1d50806bdSBarry Smith /* 2a50f8bf6SHong Zhang Defines matrix-matrix product routines for pairs of AIJ matrices 3d50806bdSBarry Smith C = A * B 4d50806bdSBarry Smith */ 5d50806bdSBarry Smith 6c1f4806aSKris Buschelman #include "src/mat/impls/aij/seq/aij.h" /*I "petscmat.h" I*/ 770f19b1fSKris Buschelman #include "src/mat/utils/freespace.h" 82d09714cSHong Zhang #include "src/mat/impls/aij/mpi/mpiaij.h" 9d50806bdSBarry Smith 101c239cc6SHong Zhang /* 11c5db241fSHong Zhang Initialize a linked list 12c5db241fSHong Zhang Input Parameters: 13c5db241fSHong Zhang lnk_init - the initial index value indicating the entry in the list is not set yet 14c5db241fSHong Zhang nlnk - max length of the list 15c5db241fSHong Zhang lnk - linked list(an integer array) that is allocated 16c5db241fSHong Zhang output Parameters: 17c5db241fSHong Zhang lnk - the linked list with all values set as lnk_int 18c5db241fSHong Zhang */ 19c5db241fSHong Zhang #define LNKLISTINITIALIZE(lnk_init,nlnk,lnk){\ 20c5db241fSHong Zhang int _i;\ 21c5db241fSHong Zhang for (_i=0; _i<nlnk; _i++) lnk[_i] = lnk_init;\ 22c5db241fSHong Zhang } 23c5db241fSHong Zhang 24c5db241fSHong Zhang /* 251c239cc6SHong Zhang Add a index set into a sorted linked list 26a50f8bf6SHong Zhang Input Parameters: 271c239cc6SHong Zhang nidx - number of input indices 281c239cc6SHong Zhang indices - interger array 29c5db241fSHong Zhang lnk_head - the header of the list 30c5db241fSHong Zhang lnk_init - the initial index value indicating the entry in the list is not set yet 311c239cc6SHong Zhang lnk - linked list(an integer array) that is created 32a50f8bf6SHong Zhang output Parameters: 331c239cc6SHong Zhang nlnk - number of newly added indices 341c239cc6SHong Zhang lnk - the sorted(increasing order) linked list containing new and non-redundate entries from indices 351c239cc6SHong Zhang */ 36c5db241fSHong Zhang #define LNKLISTADD(nidx,indices,lnk_head,lnk_init,nlnk,lnk){\ 37c5db241fSHong Zhang int _k,_entry,_lidx=lnk_head,_idx;\ 38a50f8bf6SHong Zhang nlnk = 0;\ 39a50f8bf6SHong Zhang _k=nidx;\ 40a50f8bf6SHong Zhang while (_k){/* assume indices are almost in increasing order, starting from its end saves computation */\ 41a50f8bf6SHong Zhang _entry = indices[--_k];\ 42c5db241fSHong Zhang if (lnk[_entry] == lnk_init) { /* new col */\ 43a50f8bf6SHong Zhang do {\ 44a50f8bf6SHong Zhang _idx = _lidx;\ 45a50f8bf6SHong Zhang _lidx = lnk[_idx];\ 46a50f8bf6SHong Zhang } while (_entry > _lidx);\ 47a50f8bf6SHong Zhang lnk[_idx] = _entry;\ 48a50f8bf6SHong Zhang lnk[_entry] = _lidx;\ 49a50f8bf6SHong Zhang nlnk++;\ 50a50f8bf6SHong Zhang }\ 51a50f8bf6SHong Zhang }\ 521c239cc6SHong Zhang } 53c5db241fSHong Zhang /* 54c5db241fSHong Zhang Copy data on the list into an array, then initialize the list 55c5db241fSHong Zhang Input Parameters: 56c5db241fSHong Zhang lnk_head - the header of the list 57c5db241fSHong Zhang lnk_init - the initial index value indicating the entry in the list is not set yet 58c5db241fSHong Zhang nlnk - number of data on the list to be copied 59c5db241fSHong Zhang lnk - linked list 60c5db241fSHong Zhang output Parameters: 61c5db241fSHong Zhang indices - array that contains the copied data 62c5db241fSHong Zhang */ 63c5db241fSHong Zhang #define LNKLISTCLEAR(lnk_head,lnk_init,nlnk,lnk,indices){\ 64c5db241fSHong Zhang int _j,_idx=lnk_head,_idx0;\ 65c5db241fSHong Zhang for (_j=0; _j<nlnk; _j++){\ 66c5db241fSHong Zhang _idx0 = _idx; _idx = lnk[_idx0];\ 67c5db241fSHong Zhang *(indices+_j) = _idx;\ 68c5db241fSHong Zhang lnk[_idx0] = lnk_init;\ 69c5db241fSHong Zhang }\ 70c5db241fSHong Zhang lnk[_idx] = lnk_init;\ 71c5db241fSHong Zhang } 721c239cc6SHong Zhang 7326be0446SHong Zhang typedef struct { /* used by MatMatMult_MPIAIJ_MPIAIJ for reusing symbolic mat product */ 7426be0446SHong Zhang IS isrowa,isrowb,iscolb; 7526be0446SHong Zhang Mat *aseq,*bseq,C_seq; 7626be0446SHong Zhang } Mat_MatMatMultMPI; 7726be0446SHong Zhang 782216b3a4SKris Buschelman static int logkey_matmatmult_symbolic = 0; 792216b3a4SKris Buschelman static int logkey_matmatmult_numeric = 0; 802216b3a4SKris Buschelman 81c1f4806aSKris Buschelman #undef __FUNCT__ 82c1f4806aSKris Buschelman #define __FUNCT__ "MatMatMult" 835c66b693SKris Buschelman /*@ 845c66b693SKris Buschelman MatMatMult - Performs Matrix-Matrix Multiplication C=A*B. 8594e3eecaSKris Buschelman 865c66b693SKris Buschelman Collective on Mat 87d50806bdSBarry Smith 885c66b693SKris Buschelman Input Parameters: 895c66b693SKris Buschelman + A - the left matrix 901c741599SHong Zhang . B - the right matrix 911c741599SHong Zhang . scall - either MAT_INITIAL_MATRIX or MAT_REUSE_MATRIX 92c5db241fSHong Zhang - fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)) 935c66b693SKris Buschelman 945c66b693SKris Buschelman Output Parameters: 955c66b693SKris Buschelman . C - the product matrix 965c66b693SKris Buschelman 975c66b693SKris Buschelman Notes: 985c66b693SKris Buschelman C will be created and must be destroyed by the user with MatDestroy(). 995c66b693SKris Buschelman 1004d3841fdSKris Buschelman This routine is currently only implemented for pairs of SeqAIJ matrices and classes 1014d3841fdSKris Buschelman which inherit from SeqAIJ. C will be of type MATSEQAIJ. 1025c66b693SKris Buschelman 1035c66b693SKris Buschelman Level: intermediate 1045c66b693SKris Buschelman 1055c66b693SKris Buschelman .seealso: MatMatMultSymbolic(),MatMatMultNumeric() 1065c66b693SKris Buschelman @*/ 1071c741599SHong Zhang int MatMatMult(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) 1082d09714cSHong Zhang { 109d50806bdSBarry Smith int ierr; 1102d09714cSHong Zhang 111d50806bdSBarry Smith PetscFunctionBegin; 1124482741eSBarry Smith PetscValidHeaderSpecific(A,MAT_COOKIE,1); 113c9780b6fSBarry Smith PetscValidType(A,1); 1145c66b693SKris Buschelman MatPreallocated(A); 1155c66b693SKris Buschelman if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 1165c66b693SKris Buschelman if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1174482741eSBarry Smith PetscValidHeaderSpecific(B,MAT_COOKIE,2); 118c9780b6fSBarry Smith PetscValidType(B,2); 1195c66b693SKris Buschelman MatPreallocated(B); 1205c66b693SKris Buschelman if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 1215c66b693SKris Buschelman if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 1224482741eSBarry Smith PetscValidPointer(C,3); 1235c66b693SKris Buschelman if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N); 124d50806bdSBarry Smith 1251c24bd37SHong Zhang if (fill <=0.0) SETERRQ1(PETSC_ERR_ARG_SIZ,"fill=%g must be > 0.0",fill); 126c5db241fSHong Zhang 1276284ec50SHong Zhang ierr = PetscLogEventBegin(MAT_MatMult,A,B,0,0);CHKERRQ(ierr); 1281c741599SHong Zhang ierr = (*A->ops->matmult)(A,B,scall,fill,C);CHKERRQ(ierr); 1296284ec50SHong Zhang ierr = PetscLogEventEnd(MAT_MatMult,A,B,0,0);CHKERRQ(ierr); 1304d3841fdSKris Buschelman 1316284ec50SHong Zhang PetscFunctionReturn(0); 1326284ec50SHong Zhang } 1336284ec50SHong Zhang 1346284ec50SHong Zhang #undef __FUNCT__ 1356284ec50SHong Zhang #define __FUNCT__ "MatMatMult_MPIAIJ_MPIAIJ" 1361c741599SHong Zhang int MatMatMult_MPIAIJ_MPIAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill, Mat *C) 1372d09714cSHong Zhang { 13826be0446SHong Zhang int ierr; 1396284ec50SHong Zhang 1406284ec50SHong Zhang PetscFunctionBegin; 14126be0446SHong Zhang if (scall == MAT_INITIAL_MATRIX){ 142*d6bb3c2dSHong Zhang ierr = MatMatMultSymbolic_MPIAIJ_MPIAIJ(A,B,fill,C);CHKERRQ(ierr);/* numeric product is computed as well */ 143*d6bb3c2dSHong Zhang } else if (scall == MAT_REUSE_MATRIX){ 14426be0446SHong Zhang ierr = MatMatMultNumeric_MPIAIJ_MPIAIJ(A,B,*C);CHKERRQ(ierr); 145*d6bb3c2dSHong Zhang } else { 146*d6bb3c2dSHong Zhang SETERRQ1(PETSC_ERR_ARG_WRONG,"Invalid MatReuse %d",scall); 147*d6bb3c2dSHong Zhang } 148d50806bdSBarry Smith PetscFunctionReturn(0); 149d50806bdSBarry Smith } 1505c66b693SKris Buschelman 1515c66b693SKris Buschelman #undef __FUNCT__ 1525c66b693SKris Buschelman #define __FUNCT__ "MatMatMult_SeqAIJ_SeqAIJ" 1531c741599SHong Zhang int MatMatMult_SeqAIJ_SeqAIJ(Mat A,Mat B,MatReuse scall,PetscReal fill,Mat *C) { 1545c66b693SKris Buschelman int ierr; 1555c66b693SKris Buschelman 1565c66b693SKris Buschelman PetscFunctionBegin; 15726be0446SHong Zhang if (scall == MAT_INITIAL_MATRIX){ 15826be0446SHong Zhang ierr = MatMatMultSymbolic_SeqAIJ_SeqAIJ(A,B,fill,C);CHKERRQ(ierr); 15926be0446SHong Zhang } 16026be0446SHong Zhang ierr = MatMatMultNumeric_SeqAIJ_SeqAIJ(A,B,*C);CHKERRQ(ierr); 1615c66b693SKris Buschelman PetscFunctionReturn(0); 1625c66b693SKris Buschelman } 1635c66b693SKris Buschelman 164c1f4806aSKris Buschelman #undef __FUNCT__ 165c1f4806aSKris Buschelman #define __FUNCT__ "MatMatMultSymbolic" 1665c66b693SKris Buschelman /*@ 1675c66b693SKris Buschelman MatMatMultSymbolic - Performs construction, preallocation, and computes the ij structure 1685c66b693SKris Buschelman of the matrix-matrix product C=A*B. Call this routine before calling MatMatMultNumeric(). 1695c66b693SKris Buschelman 1705c66b693SKris Buschelman Collective on Mat 1715c66b693SKris Buschelman 1725c66b693SKris Buschelman Input Parameters: 1735c66b693SKris Buschelman + A - the left matrix 174c5db241fSHong Zhang . B - the right matrix 175c5db241fSHong Zhang - fill - expected fill as ratio of nnz(C)/(nnz(A) + nnz(B)) 1765c66b693SKris Buschelman 1775c66b693SKris Buschelman Output Parameters: 1785c66b693SKris Buschelman . C - the matrix containing the ij structure of product matrix 1795c66b693SKris Buschelman 1805c66b693SKris Buschelman Notes: 1814d3841fdSKris Buschelman C will be created as a MATSEQAIJ matrix and must be destroyed by the user with MatDestroy(). 1825c66b693SKris Buschelman 1834d3841fdSKris Buschelman This routine is currently only implemented for SeqAIJ matrices and classes which inherit from SeqAIJ. 1845c66b693SKris Buschelman 1855c66b693SKris Buschelman Level: intermediate 1865c66b693SKris Buschelman 1875c66b693SKris Buschelman .seealso: MatMatMult(),MatMatMultNumeric() 1885c66b693SKris Buschelman @*/ 189c5db241fSHong Zhang int MatMatMultSymbolic(Mat A,Mat B,PetscReal fill,Mat *C) { 1905c66b693SKris Buschelman /* Perhaps this "interface" routine should be moved into the interface directory.*/ 1915c66b693SKris Buschelman /* To facilitate implementations with varying types, QueryFunction is used.*/ 1925c66b693SKris Buschelman /* It is assumed that implementations will be composed as "MatMatMultSymbolic_<type of A><type of B>". */ 1935c66b693SKris Buschelman int ierr; 1944d3841fdSKris Buschelman char symfunct[80]; 195c5db241fSHong Zhang int (*symbolic)(Mat,Mat,PetscReal,Mat *); 1965c66b693SKris Buschelman 1975c66b693SKris Buschelman PetscFunctionBegin; 1984482741eSBarry Smith PetscValidHeaderSpecific(A,MAT_COOKIE,1); 199c9780b6fSBarry Smith PetscValidType(A,1); 2005c66b693SKris Buschelman MatPreallocated(A); 2015c66b693SKris Buschelman if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 2025c66b693SKris Buschelman if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2035c66b693SKris Buschelman 2044482741eSBarry Smith PetscValidHeaderSpecific(B,MAT_COOKIE,2); 205c9780b6fSBarry Smith PetscValidType(B,2); 2065c66b693SKris Buschelman MatPreallocated(B); 2075c66b693SKris Buschelman if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 2085c66b693SKris Buschelman if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 2094482741eSBarry Smith PetscValidPointer(C,3); 2104482741eSBarry Smith 2115c66b693SKris Buschelman if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N); 2121c24bd37SHong Zhang if (fill <=0.0) SETERRQ1(PETSC_ERR_ARG_SIZ,"fill=%g must be > 0.0",fill); 2135c66b693SKris Buschelman 2144d3841fdSKris Buschelman /* Currently only _seqaijseqaij is implemented, so just query for it in A and B. */ 2154d3841fdSKris Buschelman /* When other implementations exist, attack the multiple dispatch problem. */ 2164d3841fdSKris Buschelman ierr = PetscStrcpy(symfunct,"MatMatMultSymbolic_seqaijseqaij");CHKERRQ(ierr); 2174d3841fdSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,symfunct,(PetscVoidFunction)&symbolic);CHKERRQ(ierr); 2184d3841fdSKris Buschelman if (!symbolic) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for B of type %s",B->type_name); 2194d3841fdSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)A,symfunct,(PetscVoidFunction)&symbolic);CHKERRQ(ierr); 2204d3841fdSKris Buschelman if (!symbolic) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for A of type %s",A->type_name); 221c5db241fSHong Zhang ierr = (*symbolic)(A,B,fill,C);CHKERRQ(ierr); 2225c66b693SKris Buschelman 2235c66b693SKris Buschelman PetscFunctionReturn(0); 2245c66b693SKris Buschelman } 2251c24bd37SHong Zhang 2261c24bd37SHong Zhang EXTERN int MatDestroy_MPIAIJ(Mat); 22726be0446SHong Zhang #undef __FUNCT__ 22826be0446SHong Zhang #define __FUNCT__ "MatDestroy_MPIAIJ_MatMatMult" 22926be0446SHong Zhang int MatDestroy_MPIAIJ_MatMatMult(Mat A) 23026be0446SHong Zhang { 23126be0446SHong Zhang int ierr; 23226be0446SHong Zhang Mat_MatMatMultMPI *mult=(Mat_MatMatMultMPI*)A->spptr; 23326be0446SHong Zhang 23426be0446SHong Zhang PetscFunctionBegin; 235*d6bb3c2dSHong Zhang ierr = ISDestroy(mult->isrowb);CHKERRQ(ierr); 236*d6bb3c2dSHong Zhang ierr = ISDestroy(mult->iscolb);CHKERRQ(ierr); 237*d6bb3c2dSHong Zhang ierr = ISDestroy(mult->isrowa);CHKERRQ(ierr); 238*d6bb3c2dSHong Zhang ierr = MatDestroyMatrices(1,&mult->aseq);CHKERRQ(ierr); 239*d6bb3c2dSHong Zhang ierr = MatDestroyMatrices(1,&mult->bseq);CHKERRQ(ierr); 240*d6bb3c2dSHong Zhang ierr = MatDestroy(mult->C_seq);CHKERRQ(ierr); 24126be0446SHong Zhang ierr = PetscFree(mult);CHKERRQ(ierr); 242*d6bb3c2dSHong Zhang 24326be0446SHong Zhang ierr = MatDestroy_MPIAIJ(A);CHKERRQ(ierr); 24426be0446SHong Zhang 24526be0446SHong Zhang PetscFunctionReturn(0); 24626be0446SHong Zhang } 24758c24d83SHong Zhang 24858c24d83SHong Zhang #undef __FUNCT__ 24926be0446SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_MPIAIJ_MPIAIJ" 25026be0446SHong Zhang int MatMatMultSymbolic_MPIAIJ_MPIAIJ(Mat A,Mat B,PetscReal fill,Mat *C) 25126be0446SHong Zhang { 25226be0446SHong Zhang Mat_MPIAIJ *a = (Mat_MPIAIJ*)A->data; 25326be0446SHong Zhang int ierr,*idx,i,start,end,ncols,imark,nzA,nzB,*cmap; 25426be0446SHong Zhang Mat_MatMatMultMPI *mult; 25526be0446SHong Zhang 25626be0446SHong Zhang PetscFunctionBegin; 257*d6bb3c2dSHong Zhang ierr = PetscNew(Mat_MatMatMultMPI,&mult);CHKERRQ(ierr); 258*d6bb3c2dSHong Zhang 25926be0446SHong Zhang /* create a seq matrix B_seq = submatrix of B by taking rows of B that equal to nonzero col of A */ 26026be0446SHong Zhang start = a->cstart; 26126be0446SHong Zhang cmap = a->garray; 26226be0446SHong Zhang nzA = a->A->n; 26326be0446SHong Zhang nzB = a->B->n; 26426be0446SHong Zhang ierr = PetscMalloc((nzA+nzB)*sizeof(int), &idx);CHKERRQ(ierr); 26526be0446SHong Zhang ncols = 0; 26626be0446SHong Zhang for (i=0; i<nzB; i++) { 26726be0446SHong Zhang if (cmap[i] < start) idx[ncols++] = cmap[i]; 26826be0446SHong Zhang else break; 26926be0446SHong Zhang } 27026be0446SHong Zhang imark = i; 27126be0446SHong Zhang for (i=0; i<nzA; i++) idx[ncols++] = start + i; 27226be0446SHong Zhang for (i=imark; i<nzB; i++) idx[ncols++] = cmap[i]; 273*d6bb3c2dSHong Zhang ierr = ISCreateGeneral(PETSC_COMM_SELF,ncols,idx,&mult->isrowb);CHKERRQ(ierr); 27426be0446SHong Zhang ierr = PetscFree(idx);CHKERRQ(ierr); 275*d6bb3c2dSHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,B->N,0,1,&mult->iscolb);CHKERRQ(ierr); 276*d6bb3c2dSHong Zhang ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_INITIAL_MATRIX,&mult->bseq);CHKERRQ(ierr) 27726be0446SHong Zhang 27826be0446SHong Zhang /* create a seq matrix A_seq = submatrix of A by taking all local rows of A */ 27926be0446SHong Zhang start = a->rstart; end = a->rend; 280*d6bb3c2dSHong Zhang ierr = ISCreateStride(PETSC_COMM_SELF,end-start,start,1,&mult->isrowa);CHKERRQ(ierr); 281*d6bb3c2dSHong Zhang ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_INITIAL_MATRIX,&mult->aseq);CHKERRQ(ierr); 28226be0446SHong Zhang 28326be0446SHong Zhang /* compute C_seq = A_seq * B_seq */ 284*d6bb3c2dSHong Zhang ierr = MatMatMult_SeqAIJ_SeqAIJ(mult->aseq[0],mult->bseq[0],MAT_INITIAL_MATRIX,fill,&mult->C_seq);CHKERRQ(ierr); 28526be0446SHong Zhang 28626be0446SHong Zhang /* create mpi matrix C by concatinating C_seq */ 287*d6bb3c2dSHong Zhang ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); /* prevent C_seq being destroyed by MatMerge() */ 288*d6bb3c2dSHong Zhang ierr = MatMerge(A->comm,mult->C_seq,MAT_INITIAL_MATRIX,C);CHKERRQ(ierr); 28926be0446SHong Zhang 29026be0446SHong Zhang /* attach the supporting struct to C for reuse of symbolic C */ 29126be0446SHong Zhang (*C)->spptr = (void*)mult; 29226be0446SHong Zhang (*C)->ops->destroy = MatDestroy_MPIAIJ_MatMatMult; 29326be0446SHong Zhang 29426be0446SHong Zhang PetscFunctionReturn(0); 29526be0446SHong Zhang } 29626be0446SHong Zhang 29726be0446SHong Zhang #undef __FUNCT__ 29826be0446SHong Zhang #define __FUNCT__ "MatMatMultSymbolic_SeqAIJ_SeqAIJ" 29926be0446SHong Zhang int MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A,Mat B,PetscReal fill,Mat *C) 30058c24d83SHong Zhang { 30158c24d83SHong Zhang int ierr; 30258c24d83SHong Zhang FreeSpaceList free_space=PETSC_NULL,current_space=PETSC_NULL; 30358c24d83SHong Zhang Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data,*b=(Mat_SeqAIJ*)B->data,*c; 30458c24d83SHong Zhang int *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj; 3051c24bd37SHong Zhang int *ci,*cj,*lnk; 3065c66b693SKris Buschelman int am=A->M,bn=B->N,bm=B->M; 307c5db241fSHong Zhang int i,j,anzi,brow,bnzj,cnzi,nlnk,lnk_init=-1,nspacedouble=0; 30858c24d83SHong Zhang MatScalar *ca; 30958c24d83SHong Zhang 31058c24d83SHong Zhang PetscFunctionBegin; 3115c66b693SKris Buschelman /* Start timers */ 31258c24d83SHong Zhang ierr = PetscLogEventBegin(logkey_matmatmult_symbolic,A,B,0,0);CHKERRQ(ierr); 31358c24d83SHong Zhang /* Set up */ 31458c24d83SHong Zhang /* Allocate ci array, arrays for fill computation and */ 31558c24d83SHong Zhang /* free space for accumulating nonzero column info */ 31658c24d83SHong Zhang ierr = PetscMalloc(((am+1)+1)*sizeof(int),&ci);CHKERRQ(ierr); 31758c24d83SHong Zhang ci[0] = 0; 31858c24d83SHong Zhang 31958c24d83SHong Zhang ierr = PetscMalloc((bn+1)*sizeof(int),&lnk);CHKERRQ(ierr); 320c5db241fSHong Zhang LNKLISTINITIALIZE(lnk_init,bn,lnk); 32158c24d83SHong Zhang 322c5db241fSHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 323*d6bb3c2dSHong Zhang ierr = GetMoreSpace((int)(fill*(ai[am]+bi[bm])),&free_space);CHKERRQ(ierr); 32458c24d83SHong Zhang current_space = free_space; 32558c24d83SHong Zhang 32658c24d83SHong Zhang /* Determine symbolic info for each row of the product: */ 32758c24d83SHong Zhang for (i=0;i<am;i++) { 32858c24d83SHong Zhang anzi = ai[i+1] - ai[i]; 32958c24d83SHong Zhang cnzi = 0; 33058c24d83SHong Zhang lnk[bn] = bn; 3312d09714cSHong Zhang j = anzi; 3322d09714cSHong Zhang aj = a->j + ai[i]; 3332d09714cSHong Zhang while (j){/* assume cols are almost in increasing order, starting from its end saves computation */ 3342d09714cSHong Zhang j--; 3352d09714cSHong Zhang brow = *(aj + j); 33658c24d83SHong Zhang bnzj = bi[brow+1] - bi[brow]; 33758c24d83SHong Zhang bjj = bj + bi[brow]; 3381c239cc6SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 339c5db241fSHong Zhang LNKLISTADD(bnzj,bjj,bn,lnk_init,nlnk,lnk); 3401c239cc6SHong Zhang cnzi += nlnk; 34158c24d83SHong Zhang } 34258c24d83SHong Zhang 34358c24d83SHong Zhang /* If free space is not available, make more free space */ 34458c24d83SHong Zhang /* Double the amount of total space in the list */ 34558c24d83SHong Zhang if (current_space->local_remaining<cnzi) { 34626be0446SHong Zhang /* printf("MatMatMultSymbolic_SeqAIJ_SeqAIJ()...%d -th row, double space ...\n",i);*/ 34758c24d83SHong Zhang ierr = GetMoreSpace(current_space->total_array_size,¤t_space);CHKERRQ(ierr); 348c5db241fSHong Zhang nspacedouble++; 34958c24d83SHong Zhang } 35058c24d83SHong Zhang 351c5db241fSHong Zhang /* Copy data into free space, then initialize lnk */ 352c5db241fSHong Zhang LNKLISTCLEAR(bn,lnk_init,cnzi,lnk,current_space->array); 353c5db241fSHong Zhang current_space->array += cnzi; 35458c24d83SHong Zhang 35558c24d83SHong Zhang current_space->local_used += cnzi; 35658c24d83SHong Zhang current_space->local_remaining -= cnzi; 35758c24d83SHong Zhang 35858c24d83SHong Zhang ci[i+1] = ci[i] + cnzi; 35958c24d83SHong Zhang } 36058c24d83SHong Zhang 36158c24d83SHong Zhang /* Column indices are in the list of free space */ 36258c24d83SHong Zhang /* Allocate space for cj, initialize cj, and */ 36358c24d83SHong Zhang /* destroy list of free space and other temporary array(s) */ 36458c24d83SHong Zhang ierr = PetscMalloc((ci[am]+1)*sizeof(int),&cj);CHKERRQ(ierr); 36558c24d83SHong Zhang ierr = MakeSpaceContiguous(&free_space,cj);CHKERRQ(ierr); 36658c24d83SHong Zhang ierr = PetscFree(lnk);CHKERRQ(ierr); 36758c24d83SHong Zhang 36858c24d83SHong Zhang /* Allocate space for ca */ 36958c24d83SHong Zhang ierr = PetscMalloc((ci[am]+1)*sizeof(MatScalar),&ca);CHKERRQ(ierr); 37058c24d83SHong Zhang ierr = PetscMemzero(ca,(ci[am]+1)*sizeof(MatScalar));CHKERRQ(ierr); 37158c24d83SHong Zhang 37226be0446SHong Zhang /* put together the new symbolic matrix */ 37358c24d83SHong Zhang ierr = MatCreateSeqAIJWithArrays(A->comm,am,bn,ci,cj,ca,C);CHKERRQ(ierr); 37458c24d83SHong Zhang 37558c24d83SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 37658c24d83SHong Zhang /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 37758c24d83SHong Zhang c = (Mat_SeqAIJ *)((*C)->data); 37858c24d83SHong Zhang c->freedata = PETSC_TRUE; 37958c24d83SHong Zhang c->nonew = 0; 38058c24d83SHong Zhang 38158c24d83SHong Zhang ierr = PetscLogEventEnd(logkey_matmatmult_symbolic,A,B,0,0);CHKERRQ(ierr); 382c5db241fSHong Zhang PetscLogInfo((PetscObject)(*C),"Number of calls to GetMoreSpace(): %d\n",nspacedouble); 38358c24d83SHong Zhang PetscFunctionReturn(0); 38458c24d83SHong Zhang } 385d50806bdSBarry Smith 386c1f4806aSKris Buschelman #undef __FUNCT__ 387c1f4806aSKris Buschelman #define __FUNCT__ "MatMatMultNumeric" 3885c66b693SKris Buschelman /*@ 3895c66b693SKris Buschelman MatMatMultNumeric - Performs the numeric matrix-matrix product. 3905c66b693SKris Buschelman Call this routine after first calling MatMatMultSymbolic(). 3915c66b693SKris Buschelman 3925c66b693SKris Buschelman Collective on Mat 3935c66b693SKris Buschelman 3945c66b693SKris Buschelman Input Parameters: 3955c66b693SKris Buschelman + A - the left matrix 3965c66b693SKris Buschelman - B - the right matrix 3975c66b693SKris Buschelman 3985c66b693SKris Buschelman Output Parameters: 3995c66b693SKris Buschelman . C - the product matrix, whose ij structure was defined from MatMatMultSymbolic(). 4005c66b693SKris Buschelman 4015c66b693SKris Buschelman Notes: 4025c66b693SKris Buschelman C must have been created with MatMatMultSymbolic. 4035c66b693SKris Buschelman 4045c66b693SKris Buschelman This routine is currently only implemented for SeqAIJ type matrices. 4055c66b693SKris Buschelman 4065c66b693SKris Buschelman Level: intermediate 4075c66b693SKris Buschelman 4085c66b693SKris Buschelman .seealso: MatMatMult(),MatMatMultSymbolic() 4095c66b693SKris Buschelman @*/ 4105c66b693SKris Buschelman int MatMatMultNumeric(Mat A,Mat B,Mat C){ 4115c66b693SKris Buschelman /* Perhaps this "interface" routine should be moved into the interface directory.*/ 4125c66b693SKris Buschelman /* To facilitate implementations with varying types, QueryFunction is used.*/ 4135c66b693SKris Buschelman /* It is assumed that implementations will be composed as "MatMatMultNumeric_<type of A><type of B>". */ 4145c66b693SKris Buschelman int ierr; 4154d3841fdSKris Buschelman char numfunct[80]; 4165c66b693SKris Buschelman int (*numeric)(Mat,Mat,Mat); 4175c66b693SKris Buschelman 4185c66b693SKris Buschelman PetscFunctionBegin; 4195c66b693SKris Buschelman 4204482741eSBarry Smith PetscValidHeaderSpecific(A,MAT_COOKIE,1); 421c9780b6fSBarry Smith PetscValidType(A,1); 4225c66b693SKris Buschelman MatPreallocated(A); 4235c66b693SKris Buschelman if (!A->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 4245c66b693SKris Buschelman if (A->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 4255c66b693SKris Buschelman 4264482741eSBarry Smith PetscValidHeaderSpecific(B,MAT_COOKIE,2); 427c9780b6fSBarry Smith PetscValidType(B,2); 4285c66b693SKris Buschelman MatPreallocated(B); 4295c66b693SKris Buschelman if (!B->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 4305c66b693SKris Buschelman if (B->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 4315c66b693SKris Buschelman 4324482741eSBarry Smith PetscValidHeaderSpecific(C,MAT_COOKIE,3); 433c9780b6fSBarry Smith PetscValidType(C,3); 4345c66b693SKris Buschelman MatPreallocated(C); 4355c66b693SKris Buschelman if (!C->assembled) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for unassembled matrix"); 4365c66b693SKris Buschelman if (C->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 4375c66b693SKris Buschelman 4385c66b693SKris Buschelman if (B->N!=C->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->N,C->N); 4395c66b693SKris Buschelman if (B->M!=A->N) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",B->M,A->N); 4405c66b693SKris Buschelman if (A->M!=C->M) SETERRQ2(PETSC_ERR_ARG_SIZ,"Matrix dimensions are incompatible, %d != %d",A->M,C->M); 4415c66b693SKris Buschelman 4424d3841fdSKris Buschelman /* Currently only _seqaijseqaij is implemented, so just query for it in A and B. */ 4434d3841fdSKris Buschelman /* When other implementations exist, attack the multiple dispatch problem. */ 4444d3841fdSKris Buschelman ierr = PetscStrcpy(numfunct,"MatMatMultNumeric_seqaijseqaij");CHKERRQ(ierr); 4454d3841fdSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)A,numfunct,(PetscVoidFunction)&numeric);CHKERRQ(ierr); 4464d3841fdSKris Buschelman if (!numeric) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for A of type %s",A->type_name); 4474d3841fdSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,numfunct,(PetscVoidFunction)&numeric);CHKERRQ(ierr); 4484d3841fdSKris Buschelman if (!numeric) SETERRQ1(PETSC_ERR_SUP,"C=A*B not implemented for B of type %s",B->type_name); 4494d3841fdSKris Buschelman 4505c66b693SKris Buschelman ierr = (*numeric)(A,B,C);CHKERRQ(ierr); 4515c66b693SKris Buschelman 4525c66b693SKris Buschelman PetscFunctionReturn(0); 4535c66b693SKris Buschelman } 4545c66b693SKris Buschelman 455*d6bb3c2dSHong Zhang /* This routine is called ONLY in the case of reusing previously computed symbolic C */ 456d50806bdSBarry Smith #undef __FUNCT__ 45726be0446SHong Zhang #define __FUNCT__ "MatMatMultNumeric_MPIAIJ_MPIAIJ" 45826be0446SHong Zhang int MatMatMultNumeric_MPIAIJ_MPIAIJ(Mat A,Mat B,Mat C) 45926be0446SHong Zhang { 460*d6bb3c2dSHong Zhang int ierr; 461*d6bb3c2dSHong Zhang Mat_MatMatMultMPI *mult=(Mat_MatMatMultMPI*)C->spptr; 462*d6bb3c2dSHong Zhang 46326be0446SHong Zhang PetscFunctionBegin; 464*d6bb3c2dSHong Zhang ierr = MatGetSubMatrices(B,1,&mult->isrowb,&mult->iscolb,MAT_REUSE_MATRIX,&mult->bseq);CHKERRQ(ierr) 465*d6bb3c2dSHong Zhang ierr = MatGetSubMatrices(A,1,&mult->isrowa,&mult->isrowb,MAT_REUSE_MATRIX,&mult->aseq);CHKERRQ(ierr); 466*d6bb3c2dSHong Zhang ierr = MatMatMult_SeqAIJ_SeqAIJ(mult->aseq[0],mult->bseq[0],MAT_REUSE_MATRIX,0.0,&mult->C_seq);CHKERRQ(ierr); 467*d6bb3c2dSHong Zhang 468*d6bb3c2dSHong Zhang ierr = PetscObjectReference((PetscObject)mult->C_seq);CHKERRQ(ierr); 469*d6bb3c2dSHong Zhang ierr = MatMerge(A->comm,mult->C_seq,MAT_REUSE_MATRIX,&C);CHKERRQ(ierr); 470*d6bb3c2dSHong Zhang 47126be0446SHong Zhang PetscFunctionReturn(0); 47226be0446SHong Zhang } 47326be0446SHong Zhang 47426be0446SHong Zhang #undef __FUNCT__ 47526be0446SHong Zhang #define __FUNCT__ "MatMatMultNumeric_SeqAIJ_SeqAIJ" 47626be0446SHong Zhang int MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat A,Mat B,Mat C) 477d50806bdSBarry Smith { 47894e3eecaSKris Buschelman int ierr,flops=0; 479d50806bdSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 480d50806bdSBarry Smith Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 481d50806bdSBarry Smith Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; 482d50806bdSBarry Smith int *ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j,*bjj,*ci=c->i,*cj=c->j; 4835c66b693SKris Buschelman int am=A->M,cn=C->N; 48494e3eecaSKris Buschelman int i,j,k,anzi,bnzi,cnzi,brow; 485d50806bdSBarry Smith MatScalar *aa=a->a,*ba=b->a,*baj,*ca=c->a,*temp; 486d50806bdSBarry Smith 487d50806bdSBarry Smith PetscFunctionBegin; 488d50806bdSBarry Smith 4895c66b693SKris Buschelman /* Start timers */ 490d50806bdSBarry Smith ierr = PetscLogEventBegin(logkey_matmatmult_numeric,A,B,C,0);CHKERRQ(ierr); 49194e3eecaSKris Buschelman 492d50806bdSBarry Smith /* Allocate temp accumulation space to avoid searching for nonzero columns in C */ 493d50806bdSBarry Smith ierr = PetscMalloc((cn+1)*sizeof(MatScalar),&temp);CHKERRQ(ierr); 494d50806bdSBarry Smith ierr = PetscMemzero(temp,cn*sizeof(MatScalar));CHKERRQ(ierr); 495d50806bdSBarry Smith /* Traverse A row-wise. */ 496d50806bdSBarry Smith /* Build the ith row in C by summing over nonzero columns in A, */ 497d50806bdSBarry Smith /* the rows of B corresponding to nonzeros of A. */ 498d50806bdSBarry Smith for (i=0;i<am;i++) { 499d50806bdSBarry Smith anzi = ai[i+1] - ai[i]; 500d50806bdSBarry Smith for (j=0;j<anzi;j++) { 501d50806bdSBarry Smith brow = *aj++; 502d50806bdSBarry Smith bnzi = bi[brow+1] - bi[brow]; 503d50806bdSBarry Smith bjj = bj + bi[brow]; 504d50806bdSBarry Smith baj = ba + bi[brow]; 505d50806bdSBarry Smith for (k=0;k<bnzi;k++) { 506d50806bdSBarry Smith temp[bjj[k]] += (*aa)*baj[k]; 507d50806bdSBarry Smith } 508d50806bdSBarry Smith flops += 2*bnzi; 509d50806bdSBarry Smith aa++; 510d50806bdSBarry Smith } 511d50806bdSBarry Smith /* Store row back into C, and re-zero temp */ 512d50806bdSBarry Smith cnzi = ci[i+1] - ci[i]; 513d50806bdSBarry Smith for (j=0;j<cnzi;j++) { 514d50806bdSBarry Smith ca[j] = temp[cj[j]]; 515d50806bdSBarry Smith temp[cj[j]] = 0.0; 516d50806bdSBarry Smith } 517d50806bdSBarry Smith ca += cnzi; 518d50806bdSBarry Smith cj += cnzi; 519d50806bdSBarry Smith } 520716bacf3SKris Buschelman ierr = MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 521716bacf3SKris Buschelman ierr = MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 522716bacf3SKris Buschelman 523d50806bdSBarry Smith /* Free temp */ 524d50806bdSBarry Smith ierr = PetscFree(temp);CHKERRQ(ierr); 525d50806bdSBarry Smith ierr = PetscLogFlops(flops);CHKERRQ(ierr); 526d50806bdSBarry Smith ierr = PetscLogEventEnd(logkey_matmatmult_numeric,A,B,C,0);CHKERRQ(ierr); 527d50806bdSBarry Smith PetscFunctionReturn(0); 528d50806bdSBarry Smith } 529d50806bdSBarry Smith 530d50806bdSBarry Smith #undef __FUNCT__ 5315c66b693SKris Buschelman #define __FUNCT__ "RegisterMatMatMultRoutines_Private" 5325c66b693SKris Buschelman int RegisterMatMatMultRoutines_Private(Mat A) { 533d50806bdSBarry Smith int ierr; 534d50806bdSBarry Smith 535d50806bdSBarry Smith PetscFunctionBegin; 5365c66b693SKris Buschelman if (!logkey_matmatmult_symbolic) { 53726be0446SHong Zhang ierr = PetscLogEventRegister(&logkey_matmatmult_symbolic,"MatMatMultSymbolic",MAT_COOKIE);CHKERRQ(ierr); 538d50806bdSBarry Smith } 5395c66b693SKris Buschelman if (!logkey_matmatmult_numeric) { 54026be0446SHong Zhang ierr = PetscLogEventRegister(&logkey_matmatmult_numeric,"MatMatMultNumeric",MAT_COOKIE);CHKERRQ(ierr); 54194e3eecaSKris Buschelman } 542*d6bb3c2dSHong Zhang 54394e3eecaSKris Buschelman PetscFunctionReturn(0); 54494e3eecaSKris Buschelman } 545