,&j,&col));
7818a07c6f1SJed Brown     }
7828a07c6f1SJed Brown     if (fptr) {                 /* Clear the bits for this row */
7839566063dSJacob Faibussowitsch       for (; fptr<current_space->array; fptr++) PetscCall(PetscBTClear(bt,*fptr));
7848a07c6f1SJed Brown     } else {                    /* We reallocated so we don't remember (easily) how to clear only the bits we changed */
7859566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(bn,bt));
7868a07c6f1SJed Brown     }
7878a07c6f1SJed Brown   }
7889566063dSJacob Faibussowitsch   PetscCall(PetscFree(bb));
7899566063dSJacob Faibussowitsch   PetscCall(PetscHeapDestroy(&h));
7909566063dSJacob Faibussowitsch   PetscCall(PetscBTDestroy(&bt));
7918a07c6f1SJed Brown 
7928a07c6f1SJed Brown   /* Column indices are in the list of free space */
7938a07c6f1SJed Brown   /* Allocate space for cj, initialize cj, and */
7948a07c6f1SJed Brown   /* destroy list of free space and other temporary array(s) */
7959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ci[am],&cj));
7969566063dSJacob Faibussowitsch   PetscCall(PetscFreeSpaceContiguous(&free_space,cj));
7978a07c6f1SJed Brown 
7988a07c6f1SJed Brown   /* put together the new symbolic matrix */
7999566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C));
8009566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
8018a07c6f1SJed Brown 
8028a07c6f1SJed Brown   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
8038a07c6f1SJed Brown   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
8044222ddf1SHong Zhang   c          = (Mat_SeqAIJ*)(C->data);
8058a07c6f1SJed Brown   c->free_a  = PETSC_TRUE;
8068a07c6f1SJed Brown   c->free_ij = PETSC_TRUE;
8078a07c6f1SJed Brown   c->nonew   = 0;
80826fbe8dcSKarl Rupp 
8094222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
8108a07c6f1SJed Brown 
8118a07c6f1SJed Brown   /* set MatInfo */
8128a07c6f1SJed Brown   afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5;
8138a07c6f1SJed Brown   if (afill < 1.0) afill = 1.0;
8144222ddf1SHong Zhang   C->info.mallocs           = ndouble;
8154222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
8164222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
8178a07c6f1SJed Brown 
8188a07c6f1SJed Brown #if defined(PETSC_USE_INFO)
8198a07c6f1SJed Brown   if (ci[am]) {
8209566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill));
8219566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
8228a07c6f1SJed Brown   } else {
8239566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
8248a07c6f1SJed Brown   }
8258a07c6f1SJed Brown #endif
8268a07c6f1SJed Brown   PetscFunctionReturn(0);
8278a07c6f1SJed Brown }
8288a07c6f1SJed Brown 
8294222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(Mat A,Mat B,PetscReal fill,Mat C)
830d7ed1a4dSandi selinger {
831d7ed1a4dSandi selinger   Mat_SeqAIJ         *a=(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
832d7ed1a4dSandi selinger   const PetscInt     *ai=a->i,*bi=b->i,*aj=a->j,*bj=b->j,*inputi,*inputj,*inputcol,*inputcol_L1;
833d7ed1a4dSandi selinger   PetscInt           *ci,*cj,*outputj,worki_L1[9],worki_L2[9];
834d7ed1a4dSandi selinger   PetscInt           c_maxmem,a_maxrownnz=0,a_rownnz;
835d7ed1a4dSandi selinger   const PetscInt     workcol[8]={0,1,2,3,4,5,6,7};
836d7ed1a4dSandi selinger   const PetscInt     am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N;
837d7ed1a4dSandi selinger   const PetscInt     *brow_ptr[8],*brow_end[8];
838d7ed1a4dSandi selinger   PetscInt           window[8];
839d7ed1a4dSandi selinger   PetscInt           window_min,old_window_min,ci_nnz,outputi_nnz=0,L1_nrows,L2_nrows;
840d7ed1a4dSandi selinger   PetscInt           i,k,ndouble=0,L1_rowsleft,rowsleft;
841d7ed1a4dSandi selinger   PetscReal          afill;
842f83700f2Sandi selinger   PetscInt           *workj_L1,*workj_L2,*workj_L3;
8437660c4dbSandi selinger   PetscInt           L1_nnz,L2_nnz;
844d7ed1a4dSandi selinger 
845d7ed1a4dSandi selinger   /* Step 1: Get upper bound on memory required for allocation.
846d7ed1a4dSandi selinger              Because of the way virtual memory works,
847d7ed1a4dSandi selinger              only the memory pages that are actually needed will be physically allocated. */
848d7ed1a4dSandi selinger   PetscFunctionBegin;
8499566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+1,&ci));
850d7ed1a4dSandi selinger   for (i=0; i<am; i++) {
851d7ed1a4dSandi selinger     const PetscInt anzi  = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
852d7ed1a4dSandi selinger     const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */
853d7ed1a4dSandi selinger     a_rownnz = 0;
854d7ed1a4dSandi selinger     for (k=0; k<anzi; ++k) {
855d7ed1a4dSandi selinger       a_rownnz += bi[acol[k]+1] - bi[acol[k]];
856d7ed1a4dSandi selinger       if (a_rownnz > bn) {
857d7ed1a4dSandi selinger         a_rownnz = bn;
858d7ed1a4dSandi selinger         break;
859d7ed1a4dSandi selinger       }
860d7ed1a4dSandi selinger     }
861d7ed1a4dSandi selinger     a_maxrownnz = PetscMax(a_maxrownnz, a_rownnz);
862d7ed1a4dSandi selinger   }
863d7ed1a4dSandi selinger   /* temporary work areas for merging rows */
8649566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a_maxrownnz*8,&workj_L1));
8659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a_maxrownnz*8,&workj_L2));
8669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(a_maxrownnz,&workj_L3));
867d7ed1a4dSandi selinger 
8687660c4dbSandi selinger   /* This should be enough for almost all matrices. If not, memory is reallocated later. */
8697660c4dbSandi selinger   c_maxmem = 8*(ai[am]+bi[bm]);
870d7ed1a4dSandi selinger   /* Step 2: Populate pattern for C */
8719566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(c_maxmem,&cj));
872d7ed1a4dSandi selinger 
873d7ed1a4dSandi selinger   ci_nnz       = 0;
874d7ed1a4dSandi selinger   ci[0]        = 0;
875d7ed1a4dSandi selinger   worki_L1[0]  = 0;
876d7ed1a4dSandi selinger   worki_L2[0]  = 0;
877d7ed1a4dSandi selinger   for (i=0; i<am; i++) {
878d7ed1a4dSandi selinger     const PetscInt anzi  = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
879d7ed1a4dSandi selinger     const PetscInt *acol = aj + ai[i];      /* column indices of nonzero entries in this row */
880d7ed1a4dSandi selinger     rowsleft             = anzi;
881d7ed1a4dSandi selinger     inputcol_L1          = acol;
882d7ed1a4dSandi selinger     L2_nnz               = 0;
8837660c4dbSandi selinger     L2_nrows             = 1;  /* Number of rows to be merged on Level 3. output of L3 already exists -> initial value 1   */
8847660c4dbSandi selinger     worki_L2[1]          = 0;
88508fe1b3cSKarl Rupp     outputi_nnz          = 0;
886d7ed1a4dSandi selinger 
887d7ed1a4dSandi selinger     /* If the number of indices in C so far + the max number of columns in the next row > c_maxmem  -> allocate more memory */
888d7ed1a4dSandi selinger     while (ci_nnz+a_maxrownnz > c_maxmem) {
889d7ed1a4dSandi selinger       c_maxmem *= 2;
890d7ed1a4dSandi selinger       ndouble++;
8919566063dSJacob Faibussowitsch       PetscCall(PetscRealloc(sizeof(PetscInt)*c_maxmem,&cj));
892d7ed1a4dSandi selinger     }
893d7ed1a4dSandi selinger 
894d7ed1a4dSandi selinger     while (rowsleft) {
895d7ed1a4dSandi selinger       L1_rowsleft = PetscMin(64, rowsleft); /* In the inner loop max 64 rows of B can be merged */
896d7ed1a4dSandi selinger       L1_nrows    = 0;
8977660c4dbSandi selinger       L1_nnz      = 0;
898d7ed1a4dSandi selinger       inputcol    = inputcol_L1;
899d7ed1a4dSandi selinger       inputi      = bi;
900d7ed1a4dSandi selinger       inputj      = bj;
901d7ed1a4dSandi selinger 
902d7ed1a4dSandi selinger       /* The following macro is used to specialize for small rows in A.
903d7ed1a4dSandi selinger          This helps with compiler unrolling, improving performance substantially.
904f83700f2Sandi selinger           Input:  inputj   inputi  inputcol  bn
905d7ed1a4dSandi selinger           Output: outputj  outputi_nnz                       */
906d7ed1a4dSandi selinger        #define MatMatMultSymbolic_RowMergeMacro(ANNZ)                        \
907d7ed1a4dSandi selinger          window_min  = bn;                                                   \
9087660c4dbSandi selinger          outputi_nnz = 0;                                                    \
9097660c4dbSandi selinger          for (k=0; k<ANNZ; ++k) {                                            \
910d7ed1a4dSandi selinger            brow_ptr[k] = inputj + inputi[inputcol[k]];                       \
911d7ed1a4dSandi selinger            brow_end[k] = inputj + inputi[inputcol[k]+1];                     \
912d7ed1a4dSandi selinger            window[k]   = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn;   \
913d7ed1a4dSandi selinger            window_min  = PetscMin(window[k], window_min);                    \
914d7ed1a4dSandi selinger          }                                                                   \
915d7ed1a4dSandi selinger          while (window_min < bn) {                                           \
916d7ed1a4dSandi selinger            outputj[outputi_nnz++] = window_min;                              \
917d7ed1a4dSandi selinger            /* advance front and compute new minimum */                       \
918d7ed1a4dSandi selinger            old_window_min = window_min;                                      \
919d7ed1a4dSandi selinger            window_min = bn;                                                  \
920d7ed1a4dSandi selinger            for (k=0; k<ANNZ; ++k) {                                          \
921d7ed1a4dSandi selinger              if (window[k] == old_window_min) {                              \
922d7ed1a4dSandi selinger                brow_ptr[k]++;                                                \
923d7ed1a4dSandi selinger                window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \
924d7ed1a4dSandi selinger              }                                                               \
925d7ed1a4dSandi selinger              window_min = PetscMin(window[k], window_min);                   \
926d7ed1a4dSandi selinger            }                                                                 \
927d7ed1a4dSandi selinger          }
928d7ed1a4dSandi selinger 
929d7ed1a4dSandi selinger       /************** L E V E L  1 ***************/
930d7ed1a4dSandi selinger       /* Merge up to 8 rows of B to L1 work array*/
931d7ed1a4dSandi selinger       while (L1_rowsleft) {
9327660c4dbSandi selinger         outputi_nnz = 0;
9337660c4dbSandi selinger         if (anzi > 8)  outputj = workj_L1 + L1_nnz;     /* Level 1 rowmerge*/
9347660c4dbSandi selinger         else           outputj = cj + ci_nnz;           /* Merge directly to C */
9357660c4dbSandi selinger 
936d7ed1a4dSandi selinger         switch (L1_rowsleft) {
937d7ed1a4dSandi selinger         case 1:  brow_ptr[0] = inputj + inputi[inputcol[0]];
938d7ed1a4dSandi selinger                  brow_end[0] = inputj + inputi[inputcol[0]+1];
939d7ed1a4dSandi selinger                  for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */
940d7ed1a4dSandi selinger                  inputcol    += L1_rowsleft;
941d7ed1a4dSandi selinger                  rowsleft    -= L1_rowsleft;
942d7ed1a4dSandi selinger                  L1_rowsleft  = 0;
943d7ed1a4dSandi selinger                  break;
944d7ed1a4dSandi selinger         case 2:  MatMatMultSymbolic_RowMergeMacro(2);
945d7ed1a4dSandi selinger                  inputcol    += L1_rowsleft;
946d7ed1a4dSandi selinger                  rowsleft    -= L1_rowsleft;
947d7ed1a4dSandi selinger                  L1_rowsleft  = 0;
948d7ed1a4dSandi selinger                  break;
949d7ed1a4dSandi selinger         case 3: MatMatMultSymbolic_RowMergeMacro(3);
950d7ed1a4dSandi selinger                  inputcol    += L1_rowsleft;
951d7ed1a4dSandi selinger                  rowsleft    -= L1_rowsleft;
952d7ed1a4dSandi selinger                  L1_rowsleft  = 0;
953d7ed1a4dSandi selinger                  break;
954d7ed1a4dSandi selinger         case 4:  MatMatMultSymbolic_RowMergeMacro(4);
955d7ed1a4dSandi selinger                  inputcol    += L1_rowsleft;
956d7ed1a4dSandi selinger                  rowsleft    -= L1_rowsleft;
957d7ed1a4dSandi selinger                  L1_rowsleft  = 0;
958d7ed1a4dSandi selinger                  break;
959d7ed1a4dSandi selinger         case 5:  MatMatMultSymbolic_RowMergeMacro(5);
960d7ed1a4dSandi selinger                  inputcol    += L1_rowsleft;
961d7ed1a4dSandi selinger                  rowsleft    -= L1_rowsleft;
962d7ed1a4dSandi selinger                  L1_rowsleft  = 0;
963d7ed1a4dSandi selinger                  break;
964d7ed1a4dSandi selinger         case 6:  MatMatMultSymbolic_RowMergeMacro(6);
965d7ed1a4dSandi selinger                  inputcol    += L1_rowsleft;
966d7ed1a4dSandi selinger                  rowsleft    -= L1_rowsleft;
967d7ed1a4dSandi selinger                  L1_rowsleft  = 0;
968d7ed1a4dSandi selinger                  break;
969d7ed1a4dSandi selinger         case 7:  MatMatMultSymbolic_RowMergeMacro(7);
970d7ed1a4dSandi selinger                  inputcol    += L1_rowsleft;
971d7ed1a4dSandi selinger                  rowsleft    -= L1_rowsleft;
972d7ed1a4dSandi selinger                  L1_rowsleft  = 0;
973d7ed1a4dSandi selinger                  break;
974d7ed1a4dSandi selinger         default: MatMatMultSymbolic_RowMergeMacro(8);
975d7ed1a4dSandi selinger                  inputcol    += 8;
976d7ed1a4dSandi selinger                  rowsleft    -= 8;
977d7ed1a4dSandi selinger                  L1_rowsleft -= 8;
978d7ed1a4dSandi selinger                  break;
979d7ed1a4dSandi selinger         }
980d7ed1a4dSandi selinger         inputcol_L1           = inputcol;
9817660c4dbSandi selinger         L1_nnz               += outputi_nnz;
9827660c4dbSandi selinger         worki_L1[++L1_nrows]  = L1_nnz;
983d7ed1a4dSandi selinger       }
984d7ed1a4dSandi selinger 
985d7ed1a4dSandi selinger       /********************** L E V E L  2 ************************/
986d7ed1a4dSandi selinger       /* Merge from L1 work array to either C or to L2 work array */
987d7ed1a4dSandi selinger       if (anzi > 8) {
988d7ed1a4dSandi selinger         inputi      = worki_L1;
989d7ed1a4dSandi selinger         inputj      = workj_L1;
990d7ed1a4dSandi selinger         inputcol    = workcol;
991d7ed1a4dSandi selinger         outputi_nnz = 0;
992d7ed1a4dSandi selinger 
993d7ed1a4dSandi selinger         if (anzi <= 64) outputj = cj + ci_nnz;        /* Merge from L1 work array to C */
994d7ed1a4dSandi selinger         else            outputj = workj_L2 + L2_nnz;  /* Merge from L1 work array to L2 work array */
995d7ed1a4dSandi selinger 
996d7ed1a4dSandi selinger         switch (L1_nrows) {
997d7ed1a4dSandi selinger         case 1:  brow_ptr[0] = inputj + inputi[inputcol[0]];
998d7ed1a4dSandi selinger                  brow_end[0] = inputj + inputi[inputcol[0]+1];
999d7ed1a4dSandi selinger                  for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */
1000d7ed1a4dSandi selinger                  break;
1001d7ed1a4dSandi selinger         case 2:  MatMatMultSymbolic_RowMergeMacro(2); break;
1002d7ed1a4dSandi selinger         case 3:  MatMatMultSymbolic_RowMergeMacro(3); break;
1003d7ed1a4dSandi selinger         case 4:  MatMatMultSymbolic_RowMergeMacro(4); break;
1004d7ed1a4dSandi selinger         case 5:  MatMatMultSymbolic_RowMergeMacro(5); break;
1005d7ed1a4dSandi selinger         case 6:  MatMatMultSymbolic_RowMergeMacro(6); break;
1006d7ed1a4dSandi selinger         case 7:  MatMatMultSymbolic_RowMergeMacro(7); break;
1007d7ed1a4dSandi selinger         case 8:  MatMatMultSymbolic_RowMergeMacro(8); break;
1008d7ed1a4dSandi selinger         default: SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatMatMult logic error: Not merging 1-8 rows from L1 work array!");
1009d7ed1a4dSandi selinger         }
1010d7ed1a4dSandi selinger         L2_nnz               += outputi_nnz;
1011d7ed1a4dSandi selinger         worki_L2[++L2_nrows]  = L2_nnz;
1012d7ed1a4dSandi selinger 
10137660c4dbSandi selinger         /************************ L E V E L  3 **********************/
10147660c4dbSandi selinger         /* Merge from L2 work array to either C or to L2 work array */
1015d7ed1a4dSandi selinger         if (anzi > 64 && (L2_nrows == 8 || rowsleft == 0)) {
1016d7ed1a4dSandi selinger           inputi      = worki_L2;
1017d7ed1a4dSandi selinger           inputj      = workj_L2;
1018d7ed1a4dSandi selinger           inputcol    = workcol;
1019d7ed1a4dSandi selinger           outputi_nnz = 0;
1020f83700f2Sandi selinger           if (rowsleft) outputj = workj_L3;
1021d7ed1a4dSandi selinger           else          outputj = cj + ci_nnz;
1022d7ed1a4dSandi selinger           switch (L2_nrows) {
1023d7ed1a4dSandi selinger           case 1:  brow_ptr[0] = inputj + inputi[inputcol[0]];
1024d7ed1a4dSandi selinger                    brow_end[0] = inputj + inputi[inputcol[0]+1];
1025d7ed1a4dSandi selinger                    for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */
1026d7ed1a4dSandi selinger                    break;
1027d7ed1a4dSandi selinger           case 2:  MatMatMultSymbolic_RowMergeMacro(2); break;
1028d7ed1a4dSandi selinger           case 3:  MatMatMultSymbolic_RowMergeMacro(3); break;
1029d7ed1a4dSandi selinger           case 4:  MatMatMultSymbolic_RowMergeMacro(4); break;
1030d7ed1a4dSandi selinger           case 5:  MatMatMultSymbolic_RowMergeMacro(5); break;
1031d7ed1a4dSandi selinger           case 6:  MatMatMultSymbolic_RowMergeMacro(6); break;
1032d7ed1a4dSandi selinger           case 7:  MatMatMultSymbolic_RowMergeMacro(7); break;
1033d7ed1a4dSandi selinger           case 8:  MatMatMultSymbolic_RowMergeMacro(8); break;
1034d7ed1a4dSandi selinger           default: SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatMatMult logic error: Not merging 1-8 rows from L2 work array!");
1035d7ed1a4dSandi selinger           }
1036d7ed1a4dSandi selinger           L2_nrows    = 1;
10377660c4dbSandi selinger           L2_nnz      = outputi_nnz;
10387660c4dbSandi selinger           worki_L2[1] = outputi_nnz;
10397660c4dbSandi selinger           /* Copy to workj_L2 */
1040d7ed1a4dSandi selinger           if (rowsleft) {
10417660c4dbSandi selinger             for (k=0; k<outputi_nnz; ++k)  workj_L2[k] = outputj[k];
1042d7ed1a4dSandi selinger           }
1043d7ed1a4dSandi selinger         }
1044d7ed1a4dSandi selinger       }
1045d7ed1a4dSandi selinger     }  /* while (rowsleft) */
1046d7ed1a4dSandi selinger #undef MatMatMultSymbolic_RowMergeMacro
1047d7ed1a4dSandi selinger 
1048d7ed1a4dSandi selinger     /* terminate current row */
1049d7ed1a4dSandi selinger     ci_nnz += outputi_nnz;
1050d7ed1a4dSandi selinger     ci[i+1] = ci_nnz;
1051d7ed1a4dSandi selinger   }
1052d7ed1a4dSandi selinger 
1053d7ed1a4dSandi selinger   /* Step 3: Create the new symbolic matrix */
10549566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C));
10559566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
1056d7ed1a4dSandi selinger 
1057d7ed1a4dSandi selinger   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
1058d7ed1a4dSandi selinger   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
10594222ddf1SHong Zhang   c          = (Mat_SeqAIJ*)(C->data);
1060d7ed1a4dSandi selinger   c->free_a  = PETSC_TRUE;
1061d7ed1a4dSandi selinger   c->free_ij = PETSC_TRUE;
1062d7ed1a4dSandi selinger   c->nonew   = 0;
1063d7ed1a4dSandi selinger 
10644222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
1065d7ed1a4dSandi selinger 
1066d7ed1a4dSandi selinger   /* set MatInfo */
1067d7ed1a4dSandi selinger   afill = (PetscReal)ci[am]/(ai[am]+bi[bm]) + 1.e-5;
1068d7ed1a4dSandi selinger   if (afill < 1.0) afill = 1.0;
10694222ddf1SHong Zhang   C->info.mallocs           = ndouble;
10704222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
10714222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1072d7ed1a4dSandi selinger 
1073d7ed1a4dSandi selinger #if defined(PETSC_USE_INFO)
1074d7ed1a4dSandi selinger   if (ci[am]) {
10759566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill));
10769566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
1077d7ed1a4dSandi selinger   } else {
10789566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
1079d7ed1a4dSandi selinger   }
1080d7ed1a4dSandi selinger #endif
1081d7ed1a4dSandi selinger 
1082d7ed1a4dSandi selinger   /* Step 4: Free temporary work areas */
10839566063dSJacob Faibussowitsch   PetscCall(PetscFree(workj_L1));
10849566063dSJacob Faibussowitsch   PetscCall(PetscFree(workj_L2));
10859566063dSJacob Faibussowitsch   PetscCall(PetscFree(workj_L3));
1086d7ed1a4dSandi selinger   PetscFunctionReturn(0);
1087d7ed1a4dSandi selinger }
1088d7ed1a4dSandi selinger 
1089cd093f1dSJed Brown /* concatenate unique entries and then sort */
10904222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(Mat A,Mat B,PetscReal fill,Mat C)
1091cd093f1dSJed Brown {
1092cd093f1dSJed Brown   Mat_SeqAIJ     *a  = (Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c;
1093cd093f1dSJed Brown   const PetscInt *ai = a->i,*bi=b->i,*aj=a->j,*bj=b->j;
10948c78258cSHong Zhang   PetscInt       *ci,*cj,bcol;
1095cd093f1dSJed Brown   PetscInt       am=A->rmap->N,bn=B->cmap->N,bm=B->rmap->N;
1096cd093f1dSJed Brown   PetscReal      afill;
1097cd093f1dSJed Brown   PetscInt       i,j,ndouble = 0;
1098cd093f1dSJed Brown   PetscSegBuffer seg,segrow;
1099cd093f1dSJed Brown   char           *seen;
1100cd093f1dSJed Brown 
1101cd093f1dSJed Brown   PetscFunctionBegin;
11029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(am+1,&ci));
1103cd093f1dSJed Brown   ci[0] = 0;
1104cd093f1dSJed Brown 
1105cd093f1dSJed Brown   /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */
11069566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferCreate(sizeof(PetscInt),(PetscInt)(fill*(ai[am]+bi[bm])),&seg));
11079566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferCreate(sizeof(PetscInt),100,&segrow));
11089566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(bn,&seen));
1109cd093f1dSJed Brown 
1110cd093f1dSJed Brown   /* Determine ci and cj */
1111cd093f1dSJed Brown   for (i=0; i<am; i++) {
1112cd093f1dSJed Brown     const PetscInt anzi  = ai[i+1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */
1113cd093f1dSJed Brown     const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */
1114cd093f1dSJed Brown     PetscInt packlen = 0,*PETSC_RESTRICT crow;
11158c78258cSHong Zhang 
1116cd093f1dSJed Brown     /* Pack segrow */
1117cd093f1dSJed Brown     for (j=0; j<anzi; j++) {
1118cd093f1dSJed Brown       PetscInt brow = acol[j],bjstart = bi[brow],bjend = bi[brow+1],k;
1119cd093f1dSJed Brown       for (k=bjstart; k<bjend; k++) {
11208c78258cSHong Zhang         bcol = bj[k];
1121cd093f1dSJed Brown         if (!seen[bcol]) { /* new entry */
1122cd093f1dSJed Brown           PetscInt *PETSC_RESTRICT slot;
11239566063dSJacob Faibussowitsch           PetscCall(PetscSegBufferGetInts(segrow,1,&slot));
1124cd093f1dSJed Brown           *slot = bcol;
1125cd093f1dSJed Brown           seen[bcol] = 1;
1126cd093f1dSJed Brown           packlen++;
1127cd093f1dSJed Brown         }
1128cd093f1dSJed Brown       }
1129cd093f1dSJed Brown     }
11308c78258cSHong Zhang 
11318c78258cSHong Zhang     /* Check i-th diagonal entry */
11328c78258cSHong Zhang     if (C->force_diagonals && !seen[i]) {
11338c78258cSHong Zhang       PetscInt *PETSC_RESTRICT slot;
11349566063dSJacob Faibussowitsch       PetscCall(PetscSegBufferGetInts(segrow,1,&slot));
11358c78258cSHong Zhang       *slot   = i;
11368c78258cSHong Zhang       seen[i] = 1;
11378c78258cSHong Zhang       packlen++;
11388c78258cSHong Zhang     }
11398c78258cSHong Zhang 
11409566063dSJacob Faibussowitsch     PetscCall(PetscSegBufferGetInts(seg,packlen,&crow));
11419566063dSJacob Faibussowitsch     PetscCall(PetscSegBufferExtractTo(segrow,crow));
11429566063dSJacob Faibussowitsch     PetscCall(PetscSortInt(packlen,crow));
1143cd093f1dSJed Brown     ci[i+1] = ci[i] + packlen;
1144cd093f1dSJed Brown     for (j=0; j<packlen; j++) seen[crow[j]] = 0;
1145cd093f1dSJed Brown   }
11469566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferDestroy(&segrow));
11479566063dSJacob Faibussowitsch   PetscCall(PetscFree(seen));
1148cd093f1dSJed Brown 
1149cd093f1dSJed Brown   /* Column indices are in the segmented buffer */
11509566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferExtractAlloc(seg,&cj));
11519566063dSJacob Faibussowitsch   PetscCall(PetscSegBufferDestroy(&seg));
1152cd093f1dSJed Brown 
1153cd093f1dSJed Brown   /* put together the new symbolic matrix */
11549566063dSJacob Faibussowitsch   PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A),am,bn,ci,cj,NULL,((PetscObject)A)->type_name,C));
11559566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizesFromMats(C,A,B));
1156cd093f1dSJed Brown 
1157cd093f1dSJed Brown   /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */
1158cd093f1dSJed Brown   /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */
11594222ddf1SHong Zhang   c          = (Mat_SeqAIJ*)(C->data);
1160cd093f1dSJed Brown   c->free_a  = PETSC_TRUE;
1161cd093f1dSJed Brown   c->free_ij = PETSC_TRUE;
1162cd093f1dSJed Brown   c->nonew   = 0;
1163cd093f1dSJed Brown 
11644222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted;
1165cd093f1dSJed Brown 
1166cd093f1dSJed Brown   /* set MatInfo */
11672a09556fSStefano Zampini   afill = (PetscReal)ci[am]/PetscMax(ai[am]+bi[bm],1) + 1.e-5;
1168cd093f1dSJed Brown   if (afill < 1.0) afill = 1.0;
11694222ddf1SHong Zhang   C->info.mallocs           = ndouble;
11704222ddf1SHong Zhang   C->info.fill_ratio_given  = fill;
11714222ddf1SHong Zhang   C->info.fill_ratio_needed = afill;
1172cd093f1dSJed Brown 
1173cd093f1dSJed Brown #if defined(PETSC_USE_INFO)
1174cd093f1dSJed Brown   if (ci[am]) {
11759566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n",ndouble,(double)fill,(double)afill));
11769566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n",(double)afill));
1177cd093f1dSJed Brown   } else {
11789566063dSJacob Faibussowitsch     PetscCall(PetscInfo(C,"Empty matrix product\n"));
1179cd093f1dSJed Brown   }
1180cd093f1dSJed Brown #endif
1181cd093f1dSJed Brown   PetscFunctionReturn(0);
1182cd093f1dSJed Brown }
1183cd093f1dSJed Brown 
11846718818eSStefano Zampini PetscErrorCode MatDestroy_SeqAIJ_MatMatMultTrans(void *data)
11852128a86cSHong Zhang {
11866718818eSStefano Zampini   Mat_MatMatTransMult *abt=(Mat_MatMatTransMult *)data;
11872128a86cSHong Zhang 
11882128a86cSHong Zhang   PetscFunctionBegin;
11899566063dSJacob Faibussowitsch   PetscCall(MatTransposeColoringDestroy(&abt->matcoloring));
11909566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&abt->Bt_den));
11919566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&abt->ABt_den));
11929566063dSJacob Faibussowitsch   PetscCall(PetscFree(abt));
11932128a86cSHong Zhang   PetscFunctionReturn(0);
11942128a86cSHong Zhang }
11952128a86cSHong Zhang 
11964222ddf1SHong Zhang PetscErrorCode MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat C)
1197bc011b1eSHong Zhang {
119881d82fe4SHong Zhang   Mat                 Bt;
119940192850SHong Zhang   Mat_MatMatTransMult *abt;
12004222ddf1SHong Zhang   Mat_Product         *product = C->product;
12016718818eSStefano Zampini   char                *alg;
1202d2853540SHong Zhang 
120381d82fe4SHong Zhang   PetscFunctionBegin;
120428b400f6SJacob Faibussowitsch   PetscCheck(product,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct");
120528b400f6SJacob Faibussowitsch   PetscCheck(!product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
12066718818eSStefano Zampini 
120781d82fe4SHong Zhang   /* create symbolic Bt */
1208*7fb60732SBarry Smith   PetscCall(MatTransposeSymbolic(B,&Bt));
12099566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSizes(Bt,PetscAbs(A->cmap->bs),PetscAbs(B->cmap->bs)));
12109566063dSJacob Faibussowitsch   PetscCall(MatSetType(Bt,((PetscObject)A)->type_name));
121181d82fe4SHong Zhang 
121281d82fe4SHong Zhang   /* get symbolic C=A*Bt */
12139566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy(product->alg,&alg));
12149566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(C,"sorted")); /* set algorithm for C = A*Bt */
12159566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(A,Bt,fill,C));
12169566063dSJacob Faibussowitsch   PetscCall(MatProductSetAlgorithm(C,alg)); /* resume original algorithm for ABt product */
12179566063dSJacob Faibussowitsch   PetscCall(PetscFree(alg));
121881d82fe4SHong Zhang 
1219a5b23f4aSJose E. Roman   /* create a supporting struct for reuse intermediate dense matrices with matcoloring */
12209566063dSJacob Faibussowitsch   PetscCall(PetscNew(&abt));
12212128a86cSHong Zhang 
12226718818eSStefano Zampini   product->data    = abt;
12236718818eSStefano Zampini   product->destroy = MatDestroy_SeqAIJ_MatMatMultTrans;
12246718818eSStefano Zampini 
12254222ddf1SHong Zhang   C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ;
12262128a86cSHong Zhang 
12274222ddf1SHong Zhang   abt->usecoloring = PETSC_FALSE;
12289566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"color",&abt->usecoloring));
122940192850SHong Zhang   if (abt->usecoloring) {
1230b9af6bddSHong Zhang     /* Create MatTransposeColoring from symbolic C=A*B^T */
1231b9af6bddSHong Zhang     MatTransposeColoring matcoloring;
1232335efc43SPeter Brune     MatColoring          coloring;
12332128a86cSHong Zhang     ISColoring           iscoloring;
12342128a86cSHong Zhang     Mat                  Bt_dense,C_dense;
1235e8354b3eSHong Zhang 
12364222ddf1SHong Zhang     /* inode causes memory problem */
12379566063dSJacob Faibussowitsch     PetscCall(MatSetOption(C,MAT_USE_INODES,PETSC_FALSE));
12384222ddf1SHong Zhang 
12399566063dSJacob Faibussowitsch     PetscCall(MatColoringCreate(C,&coloring));
12409566063dSJacob Faibussowitsch     PetscCall(MatColoringSetDistance(coloring,2));
12419566063dSJacob Faibussowitsch     PetscCall(MatColoringSetType(coloring,MATCOLORINGSL));
12429566063dSJacob Faibussowitsch     PetscCall(MatColoringSetFromOptions(coloring));
12439566063dSJacob Faibussowitsch     PetscCall(MatColoringApply(coloring,&iscoloring));
12449566063dSJacob Faibussowitsch     PetscCall(MatColoringDestroy(&coloring));
12459566063dSJacob Faibussowitsch     PetscCall(MatTransposeColoringCreate(C,iscoloring,&matcoloring));
12462205254eSKarl Rupp 
124740192850SHong Zhang     abt->matcoloring = matcoloring;
12482205254eSKarl Rupp 
12499566063dSJacob Faibussowitsch     PetscCall(ISColoringDestroy(&iscoloring));
12502128a86cSHong Zhang 
12512128a86cSHong Zhang     /* Create Bt_dense and C_dense = A*Bt_dense */
12529566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&Bt_dense));
12539566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(Bt_dense,A->cmap->n,matcoloring->ncolors,A->cmap->n,matcoloring->ncolors));
12549566063dSJacob Faibussowitsch     PetscCall(MatSetType(Bt_dense,MATSEQDENSE));
12559566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(Bt_dense,NULL));
12562205254eSKarl Rupp 
12572128a86cSHong Zhang     Bt_dense->assembled = PETSC_TRUE;
125840192850SHong Zhang     abt->Bt_den         = Bt_dense;
12592128a86cSHong Zhang 
12609566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&C_dense));
12619566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(C_dense,A->rmap->n,matcoloring->ncolors,A->rmap->n,matcoloring->ncolors));
12629566063dSJacob Faibussowitsch     PetscCall(MatSetType(C_dense,MATSEQDENSE));
12639566063dSJacob Faibussowitsch     PetscCall(MatSeqDenseSetPreallocation(C_dense,NULL));
12642205254eSKarl Rupp 
12652128a86cSHong Zhang     Bt_dense->assembled = PETSC_TRUE;
126640192850SHong Zhang     abt->ABt_den  = C_dense;
1267f94ccd6cSHong Zhang 
1268f94ccd6cSHong Zhang #if defined(PETSC_USE_INFO)
12691ce71dffSSatish Balay     {
12704222ddf1SHong Zhang       Mat_SeqAIJ *c = (Mat_SeqAIJ*)C->data;
12719566063dSJacob Faibussowitsch       PetscCall(PetscInfo(C,"Use coloring of C=A*B^T; B^T: %" PetscInt_FMT " %" PetscInt_FMT ", Bt_dense: %" PetscInt_FMT ",%" PetscInt_FMT "; Cnz %" PetscInt_FMT " / (cm*ncolors %" PetscInt_FMT ") = %g\n",B->cmap->n,B->rmap->n,Bt_dense->rmap->n,Bt_dense->cmap->n,c->nz,A->rmap->n*matcoloring->ncolors,(double)(((PetscReal)(c->nz))/((PetscReal)(A->rmap->n*matcoloring->ncolors)))));
12721ce71dffSSatish Balay     }
1273f94ccd6cSHong Zhang #endif
12742128a86cSHong Zhang   }
1275e99be685SHong Zhang   /* clean up */
12769566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&Bt));
12775df89d91SHong Zhang   PetscFunctionReturn(0);
12785df89d91SHong Zhang }
12795df89d91SHong Zhang 
12806fc122caSHong Zhang PetscErrorCode MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C)
12815df89d91SHong Zhang {
12825df89d91SHong Zhang   Mat_SeqAIJ          *a   =(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c=(Mat_SeqAIJ*)C->data;
1283e2cac8caSJed Brown   PetscInt            *ai  =a->i,*aj=a->j,*bi=b->i,*bj=b->j,anzi,bnzj,nexta,nextb,*acol,*bcol,brow;
128481d82fe4SHong Zhang   PetscInt            cm   =C->rmap->n,*ci=c->i,*cj=c->j,i,j,cnzi,*ccol;
12855df89d91SHong Zhang   PetscLogDouble      flops=0.0;
1286aa1aec99SHong Zhang   MatScalar           *aa  =a->a,*aval,*ba=b->a,*bval,*ca,*cval;
12876718818eSStefano Zampini   Mat_MatMatTransMult *abt;
12886718818eSStefano Zampini   Mat_Product         *product = C->product;
12895df89d91SHong Zhang 
12905df89d91SHong Zhang   PetscFunctionBegin;
129128b400f6SJacob Faibussowitsch   PetscCheck(product,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct");
12926718818eSStefano Zampini   abt = (Mat_MatMatTransMult *)product->data;
129328b400f6SJacob Faibussowitsch   PetscCheck(abt,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct");
129458ed3ceaSHong Zhang   /* clear old values in C */
129558ed3ceaSHong Zhang   if (!c->a) {
12969566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(ci[cm]+1,&ca));
129758ed3ceaSHong Zhang     c->a      = ca;
129858ed3ceaSHong Zhang     c->free_a = PETSC_TRUE;
129958ed3ceaSHong Zhang   } else {
130058ed3ceaSHong Zhang     ca =  c->a;
13019566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ca,ci[cm]+1));
130258ed3ceaSHong Zhang   }
130358ed3ceaSHong Zhang 
130440192850SHong Zhang   if (abt->usecoloring) {
130540192850SHong Zhang     MatTransposeColoring matcoloring = abt->matcoloring;
130640192850SHong Zhang     Mat                  Bt_dense,C_dense = abt->ABt_den;
1307c8db22f6SHong Zhang 
1308b9af6bddSHong Zhang     /* Get Bt_dense by Apply MatTransposeColoring to B */
130940192850SHong Zhang     Bt_dense = abt->Bt_den;
13109566063dSJacob Faibussowitsch     PetscCall(MatTransColoringApplySpToDen(matcoloring,B,Bt_dense));
1311c8db22f6SHong Zhang 
1312c8db22f6SHong Zhang     /* C_dense = A*Bt_dense */
13139566063dSJacob Faibussowitsch     PetscCall(MatMatMultNumeric_SeqAIJ_SeqDense(A,Bt_dense,C_dense));
1314c8db22f6SHong Zhang 
13152128a86cSHong Zhang     /* Recover C from C_dense */
13169566063dSJacob Faibussowitsch     PetscCall(MatTransColoringApplyDenToSp(matcoloring,C_dense,C));
1317c8db22f6SHong Zhang     PetscFunctionReturn(0);
1318c8db22f6SHong Zhang   }
1319c8db22f6SHong Zhang 
13201fa1209cSHong Zhang   for (i=0; i<cm; i++) {
132181d82fe4SHong Zhang     anzi = ai[i+1] - ai[i];
132281d82fe4SHong Zhang     acol = aj + ai[i];
13236973769bSHong Zhang     aval = aa + ai[i];
13241fa1209cSHong Zhang     cnzi = ci[i+1] - ci[i];
13251fa1209cSHong Zhang     ccol = cj + ci[i];
13266973769bSHong Zhang     cval = ca + ci[i];
13271fa1209cSHong Zhang     for (j=0; j<cnzi; j++) {
132881d82fe4SHong Zhang       brow = ccol[j];
132981d82fe4SHong Zhang       bnzj = bi[brow+1] - bi[brow];
133081d82fe4SHong Zhang       bcol = bj + bi[brow];
13316973769bSHong Zhang       bval = ba + bi[brow];
13326973769bSHong Zhang 
133381d82fe4SHong Zhang       /* perform sparse inner-product c(i,j)=A[i,:]*B[j,:]^T */
133481d82fe4SHong Zhang       nexta = 0; nextb = 0;
133581d82fe4SHong Zhang       while (nexta<anzi && nextb<bnzj) {
13367b6d5e96SMark Adams         while (nexta < anzi && acol[nexta] < bcol[nextb]) nexta++;
133781d82fe4SHong Zhang         if (nexta == anzi) break;
13387b6d5e96SMark Adams         while (nextb < bnzj && acol[nexta] > bcol[nextb]) nextb++;
133981d82fe4SHong Zhang         if (nextb == bnzj) break;
134081d82fe4SHong Zhang         if (acol[nexta] == bcol[nextb]) {
13416973769bSHong Zhang           cval[j] += aval[nexta]*bval[nextb];
134281d82fe4SHong Zhang           nexta++; nextb++;
134381d82fe4SHong Zhang           flops += 2;
13441fa1209cSHong Zhang         }
13451fa1209cSHong Zhang       }
134681d82fe4SHong Zhang     }
134781d82fe4SHong Zhang   }
13489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
13499566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
13509566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
13515df89d91SHong Zhang   PetscFunctionReturn(0);
13525df89d91SHong Zhang }
13535df89d91SHong Zhang 
13546718818eSStefano Zampini PetscErrorCode MatDestroy_SeqAIJ_MatTransMatMult(void *data)
13556d373c3eSHong Zhang {
13566718818eSStefano Zampini   Mat_MatTransMatMult *atb = (Mat_MatTransMatMult*)data;
13576d373c3eSHong Zhang 
13586d373c3eSHong Zhang   PetscFunctionBegin;
13599566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&atb->At));
13601baa6e33SBarry Smith   if (atb->destroy) PetscCall((*atb->destroy)(atb->data));
13619566063dSJacob Faibussowitsch   PetscCall(PetscFree(atb));
13626d373c3eSHong Zhang   PetscFunctionReturn(0);
13636d373c3eSHong Zhang }
13646d373c3eSHong Zhang 
13654222ddf1SHong Zhang PetscErrorCode MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat C)
13665df89d91SHong Zhang {
1367089a957eSStefano Zampini   Mat            At = NULL;
13684222ddf1SHong Zhang   Mat_Product    *product = C->product;
1369089a957eSStefano Zampini   PetscBool      flg,def,square;
1370bc011b1eSHong Zhang 
1371bc011b1eSHong Zhang   PetscFunctionBegin;
1372089a957eSStefano Zampini   MatCheckProduct(C,4);
1373b94d7dedSBarry Smith   square = (PetscBool)(A == B && A->symmetric == PETSC_BOOL3_TRUE);
13744222ddf1SHong Zhang   /* outerproduct */
13759566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"outerproduct",&flg));
13764222ddf1SHong Zhang   if (flg) {
1377bc011b1eSHong Zhang     /* create symbolic At */
1378089a957eSStefano Zampini     if (!square) {
1379*7fb60732SBarry Smith       PetscCall(MatTransposeSymbolic(A,&At));
13809566063dSJacob Faibussowitsch       PetscCall(MatSetBlockSizes(At,PetscAbs(A->cmap->bs),PetscAbs(B->cmap->bs)));
13819566063dSJacob Faibussowitsch       PetscCall(MatSetType(At,((PetscObject)A)->type_name));
1382089a957eSStefano Zampini     }
1383bc011b1eSHong Zhang     /* get symbolic C=At*B */
13849566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,"sorted"));
13859566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At,B,fill,C));
1386bc011b1eSHong Zhang 
1387bc011b1eSHong Zhang     /* clean up */
1388089a957eSStefano Zampini     if (!square) {
13899566063dSJacob Faibussowitsch       PetscCall(MatDestroy(&At));
1390089a957eSStefano Zampini     }
13916d373c3eSHong Zhang 
13924222ddf1SHong Zhang     C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ; /* outerproduct */
13939566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,"outerproduct"));
13944222ddf1SHong Zhang     PetscFunctionReturn(0);
13954222ddf1SHong Zhang   }
13964222ddf1SHong Zhang 
13974222ddf1SHong Zhang   /* matmatmult */
13989566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"default",&def));
13999566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"at*b",&flg));
1400089a957eSStefano Zampini   if (flg || def) {
14014222ddf1SHong Zhang     Mat_MatTransMatMult *atb;
14024222ddf1SHong Zhang 
140328b400f6SJacob Faibussowitsch     PetscCheck(!product->data,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Extra product struct not empty");
14049566063dSJacob Faibussowitsch     PetscCall(PetscNew(&atb));
1405089a957eSStefano Zampini     if (!square) {
1406acd337a6SBarry Smith       PetscCall(MatTranspose(A,MAT_INITIAL_MATRIX,&At));
1407089a957eSStefano Zampini     }
14089566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,"sorted"));
14099566063dSJacob Faibussowitsch     PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At,B,fill,C));
14109566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,"at*b"));
14116718818eSStefano Zampini     product->data    = atb;
14126718818eSStefano Zampini     product->destroy = MatDestroy_SeqAIJ_MatTransMatMult;
14134222ddf1SHong Zhang     atb->At          = At;
14144222ddf1SHong Zhang 
14154222ddf1SHong Zhang     C->ops->mattransposemultnumeric = NULL; /* see MatProductNumeric_AtB_SeqAIJ_SeqAIJ */
14164222ddf1SHong Zhang     PetscFunctionReturn(0);
14174222ddf1SHong Zhang   }
14184222ddf1SHong Zhang 
14194222ddf1SHong Zhang   SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Mat Product Algorithm is not supported");
1420bc011b1eSHong Zhang }
1421bc011b1eSHong Zhang 
142275648e8dSHong Zhang PetscErrorCode MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C)
1423bc011b1eSHong Zhang {
14240fbc74f4SHong Zhang   Mat_SeqAIJ     *a=(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c=(Mat_SeqAIJ*)C->data;
1425d0f46423SBarry Smith   PetscInt       am=A->rmap->n,anzi,*ai=a->i,*aj=a->j,*bi=b->i,*bj,bnzi,nextb;
1426d0f46423SBarry Smith   PetscInt       cm=C->rmap->n,*ci=c->i,*cj=c->j,crow,*cjj,i,j,k;
1427d13dce4bSSatish Balay   PetscLogDouble flops=0.0;
1428aa1aec99SHong Zhang   MatScalar      *aa=a->a,*ba,*ca,*caj;
1429bc011b1eSHong Zhang 
1430bc011b1eSHong Zhang   PetscFunctionBegin;
1431aa1aec99SHong Zhang   if (!c->a) {
14329566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(ci[cm]+1,&ca));
14332205254eSKarl Rupp 
1434aa1aec99SHong Zhang     c->a      = ca;
1435aa1aec99SHong Zhang     c->free_a = PETSC_TRUE;
1436aa1aec99SHong Zhang   } else {
1437aa1aec99SHong Zhang     ca   = c->a;
14389566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ca,ci[cm]));
1439aa1aec99SHong Zhang   }
1440bc011b1eSHong Zhang 
1441bc011b1eSHong Zhang   /* compute A^T*B using outer product (A^T)[:,i]*B[i,:] */
1442bc011b1eSHong Zhang   for (i=0; i<am; i++) {
1443bc011b1eSHong Zhang     bj   = b->j + bi[i];
1444bc011b1eSHong Zhang     ba   = b->a + bi[i];
1445bc011b1eSHong Zhang     bnzi = bi[i+1] - bi[i];
1446bc011b1eSHong Zhang     anzi = ai[i+1] - ai[i];
1447bc011b1eSHong Zhang     for (j=0; j<anzi; j++) {
1448bc011b1eSHong Zhang       nextb = 0;
14490fbc74f4SHong Zhang       crow  = *aj++;
1450bc011b1eSHong Zhang       cjj   = cj + ci[crow];
1451bc011b1eSHong Zhang       caj   = ca + ci[crow];
1452bc011b1eSHong Zhang       /* perform sparse axpy operation.  Note cjj includes bj. */
1453bc011b1eSHong Zhang       for (k=0; nextb<bnzi; k++) {
14540fbc74f4SHong Zhang         if (cjj[k] == *(bj+nextb)) { /* ccol == bcol */
14550fbc74f4SHong Zhang           caj[k] += (*aa)*(*(ba+nextb));
1456bc011b1eSHong Zhang           nextb++;
1457bc011b1eSHong Zhang         }
1458bc011b1eSHong Zhang       }
1459bc011b1eSHong Zhang       flops += 2*bnzi;
14600fbc74f4SHong Zhang       aa++;
1461bc011b1eSHong Zhang     }
1462bc011b1eSHong Zhang   }
1463bc011b1eSHong Zhang 
1464bc011b1eSHong Zhang   /* Assemble the final matrix and clean up */
14659566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY));
14669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY));
14679566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(flops));
1468bc011b1eSHong Zhang   PetscFunctionReturn(0);
1469bc011b1eSHong Zhang }
14709123193aSHong Zhang 
14714222ddf1SHong Zhang PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqDense(Mat A,Mat B,PetscReal fill,Mat C)
14729123193aSHong Zhang {
14739123193aSHong Zhang   PetscFunctionBegin;
14749566063dSJacob Faibussowitsch   PetscCall(MatMatMultSymbolic_SeqDense_SeqDense(A,B,0.0,C));
14754222ddf1SHong Zhang   C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqDense;
14769123193aSHong Zhang   PetscFunctionReturn(0);
14779123193aSHong Zhang }
14789123193aSHong Zhang 
147993aa15f2SStefano Zampini PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat A,Mat B,Mat C,const PetscBool add)
14809123193aSHong Zhang {
1481f32d5d43SBarry Smith   Mat_SeqAIJ        *a=(Mat_SeqAIJ*)A->data;
14821ca9667aSStefano Zampini   PetscScalar       *c,r1,r2,r3,r4,*c1,*c2,*c3,*c4;
1483a4af7ca8SStefano Zampini   const PetscScalar *aa,*b,*b1,*b2,*b3,*b4,*av;
1484daf57211SHong Zhang   const PetscInt    *aj;
148575f6d85dSStefano Zampini   PetscInt          cm=C->rmap->n,cn=B->cmap->n,bm,am=A->rmap->n;
148675f6d85dSStefano Zampini   PetscInt          clda;
148775f6d85dSStefano Zampini   PetscInt          am4,bm4,col,i,j,n;
14889123193aSHong Zhang 
14899123193aSHong Zhang   PetscFunctionBegin;
1490f32d5d43SBarry Smith   if (!cm || !cn) PetscFunctionReturn(0);
14919566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJGetArrayRead(A,&av));
149293aa15f2SStefano Zampini   if (add) {
14939566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArray(C,&c));
149493aa15f2SStefano Zampini   } else {
14959566063dSJacob Faibussowitsch     PetscCall(MatDenseGetArrayWrite(C,&c));
149693aa15f2SStefano Zampini   }
14979566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(B,&b));
14989566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(B,&bm));
14999566063dSJacob Faibussowitsch   PetscCall(MatDenseGetLDA(C,&clda));
150075f6d85dSStefano Zampini   am4 = 4*clda;
150175f6d85dSStefano Zampini   bm4 = 4*bm;
1502f32d5d43SBarry Smith   b1 = b; b2 = b1 + bm; b3 = b2 + bm; b4 = b3 + bm;
15031ca9667aSStefano Zampini   c1 = c; c2 = c1 + clda; c3 = c2 + clda; c4 = c3 + clda;
15041ca9667aSStefano Zampini   for (col=0; col<(cn/4)*4; col += 4) {  /* over columns of C */
15051ca9667aSStefano Zampini     for (i=0; i<am; i++) {        /* over rows of A in those columns */
1506f32d5d43SBarry Smith       r1 = r2 = r3 = r4 = 0.0;
1507f32d5d43SBarry Smith       n  = a->i[i+1] - a->i[i];
1508f32d5d43SBarry Smith       aj = a->j + a->i[i];
1509a4af7ca8SStefano Zampini       aa = av + a->i[i];
1510f32d5d43SBarry Smith       for (j=0; j<n; j++) {
15111ca9667aSStefano Zampini         const PetscScalar aatmp = aa[j];
15121ca9667aSStefano Zampini         const PetscInt    ajtmp = aj[j];
1513730858b9SHong Zhang         r1 += aatmp*b1[ajtmp];
1514730858b9SHong Zhang         r2 += aatmp*b2[ajtmp];
1515730858b9SHong Zhang         r3 += aatmp*b3[ajtmp];
1516730858b9SHong Zhang         r4 += aatmp*b4[ajtmp];
15179123193aSHong Zhang       }
151893aa15f2SStefano Zampini       if (add) {
151987753ddeSHong Zhang         c1[i] += r1;
152087753ddeSHong Zhang         c2[i] += r2;
152187753ddeSHong Zhang         c3[i] += r3;
152287753ddeSHong Zhang         c4[i] += r4;
152393aa15f2SStefano Zampini       } else {
152493aa15f2SStefano Zampini         c1[i] = r1;
152593aa15f2SStefano Zampini         c2[i] = r2;
152693aa15f2SStefano Zampini         c3[i] = r3;
152793aa15f2SStefano Zampini         c4[i] = r4;
152893aa15f2SStefano Zampini       }
1529f32d5d43SBarry Smith     }
1530730858b9SHong Zhang     b1 += bm4; b2 += bm4; b3 += bm4; b4 += bm4;
1531730858b9SHong Zhang     c1 += am4; c2 += am4; c3 += am4; c4 += am4;
1532f32d5d43SBarry Smith   }
153393aa15f2SStefano Zampini   /* process remaining columns */
153493aa15f2SStefano Zampini   if (col != cn) {
153593aa15f2SStefano Zampini     PetscInt rc = cn-col;
153693aa15f2SStefano Zampini 
153793aa15f2SStefano Zampini     if (rc == 1) {
153893aa15f2SStefano Zampini       for (i=0; i<am; i++) {
1539f32d5d43SBarry Smith         r1 = 0.0;
1540f32d5d43SBarry Smith         n  = a->i[i+1] - a->i[i];
1541f32d5d43SBarry Smith         aj = a->j + a->i[i];
1542a4af7ca8SStefano Zampini         aa = av + a->i[i];
154393aa15f2SStefano Zampini         for (j=0; j<n; j++) r1 += aa[j]*b1[aj[j]];
154493aa15f2SStefano Zampini         if (add) c1[i] += r1;
154593aa15f2SStefano Zampini         else c1[i] = r1;
154693aa15f2SStefano Zampini       }
154793aa15f2SStefano Zampini     } else if (rc == 2) {
154893aa15f2SStefano Zampini       for (i=0; i<am; i++) {
154993aa15f2SStefano Zampini         r1 = r2 = 0.0;
155093aa15f2SStefano Zampini         n  = a->i[i+1] - a->i[i];
155193aa15f2SStefano Zampini         aj = a->j + a->i[i];
155293aa15f2SStefano Zampini         aa = av + a->i[i];
1553f32d5d43SBarry Smith         for (j=0; j<n; j++) {
155493aa15f2SStefano Zampini           const PetscScalar aatmp = aa[j];
155593aa15f2SStefano Zampini           const PetscInt    ajtmp = aj[j];
155693aa15f2SStefano Zampini           r1 += aatmp*b1[ajtmp];
155793aa15f2SStefano Zampini           r2 += aatmp*b2[ajtmp];
1558f32d5d43SBarry Smith         }
155993aa15f2SStefano Zampini         if (add) {
156087753ddeSHong Zhang           c1[i] += r1;
156193aa15f2SStefano Zampini           c2[i] += r2;
156293aa15f2SStefano Zampini         } else {
156393aa15f2SStefano Zampini           c1[i] = r1;
156493aa15f2SStefano Zampini           c2[i] = r2;
1565f32d5d43SBarry Smith         }
156693aa15f2SStefano Zampini       }
156793aa15f2SStefano Zampini     } else {
156893aa15f2SStefano Zampini       for (i=0; i<am; i++) {
156993aa15f2SStefano Zampini         r1 = r2 = r3 = 0.0;
157093aa15f2SStefano Zampini         n  = a->i[i+1] - a->i[i];
157193aa15f2SStefano Zampini         aj = a->j + a->i[i];
157293aa15f2SStefano Zampini         aa = av + a->i[i];
157393aa15f2SStefano Zampini         for (j=0; j<n; j++) {
157493aa15f2SStefano Zampini           const PetscScalar aatmp = aa[j];
157593aa15f2SStefano Zampini           const PetscInt    ajtmp = aj[j];
157693aa15f2SStefano Zampini           r1 += aatmp*b1[ajtmp];
157793aa15f2SStefano Zampini           r2 += aatmp*b2[ajtmp];
157893aa15f2SStefano Zampini           r3 += aatmp*b3[ajtmp];
157993aa15f2SStefano Zampini         }
158093aa15f2SStefano Zampini         if (add) {
158193aa15f2SStefano Zampini           c1[i] += r1;
158293aa15f2SStefano Zampini           c2[i] += r2;
158393aa15f2SStefano Zampini           c3[i] += r3;
158493aa15f2SStefano Zampini         } else {
158593aa15f2SStefano Zampini           c1[i] = r1;
158693aa15f2SStefano Zampini           c2[i] = r2;
158793aa15f2SStefano Zampini           c3[i] = r3;
158893aa15f2SStefano Zampini         }
158993aa15f2SStefano Zampini       }
159093aa15f2SStefano Zampini     }
1591f32d5d43SBarry Smith   }
15929566063dSJacob Faibussowitsch   PetscCall(PetscLogFlops(cn*(2.0*a->nz)));
159393aa15f2SStefano Zampini   if (add) {
15949566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArray(C,&c));
159593aa15f2SStefano Zampini   } else {
15969566063dSJacob Faibussowitsch     PetscCall(MatDenseRestoreArrayWrite(C,&c));
159793aa15f2SStefano Zampini   }
15989566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(B,&b));
15999566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJRestoreArrayRead(A,&av));
1600f32d5d43SBarry Smith   PetscFunctionReturn(0);
1601f32d5d43SBarry Smith }
1602f32d5d43SBarry Smith 
160387753ddeSHong Zhang PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqDense(Mat A,Mat B,Mat C)
1604f32d5d43SBarry Smith {
1605f32d5d43SBarry Smith   PetscFunctionBegin;
160608401ef6SPierre Jolivet   PetscCheck(B->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number columns in A %" PetscInt_FMT " not equal rows in B %" PetscInt_FMT,A->cmap->n,B->rmap->n);
160708401ef6SPierre Jolivet   PetscCheck(A->rmap->n == C->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number rows in C %" PetscInt_FMT " not equal rows in A %" PetscInt_FMT,C->rmap->n,A->rmap->n);
160808401ef6SPierre Jolivet   PetscCheck(B->cmap->n == C->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Number columns in B %" PetscInt_FMT " not equal columns in C %" PetscInt_FMT,B->cmap->n,C->cmap->n);
16094324174eSBarry Smith 
16109566063dSJacob Faibussowitsch   PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(A,B,C,PETSC_FALSE));
16119123193aSHong Zhang   PetscFunctionReturn(0);
16129123193aSHong Zhang }
1613b1683b59SHong Zhang 
16144222ddf1SHong Zhang /* ------------------------------------------------------- */
16154222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AB(Mat C)
16164222ddf1SHong Zhang {
16174222ddf1SHong Zhang   PetscFunctionBegin;
16184222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqDense;
16194222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
16204222ddf1SHong Zhang   PetscFunctionReturn(0);
16214222ddf1SHong Zhang }
16224222ddf1SHong Zhang 
16236718818eSStefano Zampini PETSC_INTERN PetscErrorCode MatTMatTMultSymbolic_SeqAIJ_SeqDense(Mat,Mat,PetscReal,Mat);
16246718818eSStefano Zampini 
16254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(Mat C)
16264222ddf1SHong Zhang {
16274222ddf1SHong Zhang   PetscFunctionBegin;
16286718818eSStefano Zampini   C->ops->transposematmultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense;
16294222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_AtB;
16306718818eSStefano Zampini   PetscFunctionReturn(0);
16316718818eSStefano Zampini }
16326718818eSStefano Zampini 
16336718818eSStefano Zampini static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(Mat C)
16346718818eSStefano Zampini {
16356718818eSStefano Zampini   PetscFunctionBegin;
16366718818eSStefano Zampini   C->ops->mattransposemultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense;
16376718818eSStefano Zampini   C->ops->productsymbolic          = MatProductSymbolic_ABt;
16384222ddf1SHong Zhang   PetscFunctionReturn(0);
16394222ddf1SHong Zhang }
16404222ddf1SHong Zhang 
16414222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense(Mat C)
16424222ddf1SHong Zhang {
16434222ddf1SHong Zhang   Mat_Product    *product = C->product;
16444222ddf1SHong Zhang 
16454222ddf1SHong Zhang   PetscFunctionBegin;
16464222ddf1SHong Zhang   switch (product->type) {
16474222ddf1SHong Zhang   case MATPRODUCT_AB:
16489566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AB(C));
16494222ddf1SHong Zhang     break;
16504222ddf1SHong Zhang   case MATPRODUCT_AtB:
16519566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(C));
16524222ddf1SHong Zhang     break;
16536718818eSStefano Zampini   case MATPRODUCT_ABt:
16549566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(C));
16554222ddf1SHong Zhang     break;
16564222ddf1SHong Zhang   default:
16576718818eSStefano Zampini     break;
16584222ddf1SHong Zhang   }
16594222ddf1SHong Zhang   PetscFunctionReturn(0);
16604222ddf1SHong Zhang }
16614222ddf1SHong Zhang /* ------------------------------------------------------- */
16624222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(Mat C)
16634222ddf1SHong Zhang {
16644222ddf1SHong Zhang   Mat_Product    *product = C->product;
16654222ddf1SHong Zhang   Mat            A = product->A;
16664222ddf1SHong Zhang   PetscBool      baij;
16674222ddf1SHong Zhang 
16684222ddf1SHong Zhang   PetscFunctionBegin;
16699566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQBAIJ,&baij));
16704222ddf1SHong Zhang   if (!baij) { /* A is seqsbaij */
16714222ddf1SHong Zhang     PetscBool sbaij;
16729566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)A,MATSEQSBAIJ,&sbaij));
167328b400f6SJacob Faibussowitsch     PetscCheck(sbaij,PetscObjectComm((PetscObject)C),PETSC_ERR_ARG_WRONGSTATE,"Mat must be either seqbaij or seqsbaij format");
16744222ddf1SHong Zhang 
16754222ddf1SHong Zhang     C->ops->matmultsymbolic = MatMatMultSymbolic_SeqSBAIJ_SeqDense;
16764222ddf1SHong Zhang   } else { /* A is seqbaij */
16774222ddf1SHong Zhang     C->ops->matmultsymbolic = MatMatMultSymbolic_SeqBAIJ_SeqDense;
16784222ddf1SHong Zhang   }
16794222ddf1SHong Zhang 
16804222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
16814222ddf1SHong Zhang   PetscFunctionReturn(0);
16824222ddf1SHong Zhang }
16834222ddf1SHong Zhang 
16844222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense(Mat C)
16854222ddf1SHong Zhang {
16864222ddf1SHong Zhang   Mat_Product    *product = C->product;
16874222ddf1SHong Zhang 
16884222ddf1SHong Zhang   PetscFunctionBegin;
16896718818eSStefano Zampini   MatCheckProduct(C,1);
169028b400f6SJacob Faibussowitsch   PetscCheck(product->A,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing A");
1691b94d7dedSBarry Smith   if (product->type == MATPRODUCT_AB || (product->type == MATPRODUCT_AtB && product->A->symmetric == PETSC_BOOL3_TRUE)) PetscCall(MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(C));
16924222ddf1SHong Zhang   PetscFunctionReturn(0);
16934222ddf1SHong Zhang }
16946718818eSStefano Zampini 
16954222ddf1SHong Zhang /* ------------------------------------------------------- */
16964222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ_AB(Mat C)
16974222ddf1SHong Zhang {
16984222ddf1SHong Zhang   PetscFunctionBegin;
16994222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqAIJ;
17004222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
17014222ddf1SHong Zhang   PetscFunctionReturn(0);
17024222ddf1SHong Zhang }
17034222ddf1SHong Zhang 
17044222ddf1SHong Zhang PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ(Mat C)
17054222ddf1SHong Zhang {
17064222ddf1SHong Zhang   Mat_Product    *product = C->product;
17074222ddf1SHong Zhang 
17084222ddf1SHong Zhang   PetscFunctionBegin;
17094222ddf1SHong Zhang   if (product->type == MATPRODUCT_AB) {
17109566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqDense_SeqAIJ_AB(C));
17116718818eSStefano Zampini   }
17124222ddf1SHong Zhang   PetscFunctionReturn(0);
17134222ddf1SHong Zhang }
17144222ddf1SHong Zhang /* ------------------------------------------------------- */
17154222ddf1SHong Zhang 
1716b9af6bddSHong Zhang PetscErrorCode  MatTransColoringApplySpToDen_SeqAIJ(MatTransposeColoring coloring,Mat B,Mat Btdense)
1717c8db22f6SHong Zhang {
17182f5f1f90SHong Zhang   Mat_SeqAIJ     *b       = (Mat_SeqAIJ*)B->data;
17192f5f1f90SHong Zhang   Mat_SeqDense   *btdense = (Mat_SeqDense*)Btdense->data;
17202f5f1f90SHong Zhang   PetscInt       *bi      = b->i,*bj=b->j;
17212f5f1f90SHong Zhang   PetscInt       m        = Btdense->rmap->n,n=Btdense->cmap->n,j,k,l,col,anz,*btcol,brow,ncolumns;
17222f5f1f90SHong Zhang   MatScalar      *btval,*btval_den,*ba=b->a;
17232f5f1f90SHong Zhang   PetscInt       *columns=coloring->columns,*colorforcol=coloring->colorforcol,ncolors=coloring->ncolors;
1724c8db22f6SHong Zhang 
1725c8db22f6SHong Zhang   PetscFunctionBegin;
17262f5f1f90SHong Zhang   btval_den=btdense->v;
17279566063dSJacob Faibussowitsch   PetscCall(PetscArrayzero(btval_den,m*n));
17282f5f1f90SHong Zhang   for (k=0; k<ncolors; k++) {
17292f5f1f90SHong Zhang     ncolumns = coloring->ncolumns[k];
17302f5f1f90SHong Zhang     for (l=0; l<ncolumns; l++) { /* insert a row of B to a column of Btdense */
1731d2853540SHong Zhang       col   = *(columns + colorforcol[k] + l);
17322f5f1f90SHong Zhang       btcol = bj + bi[col];
17332f5f1f90SHong Zhang       btval = ba + bi[col];
17342f5f1f90SHong Zhang       anz   = bi[col+1] - bi[col];
1735d2853540SHong Zhang       for (j=0; j<anz; j++) {
17362f5f1f90SHong Zhang         brow            = btcol[j];
17372f5f1f90SHong Zhang         btval_den[brow] = btval[j];
1738c8db22f6SHong Zhang       }
1739c8db22f6SHong Zhang     }
17402f5f1f90SHong Zhang     btval_den += m;
1741c8db22f6SHong Zhang   }
1742c8db22f6SHong Zhang   PetscFunctionReturn(0);
1743c8db22f6SHong Zhang }
1744c8db22f6SHong Zhang 
1745b9af6bddSHong Zhang PetscErrorCode MatTransColoringApplyDenToSp_SeqAIJ(MatTransposeColoring matcoloring,Mat Cden,Mat Csp)
17468972f759SHong Zhang {
1747b2d2b04fSHong Zhang   Mat_SeqAIJ        *csp = (Mat_SeqAIJ*)Csp->data;
17481683a169SBarry Smith   const PetscScalar *ca_den,*ca_den_ptr;
17491683a169SBarry Smith   PetscScalar       *ca=csp->a;
1750f99a636bSHong Zhang   PetscInt          k,l,m=Cden->rmap->n,ncolors=matcoloring->ncolors;
1751e88777f2SHong Zhang   PetscInt          brows=matcoloring->brows,*den2sp=matcoloring->den2sp;
1752077f23c2SHong Zhang   PetscInt          nrows,*row,*idx;
1753077f23c2SHong Zhang   PetscInt          *rows=matcoloring->rows,*colorforrow=matcoloring->colorforrow;
17548972f759SHong Zhang 
17558972f759SHong Zhang   PetscFunctionBegin;
17569566063dSJacob Faibussowitsch   PetscCall(MatDenseGetArrayRead(Cden,&ca_den));
1757f99a636bSHong Zhang 
1758077f23c2SHong Zhang   if (brows > 0) {
1759077f23c2SHong Zhang     PetscInt *lstart,row_end,row_start;
1760980ae229SHong Zhang     lstart = matcoloring->lstart;
17619566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(lstart,ncolors));
1762eeb4fd02SHong Zhang 
1763077f23c2SHong Zhang     row_end = brows;
1764eeb4fd02SHong Zhang     if (row_end > m) row_end = m;
1765077f23c2SHong Zhang     for (row_start=0; row_start<m; row_start+=brows) { /* loop over row blocks of Csp */
1766077f23c2SHong Zhang       ca_den_ptr = ca_den;
1767980ae229SHong Zhang       for (k=0; k<ncolors; k++) { /* loop over colors (columns of Cden) */
1768eeb4fd02SHong Zhang         nrows = matcoloring->nrows[k];
1769eeb4fd02SHong Zhang         row   = rows  + colorforrow[k];
1770eeb4fd02SHong Zhang         idx   = den2sp + colorforrow[k];
1771eeb4fd02SHong Zhang         for (l=lstart[k]; l<nrows; l++) {
1772eeb4fd02SHong Zhang           if (row[l] >= row_end) {
1773eeb4fd02SHong Zhang             lstart[k] = l;
1774eeb4fd02SHong Zhang             break;
1775eeb4fd02SHong Zhang           } else {
1776077f23c2SHong Zhang             ca[idx[l]] = ca_den_ptr[row[l]];
1777eeb4fd02SHong Zhang           }
1778eeb4fd02SHong Zhang         }
1779077f23c2SHong Zhang         ca_den_ptr += m;
1780eeb4fd02SHong Zhang       }
1781077f23c2SHong Zhang       row_end += brows;
1782eeb4fd02SHong Zhang       if (row_end > m) row_end = m;
1783eeb4fd02SHong Zhang     }
1784077f23c2SHong Zhang   } else { /* non-blocked impl: loop over columns of Csp - slow if Csp is large */
1785077f23c2SHong Zhang     ca_den_ptr = ca_den;
1786077f23c2SHong Zhang     for (k=0; k<ncolors; k++) {
1787077f23c2SHong Zhang       nrows = matcoloring->nrows[k];
1788077f23c2SHong Zhang       row   = rows  + colorforrow[k];
1789077f23c2SHong Zhang       idx   = den2sp + colorforrow[k];
1790077f23c2SHong Zhang       for (l=0; l<nrows; l++) {
1791077f23c2SHong Zhang         ca[idx[l]] = ca_den_ptr[row[l]];
1792077f23c2SHong Zhang       }
1793077f23c2SHong Zhang       ca_den_ptr += m;
1794077f23c2SHong Zhang     }
1795f99a636bSHong Zhang   }
1796f99a636bSHong Zhang 
17979566063dSJacob Faibussowitsch   PetscCall(MatDenseRestoreArrayRead(Cden,&ca_den));
1798f99a636bSHong Zhang #if defined(PETSC_USE_INFO)
1799077f23c2SHong Zhang   if (matcoloring->brows > 0) {
18009566063dSJacob Faibussowitsch     PetscCall(PetscInfo(Csp,"Loop over %" PetscInt_FMT " row blocks for den2sp\n",brows));
1801e88777f2SHong Zhang   } else {
18029566063dSJacob Faibussowitsch     PetscCall(PetscInfo(Csp,"Loop over colors/columns of Cden, inefficient for large sparse matrix product \n"));
1803e88777f2SHong Zhang   }
1804f99a636bSHong Zhang #endif
18058972f759SHong Zhang   PetscFunctionReturn(0);
18068972f759SHong Zhang }
18078972f759SHong Zhang 
1808b9af6bddSHong Zhang PetscErrorCode MatTransposeColoringCreate_SeqAIJ(Mat mat,ISColoring iscoloring,MatTransposeColoring c)
1809b1683b59SHong Zhang {
1810e88777f2SHong Zhang   PetscInt       i,n,nrows,Nbs,j,k,m,ncols,col,cm;
18111a83f524SJed Brown   const PetscInt *is,*ci,*cj,*row_idx;
1812b28d80bdSHong Zhang   PetscInt       nis = iscoloring->n,*rowhit,bs = 1;
1813b1683b59SHong Zhang   IS             *isa;
1814b28d80bdSHong Zhang   Mat_SeqAIJ     *csp = (Mat_SeqAIJ*)mat->data;
1815e88777f2SHong Zhang   PetscInt       *colorforrow,*rows,*rows_i,*idxhit,*spidx,*den2sp,*den2sp_i;
1816e88777f2SHong Zhang   PetscInt       *colorforcol,*columns,*columns_i,brows;
1817e88777f2SHong Zhang   PetscBool      flg;
1818b1683b59SHong Zhang 
1819b1683b59SHong Zhang   PetscFunctionBegin;
18209566063dSJacob Faibussowitsch   PetscCall(ISColoringGetIS(iscoloring,PETSC_USE_POINTER,PETSC_IGNORE,&isa));
1821e99be685SHong Zhang 
18227ecccc15SHong Zhang   /* bs >1 is not being tested yet! */
1823e88777f2SHong Zhang   Nbs       = mat->cmap->N/bs;
1824b1683b59SHong Zhang   c->M      = mat->rmap->N/bs;  /* set total rows, columns and local rows */
1825e88777f2SHong Zhang   c->N      = Nbs;
1826e88777f2SHong Zhang   c->m      = c->M;
1827b1683b59SHong Zhang   c->rstart = 0;
1828e88777f2SHong Zhang   c->brows  = 100;
1829b1683b59SHong Zhang 
1830b1683b59SHong Zhang   c->ncolors = nis;
18319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(nis,&c->ncolumns,nis,&c->nrows,nis+1,&colorforrow));
18329566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(csp->nz+1,&rows));
18339566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(csp->nz+1,&den2sp));
1834e88777f2SHong Zhang 
1835e88777f2SHong Zhang   brows = c->brows;
18369566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetInt(NULL,NULL,"-matden2sp_brows",&brows,&flg));
1837e88777f2SHong Zhang   if (flg) c->brows = brows;
1838eeb4fd02SHong Zhang   if (brows > 0) {
18399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nis+1,&c->lstart));
1840e88777f2SHong Zhang   }
18412205254eSKarl Rupp 
1842d2853540SHong Zhang   colorforrow[0] = 0;
1843d2853540SHong Zhang   rows_i         = rows;
1844f99a636bSHong Zhang   den2sp_i       = den2sp;
1845b1683b59SHong Zhang 
18469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nis+1,&colorforcol));
18479566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(Nbs+1,&columns));
18482205254eSKarl Rupp 
1849d2853540SHong Zhang   colorforcol[0] = 0;
1850d2853540SHong Zhang   columns_i      = columns;
1851d2853540SHong Zhang 
1852077f23c2SHong Zhang   /* get column-wise storage of mat */
18539566063dSJacob Faibussowitsch   PetscCall(MatGetColumnIJ_SeqAIJ_Color(mat,0,PETSC_FALSE,PETSC_FALSE,&ncols,&ci,&cj,&spidx,NULL));
1854b1683b59SHong Zhang 
1855b28d80bdSHong Zhang   cm   = c->m;
18569566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cm+1,&rowhit));
18579566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(cm+1,&idxhit));
1858f99a636bSHong Zhang   for (i=0; i<nis; i++) { /* loop over color */
18599566063dSJacob Faibussowitsch     PetscCall(ISGetLocalSize(isa[i],&n));
18609566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(isa[i],&is));
18612205254eSKarl Rupp 
1862b1683b59SHong Zhang     c->ncolumns[i] = n;
18631baa6e33SBarry Smith     if (n) PetscCall(PetscArraycpy(columns_i,is,n));
1864d2853540SHong Zhang     colorforcol[i+1] = colorforcol[i] + n;
1865d2853540SHong Zhang     columns_i       += n;
1866b1683b59SHong Zhang 
1867b1683b59SHong Zhang     /* fast, crude version requires O(N*N) work */
18689566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(rowhit,cm));
1869e99be685SHong Zhang 
1870b7caf3d6SHong Zhang     for (j=0; j<n; j++) { /* loop over columns*/
1871b1683b59SHong Zhang       col     = is[j];
1872d2853540SHong Zhang       row_idx = cj + ci[col];
1873b1683b59SHong Zhang       m       = ci[col+1] - ci[col];
1874b7caf3d6SHong Zhang       for (k=0; k<m; k++) { /* loop over columns marking them in rowhit */
1875e99be685SHong Zhang         idxhit[*row_idx]   = spidx[ci[col] + k];
1876d2853540SHong Zhang         rowhit[*row_idx++] = col + 1;
1877b1683b59SHong Zhang       }
1878b1683b59SHong Zhang     }
1879b1683b59SHong Zhang     /* count the number of hits */
1880b1683b59SHong Zhang     nrows = 0;
1881e8354b3eSHong Zhang     for (j=0; j<cm; j++) {
1882b1683b59SHong Zhang       if (rowhit[j]) nrows++;
1883b1683b59SHong Zhang     }
1884b1683b59SHong Zhang     c->nrows[i]      = nrows;
1885d2853540SHong Zhang     colorforrow[i+1] = colorforrow[i] + nrows;
1886d2853540SHong Zhang 
1887b1683b59SHong Zhang     nrows = 0;
1888b7caf3d6SHong Zhang     for (j=0; j<cm; j++) { /* loop over rows */
1889b1683b59SHong Zhang       if (rowhit[j]) {
1890d2853540SHong Zhang         rows_i[nrows]   = j;
189112b89a43SHong Zhang         den2sp_i[nrows] = idxhit[j];
1892b1683b59SHong Zhang         nrows++;
1893b1683b59SHong Zhang       }
1894b1683b59SHong Zhang     }
1895e88777f2SHong Zhang     den2sp_i += nrows;
1896077f23c2SHong Zhang 
18979566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(isa[i],&is));
1898f99a636bSHong Zhang     rows_i += nrows;
1899b1683b59SHong Zhang   }
19009566063dSJacob Faibussowitsch   PetscCall(MatRestoreColumnIJ_SeqAIJ_Color(mat,0,PETSC_FALSE,PETSC_FALSE,&ncols,&ci,&cj,&spidx,NULL));
19019566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowhit));
19029566063dSJacob Faibussowitsch   PetscCall(ISColoringRestoreIS(iscoloring,PETSC_USE_POINTER,&isa));
19032c71b3e2SJacob Faibussowitsch   PetscCheck(csp->nz == colorforrow[nis],PETSC_COMM_SELF,PETSC_ERR_PLIB,"csp->nz %" PetscInt_FMT " != colorforrow[nis] %" PetscInt_FMT,csp->nz,colorforrow[nis]);
1904b28d80bdSHong Zhang 
1905d2853540SHong Zhang   c->colorforrow = colorforrow;
1906d2853540SHong Zhang   c->rows        = rows;
1907f99a636bSHong Zhang   c->den2sp      = den2sp;
1908d2853540SHong Zhang   c->colorforcol = colorforcol;
1909d2853540SHong Zhang   c->columns     = columns;
19102205254eSKarl Rupp 
19119566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxhit));
1912b1683b59SHong Zhang   PetscFunctionReturn(0);
1913b1683b59SHong Zhang }
1914d013fc79Sandi selinger 
19154222ddf1SHong Zhang /* --------------------------------------------------------------- */
19164222ddf1SHong Zhang static PetscErrorCode MatProductNumeric_AtB_SeqAIJ_SeqAIJ(Mat C)
1917df97dc6dSFande Kong {
19184222ddf1SHong Zhang   Mat_Product    *product = C->product;
19194222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
19204222ddf1SHong Zhang 
1921df97dc6dSFande Kong   PetscFunctionBegin;
19224222ddf1SHong Zhang   if (C->ops->mattransposemultnumeric) {
19234222ddf1SHong Zhang     /* Alg: "outerproduct" */
19249566063dSJacob Faibussowitsch     PetscCall((*C->ops->mattransposemultnumeric)(A,B,C));
19254222ddf1SHong Zhang   } else {
19264222ddf1SHong Zhang     /* Alg: "matmatmult" -- C = At*B */
19276718818eSStefano Zampini     Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)product->data;
19284222ddf1SHong Zhang 
192928b400f6SJacob Faibussowitsch     PetscCheck(atb,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Missing product struct");
1930*7fb60732SBarry Smith     if (atb->At) { /* At is computed in MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ() */
1931*7fb60732SBarry Smith       PetscCall(MatTranspose(A,MAT_REUSE_MATRIX,&atb->At));
19324222ddf1SHong Zhang     }
1933*7fb60732SBarry Smith     PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ(atb->At ? atb->At : A,B,C));
19344222ddf1SHong Zhang   }
1935df97dc6dSFande Kong   PetscFunctionReturn(0);
1936df97dc6dSFande Kong }
1937df97dc6dSFande Kong 
19384222ddf1SHong Zhang static PetscErrorCode MatProductSymbolic_AtB_SeqAIJ_SeqAIJ(Mat C)
1939d013fc79Sandi selinger {
19404222ddf1SHong Zhang   Mat_Product    *product = C->product;
19414222ddf1SHong Zhang   Mat            A=product->A,B=product->B;
19424222ddf1SHong Zhang   PetscReal      fill=product->fill;
1943d013fc79Sandi selinger 
1944d013fc79Sandi selinger   PetscFunctionBegin;
19459566063dSJacob Faibussowitsch   PetscCall(MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(A,B,fill,C));
19462869b61bSandi selinger 
19474222ddf1SHong Zhang   C->ops->productnumeric = MatProductNumeric_AtB_SeqAIJ_SeqAIJ;
19484222ddf1SHong Zhang   PetscFunctionReturn(0);
19492869b61bSandi selinger }
1950d013fc79Sandi selinger 
19514222ddf1SHong Zhang /* --------------------------------------------------------------- */
19524222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AB(Mat C)
19534222ddf1SHong Zhang {
19544222ddf1SHong Zhang   Mat_Product    *product = C->product;
19554222ddf1SHong Zhang   PetscInt       alg = 0; /* default algorithm */
19564222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
19574222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
19584222ddf1SHong Zhang   const char     *algTypes[7] = {"sorted","scalable","scalable_fast","heap","btheap","llcondensed","rowmerge"};
19594222ddf1SHong Zhang   PetscInt       nalg = 7;
19604222ddf1SHong Zhang #else
19614222ddf1SHong Zhang   const char     *algTypes[8] = {"sorted","scalable","scalable_fast","heap","btheap","llcondensed","rowmerge","hypre"};
19624222ddf1SHong Zhang   PetscInt       nalg = 8;
19634222ddf1SHong Zhang #endif
19644222ddf1SHong Zhang 
19654222ddf1SHong Zhang   PetscFunctionBegin;
19664222ddf1SHong Zhang   /* Set default algorithm */
19679566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
19684222ddf1SHong Zhang   if (flg) {
19699566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
1970d013fc79Sandi selinger   }
1971d013fc79Sandi selinger 
19724222ddf1SHong Zhang   /* Get runtime option */
19734222ddf1SHong Zhang   if (product->api_user) {
1974d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMult","Mat");
19759566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmult_via","Algorithmic approach","MatMatMult",algTypes,nalg,algTypes[0],&alg,&flg));
1976d0609cedSBarry Smith     PetscOptionsEnd();
19774222ddf1SHong Zhang   } else {
1978d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AB","Mat");
19799566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_AB",algTypes,nalg,algTypes[0],&alg,&flg));
1980d0609cedSBarry Smith     PetscOptionsEnd();
1981d013fc79Sandi selinger   }
19824222ddf1SHong Zhang   if (flg) {
19839566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
1984d013fc79Sandi selinger   }
1985d013fc79Sandi selinger 
19864222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AB;
19874222ddf1SHong Zhang   C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqAIJ;
19884222ddf1SHong Zhang   PetscFunctionReturn(0);
19894222ddf1SHong Zhang }
1990d013fc79Sandi selinger 
19914222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AtB(Mat C)
19924222ddf1SHong Zhang {
19934222ddf1SHong Zhang   Mat_Product    *product = C->product;
19944222ddf1SHong Zhang   PetscInt       alg = 0; /* default algorithm */
19954222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
1996089a957eSStefano Zampini   const char     *algTypes[3] = {"default","at*b","outerproduct"};
1997089a957eSStefano Zampini   PetscInt       nalg = 3;
1998d013fc79Sandi selinger 
19994222ddf1SHong Zhang   PetscFunctionBegin;
20004222ddf1SHong Zhang   /* Get runtime option */
20014222ddf1SHong Zhang   if (product->api_user) {
2002d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatTransposeMatMult","Mat");
20039566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mattransposematmult_via","Algorithmic approach","MatTransposeMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2004d0609cedSBarry Smith     PetscOptionsEnd();
20054222ddf1SHong Zhang   } else {
2006d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_AtB","Mat");
20079566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_AtB",algTypes,nalg,algTypes[alg],&alg,&flg));
2008d0609cedSBarry Smith     PetscOptionsEnd();
20094222ddf1SHong Zhang   }
20104222ddf1SHong Zhang   if (flg) {
20119566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
20124222ddf1SHong Zhang   }
2013d013fc79Sandi selinger 
20144222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_AtB_SeqAIJ_SeqAIJ;
20154222ddf1SHong Zhang   PetscFunctionReturn(0);
20164222ddf1SHong Zhang }
20174222ddf1SHong Zhang 
20184222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABt(Mat C)
20194222ddf1SHong Zhang {
20204222ddf1SHong Zhang   Mat_Product    *product = C->product;
20214222ddf1SHong Zhang   PetscInt       alg = 0; /* default algorithm */
20224222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
20234222ddf1SHong Zhang   const char     *algTypes[2] = {"default","color"};
20244222ddf1SHong Zhang   PetscInt       nalg = 2;
20254222ddf1SHong Zhang 
20264222ddf1SHong Zhang   PetscFunctionBegin;
20274222ddf1SHong Zhang   /* Set default algorithm */
20289566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(C->product->alg,"default",&flg));
20294222ddf1SHong Zhang   if (!flg) {
20304222ddf1SHong Zhang     alg = 1;
20319566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
20324222ddf1SHong Zhang   }
20334222ddf1SHong Zhang 
20344222ddf1SHong Zhang   /* Get runtime option */
20354222ddf1SHong Zhang   if (product->api_user) {
2036d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatTransposeMult","Mat");
20379566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmattransmult_via","Algorithmic approach","MatMatTransposeMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2038d0609cedSBarry Smith     PetscOptionsEnd();
20394222ddf1SHong Zhang   } else {
2040d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABt","Mat");
20419566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABt",algTypes,nalg,algTypes[alg],&alg,&flg));
2042d0609cedSBarry Smith     PetscOptionsEnd();
20434222ddf1SHong Zhang   }
20444222ddf1SHong Zhang   if (flg) {
20459566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
20464222ddf1SHong Zhang   }
20474222ddf1SHong Zhang 
20484222ddf1SHong Zhang   C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ;
20494222ddf1SHong Zhang   C->ops->productsymbolic          = MatProductSymbolic_ABt;
20504222ddf1SHong Zhang   PetscFunctionReturn(0);
20514222ddf1SHong Zhang }
20524222ddf1SHong Zhang 
20534222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_PtAP(Mat C)
20544222ddf1SHong Zhang {
20554222ddf1SHong Zhang   Mat_Product    *product = C->product;
20564222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
20574222ddf1SHong Zhang   PetscInt       alg = 0; /* default algorithm -- alg=1 should be default!!! */
20584222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE)
20594222ddf1SHong Zhang   const char     *algTypes[2] = {"scalable","rap"};
20604222ddf1SHong Zhang   PetscInt       nalg = 2;
20614222ddf1SHong Zhang #else
20624222ddf1SHong Zhang   const char     *algTypes[3] = {"scalable","rap","hypre"};
20634222ddf1SHong Zhang   PetscInt       nalg = 3;
20644222ddf1SHong Zhang #endif
20654222ddf1SHong Zhang 
20664222ddf1SHong Zhang   PetscFunctionBegin;
20674222ddf1SHong Zhang   /* Set default algorithm */
20689566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"default",&flg));
20694222ddf1SHong Zhang   if (flg) {
20709566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
20714222ddf1SHong Zhang   }
20724222ddf1SHong Zhang 
20734222ddf1SHong Zhang   /* Get runtime option */
20744222ddf1SHong Zhang   if (product->api_user) {
2075d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatPtAP","Mat");
20769566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matptap_via","Algorithmic approach","MatPtAP",algTypes,nalg,algTypes[0],&alg,&flg));
2077d0609cedSBarry Smith     PetscOptionsEnd();
20784222ddf1SHong Zhang   } else {
2079d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_PtAP","Mat");
20809566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_PtAP",algTypes,nalg,algTypes[0],&alg,&flg));
2081d0609cedSBarry Smith     PetscOptionsEnd();
20824222ddf1SHong Zhang   }
20834222ddf1SHong Zhang   if (flg) {
20849566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
20854222ddf1SHong Zhang   }
20864222ddf1SHong Zhang 
20874222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_PtAP_SeqAIJ_SeqAIJ;
20884222ddf1SHong Zhang   PetscFunctionReturn(0);
20894222ddf1SHong Zhang }
20904222ddf1SHong Zhang 
20914222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_RARt(Mat C)
20924222ddf1SHong Zhang {
20934222ddf1SHong Zhang   Mat_Product    *product = C->product;
20944222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
20954222ddf1SHong Zhang   PetscInt       alg = 0; /* default algorithm */
20964222ddf1SHong Zhang   const char     *algTypes[3] = {"r*a*rt","r*art","coloring_rart"};
20974222ddf1SHong Zhang   PetscInt        nalg = 3;
20984222ddf1SHong Zhang 
20994222ddf1SHong Zhang   PetscFunctionBegin;
21004222ddf1SHong Zhang   /* Set default algorithm */
21019566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"default",&flg));
21024222ddf1SHong Zhang   if (flg) {
21039566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21044222ddf1SHong Zhang   }
21054222ddf1SHong Zhang 
21064222ddf1SHong Zhang   /* Get runtime option */
21074222ddf1SHong Zhang   if (product->api_user) {
2108d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatRARt","Mat");
21099566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matrart_via","Algorithmic approach","MatRARt",algTypes,nalg,algTypes[0],&alg,&flg));
2110d0609cedSBarry Smith     PetscOptionsEnd();
21114222ddf1SHong Zhang   } else {
2112d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_RARt","Mat");
21139566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_RARt",algTypes,nalg,algTypes[0],&alg,&flg));
2114d0609cedSBarry Smith     PetscOptionsEnd();
21154222ddf1SHong Zhang   }
21164222ddf1SHong Zhang   if (flg) {
21179566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21184222ddf1SHong Zhang   }
21194222ddf1SHong Zhang 
21204222ddf1SHong Zhang   C->ops->productsymbolic = MatProductSymbolic_RARt_SeqAIJ_SeqAIJ;
21214222ddf1SHong Zhang   PetscFunctionReturn(0);
21224222ddf1SHong Zhang }
21234222ddf1SHong Zhang 
21244222ddf1SHong Zhang /* ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm */
21254222ddf1SHong Zhang static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABC(Mat C)
21264222ddf1SHong Zhang {
21274222ddf1SHong Zhang   Mat_Product    *product = C->product;
21284222ddf1SHong Zhang   PetscInt       alg = 0; /* default algorithm */
21294222ddf1SHong Zhang   PetscBool      flg = PETSC_FALSE;
21304222ddf1SHong Zhang   const char     *algTypes[7] = {"sorted","scalable","scalable_fast","heap","btheap","llcondensed","rowmerge"};
21314222ddf1SHong Zhang   PetscInt       nalg = 7;
21324222ddf1SHong Zhang 
21334222ddf1SHong Zhang   PetscFunctionBegin;
21344222ddf1SHong Zhang   /* Set default algorithm */
21359566063dSJacob Faibussowitsch   PetscCall(PetscStrcmp(product->alg,"default",&flg));
21364222ddf1SHong Zhang   if (flg) {
21379566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21384222ddf1SHong Zhang   }
21394222ddf1SHong Zhang 
21404222ddf1SHong Zhang   /* Get runtime option */
21414222ddf1SHong Zhang   if (product->api_user) {
2142d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatMatMatMult","Mat");
21439566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-matmatmatmult_via","Algorithmic approach","MatMatMatMult",algTypes,nalg,algTypes[alg],&alg,&flg));
2144d0609cedSBarry Smith     PetscOptionsEnd();
21454222ddf1SHong Zhang   } else {
2146d0609cedSBarry Smith     PetscOptionsBegin(PetscObjectComm((PetscObject)C),((PetscObject)C)->prefix,"MatProduct_ABC","Mat");
21479566063dSJacob Faibussowitsch     PetscCall(PetscOptionsEList("-mat_product_algorithm","Algorithmic approach","MatProduct_ABC",algTypes,nalg,algTypes[alg],&alg,&flg));
2148d0609cedSBarry Smith     PetscOptionsEnd();
21494222ddf1SHong Zhang   }
21504222ddf1SHong Zhang   if (flg) {
21519566063dSJacob Faibussowitsch     PetscCall(MatProductSetAlgorithm(C,(MatProductAlgorithm)algTypes[alg]));
21524222ddf1SHong Zhang   }
21534222ddf1SHong Zhang 
21544222ddf1SHong Zhang   C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_SeqAIJ_SeqAIJ_SeqAIJ;
21554222ddf1SHong Zhang   C->ops->productsymbolic    = MatProductSymbolic_ABC;
21564222ddf1SHong Zhang   PetscFunctionReturn(0);
21574222ddf1SHong Zhang }
21584222ddf1SHong Zhang 
21594222ddf1SHong Zhang PetscErrorCode MatProductSetFromOptions_SeqAIJ(Mat C)
21604222ddf1SHong Zhang {
21614222ddf1SHong Zhang   Mat_Product    *product = C->product;
21624222ddf1SHong Zhang 
21634222ddf1SHong Zhang   PetscFunctionBegin;
21644222ddf1SHong Zhang   switch (product->type) {
21654222ddf1SHong Zhang   case MATPRODUCT_AB:
21669566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_AB(C));
21674222ddf1SHong Zhang     break;
21684222ddf1SHong Zhang   case MATPRODUCT_AtB:
21699566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_AtB(C));
21704222ddf1SHong Zhang     break;
21714222ddf1SHong Zhang   case MATPRODUCT_ABt:
21729566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_ABt(C));
21734222ddf1SHong Zhang     break;
21744222ddf1SHong Zhang   case MATPRODUCT_PtAP:
21759566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_PtAP(C));
21764222ddf1SHong Zhang     break;
21774222ddf1SHong Zhang   case MATPRODUCT_RARt:
21789566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_RARt(C));
21794222ddf1SHong Zhang     break;
21804222ddf1SHong Zhang   case MATPRODUCT_ABC:
21819566063dSJacob Faibussowitsch     PetscCall(MatProductSetFromOptions_SeqAIJ_ABC(C));
21824222ddf1SHong Zhang     break;
21836718818eSStefano Zampini   default:
21846718818eSStefano Zampini     break;
21854222ddf1SHong Zhang   }
2186d013fc79Sandi selinger   PetscFunctionReturn(0);
2187d013fc79Sandi selinger }
2188