xref: /petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c (revision 2254c79cdb5d3068035901ffb3a9e475ca618742)
1 #if defined(PETSC_HAVE_LIBMKL_INTEL_ILP64)
2 #define MKL_ILP64
3 #endif
4 
5 #include <../src/mat/impls/aij/seq/aij.h>    /*I "petscmat.h" I*/
6 #include <../src/mat/impls/dense/seq/dense.h>
7 #include <petscblaslapack.h>
8 
9 #include <stdio.h>
10 #include <stdlib.h>
11 #include <math.h>
12 #include <mkl.h>
13 
14 /*
15  *  Possible mkl_pardiso phases that controls the execution of the solver.
16  *  For more information check mkl_pardiso manual.
17  */
18 #define JOB_ANALYSIS 11
19 #define JOB_ANALYSIS_NUMERICAL_FACTORIZATION 12
20 #define JOB_ANALYSIS_NUMERICAL_FACTORIZATION_SOLVE_ITERATIVE_REFINEMENT 13
21 #define JOB_NUMERICAL_FACTORIZATION 22
22 #define JOB_NUMERICAL_FACTORIZATION_SOLVE_ITERATIVE_REFINEMENT 23
23 #define JOB_SOLVE_ITERATIVE_REFINEMENT 33
24 #define JOB_SOLVE_FORWARD_SUBSTITUTION 331
25 #define JOB_SOLVE_DIAGONAL_SUBSTITUTION 332
26 #define JOB_SOLVE_BACKWARD_SUBSTITUTION 333
27 #define JOB_RELEASE_OF_LU_MEMORY 0
28 #define JOB_RELEASE_OF_ALL_MEMORY -1
29 
30 #define IPARM_SIZE 64
31 
32 #if defined(PETSC_USE_64BIT_INDICES)
33  #if defined(PETSC_HAVE_LIBMKL_INTEL_ILP64)
34   /* sizeof(MKL_INT) == sizeof(long long int) if ilp64*/
35   #define INT_TYPE long long int
36   #define MKL_PARDISO pardiso
37   #define MKL_PARDISO_INIT pardisoinit
38  #else
39   #define INT_TYPE long long int
40   #define MKL_PARDISO pardiso_64
41   #define MKL_PARDISO_INIT pardiso_64init
42  #endif
43 #else
44  #define INT_TYPE int
45  #define MKL_PARDISO pardiso
46  #define MKL_PARDISO_INIT pardisoinit
47 #endif
48 
49 
50 /*
51  *  Internal data structure.
52  *  For more information check mkl_pardiso manual.
53  */
54 typedef struct {
55 
56   /* Configuration vector*/
57   INT_TYPE     iparm[IPARM_SIZE];
58 
59   /*
60    * Internal mkl_pardiso memory location.
61    * After the first call to mkl_pardiso do not modify pt, as that could cause a serious memory leak.
62    */
63   void         *pt[IPARM_SIZE];
64 
65   /* Basic mkl_pardiso info*/
66   INT_TYPE     phase, maxfct, mnum, mtype, n, nrhs, msglvl, err;
67 
68   /* Matrix structure*/
69   void         *a;
70   INT_TYPE     *ia, *ja;
71 
72   /* Number of non-zero elements*/
73   INT_TYPE     nz;
74 
75   /* Row permutaton vector*/
76   INT_TYPE     *perm;
77 
78   /* Define if matrix preserves sparse structure.*/
79   MatStructure matstruc;
80 
81   /* Schur complement */
82   PetscScalar  *schur;
83   PetscInt     schur_size;
84   PetscInt     *schur_idxs;
85   PetscScalar  *schur_work;
86   PetscBLASInt schur_work_size;
87   PetscInt     schur_solver_type;
88   PetscInt     *schur_pivots;
89   PetscBool    schur_factored;
90   PetscBool    schur_inverted;
91 
92   /* True if mkl_pardiso function have been used.*/
93   PetscBool CleanUp;
94 } Mat_MKL_PARDISO;
95 
96 
97 void pardiso_64init(void *pt, INT_TYPE *mtype, INT_TYPE iparm [])
98 {
99   int iparm_copy[IPARM_SIZE], mtype_copy, i;
100 
101   mtype_copy = *mtype;
102   pardisoinit(pt, &mtype_copy, iparm_copy);
103   for(i = 0; i < IPARM_SIZE; i++){
104     iparm[i] = iparm_copy[i];
105   }
106 }
107 
108 #undef __FUNCT__
109 #define __FUNCT__ "MatMKLPardisoFactorSchur_Private"
110 static PetscErrorCode MatMKLPardisoFactorSchur_Private(Mat_MKL_PARDISO* mpardiso)
111 {
112   PetscBLASInt   B_N,B_ierr;
113   PetscErrorCode ierr;
114 
115   PetscFunctionBegin;
116   if (mpardiso->schur_factored) {
117     PetscFunctionReturn(0);
118   }
119   ierr = PetscBLASIntCast(mpardiso->schur_size,&B_N);CHKERRQ(ierr);
120   switch (mpardiso->schur_solver_type) {
121     case 1: /* symmetric */
122       if (!mpardiso->schur_pivots) {
123         ierr = PetscMalloc1(B_N,&mpardiso->schur_pivots);CHKERRQ(ierr);
124       }
125       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
126       PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,mpardiso->schur_work,&mpardiso->schur_work_size,&B_ierr));
127       ierr = PetscFPTrapPop();CHKERRQ(ierr);
128       if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRF Lapack routine %d",(int)B_ierr);
129       break;
130     case 2: /* hermitian solver */
131       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
132       PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&B_N,mpardiso->schur,&B_N,&B_ierr));
133       ierr = PetscFPTrapPop();CHKERRQ(ierr);
134       if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRF Lapack routine %d",(int)B_ierr);
135       break;
136     default: /* general */
137       if (!mpardiso->schur_pivots) {
138         ierr = PetscMalloc1(B_N,&mpardiso->schur_pivots);CHKERRQ(ierr);
139       }
140       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
141       PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&B_N,&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,&B_ierr));
142       ierr = PetscFPTrapPop();CHKERRQ(ierr);
143       if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRF Lapack routine %d",(int)B_ierr);
144       break;
145   }
146   mpardiso->schur_factored = PETSC_TRUE;
147   PetscFunctionReturn(0);
148 }
149 
150 #undef __FUNCT__
151 #define __FUNCT__ "MatMKLPardisoInvertSchur_Private"
152 static PetscErrorCode MatMKLPardisoInvertSchur_Private(Mat_MKL_PARDISO* mpardiso)
153 {
154   PetscBLASInt   B_N,B_ierr;
155   PetscErrorCode ierr;
156 
157   PetscFunctionBegin;
158   ierr = MatMKLPardisoFactorSchur_Private(mpardiso);CHKERRQ(ierr);
159   ierr = PetscBLASIntCast(mpardiso->schur_size,&B_N);CHKERRQ(ierr);
160   switch (mpardiso->schur_solver_type) {
161     case 1: /* symmetric */
162       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
163       PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,mpardiso->schur_work,&B_ierr));
164       ierr = PetscFPTrapPop();CHKERRQ(ierr);
165       if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRI Lapack routine %d",(int)B_ierr);
166       break;
167     case 2: /* hermitian solver */
168       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
169       PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&B_N,mpardiso->schur,&B_N,&B_ierr));
170       ierr = PetscFPTrapPop();CHKERRQ(ierr);
171       if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRI Lapack routine %d",(int)B_ierr);
172       break;
173     default: /* general */
174       ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
175       PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,mpardiso->schur_work,&mpardiso->schur_work_size,&B_ierr));
176       ierr = PetscFPTrapPop();CHKERRQ(ierr);
177       if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRI Lapack routine %d",(int)B_ierr);
178       break;
179   }
180   mpardiso->schur_inverted = PETSC_TRUE;
181   PetscFunctionReturn(0);
182 }
183 
184 #undef __FUNCT__
185 #define __FUNCT__ "MatMKLPardisoSolveSchur_Private"
186 static PetscErrorCode MatMKLPardisoSolveSchur_Private(Mat_MKL_PARDISO* mpardiso, PetscScalar *B, PetscScalar *X)
187 {
188   PetscScalar    one=1.,zero=0.,*schur_rhs,*schur_sol;
189   PetscBLASInt   B_N,B_Nrhs,B_ierr;
190   char           type[2];
191   PetscErrorCode ierr;
192 
193   PetscFunctionBegin;
194   ierr = MatMKLPardisoFactorSchur_Private(mpardiso);CHKERRQ(ierr);
195   ierr = PetscBLASIntCast(mpardiso->schur_size,&B_N);CHKERRQ(ierr);
196   ierr = PetscBLASIntCast(mpardiso->nrhs,&B_Nrhs);CHKERRQ(ierr);
197   if (X == B && mpardiso->schur_inverted) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"X and B cannot point to the same address");
198   if (X != B) { /* using LAPACK *TRS subroutines */
199     ierr = PetscMemcpy(X,B,B_N*B_Nrhs*sizeof(PetscScalar));CHKERRQ(ierr);
200   }
201   schur_rhs = B;
202   schur_sol = X;
203   switch (mpardiso->schur_solver_type) {
204     case 1: /* symmetric solver */
205       if (mpardiso->schur_inverted) {
206         PetscStackCallBLAS("BLASsymm",BLASsymm_("L","L",&B_N,&B_Nrhs,&one,mpardiso->schur,&B_N,schur_rhs,&B_N,&zero,schur_sol,&B_N));
207       } else {
208         ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
209         PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&B_N,&B_Nrhs,mpardiso->schur,&B_N,mpardiso->schur_pivots,schur_sol,&B_N,&B_ierr));
210         ierr = PetscFPTrapPop();CHKERRQ(ierr);
211         if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRS Lapack routine %d",(int)B_ierr);
212       }
213       break;
214     case 2: /* hermitian solver */
215       if (mpardiso->schur_inverted) { /* BLAShemm should go here */
216         PetscStackCallBLAS("BLASsymm",BLASsymm_("L","L",&B_N,&B_Nrhs,&one,mpardiso->schur,&B_N,schur_rhs,&B_N,&zero,schur_sol,&B_N));
217       } else {
218         ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
219         PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&B_N,&B_Nrhs,mpardiso->schur,&B_N,schur_sol,&B_N,&B_ierr));
220         ierr = PetscFPTrapPop();CHKERRQ(ierr);
221         if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRS Lapack routine %d",(int)B_ierr);
222       }
223       break;
224     default: /* general */
225       switch (mpardiso->iparm[12-1]) {
226         case 1:
227           sprintf(type,"C");
228           break;
229         case 2:
230           sprintf(type,"T");
231           break;
232         default:
233           sprintf(type,"N");
234           break;
235       }
236       if (mpardiso->schur_inverted) {
237         PetscStackCallBLAS("BLASgemm",BLASgemm_(type,"N",&B_N,&B_Nrhs,&B_N,&one,mpardiso->schur,&B_N,schur_rhs,&B_N,&zero,schur_sol,&B_N));
238       } else {
239         ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr);
240         PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(type,&B_N,&B_Nrhs,mpardiso->schur,&B_N,mpardiso->schur_pivots,schur_sol,&B_N,&B_ierr));
241         ierr = PetscFPTrapPop();CHKERRQ(ierr);
242         if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRS Lapack routine %d",(int)B_ierr);
243       }
244       break;
245   }
246   PetscFunctionReturn(0);
247 }
248 
249 
250 #undef __FUNCT__
251 #define __FUNCT__ "MatFactorSetSchurIS_MKL_PARDISO"
252 PetscErrorCode MatFactorSetSchurIS_MKL_PARDISO(Mat F, IS is)
253 {
254   Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr;
255   const PetscInt  *idxs;
256   PetscInt        size,i;
257   PetscMPIInt     csize;
258   PetscErrorCode  ierr;
259 
260   PetscFunctionBegin;
261   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)F),&csize);CHKERRQ(ierr);
262   if (csize > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MKL_PARDISO parallel Schur complements not yet supported from PETSc\n");
263   ierr = ISGetLocalSize(is,&size);CHKERRQ(ierr);
264   if (mpardiso->schur_size != size) {
265     mpardiso->schur_size = size;
266     ierr = PetscFree2(mpardiso->schur,mpardiso->schur_work);CHKERRQ(ierr);
267     ierr = PetscFree(mpardiso->schur_idxs);CHKERRQ(ierr);
268     ierr = PetscFree(mpardiso->schur_pivots);CHKERRQ(ierr);
269     ierr = PetscBLASIntCast(PetscMax(mpardiso->n,2*size),&mpardiso->schur_work_size);CHKERRQ(ierr);
270     ierr = PetscMalloc2(size*size,&mpardiso->schur,mpardiso->schur_work_size,&mpardiso->schur_work);CHKERRQ(ierr);
271     ierr = PetscMalloc1(size,&mpardiso->schur_idxs);CHKERRQ(ierr);
272   }
273   ierr = PetscMemzero(mpardiso->perm,mpardiso->n*sizeof(INT_TYPE));CHKERRQ(ierr);
274   ierr = ISGetIndices(is,&idxs);CHKERRQ(ierr);
275   ierr = PetscMemcpy(mpardiso->schur_idxs,idxs,size*sizeof(PetscInt));CHKERRQ(ierr);
276   for (i=0;i<size;i++) mpardiso->perm[idxs[i]] = 1;
277   ierr = ISRestoreIndices(is,&idxs);CHKERRQ(ierr);
278   if (size) { /* turn on Schur switch if we the set of indices is not empty */
279     mpardiso->iparm[36-1] = 2;
280   }
281   mpardiso->schur_factored = PETSC_FALSE;
282   mpardiso->schur_inverted = PETSC_FALSE;
283   PetscFunctionReturn(0);
284 }
285 
286 #undef __FUNCT__
287 #define __FUNCT__ "MatFactorCreateSchurComplement_MKL_PARDISO"
288 PetscErrorCode MatFactorCreateSchurComplement_MKL_PARDISO(Mat F,Mat* S)
289 {
290   Mat             St;
291   Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr;
292   PetscScalar     *array;
293   PetscErrorCode  ierr;
294 
295   PetscFunctionBegin;
296   if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it");
297   else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before");
298 
299   ierr = MatCreate(PetscObjectComm((PetscObject)F),&St);CHKERRQ(ierr);
300   ierr = MatSetSizes(St,PETSC_DECIDE,PETSC_DECIDE,mpardiso->schur_size,mpardiso->schur_size);CHKERRQ(ierr);
301   ierr = MatSetType(St,MATDENSE);CHKERRQ(ierr);
302   ierr = MatSetUp(St);CHKERRQ(ierr);
303   ierr = MatDenseGetArray(St,&array);CHKERRQ(ierr);
304   ierr = PetscMemcpy(array,mpardiso->schur,mpardiso->schur_size*mpardiso->schur_size*sizeof(PetscScalar));CHKERRQ(ierr);
305   ierr = MatDenseRestoreArray(St,&array);CHKERRQ(ierr);
306   *S = St;
307   PetscFunctionReturn(0);
308 }
309 
310 #undef __FUNCT__
311 #define __FUNCT__ "MatFactorGetSchurComplement_MKL_PARDISO"
312 PetscErrorCode MatFactorGetSchurComplement_MKL_PARDISO(Mat F,Mat* S)
313 {
314   Mat             St;
315   Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr;
316   PetscErrorCode  ierr;
317 
318   PetscFunctionBegin;
319   if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it");
320   else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before");
321 
322   ierr = MatCreateSeqDense(PetscObjectComm((PetscObject)F),mpardiso->schur_size,mpardiso->schur_size,mpardiso->schur,&St);CHKERRQ(ierr);
323   *S = St;
324   PetscFunctionReturn(0);
325 }
326 
327 #undef __FUNCT__
328 #define __FUNCT__ "MatFactorInvertSchurComplement_MKL_PARDISO"
329 PetscErrorCode MatFactorInvertSchurComplement_MKL_PARDISO(Mat F)
330 {
331   Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr;
332   PetscErrorCode  ierr;
333 
334   PetscFunctionBegin;
335   if (!mpardiso->iparm[36-1]) { /* do nothing */
336     PetscFunctionReturn(0);
337   }
338   if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before");
339   ierr = MatMKLPardisoInvertSchur_Private(mpardiso);CHKERRQ(ierr);
340   PetscFunctionReturn(0);
341 }
342 
343 #undef __FUNCT__
344 #define __FUNCT__ "MatFactorSolveSchurComplement_MKL_PARDISO"
345 PetscErrorCode MatFactorSolveSchurComplement_MKL_PARDISO(Mat F, Vec rhs, Vec sol)
346 {
347   Mat_MKL_PARDISO   *mpardiso =(Mat_MKL_PARDISO*)F->spptr;
348   PetscScalar       *asol,*arhs;
349   PetscErrorCode ierr;
350 
351   PetscFunctionBegin;
352   if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it");
353   else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before");
354 
355   mpardiso->nrhs = 1;
356   ierr = VecGetArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr);
357   ierr = VecGetArray(sol,&asol);CHKERRQ(ierr);
358   ierr = MatMKLPardisoSolveSchur_Private(mpardiso,arhs,asol);CHKERRQ(ierr);
359   ierr = VecRestoreArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr);
360   ierr = VecRestoreArray(sol,&asol);CHKERRQ(ierr);
361   PetscFunctionReturn(0);
362 }
363 
364 #undef __FUNCT__
365 #define __FUNCT__ "MatFactorSolveSchurComplementTranspose_MKL_PARDISO"
366 PetscErrorCode MatFactorSolveSchurComplementTranspose_MKL_PARDISO(Mat F, Vec rhs, Vec sol)
367 {
368   Mat_MKL_PARDISO   *mpardiso =(Mat_MKL_PARDISO*)F->spptr;
369   PetscScalar       *asol,*arhs;
370   PetscErrorCode ierr;
371 
372   PetscFunctionBegin;
373   if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it");
374   else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before");
375 
376   mpardiso->nrhs = 1;
377   ierr = VecGetArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr);
378   ierr = VecGetArray(sol,&asol);CHKERRQ(ierr);
379   mpardiso->iparm[12 - 1] = 2;
380   ierr = MatMKLPardisoSolveSchur_Private(mpardiso,arhs,asol);CHKERRQ(ierr);
381   mpardiso->iparm[12 - 1] = 0;
382   ierr = VecRestoreArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr);
383   ierr = VecRestoreArray(sol,&asol);CHKERRQ(ierr);
384   PetscFunctionReturn(0);
385 }
386 /*
387  * Copy the elements of matrix A.
388  * Input:
389  *   - Mat A: MATSEQAIJ matrix
390  *   - int shift: matrix index.
391  *     - 0 for c representation
392  *     - 1 for fortran representation
393  *   - MatReuse reuse:
394  *     - MAT_INITIAL_MATRIX: Create a new aij representation
395  *     - MAT_REUSE_MATRIX: Reuse all aij representation and just change values
396  * Output:
397  *   - int *nnz: Number of nonzero-elements.
398  *   - int **r pointer to i index
399  *   - int **c pointer to j elements
400  *   - MATRIXTYPE **v: Non-zero elements
401  */
402 #undef __FUNCT__
403 #define __FUNCT__ "MatCopy_MKL_PARDISO"
404 PetscErrorCode MatCopy_MKL_PARDISO(Mat A, MatReuse reuse, INT_TYPE *nnz, INT_TYPE **r, INT_TYPE **c, void **v)
405 {
406   Mat_SeqAIJ *aa=(Mat_SeqAIJ*)A->data;
407 
408   PetscFunctionBegin;
409   *v=aa->a;
410   if (reuse == MAT_INITIAL_MATRIX) {
411     *r   = (INT_TYPE*)aa->i;
412     *c   = (INT_TYPE*)aa->j;
413     *nnz = aa->nz;
414   }
415   PetscFunctionReturn(0);
416 }
417 
418 /*
419  * Free memory for Mat_MKL_PARDISO structure and pointers to objects.
420  */
421 #undef __FUNCT__
422 #define __FUNCT__ "MatDestroy_MKL_PARDISO"
423 PetscErrorCode MatDestroy_MKL_PARDISO(Mat A)
424 {
425   Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)A->spptr;
426   PetscErrorCode  ierr;
427 
428   PetscFunctionBegin;
429   /* Terminate instance, deallocate memories */
430   if (mat_mkl_pardiso->CleanUp) {
431     mat_mkl_pardiso->phase = JOB_RELEASE_OF_ALL_MEMORY;
432 
433     MKL_PARDISO (mat_mkl_pardiso->pt,
434       &mat_mkl_pardiso->maxfct,
435       &mat_mkl_pardiso->mnum,
436       &mat_mkl_pardiso->mtype,
437       &mat_mkl_pardiso->phase,
438       &mat_mkl_pardiso->n,
439       NULL,
440       NULL,
441       NULL,
442       mat_mkl_pardiso->perm,
443       &mat_mkl_pardiso->nrhs,
444       mat_mkl_pardiso->iparm,
445       &mat_mkl_pardiso->msglvl,
446       NULL,
447       NULL,
448       &mat_mkl_pardiso->err);
449   }
450   ierr = PetscFree(mat_mkl_pardiso->perm);CHKERRQ(ierr);
451   ierr = PetscFree2(mat_mkl_pardiso->schur,mat_mkl_pardiso->schur_work);CHKERRQ(ierr);
452   ierr = PetscFree(mat_mkl_pardiso->schur_idxs);CHKERRQ(ierr);
453   ierr = PetscFree(mat_mkl_pardiso->schur_pivots);CHKERRQ(ierr);
454   ierr = PetscFree(A->spptr);CHKERRQ(ierr);
455 
456   /* clear composed functions */
457   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverPackage_C",NULL);CHKERRQ(ierr);
458   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorSetSchurIS_C",NULL);CHKERRQ(ierr);
459   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorCreateSchurComplement_C",NULL);CHKERRQ(ierr);
460   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSchurComplement_C",NULL);CHKERRQ(ierr);
461   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorInvertSchurComplement_C",NULL);CHKERRQ(ierr);
462   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorSolveSchurComplement_C",NULL);CHKERRQ(ierr);
463   ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorSolveSchurComplementTranspose_C",NULL);CHKERRQ(ierr);
464   ierr = PetscObjectComposeFunction((PetscObject)A,"MatMkl_PardisoSetCntl_C",NULL);CHKERRQ(ierr);
465 
466   ierr = MatDestroy_SeqAIJ(A);CHKERRQ(ierr);
467   PetscFunctionReturn(0);
468 }
469 
470 #undef __FUNCT__
471 #define __FUNCT__ "MatMKLPardisoScatterSchur_Private"
472 static PetscErrorCode MatMKLPardisoScatterSchur_Private(Mat_MKL_PARDISO *mpardiso, PetscScalar *whole, PetscScalar *schur, PetscBool reduce)
473 {
474   PetscFunctionBegin;
475 
476   if (reduce) { /* data given for the whole matrix */
477     PetscInt i,m=0,p=0;
478     for (i=0;i<mpardiso->nrhs;i++) {
479       PetscInt j;
480       for (j=0;j<mpardiso->schur_size;j++) {
481         schur[p+j] = whole[m+mpardiso->schur_idxs[j]];
482       }
483       m += mpardiso->n;
484       p += mpardiso->schur_size;
485     }
486   } else { /* from Schur to whole */
487     PetscInt i,m=0,p=0;
488     for (i=0;i<mpardiso->nrhs;i++) {
489       PetscInt j;
490       for (j=0;j<mpardiso->schur_size;j++) {
491         whole[m+mpardiso->schur_idxs[j]] = schur[p+j];
492       }
493       m += mpardiso->n;
494       p += mpardiso->schur_size;
495     }
496   }
497   PetscFunctionReturn(0);
498 }
499 
500 /*
501  * Computes Ax = b
502  */
503 #undef __FUNCT__
504 #define __FUNCT__ "MatSolve_MKL_PARDISO"
505 PetscErrorCode MatSolve_MKL_PARDISO(Mat A,Vec b,Vec x)
506 {
507   Mat_MKL_PARDISO   *mat_mkl_pardiso=(Mat_MKL_PARDISO*)(A)->spptr;
508   PetscErrorCode    ierr;
509   PetscScalar       *xarray;
510   const PetscScalar *barray;
511 
512   PetscFunctionBegin;
513   mat_mkl_pardiso->nrhs = 1;
514   ierr = VecGetArray(x,&xarray);CHKERRQ(ierr);
515   ierr = VecGetArrayRead(b,&barray);CHKERRQ(ierr);
516 
517   /* solve phase */
518   /*-------------*/
519   if (!mat_mkl_pardiso->schur) {
520     mat_mkl_pardiso->phase = JOB_SOLVE_ITERATIVE_REFINEMENT;
521   } else {
522     mat_mkl_pardiso->phase = JOB_SOLVE_FORWARD_SUBSTITUTION;
523   }
524   mat_mkl_pardiso->iparm[6-1] = 0;
525   MKL_PARDISO (mat_mkl_pardiso->pt,
526     &mat_mkl_pardiso->maxfct,
527     &mat_mkl_pardiso->mnum,
528     &mat_mkl_pardiso->mtype,
529     &mat_mkl_pardiso->phase,
530     &mat_mkl_pardiso->n,
531     mat_mkl_pardiso->a,
532     mat_mkl_pardiso->ia,
533     mat_mkl_pardiso->ja,
534     mat_mkl_pardiso->perm,
535     &mat_mkl_pardiso->nrhs,
536     mat_mkl_pardiso->iparm,
537     &mat_mkl_pardiso->msglvl,
538     (void*)barray,
539     (void*)xarray,
540     &mat_mkl_pardiso->err);
541 
542   if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err);
543 
544   if (mat_mkl_pardiso->schur) { /* solve Schur complement and expand solution */
545     PetscInt shift = mat_mkl_pardiso->schur_size;
546 
547     /* if inverted, uses BLAS *MM subroutines, otherwise LAPACK *TRS */
548     if (!mat_mkl_pardiso->schur_inverted) {
549       shift = 0;
550     }
551 
552     /* solve Schur complement */
553     ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work,PETSC_TRUE);CHKERRQ(ierr);
554     ierr = MatMKLPardisoSolveSchur_Private(mat_mkl_pardiso,mat_mkl_pardiso->schur_work,mat_mkl_pardiso->schur_work+shift);CHKERRQ(ierr);
555     ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work+shift,PETSC_FALSE);CHKERRQ(ierr);
556 
557     /* expansion phase */
558     mat_mkl_pardiso->iparm[6-1] = 1;
559     mat_mkl_pardiso->phase = JOB_SOLVE_BACKWARD_SUBSTITUTION;
560     MKL_PARDISO (mat_mkl_pardiso->pt,
561       &mat_mkl_pardiso->maxfct,
562       &mat_mkl_pardiso->mnum,
563       &mat_mkl_pardiso->mtype,
564       &mat_mkl_pardiso->phase,
565       &mat_mkl_pardiso->n,
566       mat_mkl_pardiso->a,
567       mat_mkl_pardiso->ia,
568       mat_mkl_pardiso->ja,
569       mat_mkl_pardiso->perm,
570       &mat_mkl_pardiso->nrhs,
571       mat_mkl_pardiso->iparm,
572       &mat_mkl_pardiso->msglvl,
573       (void*)xarray,
574       (void*)mat_mkl_pardiso->schur_work, /* according to the specs, the solution vector is always used */
575       &mat_mkl_pardiso->err);
576 
577     if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err);
578     mat_mkl_pardiso->iparm[6-1] = 0;
579   }
580   ierr = VecRestoreArray(x,&xarray);CHKERRQ(ierr);
581   ierr = VecRestoreArrayRead(b,&barray);CHKERRQ(ierr);
582   mat_mkl_pardiso->CleanUp = PETSC_TRUE;
583   PetscFunctionReturn(0);
584 }
585 
586 
587 #undef __FUNCT__
588 #define __FUNCT__ "MatSolveTranspose_MKL_PARDISO"
589 PetscErrorCode MatSolveTranspose_MKL_PARDISO(Mat A,Vec b,Vec x)
590 {
591   Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)A->spptr;
592   PetscErrorCode  ierr;
593 
594   PetscFunctionBegin;
595 #if defined(PETSC_USE_COMPLEX)
596   mat_mkl_pardiso->iparm[12 - 1] = 1;
597 #else
598   mat_mkl_pardiso->iparm[12 - 1] = 2;
599 #endif
600   ierr = MatSolve_MKL_PARDISO(A,b,x);CHKERRQ(ierr);
601   mat_mkl_pardiso->iparm[12 - 1] = 0;
602   PetscFunctionReturn(0);
603 }
604 
605 
606 #undef __FUNCT__
607 #define __FUNCT__ "MatMatSolve_MKL_PARDISO"
608 PetscErrorCode MatMatSolve_MKL_PARDISO(Mat A,Mat B,Mat X)
609 {
610   Mat_MKL_PARDISO   *mat_mkl_pardiso=(Mat_MKL_PARDISO*)(A)->spptr;
611   PetscErrorCode    ierr;
612   PetscScalar       *barray, *xarray;
613   PetscBool         flg;
614 
615   PetscFunctionBegin;
616   ierr = PetscObjectTypeCompare((PetscObject)B,MATSEQDENSE,&flg);CHKERRQ(ierr);
617   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix B must be MATSEQDENSE matrix");
618   ierr = PetscObjectTypeCompare((PetscObject)X,MATSEQDENSE,&flg);CHKERRQ(ierr);
619   if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix X must be MATSEQDENSE matrix");
620 
621   ierr = MatGetSize(B,NULL,(PetscInt*)&mat_mkl_pardiso->nrhs);CHKERRQ(ierr);
622 
623   if(mat_mkl_pardiso->nrhs > 0){
624     ierr = MatDenseGetArray(B,&barray);
625     ierr = MatDenseGetArray(X,&xarray);
626 
627     /* solve phase */
628     /*-------------*/
629     if (!mat_mkl_pardiso->schur) {
630       mat_mkl_pardiso->phase = JOB_SOLVE_ITERATIVE_REFINEMENT;
631     } else {
632       mat_mkl_pardiso->phase = JOB_SOLVE_FORWARD_SUBSTITUTION;
633     }
634     mat_mkl_pardiso->iparm[6-1] = 0;
635     MKL_PARDISO (mat_mkl_pardiso->pt,
636       &mat_mkl_pardiso->maxfct,
637       &mat_mkl_pardiso->mnum,
638       &mat_mkl_pardiso->mtype,
639       &mat_mkl_pardiso->phase,
640       &mat_mkl_pardiso->n,
641       mat_mkl_pardiso->a,
642       mat_mkl_pardiso->ia,
643       mat_mkl_pardiso->ja,
644       mat_mkl_pardiso->perm,
645       &mat_mkl_pardiso->nrhs,
646       mat_mkl_pardiso->iparm,
647       &mat_mkl_pardiso->msglvl,
648       (void*)barray,
649       (void*)xarray,
650       &mat_mkl_pardiso->err);
651     if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err);
652 
653     if (mat_mkl_pardiso->schur) { /* solve Schur complement and expand solution */
654       PetscScalar *o_schur_work = NULL;
655       PetscInt    shift = mat_mkl_pardiso->schur_size*mat_mkl_pardiso->nrhs,scale;
656       PetscInt    mem = mat_mkl_pardiso->n*mat_mkl_pardiso->nrhs;
657 
658       /* allocate extra memory if it is needed */
659       scale = 1;
660       if (mat_mkl_pardiso->schur_inverted) {
661         scale = 2;
662       }
663       mem *= scale;
664       if (mem > mat_mkl_pardiso->schur_work_size) {
665         o_schur_work = mat_mkl_pardiso->schur_work;
666         ierr = PetscMalloc1(mem,&mat_mkl_pardiso->schur_work);CHKERRQ(ierr);
667       }
668 
669       /* if inverted, uses BLAS *MM subroutines, otherwise LAPACK *TRS */
670       if (!mat_mkl_pardiso->schur_inverted) {
671         shift = 0;
672       }
673 
674       /* solve Schur complement */
675       ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work,PETSC_TRUE);CHKERRQ(ierr);
676       ierr = MatMKLPardisoSolveSchur_Private(mat_mkl_pardiso,mat_mkl_pardiso->schur_work,mat_mkl_pardiso->schur_work+shift);CHKERRQ(ierr);
677       ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work+shift,PETSC_FALSE);CHKERRQ(ierr);
678 
679       /* expansion phase */
680       mat_mkl_pardiso->iparm[6-1] = 1;
681       mat_mkl_pardiso->phase = JOB_SOLVE_BACKWARD_SUBSTITUTION;
682       MKL_PARDISO (mat_mkl_pardiso->pt,
683         &mat_mkl_pardiso->maxfct,
684         &mat_mkl_pardiso->mnum,
685         &mat_mkl_pardiso->mtype,
686         &mat_mkl_pardiso->phase,
687         &mat_mkl_pardiso->n,
688         mat_mkl_pardiso->a,
689         mat_mkl_pardiso->ia,
690         mat_mkl_pardiso->ja,
691         mat_mkl_pardiso->perm,
692         &mat_mkl_pardiso->nrhs,
693         mat_mkl_pardiso->iparm,
694         &mat_mkl_pardiso->msglvl,
695         (void*)xarray,
696         (void*)mat_mkl_pardiso->schur_work, /* according to the specs, the solution vector is always used */
697         &mat_mkl_pardiso->err);
698       if (o_schur_work) { /* restore original schur_work (minimal size) */
699         ierr = PetscFree(mat_mkl_pardiso->schur_work);CHKERRQ(ierr);
700         mat_mkl_pardiso->schur_work = o_schur_work;
701       }
702       if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err);
703       mat_mkl_pardiso->iparm[6-1] = 0;
704     }
705   }
706   mat_mkl_pardiso->CleanUp = PETSC_TRUE;
707   PetscFunctionReturn(0);
708 }
709 
710 /*
711  * LU Decomposition
712  */
713 #undef __FUNCT__
714 #define __FUNCT__ "MatFactorNumeric_MKL_PARDISO"
715 PetscErrorCode MatFactorNumeric_MKL_PARDISO(Mat F,Mat A,const MatFactorInfo *info)
716 {
717   Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)(F)->spptr;
718   PetscErrorCode  ierr;
719 
720   /* numerical factorization phase */
721   /*-------------------------------*/
722   PetscFunctionBegin;
723   mat_mkl_pardiso->matstruc = SAME_NONZERO_PATTERN;
724   ierr = MatCopy_MKL_PARDISO(A, MAT_REUSE_MATRIX, &mat_mkl_pardiso->nz, &mat_mkl_pardiso->ia, &mat_mkl_pardiso->ja, &mat_mkl_pardiso->a);CHKERRQ(ierr);
725 
726   /* numerical factorization phase */
727   /*-------------------------------*/
728   mat_mkl_pardiso->phase = JOB_NUMERICAL_FACTORIZATION;
729   MKL_PARDISO (mat_mkl_pardiso->pt,
730     &mat_mkl_pardiso->maxfct,
731     &mat_mkl_pardiso->mnum,
732     &mat_mkl_pardiso->mtype,
733     &mat_mkl_pardiso->phase,
734     &mat_mkl_pardiso->n,
735     mat_mkl_pardiso->a,
736     mat_mkl_pardiso->ia,
737     mat_mkl_pardiso->ja,
738     mat_mkl_pardiso->perm,
739     &mat_mkl_pardiso->nrhs,
740     mat_mkl_pardiso->iparm,
741     &mat_mkl_pardiso->msglvl,
742     NULL,
743     (void*)mat_mkl_pardiso->schur,
744     &mat_mkl_pardiso->err);
745   if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err);
746 
747   if (mat_mkl_pardiso->schur) { /* schur output from pardiso is in row major format */
748     PetscInt j,k,n=mat_mkl_pardiso->schur_size;
749     for (j=0; j<n; j++) {
750       for (k=0; k<j; k++) {
751         PetscScalar tmp = mat_mkl_pardiso->schur[j + k*n];
752         mat_mkl_pardiso->schur[j + k*n] = mat_mkl_pardiso->schur[k + j*n];
753         mat_mkl_pardiso->schur[k + j*n] = tmp;
754       }
755     }
756   }
757   mat_mkl_pardiso->matstruc = SAME_NONZERO_PATTERN;
758   mat_mkl_pardiso->CleanUp  = PETSC_TRUE;
759   mat_mkl_pardiso->schur_factored = PETSC_FALSE;
760   mat_mkl_pardiso->schur_inverted = PETSC_FALSE;
761   mat_mkl_pardiso->schur_solver_type = 0;
762   PetscFunctionReturn(0);
763 }
764 
765 /* Sets mkl_pardiso options from the options database */
766 #undef __FUNCT__
767 #define __FUNCT__ "PetscSetMKL_PARDISOFromOptions"
768 PetscErrorCode PetscSetMKL_PARDISOFromOptions(Mat F, Mat A)
769 {
770   Mat_MKL_PARDISO     *mat_mkl_pardiso = (Mat_MKL_PARDISO*)F->spptr;
771   PetscErrorCode      ierr;
772   PetscInt            icntl;
773   PetscBool           flg;
774   int                 pt[IPARM_SIZE], threads = 1;
775 
776   PetscFunctionBegin;
777   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"MKL_PARDISO Options","Mat");CHKERRQ(ierr);
778   ierr = PetscOptionsInt("-mat_mkl_pardiso_65","Number of threads to use","None",threads,&threads,&flg);CHKERRQ(ierr);
779   if (flg) mkl_set_num_threads(threads);
780 
781   ierr = PetscOptionsInt("-mat_mkl_pardiso_66","Maximum number of factors with identical sparsity structure that must be kept in memory at the same time","None",mat_mkl_pardiso->maxfct,&icntl,&flg);CHKERRQ(ierr);
782   if (flg) mat_mkl_pardiso->maxfct = icntl;
783 
784   ierr = PetscOptionsInt("-mat_mkl_pardiso_67","Indicates the actual matrix for the solution phase","None",mat_mkl_pardiso->mnum,&icntl,&flg);CHKERRQ(ierr);
785   if (flg) mat_mkl_pardiso->mnum = icntl;
786 
787   ierr = PetscOptionsInt("-mat_mkl_pardiso_68","Message level information","None",mat_mkl_pardiso->msglvl,&icntl,&flg);CHKERRQ(ierr);
788   if (flg) mat_mkl_pardiso->msglvl = icntl;
789 
790   ierr = PetscOptionsInt("-mat_mkl_pardiso_69","Defines the matrix type","None",mat_mkl_pardiso->mtype,&icntl,&flg);CHKERRQ(ierr);
791   if(flg){
792    mat_mkl_pardiso->mtype = icntl;
793    MKL_PARDISO_INIT(&pt, &mat_mkl_pardiso->mtype, mat_mkl_pardiso->iparm);
794 #if defined(PETSC_USE_REAL_SINGLE)
795     mat_mkl_pardiso->iparm[27] = 1;
796 #else
797     mat_mkl_pardiso->iparm[27] = 0;
798 #endif
799     mat_mkl_pardiso->iparm[34] = 1;
800   }
801   ierr = PetscOptionsInt("-mat_mkl_pardiso_1","Use default values","None",mat_mkl_pardiso->iparm[0],&icntl,&flg);CHKERRQ(ierr);
802 
803   if(flg && icntl != 0){
804     ierr = PetscOptionsInt("-mat_mkl_pardiso_2","Fill-in reducing ordering for the input matrix","None",mat_mkl_pardiso->iparm[1],&icntl,&flg);CHKERRQ(ierr);
805     if (flg) mat_mkl_pardiso->iparm[1] = icntl;
806 
807     ierr = PetscOptionsInt("-mat_mkl_pardiso_4","Preconditioned CGS/CG","None",mat_mkl_pardiso->iparm[3],&icntl,&flg);CHKERRQ(ierr);
808     if (flg) mat_mkl_pardiso->iparm[3] = icntl;
809 
810     ierr = PetscOptionsInt("-mat_mkl_pardiso_5","User permutation","None",mat_mkl_pardiso->iparm[4],&icntl,&flg);CHKERRQ(ierr);
811     if (flg) mat_mkl_pardiso->iparm[4] = icntl;
812 
813     ierr = PetscOptionsInt("-mat_mkl_pardiso_6","Write solution on x","None",mat_mkl_pardiso->iparm[5],&icntl,&flg);CHKERRQ(ierr);
814     if (flg) mat_mkl_pardiso->iparm[5] = icntl;
815 
816     ierr = PetscOptionsInt("-mat_mkl_pardiso_8","Iterative refinement step","None",mat_mkl_pardiso->iparm[7],&icntl,&flg);CHKERRQ(ierr);
817     if (flg) mat_mkl_pardiso->iparm[7] = icntl;
818 
819     ierr = PetscOptionsInt("-mat_mkl_pardiso_10","Pivoting perturbation","None",mat_mkl_pardiso->iparm[9],&icntl,&flg);CHKERRQ(ierr);
820     if (flg) mat_mkl_pardiso->iparm[9] = icntl;
821 
822     ierr = PetscOptionsInt("-mat_mkl_pardiso_11","Scaling vectors","None",mat_mkl_pardiso->iparm[10],&icntl,&flg);CHKERRQ(ierr);
823     if (flg) mat_mkl_pardiso->iparm[10] = icntl;
824 
825     ierr = PetscOptionsInt("-mat_mkl_pardiso_12","Solve with transposed or conjugate transposed matrix A","None",mat_mkl_pardiso->iparm[11],&icntl,&flg);CHKERRQ(ierr);
826     if (flg) mat_mkl_pardiso->iparm[11] = icntl;
827 
828     ierr = PetscOptionsInt("-mat_mkl_pardiso_13","Improved accuracy using (non-) symmetric weighted matching","None",mat_mkl_pardiso->iparm[12],&icntl,&flg);CHKERRQ(ierr);
829     if (flg) mat_mkl_pardiso->iparm[12] = icntl;
830 
831     ierr = PetscOptionsInt("-mat_mkl_pardiso_18","Numbers of non-zero elements","None",mat_mkl_pardiso->iparm[17],&icntl,&flg);CHKERRQ(ierr);
832     if (flg) mat_mkl_pardiso->iparm[17] = icntl;
833 
834     ierr = PetscOptionsInt("-mat_mkl_pardiso_19","Report number of floating point operations","None",mat_mkl_pardiso->iparm[18],&icntl,&flg);CHKERRQ(ierr);
835     if (flg) mat_mkl_pardiso->iparm[18] = icntl;
836 
837     ierr = PetscOptionsInt("-mat_mkl_pardiso_21","Pivoting for symmetric indefinite matrices","None",mat_mkl_pardiso->iparm[20],&icntl,&flg);CHKERRQ(ierr);
838     if (flg) mat_mkl_pardiso->iparm[20] = icntl;
839 
840     ierr = PetscOptionsInt("-mat_mkl_pardiso_24","Parallel factorization control","None",mat_mkl_pardiso->iparm[23],&icntl,&flg);CHKERRQ(ierr);
841     if (flg) mat_mkl_pardiso->iparm[23] = icntl;
842 
843     ierr = PetscOptionsInt("-mat_mkl_pardiso_25","Parallel forward/backward solve control","None",mat_mkl_pardiso->iparm[24],&icntl,&flg);CHKERRQ(ierr);
844     if (flg) mat_mkl_pardiso->iparm[24] = icntl;
845 
846     ierr = PetscOptionsInt("-mat_mkl_pardiso_27","Matrix checker","None",mat_mkl_pardiso->iparm[26],&icntl,&flg);CHKERRQ(ierr);
847     if (flg) mat_mkl_pardiso->iparm[26] = icntl;
848 
849     ierr = PetscOptionsInt("-mat_mkl_pardiso_31","Partial solve and computing selected components of the solution vectors","None",mat_mkl_pardiso->iparm[30],&icntl,&flg);CHKERRQ(ierr);
850     if (flg) mat_mkl_pardiso->iparm[30] = icntl;
851 
852     ierr = PetscOptionsInt("-mat_mkl_pardiso_34","Optimal number of threads for conditional numerical reproducibility (CNR) mode","None",mat_mkl_pardiso->iparm[33],&icntl,&flg);CHKERRQ(ierr);
853     if (flg) mat_mkl_pardiso->iparm[33] = icntl;
854 
855     ierr = PetscOptionsInt("-mat_mkl_pardiso_60","Intel MKL_PARDISO mode","None",mat_mkl_pardiso->iparm[59],&icntl,&flg);CHKERRQ(ierr);
856     if (flg) mat_mkl_pardiso->iparm[59] = icntl;
857   }
858   PetscOptionsEnd();
859   PetscFunctionReturn(0);
860 }
861 
862 #undef __FUNCT__
863 #define __FUNCT__ "MatFactorMKL_PARDISOInitialize_Private"
864 PetscErrorCode MatFactorMKL_PARDISOInitialize_Private(Mat A, MatFactorType ftype, Mat_MKL_PARDISO *mat_mkl_pardiso)
865 {
866   PetscErrorCode ierr;
867   PetscInt       i;
868 
869   PetscFunctionBegin;
870   for ( i = 0; i < IPARM_SIZE; i++ ){
871     mat_mkl_pardiso->iparm[i] = 0;
872   }
873 
874   for ( i = 0; i < IPARM_SIZE; i++ ){
875     mat_mkl_pardiso->pt[i] = 0;
876   }
877 
878   /* Default options for both sym and unsym */
879   mat_mkl_pardiso->iparm[ 0] =  1; /* Solver default parameters overriden with provided by iparm */
880   mat_mkl_pardiso->iparm[ 1] =  2; /* Metis reordering */
881   mat_mkl_pardiso->iparm[ 5] =  0; /* Write solution into x */
882   mat_mkl_pardiso->iparm[ 7] =  2; /* Max number of iterative refinement steps */
883   mat_mkl_pardiso->iparm[17] = -1; /* Output: Number of nonzeros in the factor LU */
884   mat_mkl_pardiso->iparm[18] = -1; /* Output: Mflops for LU factorization */
885 #if 0
886   mat_mkl_pardiso->iparm[23] =  1; /* Parallel factorization control*/
887 #endif
888   mat_mkl_pardiso->iparm[34] =  1; /* Cluster Sparse Solver use C-style indexing for ia and ja arrays */
889   mat_mkl_pardiso->iparm[39] =  0; /* Input: matrix/rhs/solution stored on master */
890 
891   mat_mkl_pardiso->CleanUp   = PETSC_FALSE;
892   mat_mkl_pardiso->maxfct    = 1; /* Maximum number of numerical factorizations. */
893   mat_mkl_pardiso->mnum      = 1; /* Which factorization to use. */
894   mat_mkl_pardiso->msglvl    = 0; /* 0: do not print 1: Print statistical information in file */
895   mat_mkl_pardiso->phase     = -1;
896   mat_mkl_pardiso->err       = 0;
897 
898   mat_mkl_pardiso->n         = A->rmap->N;
899   mat_mkl_pardiso->nrhs      = 1;
900   mat_mkl_pardiso->err       = 0;
901   mat_mkl_pardiso->phase     = -1;
902 
903   if(ftype == MAT_FACTOR_LU){
904     /* Default type for non-sym */
905 #if defined(PETSC_USE_COMPLEX)
906     mat_mkl_pardiso->mtype     = 13;
907 #else
908     mat_mkl_pardiso->mtype     = 11;
909 #endif
910 
911     mat_mkl_pardiso->iparm[ 9] = 13; /* Perturb the pivot elements with 1E-13 */
912     mat_mkl_pardiso->iparm[10] =  1; /* Use nonsymmetric permutation and scaling MPS */
913     mat_mkl_pardiso->iparm[12] =  1; /* Switch on Maximum Weighted Matching algorithm (default for non-symmetric) */
914 
915   } else {
916     /* Default type for sym */
917 #if defined(PETSC_USE_COMPLEX)
918     mat_mkl_pardiso ->mtype    = 3;
919 #else
920     mat_mkl_pardiso ->mtype    = -2;
921 #endif
922     mat_mkl_pardiso->iparm[ 9] = 13; /* Perturb the pivot elements with 1E-13 */
923     mat_mkl_pardiso->iparm[10] = 0; /* Use nonsymmetric permutation and scaling MPS */
924     mat_mkl_pardiso->iparm[12] = 1; /* Switch on Maximum Weighted Matching algorithm (default for non-symmetric) */
925 /*    mat_mkl_pardiso->iparm[20] =  1; */ /* Apply 1x1 and 2x2 Bunch-Kaufman pivoting during the factorization process */
926 #if defined(PETSC_USE_DEBUG)
927     mat_mkl_pardiso->iparm[26] = 1; /* Matrix checker */
928 #endif
929   }
930   ierr = PetscMalloc1(A->rmap->N*sizeof(INT_TYPE), &mat_mkl_pardiso->perm);CHKERRQ(ierr);
931   for(i = 0; i < A->rmap->N; i++){
932     mat_mkl_pardiso->perm[i] = 0;
933   }
934   mat_mkl_pardiso->schur_size = 0;
935   PetscFunctionReturn(0);
936 }
937 
938 /*
939  * Symbolic decomposition. Mkl_Pardiso analysis phase.
940  */
941 #undef __FUNCT__
942 #define __FUNCT__ "MatFactorSymbolic_AIJMKL_PARDISO_Private"
943 PetscErrorCode MatFactorSymbolic_AIJMKL_PARDISO_Private(Mat F,Mat A,const MatFactorInfo *info)
944 {
945   Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO*)F->spptr;
946   PetscErrorCode  ierr;
947 
948   PetscFunctionBegin;
949   mat_mkl_pardiso->matstruc = DIFFERENT_NONZERO_PATTERN;
950 
951   /* Set MKL_PARDISO options from the options database */
952   ierr = PetscSetMKL_PARDISOFromOptions(F,A);CHKERRQ(ierr);
953 
954   ierr = MatCopy_MKL_PARDISO(A, MAT_INITIAL_MATRIX, &mat_mkl_pardiso->nz, &mat_mkl_pardiso->ia, &mat_mkl_pardiso->ja, &mat_mkl_pardiso->a);CHKERRQ(ierr);
955   mat_mkl_pardiso->n = A->rmap->N;
956 
957   /* analysis phase */
958   /*----------------*/
959   mat_mkl_pardiso->phase = JOB_ANALYSIS;
960 
961   MKL_PARDISO (mat_mkl_pardiso->pt,
962     &mat_mkl_pardiso->maxfct,
963     &mat_mkl_pardiso->mnum,
964     &mat_mkl_pardiso->mtype,
965     &mat_mkl_pardiso->phase,
966     &mat_mkl_pardiso->n,
967     mat_mkl_pardiso->a,
968     mat_mkl_pardiso->ia,
969     mat_mkl_pardiso->ja,
970     mat_mkl_pardiso->perm,
971     &mat_mkl_pardiso->nrhs,
972     mat_mkl_pardiso->iparm,
973     &mat_mkl_pardiso->msglvl,
974     NULL,
975     NULL,
976     &mat_mkl_pardiso->err);
977   if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d\n. Please check manual",mat_mkl_pardiso->err);
978 
979   mat_mkl_pardiso->CleanUp = PETSC_TRUE;
980 
981   if (F->factortype == MAT_FACTOR_LU) {
982     F->ops->lufactornumeric = MatFactorNumeric_MKL_PARDISO;
983   } else {
984     F->ops->choleskyfactornumeric = MatFactorNumeric_MKL_PARDISO;
985   }
986   F->ops->solve           = MatSolve_MKL_PARDISO;
987   F->ops->solvetranspose  = MatSolveTranspose_MKL_PARDISO;
988   F->ops->matsolve        = MatMatSolve_MKL_PARDISO;
989   PetscFunctionReturn(0);
990 }
991 
992 #undef __FUNCT__
993 #define __FUNCT__ "MatLUFactorSymbolic_AIJMKL_PARDISO"
994 PetscErrorCode MatLUFactorSymbolic_AIJMKL_PARDISO(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info)
995 {
996   PetscErrorCode ierr;
997 
998   PetscFunctionBegin;
999   ierr = MatFactorSymbolic_AIJMKL_PARDISO_Private(F, A, info);CHKERRQ(ierr);
1000   PetscFunctionReturn(0);
1001 }
1002 
1003 #undef __FUNCT__
1004 #define __FUNCT__ "MatCholeskyFactorSymbolic_AIJMKL_PARDISO"
1005 PetscErrorCode MatCholeskyFactorSymbolic_AIJMKL_PARDISO(Mat F,Mat A,IS r,const MatFactorInfo *info)
1006 {
1007   PetscErrorCode ierr;
1008 
1009   PetscFunctionBegin;
1010   ierr = MatFactorSymbolic_AIJMKL_PARDISO_Private(F, A, info);CHKERRQ(ierr);
1011   PetscFunctionReturn(0);
1012 }
1013 
1014 #undef __FUNCT__
1015 #define __FUNCT__ "MatView_MKL_PARDISO"
1016 PetscErrorCode MatView_MKL_PARDISO(Mat A, PetscViewer viewer)
1017 {
1018   PetscErrorCode    ierr;
1019   PetscBool         iascii;
1020   PetscViewerFormat format;
1021   Mat_MKL_PARDISO   *mat_mkl_pardiso=(Mat_MKL_PARDISO*)A->spptr;
1022   PetscInt          i;
1023 
1024   PetscFunctionBegin;
1025   /* check if matrix is mkl_pardiso type */
1026   if (A->ops->solve != MatSolve_MKL_PARDISO) PetscFunctionReturn(0);
1027 
1028   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1029   if (iascii) {
1030     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1031     if (format == PETSC_VIEWER_ASCII_INFO) {
1032       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO run parameters:\n");CHKERRQ(ierr);
1033       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO phase:             %d \n",mat_mkl_pardiso->phase);CHKERRQ(ierr);
1034       for(i = 1; i <= 64; i++){
1035         ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO iparm[%d]:     %d \n",i, mat_mkl_pardiso->iparm[i - 1]);CHKERRQ(ierr);
1036       }
1037       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO maxfct:     %d \n", mat_mkl_pardiso->maxfct);CHKERRQ(ierr);
1038       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO mnum:     %d \n", mat_mkl_pardiso->mnum);CHKERRQ(ierr);
1039       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO mtype:     %d \n", mat_mkl_pardiso->mtype);CHKERRQ(ierr);
1040       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO n:     %d \n", mat_mkl_pardiso->n);CHKERRQ(ierr);
1041       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO nrhs:     %d \n", mat_mkl_pardiso->nrhs);CHKERRQ(ierr);
1042       ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO msglvl:     %d \n", mat_mkl_pardiso->msglvl);CHKERRQ(ierr);
1043     }
1044   }
1045   PetscFunctionReturn(0);
1046 }
1047 
1048 
1049 #undef __FUNCT__
1050 #define __FUNCT__ "MatGetInfo_MKL_PARDISO"
1051 PetscErrorCode MatGetInfo_MKL_PARDISO(Mat A, MatInfoType flag, MatInfo *info)
1052 {
1053   Mat_MKL_PARDISO *mat_mkl_pardiso =(Mat_MKL_PARDISO*)A->spptr;
1054 
1055   PetscFunctionBegin;
1056   info->block_size        = 1.0;
1057   info->nz_allocated      = mat_mkl_pardiso->nz + 0.0;
1058   info->nz_unneeded       = 0.0;
1059   info->assemblies        = 0.0;
1060   info->mallocs           = 0.0;
1061   info->memory            = 0.0;
1062   info->fill_ratio_given  = 0;
1063   info->fill_ratio_needed = 0;
1064   info->factor_mallocs    = 0;
1065   PetscFunctionReturn(0);
1066 }
1067 
1068 #undef __FUNCT__
1069 #define __FUNCT__ "MatMkl_PardisoSetCntl_MKL_PARDISO"
1070 PetscErrorCode MatMkl_PardisoSetCntl_MKL_PARDISO(Mat F,PetscInt icntl,PetscInt ival)
1071 {
1072   Mat_MKL_PARDISO *mat_mkl_pardiso =(Mat_MKL_PARDISO*)F->spptr;
1073 
1074   PetscFunctionBegin;
1075   if(icntl <= 64){
1076     mat_mkl_pardiso->iparm[icntl - 1] = ival;
1077   } else {
1078     if(icntl == 65)
1079       mkl_set_num_threads((int)ival);
1080     else if(icntl == 66)
1081       mat_mkl_pardiso->maxfct = ival;
1082     else if(icntl == 67)
1083       mat_mkl_pardiso->mnum = ival;
1084     else if(icntl == 68)
1085       mat_mkl_pardiso->msglvl = ival;
1086     else if(icntl == 69){
1087       int pt[IPARM_SIZE];
1088       mat_mkl_pardiso->mtype = ival;
1089       MKL_PARDISO_INIT(&pt, &mat_mkl_pardiso->mtype, mat_mkl_pardiso->iparm);
1090 #if defined(PETSC_USE_REAL_SINGLE)
1091       mat_mkl_pardiso->iparm[27] = 1;
1092 #else
1093       mat_mkl_pardiso->iparm[27] = 0;
1094 #endif
1095       mat_mkl_pardiso->iparm[34] = 1;
1096     }
1097   }
1098   PetscFunctionReturn(0);
1099 }
1100 
1101 #undef __FUNCT__
1102 #define __FUNCT__ "MatMkl_PardisoSetCntl"
1103 /*@
1104   MatMkl_PardisoSetCntl - Set Mkl_Pardiso parameters
1105 
1106    Logically Collective on Mat
1107 
1108    Input Parameters:
1109 +  F - the factored matrix obtained by calling MatGetFactor()
1110 .  icntl - index of Mkl_Pardiso parameter
1111 -  ival - value of Mkl_Pardiso parameter
1112 
1113   Options Database:
1114 .   -mat_mkl_pardiso_<icntl> <ival>
1115 
1116    Level: beginner
1117 
1118    References: Mkl_Pardiso Users' Guide
1119 
1120 .seealso: MatGetFactor()
1121 @*/
1122 PetscErrorCode MatMkl_PardisoSetCntl(Mat F,PetscInt icntl,PetscInt ival)
1123 {
1124   PetscErrorCode ierr;
1125 
1126   PetscFunctionBegin;
1127   ierr = PetscTryMethod(F,"MatMkl_PardisoSetCntl_C",(Mat,PetscInt,PetscInt),(F,icntl,ival));CHKERRQ(ierr);
1128   PetscFunctionReturn(0);
1129 }
1130 
1131 /*MC
1132   MATSOLVERMKL_PARDISO -  A matrix type providing direct solvers (LU) for
1133   sequential matrices via the external package MKL_PARDISO.
1134 
1135   Works with MATSEQAIJ matrices
1136 
1137   Use -pc_type lu -pc_factor_mat_solver_package mkl_pardiso to us this direct solver
1138 
1139   Options Database Keys:
1140 + -mat_mkl_pardiso_65 - Number of threads to use
1141 . -mat_mkl_pardiso_66 - Maximum number of factors with identical sparsity structure that must be kept in memory at the same time
1142 . -mat_mkl_pardiso_67 - Indicates the actual matrix for the solution phase
1143 . -mat_mkl_pardiso_68 - Message level information
1144 . -mat_mkl_pardiso_69 - Defines the matrix type. IMPORTANT: When you set this flag, iparm parameters are going to be set to the default ones for the matrix type
1145 . -mat_mkl_pardiso_1 - Use default values
1146 . -mat_mkl_pardiso_2 - Fill-in reducing ordering for the input matrix
1147 . -mat_mkl_pardiso_4 - Preconditioned CGS/CG
1148 . -mat_mkl_pardiso_5 - User permutation
1149 . -mat_mkl_pardiso_6 - Write solution on x
1150 . -mat_mkl_pardiso_8 - Iterative refinement step
1151 . -mat_mkl_pardiso_10 - Pivoting perturbation
1152 . -mat_mkl_pardiso_11 - Scaling vectors
1153 . -mat_mkl_pardiso_12 - Solve with transposed or conjugate transposed matrix A
1154 . -mat_mkl_pardiso_13 - Improved accuracy using (non-) symmetric weighted matching
1155 . -mat_mkl_pardiso_18 - Numbers of non-zero elements
1156 . -mat_mkl_pardiso_19 - Report number of floating point operations
1157 . -mat_mkl_pardiso_21 - Pivoting for symmetric indefinite matrices
1158 . -mat_mkl_pardiso_24 - Parallel factorization control
1159 . -mat_mkl_pardiso_25 - Parallel forward/backward solve control
1160 . -mat_mkl_pardiso_27 - Matrix checker
1161 . -mat_mkl_pardiso_31 - Partial solve and computing selected components of the solution vectors
1162 . -mat_mkl_pardiso_34 - Optimal number of threads for conditional numerical reproducibility (CNR) mode
1163 - -mat_mkl_pardiso_60 - Intel MKL_PARDISO mode
1164 
1165   Level: beginner
1166 
1167   For more information please check  mkl_pardiso manual
1168 
1169 .seealso: PCFactorSetMatSolverPackage(), MatSolverPackage
1170 
1171 M*/
1172 #undef __FUNCT__
1173 #define __FUNCT__ "MatFactorGetSolverPackage_mkl_pardiso"
1174 static PetscErrorCode MatFactorGetSolverPackage_mkl_pardiso(Mat A, const MatSolverPackage *type)
1175 {
1176   PetscFunctionBegin;
1177   *type = MATSOLVERMKL_PARDISO;
1178   PetscFunctionReturn(0);
1179 }
1180 
1181 /* MatGetFactor for Seq sbAIJ matrices */
1182 #undef __FUNCT__
1183 #define __FUNCT__ "MatGetFactor_sbaij_mkl_pardiso"
1184 PETSC_EXTERN PetscErrorCode MatGetFactor_sbaij_mkl_pardiso(Mat A,MatFactorType ftype,Mat *F)
1185 {
1186   Mat             B;
1187   PetscErrorCode  ierr;
1188   Mat_MKL_PARDISO *mat_mkl_pardiso;
1189   PetscBool       isSeqSBAIJ;
1190   PetscInt        bs;
1191 
1192   PetscFunctionBegin;
1193   /* Create the factorization matrix */
1194   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQSBAIJ,&isSeqSBAIJ);CHKERRQ(ierr);
1195   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1196   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1197   ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1198   ierr = MatSeqSBAIJSetPreallocation(B,1,0,NULL);CHKERRQ(ierr);
1199   ierr = MatGetBlockSize(A,&bs); CHKERRQ(ierr);
1200 
1201   if(bs != 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrice MATSEQSBAIJ with block size other than 1 is not supported by Pardiso");
1202   if(ftype != MAT_FACTOR_CHOLESKY) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Matrice MATSEQAIJ should be used only with MAT_FACTOR_CHOLESKY.");
1203 
1204   B->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_AIJMKL_PARDISO;
1205   B->factortype                  = MAT_FACTOR_CHOLESKY;
1206   B->ops->destroy                = MatDestroy_MKL_PARDISO;
1207   B->ops->view                   = MatView_MKL_PARDISO;
1208   B->factortype                  = ftype;
1209   B->ops->getinfo                = MatGetInfo_MKL_PARDISO;
1210   B->assembled                   = PETSC_TRUE;           /* required by -ksp_view */
1211 
1212   ierr = PetscNewLog(B,&mat_mkl_pardiso);CHKERRQ(ierr);
1213   B->spptr = mat_mkl_pardiso;
1214   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C",MatFactorGetSolverPackage_mkl_pardiso);CHKERRQ(ierr);
1215   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSetSchurIS_C",MatFactorSetSchurIS_MKL_PARDISO);CHKERRQ(ierr);
1216   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorCreateSchurComplement_C",MatFactorCreateSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1217   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSchurComplement_C",MatFactorGetSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1218   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorInvertSchurComplement_C",MatFactorInvertSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1219   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSolveSchurComplement_C",MatFactorSolveSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1220   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSolveSchurComplementTranspose_C",MatFactorSolveSchurComplementTranspose_MKL_PARDISO);CHKERRQ(ierr);
1221   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMkl_PardisoSetCntl_C",MatMkl_PardisoSetCntl_MKL_PARDISO);CHKERRQ(ierr);
1222   ierr = MatFactorMKL_PARDISOInitialize_Private(A, ftype, mat_mkl_pardiso);CHKERRQ(ierr);
1223   *F = B;
1224   PetscFunctionReturn(0);
1225 }
1226 
1227 /* MatGetFactor for Seq AIJ matrices */
1228 #undef __FUNCT__
1229 #define __FUNCT__ "MatGetFactor_aij_mkl_pardiso"
1230 PETSC_EXTERN PetscErrorCode MatGetFactor_aij_mkl_pardiso(Mat A,MatFactorType ftype,Mat *F)
1231 {
1232   Mat             B;
1233   PetscErrorCode  ierr;
1234   Mat_MKL_PARDISO *mat_mkl_pardiso;
1235   PetscBool       isSeqAIJ;
1236 
1237   PetscFunctionBegin;
1238   /* Create the factorization matrix */
1239   ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&isSeqAIJ);CHKERRQ(ierr);
1240   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1241   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
1242   ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1243   ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
1244 
1245   if (ftype == MAT_FACTOR_LU) {
1246     B->ops->lufactorsymbolic = MatLUFactorSymbolic_AIJMKL_PARDISO;
1247     B->factortype            = MAT_FACTOR_LU;
1248   } else { /* this is still broken */
1249     B->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_AIJMKL_PARDISO;
1250     B->factortype                  = MAT_FACTOR_CHOLESKY;
1251   }
1252   B->ops->destroy          = MatDestroy_MKL_PARDISO;
1253   B->ops->view             = MatView_MKL_PARDISO;
1254   B->factortype            = ftype;
1255   B->ops->getinfo          = MatGetInfo_MKL_PARDISO;
1256   B->assembled             = PETSC_TRUE;           /* required by -ksp_view */
1257 
1258   ierr = PetscNewLog(B,&mat_mkl_pardiso);CHKERRQ(ierr);
1259   B->spptr = mat_mkl_pardiso;
1260   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C",MatFactorGetSolverPackage_mkl_pardiso);CHKERRQ(ierr);
1261   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSetSchurIS_C",MatFactorSetSchurIS_MKL_PARDISO);CHKERRQ(ierr);
1262   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorCreateSchurComplement_C",MatFactorCreateSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1263   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSchurComplement_C",MatFactorGetSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1264   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorInvertSchurComplement_C",MatFactorInvertSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1265   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSolveSchurComplement_C",MatFactorSolveSchurComplement_MKL_PARDISO);CHKERRQ(ierr);
1266   ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSolveSchurComplementTranspose_C",MatFactorSolveSchurComplementTranspose_MKL_PARDISO);CHKERRQ(ierr);
1267   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMkl_PardisoSetCntl_C",MatMkl_PardisoSetCntl_MKL_PARDISO);CHKERRQ(ierr);
1268   ierr = MatFactorMKL_PARDISOInitialize_Private(A, ftype, mat_mkl_pardiso);CHKERRQ(ierr);
1269 
1270   *F = B;
1271   PetscFunctionReturn(0);
1272 }
1273 
1274 #undef __FUNCT__
1275 #define __FUNCT__ "MatSolverPackageRegister_MKL_Pardiso"
1276 PETSC_EXTERN PetscErrorCode MatSolverPackageRegister_MKL_Pardiso(void)
1277 {
1278   PetscErrorCode ierr;
1279 
1280   PetscFunctionBegin;
1281   ierr = MatSolverPackageRegister(MATSOLVERMKL_PARDISO,MATSEQAIJ,MAT_FACTOR_LU,MatGetFactor_aij_mkl_pardiso);CHKERRQ(ierr);
1282   ierr = MatSolverPackageRegister(MATSOLVERMKL_PARDISO,MATSEQSBAIJ,MAT_FACTOR_CHOLESKY,MatGetFactor_sbaij_mkl_pardiso);CHKERRQ(ierr);
1283   PetscFunctionReturn(0);
1284 }
1285 
1286