1d50806bdSBarry Smith /* 22499ec78SHong Zhang Defines matrix-matrix product routines for pairs of SeqAIJ matrices 3d50806bdSBarry Smith C = A * B 4d50806bdSBarry Smith */ 5d50806bdSBarry Smith 6c6db04a5SJed Brown #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 7c6db04a5SJed Brown #include <../src/mat/utils/freespace.h> 8c6db04a5SJed Brown #include <petscbt.h> 9af0996ceSBarry Smith #include <petsc/private/isimpl.h> 1007475bc1SBarry Smith #include <../src/mat/impls/dense/seq/dense.h> 117bab7c10SHong Zhang 12d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C) 13d71ae5a4SJacob Faibussowitsch { 14df97dc6dSFande Kong PetscFunctionBegin; 15dbbe0bcdSBarry Smith if (C->ops->matmultnumeric) PetscCall((*C->ops->matmultnumeric)(A, B, C)); 16dbbe0bcdSBarry Smith else PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(A, B, C)); 173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18df97dc6dSFande Kong } 19df97dc6dSFande Kong 204222ddf1SHong Zhang /* Modified from MatCreateSeqAIJWithArrays() */ 21d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatSetSeqAIJWithArrays_private(MPI_Comm comm, PetscInt m, PetscInt n, PetscInt i[], PetscInt j[], PetscScalar a[], MatType mtype, Mat mat) 22d71ae5a4SJacob Faibussowitsch { 234222ddf1SHong Zhang PetscInt ii; 244222ddf1SHong Zhang Mat_SeqAIJ *aij; 25cbc6b225SStefano Zampini PetscBool isseqaij, osingle, ofree_a, ofree_ij; 265c66b693SKris Buschelman 275c66b693SKris Buschelman PetscFunctionBegin; 28aed4548fSBarry Smith PetscCheck(m <= 0 || !i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, m, n, m, n)); 304222ddf1SHong Zhang 31e4e71118SStefano Zampini if (!mtype) { 329566063dSJacob Faibussowitsch PetscCall(PetscObjectBaseTypeCompare((PetscObject)mat, MATSEQAIJ, &isseqaij)); 339566063dSJacob Faibussowitsch if (!isseqaij) PetscCall(MatSetType(mat, MATSEQAIJ)); 34e4e71118SStefano Zampini } else { 359566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, mtype)); 36e4e71118SStefano Zampini } 37cbc6b225SStefano Zampini 384222ddf1SHong Zhang aij = (Mat_SeqAIJ *)(mat)->data; 39cbc6b225SStefano Zampini osingle = aij->singlemalloc; 40cbc6b225SStefano Zampini ofree_a = aij->free_a; 41cbc6b225SStefano Zampini ofree_ij = aij->free_ij; 42cbc6b225SStefano Zampini /* changes the free flags */ 439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation_SeqAIJ(mat, MAT_SKIP_ALLOCATION, NULL)); 44cbc6b225SStefano Zampini 459566063dSJacob Faibussowitsch PetscCall(PetscFree(aij->ilen)); 469566063dSJacob Faibussowitsch PetscCall(PetscFree(aij->imax)); 479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &aij->imax)); 489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &aij->ilen)); 49cbc6b225SStefano Zampini for (ii = 0, aij->nonzerorowcnt = 0, aij->rmax = 0; ii < m; ii++) { 50cbc6b225SStefano Zampini const PetscInt rnz = i[ii + 1] - i[ii]; 51cbc6b225SStefano Zampini aij->nonzerorowcnt += !!rnz; 52cbc6b225SStefano Zampini aij->rmax = PetscMax(aij->rmax, rnz); 53cbc6b225SStefano Zampini aij->ilen[ii] = aij->imax[ii] = i[ii + 1] - i[ii]; 54cbc6b225SStefano Zampini } 55cbc6b225SStefano Zampini aij->maxnz = i[m]; 56cbc6b225SStefano Zampini aij->nz = i[m]; 574222ddf1SHong Zhang 58cbc6b225SStefano Zampini if (osingle) { 599566063dSJacob Faibussowitsch PetscCall(PetscFree3(aij->a, aij->j, aij->i)); 60cbc6b225SStefano Zampini } else { 619566063dSJacob Faibussowitsch if (ofree_a) PetscCall(PetscFree(aij->a)); 629566063dSJacob Faibussowitsch if (ofree_ij) PetscCall(PetscFree(aij->j)); 639566063dSJacob Faibussowitsch if (ofree_ij) PetscCall(PetscFree(aij->i)); 64cbc6b225SStefano Zampini } 654222ddf1SHong Zhang aij->i = i; 664222ddf1SHong Zhang aij->j = j; 674222ddf1SHong Zhang aij->a = a; 684222ddf1SHong Zhang aij->nonew = -1; /* this indicates that inserting a new value in the matrix that generates a new nonzero is an error */ 69cbc6b225SStefano Zampini /* default to not retain ownership */ 70cbc6b225SStefano Zampini aij->singlemalloc = PETSC_FALSE; 714222ddf1SHong Zhang aij->free_a = PETSC_FALSE; 724222ddf1SHong Zhang aij->free_ij = PETSC_FALSE; 739566063dSJacob Faibussowitsch PetscCall(MatCheckCompressedRow(mat, aij->nonzerorowcnt, &aij->compressedrow, aij->i, m, 0.6)); 746dc08606SJunchao Zhang // Always build the diag info when i, j are set 756dc08606SJunchao Zhang PetscCall(MatMarkDiagonal_SeqAIJ(mat)); 763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 775c66b693SKris Buschelman } 781c24bd37SHong Zhang 79d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C) 80d71ae5a4SJacob Faibussowitsch { 814222ddf1SHong Zhang Mat_Product *product = C->product; 824222ddf1SHong Zhang MatProductAlgorithm alg; 834222ddf1SHong Zhang PetscBool flg; 844222ddf1SHong Zhang 854222ddf1SHong Zhang PetscFunctionBegin; 864222ddf1SHong Zhang if (product) { 874222ddf1SHong Zhang alg = product->alg; 884222ddf1SHong Zhang } else { 894222ddf1SHong Zhang alg = "sorted"; 904222ddf1SHong Zhang } 914222ddf1SHong Zhang /* sorted */ 929566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "sorted", &flg)); 934222ddf1SHong Zhang if (flg) { 949566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(A, B, fill, C)); 953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 964222ddf1SHong Zhang } 974222ddf1SHong Zhang 984222ddf1SHong Zhang /* scalable */ 999566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable", &flg)); 1004222ddf1SHong Zhang if (flg) { 1019566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(A, B, fill, C)); 1023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1034222ddf1SHong Zhang } 1044222ddf1SHong Zhang 1054222ddf1SHong Zhang /* scalable_fast */ 1069566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "scalable_fast", &flg)); 1074222ddf1SHong Zhang if (flg) { 1089566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(A, B, fill, C)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1104222ddf1SHong Zhang } 1114222ddf1SHong Zhang 1124222ddf1SHong Zhang /* heap */ 1139566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "heap", &flg)); 1144222ddf1SHong Zhang if (flg) { 1159566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(A, B, fill, C)); 1163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1174222ddf1SHong Zhang } 1184222ddf1SHong Zhang 1194222ddf1SHong Zhang /* btheap */ 1209566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "btheap", &flg)); 1214222ddf1SHong Zhang if (flg) { 1229566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(A, B, fill, C)); 1233ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1244222ddf1SHong Zhang } 1254222ddf1SHong Zhang 1264222ddf1SHong Zhang /* llcondensed */ 1279566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "llcondensed", &flg)); 1284222ddf1SHong Zhang if (flg) { 1299566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(A, B, fill, C)); 1303ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1314222ddf1SHong Zhang } 1324222ddf1SHong Zhang 1334222ddf1SHong Zhang /* rowmerge */ 1349566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "rowmerge", &flg)); 1354222ddf1SHong Zhang if (flg) { 1369566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(A, B, fill, C)); 1373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1384222ddf1SHong Zhang } 1394222ddf1SHong Zhang 1404222ddf1SHong Zhang #if defined(PETSC_HAVE_HYPRE) 1419566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(alg, "hypre", &flg)); 1424222ddf1SHong Zhang if (flg) { 1439566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_AIJ_AIJ_wHYPRE(A, B, fill, C)); 1443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1454222ddf1SHong Zhang } 1464222ddf1SHong Zhang #endif 1474222ddf1SHong Zhang 1484222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 1494222ddf1SHong Zhang } 1504222ddf1SHong Zhang 151d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_LLCondensed(Mat A, Mat B, PetscReal fill, Mat C) 152d71ae5a4SJacob Faibussowitsch { 153b561aa9dSHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 154971236abSHong Zhang PetscInt *ai = a->i, *bi = b->i, *ci, *cj; 155c1ba5575SJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 156b561aa9dSHong Zhang PetscReal afill; 157eca6b86aSHong Zhang PetscInt i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax; 158eec179cfSJacob Faibussowitsch PetscHMapI ta; 159fb908031SHong Zhang PetscBT lnkbt; 1600298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 161b561aa9dSHong Zhang 162b561aa9dSHong Zhang PetscFunctionBegin; 163bd958071SHong Zhang /* Get ci and cj */ 164fb908031SHong Zhang /* Allocate ci array, arrays for fill computation and */ 165fb908031SHong Zhang /* free space for accumulating nonzero column info */ 1669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 167fb908031SHong Zhang ci[0] = 0; 168fb908031SHong Zhang 169fb908031SHong Zhang /* create and initialize a linked list */ 170eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(bn, &ta)); 171c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b, bm, ta); 172eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 173eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 174eca6b86aSHong Zhang 1759566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate(Crmax, bn, &lnk, &lnkbt)); 176fb908031SHong Zhang 177fb908031SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 1789566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 1792205254eSKarl Rupp 180fb908031SHong Zhang current_space = free_space; 181fb908031SHong Zhang 182fb908031SHong Zhang /* Determine ci and cj */ 183fb908031SHong Zhang for (i = 0; i < am; i++) { 184fb908031SHong Zhang anzi = ai[i + 1] - ai[i]; 185fb908031SHong Zhang aj = a->j + ai[i]; 186fb908031SHong Zhang for (j = 0; j < anzi; j++) { 187fb908031SHong Zhang brow = aj[j]; 188fb908031SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 189fb908031SHong Zhang bj = b->j + bi[brow]; 190fb908031SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 1919566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted(bnzj, bj, lnk, lnkbt)); 192fb908031SHong Zhang } 1938c78258cSHong Zhang /* add possible missing diagonal entry */ 19448a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted(1, &i, lnk, lnkbt)); 195fb908031SHong Zhang cnzi = lnk[0]; 196fb908031SHong Zhang 197fb908031SHong Zhang /* If free space is not available, make more free space */ 198fb908031SHong Zhang /* Double the amount of total space in the list */ 199fb908031SHong Zhang if (current_space->local_remaining < cnzi) { 2009566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), ¤t_space)); 201fb908031SHong Zhang ndouble++; 202fb908031SHong Zhang } 203fb908031SHong Zhang 204fb908031SHong Zhang /* Copy data into free space, then initialize lnk */ 2059566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean(bn, cnzi, current_space->array, lnk, lnkbt)); 2062205254eSKarl Rupp 207fb908031SHong Zhang current_space->array += cnzi; 208fb908031SHong Zhang current_space->local_used += cnzi; 209fb908031SHong Zhang current_space->local_remaining -= cnzi; 2102205254eSKarl Rupp 211fb908031SHong Zhang ci[i + 1] = ci[i] + cnzi; 212fb908031SHong Zhang } 213fb908031SHong Zhang 214fb908031SHong Zhang /* Column indices are in the list of free space */ 215fb908031SHong Zhang /* Allocate space for cj, initialize cj, and */ 216fb908031SHong Zhang /* destroy list of free space and other temporary array(s) */ 2179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am] + 1, &cj)); 2189566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 2199566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy(lnk, lnkbt)); 220b561aa9dSHong Zhang 22126be0446SHong Zhang /* put together the new symbolic matrix */ 2229566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 2239566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 22458c24d83SHong Zhang 22558c24d83SHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 22658c24d83SHong Zhang /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 227*f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 228aa1aec99SHong Zhang c->free_a = PETSC_FALSE; 229e6b907acSBarry Smith c->free_ij = PETSC_TRUE; 23058c24d83SHong Zhang c->nonew = 0; 2314222ddf1SHong Zhang 2324222ddf1SHong Zhang /* fast, needs non-scalable O(bn) array 'abdense' */ 2334222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 2340b7e3e3dSHong Zhang 2357212da7cSHong Zhang /* set MatInfo */ 2367212da7cSHong Zhang afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 237f2b054eeSHong Zhang if (afill < 1.0) afill = 1.0; 2384222ddf1SHong Zhang C->info.mallocs = ndouble; 2394222ddf1SHong Zhang C->info.fill_ratio_given = fill; 2404222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 2417212da7cSHong Zhang 2427212da7cSHong Zhang #if defined(PETSC_USE_INFO) 2437212da7cSHong Zhang if (ci[am]) { 2449566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 2459566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 246f2b054eeSHong Zhang } else { 2479566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 248be0fcf8dSHong Zhang } 249f2b054eeSHong Zhang #endif 2503ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25158c24d83SHong Zhang } 252d50806bdSBarry Smith 253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted(Mat A, Mat B, Mat C) 254d71ae5a4SJacob Faibussowitsch { 255d13dce4bSSatish Balay PetscLogDouble flops = 0.0; 256d50806bdSBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 257d50806bdSBarry Smith Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 258d50806bdSBarry Smith Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; 25938baddfdSBarry Smith PetscInt *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, *bjj, *ci = c->i, *cj = c->j; 260c58ca2e3SHong Zhang PetscInt am = A->rmap->n, cm = C->rmap->n; 261519eb980SHong Zhang PetscInt i, j, k, anzi, bnzi, cnzi, brow; 2622e5835c6SStefano Zampini PetscScalar *ca, valtmp; 263aa1aec99SHong Zhang PetscScalar *ab_dense; 2646718818eSStefano Zampini PetscContainer cab_dense; 2652e5835c6SStefano Zampini const PetscScalar *aa, *ba, *baj; 266d50806bdSBarry Smith 267d50806bdSBarry Smith PetscFunctionBegin; 2689566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &aa)); 2699566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &ba)); 270aa1aec99SHong Zhang if (!c->a) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */ 2719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[cm] + 1, &ca)); 272aa1aec99SHong Zhang c->a = ca; 273aa1aec99SHong Zhang c->free_a = PETSC_TRUE; 2746718818eSStefano Zampini } else ca = c->a; 2756718818eSStefano Zampini 2766718818eSStefano Zampini /* TODO this should be done in the symbolic phase */ 2776718818eSStefano Zampini /* However, this function is so heavily used (sometimes in an hidden way through multnumeric function pointers 2786718818eSStefano Zampini that is hard to eradicate) */ 2799566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)C, "__PETSc__ab_dense", (PetscObject *)&cab_dense)); 2806718818eSStefano Zampini if (!cab_dense) { 2819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(B->cmap->N, &ab_dense)); 2829566063dSJacob Faibussowitsch PetscCall(PetscContainerCreate(PETSC_COMM_SELF, &cab_dense)); 2839566063dSJacob Faibussowitsch PetscCall(PetscContainerSetPointer(cab_dense, ab_dense)); 2849566063dSJacob Faibussowitsch PetscCall(PetscContainerSetUserDestroy(cab_dense, PetscContainerUserDestroyDefault)); 2859566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)C, "__PETSc__ab_dense", (PetscObject)cab_dense)); 2869566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)cab_dense)); 287d90d86d0SMatthew G. Knepley } 2889566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(cab_dense, (void **)&ab_dense)); 2899566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ab_dense, B->cmap->N)); 290aa1aec99SHong Zhang 291c124e916SHong Zhang /* clean old values in C */ 2929566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm])); 293d50806bdSBarry Smith /* Traverse A row-wise. */ 294d50806bdSBarry Smith /* Build the ith row in C by summing over nonzero columns in A, */ 295d50806bdSBarry Smith /* the rows of B corresponding to nonzeros of A. */ 296d50806bdSBarry Smith for (i = 0; i < am; i++) { 297d50806bdSBarry Smith anzi = ai[i + 1] - ai[i]; 298d50806bdSBarry Smith for (j = 0; j < anzi; j++) { 299519eb980SHong Zhang brow = aj[j]; 300d50806bdSBarry Smith bnzi = bi[brow + 1] - bi[brow]; 301d50806bdSBarry Smith bjj = bj + bi[brow]; 302d50806bdSBarry Smith baj = ba + bi[brow]; 303519eb980SHong Zhang /* perform dense axpy */ 30436ec6d2dSHong Zhang valtmp = aa[j]; 305ad540459SPierre Jolivet for (k = 0; k < bnzi; k++) ab_dense[bjj[k]] += valtmp * baj[k]; 306519eb980SHong Zhang flops += 2 * bnzi; 307519eb980SHong Zhang } 3088e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(aj, anzi); 3098e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(aa, anzi); 310c58ca2e3SHong Zhang 311c58ca2e3SHong Zhang cnzi = ci[i + 1] - ci[i]; 312519eb980SHong Zhang for (k = 0; k < cnzi; k++) { 313519eb980SHong Zhang ca[k] += ab_dense[cj[k]]; 314519eb980SHong Zhang ab_dense[cj[k]] = 0.0; /* zero ab_dense */ 315519eb980SHong Zhang } 316519eb980SHong Zhang flops += cnzi; 3178e3a54c0SPierre Jolivet cj = PetscSafePointerPlusOffset(cj, cnzi); 3189371c9d4SSatish Balay ca += cnzi; 319519eb980SHong Zhang } 3202e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 3212e5835c6SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 3222e5835c6SStefano Zampini #endif 3239566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3249566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3259566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 3269566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &aa)); 3279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 329c58ca2e3SHong Zhang } 330c58ca2e3SHong Zhang 331d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable(Mat A, Mat B, Mat C) 332d71ae5a4SJacob Faibussowitsch { 333c58ca2e3SHong Zhang PetscLogDouble flops = 0.0; 334c58ca2e3SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 335c58ca2e3SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 336c58ca2e3SHong Zhang Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; 337c58ca2e3SHong Zhang PetscInt *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, *bjj, *ci = c->i, *cj = c->j; 338c58ca2e3SHong Zhang PetscInt am = A->rmap->N, cm = C->rmap->N; 339c58ca2e3SHong Zhang PetscInt i, j, k, anzi, bnzi, cnzi, brow; 3402e5835c6SStefano Zampini PetscScalar *ca = c->a, valtmp; 3412e5835c6SStefano Zampini const PetscScalar *aa, *ba, *baj; 342c58ca2e3SHong Zhang PetscInt nextb; 343c58ca2e3SHong Zhang 344c58ca2e3SHong Zhang PetscFunctionBegin; 3459566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &aa)); 3469566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(B, &ba)); 347cf742fccSHong Zhang if (!ca) { /* first call of MatMatMultNumeric_SeqAIJ_SeqAIJ, allocate ca and matmult_abdense */ 3489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[cm] + 1, &ca)); 349cf742fccSHong Zhang c->a = ca; 350cf742fccSHong Zhang c->free_a = PETSC_TRUE; 351cf742fccSHong Zhang } 352cf742fccSHong Zhang 353c58ca2e3SHong Zhang /* clean old values in C */ 3549566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm])); 355c58ca2e3SHong Zhang /* Traverse A row-wise. */ 356c58ca2e3SHong Zhang /* Build the ith row in C by summing over nonzero columns in A, */ 357c58ca2e3SHong Zhang /* the rows of B corresponding to nonzeros of A. */ 358519eb980SHong Zhang for (i = 0; i < am; i++) { 359519eb980SHong Zhang anzi = ai[i + 1] - ai[i]; 360519eb980SHong Zhang cnzi = ci[i + 1] - ci[i]; 361519eb980SHong Zhang for (j = 0; j < anzi; j++) { 362519eb980SHong Zhang brow = aj[j]; 363519eb980SHong Zhang bnzi = bi[brow + 1] - bi[brow]; 364519eb980SHong Zhang bjj = bj + bi[brow]; 365519eb980SHong Zhang baj = ba + bi[brow]; 366519eb980SHong Zhang /* perform sparse axpy */ 36736ec6d2dSHong Zhang valtmp = aa[j]; 368c124e916SHong Zhang nextb = 0; 369c124e916SHong Zhang for (k = 0; nextb < bnzi; k++) { 370c124e916SHong Zhang if (cj[k] == bjj[nextb]) { /* ccol == bcol */ 37136ec6d2dSHong Zhang ca[k] += valtmp * baj[nextb++]; 372c124e916SHong Zhang } 373d50806bdSBarry Smith } 374d50806bdSBarry Smith flops += 2 * bnzi; 375d50806bdSBarry Smith } 3769371c9d4SSatish Balay aj += anzi; 3779371c9d4SSatish Balay aa += anzi; 3789371c9d4SSatish Balay cj += cnzi; 3799371c9d4SSatish Balay ca += cnzi; 380d50806bdSBarry Smith } 3812e5835c6SStefano Zampini #if defined(PETSC_HAVE_DEVICE) 3822e5835c6SStefano Zampini if (C->offloadmask != PETSC_OFFLOAD_UNALLOCATED) C->offloadmask = PETSC_OFFLOAD_CPU; 3832e5835c6SStefano Zampini #endif 3849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 3859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 3869566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 3879566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &aa)); 3889566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(B, &ba)); 3893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 390d50806bdSBarry Smith } 391bc011b1eSHong Zhang 392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable_fast(Mat A, Mat B, PetscReal fill, Mat C) 393d71ae5a4SJacob Faibussowitsch { 39425296bd5SBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 39525296bd5SBarry Smith PetscInt *ai = a->i, *bi = b->i, *ci, *cj; 3963c50cad2SHong Zhang PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 39725296bd5SBarry Smith MatScalar *ca; 39825296bd5SBarry Smith PetscReal afill; 399eca6b86aSHong Zhang PetscInt i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax; 400eec179cfSJacob Faibussowitsch PetscHMapI ta; 4010298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 40225296bd5SBarry Smith 40325296bd5SBarry Smith PetscFunctionBegin; 4043c50cad2SHong Zhang /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_fast() */ 4053c50cad2SHong Zhang /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 4069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 4073c50cad2SHong Zhang ci[0] = 0; 4083c50cad2SHong Zhang 4093c50cad2SHong Zhang /* create and initialize a linked list */ 410eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(bn, &ta)); 411c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b, bm, ta); 412eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 413eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 414eca6b86aSHong Zhang 4159566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_fast(Crmax, &lnk)); 4163c50cad2SHong Zhang 4173c50cad2SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 4189566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 4193c50cad2SHong Zhang current_space = free_space; 4203c50cad2SHong Zhang 4213c50cad2SHong Zhang /* Determine ci and cj */ 4223c50cad2SHong Zhang for (i = 0; i < am; i++) { 4233c50cad2SHong Zhang anzi = ai[i + 1] - ai[i]; 4243c50cad2SHong Zhang aj = a->j + ai[i]; 4253c50cad2SHong Zhang for (j = 0; j < anzi; j++) { 4263c50cad2SHong Zhang brow = aj[j]; 4273c50cad2SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 4283c50cad2SHong Zhang bj = b->j + bi[brow]; 4293c50cad2SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 4309566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_fast(bnzj, bj, lnk)); 4313c50cad2SHong Zhang } 4328c78258cSHong Zhang /* add possible missing diagonal entry */ 43348a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted_fast(1, &i, lnk)); 4343c50cad2SHong Zhang cnzi = lnk[1]; 4353c50cad2SHong Zhang 4363c50cad2SHong Zhang /* If free space is not available, make more free space */ 4373c50cad2SHong Zhang /* Double the amount of total space in the list */ 4383c50cad2SHong Zhang if (current_space->local_remaining < cnzi) { 4399566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), ¤t_space)); 4403c50cad2SHong Zhang ndouble++; 4413c50cad2SHong Zhang } 4423c50cad2SHong Zhang 4433c50cad2SHong Zhang /* Copy data into free space, then initialize lnk */ 4449566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_fast(cnzi, current_space->array, lnk)); 4452205254eSKarl Rupp 4463c50cad2SHong Zhang current_space->array += cnzi; 4473c50cad2SHong Zhang current_space->local_used += cnzi; 4483c50cad2SHong Zhang current_space->local_remaining -= cnzi; 4492205254eSKarl Rupp 4503c50cad2SHong Zhang ci[i + 1] = ci[i] + cnzi; 4513c50cad2SHong Zhang } 4523c50cad2SHong Zhang 4533c50cad2SHong Zhang /* Column indices are in the list of free space */ 4543c50cad2SHong Zhang /* Allocate space for cj, initialize cj, and */ 4553c50cad2SHong Zhang /* destroy list of free space and other temporary array(s) */ 4569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am] + 1, &cj)); 4579566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 4589566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_fast(lnk)); 45925296bd5SBarry Smith 46025296bd5SBarry Smith /* Allocate space for ca */ 4619566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[am] + 1, &ca)); 46225296bd5SBarry Smith 46325296bd5SBarry Smith /* put together the new symbolic matrix */ 4649566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, ca, ((PetscObject)A)->type_name, C)); 4659566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 46625296bd5SBarry Smith 46725296bd5SBarry Smith /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 46825296bd5SBarry Smith /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 469*f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 47025296bd5SBarry Smith c->free_a = PETSC_TRUE; 47125296bd5SBarry Smith c->free_ij = PETSC_TRUE; 47225296bd5SBarry Smith c->nonew = 0; 4732205254eSKarl Rupp 4744222ddf1SHong Zhang /* slower, less memory */ 4754222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable; 47625296bd5SBarry Smith 47725296bd5SBarry Smith /* set MatInfo */ 47825296bd5SBarry Smith afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 47925296bd5SBarry Smith if (afill < 1.0) afill = 1.0; 4804222ddf1SHong Zhang C->info.mallocs = ndouble; 4814222ddf1SHong Zhang C->info.fill_ratio_given = fill; 4824222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 48325296bd5SBarry Smith 48425296bd5SBarry Smith #if defined(PETSC_USE_INFO) 48525296bd5SBarry Smith if (ci[am]) { 4869566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 4879566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 48825296bd5SBarry Smith } else { 4899566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 49025296bd5SBarry Smith } 49125296bd5SBarry Smith #endif 4923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 49325296bd5SBarry Smith } 49425296bd5SBarry Smith 495d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Scalable(Mat A, Mat B, PetscReal fill, Mat C) 496d71ae5a4SJacob Faibussowitsch { 497e9e4536cSHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 498bf9555e6SHong Zhang PetscInt *ai = a->i, *bi = b->i, *ci, *cj; 49925c41797SHong Zhang PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 500e9e4536cSHong Zhang MatScalar *ca; 501e9e4536cSHong Zhang PetscReal afill; 502eca6b86aSHong Zhang PetscInt i, j, anzi, brow, bnzj, cnzi, *bj, *aj, *lnk, ndouble = 0, Crmax; 503eec179cfSJacob Faibussowitsch PetscHMapI ta; 5040298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 505e9e4536cSHong Zhang 506e9e4536cSHong Zhang PetscFunctionBegin; 507bd958071SHong Zhang /* Get ci and cj - same as MatMatMultSymbolic_SeqAIJ_SeqAIJ except using PetscLLxxx_Scalalbe() */ 508bd958071SHong Zhang /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 5099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 510bd958071SHong Zhang ci[0] = 0; 511bd958071SHong Zhang 512bd958071SHong Zhang /* create and initialize a linked list */ 513eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(bn, &ta)); 514c373ccc6SHong Zhang MatRowMergeMax_SeqAIJ(b, bm, ta); 515eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(ta, &Crmax)); 516eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&ta)); 5179566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedCreate_Scalable(Crmax, &lnk)); 518bd958071SHong Zhang 519bd958071SHong Zhang /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 5209566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 521bd958071SHong Zhang current_space = free_space; 522bd958071SHong Zhang 523bd958071SHong Zhang /* Determine ci and cj */ 524bd958071SHong Zhang for (i = 0; i < am; i++) { 525bd958071SHong Zhang anzi = ai[i + 1] - ai[i]; 526bd958071SHong Zhang aj = a->j + ai[i]; 527bd958071SHong Zhang for (j = 0; j < anzi; j++) { 528bd958071SHong Zhang brow = aj[j]; 529bd958071SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 530bd958071SHong Zhang bj = b->j + bi[brow]; 531bd958071SHong Zhang /* add non-zero cols of B into the sorted linked list lnk */ 5329566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedAddSorted_Scalable(bnzj, bj, lnk)); 533bd958071SHong Zhang } 5348c78258cSHong Zhang /* add possible missing diagonal entry */ 53548a46eb9SPierre Jolivet if (C->force_diagonals) PetscCall(PetscLLCondensedAddSorted_Scalable(1, &i, lnk)); 5368c78258cSHong Zhang 537bd958071SHong Zhang cnzi = lnk[0]; 538bd958071SHong Zhang 539bd958071SHong Zhang /* If free space is not available, make more free space */ 540bd958071SHong Zhang /* Double the amount of total space in the list */ 541bd958071SHong Zhang if (current_space->local_remaining < cnzi) { 5429566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscIntSumTruncate(cnzi, current_space->total_array_size), ¤t_space)); 543bd958071SHong Zhang ndouble++; 544bd958071SHong Zhang } 545bd958071SHong Zhang 546bd958071SHong Zhang /* Copy data into free space, then initialize lnk */ 5479566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedClean_Scalable(cnzi, current_space->array, lnk)); 5482205254eSKarl Rupp 549bd958071SHong Zhang current_space->array += cnzi; 550bd958071SHong Zhang current_space->local_used += cnzi; 551bd958071SHong Zhang current_space->local_remaining -= cnzi; 5522205254eSKarl Rupp 553bd958071SHong Zhang ci[i + 1] = ci[i] + cnzi; 554bd958071SHong Zhang } 555bd958071SHong Zhang 556bd958071SHong Zhang /* Column indices are in the list of free space */ 557bd958071SHong Zhang /* Allocate space for cj, initialize cj, and */ 558bd958071SHong Zhang /* destroy list of free space and other temporary array(s) */ 5599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am] + 1, &cj)); 5609566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 5619566063dSJacob Faibussowitsch PetscCall(PetscLLCondensedDestroy_Scalable(lnk)); 562e9e4536cSHong Zhang 563e9e4536cSHong Zhang /* Allocate space for ca */ 5649566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[am] + 1, &ca)); 565e9e4536cSHong Zhang 566e9e4536cSHong Zhang /* put together the new symbolic matrix */ 5679566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, ca, ((PetscObject)A)->type_name, C)); 5689566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 569e9e4536cSHong Zhang 570e9e4536cSHong Zhang /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 571e9e4536cSHong Zhang /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 572*f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 573e9e4536cSHong Zhang c->free_a = PETSC_TRUE; 574e9e4536cSHong Zhang c->free_ij = PETSC_TRUE; 575e9e4536cSHong Zhang c->nonew = 0; 5762205254eSKarl Rupp 5774222ddf1SHong Zhang /* slower, less memory */ 5784222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Scalable; 579e9e4536cSHong Zhang 580e9e4536cSHong Zhang /* set MatInfo */ 581e9e4536cSHong Zhang afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 582e9e4536cSHong Zhang if (afill < 1.0) afill = 1.0; 5834222ddf1SHong Zhang C->info.mallocs = ndouble; 5844222ddf1SHong Zhang C->info.fill_ratio_given = fill; 5854222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 586e9e4536cSHong Zhang 587e9e4536cSHong Zhang #if defined(PETSC_USE_INFO) 588e9e4536cSHong Zhang if (ci[am]) { 5899566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 5909566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 591e9e4536cSHong Zhang } else { 5929566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 593e9e4536cSHong Zhang } 594e9e4536cSHong Zhang #endif 5953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 596e9e4536cSHong Zhang } 597e9e4536cSHong Zhang 598d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Heap(Mat A, Mat B, PetscReal fill, Mat C) 599d71ae5a4SJacob Faibussowitsch { 6000ced3a2bSJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 6010ced3a2bSJed Brown const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j; 6020ced3a2bSJed Brown PetscInt *ci, *cj, *bb; 6030ced3a2bSJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 6040ced3a2bSJed Brown PetscReal afill; 6050ced3a2bSJed Brown PetscInt i, j, col, ndouble = 0; 6060298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 6070ced3a2bSJed Brown PetscHeap h; 6080ced3a2bSJed Brown 6090ced3a2bSJed Brown PetscFunctionBegin; 610cd093f1dSJed Brown /* Get ci and cj - by merging sorted rows using a heap */ 6110ced3a2bSJed Brown /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 6129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 6130ced3a2bSJed Brown ci[0] = 0; 6140ced3a2bSJed Brown 6150ced3a2bSJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 6169566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 6170ced3a2bSJed Brown current_space = free_space; 6180ced3a2bSJed Brown 6199566063dSJacob Faibussowitsch PetscCall(PetscHeapCreate(a->rmax, &h)); 6209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->rmax, &bb)); 6210ced3a2bSJed Brown 6220ced3a2bSJed Brown /* Determine ci and cj */ 6230ced3a2bSJed Brown for (i = 0; i < am; i++) { 6240ced3a2bSJed Brown const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 6250ced3a2bSJed Brown const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 6260ced3a2bSJed Brown ci[i + 1] = ci[i]; 6270ced3a2bSJed Brown /* Populate the min heap */ 6280ced3a2bSJed Brown for (j = 0; j < anzi; j++) { 6290ced3a2bSJed Brown bb[j] = bi[acol[j]]; /* bb points at the start of the row */ 6300ced3a2bSJed Brown if (bb[j] < bi[acol[j] + 1]) { /* Add if row is nonempty */ 6319566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h, j, bj[bb[j]++])); 6320ced3a2bSJed Brown } 6330ced3a2bSJed Brown } 6340ced3a2bSJed Brown /* Pick off the min element, adding it to free space */ 6359566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 6360ced3a2bSJed Brown while (j >= 0) { 6370ced3a2bSJed Brown if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */ 6389566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2, current_space->total_array_size), 16 << 20), ¤t_space)); 6390ced3a2bSJed Brown ndouble++; 6400ced3a2bSJed Brown } 6410ced3a2bSJed Brown *(current_space->array++) = col; 6420ced3a2bSJed Brown current_space->local_used++; 6430ced3a2bSJed Brown current_space->local_remaining--; 6440ced3a2bSJed Brown ci[i + 1]++; 6450ced3a2bSJed Brown 6460ced3a2bSJed Brown /* stash if anything else remains in this row of B */ 6479566063dSJacob Faibussowitsch if (bb[j] < bi[acol[j] + 1]) PetscCall(PetscHeapStash(h, j, bj[bb[j]++])); 6480ced3a2bSJed Brown while (1) { /* pop and stash any other rows of B that also had an entry in this column */ 6490ced3a2bSJed Brown PetscInt j2, col2; 6509566063dSJacob Faibussowitsch PetscCall(PetscHeapPeek(h, &j2, &col2)); 6510ced3a2bSJed Brown if (col2 != col) break; 6529566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j2, &col2)); 6539566063dSJacob Faibussowitsch if (bb[j2] < bi[acol[j2] + 1]) PetscCall(PetscHeapStash(h, j2, bj[bb[j2]++])); 6540ced3a2bSJed Brown } 6550ced3a2bSJed Brown /* Put any stashed elements back into the min heap */ 6569566063dSJacob Faibussowitsch PetscCall(PetscHeapUnstash(h)); 6579566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 6580ced3a2bSJed Brown } 6590ced3a2bSJed Brown } 6609566063dSJacob Faibussowitsch PetscCall(PetscFree(bb)); 6619566063dSJacob Faibussowitsch PetscCall(PetscHeapDestroy(&h)); 6620ced3a2bSJed Brown 6630ced3a2bSJed Brown /* Column indices are in the list of free space */ 6640ced3a2bSJed Brown /* Allocate space for cj, initialize cj, and */ 6650ced3a2bSJed Brown /* destroy list of free space and other temporary array(s) */ 6669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am], &cj)); 6679566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 6680ced3a2bSJed Brown 6690ced3a2bSJed Brown /* put together the new symbolic matrix */ 6709566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 6719566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 6720ced3a2bSJed Brown 6730ced3a2bSJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 6740ced3a2bSJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 675*f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 6760ced3a2bSJed Brown c->free_a = PETSC_TRUE; 6770ced3a2bSJed Brown c->free_ij = PETSC_TRUE; 6780ced3a2bSJed Brown c->nonew = 0; 67926fbe8dcSKarl Rupp 6804222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 6810ced3a2bSJed Brown 6820ced3a2bSJed Brown /* set MatInfo */ 6830ced3a2bSJed Brown afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 6840ced3a2bSJed Brown if (afill < 1.0) afill = 1.0; 6854222ddf1SHong Zhang C->info.mallocs = ndouble; 6864222ddf1SHong Zhang C->info.fill_ratio_given = fill; 6874222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 6880ced3a2bSJed Brown 6890ced3a2bSJed Brown #if defined(PETSC_USE_INFO) 6900ced3a2bSJed Brown if (ci[am]) { 6919566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 6929566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 6930ced3a2bSJed Brown } else { 6949566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 6950ced3a2bSJed Brown } 6960ced3a2bSJed Brown #endif 6973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6980ced3a2bSJed Brown } 699e9e4536cSHong Zhang 700d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_BTHeap(Mat A, Mat B, PetscReal fill, Mat C) 701d71ae5a4SJacob Faibussowitsch { 7028a07c6f1SJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 7038a07c6f1SJed Brown const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j; 7048a07c6f1SJed Brown PetscInt *ci, *cj, *bb; 7058a07c6f1SJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 7068a07c6f1SJed Brown PetscReal afill; 7078a07c6f1SJed Brown PetscInt i, j, col, ndouble = 0; 7080298fd71SBarry Smith PetscFreeSpaceList free_space = NULL, current_space = NULL; 7098a07c6f1SJed Brown PetscHeap h; 7108a07c6f1SJed Brown PetscBT bt; 7118a07c6f1SJed Brown 7128a07c6f1SJed Brown PetscFunctionBegin; 713cd093f1dSJed Brown /* Get ci and cj - using a heap for the sorted rows, but use BT so that each index is only added once */ 7148a07c6f1SJed Brown /* Allocate arrays for fill computation and free space for accumulating nonzero column */ 7159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 2, &ci)); 7168a07c6f1SJed Brown ci[0] = 0; 7178a07c6f1SJed Brown 7188a07c6f1SJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 7199566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscRealIntMultTruncate(fill, PetscIntSumTruncate(ai[am], bi[bm])), &free_space)); 7202205254eSKarl Rupp 7218a07c6f1SJed Brown current_space = free_space; 7228a07c6f1SJed Brown 7239566063dSJacob Faibussowitsch PetscCall(PetscHeapCreate(a->rmax, &h)); 7249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->rmax, &bb)); 7259566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(bn, &bt)); 7268a07c6f1SJed Brown 7278a07c6f1SJed Brown /* Determine ci and cj */ 7288a07c6f1SJed Brown for (i = 0; i < am; i++) { 7298a07c6f1SJed Brown const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 7308a07c6f1SJed Brown const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 7318a07c6f1SJed Brown const PetscInt *fptr = current_space->array; /* Save beginning of the row so we can clear the BT later */ 7328a07c6f1SJed Brown ci[i + 1] = ci[i]; 7338a07c6f1SJed Brown /* Populate the min heap */ 7348a07c6f1SJed Brown for (j = 0; j < anzi; j++) { 7358a07c6f1SJed Brown PetscInt brow = acol[j]; 7368a07c6f1SJed Brown for (bb[j] = bi[brow]; bb[j] < bi[brow + 1]; bb[j]++) { 7378a07c6f1SJed Brown PetscInt bcol = bj[bb[j]]; 7388a07c6f1SJed Brown if (!PetscBTLookupSet(bt, bcol)) { /* new entry */ 7399566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h, j, bcol)); 7408a07c6f1SJed Brown bb[j]++; 7418a07c6f1SJed Brown break; 7428a07c6f1SJed Brown } 7438a07c6f1SJed Brown } 7448a07c6f1SJed Brown } 7458a07c6f1SJed Brown /* Pick off the min element, adding it to free space */ 7469566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 7478a07c6f1SJed Brown while (j >= 0) { 7488a07c6f1SJed Brown if (current_space->local_remaining < 1) { /* double the size, but don't exceed 16 MiB */ 7490298fd71SBarry Smith fptr = NULL; /* need PetscBTMemzero */ 7509566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceGet(PetscMin(PetscIntMultTruncate(2, current_space->total_array_size), 16 << 20), ¤t_space)); 7518a07c6f1SJed Brown ndouble++; 7528a07c6f1SJed Brown } 7538a07c6f1SJed Brown *(current_space->array++) = col; 7548a07c6f1SJed Brown current_space->local_used++; 7558a07c6f1SJed Brown current_space->local_remaining--; 7568a07c6f1SJed Brown ci[i + 1]++; 7578a07c6f1SJed Brown 7588a07c6f1SJed Brown /* stash if anything else remains in this row of B */ 7598a07c6f1SJed Brown for (; bb[j] < bi[acol[j] + 1]; bb[j]++) { 7608a07c6f1SJed Brown PetscInt bcol = bj[bb[j]]; 7618a07c6f1SJed Brown if (!PetscBTLookupSet(bt, bcol)) { /* new entry */ 7629566063dSJacob Faibussowitsch PetscCall(PetscHeapAdd(h, j, bcol)); 7638a07c6f1SJed Brown bb[j]++; 7648a07c6f1SJed Brown break; 7658a07c6f1SJed Brown } 7668a07c6f1SJed Brown } 7679566063dSJacob Faibussowitsch PetscCall(PetscHeapPop(h, &j, &col)); 7688a07c6f1SJed Brown } 7698a07c6f1SJed Brown if (fptr) { /* Clear the bits for this row */ 7709566063dSJacob Faibussowitsch for (; fptr < current_space->array; fptr++) PetscCall(PetscBTClear(bt, *fptr)); 7718a07c6f1SJed Brown } else { /* We reallocated so we don't remember (easily) how to clear only the bits we changed */ 7729566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(bn, bt)); 7738a07c6f1SJed Brown } 7748a07c6f1SJed Brown } 7759566063dSJacob Faibussowitsch PetscCall(PetscFree(bb)); 7769566063dSJacob Faibussowitsch PetscCall(PetscHeapDestroy(&h)); 7779566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 7788a07c6f1SJed Brown 7798a07c6f1SJed Brown /* Column indices are in the list of free space */ 7808a07c6f1SJed Brown /* Allocate space for cj, initialize cj, and */ 7818a07c6f1SJed Brown /* destroy list of free space and other temporary array(s) */ 7829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ci[am], &cj)); 7839566063dSJacob Faibussowitsch PetscCall(PetscFreeSpaceContiguous(&free_space, cj)); 7848a07c6f1SJed Brown 7858a07c6f1SJed Brown /* put together the new symbolic matrix */ 7869566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 7879566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 7888a07c6f1SJed Brown 7898a07c6f1SJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 7908a07c6f1SJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 791*f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 7928a07c6f1SJed Brown c->free_a = PETSC_TRUE; 7938a07c6f1SJed Brown c->free_ij = PETSC_TRUE; 7948a07c6f1SJed Brown c->nonew = 0; 79526fbe8dcSKarl Rupp 7964222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 7978a07c6f1SJed Brown 7988a07c6f1SJed Brown /* set MatInfo */ 7998a07c6f1SJed Brown afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 8008a07c6f1SJed Brown if (afill < 1.0) afill = 1.0; 8014222ddf1SHong Zhang C->info.mallocs = ndouble; 8024222ddf1SHong Zhang C->info.fill_ratio_given = fill; 8034222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 8048a07c6f1SJed Brown 8058a07c6f1SJed Brown #if defined(PETSC_USE_INFO) 8068a07c6f1SJed Brown if (ci[am]) { 8079566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 8089566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 8098a07c6f1SJed Brown } else { 8109566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 8118a07c6f1SJed Brown } 8128a07c6f1SJed Brown #endif 8133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 8148a07c6f1SJed Brown } 8158a07c6f1SJed Brown 816d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_RowMerge(Mat A, Mat B, PetscReal fill, Mat C) 817d71ae5a4SJacob Faibussowitsch { 818d7ed1a4dSandi selinger Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 819d7ed1a4dSandi selinger const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j, *inputi, *inputj, *inputcol, *inputcol_L1; 820d7ed1a4dSandi selinger PetscInt *ci, *cj, *outputj, worki_L1[9], worki_L2[9]; 821d7ed1a4dSandi selinger PetscInt c_maxmem, a_maxrownnz = 0, a_rownnz; 822d7ed1a4dSandi selinger const PetscInt workcol[8] = {0, 1, 2, 3, 4, 5, 6, 7}; 823d7ed1a4dSandi selinger const PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 824d7ed1a4dSandi selinger const PetscInt *brow_ptr[8], *brow_end[8]; 825d7ed1a4dSandi selinger PetscInt window[8]; 826d7ed1a4dSandi selinger PetscInt window_min, old_window_min, ci_nnz, outputi_nnz = 0, L1_nrows, L2_nrows; 827d7ed1a4dSandi selinger PetscInt i, k, ndouble = 0, L1_rowsleft, rowsleft; 828d7ed1a4dSandi selinger PetscReal afill; 829f83700f2Sandi selinger PetscInt *workj_L1, *workj_L2, *workj_L3; 8307660c4dbSandi selinger PetscInt L1_nnz, L2_nnz; 831d7ed1a4dSandi selinger 832d7ed1a4dSandi selinger /* Step 1: Get upper bound on memory required for allocation. 833d7ed1a4dSandi selinger Because of the way virtual memory works, 834d7ed1a4dSandi selinger only the memory pages that are actually needed will be physically allocated. */ 835d7ed1a4dSandi selinger PetscFunctionBegin; 8369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 1, &ci)); 837d7ed1a4dSandi selinger for (i = 0; i < am; i++) { 838d7ed1a4dSandi selinger const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 839d7ed1a4dSandi selinger const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 840d7ed1a4dSandi selinger a_rownnz = 0; 841d7ed1a4dSandi selinger for (k = 0; k < anzi; ++k) { 842d7ed1a4dSandi selinger a_rownnz += bi[acol[k] + 1] - bi[acol[k]]; 843d7ed1a4dSandi selinger if (a_rownnz > bn) { 844d7ed1a4dSandi selinger a_rownnz = bn; 845d7ed1a4dSandi selinger break; 846d7ed1a4dSandi selinger } 847d7ed1a4dSandi selinger } 848d7ed1a4dSandi selinger a_maxrownnz = PetscMax(a_maxrownnz, a_rownnz); 849d7ed1a4dSandi selinger } 850d7ed1a4dSandi selinger /* temporary work areas for merging rows */ 8519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz * 8, &workj_L1)); 8529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz * 8, &workj_L2)); 8539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a_maxrownnz, &workj_L3)); 854d7ed1a4dSandi selinger 8557660c4dbSandi selinger /* This should be enough for almost all matrices. If not, memory is reallocated later. */ 8567660c4dbSandi selinger c_maxmem = 8 * (ai[am] + bi[bm]); 857d7ed1a4dSandi selinger /* Step 2: Populate pattern for C */ 8589566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(c_maxmem, &cj)); 859d7ed1a4dSandi selinger 860d7ed1a4dSandi selinger ci_nnz = 0; 861d7ed1a4dSandi selinger ci[0] = 0; 862d7ed1a4dSandi selinger worki_L1[0] = 0; 863d7ed1a4dSandi selinger worki_L2[0] = 0; 864d7ed1a4dSandi selinger for (i = 0; i < am; i++) { 865d7ed1a4dSandi selinger const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 866d7ed1a4dSandi selinger const PetscInt *acol = aj + ai[i]; /* column indices of nonzero entries in this row */ 867d7ed1a4dSandi selinger rowsleft = anzi; 868d7ed1a4dSandi selinger inputcol_L1 = acol; 869d7ed1a4dSandi selinger L2_nnz = 0; 8707660c4dbSandi selinger L2_nrows = 1; /* Number of rows to be merged on Level 3. output of L3 already exists -> initial value 1 */ 8717660c4dbSandi selinger worki_L2[1] = 0; 87208fe1b3cSKarl Rupp outputi_nnz = 0; 873d7ed1a4dSandi selinger 874d7ed1a4dSandi selinger /* If the number of indices in C so far + the max number of columns in the next row > c_maxmem -> allocate more memory */ 875d7ed1a4dSandi selinger while (ci_nnz + a_maxrownnz > c_maxmem) { 876d7ed1a4dSandi selinger c_maxmem *= 2; 877d7ed1a4dSandi selinger ndouble++; 8789566063dSJacob Faibussowitsch PetscCall(PetscRealloc(sizeof(PetscInt) * c_maxmem, &cj)); 879d7ed1a4dSandi selinger } 880d7ed1a4dSandi selinger 881d7ed1a4dSandi selinger while (rowsleft) { 882d7ed1a4dSandi selinger L1_rowsleft = PetscMin(64, rowsleft); /* In the inner loop max 64 rows of B can be merged */ 883d7ed1a4dSandi selinger L1_nrows = 0; 8847660c4dbSandi selinger L1_nnz = 0; 885d7ed1a4dSandi selinger inputcol = inputcol_L1; 886d7ed1a4dSandi selinger inputi = bi; 887d7ed1a4dSandi selinger inputj = bj; 888d7ed1a4dSandi selinger 889d7ed1a4dSandi selinger /* The following macro is used to specialize for small rows in A. 890d7ed1a4dSandi selinger This helps with compiler unrolling, improving performance substantially. 891f83700f2Sandi selinger Input: inputj inputi inputcol bn 892d7ed1a4dSandi selinger Output: outputj outputi_nnz */ 893d7ed1a4dSandi selinger #define MatMatMultSymbolic_RowMergeMacro(ANNZ) \ 894a8f51744SPierre Jolivet do { \ 895d7ed1a4dSandi selinger window_min = bn; \ 8967660c4dbSandi selinger outputi_nnz = 0; \ 8977660c4dbSandi selinger for (k = 0; k < ANNZ; ++k) { \ 898d7ed1a4dSandi selinger brow_ptr[k] = inputj + inputi[inputcol[k]]; \ 899d7ed1a4dSandi selinger brow_end[k] = inputj + inputi[inputcol[k] + 1]; \ 900d7ed1a4dSandi selinger window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \ 901d7ed1a4dSandi selinger window_min = PetscMin(window[k], window_min); \ 902d7ed1a4dSandi selinger } \ 903d7ed1a4dSandi selinger while (window_min < bn) { \ 904d7ed1a4dSandi selinger outputj[outputi_nnz++] = window_min; \ 905d7ed1a4dSandi selinger /* advance front and compute new minimum */ \ 906d7ed1a4dSandi selinger old_window_min = window_min; \ 907d7ed1a4dSandi selinger window_min = bn; \ 908d7ed1a4dSandi selinger for (k = 0; k < ANNZ; ++k) { \ 909d7ed1a4dSandi selinger if (window[k] == old_window_min) { \ 910d7ed1a4dSandi selinger brow_ptr[k]++; \ 911d7ed1a4dSandi selinger window[k] = (brow_ptr[k] != brow_end[k]) ? *brow_ptr[k] : bn; \ 912d7ed1a4dSandi selinger } \ 913d7ed1a4dSandi selinger window_min = PetscMin(window[k], window_min); \ 914d7ed1a4dSandi selinger } \ 915a8f51744SPierre Jolivet } \ 916a8f51744SPierre Jolivet } while (0) 917d7ed1a4dSandi selinger 918d7ed1a4dSandi selinger /************** L E V E L 1 ***************/ 919d7ed1a4dSandi selinger /* Merge up to 8 rows of B to L1 work array*/ 920d7ed1a4dSandi selinger while (L1_rowsleft) { 9217660c4dbSandi selinger outputi_nnz = 0; 9227660c4dbSandi selinger if (anzi > 8) outputj = workj_L1 + L1_nnz; /* Level 1 rowmerge*/ 9237660c4dbSandi selinger else outputj = cj + ci_nnz; /* Merge directly to C */ 9247660c4dbSandi selinger 925d7ed1a4dSandi selinger switch (L1_rowsleft) { 9269371c9d4SSatish Balay case 1: 9279371c9d4SSatish Balay brow_ptr[0] = inputj + inputi[inputcol[0]]; 928d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0] + 1]; 929d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 930d7ed1a4dSandi selinger inputcol += L1_rowsleft; 931d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 932d7ed1a4dSandi selinger L1_rowsleft = 0; 933d7ed1a4dSandi selinger break; 9349371c9d4SSatish Balay case 2: 9359371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(2); 936d7ed1a4dSandi selinger inputcol += L1_rowsleft; 937d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 938d7ed1a4dSandi selinger L1_rowsleft = 0; 939d7ed1a4dSandi selinger break; 9409371c9d4SSatish Balay case 3: 9419371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(3); 942d7ed1a4dSandi selinger inputcol += L1_rowsleft; 943d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 944d7ed1a4dSandi selinger L1_rowsleft = 0; 945d7ed1a4dSandi selinger break; 9469371c9d4SSatish Balay case 4: 9479371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(4); 948d7ed1a4dSandi selinger inputcol += L1_rowsleft; 949d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 950d7ed1a4dSandi selinger L1_rowsleft = 0; 951d7ed1a4dSandi selinger break; 9529371c9d4SSatish Balay case 5: 9539371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(5); 954d7ed1a4dSandi selinger inputcol += L1_rowsleft; 955d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 956d7ed1a4dSandi selinger L1_rowsleft = 0; 957d7ed1a4dSandi selinger break; 9589371c9d4SSatish Balay case 6: 9599371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(6); 960d7ed1a4dSandi selinger inputcol += L1_rowsleft; 961d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 962d7ed1a4dSandi selinger L1_rowsleft = 0; 963d7ed1a4dSandi selinger break; 9649371c9d4SSatish Balay case 7: 9659371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(7); 966d7ed1a4dSandi selinger inputcol += L1_rowsleft; 967d7ed1a4dSandi selinger rowsleft -= L1_rowsleft; 968d7ed1a4dSandi selinger L1_rowsleft = 0; 969d7ed1a4dSandi selinger break; 9709371c9d4SSatish Balay default: 9719371c9d4SSatish Balay MatMatMultSymbolic_RowMergeMacro(8); 972d7ed1a4dSandi selinger inputcol += 8; 973d7ed1a4dSandi selinger rowsleft -= 8; 974d7ed1a4dSandi selinger L1_rowsleft -= 8; 975d7ed1a4dSandi selinger break; 976d7ed1a4dSandi selinger } 977d7ed1a4dSandi selinger inputcol_L1 = inputcol; 9787660c4dbSandi selinger L1_nnz += outputi_nnz; 9797660c4dbSandi selinger worki_L1[++L1_nrows] = L1_nnz; 980d7ed1a4dSandi selinger } 981d7ed1a4dSandi selinger 982d7ed1a4dSandi selinger /********************** L E V E L 2 ************************/ 983d7ed1a4dSandi selinger /* Merge from L1 work array to either C or to L2 work array */ 984d7ed1a4dSandi selinger if (anzi > 8) { 985d7ed1a4dSandi selinger inputi = worki_L1; 986d7ed1a4dSandi selinger inputj = workj_L1; 987d7ed1a4dSandi selinger inputcol = workcol; 988d7ed1a4dSandi selinger outputi_nnz = 0; 989d7ed1a4dSandi selinger 990d7ed1a4dSandi selinger if (anzi <= 64) outputj = cj + ci_nnz; /* Merge from L1 work array to C */ 991d7ed1a4dSandi selinger else outputj = workj_L2 + L2_nnz; /* Merge from L1 work array to L2 work array */ 992d7ed1a4dSandi selinger 993d7ed1a4dSandi selinger switch (L1_nrows) { 9949371c9d4SSatish Balay case 1: 9959371c9d4SSatish Balay brow_ptr[0] = inputj + inputi[inputcol[0]]; 996d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0] + 1]; 997d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 998d7ed1a4dSandi selinger break; 999d71ae5a4SJacob Faibussowitsch case 2: 1000d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(2); 1001d71ae5a4SJacob Faibussowitsch break; 1002d71ae5a4SJacob Faibussowitsch case 3: 1003d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(3); 1004d71ae5a4SJacob Faibussowitsch break; 1005d71ae5a4SJacob Faibussowitsch case 4: 1006d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(4); 1007d71ae5a4SJacob Faibussowitsch break; 1008d71ae5a4SJacob Faibussowitsch case 5: 1009d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(5); 1010d71ae5a4SJacob Faibussowitsch break; 1011d71ae5a4SJacob Faibussowitsch case 6: 1012d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(6); 1013d71ae5a4SJacob Faibussowitsch break; 1014d71ae5a4SJacob Faibussowitsch case 7: 1015d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(7); 1016d71ae5a4SJacob Faibussowitsch break; 1017d71ae5a4SJacob Faibussowitsch case 8: 1018d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(8); 1019d71ae5a4SJacob Faibussowitsch break; 1020d71ae5a4SJacob Faibussowitsch default: 1021d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatMatMult logic error: Not merging 1-8 rows from L1 work array!"); 1022d7ed1a4dSandi selinger } 1023d7ed1a4dSandi selinger L2_nnz += outputi_nnz; 1024d7ed1a4dSandi selinger worki_L2[++L2_nrows] = L2_nnz; 1025d7ed1a4dSandi selinger 10267660c4dbSandi selinger /************************ L E V E L 3 **********************/ 10277660c4dbSandi selinger /* Merge from L2 work array to either C or to L2 work array */ 1028d7ed1a4dSandi selinger if (anzi > 64 && (L2_nrows == 8 || rowsleft == 0)) { 1029d7ed1a4dSandi selinger inputi = worki_L2; 1030d7ed1a4dSandi selinger inputj = workj_L2; 1031d7ed1a4dSandi selinger inputcol = workcol; 1032d7ed1a4dSandi selinger outputi_nnz = 0; 1033f83700f2Sandi selinger if (rowsleft) outputj = workj_L3; 1034d7ed1a4dSandi selinger else outputj = cj + ci_nnz; 1035d7ed1a4dSandi selinger switch (L2_nrows) { 10369371c9d4SSatish Balay case 1: 10379371c9d4SSatish Balay brow_ptr[0] = inputj + inputi[inputcol[0]]; 1038d7ed1a4dSandi selinger brow_end[0] = inputj + inputi[inputcol[0] + 1]; 1039d7ed1a4dSandi selinger for (; brow_ptr[0] != brow_end[0]; ++brow_ptr[0]) outputj[outputi_nnz++] = *brow_ptr[0]; /* copy row in b over */ 1040d7ed1a4dSandi selinger break; 1041d71ae5a4SJacob Faibussowitsch case 2: 1042d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(2); 1043d71ae5a4SJacob Faibussowitsch break; 1044d71ae5a4SJacob Faibussowitsch case 3: 1045d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(3); 1046d71ae5a4SJacob Faibussowitsch break; 1047d71ae5a4SJacob Faibussowitsch case 4: 1048d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(4); 1049d71ae5a4SJacob Faibussowitsch break; 1050d71ae5a4SJacob Faibussowitsch case 5: 1051d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(5); 1052d71ae5a4SJacob Faibussowitsch break; 1053d71ae5a4SJacob Faibussowitsch case 6: 1054d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(6); 1055d71ae5a4SJacob Faibussowitsch break; 1056d71ae5a4SJacob Faibussowitsch case 7: 1057d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(7); 1058d71ae5a4SJacob Faibussowitsch break; 1059d71ae5a4SJacob Faibussowitsch case 8: 1060d71ae5a4SJacob Faibussowitsch MatMatMultSymbolic_RowMergeMacro(8); 1061d71ae5a4SJacob Faibussowitsch break; 1062d71ae5a4SJacob Faibussowitsch default: 1063d71ae5a4SJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "MatMatMult logic error: Not merging 1-8 rows from L2 work array!"); 1064d7ed1a4dSandi selinger } 1065d7ed1a4dSandi selinger L2_nrows = 1; 10667660c4dbSandi selinger L2_nnz = outputi_nnz; 10677660c4dbSandi selinger worki_L2[1] = outputi_nnz; 10687660c4dbSandi selinger /* Copy to workj_L2 */ 1069d7ed1a4dSandi selinger if (rowsleft) { 10707660c4dbSandi selinger for (k = 0; k < outputi_nnz; ++k) workj_L2[k] = outputj[k]; 1071d7ed1a4dSandi selinger } 1072d7ed1a4dSandi selinger } 1073d7ed1a4dSandi selinger } 1074d7ed1a4dSandi selinger } /* while (rowsleft) */ 1075d7ed1a4dSandi selinger #undef MatMatMultSymbolic_RowMergeMacro 1076d7ed1a4dSandi selinger 1077d7ed1a4dSandi selinger /* terminate current row */ 1078d7ed1a4dSandi selinger ci_nnz += outputi_nnz; 1079d7ed1a4dSandi selinger ci[i + 1] = ci_nnz; 1080d7ed1a4dSandi selinger } 1081d7ed1a4dSandi selinger 1082d7ed1a4dSandi selinger /* Step 3: Create the new symbolic matrix */ 10839566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 10849566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 1085d7ed1a4dSandi selinger 1086d7ed1a4dSandi selinger /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 1087d7ed1a4dSandi selinger /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 1088*f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 1089d7ed1a4dSandi selinger c->free_a = PETSC_TRUE; 1090d7ed1a4dSandi selinger c->free_ij = PETSC_TRUE; 1091d7ed1a4dSandi selinger c->nonew = 0; 1092d7ed1a4dSandi selinger 10934222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 1094d7ed1a4dSandi selinger 1095d7ed1a4dSandi selinger /* set MatInfo */ 1096d7ed1a4dSandi selinger afill = (PetscReal)ci[am] / (ai[am] + bi[bm]) + 1.e-5; 1097d7ed1a4dSandi selinger if (afill < 1.0) afill = 1.0; 10984222ddf1SHong Zhang C->info.mallocs = ndouble; 10994222ddf1SHong Zhang C->info.fill_ratio_given = fill; 11004222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1101d7ed1a4dSandi selinger 1102d7ed1a4dSandi selinger #if defined(PETSC_USE_INFO) 1103d7ed1a4dSandi selinger if (ci[am]) { 11049566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 11059566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1106d7ed1a4dSandi selinger } else { 11079566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1108d7ed1a4dSandi selinger } 1109d7ed1a4dSandi selinger #endif 1110d7ed1a4dSandi selinger 1111d7ed1a4dSandi selinger /* Step 4: Free temporary work areas */ 11129566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L1)); 11139566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L2)); 11149566063dSJacob Faibussowitsch PetscCall(PetscFree(workj_L3)); 11153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1116d7ed1a4dSandi selinger } 1117d7ed1a4dSandi selinger 1118cd093f1dSJed Brown /* concatenate unique entries and then sort */ 1119d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqAIJ_Sorted(Mat A, Mat B, PetscReal fill, Mat C) 1120d71ae5a4SJacob Faibussowitsch { 1121cd093f1dSJed Brown Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c; 1122cd093f1dSJed Brown const PetscInt *ai = a->i, *bi = b->i, *aj = a->j, *bj = b->j; 11238c78258cSHong Zhang PetscInt *ci, *cj, bcol; 1124cd093f1dSJed Brown PetscInt am = A->rmap->N, bn = B->cmap->N, bm = B->rmap->N; 1125cd093f1dSJed Brown PetscReal afill; 1126cd093f1dSJed Brown PetscInt i, j, ndouble = 0; 1127cd093f1dSJed Brown PetscSegBuffer seg, segrow; 1128cd093f1dSJed Brown char *seen; 1129cd093f1dSJed Brown 1130cd093f1dSJed Brown PetscFunctionBegin; 11319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(am + 1, &ci)); 1132cd093f1dSJed Brown ci[0] = 0; 1133cd093f1dSJed Brown 1134cd093f1dSJed Brown /* Initial FreeSpace size is fill*(nnz(A)+nnz(B)) */ 11359566063dSJacob Faibussowitsch PetscCall(PetscSegBufferCreate(sizeof(PetscInt), (PetscInt)(fill * (ai[am] + bi[bm])), &seg)); 11369566063dSJacob Faibussowitsch PetscCall(PetscSegBufferCreate(sizeof(PetscInt), 100, &segrow)); 11379566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bn, &seen)); 1138cd093f1dSJed Brown 1139cd093f1dSJed Brown /* Determine ci and cj */ 1140cd093f1dSJed Brown for (i = 0; i < am; i++) { 1141cd093f1dSJed Brown const PetscInt anzi = ai[i + 1] - ai[i]; /* number of nonzeros in this row of A, this is the number of rows of B that we merge */ 11428e3a54c0SPierre Jolivet const PetscInt *acol = PetscSafePointerPlusOffset(aj, ai[i]); /* column indices of nonzero entries in this row */ 1143cd093f1dSJed Brown PetscInt packlen = 0, *PETSC_RESTRICT crow; 11448c78258cSHong Zhang 1145cd093f1dSJed Brown /* Pack segrow */ 1146cd093f1dSJed Brown for (j = 0; j < anzi; j++) { 1147cd093f1dSJed Brown PetscInt brow = acol[j], bjstart = bi[brow], bjend = bi[brow + 1], k; 1148cd093f1dSJed Brown for (k = bjstart; k < bjend; k++) { 11498c78258cSHong Zhang bcol = bj[k]; 1150cd093f1dSJed Brown if (!seen[bcol]) { /* new entry */ 1151cd093f1dSJed Brown PetscInt *PETSC_RESTRICT slot; 11529566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(segrow, 1, &slot)); 1153cd093f1dSJed Brown *slot = bcol; 1154cd093f1dSJed Brown seen[bcol] = 1; 1155cd093f1dSJed Brown packlen++; 1156cd093f1dSJed Brown } 1157cd093f1dSJed Brown } 1158cd093f1dSJed Brown } 11598c78258cSHong Zhang 11608c78258cSHong Zhang /* Check i-th diagonal entry */ 11618c78258cSHong Zhang if (C->force_diagonals && !seen[i]) { 11628c78258cSHong Zhang PetscInt *PETSC_RESTRICT slot; 11639566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(segrow, 1, &slot)); 11648c78258cSHong Zhang *slot = i; 11658c78258cSHong Zhang seen[i] = 1; 11668c78258cSHong Zhang packlen++; 11678c78258cSHong Zhang } 11688c78258cSHong Zhang 11699566063dSJacob Faibussowitsch PetscCall(PetscSegBufferGetInts(seg, packlen, &crow)); 11709566063dSJacob Faibussowitsch PetscCall(PetscSegBufferExtractTo(segrow, crow)); 11719566063dSJacob Faibussowitsch PetscCall(PetscSortInt(packlen, crow)); 1172cd093f1dSJed Brown ci[i + 1] = ci[i] + packlen; 1173cd093f1dSJed Brown for (j = 0; j < packlen; j++) seen[crow[j]] = 0; 1174cd093f1dSJed Brown } 11759566063dSJacob Faibussowitsch PetscCall(PetscSegBufferDestroy(&segrow)); 11769566063dSJacob Faibussowitsch PetscCall(PetscFree(seen)); 1177cd093f1dSJed Brown 1178cd093f1dSJed Brown /* Column indices are in the segmented buffer */ 11799566063dSJacob Faibussowitsch PetscCall(PetscSegBufferExtractAlloc(seg, &cj)); 11809566063dSJacob Faibussowitsch PetscCall(PetscSegBufferDestroy(&seg)); 1181cd093f1dSJed Brown 1182cd093f1dSJed Brown /* put together the new symbolic matrix */ 11839566063dSJacob Faibussowitsch PetscCall(MatSetSeqAIJWithArrays_private(PetscObjectComm((PetscObject)A), am, bn, ci, cj, NULL, ((PetscObject)A)->type_name, C)); 11849566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(C, A, B)); 1185cd093f1dSJed Brown 1186cd093f1dSJed Brown /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ 1187cd093f1dSJed Brown /* These are PETSc arrays, so change flags so arrays can be deleted by PETSc */ 1188*f4f49eeaSPierre Jolivet c = (Mat_SeqAIJ *)C->data; 1189cd093f1dSJed Brown c->free_a = PETSC_TRUE; 1190cd093f1dSJed Brown c->free_ij = PETSC_TRUE; 1191cd093f1dSJed Brown c->nonew = 0; 1192cd093f1dSJed Brown 11934222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqAIJ_Sorted; 1194cd093f1dSJed Brown 1195cd093f1dSJed Brown /* set MatInfo */ 11962a09556fSStefano Zampini afill = (PetscReal)ci[am] / PetscMax(ai[am] + bi[bm], 1) + 1.e-5; 1197cd093f1dSJed Brown if (afill < 1.0) afill = 1.0; 11984222ddf1SHong Zhang C->info.mallocs = ndouble; 11994222ddf1SHong Zhang C->info.fill_ratio_given = fill; 12004222ddf1SHong Zhang C->info.fill_ratio_needed = afill; 1201cd093f1dSJed Brown 1202cd093f1dSJed Brown #if defined(PETSC_USE_INFO) 1203cd093f1dSJed Brown if (ci[am]) { 12049566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Reallocs %" PetscInt_FMT "; Fill ratio: given %g needed %g.\n", ndouble, (double)fill, (double)afill)); 12059566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Use MatMatMult(A,B,MatReuse,%g,&C) for best performance.;\n", (double)afill)); 1206cd093f1dSJed Brown } else { 12079566063dSJacob Faibussowitsch PetscCall(PetscInfo(C, "Empty matrix product\n")); 1208cd093f1dSJed Brown } 1209cd093f1dSJed Brown #endif 12103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1211cd093f1dSJed Brown } 1212cd093f1dSJed Brown 121366976f2fSJacob Faibussowitsch static PetscErrorCode MatDestroy_SeqAIJ_MatMatMultTrans(void *data) 1214d71ae5a4SJacob Faibussowitsch { 12156718818eSStefano Zampini Mat_MatMatTransMult *abt = (Mat_MatMatTransMult *)data; 12162128a86cSHong Zhang 12172128a86cSHong Zhang PetscFunctionBegin; 12189566063dSJacob Faibussowitsch PetscCall(MatTransposeColoringDestroy(&abt->matcoloring)); 12199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&abt->Bt_den)); 12209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&abt->ABt_den)); 12219566063dSJacob Faibussowitsch PetscCall(PetscFree(abt)); 12223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 12232128a86cSHong Zhang } 12242128a86cSHong Zhang 1225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C) 1226d71ae5a4SJacob Faibussowitsch { 122781d82fe4SHong Zhang Mat Bt; 122840192850SHong Zhang Mat_MatMatTransMult *abt; 12294222ddf1SHong Zhang Mat_Product *product = C->product; 12306718818eSStefano Zampini char *alg; 1231d2853540SHong Zhang 123281d82fe4SHong Zhang PetscFunctionBegin; 123328b400f6SJacob Faibussowitsch PetscCheck(product, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 123428b400f6SJacob Faibussowitsch PetscCheck(!product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 12356718818eSStefano Zampini 123681d82fe4SHong Zhang /* create symbolic Bt */ 12377fb60732SBarry Smith PetscCall(MatTransposeSymbolic(B, &Bt)); 12389566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(Bt, PetscAbs(A->cmap->bs), PetscAbs(B->cmap->bs))); 12399566063dSJacob Faibussowitsch PetscCall(MatSetType(Bt, ((PetscObject)A)->type_name)); 124081d82fe4SHong Zhang 124181d82fe4SHong Zhang /* get symbolic C=A*Bt */ 12429566063dSJacob Faibussowitsch PetscCall(PetscStrallocpy(product->alg, &alg)); 12439566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "sorted")); /* set algorithm for C = A*Bt */ 12449566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(A, Bt, fill, C)); 12459566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, alg)); /* resume original algorithm for ABt product */ 12469566063dSJacob Faibussowitsch PetscCall(PetscFree(alg)); 124781d82fe4SHong Zhang 1248a5b23f4aSJose E. Roman /* create a supporting struct for reuse intermediate dense matrices with matcoloring */ 12499566063dSJacob Faibussowitsch PetscCall(PetscNew(&abt)); 12502128a86cSHong Zhang 12516718818eSStefano Zampini product->data = abt; 12526718818eSStefano Zampini product->destroy = MatDestroy_SeqAIJ_MatMatMultTrans; 12536718818eSStefano Zampini 12544222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ; 12552128a86cSHong Zhang 12564222ddf1SHong Zhang abt->usecoloring = PETSC_FALSE; 12579566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "color", &abt->usecoloring)); 125840192850SHong Zhang if (abt->usecoloring) { 1259b9af6bddSHong Zhang /* Create MatTransposeColoring from symbolic C=A*B^T */ 1260b9af6bddSHong Zhang MatTransposeColoring matcoloring; 1261335efc43SPeter Brune MatColoring coloring; 12622128a86cSHong Zhang ISColoring iscoloring; 12632128a86cSHong Zhang Mat Bt_dense, C_dense; 1264e8354b3eSHong Zhang 12654222ddf1SHong Zhang /* inode causes memory problem */ 12669566063dSJacob Faibussowitsch PetscCall(MatSetOption(C, MAT_USE_INODES, PETSC_FALSE)); 12674222ddf1SHong Zhang 12689566063dSJacob Faibussowitsch PetscCall(MatColoringCreate(C, &coloring)); 12699566063dSJacob Faibussowitsch PetscCall(MatColoringSetDistance(coloring, 2)); 12709566063dSJacob Faibussowitsch PetscCall(MatColoringSetType(coloring, MATCOLORINGSL)); 12719566063dSJacob Faibussowitsch PetscCall(MatColoringSetFromOptions(coloring)); 12729566063dSJacob Faibussowitsch PetscCall(MatColoringApply(coloring, &iscoloring)); 12739566063dSJacob Faibussowitsch PetscCall(MatColoringDestroy(&coloring)); 12749566063dSJacob Faibussowitsch PetscCall(MatTransposeColoringCreate(C, iscoloring, &matcoloring)); 12752205254eSKarl Rupp 127640192850SHong Zhang abt->matcoloring = matcoloring; 12772205254eSKarl Rupp 12789566063dSJacob Faibussowitsch PetscCall(ISColoringDestroy(&iscoloring)); 12792128a86cSHong Zhang 12802128a86cSHong Zhang /* Create Bt_dense and C_dense = A*Bt_dense */ 12819566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &Bt_dense)); 12829566063dSJacob Faibussowitsch PetscCall(MatSetSizes(Bt_dense, A->cmap->n, matcoloring->ncolors, A->cmap->n, matcoloring->ncolors)); 12839566063dSJacob Faibussowitsch PetscCall(MatSetType(Bt_dense, MATSEQDENSE)); 12849566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(Bt_dense, NULL)); 12852205254eSKarl Rupp 12862128a86cSHong Zhang Bt_dense->assembled = PETSC_TRUE; 128740192850SHong Zhang abt->Bt_den = Bt_dense; 12882128a86cSHong Zhang 12899566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &C_dense)); 12909566063dSJacob Faibussowitsch PetscCall(MatSetSizes(C_dense, A->rmap->n, matcoloring->ncolors, A->rmap->n, matcoloring->ncolors)); 12919566063dSJacob Faibussowitsch PetscCall(MatSetType(C_dense, MATSEQDENSE)); 12929566063dSJacob Faibussowitsch PetscCall(MatSeqDenseSetPreallocation(C_dense, NULL)); 12932205254eSKarl Rupp 12942128a86cSHong Zhang Bt_dense->assembled = PETSC_TRUE; 129540192850SHong Zhang abt->ABt_den = C_dense; 1296f94ccd6cSHong Zhang 1297f94ccd6cSHong Zhang #if defined(PETSC_USE_INFO) 12981ce71dffSSatish Balay { 12994222ddf1SHong Zhang Mat_SeqAIJ *c = (Mat_SeqAIJ *)C->data; 13009371c9d4SSatish Balay PetscCall(PetscInfo(C, "Use coloring of C=A*B^T; B^T: %" PetscInt_FMT " %" PetscInt_FMT ", Bt_dense: %" PetscInt_FMT ",%" PetscInt_FMT "; Cnz %" PetscInt_FMT " / (cm*ncolors %" PetscInt_FMT ") = %g\n", B->cmap->n, B->rmap->n, Bt_dense->rmap->n, 1301*f4f49eeaSPierre Jolivet Bt_dense->cmap->n, c->nz, A->rmap->n * matcoloring->ncolors, (double)(((PetscReal)c->nz) / ((PetscReal)(A->rmap->n * matcoloring->ncolors))))); 13021ce71dffSSatish Balay } 1303f94ccd6cSHong Zhang #endif 13042128a86cSHong Zhang } 1305e99be685SHong Zhang /* clean up */ 13069566063dSJacob Faibussowitsch PetscCall(MatDestroy(&Bt)); 13073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13085df89d91SHong Zhang } 13095df89d91SHong Zhang 1310d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatTransposeMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C) 1311d71ae5a4SJacob Faibussowitsch { 13125df89d91SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c = (Mat_SeqAIJ *)C->data; 1313e2cac8caSJed Brown PetscInt *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j, anzi, bnzj, nexta, nextb, *acol, *bcol, brow; 131481d82fe4SHong Zhang PetscInt cm = C->rmap->n, *ci = c->i, *cj = c->j, i, j, cnzi, *ccol; 13155df89d91SHong Zhang PetscLogDouble flops = 0.0; 1316aa1aec99SHong Zhang MatScalar *aa = a->a, *aval, *ba = b->a, *bval, *ca, *cval; 13176718818eSStefano Zampini Mat_MatMatTransMult *abt; 13186718818eSStefano Zampini Mat_Product *product = C->product; 13195df89d91SHong Zhang 13205df89d91SHong Zhang PetscFunctionBegin; 132128b400f6SJacob Faibussowitsch PetscCheck(product, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 13226718818eSStefano Zampini abt = (Mat_MatMatTransMult *)product->data; 132328b400f6SJacob Faibussowitsch PetscCheck(abt, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 132458ed3ceaSHong Zhang /* clear old values in C */ 132558ed3ceaSHong Zhang if (!c->a) { 13269566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[cm] + 1, &ca)); 132758ed3ceaSHong Zhang c->a = ca; 132858ed3ceaSHong Zhang c->free_a = PETSC_TRUE; 132958ed3ceaSHong Zhang } else { 133058ed3ceaSHong Zhang ca = c->a; 13319566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm] + 1)); 133258ed3ceaSHong Zhang } 133358ed3ceaSHong Zhang 133440192850SHong Zhang if (abt->usecoloring) { 133540192850SHong Zhang MatTransposeColoring matcoloring = abt->matcoloring; 133640192850SHong Zhang Mat Bt_dense, C_dense = abt->ABt_den; 1337c8db22f6SHong Zhang 1338b9af6bddSHong Zhang /* Get Bt_dense by Apply MatTransposeColoring to B */ 133940192850SHong Zhang Bt_dense = abt->Bt_den; 13409566063dSJacob Faibussowitsch PetscCall(MatTransColoringApplySpToDen(matcoloring, B, Bt_dense)); 1341c8db22f6SHong Zhang 1342c8db22f6SHong Zhang /* C_dense = A*Bt_dense */ 13439566063dSJacob Faibussowitsch PetscCall(MatMatMultNumeric_SeqAIJ_SeqDense(A, Bt_dense, C_dense)); 1344c8db22f6SHong Zhang 13452128a86cSHong Zhang /* Recover C from C_dense */ 13469566063dSJacob Faibussowitsch PetscCall(MatTransColoringApplyDenToSp(matcoloring, C_dense, C)); 13473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1348c8db22f6SHong Zhang } 1349c8db22f6SHong Zhang 13501fa1209cSHong Zhang for (i = 0; i < cm; i++) { 135181d82fe4SHong Zhang anzi = ai[i + 1] - ai[i]; 13528e3a54c0SPierre Jolivet acol = PetscSafePointerPlusOffset(aj, ai[i]); 13538e3a54c0SPierre Jolivet aval = PetscSafePointerPlusOffset(aa, ai[i]); 13541fa1209cSHong Zhang cnzi = ci[i + 1] - ci[i]; 13558e3a54c0SPierre Jolivet ccol = PetscSafePointerPlusOffset(cj, ci[i]); 13566973769bSHong Zhang cval = ca + ci[i]; 13571fa1209cSHong Zhang for (j = 0; j < cnzi; j++) { 135881d82fe4SHong Zhang brow = ccol[j]; 135981d82fe4SHong Zhang bnzj = bi[brow + 1] - bi[brow]; 136081d82fe4SHong Zhang bcol = bj + bi[brow]; 13616973769bSHong Zhang bval = ba + bi[brow]; 13626973769bSHong Zhang 136381d82fe4SHong Zhang /* perform sparse inner-product c(i,j)=A[i,:]*B[j,:]^T */ 13649371c9d4SSatish Balay nexta = 0; 13659371c9d4SSatish Balay nextb = 0; 136681d82fe4SHong Zhang while (nexta < anzi && nextb < bnzj) { 13677b6d5e96SMark Adams while (nexta < anzi && acol[nexta] < bcol[nextb]) nexta++; 136881d82fe4SHong Zhang if (nexta == anzi) break; 13697b6d5e96SMark Adams while (nextb < bnzj && acol[nexta] > bcol[nextb]) nextb++; 137081d82fe4SHong Zhang if (nextb == bnzj) break; 137181d82fe4SHong Zhang if (acol[nexta] == bcol[nextb]) { 13726973769bSHong Zhang cval[j] += aval[nexta] * bval[nextb]; 13739371c9d4SSatish Balay nexta++; 13749371c9d4SSatish Balay nextb++; 137581d82fe4SHong Zhang flops += 2; 13761fa1209cSHong Zhang } 13771fa1209cSHong Zhang } 137881d82fe4SHong Zhang } 137981d82fe4SHong Zhang } 13809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 13819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 13829566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 13833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13845df89d91SHong Zhang } 13855df89d91SHong Zhang 1386d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDestroy_SeqAIJ_MatTransMatMult(void *data) 1387d71ae5a4SJacob Faibussowitsch { 13886718818eSStefano Zampini Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)data; 13896d373c3eSHong Zhang 13906d373c3eSHong Zhang PetscFunctionBegin; 13919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&atb->At)); 13921baa6e33SBarry Smith if (atb->destroy) PetscCall((*atb->destroy)(atb->data)); 13939566063dSJacob Faibussowitsch PetscCall(PetscFree(atb)); 13943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 13956d373c3eSHong Zhang } 13966d373c3eSHong Zhang 1397d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(Mat A, Mat B, PetscReal fill, Mat C) 1398d71ae5a4SJacob Faibussowitsch { 1399089a957eSStefano Zampini Mat At = NULL; 14004222ddf1SHong Zhang Mat_Product *product = C->product; 1401089a957eSStefano Zampini PetscBool flg, def, square; 1402bc011b1eSHong Zhang 1403bc011b1eSHong Zhang PetscFunctionBegin; 1404089a957eSStefano Zampini MatCheckProduct(C, 4); 1405b94d7dedSBarry Smith square = (PetscBool)(A == B && A->symmetric == PETSC_BOOL3_TRUE); 14064222ddf1SHong Zhang /* outerproduct */ 14079566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "outerproduct", &flg)); 14084222ddf1SHong Zhang if (flg) { 1409bc011b1eSHong Zhang /* create symbolic At */ 1410089a957eSStefano Zampini if (!square) { 14117fb60732SBarry Smith PetscCall(MatTransposeSymbolic(A, &At)); 14129566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(At, PetscAbs(A->cmap->bs), PetscAbs(B->cmap->bs))); 14139566063dSJacob Faibussowitsch PetscCall(MatSetType(At, ((PetscObject)A)->type_name)); 1414089a957eSStefano Zampini } 1415bc011b1eSHong Zhang /* get symbolic C=At*B */ 14169566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "sorted")); 14179566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At, B, fill, C)); 1418bc011b1eSHong Zhang 1419bc011b1eSHong Zhang /* clean up */ 142048a46eb9SPierre Jolivet if (!square) PetscCall(MatDestroy(&At)); 14216d373c3eSHong Zhang 14224222ddf1SHong Zhang C->ops->mattransposemultnumeric = MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ; /* outerproduct */ 14239566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "outerproduct")); 14243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14254222ddf1SHong Zhang } 14264222ddf1SHong Zhang 14274222ddf1SHong Zhang /* matmatmult */ 14289566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &def)); 14299566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "at*b", &flg)); 1430089a957eSStefano Zampini if (flg || def) { 14314222ddf1SHong Zhang Mat_MatTransMatMult *atb; 14324222ddf1SHong Zhang 143328b400f6SJacob Faibussowitsch PetscCheck(!product->data, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Extra product struct not empty"); 14349566063dSJacob Faibussowitsch PetscCall(PetscNew(&atb)); 143548a46eb9SPierre Jolivet if (!square) PetscCall(MatTranspose(A, MAT_INITIAL_MATRIX, &At)); 14369566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "sorted")); 14379566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqAIJ_SeqAIJ(square ? A : At, B, fill, C)); 14389566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, "at*b")); 14396718818eSStefano Zampini product->data = atb; 14406718818eSStefano Zampini product->destroy = MatDestroy_SeqAIJ_MatTransMatMult; 14414222ddf1SHong Zhang atb->At = At; 14424222ddf1SHong Zhang 14434222ddf1SHong Zhang C->ops->mattransposemultnumeric = NULL; /* see MatProductNumeric_AtB_SeqAIJ_SeqAIJ */ 14443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14454222ddf1SHong Zhang } 14464222ddf1SHong Zhang 14474222ddf1SHong Zhang SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Mat Product Algorithm is not supported"); 1448bc011b1eSHong Zhang } 1449bc011b1eSHong Zhang 1450d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeMatMultNumeric_SeqAIJ_SeqAIJ(Mat A, Mat B, Mat C) 1451d71ae5a4SJacob Faibussowitsch { 14520fbc74f4SHong Zhang Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data, *b = (Mat_SeqAIJ *)B->data, *c = (Mat_SeqAIJ *)C->data; 1453d0f46423SBarry Smith PetscInt am = A->rmap->n, anzi, *ai = a->i, *aj = a->j, *bi = b->i, *bj, bnzi, nextb; 1454d0f46423SBarry Smith PetscInt cm = C->rmap->n, *ci = c->i, *cj = c->j, crow, *cjj, i, j, k; 1455d13dce4bSSatish Balay PetscLogDouble flops = 0.0; 1456aa1aec99SHong Zhang MatScalar *aa = a->a, *ba, *ca, *caj; 1457bc011b1eSHong Zhang 1458bc011b1eSHong Zhang PetscFunctionBegin; 1459aa1aec99SHong Zhang if (!c->a) { 14609566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(ci[cm] + 1, &ca)); 14612205254eSKarl Rupp 1462aa1aec99SHong Zhang c->a = ca; 1463aa1aec99SHong Zhang c->free_a = PETSC_TRUE; 1464aa1aec99SHong Zhang } else { 1465aa1aec99SHong Zhang ca = c->a; 14669566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ca, ci[cm])); 1467aa1aec99SHong Zhang } 1468bc011b1eSHong Zhang 1469bc011b1eSHong Zhang /* compute A^T*B using outer product (A^T)[:,i]*B[i,:] */ 1470bc011b1eSHong Zhang for (i = 0; i < am; i++) { 1471bc011b1eSHong Zhang bj = b->j + bi[i]; 1472bc011b1eSHong Zhang ba = b->a + bi[i]; 1473bc011b1eSHong Zhang bnzi = bi[i + 1] - bi[i]; 1474bc011b1eSHong Zhang anzi = ai[i + 1] - ai[i]; 1475bc011b1eSHong Zhang for (j = 0; j < anzi; j++) { 1476bc011b1eSHong Zhang nextb = 0; 14770fbc74f4SHong Zhang crow = *aj++; 1478bc011b1eSHong Zhang cjj = cj + ci[crow]; 1479bc011b1eSHong Zhang caj = ca + ci[crow]; 1480bc011b1eSHong Zhang /* perform sparse axpy operation. Note cjj includes bj. */ 1481bc011b1eSHong Zhang for (k = 0; nextb < bnzi; k++) { 14820fbc74f4SHong Zhang if (cjj[k] == *(bj + nextb)) { /* ccol == bcol */ 14830fbc74f4SHong Zhang caj[k] += (*aa) * (*(ba + nextb)); 1484bc011b1eSHong Zhang nextb++; 1485bc011b1eSHong Zhang } 1486bc011b1eSHong Zhang } 1487bc011b1eSHong Zhang flops += 2 * bnzi; 14880fbc74f4SHong Zhang aa++; 1489bc011b1eSHong Zhang } 1490bc011b1eSHong Zhang } 1491bc011b1eSHong Zhang 1492bc011b1eSHong Zhang /* Assemble the final matrix and clean up */ 14939566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(C, MAT_FINAL_ASSEMBLY)); 14949566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(C, MAT_FINAL_ASSEMBLY)); 14959566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(flops)); 14963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1497bc011b1eSHong Zhang } 14989123193aSHong Zhang 1499d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultSymbolic_SeqAIJ_SeqDense(Mat A, Mat B, PetscReal fill, Mat C) 1500d71ae5a4SJacob Faibussowitsch { 15019123193aSHong Zhang PetscFunctionBegin; 15029566063dSJacob Faibussowitsch PetscCall(MatMatMultSymbolic_SeqDense_SeqDense(A, B, 0.0, C)); 15034222ddf1SHong Zhang C->ops->matmultnumeric = MatMatMultNumeric_SeqAIJ_SeqDense; 15043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15059123193aSHong Zhang } 15069123193aSHong Zhang 1507d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatMatMultNumericAdd_SeqAIJ_SeqDense(Mat A, Mat B, Mat C, const PetscBool add) 1508d71ae5a4SJacob Faibussowitsch { 1509f32d5d43SBarry Smith Mat_SeqAIJ *a = (Mat_SeqAIJ *)A->data; 15101ca9667aSStefano Zampini PetscScalar *c, r1, r2, r3, r4, *c1, *c2, *c3, *c4; 1511a4af7ca8SStefano Zampini const PetscScalar *aa, *b, *b1, *b2, *b3, *b4, *av; 1512daf57211SHong Zhang const PetscInt *aj; 151375f6d85dSStefano Zampini PetscInt cm = C->rmap->n, cn = B->cmap->n, bm, am = A->rmap->n; 151475f6d85dSStefano Zampini PetscInt clda; 151575f6d85dSStefano Zampini PetscInt am4, bm4, col, i, j, n; 15169123193aSHong Zhang 15179123193aSHong Zhang PetscFunctionBegin; 15183ba16761SJacob Faibussowitsch if (!cm || !cn) PetscFunctionReturn(PETSC_SUCCESS); 15199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJGetArrayRead(A, &av)); 152093aa15f2SStefano Zampini if (add) { 15219566063dSJacob Faibussowitsch PetscCall(MatDenseGetArray(C, &c)); 152293aa15f2SStefano Zampini } else { 15239566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayWrite(C, &c)); 152493aa15f2SStefano Zampini } 15259566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(B, &b)); 15269566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(B, &bm)); 15279566063dSJacob Faibussowitsch PetscCall(MatDenseGetLDA(C, &clda)); 152875f6d85dSStefano Zampini am4 = 4 * clda; 152975f6d85dSStefano Zampini bm4 = 4 * bm; 15305c0db29aSPierre Jolivet if (b) { 15319371c9d4SSatish Balay b1 = b; 15329371c9d4SSatish Balay b2 = b1 + bm; 15339371c9d4SSatish Balay b3 = b2 + bm; 15349371c9d4SSatish Balay b4 = b3 + bm; 15355c0db29aSPierre Jolivet } else b1 = b2 = b3 = b4 = NULL; 15369371c9d4SSatish Balay c1 = c; 15379371c9d4SSatish Balay c2 = c1 + clda; 15389371c9d4SSatish Balay c3 = c2 + clda; 15399371c9d4SSatish Balay c4 = c3 + clda; 15401ca9667aSStefano Zampini for (col = 0; col < (cn / 4) * 4; col += 4) { /* over columns of C */ 15411ca9667aSStefano Zampini for (i = 0; i < am; i++) { /* over rows of A in those columns */ 1542f32d5d43SBarry Smith r1 = r2 = r3 = r4 = 0.0; 1543f32d5d43SBarry Smith n = a->i[i + 1] - a->i[i]; 15448e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 15458e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 1546f32d5d43SBarry Smith for (j = 0; j < n; j++) { 15471ca9667aSStefano Zampini const PetscScalar aatmp = aa[j]; 15481ca9667aSStefano Zampini const PetscInt ajtmp = aj[j]; 1549730858b9SHong Zhang r1 += aatmp * b1[ajtmp]; 1550730858b9SHong Zhang r2 += aatmp * b2[ajtmp]; 1551730858b9SHong Zhang r3 += aatmp * b3[ajtmp]; 1552730858b9SHong Zhang r4 += aatmp * b4[ajtmp]; 15539123193aSHong Zhang } 155493aa15f2SStefano Zampini if (add) { 155587753ddeSHong Zhang c1[i] += r1; 155687753ddeSHong Zhang c2[i] += r2; 155787753ddeSHong Zhang c3[i] += r3; 155887753ddeSHong Zhang c4[i] += r4; 155993aa15f2SStefano Zampini } else { 156093aa15f2SStefano Zampini c1[i] = r1; 156193aa15f2SStefano Zampini c2[i] = r2; 156293aa15f2SStefano Zampini c3[i] = r3; 156393aa15f2SStefano Zampini c4[i] = r4; 156493aa15f2SStefano Zampini } 1565f32d5d43SBarry Smith } 15665c0db29aSPierre Jolivet if (b) { 15679371c9d4SSatish Balay b1 += bm4; 15689371c9d4SSatish Balay b2 += bm4; 15699371c9d4SSatish Balay b3 += bm4; 15709371c9d4SSatish Balay b4 += bm4; 15715c0db29aSPierre Jolivet } 15729371c9d4SSatish Balay c1 += am4; 15739371c9d4SSatish Balay c2 += am4; 15749371c9d4SSatish Balay c3 += am4; 15759371c9d4SSatish Balay c4 += am4; 1576f32d5d43SBarry Smith } 157793aa15f2SStefano Zampini /* process remaining columns */ 157893aa15f2SStefano Zampini if (col != cn) { 157993aa15f2SStefano Zampini PetscInt rc = cn - col; 158093aa15f2SStefano Zampini 158193aa15f2SStefano Zampini if (rc == 1) { 158293aa15f2SStefano Zampini for (i = 0; i < am; i++) { 1583f32d5d43SBarry Smith r1 = 0.0; 1584f32d5d43SBarry Smith n = a->i[i + 1] - a->i[i]; 15858e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 15868e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 158793aa15f2SStefano Zampini for (j = 0; j < n; j++) r1 += aa[j] * b1[aj[j]]; 158893aa15f2SStefano Zampini if (add) c1[i] += r1; 158993aa15f2SStefano Zampini else c1[i] = r1; 159093aa15f2SStefano Zampini } 159193aa15f2SStefano Zampini } else if (rc == 2) { 159293aa15f2SStefano Zampini for (i = 0; i < am; i++) { 159393aa15f2SStefano Zampini r1 = r2 = 0.0; 159493aa15f2SStefano Zampini n = a->i[i + 1] - a->i[i]; 15958e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 15968e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 1597f32d5d43SBarry Smith for (j = 0; j < n; j++) { 159893aa15f2SStefano Zampini const PetscScalar aatmp = aa[j]; 159993aa15f2SStefano Zampini const PetscInt ajtmp = aj[j]; 160093aa15f2SStefano Zampini r1 += aatmp * b1[ajtmp]; 160193aa15f2SStefano Zampini r2 += aatmp * b2[ajtmp]; 1602f32d5d43SBarry Smith } 160393aa15f2SStefano Zampini if (add) { 160487753ddeSHong Zhang c1[i] += r1; 160593aa15f2SStefano Zampini c2[i] += r2; 160693aa15f2SStefano Zampini } else { 160793aa15f2SStefano Zampini c1[i] = r1; 160893aa15f2SStefano Zampini c2[i] = r2; 1609f32d5d43SBarry Smith } 161093aa15f2SStefano Zampini } 161193aa15f2SStefano Zampini } else { 161293aa15f2SStefano Zampini for (i = 0; i < am; i++) { 161393aa15f2SStefano Zampini r1 = r2 = r3 = 0.0; 161493aa15f2SStefano Zampini n = a->i[i + 1] - a->i[i]; 16158e3a54c0SPierre Jolivet aj = PetscSafePointerPlusOffset(a->j, a->i[i]); 16168e3a54c0SPierre Jolivet aa = PetscSafePointerPlusOffset(av, a->i[i]); 161793aa15f2SStefano Zampini for (j = 0; j < n; j++) { 161893aa15f2SStefano Zampini const PetscScalar aatmp = aa[j]; 161993aa15f2SStefano Zampini const PetscInt ajtmp = aj[j]; 162093aa15f2SStefano Zampini r1 += aatmp * b1[ajtmp]; 162193aa15f2SStefano Zampini r2 += aatmp * b2[ajtmp]; 162293aa15f2SStefano Zampini r3 += aatmp * b3[ajtmp]; 162393aa15f2SStefano Zampini } 162493aa15f2SStefano Zampini if (add) { 162593aa15f2SStefano Zampini c1[i] += r1; 162693aa15f2SStefano Zampini c2[i] += r2; 162793aa15f2SStefano Zampini c3[i] += r3; 162893aa15f2SStefano Zampini } else { 162993aa15f2SStefano Zampini c1[i] = r1; 163093aa15f2SStefano Zampini c2[i] = r2; 163193aa15f2SStefano Zampini c3[i] = r3; 163293aa15f2SStefano Zampini } 163393aa15f2SStefano Zampini } 163493aa15f2SStefano Zampini } 1635f32d5d43SBarry Smith } 16369566063dSJacob Faibussowitsch PetscCall(PetscLogFlops(cn * (2.0 * a->nz))); 163793aa15f2SStefano Zampini if (add) { 16389566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArray(C, &c)); 163993aa15f2SStefano Zampini } else { 16409566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayWrite(C, &c)); 164193aa15f2SStefano Zampini } 16429566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(B, &b)); 16439566063dSJacob Faibussowitsch PetscCall(MatSeqAIJRestoreArrayRead(A, &av)); 16443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1645f32d5d43SBarry Smith } 1646f32d5d43SBarry Smith 1647d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMatMultNumeric_SeqAIJ_SeqDense(Mat A, Mat B, Mat C) 1648d71ae5a4SJacob Faibussowitsch { 1649f32d5d43SBarry Smith PetscFunctionBegin; 165008401ef6SPierre Jolivet PetscCheck(B->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number columns in A %" PetscInt_FMT " not equal rows in B %" PetscInt_FMT, A->cmap->n, B->rmap->n); 165108401ef6SPierre Jolivet PetscCheck(A->rmap->n == C->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number rows in C %" PetscInt_FMT " not equal rows in A %" PetscInt_FMT, C->rmap->n, A->rmap->n); 165208401ef6SPierre Jolivet PetscCheck(B->cmap->n == C->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Number columns in B %" PetscInt_FMT " not equal columns in C %" PetscInt_FMT, B->cmap->n, C->cmap->n); 16534324174eSBarry Smith 16549566063dSJacob Faibussowitsch PetscCall(MatMatMultNumericAdd_SeqAIJ_SeqDense(A, B, C, PETSC_FALSE)); 16553ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16569123193aSHong Zhang } 1657b1683b59SHong Zhang 1658d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AB(Mat C) 1659d71ae5a4SJacob Faibussowitsch { 16604222ddf1SHong Zhang PetscFunctionBegin; 16614222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqDense; 16624222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 16633ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16644222ddf1SHong Zhang } 16654222ddf1SHong Zhang 16666718818eSStefano Zampini PETSC_INTERN PetscErrorCode MatTMatTMultSymbolic_SeqAIJ_SeqDense(Mat, Mat, PetscReal, Mat); 16676718818eSStefano Zampini 1668d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(Mat C) 1669d71ae5a4SJacob Faibussowitsch { 16704222ddf1SHong Zhang PetscFunctionBegin; 16716718818eSStefano Zampini C->ops->transposematmultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense; 16724222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB; 16733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16746718818eSStefano Zampini } 16756718818eSStefano Zampini 1676d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(Mat C) 1677d71ae5a4SJacob Faibussowitsch { 16786718818eSStefano Zampini PetscFunctionBegin; 16796718818eSStefano Zampini C->ops->mattransposemultsymbolic = MatTMatTMultSymbolic_SeqAIJ_SeqDense; 16806718818eSStefano Zampini C->ops->productsymbolic = MatProductSymbolic_ABt; 16813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16824222ddf1SHong Zhang } 16834222ddf1SHong Zhang 1684d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqAIJ_SeqDense(Mat C) 1685d71ae5a4SJacob Faibussowitsch { 16864222ddf1SHong Zhang Mat_Product *product = C->product; 16874222ddf1SHong Zhang 16884222ddf1SHong Zhang PetscFunctionBegin; 16894222ddf1SHong Zhang switch (product->type) { 1690d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 1691d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AB(C)); 1692d71ae5a4SJacob Faibussowitsch break; 1693d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 1694d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_AtB(C)); 1695d71ae5a4SJacob Faibussowitsch break; 1696d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 1697d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_SeqDense_ABt(C)); 1698d71ae5a4SJacob Faibussowitsch break; 1699d71ae5a4SJacob Faibussowitsch default: 1700d71ae5a4SJacob Faibussowitsch break; 17014222ddf1SHong Zhang } 17023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17034222ddf1SHong Zhang } 17042ef1f0ffSBarry Smith 1705d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(Mat C) 1706d71ae5a4SJacob Faibussowitsch { 17074222ddf1SHong Zhang Mat_Product *product = C->product; 17084222ddf1SHong Zhang Mat A = product->A; 17094222ddf1SHong Zhang PetscBool baij; 17104222ddf1SHong Zhang 17114222ddf1SHong Zhang PetscFunctionBegin; 17129566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQBAIJ, &baij)); 17134222ddf1SHong Zhang if (!baij) { /* A is seqsbaij */ 17144222ddf1SHong Zhang PetscBool sbaij; 17159566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATSEQSBAIJ, &sbaij)); 171628b400f6SJacob Faibussowitsch PetscCheck(sbaij, PetscObjectComm((PetscObject)C), PETSC_ERR_ARG_WRONGSTATE, "Mat must be either seqbaij or seqsbaij format"); 17174222ddf1SHong Zhang 17184222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqSBAIJ_SeqDense; 17194222ddf1SHong Zhang } else { /* A is seqbaij */ 17204222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqBAIJ_SeqDense; 17214222ddf1SHong Zhang } 17224222ddf1SHong Zhang 17234222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 17243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17254222ddf1SHong Zhang } 17264222ddf1SHong Zhang 1727d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqXBAIJ_SeqDense(Mat C) 1728d71ae5a4SJacob Faibussowitsch { 17294222ddf1SHong Zhang Mat_Product *product = C->product; 17304222ddf1SHong Zhang 17314222ddf1SHong Zhang PetscFunctionBegin; 17326718818eSStefano Zampini MatCheckProduct(C, 1); 173328b400f6SJacob Faibussowitsch PetscCheck(product->A, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing A"); 1734b94d7dedSBarry Smith if (product->type == MATPRODUCT_AB || (product->type == MATPRODUCT_AtB && product->A->symmetric == PETSC_BOOL3_TRUE)) PetscCall(MatProductSetFromOptions_SeqXBAIJ_SeqDense_AB(C)); 17353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17364222ddf1SHong Zhang } 17376718818eSStefano Zampini 1738d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ_AB(Mat C) 1739d71ae5a4SJacob Faibussowitsch { 17404222ddf1SHong Zhang PetscFunctionBegin; 17414222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqDense_SeqAIJ; 17424222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 17433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17444222ddf1SHong Zhang } 17454222ddf1SHong Zhang 1746d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatProductSetFromOptions_SeqDense_SeqAIJ(Mat C) 1747d71ae5a4SJacob Faibussowitsch { 17484222ddf1SHong Zhang Mat_Product *product = C->product; 17494222ddf1SHong Zhang 17504222ddf1SHong Zhang PetscFunctionBegin; 175148a46eb9SPierre Jolivet if (product->type == MATPRODUCT_AB) PetscCall(MatProductSetFromOptions_SeqDense_SeqAIJ_AB(C)); 17523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17534222ddf1SHong Zhang } 17544222ddf1SHong Zhang 1755d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransColoringApplySpToDen_SeqAIJ(MatTransposeColoring coloring, Mat B, Mat Btdense) 1756d71ae5a4SJacob Faibussowitsch { 17572f5f1f90SHong Zhang Mat_SeqAIJ *b = (Mat_SeqAIJ *)B->data; 17582f5f1f90SHong Zhang Mat_SeqDense *btdense = (Mat_SeqDense *)Btdense->data; 17592f5f1f90SHong Zhang PetscInt *bi = b->i, *bj = b->j; 17602f5f1f90SHong Zhang PetscInt m = Btdense->rmap->n, n = Btdense->cmap->n, j, k, l, col, anz, *btcol, brow, ncolumns; 17612f5f1f90SHong Zhang MatScalar *btval, *btval_den, *ba = b->a; 17622f5f1f90SHong Zhang PetscInt *columns = coloring->columns, *colorforcol = coloring->colorforcol, ncolors = coloring->ncolors; 1763c8db22f6SHong Zhang 1764c8db22f6SHong Zhang PetscFunctionBegin; 17652f5f1f90SHong Zhang btval_den = btdense->v; 17669566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(btval_den, m * n)); 17672f5f1f90SHong Zhang for (k = 0; k < ncolors; k++) { 17682f5f1f90SHong Zhang ncolumns = coloring->ncolumns[k]; 17692f5f1f90SHong Zhang for (l = 0; l < ncolumns; l++) { /* insert a row of B to a column of Btdense */ 1770d2853540SHong Zhang col = *(columns + colorforcol[k] + l); 17712f5f1f90SHong Zhang btcol = bj + bi[col]; 17722f5f1f90SHong Zhang btval = ba + bi[col]; 17732f5f1f90SHong Zhang anz = bi[col + 1] - bi[col]; 1774d2853540SHong Zhang for (j = 0; j < anz; j++) { 17752f5f1f90SHong Zhang brow = btcol[j]; 17762f5f1f90SHong Zhang btval_den[brow] = btval[j]; 1777c8db22f6SHong Zhang } 1778c8db22f6SHong Zhang } 17792f5f1f90SHong Zhang btval_den += m; 1780c8db22f6SHong Zhang } 17813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1782c8db22f6SHong Zhang } 1783c8db22f6SHong Zhang 1784d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransColoringApplyDenToSp_SeqAIJ(MatTransposeColoring matcoloring, Mat Cden, Mat Csp) 1785d71ae5a4SJacob Faibussowitsch { 1786b2d2b04fSHong Zhang Mat_SeqAIJ *csp = (Mat_SeqAIJ *)Csp->data; 17871683a169SBarry Smith const PetscScalar *ca_den, *ca_den_ptr; 17881683a169SBarry Smith PetscScalar *ca = csp->a; 1789f99a636bSHong Zhang PetscInt k, l, m = Cden->rmap->n, ncolors = matcoloring->ncolors; 1790e88777f2SHong Zhang PetscInt brows = matcoloring->brows, *den2sp = matcoloring->den2sp; 1791077f23c2SHong Zhang PetscInt nrows, *row, *idx; 1792077f23c2SHong Zhang PetscInt *rows = matcoloring->rows, *colorforrow = matcoloring->colorforrow; 17938972f759SHong Zhang 17948972f759SHong Zhang PetscFunctionBegin; 17959566063dSJacob Faibussowitsch PetscCall(MatDenseGetArrayRead(Cden, &ca_den)); 1796f99a636bSHong Zhang 1797077f23c2SHong Zhang if (brows > 0) { 1798077f23c2SHong Zhang PetscInt *lstart, row_end, row_start; 1799980ae229SHong Zhang lstart = matcoloring->lstart; 18009566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(lstart, ncolors)); 1801eeb4fd02SHong Zhang 1802077f23c2SHong Zhang row_end = brows; 1803eeb4fd02SHong Zhang if (row_end > m) row_end = m; 1804077f23c2SHong Zhang for (row_start = 0; row_start < m; row_start += brows) { /* loop over row blocks of Csp */ 1805077f23c2SHong Zhang ca_den_ptr = ca_den; 1806980ae229SHong Zhang for (k = 0; k < ncolors; k++) { /* loop over colors (columns of Cden) */ 1807eeb4fd02SHong Zhang nrows = matcoloring->nrows[k]; 1808eeb4fd02SHong Zhang row = rows + colorforrow[k]; 1809eeb4fd02SHong Zhang idx = den2sp + colorforrow[k]; 1810eeb4fd02SHong Zhang for (l = lstart[k]; l < nrows; l++) { 1811eeb4fd02SHong Zhang if (row[l] >= row_end) { 1812eeb4fd02SHong Zhang lstart[k] = l; 1813eeb4fd02SHong Zhang break; 1814eeb4fd02SHong Zhang } else { 1815077f23c2SHong Zhang ca[idx[l]] = ca_den_ptr[row[l]]; 1816eeb4fd02SHong Zhang } 1817eeb4fd02SHong Zhang } 1818077f23c2SHong Zhang ca_den_ptr += m; 1819eeb4fd02SHong Zhang } 1820077f23c2SHong Zhang row_end += brows; 1821eeb4fd02SHong Zhang if (row_end > m) row_end = m; 1822eeb4fd02SHong Zhang } 1823077f23c2SHong Zhang } else { /* non-blocked impl: loop over columns of Csp - slow if Csp is large */ 1824077f23c2SHong Zhang ca_den_ptr = ca_den; 1825077f23c2SHong Zhang for (k = 0; k < ncolors; k++) { 1826077f23c2SHong Zhang nrows = matcoloring->nrows[k]; 1827077f23c2SHong Zhang row = rows + colorforrow[k]; 1828077f23c2SHong Zhang idx = den2sp + colorforrow[k]; 1829ad540459SPierre Jolivet for (l = 0; l < nrows; l++) ca[idx[l]] = ca_den_ptr[row[l]]; 1830077f23c2SHong Zhang ca_den_ptr += m; 1831077f23c2SHong Zhang } 1832f99a636bSHong Zhang } 1833f99a636bSHong Zhang 18349566063dSJacob Faibussowitsch PetscCall(MatDenseRestoreArrayRead(Cden, &ca_den)); 1835f99a636bSHong Zhang #if defined(PETSC_USE_INFO) 1836077f23c2SHong Zhang if (matcoloring->brows > 0) { 18379566063dSJacob Faibussowitsch PetscCall(PetscInfo(Csp, "Loop over %" PetscInt_FMT " row blocks for den2sp\n", brows)); 1838e88777f2SHong Zhang } else { 18399566063dSJacob Faibussowitsch PetscCall(PetscInfo(Csp, "Loop over colors/columns of Cden, inefficient for large sparse matrix product \n")); 1840e88777f2SHong Zhang } 1841f99a636bSHong Zhang #endif 18423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18438972f759SHong Zhang } 18448972f759SHong Zhang 1845d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTransposeColoringCreate_SeqAIJ(Mat mat, ISColoring iscoloring, MatTransposeColoring c) 1846d71ae5a4SJacob Faibussowitsch { 1847e88777f2SHong Zhang PetscInt i, n, nrows, Nbs, j, k, m, ncols, col, cm; 18481a83f524SJed Brown const PetscInt *is, *ci, *cj, *row_idx; 1849b28d80bdSHong Zhang PetscInt nis = iscoloring->n, *rowhit, bs = 1; 1850b1683b59SHong Zhang IS *isa; 1851b28d80bdSHong Zhang Mat_SeqAIJ *csp = (Mat_SeqAIJ *)mat->data; 1852e88777f2SHong Zhang PetscInt *colorforrow, *rows, *rows_i, *idxhit, *spidx, *den2sp, *den2sp_i; 1853e88777f2SHong Zhang PetscInt *colorforcol, *columns, *columns_i, brows; 1854e88777f2SHong Zhang PetscBool flg; 1855b1683b59SHong Zhang 1856b1683b59SHong Zhang PetscFunctionBegin; 18579566063dSJacob Faibussowitsch PetscCall(ISColoringGetIS(iscoloring, PETSC_USE_POINTER, PETSC_IGNORE, &isa)); 1858e99be685SHong Zhang 18597ecccc15SHong Zhang /* bs >1 is not being tested yet! */ 1860e88777f2SHong Zhang Nbs = mat->cmap->N / bs; 1861b1683b59SHong Zhang c->M = mat->rmap->N / bs; /* set total rows, columns and local rows */ 1862e88777f2SHong Zhang c->N = Nbs; 1863e88777f2SHong Zhang c->m = c->M; 1864b1683b59SHong Zhang c->rstart = 0; 1865e88777f2SHong Zhang c->brows = 100; 1866b1683b59SHong Zhang 1867b1683b59SHong Zhang c->ncolors = nis; 18689566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(nis, &c->ncolumns, nis, &c->nrows, nis + 1, &colorforrow)); 18699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(csp->nz + 1, &rows)); 18709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(csp->nz + 1, &den2sp)); 1871e88777f2SHong Zhang 1872e88777f2SHong Zhang brows = c->brows; 18739566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetInt(NULL, NULL, "-matden2sp_brows", &brows, &flg)); 1874e88777f2SHong Zhang if (flg) c->brows = brows; 187548a46eb9SPierre Jolivet if (brows > 0) PetscCall(PetscMalloc1(nis + 1, &c->lstart)); 18762205254eSKarl Rupp 1877d2853540SHong Zhang colorforrow[0] = 0; 1878d2853540SHong Zhang rows_i = rows; 1879f99a636bSHong Zhang den2sp_i = den2sp; 1880b1683b59SHong Zhang 18819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nis + 1, &colorforcol)); 18829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(Nbs + 1, &columns)); 18832205254eSKarl Rupp 1884d2853540SHong Zhang colorforcol[0] = 0; 1885d2853540SHong Zhang columns_i = columns; 1886d2853540SHong Zhang 1887077f23c2SHong Zhang /* get column-wise storage of mat */ 18889566063dSJacob Faibussowitsch PetscCall(MatGetColumnIJ_SeqAIJ_Color(mat, 0, PETSC_FALSE, PETSC_FALSE, &ncols, &ci, &cj, &spidx, NULL)); 1889b1683b59SHong Zhang 1890b28d80bdSHong Zhang cm = c->m; 18919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cm + 1, &rowhit)); 18929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(cm + 1, &idxhit)); 1893f99a636bSHong Zhang for (i = 0; i < nis; i++) { /* loop over color */ 18949566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(isa[i], &n)); 18959566063dSJacob Faibussowitsch PetscCall(ISGetIndices(isa[i], &is)); 18962205254eSKarl Rupp 1897b1683b59SHong Zhang c->ncolumns[i] = n; 18981baa6e33SBarry Smith if (n) PetscCall(PetscArraycpy(columns_i, is, n)); 1899d2853540SHong Zhang colorforcol[i + 1] = colorforcol[i] + n; 1900d2853540SHong Zhang columns_i += n; 1901b1683b59SHong Zhang 1902b1683b59SHong Zhang /* fast, crude version requires O(N*N) work */ 19039566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(rowhit, cm)); 1904e99be685SHong Zhang 1905b7caf3d6SHong Zhang for (j = 0; j < n; j++) { /* loop over columns*/ 1906b1683b59SHong Zhang col = is[j]; 1907d2853540SHong Zhang row_idx = cj + ci[col]; 1908b1683b59SHong Zhang m = ci[col + 1] - ci[col]; 1909b7caf3d6SHong Zhang for (k = 0; k < m; k++) { /* loop over columns marking them in rowhit */ 1910e99be685SHong Zhang idxhit[*row_idx] = spidx[ci[col] + k]; 1911d2853540SHong Zhang rowhit[*row_idx++] = col + 1; 1912b1683b59SHong Zhang } 1913b1683b59SHong Zhang } 1914b1683b59SHong Zhang /* count the number of hits */ 1915b1683b59SHong Zhang nrows = 0; 1916e8354b3eSHong Zhang for (j = 0; j < cm; j++) { 1917b1683b59SHong Zhang if (rowhit[j]) nrows++; 1918b1683b59SHong Zhang } 1919b1683b59SHong Zhang c->nrows[i] = nrows; 1920d2853540SHong Zhang colorforrow[i + 1] = colorforrow[i] + nrows; 1921d2853540SHong Zhang 1922b1683b59SHong Zhang nrows = 0; 1923b7caf3d6SHong Zhang for (j = 0; j < cm; j++) { /* loop over rows */ 1924b1683b59SHong Zhang if (rowhit[j]) { 1925d2853540SHong Zhang rows_i[nrows] = j; 192612b89a43SHong Zhang den2sp_i[nrows] = idxhit[j]; 1927b1683b59SHong Zhang nrows++; 1928b1683b59SHong Zhang } 1929b1683b59SHong Zhang } 1930e88777f2SHong Zhang den2sp_i += nrows; 1931077f23c2SHong Zhang 19329566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(isa[i], &is)); 1933f99a636bSHong Zhang rows_i += nrows; 1934b1683b59SHong Zhang } 19359566063dSJacob Faibussowitsch PetscCall(MatRestoreColumnIJ_SeqAIJ_Color(mat, 0, PETSC_FALSE, PETSC_FALSE, &ncols, &ci, &cj, &spidx, NULL)); 19369566063dSJacob Faibussowitsch PetscCall(PetscFree(rowhit)); 19379566063dSJacob Faibussowitsch PetscCall(ISColoringRestoreIS(iscoloring, PETSC_USE_POINTER, &isa)); 19382c71b3e2SJacob Faibussowitsch PetscCheck(csp->nz == colorforrow[nis], PETSC_COMM_SELF, PETSC_ERR_PLIB, "csp->nz %" PetscInt_FMT " != colorforrow[nis] %" PetscInt_FMT, csp->nz, colorforrow[nis]); 1939b28d80bdSHong Zhang 1940d2853540SHong Zhang c->colorforrow = colorforrow; 1941d2853540SHong Zhang c->rows = rows; 1942f99a636bSHong Zhang c->den2sp = den2sp; 1943d2853540SHong Zhang c->colorforcol = colorforcol; 1944d2853540SHong Zhang c->columns = columns; 19452205254eSKarl Rupp 19469566063dSJacob Faibussowitsch PetscCall(PetscFree(idxhit)); 19473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1948b1683b59SHong Zhang } 1949d013fc79Sandi selinger 1950d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductNumeric_AtB_SeqAIJ_SeqAIJ(Mat C) 1951d71ae5a4SJacob Faibussowitsch { 19524222ddf1SHong Zhang Mat_Product *product = C->product; 19534222ddf1SHong Zhang Mat A = product->A, B = product->B; 19544222ddf1SHong Zhang 1955df97dc6dSFande Kong PetscFunctionBegin; 19564222ddf1SHong Zhang if (C->ops->mattransposemultnumeric) { 19574222ddf1SHong Zhang /* Alg: "outerproduct" */ 19589566063dSJacob Faibussowitsch PetscCall((*C->ops->mattransposemultnumeric)(A, B, C)); 19594222ddf1SHong Zhang } else { 19604222ddf1SHong Zhang /* Alg: "matmatmult" -- C = At*B */ 19616718818eSStefano Zampini Mat_MatTransMatMult *atb = (Mat_MatTransMatMult *)product->data; 19624222ddf1SHong Zhang 196328b400f6SJacob Faibussowitsch PetscCheck(atb, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Missing product struct"); 19641cdffd5eSHong Zhang if (atb->At) { 19651cdffd5eSHong Zhang /* At is computed in MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(); 19661cdffd5eSHong Zhang user may have called MatProductReplaceMats() to get this A=product->A */ 19671cdffd5eSHong Zhang PetscCall(MatTransposeSetPrecursor(A, atb->At)); 19687fb60732SBarry Smith PetscCall(MatTranspose(A, MAT_REUSE_MATRIX, &atb->At)); 19694222ddf1SHong Zhang } 19707fb60732SBarry Smith PetscCall(MatMatMultNumeric_SeqAIJ_SeqAIJ(atb->At ? atb->At : A, B, C)); 19714222ddf1SHong Zhang } 19723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1973df97dc6dSFande Kong } 1974df97dc6dSFande Kong 1975d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSymbolic_AtB_SeqAIJ_SeqAIJ(Mat C) 1976d71ae5a4SJacob Faibussowitsch { 19774222ddf1SHong Zhang Mat_Product *product = C->product; 19784222ddf1SHong Zhang Mat A = product->A, B = product->B; 19794222ddf1SHong Zhang PetscReal fill = product->fill; 1980d013fc79Sandi selinger 1981d013fc79Sandi selinger PetscFunctionBegin; 19829566063dSJacob Faibussowitsch PetscCall(MatTransposeMatMultSymbolic_SeqAIJ_SeqAIJ(A, B, fill, C)); 19832869b61bSandi selinger 19844222ddf1SHong Zhang C->ops->productnumeric = MatProductNumeric_AtB_SeqAIJ_SeqAIJ; 19853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19862869b61bSandi selinger } 1987d013fc79Sandi selinger 1988d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AB(Mat C) 1989d71ae5a4SJacob Faibussowitsch { 19904222ddf1SHong Zhang Mat_Product *product = C->product; 19914222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 19924222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 19934222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 19944222ddf1SHong Zhang const char *algTypes[7] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge"}; 19954222ddf1SHong Zhang PetscInt nalg = 7; 19964222ddf1SHong Zhang #else 19974222ddf1SHong Zhang const char *algTypes[8] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge", "hypre"}; 19984222ddf1SHong Zhang PetscInt nalg = 8; 19994222ddf1SHong Zhang #endif 20004222ddf1SHong Zhang 20014222ddf1SHong Zhang PetscFunctionBegin; 20024222ddf1SHong Zhang /* Set default algorithm */ 20039566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 200448a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 2005d013fc79Sandi selinger 20064222ddf1SHong Zhang /* Get runtime option */ 20074222ddf1SHong Zhang if (product->api_user) { 2008d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMult", "Mat"); 20099566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmult_via", "Algorithmic approach", "MatMatMult", algTypes, nalg, algTypes[0], &alg, &flg)); 2010d0609cedSBarry Smith PetscOptionsEnd(); 20114222ddf1SHong Zhang } else { 2012d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AB", "Mat"); 20139566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AB", algTypes, nalg, algTypes[0], &alg, &flg)); 2014d0609cedSBarry Smith PetscOptionsEnd(); 2015d013fc79Sandi selinger } 201648a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 2017d013fc79Sandi selinger 20184222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AB; 20194222ddf1SHong Zhang C->ops->matmultsymbolic = MatMatMultSymbolic_SeqAIJ_SeqAIJ; 20203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20214222ddf1SHong Zhang } 2022d013fc79Sandi selinger 2023d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_AtB(Mat C) 2024d71ae5a4SJacob Faibussowitsch { 20254222ddf1SHong Zhang Mat_Product *product = C->product; 20264222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 20274222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 2028089a957eSStefano Zampini const char *algTypes[3] = {"default", "at*b", "outerproduct"}; 2029089a957eSStefano Zampini PetscInt nalg = 3; 2030d013fc79Sandi selinger 20314222ddf1SHong Zhang PetscFunctionBegin; 20324222ddf1SHong Zhang /* Get runtime option */ 20334222ddf1SHong Zhang if (product->api_user) { 2034d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatTransposeMatMult", "Mat"); 20359566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mattransposematmult_via", "Algorithmic approach", "MatTransposeMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2036d0609cedSBarry Smith PetscOptionsEnd(); 20374222ddf1SHong Zhang } else { 2038d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_AtB", "Mat"); 20399566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_AtB", algTypes, nalg, algTypes[alg], &alg, &flg)); 2040d0609cedSBarry Smith PetscOptionsEnd(); 20414222ddf1SHong Zhang } 204248a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 2043d013fc79Sandi selinger 20444222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_AtB_SeqAIJ_SeqAIJ; 20453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20464222ddf1SHong Zhang } 20474222ddf1SHong Zhang 2048d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABt(Mat C) 2049d71ae5a4SJacob Faibussowitsch { 20504222ddf1SHong Zhang Mat_Product *product = C->product; 20514222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 20524222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20534222ddf1SHong Zhang const char *algTypes[2] = {"default", "color"}; 20544222ddf1SHong Zhang PetscInt nalg = 2; 20554222ddf1SHong Zhang 20564222ddf1SHong Zhang PetscFunctionBegin; 20574222ddf1SHong Zhang /* Set default algorithm */ 20589566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(C->product->alg, "default", &flg)); 20594222ddf1SHong Zhang if (!flg) { 20604222ddf1SHong Zhang alg = 1; 20619566063dSJacob Faibussowitsch PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 20624222ddf1SHong Zhang } 20634222ddf1SHong Zhang 20644222ddf1SHong Zhang /* Get runtime option */ 20654222ddf1SHong Zhang if (product->api_user) { 2066d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatTransposeMult", "Mat"); 20679566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmattransmult_via", "Algorithmic approach", "MatMatTransposeMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2068d0609cedSBarry Smith PetscOptionsEnd(); 20694222ddf1SHong Zhang } else { 2070d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABt", "Mat"); 20719566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABt", algTypes, nalg, algTypes[alg], &alg, &flg)); 2072d0609cedSBarry Smith PetscOptionsEnd(); 20734222ddf1SHong Zhang } 207448a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 20754222ddf1SHong Zhang 20764222ddf1SHong Zhang C->ops->mattransposemultsymbolic = MatMatTransposeMultSymbolic_SeqAIJ_SeqAIJ; 20774222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABt; 20783ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20794222ddf1SHong Zhang } 20804222ddf1SHong Zhang 2081d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_PtAP(Mat C) 2082d71ae5a4SJacob Faibussowitsch { 20834222ddf1SHong Zhang Mat_Product *product = C->product; 20844222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 20854222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm -- alg=1 should be default!!! */ 20864222ddf1SHong Zhang #if !defined(PETSC_HAVE_HYPRE) 20874222ddf1SHong Zhang const char *algTypes[2] = {"scalable", "rap"}; 20884222ddf1SHong Zhang PetscInt nalg = 2; 20894222ddf1SHong Zhang #else 20904222ddf1SHong Zhang const char *algTypes[3] = {"scalable", "rap", "hypre"}; 20914222ddf1SHong Zhang PetscInt nalg = 3; 20924222ddf1SHong Zhang #endif 20934222ddf1SHong Zhang 20944222ddf1SHong Zhang PetscFunctionBegin; 20954222ddf1SHong Zhang /* Set default algorithm */ 20969566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 209748a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 20984222ddf1SHong Zhang 20994222ddf1SHong Zhang /* Get runtime option */ 21004222ddf1SHong Zhang if (product->api_user) { 2101d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatPtAP", "Mat"); 21029566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matptap_via", "Algorithmic approach", "MatPtAP", algTypes, nalg, algTypes[0], &alg, &flg)); 2103d0609cedSBarry Smith PetscOptionsEnd(); 21044222ddf1SHong Zhang } else { 2105d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_PtAP", "Mat"); 21069566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_PtAP", algTypes, nalg, algTypes[0], &alg, &flg)); 2107d0609cedSBarry Smith PetscOptionsEnd(); 21084222ddf1SHong Zhang } 210948a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21104222ddf1SHong Zhang 21114222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_PtAP_SeqAIJ_SeqAIJ; 21123ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21134222ddf1SHong Zhang } 21144222ddf1SHong Zhang 2115d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_RARt(Mat C) 2116d71ae5a4SJacob Faibussowitsch { 21174222ddf1SHong Zhang Mat_Product *product = C->product; 21184222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 21194222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 21204222ddf1SHong Zhang const char *algTypes[3] = {"r*a*rt", "r*art", "coloring_rart"}; 21214222ddf1SHong Zhang PetscInt nalg = 3; 21224222ddf1SHong Zhang 21234222ddf1SHong Zhang PetscFunctionBegin; 21244222ddf1SHong Zhang /* Set default algorithm */ 21259566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 212648a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21274222ddf1SHong Zhang 21284222ddf1SHong Zhang /* Get runtime option */ 21294222ddf1SHong Zhang if (product->api_user) { 2130d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatRARt", "Mat"); 21319566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matrart_via", "Algorithmic approach", "MatRARt", algTypes, nalg, algTypes[0], &alg, &flg)); 2132d0609cedSBarry Smith PetscOptionsEnd(); 21334222ddf1SHong Zhang } else { 2134d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_RARt", "Mat"); 21359566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_RARt", algTypes, nalg, algTypes[0], &alg, &flg)); 2136d0609cedSBarry Smith PetscOptionsEnd(); 21374222ddf1SHong Zhang } 213848a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21394222ddf1SHong Zhang 21404222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_RARt_SeqAIJ_SeqAIJ; 21413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21424222ddf1SHong Zhang } 21434222ddf1SHong Zhang 21444222ddf1SHong Zhang /* ABC = A*B*C = A*(B*C); ABC's algorithm must be chosen from AB's algorithm */ 2145d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatProductSetFromOptions_SeqAIJ_ABC(Mat C) 2146d71ae5a4SJacob Faibussowitsch { 21474222ddf1SHong Zhang Mat_Product *product = C->product; 21484222ddf1SHong Zhang PetscInt alg = 0; /* default algorithm */ 21494222ddf1SHong Zhang PetscBool flg = PETSC_FALSE; 21504222ddf1SHong Zhang const char *algTypes[7] = {"sorted", "scalable", "scalable_fast", "heap", "btheap", "llcondensed", "rowmerge"}; 21514222ddf1SHong Zhang PetscInt nalg = 7; 21524222ddf1SHong Zhang 21534222ddf1SHong Zhang PetscFunctionBegin; 21544222ddf1SHong Zhang /* Set default algorithm */ 21559566063dSJacob Faibussowitsch PetscCall(PetscStrcmp(product->alg, "default", &flg)); 215648a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21574222ddf1SHong Zhang 21584222ddf1SHong Zhang /* Get runtime option */ 21594222ddf1SHong Zhang if (product->api_user) { 2160d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatMatMatMult", "Mat"); 21619566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-matmatmatmult_via", "Algorithmic approach", "MatMatMatMult", algTypes, nalg, algTypes[alg], &alg, &flg)); 2162d0609cedSBarry Smith PetscOptionsEnd(); 21634222ddf1SHong Zhang } else { 2164d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)C), ((PetscObject)C)->prefix, "MatProduct_ABC", "Mat"); 21659566063dSJacob Faibussowitsch PetscCall(PetscOptionsEList("-mat_product_algorithm", "Algorithmic approach", "MatProduct_ABC", algTypes, nalg, algTypes[alg], &alg, &flg)); 2166d0609cedSBarry Smith PetscOptionsEnd(); 21674222ddf1SHong Zhang } 216848a46eb9SPierre Jolivet if (flg) PetscCall(MatProductSetAlgorithm(C, (MatProductAlgorithm)algTypes[alg])); 21694222ddf1SHong Zhang 21704222ddf1SHong Zhang C->ops->matmatmultsymbolic = MatMatMatMultSymbolic_SeqAIJ_SeqAIJ_SeqAIJ; 21714222ddf1SHong Zhang C->ops->productsymbolic = MatProductSymbolic_ABC; 21723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21734222ddf1SHong Zhang } 21744222ddf1SHong Zhang 2175d71ae5a4SJacob Faibussowitsch PetscErrorCode MatProductSetFromOptions_SeqAIJ(Mat C) 2176d71ae5a4SJacob Faibussowitsch { 21774222ddf1SHong Zhang Mat_Product *product = C->product; 21784222ddf1SHong Zhang 21794222ddf1SHong Zhang PetscFunctionBegin; 21804222ddf1SHong Zhang switch (product->type) { 2181d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AB: 2182d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_AB(C)); 2183d71ae5a4SJacob Faibussowitsch break; 2184d71ae5a4SJacob Faibussowitsch case MATPRODUCT_AtB: 2185d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_AtB(C)); 2186d71ae5a4SJacob Faibussowitsch break; 2187d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABt: 2188d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_ABt(C)); 2189d71ae5a4SJacob Faibussowitsch break; 2190d71ae5a4SJacob Faibussowitsch case MATPRODUCT_PtAP: 2191d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_PtAP(C)); 2192d71ae5a4SJacob Faibussowitsch break; 2193d71ae5a4SJacob Faibussowitsch case MATPRODUCT_RARt: 2194d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_RARt(C)); 2195d71ae5a4SJacob Faibussowitsch break; 2196d71ae5a4SJacob Faibussowitsch case MATPRODUCT_ABC: 2197d71ae5a4SJacob Faibussowitsch PetscCall(MatProductSetFromOptions_SeqAIJ_ABC(C)); 2198d71ae5a4SJacob Faibussowitsch break; 2199d71ae5a4SJacob Faibussowitsch default: 2200d71ae5a4SJacob Faibussowitsch break; 22014222ddf1SHong Zhang } 22023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2203d013fc79Sandi selinger } 2204