1 #if defined(PETSC_HAVE_LIBMKL_INTEL_ILP64) 2 #define MKL_ILP64 3 #endif 4 5 #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 6 #include <../src/mat/impls/sbaij/seq/sbaij.h> 7 #include <../src/mat/impls/dense/seq/dense.h> 8 #include <petscblaslapack.h> 9 10 #include <stdio.h> 11 #include <stdlib.h> 12 #include <math.h> 13 #include <mkl.h> 14 15 /* 16 * Possible mkl_pardiso phases that controls the execution of the solver. 17 * For more information check mkl_pardiso manual. 18 */ 19 #define JOB_ANALYSIS 11 20 #define JOB_ANALYSIS_NUMERICAL_FACTORIZATION 12 21 #define JOB_ANALYSIS_NUMERICAL_FACTORIZATION_SOLVE_ITERATIVE_REFINEMENT 13 22 #define JOB_NUMERICAL_FACTORIZATION 22 23 #define JOB_NUMERICAL_FACTORIZATION_SOLVE_ITERATIVE_REFINEMENT 23 24 #define JOB_SOLVE_ITERATIVE_REFINEMENT 33 25 #define JOB_SOLVE_FORWARD_SUBSTITUTION 331 26 #define JOB_SOLVE_DIAGONAL_SUBSTITUTION 332 27 #define JOB_SOLVE_BACKWARD_SUBSTITUTION 333 28 #define JOB_RELEASE_OF_LU_MEMORY 0 29 #define JOB_RELEASE_OF_ALL_MEMORY -1 30 31 #define IPARM_SIZE 64 32 33 #if defined(PETSC_USE_64BIT_INDICES) 34 #if defined(PETSC_HAVE_LIBMKL_INTEL_ILP64) 35 /* sizeof(MKL_INT) == sizeof(long long int) if ilp64*/ 36 #define INT_TYPE long long int 37 #define MKL_PARDISO pardiso 38 #define MKL_PARDISO_INIT pardisoinit 39 #else 40 #define INT_TYPE long long int 41 #define MKL_PARDISO pardiso_64 42 #define MKL_PARDISO_INIT pardiso_64init 43 #endif 44 #else 45 #define INT_TYPE int 46 #define MKL_PARDISO pardiso 47 #define MKL_PARDISO_INIT pardisoinit 48 #endif 49 50 51 /* 52 * Internal data structure. 53 * For more information check mkl_pardiso manual. 54 */ 55 typedef struct { 56 57 /* Configuration vector*/ 58 INT_TYPE iparm[IPARM_SIZE]; 59 60 /* 61 * Internal mkl_pardiso memory location. 62 * After the first call to mkl_pardiso do not modify pt, as that could cause a serious memory leak. 63 */ 64 void *pt[IPARM_SIZE]; 65 66 /* Basic mkl_pardiso info*/ 67 INT_TYPE phase, maxfct, mnum, mtype, n, nrhs, msglvl, err; 68 69 /* Matrix structure*/ 70 void *a; 71 INT_TYPE *ia, *ja; 72 73 /* Number of non-zero elements*/ 74 INT_TYPE nz; 75 76 /* Row permutaton vector*/ 77 INT_TYPE *perm; 78 79 /* Define if matrix preserves sparse structure.*/ 80 MatStructure matstruc; 81 82 PetscBool needsym; 83 PetscBool freeaij; 84 85 /* Schur complement */ 86 PetscScalar *schur; 87 PetscInt schur_size; 88 PetscInt *schur_idxs; 89 PetscScalar *schur_work; 90 PetscBLASInt schur_work_size; 91 PetscInt schur_solver_type; 92 PetscInt *schur_pivots; 93 PetscBool schur_factored; 94 PetscBool schur_inverted; 95 PetscBool solve_interior; 96 97 /* True if mkl_pardiso function have been used.*/ 98 PetscBool CleanUp; 99 100 /* Conversion to a format suitable for MKL */ 101 PetscErrorCode (*Convert)(Mat, PetscBool, MatReuse, PetscBool*, INT_TYPE*, INT_TYPE**, INT_TYPE**, void**); 102 PetscErrorCode (*Destroy)(Mat); 103 } Mat_MKL_PARDISO; 104 105 #undef __FUNCT__ 106 #define __FUNCT__ "MatMKLPardiso_Convert_seqsbaij" 107 PetscErrorCode MatMKLPardiso_Convert_seqsbaij(Mat A,PetscBool sym,MatReuse reuse,PetscBool *free,INT_TYPE *nnz,INT_TYPE **r,INT_TYPE **c,void **v) 108 { 109 Mat_SeqSBAIJ *aa = (Mat_SeqSBAIJ*)A->data; 110 PetscInt bs = A->rmap->bs; 111 112 PetscFunctionBegin; 113 if (!sym) { 114 SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_PLIB,"This should not happen"); 115 } 116 if (bs == 1) { /* already in the correct format */ 117 *v = aa->a; 118 *r = aa->i; 119 *c = aa->j; 120 *nnz = aa->nz; 121 *free = PETSC_FALSE; 122 } else { 123 SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Conversion from SeqSBAIJ to MKL Pardiso format still need to be implemented"); 124 } 125 PetscFunctionReturn(0); 126 } 127 128 #undef __FUNCT__ 129 #define __FUNCT__ "MatMKLPardiso_Convert_seqbaij" 130 PetscErrorCode MatMKLPardiso_Convert_seqbaij(Mat A,PetscBool sym,MatReuse reuse,PetscBool *free,INT_TYPE *nnz,INT_TYPE **r,INT_TYPE **c,void **v) 131 { 132 Mat_SeqBAIJ *aa=(Mat_SeqBAIJ*)A->data; 133 PetscFunctionBegin; 134 SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Conversion from SeqBAIJ to MKL Pardiso format still need to be implemented"); 135 PetscFunctionReturn(0); 136 } 137 138 #undef __FUNCT__ 139 #define __FUNCT__ "MatMKLPardiso_Convert_seqaij" 140 PetscErrorCode MatMKLPardiso_Convert_seqaij(Mat A,PetscBool sym,MatReuse reuse,PetscBool *free,INT_TYPE *nnz,INT_TYPE **r,INT_TYPE **c,void **v) 141 { 142 Mat_SeqAIJ *aa = (Mat_SeqAIJ*)A->data; 143 PetscErrorCode ierr; 144 145 PetscFunctionBegin; 146 if (!sym) { /* already in the correct format */ 147 *v = aa->a; 148 *r = aa->i; 149 *c = aa->j; 150 *nnz = aa->nz; 151 *free = PETSC_FALSE; 152 PetscFunctionReturn(0); 153 } 154 /* need to get the triangular part */ 155 if (reuse == MAT_INITIAL_MATRIX) { 156 PetscScalar *vals,*vv; 157 PetscInt *row,*col,*jj; 158 PetscInt m = A->rmap->n,nz,i; 159 160 nz = 0; 161 for (i=0; i<m; i++) { 162 nz += aa->i[i+1] - aa->diag[i]; 163 } 164 ierr = PetscMalloc2(m+1,&row,nz,&col);CHKERRQ(ierr); 165 ierr = PetscMalloc1(nz,&vals);CHKERRQ(ierr); 166 jj = col; 167 vv = vals; 168 169 row[0] = 0; 170 for (i=0; i<m; i++) { 171 PetscInt *aj = aa->j + aa->diag[i]; 172 PetscScalar *av = aa->a + aa->diag[i]; 173 PetscInt rl = aa->i[i+1] - aa->diag[i],j; 174 for (j=0; j<rl; j++) { 175 *jj = *aj; jj++; aj++; 176 *vv = *av; vv++; av++; 177 } 178 row[i+1] = row[i] + rl; 179 } 180 *v = vals; 181 *r = row; 182 *c = col; 183 *nnz = nz; 184 *free = PETSC_TRUE; 185 } else { 186 PetscScalar *vv; 187 PetscInt m = A->rmap->n,i; 188 189 vv = *v; 190 for (i=0; i<m; i++) { 191 PetscInt *aj = aa->j + aa->diag[i]; 192 PetscScalar *av = aa->a + aa->diag[i]; 193 PetscInt rl = aa->i[i+1] - aa->diag[i],j; 194 for (j=0; j<rl; j++) { 195 *vv = *av; vv++; av++; 196 } 197 } 198 *free = PETSC_TRUE; 199 } 200 PetscFunctionReturn(0); 201 } 202 203 void pardiso_64init(void *pt, INT_TYPE *mtype, INT_TYPE iparm []) 204 { 205 int iparm_copy[IPARM_SIZE], mtype_copy, i; 206 207 mtype_copy = *mtype; 208 pardisoinit(pt, &mtype_copy, iparm_copy); 209 for(i = 0; i < IPARM_SIZE; i++){ 210 iparm[i] = iparm_copy[i]; 211 } 212 } 213 214 #undef __FUNCT__ 215 #define __FUNCT__ "MatMKLPardisoFactorSchur_Private" 216 static PetscErrorCode MatMKLPardisoFactorSchur_Private(Mat_MKL_PARDISO* mpardiso) 217 { 218 PetscBLASInt B_N,B_ierr; 219 PetscErrorCode ierr; 220 221 PetscFunctionBegin; 222 if (mpardiso->schur_factored) { 223 PetscFunctionReturn(0); 224 } 225 ierr = PetscBLASIntCast(mpardiso->schur_size,&B_N);CHKERRQ(ierr); 226 switch (mpardiso->schur_solver_type) { 227 case 1: /* symmetric */ 228 if (!mpardiso->schur_pivots) { 229 ierr = PetscMalloc1(B_N,&mpardiso->schur_pivots);CHKERRQ(ierr); 230 } 231 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 232 PetscStackCallBLAS("LAPACKsytrf",LAPACKsytrf_("L",&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,mpardiso->schur_work,&mpardiso->schur_work_size,&B_ierr)); 233 ierr = PetscFPTrapPop();CHKERRQ(ierr); 234 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRF Lapack routine %d",(int)B_ierr); 235 break; 236 case 2: /* hermitian solver */ 237 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 238 PetscStackCallBLAS("LAPACKpotrf",LAPACKpotrf_("L",&B_N,mpardiso->schur,&B_N,&B_ierr)); 239 ierr = PetscFPTrapPop();CHKERRQ(ierr); 240 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRF Lapack routine %d",(int)B_ierr); 241 break; 242 default: /* general */ 243 if (!mpardiso->schur_pivots) { 244 ierr = PetscMalloc1(B_N,&mpardiso->schur_pivots);CHKERRQ(ierr); 245 } 246 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 247 PetscStackCallBLAS("LAPACKgetrf",LAPACKgetrf_(&B_N,&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,&B_ierr)); 248 ierr = PetscFPTrapPop();CHKERRQ(ierr); 249 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRF Lapack routine %d",(int)B_ierr); 250 break; 251 } 252 mpardiso->schur_factored = PETSC_TRUE; 253 PetscFunctionReturn(0); 254 } 255 256 #undef __FUNCT__ 257 #define __FUNCT__ "MatMKLPardisoInvertSchur_Private" 258 static PetscErrorCode MatMKLPardisoInvertSchur_Private(Mat_MKL_PARDISO* mpardiso) 259 { 260 PetscBLASInt B_N,B_ierr; 261 PetscErrorCode ierr; 262 263 PetscFunctionBegin; 264 ierr = MatMKLPardisoFactorSchur_Private(mpardiso);CHKERRQ(ierr); 265 ierr = PetscBLASIntCast(mpardiso->schur_size,&B_N);CHKERRQ(ierr); 266 switch (mpardiso->schur_solver_type) { 267 case 1: /* symmetric */ 268 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 269 PetscStackCallBLAS("LAPACKsytri",LAPACKsytri_("L",&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,mpardiso->schur_work,&B_ierr)); 270 ierr = PetscFPTrapPop();CHKERRQ(ierr); 271 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRI Lapack routine %d",(int)B_ierr); 272 break; 273 case 2: /* hermitian solver */ 274 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 275 PetscStackCallBLAS("LAPACKpotri",LAPACKpotri_("L",&B_N,mpardiso->schur,&B_N,&B_ierr)); 276 ierr = PetscFPTrapPop();CHKERRQ(ierr); 277 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRI Lapack routine %d",(int)B_ierr); 278 break; 279 default: /* general */ 280 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 281 PetscStackCallBLAS("LAPACKgetri",LAPACKgetri_(&B_N,mpardiso->schur,&B_N,mpardiso->schur_pivots,mpardiso->schur_work,&mpardiso->schur_work_size,&B_ierr)); 282 ierr = PetscFPTrapPop();CHKERRQ(ierr); 283 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRI Lapack routine %d",(int)B_ierr); 284 break; 285 } 286 mpardiso->schur_inverted = PETSC_TRUE; 287 PetscFunctionReturn(0); 288 } 289 290 #undef __FUNCT__ 291 #define __FUNCT__ "MatMKLPardisoSolveSchur_Private" 292 static PetscErrorCode MatMKLPardisoSolveSchur_Private(Mat_MKL_PARDISO* mpardiso, PetscScalar *B, PetscScalar *X) 293 { 294 PetscScalar one=1.,zero=0.,*schur_rhs,*schur_sol; 295 PetscBLASInt B_N,B_Nrhs,B_ierr; 296 char type[2]; 297 PetscErrorCode ierr; 298 299 PetscFunctionBegin; 300 ierr = MatMKLPardisoFactorSchur_Private(mpardiso);CHKERRQ(ierr); 301 ierr = PetscBLASIntCast(mpardiso->schur_size,&B_N);CHKERRQ(ierr); 302 ierr = PetscBLASIntCast(mpardiso->nrhs,&B_Nrhs);CHKERRQ(ierr); 303 if (X == B && mpardiso->schur_inverted) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"X and B cannot point to the same address"); 304 if (X != B) { /* using LAPACK *TRS subroutines */ 305 ierr = PetscMemcpy(X,B,B_N*B_Nrhs*sizeof(PetscScalar));CHKERRQ(ierr); 306 } 307 schur_rhs = B; 308 schur_sol = X; 309 switch (mpardiso->schur_solver_type) { 310 case 1: /* symmetric solver */ 311 if (mpardiso->schur_inverted) { 312 PetscStackCallBLAS("BLASsymm",BLASsymm_("L","L",&B_N,&B_Nrhs,&one,mpardiso->schur,&B_N,schur_rhs,&B_N,&zero,schur_sol,&B_N)); 313 } else { 314 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 315 PetscStackCallBLAS("LAPACKsytrs",LAPACKsytrs_("L",&B_N,&B_Nrhs,mpardiso->schur,&B_N,mpardiso->schur_pivots,schur_sol,&B_N,&B_ierr)); 316 ierr = PetscFPTrapPop();CHKERRQ(ierr); 317 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in SYTRS Lapack routine %d",(int)B_ierr); 318 } 319 break; 320 case 2: /* hermitian solver */ 321 if (mpardiso->schur_inverted) { /* BLAShemm should go here */ 322 PetscStackCallBLAS("BLASsymm",BLASsymm_("L","L",&B_N,&B_Nrhs,&one,mpardiso->schur,&B_N,schur_rhs,&B_N,&zero,schur_sol,&B_N)); 323 } else { 324 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 325 PetscStackCallBLAS("LAPACKpotrs",LAPACKpotrs_("L",&B_N,&B_Nrhs,mpardiso->schur,&B_N,schur_sol,&B_N,&B_ierr)); 326 ierr = PetscFPTrapPop();CHKERRQ(ierr); 327 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in POTRS Lapack routine %d",(int)B_ierr); 328 } 329 break; 330 default: /* general */ 331 switch (mpardiso->iparm[12-1]) { 332 case 1: 333 sprintf(type,"C"); 334 break; 335 case 2: 336 sprintf(type,"T"); 337 break; 338 default: 339 sprintf(type,"N"); 340 break; 341 } 342 if (mpardiso->schur_inverted) { 343 PetscStackCallBLAS("BLASgemm",BLASgemm_(type,"N",&B_N,&B_Nrhs,&B_N,&one,mpardiso->schur,&B_N,schur_rhs,&B_N,&zero,schur_sol,&B_N)); 344 } else { 345 ierr = PetscFPTrapPush(PETSC_FP_TRAP_OFF);CHKERRQ(ierr); 346 PetscStackCallBLAS("LAPACKgetrs",LAPACKgetrs_(type,&B_N,&B_Nrhs,mpardiso->schur,&B_N,mpardiso->schur_pivots,schur_sol,&B_N,&B_ierr)); 347 ierr = PetscFPTrapPop();CHKERRQ(ierr); 348 if (B_ierr) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in GETRS Lapack routine %d",(int)B_ierr); 349 } 350 break; 351 } 352 PetscFunctionReturn(0); 353 } 354 355 356 #undef __FUNCT__ 357 #define __FUNCT__ "MatFactorSetSchurIS_MKL_PARDISO" 358 PetscErrorCode MatFactorSetSchurIS_MKL_PARDISO(Mat F, IS is) 359 { 360 Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr; 361 const PetscInt *idxs; 362 PetscInt size,i; 363 PetscMPIInt csize; 364 PetscBool sorted; 365 PetscErrorCode ierr; 366 367 PetscFunctionBegin; 368 ierr = MPI_Comm_size(PetscObjectComm((PetscObject)F),&csize);CHKERRQ(ierr); 369 if (csize > 1) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MKL_PARDISO parallel Schur complements not yet supported from PETSc\n"); 370 ierr = ISSorted(is,&sorted);CHKERRQ(ierr); 371 if (!sorted) { 372 SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"IS for MKL_PARDISO Schur complements needs to be sorted\n"); 373 } 374 ierr = ISGetLocalSize(is,&size);CHKERRQ(ierr); 375 if (mpardiso->schur_size != size) { 376 mpardiso->schur_size = size; 377 ierr = PetscFree2(mpardiso->schur,mpardiso->schur_work);CHKERRQ(ierr); 378 ierr = PetscFree(mpardiso->schur_idxs);CHKERRQ(ierr); 379 ierr = PetscFree(mpardiso->schur_pivots);CHKERRQ(ierr); 380 ierr = PetscBLASIntCast(PetscMax(mpardiso->n,2*size),&mpardiso->schur_work_size);CHKERRQ(ierr); 381 ierr = PetscMalloc2(size*size,&mpardiso->schur,mpardiso->schur_work_size,&mpardiso->schur_work);CHKERRQ(ierr); 382 ierr = PetscMalloc1(size,&mpardiso->schur_idxs);CHKERRQ(ierr); 383 } 384 ierr = PetscMemzero(mpardiso->perm,mpardiso->n*sizeof(INT_TYPE));CHKERRQ(ierr); 385 ierr = ISGetIndices(is,&idxs);CHKERRQ(ierr); 386 ierr = PetscMemcpy(mpardiso->schur_idxs,idxs,size*sizeof(PetscInt));CHKERRQ(ierr); 387 for (i=0;i<size;i++) mpardiso->perm[idxs[i]] = 1; 388 ierr = ISRestoreIndices(is,&idxs);CHKERRQ(ierr); 389 if (size) { /* turn on Schur switch if we the set of indices is not empty */ 390 mpardiso->iparm[36-1] = 2; 391 } 392 mpardiso->schur_factored = PETSC_FALSE; 393 mpardiso->schur_inverted = PETSC_FALSE; 394 PetscFunctionReturn(0); 395 } 396 397 #undef __FUNCT__ 398 #define __FUNCT__ "MatFactorCreateSchurComplement_MKL_PARDISO" 399 PetscErrorCode MatFactorCreateSchurComplement_MKL_PARDISO(Mat F,Mat* S) 400 { 401 Mat St; 402 Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr; 403 PetscScalar *array; 404 PetscErrorCode ierr; 405 406 PetscFunctionBegin; 407 if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it"); 408 else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before"); 409 410 ierr = MatCreate(PetscObjectComm((PetscObject)F),&St);CHKERRQ(ierr); 411 ierr = MatSetSizes(St,PETSC_DECIDE,PETSC_DECIDE,mpardiso->schur_size,mpardiso->schur_size);CHKERRQ(ierr); 412 ierr = MatSetType(St,MATDENSE);CHKERRQ(ierr); 413 ierr = MatSetUp(St);CHKERRQ(ierr); 414 ierr = MatDenseGetArray(St,&array);CHKERRQ(ierr); 415 ierr = PetscMemcpy(array,mpardiso->schur,mpardiso->schur_size*mpardiso->schur_size*sizeof(PetscScalar));CHKERRQ(ierr); 416 ierr = MatDenseRestoreArray(St,&array);CHKERRQ(ierr); 417 *S = St; 418 PetscFunctionReturn(0); 419 } 420 421 #undef __FUNCT__ 422 #define __FUNCT__ "MatFactorGetSchurComplement_MKL_PARDISO" 423 PetscErrorCode MatFactorGetSchurComplement_MKL_PARDISO(Mat F,Mat* S) 424 { 425 Mat St; 426 Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr; 427 PetscErrorCode ierr; 428 429 PetscFunctionBegin; 430 if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it"); 431 else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before"); 432 433 ierr = MatCreateSeqDense(PetscObjectComm((PetscObject)F),mpardiso->schur_size,mpardiso->schur_size,mpardiso->schur,&St);CHKERRQ(ierr); 434 *S = St; 435 PetscFunctionReturn(0); 436 } 437 438 #undef __FUNCT__ 439 #define __FUNCT__ "MatFactorInvertSchurComplement_MKL_PARDISO" 440 PetscErrorCode MatFactorInvertSchurComplement_MKL_PARDISO(Mat F) 441 { 442 Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr; 443 PetscErrorCode ierr; 444 445 PetscFunctionBegin; 446 if (!mpardiso->iparm[36-1]) { /* do nothing */ 447 PetscFunctionReturn(0); 448 } 449 if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before"); 450 ierr = MatMKLPardisoInvertSchur_Private(mpardiso);CHKERRQ(ierr); 451 PetscFunctionReturn(0); 452 } 453 454 #undef __FUNCT__ 455 #define __FUNCT__ "MatFactorSolveSchurComplement_MKL_PARDISO" 456 PetscErrorCode MatFactorSolveSchurComplement_MKL_PARDISO(Mat F, Vec rhs, Vec sol) 457 { 458 Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr; 459 PetscScalar *asol,*arhs; 460 PetscErrorCode ierr; 461 462 PetscFunctionBegin; 463 if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it"); 464 else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before"); 465 466 mpardiso->nrhs = 1; 467 ierr = VecGetArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr); 468 ierr = VecGetArray(sol,&asol);CHKERRQ(ierr); 469 ierr = MatMKLPardisoSolveSchur_Private(mpardiso,arhs,asol);CHKERRQ(ierr); 470 ierr = VecRestoreArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr); 471 ierr = VecRestoreArray(sol,&asol);CHKERRQ(ierr); 472 PetscFunctionReturn(0); 473 } 474 475 #undef __FUNCT__ 476 #define __FUNCT__ "MatFactorSolveSchurComplementTranspose_MKL_PARDISO" 477 PetscErrorCode MatFactorSolveSchurComplementTranspose_MKL_PARDISO(Mat F, Vec rhs, Vec sol) 478 { 479 Mat_MKL_PARDISO *mpardiso =(Mat_MKL_PARDISO*)F->spptr; 480 PetscScalar *asol,*arhs; 481 PetscErrorCode ierr; 482 483 PetscFunctionBegin; 484 if (!mpardiso->iparm[36-1]) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur complement mode not selected! You should call MatFactorSetSchurIS to enable it"); 485 else if (!mpardiso->schur_size) SETERRQ(PetscObjectComm((PetscObject)F),PETSC_ERR_ORDER,"Schur indices not set! You should call MatFactorSetSchurIS before"); 486 487 mpardiso->nrhs = 1; 488 ierr = VecGetArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr); 489 ierr = VecGetArray(sol,&asol);CHKERRQ(ierr); 490 mpardiso->iparm[12 - 1] = 2; 491 ierr = MatMKLPardisoSolveSchur_Private(mpardiso,arhs,asol);CHKERRQ(ierr); 492 mpardiso->iparm[12 - 1] = 0; 493 ierr = VecRestoreArrayRead(rhs,(const PetscScalar**)&arhs);CHKERRQ(ierr); 494 ierr = VecRestoreArray(sol,&asol);CHKERRQ(ierr); 495 PetscFunctionReturn(0); 496 } 497 498 #undef __FUNCT__ 499 #define __FUNCT__ "MatDestroy_MKL_PARDISO" 500 PetscErrorCode MatDestroy_MKL_PARDISO(Mat A) 501 { 502 Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)A->spptr; 503 PetscErrorCode ierr; 504 505 PetscFunctionBegin; 506 if (mat_mkl_pardiso->CleanUp) { 507 mat_mkl_pardiso->phase = JOB_RELEASE_OF_ALL_MEMORY; 508 509 MKL_PARDISO (mat_mkl_pardiso->pt, 510 &mat_mkl_pardiso->maxfct, 511 &mat_mkl_pardiso->mnum, 512 &mat_mkl_pardiso->mtype, 513 &mat_mkl_pardiso->phase, 514 &mat_mkl_pardiso->n, 515 NULL, 516 NULL, 517 NULL, 518 mat_mkl_pardiso->perm, 519 &mat_mkl_pardiso->nrhs, 520 mat_mkl_pardiso->iparm, 521 &mat_mkl_pardiso->msglvl, 522 NULL, 523 NULL, 524 &mat_mkl_pardiso->err); 525 } 526 ierr = PetscFree(mat_mkl_pardiso->perm);CHKERRQ(ierr); 527 ierr = PetscFree2(mat_mkl_pardiso->schur,mat_mkl_pardiso->schur_work);CHKERRQ(ierr); 528 ierr = PetscFree(mat_mkl_pardiso->schur_idxs);CHKERRQ(ierr); 529 ierr = PetscFree(mat_mkl_pardiso->schur_pivots);CHKERRQ(ierr); 530 if (mat_mkl_pardiso->freeaij) { 531 ierr = PetscFree2(mat_mkl_pardiso->ia,mat_mkl_pardiso->ja);CHKERRQ(ierr); 532 ierr = PetscFree(mat_mkl_pardiso->a);CHKERRQ(ierr); 533 } 534 if (mat_mkl_pardiso->Destroy) { 535 ierr = (mat_mkl_pardiso->Destroy)(A);CHKERRQ(ierr); 536 } 537 ierr = PetscFree(A->spptr);CHKERRQ(ierr); 538 539 /* clear composed functions */ 540 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSolverPackage_C",NULL);CHKERRQ(ierr); 541 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorSetSchurIS_C",NULL);CHKERRQ(ierr); 542 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorCreateSchurComplement_C",NULL);CHKERRQ(ierr); 543 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorGetSchurComplement_C",NULL);CHKERRQ(ierr); 544 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorInvertSchurComplement_C",NULL);CHKERRQ(ierr); 545 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorSolveSchurComplement_C",NULL);CHKERRQ(ierr); 546 ierr = PetscObjectComposeFunction((PetscObject)A,"MatFactorSolveSchurComplementTranspose_C",NULL);CHKERRQ(ierr); 547 ierr = PetscObjectComposeFunction((PetscObject)A,"MatMkl_PardisoSetCntl_C",NULL);CHKERRQ(ierr); 548 PetscFunctionReturn(0); 549 } 550 551 #undef __FUNCT__ 552 #define __FUNCT__ "MatMKLPardisoScatterSchur_Private" 553 static PetscErrorCode MatMKLPardisoScatterSchur_Private(Mat_MKL_PARDISO *mpardiso, PetscScalar *whole, PetscScalar *schur, PetscBool reduce) 554 { 555 PetscFunctionBegin; 556 if (reduce) { /* data given for the whole matrix */ 557 PetscInt i,m=0,p=0; 558 for (i=0;i<mpardiso->nrhs;i++) { 559 PetscInt j; 560 for (j=0;j<mpardiso->schur_size;j++) { 561 schur[p+j] = whole[m+mpardiso->schur_idxs[j]]; 562 } 563 m += mpardiso->n; 564 p += mpardiso->schur_size; 565 } 566 } else { /* from Schur to whole */ 567 PetscInt i,m=0,p=0; 568 for (i=0;i<mpardiso->nrhs;i++) { 569 PetscInt j; 570 for (j=0;j<mpardiso->schur_size;j++) { 571 whole[m+mpardiso->schur_idxs[j]] = schur[p+j]; 572 } 573 m += mpardiso->n; 574 p += mpardiso->schur_size; 575 } 576 } 577 PetscFunctionReturn(0); 578 } 579 580 #undef __FUNCT__ 581 #define __FUNCT__ "MatSolve_MKL_PARDISO" 582 PetscErrorCode MatSolve_MKL_PARDISO(Mat A,Vec b,Vec x) 583 { 584 Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)(A)->spptr; 585 PetscErrorCode ierr; 586 PetscScalar *xarray; 587 const PetscScalar *barray; 588 589 PetscFunctionBegin; 590 mat_mkl_pardiso->nrhs = 1; 591 ierr = VecGetArray(x,&xarray);CHKERRQ(ierr); 592 ierr = VecGetArrayRead(b,&barray);CHKERRQ(ierr); 593 594 if (!mat_mkl_pardiso->schur) { 595 mat_mkl_pardiso->phase = JOB_SOLVE_ITERATIVE_REFINEMENT; 596 } else { 597 mat_mkl_pardiso->phase = JOB_SOLVE_FORWARD_SUBSTITUTION; 598 } 599 mat_mkl_pardiso->iparm[6-1] = 0; 600 601 MKL_PARDISO (mat_mkl_pardiso->pt, 602 &mat_mkl_pardiso->maxfct, 603 &mat_mkl_pardiso->mnum, 604 &mat_mkl_pardiso->mtype, 605 &mat_mkl_pardiso->phase, 606 &mat_mkl_pardiso->n, 607 mat_mkl_pardiso->a, 608 mat_mkl_pardiso->ia, 609 mat_mkl_pardiso->ja, 610 mat_mkl_pardiso->perm, 611 &mat_mkl_pardiso->nrhs, 612 mat_mkl_pardiso->iparm, 613 &mat_mkl_pardiso->msglvl, 614 (void*)barray, 615 (void*)xarray, 616 &mat_mkl_pardiso->err); 617 618 if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err); 619 620 if (mat_mkl_pardiso->schur) { /* solve Schur complement and expand solution */ 621 PetscInt shift = mat_mkl_pardiso->schur_size; 622 623 /* if inverted, uses BLAS *MM subroutines, otherwise LAPACK *TRS */ 624 if (!mat_mkl_pardiso->schur_inverted) { 625 shift = 0; 626 } 627 628 if (!mat_mkl_pardiso->solve_interior) { 629 /* solve Schur complement */ 630 ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work,PETSC_TRUE);CHKERRQ(ierr); 631 ierr = MatMKLPardisoSolveSchur_Private(mat_mkl_pardiso,mat_mkl_pardiso->schur_work,mat_mkl_pardiso->schur_work+shift);CHKERRQ(ierr); 632 ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work+shift,PETSC_FALSE);CHKERRQ(ierr); 633 } else { /* if we are solving for the interior problem, any value in barray[schur] forward-substitued to xarray[schur] will be neglected */ 634 PetscInt i; 635 for (i=0;i<mat_mkl_pardiso->schur_size;i++) { 636 xarray[mat_mkl_pardiso->schur_idxs[i]] = 0.; 637 } 638 } 639 /* expansion phase */ 640 mat_mkl_pardiso->iparm[6-1] = 1; 641 mat_mkl_pardiso->phase = JOB_SOLVE_BACKWARD_SUBSTITUTION; 642 MKL_PARDISO (mat_mkl_pardiso->pt, 643 &mat_mkl_pardiso->maxfct, 644 &mat_mkl_pardiso->mnum, 645 &mat_mkl_pardiso->mtype, 646 &mat_mkl_pardiso->phase, 647 &mat_mkl_pardiso->n, 648 mat_mkl_pardiso->a, 649 mat_mkl_pardiso->ia, 650 mat_mkl_pardiso->ja, 651 mat_mkl_pardiso->perm, 652 &mat_mkl_pardiso->nrhs, 653 mat_mkl_pardiso->iparm, 654 &mat_mkl_pardiso->msglvl, 655 (void*)xarray, 656 (void*)mat_mkl_pardiso->schur_work, /* according to the specs, the solution vector is always used */ 657 &mat_mkl_pardiso->err); 658 659 if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err); 660 mat_mkl_pardiso->iparm[6-1] = 0; 661 } 662 ierr = VecRestoreArray(x,&xarray);CHKERRQ(ierr); 663 ierr = VecRestoreArrayRead(b,&barray);CHKERRQ(ierr); 664 mat_mkl_pardiso->CleanUp = PETSC_TRUE; 665 PetscFunctionReturn(0); 666 } 667 668 #undef __FUNCT__ 669 #define __FUNCT__ "MatSolveTranspose_MKL_PARDISO" 670 PetscErrorCode MatSolveTranspose_MKL_PARDISO(Mat A,Vec b,Vec x) 671 { 672 Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)A->spptr; 673 PetscErrorCode ierr; 674 675 PetscFunctionBegin; 676 #if defined(PETSC_USE_COMPLEX) 677 mat_mkl_pardiso->iparm[12 - 1] = 1; 678 #else 679 mat_mkl_pardiso->iparm[12 - 1] = 2; 680 #endif 681 ierr = MatSolve_MKL_PARDISO(A,b,x);CHKERRQ(ierr); 682 mat_mkl_pardiso->iparm[12 - 1] = 0; 683 PetscFunctionReturn(0); 684 } 685 686 #undef __FUNCT__ 687 #define __FUNCT__ "MatMatSolve_MKL_PARDISO" 688 PetscErrorCode MatMatSolve_MKL_PARDISO(Mat A,Mat B,Mat X) 689 { 690 Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)(A)->spptr; 691 PetscErrorCode ierr; 692 PetscScalar *barray, *xarray; 693 PetscBool flg; 694 695 PetscFunctionBegin; 696 ierr = PetscObjectTypeCompare((PetscObject)B,MATSEQDENSE,&flg);CHKERRQ(ierr); 697 if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix B must be MATSEQDENSE matrix"); 698 ierr = PetscObjectTypeCompare((PetscObject)X,MATSEQDENSE,&flg);CHKERRQ(ierr); 699 if (!flg) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Matrix X must be MATSEQDENSE matrix"); 700 701 ierr = MatGetSize(B,NULL,(PetscInt*)&mat_mkl_pardiso->nrhs);CHKERRQ(ierr); 702 703 if(mat_mkl_pardiso->nrhs > 0){ 704 ierr = MatDenseGetArray(B,&barray); 705 ierr = MatDenseGetArray(X,&xarray); 706 707 if (!mat_mkl_pardiso->schur) { 708 mat_mkl_pardiso->phase = JOB_SOLVE_ITERATIVE_REFINEMENT; 709 } else { 710 mat_mkl_pardiso->phase = JOB_SOLVE_FORWARD_SUBSTITUTION; 711 } 712 mat_mkl_pardiso->iparm[6-1] = 0; 713 714 MKL_PARDISO (mat_mkl_pardiso->pt, 715 &mat_mkl_pardiso->maxfct, 716 &mat_mkl_pardiso->mnum, 717 &mat_mkl_pardiso->mtype, 718 &mat_mkl_pardiso->phase, 719 &mat_mkl_pardiso->n, 720 mat_mkl_pardiso->a, 721 mat_mkl_pardiso->ia, 722 mat_mkl_pardiso->ja, 723 mat_mkl_pardiso->perm, 724 &mat_mkl_pardiso->nrhs, 725 mat_mkl_pardiso->iparm, 726 &mat_mkl_pardiso->msglvl, 727 (void*)barray, 728 (void*)xarray, 729 &mat_mkl_pardiso->err); 730 if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err); 731 732 if (mat_mkl_pardiso->schur) { /* solve Schur complement and expand solution */ 733 PetscScalar *o_schur_work = NULL; 734 PetscInt shift = mat_mkl_pardiso->schur_size*mat_mkl_pardiso->nrhs,scale; 735 PetscInt mem = mat_mkl_pardiso->n*mat_mkl_pardiso->nrhs; 736 737 /* allocate extra memory if it is needed */ 738 scale = 1; 739 if (mat_mkl_pardiso->schur_inverted) { 740 scale = 2; 741 } 742 mem *= scale; 743 if (mem > mat_mkl_pardiso->schur_work_size) { 744 o_schur_work = mat_mkl_pardiso->schur_work; 745 ierr = PetscMalloc1(mem,&mat_mkl_pardiso->schur_work);CHKERRQ(ierr); 746 } 747 748 /* if inverted, uses BLAS *MM subroutines, otherwise LAPACK *TRS */ 749 if (!mat_mkl_pardiso->schur_inverted) { 750 shift = 0; 751 } 752 753 /* solve Schur complement */ 754 if (!mat_mkl_pardiso->solve_interior) { 755 ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work,PETSC_TRUE);CHKERRQ(ierr); 756 ierr = MatMKLPardisoSolveSchur_Private(mat_mkl_pardiso,mat_mkl_pardiso->schur_work,mat_mkl_pardiso->schur_work+shift);CHKERRQ(ierr); 757 ierr = MatMKLPardisoScatterSchur_Private(mat_mkl_pardiso,xarray,mat_mkl_pardiso->schur_work+shift,PETSC_FALSE);CHKERRQ(ierr); 758 } else { /* if we are solving for the interior problem, any value in barray[schur,n] forward-substitued to xarray[schur,n] will be neglected */ 759 PetscInt i,n,m=0; 760 for (n=0;n<mat_mkl_pardiso->nrhs;n++) { 761 for (i=0;i<mat_mkl_pardiso->schur_size;i++) { 762 xarray[mat_mkl_pardiso->schur_idxs[i]+m] = 0.; 763 } 764 m += mat_mkl_pardiso->n; 765 } 766 } 767 /* expansion phase */ 768 mat_mkl_pardiso->iparm[6-1] = 1; 769 mat_mkl_pardiso->phase = JOB_SOLVE_BACKWARD_SUBSTITUTION; 770 MKL_PARDISO (mat_mkl_pardiso->pt, 771 &mat_mkl_pardiso->maxfct, 772 &mat_mkl_pardiso->mnum, 773 &mat_mkl_pardiso->mtype, 774 &mat_mkl_pardiso->phase, 775 &mat_mkl_pardiso->n, 776 mat_mkl_pardiso->a, 777 mat_mkl_pardiso->ia, 778 mat_mkl_pardiso->ja, 779 mat_mkl_pardiso->perm, 780 &mat_mkl_pardiso->nrhs, 781 mat_mkl_pardiso->iparm, 782 &mat_mkl_pardiso->msglvl, 783 (void*)xarray, 784 (void*)mat_mkl_pardiso->schur_work, /* according to the specs, the solution vector is always used */ 785 &mat_mkl_pardiso->err); 786 if (o_schur_work) { /* restore original schur_work (minimal size) */ 787 ierr = PetscFree(mat_mkl_pardiso->schur_work);CHKERRQ(ierr); 788 mat_mkl_pardiso->schur_work = o_schur_work; 789 } 790 if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err); 791 mat_mkl_pardiso->iparm[6-1] = 0; 792 } 793 } 794 mat_mkl_pardiso->CleanUp = PETSC_TRUE; 795 PetscFunctionReturn(0); 796 } 797 798 #undef __FUNCT__ 799 #define __FUNCT__ "MatFactorNumeric_MKL_PARDISO" 800 PetscErrorCode MatFactorNumeric_MKL_PARDISO(Mat F,Mat A,const MatFactorInfo *info) 801 { 802 Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)(F)->spptr; 803 PetscErrorCode ierr; 804 805 PetscFunctionBegin; 806 mat_mkl_pardiso->matstruc = SAME_NONZERO_PATTERN; 807 ierr = (*mat_mkl_pardiso->Convert)(A,mat_mkl_pardiso->needsym,MAT_REUSE_MATRIX,&mat_mkl_pardiso->freeaij,&mat_mkl_pardiso->nz,&mat_mkl_pardiso->ia,&mat_mkl_pardiso->ja,&mat_mkl_pardiso->a);CHKERRQ(ierr); 808 809 mat_mkl_pardiso->phase = JOB_NUMERICAL_FACTORIZATION; 810 MKL_PARDISO (mat_mkl_pardiso->pt, 811 &mat_mkl_pardiso->maxfct, 812 &mat_mkl_pardiso->mnum, 813 &mat_mkl_pardiso->mtype, 814 &mat_mkl_pardiso->phase, 815 &mat_mkl_pardiso->n, 816 mat_mkl_pardiso->a, 817 mat_mkl_pardiso->ia, 818 mat_mkl_pardiso->ja, 819 mat_mkl_pardiso->perm, 820 &mat_mkl_pardiso->nrhs, 821 mat_mkl_pardiso->iparm, 822 &mat_mkl_pardiso->msglvl, 823 NULL, 824 (void*)mat_mkl_pardiso->schur, 825 &mat_mkl_pardiso->err); 826 if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d. Please check manual\n",mat_mkl_pardiso->err); 827 828 if (mat_mkl_pardiso->schur) { /* schur output from pardiso is in row major format */ 829 PetscInt j,k,n=mat_mkl_pardiso->schur_size; 830 if (!mat_mkl_pardiso->schur_solver_type) { 831 for (j=0; j<n; j++) { 832 for (k=0; k<j; k++) { 833 PetscScalar tmp = mat_mkl_pardiso->schur[j + k*n]; 834 mat_mkl_pardiso->schur[j + k*n] = mat_mkl_pardiso->schur[k + j*n]; 835 mat_mkl_pardiso->schur[k + j*n] = tmp; 836 } 837 } 838 } else { /* we could use row-major in LAPACK routines (e.g. use 'U' instead of 'L'; instead, I prefer consistency between data structures and swap to column major */ 839 for (j=0; j<n; j++) { 840 for (k=0; k<j; k++) { 841 mat_mkl_pardiso->schur[j + k*n] = mat_mkl_pardiso->schur[k + j*n]; 842 } 843 } 844 } 845 } 846 mat_mkl_pardiso->matstruc = SAME_NONZERO_PATTERN; 847 mat_mkl_pardiso->CleanUp = PETSC_TRUE; 848 mat_mkl_pardiso->schur_factored = PETSC_FALSE; 849 mat_mkl_pardiso->schur_inverted = PETSC_FALSE; 850 mat_mkl_pardiso->schur_solver_type = 0; 851 PetscFunctionReturn(0); 852 } 853 854 #undef __FUNCT__ 855 #define __FUNCT__ "PetscSetMKL_PARDISOFromOptions" 856 PetscErrorCode PetscSetMKL_PARDISOFromOptions(Mat F, Mat A) 857 { 858 Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO*)F->spptr; 859 PetscErrorCode ierr; 860 PetscInt icntl, threads = 1; 861 PetscBool flg; 862 863 PetscFunctionBegin; 864 ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)A),((PetscObject)A)->prefix,"MKL_PARDISO Options","Mat");CHKERRQ(ierr); 865 ierr = PetscOptionsInt("-mat_mkl_pardiso_65","Number of threads to use","None",threads,&threads,&flg);CHKERRQ(ierr); 866 if (flg) mkl_set_num_threads((int)threads); 867 868 ierr = PetscOptionsInt("-mat_mkl_pardiso_66","Maximum number of factors with identical sparsity structure that must be kept in memory at the same time","None",mat_mkl_pardiso->maxfct,&icntl,&flg);CHKERRQ(ierr); 869 if (flg) mat_mkl_pardiso->maxfct = icntl; 870 871 ierr = PetscOptionsInt("-mat_mkl_pardiso_67","Indicates the actual matrix for the solution phase","None",mat_mkl_pardiso->mnum,&icntl,&flg);CHKERRQ(ierr); 872 if (flg) mat_mkl_pardiso->mnum = icntl; 873 874 ierr = PetscOptionsInt("-mat_mkl_pardiso_68","Message level information","None",mat_mkl_pardiso->msglvl,&icntl,&flg);CHKERRQ(ierr); 875 if (flg) mat_mkl_pardiso->msglvl = icntl; 876 877 ierr = PetscOptionsInt("-mat_mkl_pardiso_69","Defines the matrix type","None",mat_mkl_pardiso->mtype,&icntl,&flg);CHKERRQ(ierr); 878 if(flg){ 879 void *pt[IPARM_SIZE]; 880 mat_mkl_pardiso->mtype = icntl; 881 MKL_PARDISO_INIT(pt, &mat_mkl_pardiso->mtype, mat_mkl_pardiso->iparm); 882 #if defined(PETSC_USE_REAL_SINGLE) 883 mat_mkl_pardiso->iparm[27] = 1; 884 #else 885 mat_mkl_pardiso->iparm[27] = 0; 886 #endif 887 mat_mkl_pardiso->iparm[34] = 1; /* use 0-based indexing */ 888 } 889 ierr = PetscOptionsInt("-mat_mkl_pardiso_1","Use default values","None",mat_mkl_pardiso->iparm[0],&icntl,&flg);CHKERRQ(ierr); 890 891 if(flg && icntl != 0){ 892 ierr = PetscOptionsInt("-mat_mkl_pardiso_2","Fill-in reducing ordering for the input matrix","None",mat_mkl_pardiso->iparm[1],&icntl,&flg);CHKERRQ(ierr); 893 if (flg) mat_mkl_pardiso->iparm[1] = icntl; 894 895 ierr = PetscOptionsInt("-mat_mkl_pardiso_4","Preconditioned CGS/CG","None",mat_mkl_pardiso->iparm[3],&icntl,&flg);CHKERRQ(ierr); 896 if (flg) mat_mkl_pardiso->iparm[3] = icntl; 897 898 ierr = PetscOptionsInt("-mat_mkl_pardiso_5","User permutation","None",mat_mkl_pardiso->iparm[4],&icntl,&flg);CHKERRQ(ierr); 899 if (flg) mat_mkl_pardiso->iparm[4] = icntl; 900 901 ierr = PetscOptionsInt("-mat_mkl_pardiso_6","Write solution on x","None",mat_mkl_pardiso->iparm[5],&icntl,&flg);CHKERRQ(ierr); 902 if (flg) mat_mkl_pardiso->iparm[5] = icntl; 903 904 ierr = PetscOptionsInt("-mat_mkl_pardiso_8","Iterative refinement step","None",mat_mkl_pardiso->iparm[7],&icntl,&flg);CHKERRQ(ierr); 905 if (flg) mat_mkl_pardiso->iparm[7] = icntl; 906 907 ierr = PetscOptionsInt("-mat_mkl_pardiso_10","Pivoting perturbation","None",mat_mkl_pardiso->iparm[9],&icntl,&flg);CHKERRQ(ierr); 908 if (flg) mat_mkl_pardiso->iparm[9] = icntl; 909 910 ierr = PetscOptionsInt("-mat_mkl_pardiso_11","Scaling vectors","None",mat_mkl_pardiso->iparm[10],&icntl,&flg);CHKERRQ(ierr); 911 if (flg) mat_mkl_pardiso->iparm[10] = icntl; 912 913 ierr = PetscOptionsInt("-mat_mkl_pardiso_12","Solve with transposed or conjugate transposed matrix A","None",mat_mkl_pardiso->iparm[11],&icntl,&flg);CHKERRQ(ierr); 914 if (flg) mat_mkl_pardiso->iparm[11] = icntl; 915 916 ierr = PetscOptionsInt("-mat_mkl_pardiso_13","Improved accuracy using (non-) symmetric weighted matching","None",mat_mkl_pardiso->iparm[12],&icntl,&flg);CHKERRQ(ierr); 917 if (flg) mat_mkl_pardiso->iparm[12] = icntl; 918 919 ierr = PetscOptionsInt("-mat_mkl_pardiso_18","Numbers of non-zero elements","None",mat_mkl_pardiso->iparm[17],&icntl,&flg);CHKERRQ(ierr); 920 if (flg) mat_mkl_pardiso->iparm[17] = icntl; 921 922 ierr = PetscOptionsInt("-mat_mkl_pardiso_19","Report number of floating point operations","None",mat_mkl_pardiso->iparm[18],&icntl,&flg);CHKERRQ(ierr); 923 if (flg) mat_mkl_pardiso->iparm[18] = icntl; 924 925 ierr = PetscOptionsInt("-mat_mkl_pardiso_21","Pivoting for symmetric indefinite matrices","None",mat_mkl_pardiso->iparm[20],&icntl,&flg);CHKERRQ(ierr); 926 if (flg) mat_mkl_pardiso->iparm[20] = icntl; 927 928 ierr = PetscOptionsInt("-mat_mkl_pardiso_24","Parallel factorization control","None",mat_mkl_pardiso->iparm[23],&icntl,&flg);CHKERRQ(ierr); 929 if (flg) mat_mkl_pardiso->iparm[23] = icntl; 930 931 ierr = PetscOptionsInt("-mat_mkl_pardiso_25","Parallel forward/backward solve control","None",mat_mkl_pardiso->iparm[24],&icntl,&flg);CHKERRQ(ierr); 932 if (flg) mat_mkl_pardiso->iparm[24] = icntl; 933 934 ierr = PetscOptionsInt("-mat_mkl_pardiso_27","Matrix checker","None",mat_mkl_pardiso->iparm[26],&icntl,&flg);CHKERRQ(ierr); 935 if (flg) mat_mkl_pardiso->iparm[26] = icntl; 936 937 ierr = PetscOptionsInt("-mat_mkl_pardiso_31","Partial solve and computing selected components of the solution vectors","None",mat_mkl_pardiso->iparm[30],&icntl,&flg);CHKERRQ(ierr); 938 if (flg) mat_mkl_pardiso->iparm[30] = icntl; 939 940 ierr = PetscOptionsInt("-mat_mkl_pardiso_34","Optimal number of threads for conditional numerical reproducibility (CNR) mode","None",mat_mkl_pardiso->iparm[33],&icntl,&flg);CHKERRQ(ierr); 941 if (flg) mat_mkl_pardiso->iparm[33] = icntl; 942 943 ierr = PetscOptionsInt("-mat_mkl_pardiso_60","Intel MKL_PARDISO mode","None",mat_mkl_pardiso->iparm[59],&icntl,&flg);CHKERRQ(ierr); 944 if (flg) mat_mkl_pardiso->iparm[59] = icntl; 945 } 946 PetscOptionsEnd(); 947 PetscFunctionReturn(0); 948 } 949 950 #undef __FUNCT__ 951 #define __FUNCT__ "MatFactorMKL_PARDISOInitialize_Private" 952 PetscErrorCode MatFactorMKL_PARDISOInitialize_Private(Mat A, MatFactorType ftype, Mat_MKL_PARDISO *mat_mkl_pardiso) 953 { 954 PetscErrorCode ierr; 955 PetscInt i; 956 957 PetscFunctionBegin; 958 for ( i = 0; i < IPARM_SIZE; i++ ){ 959 mat_mkl_pardiso->iparm[i] = 0; 960 } 961 for ( i = 0; i < IPARM_SIZE; i++ ){ 962 mat_mkl_pardiso->pt[i] = 0; 963 } 964 /* Default options for both sym and unsym */ 965 mat_mkl_pardiso->iparm[ 0] = 1; /* Solver default parameters overriden with provided by iparm */ 966 mat_mkl_pardiso->iparm[ 1] = 2; /* Metis reordering */ 967 mat_mkl_pardiso->iparm[ 5] = 0; /* Write solution into x */ 968 mat_mkl_pardiso->iparm[ 7] = 0; /* Max number of iterative refinement steps */ 969 mat_mkl_pardiso->iparm[17] = -1; /* Output: Number of nonzeros in the factor LU */ 970 mat_mkl_pardiso->iparm[18] = -1; /* Output: Mflops for LU factorization */ 971 #if 0 972 mat_mkl_pardiso->iparm[23] = 1; /* Parallel factorization control*/ 973 #endif 974 mat_mkl_pardiso->iparm[34] = 1; /* Cluster Sparse Solver use C-style indexing for ia and ja arrays */ 975 mat_mkl_pardiso->iparm[39] = 0; /* Input: matrix/rhs/solution stored on master */ 976 977 mat_mkl_pardiso->CleanUp = PETSC_FALSE; 978 mat_mkl_pardiso->maxfct = 1; /* Maximum number of numerical factorizations. */ 979 mat_mkl_pardiso->mnum = 1; /* Which factorization to use. */ 980 mat_mkl_pardiso->msglvl = 0; /* 0: do not print 1: Print statistical information in file */ 981 mat_mkl_pardiso->phase = -1; 982 mat_mkl_pardiso->err = 0; 983 984 mat_mkl_pardiso->n = A->rmap->N; 985 mat_mkl_pardiso->nrhs = 1; 986 mat_mkl_pardiso->err = 0; 987 mat_mkl_pardiso->phase = -1; 988 989 if(ftype == MAT_FACTOR_LU){ 990 mat_mkl_pardiso->iparm[ 9] = 13; /* Perturb the pivot elements with 1E-13 */ 991 mat_mkl_pardiso->iparm[10] = 1; /* Use nonsymmetric permutation and scaling MPS */ 992 mat_mkl_pardiso->iparm[12] = 1; /* Switch on Maximum Weighted Matching algorithm (default for non-symmetric) */ 993 994 } else { 995 mat_mkl_pardiso->iparm[ 9] = 13; /* Perturb the pivot elements with 1E-13 */ 996 mat_mkl_pardiso->iparm[10] = 0; /* Use nonsymmetric permutation and scaling MPS */ 997 mat_mkl_pardiso->iparm[12] = 1; /* Switch on Maximum Weighted Matching algorithm (default for non-symmetric) */ 998 /* mat_mkl_pardiso->iparm[20] = 1; */ /* Apply 1x1 and 2x2 Bunch-Kaufman pivoting during the factorization process */ 999 #if defined(PETSC_USE_DEBUG) 1000 mat_mkl_pardiso->iparm[26] = 1; /* Matrix checker */ 1001 #endif 1002 } 1003 ierr = PetscMalloc1(A->rmap->N*sizeof(INT_TYPE), &mat_mkl_pardiso->perm);CHKERRQ(ierr); 1004 for(i = 0; i < A->rmap->N; i++){ 1005 mat_mkl_pardiso->perm[i] = 0; 1006 } 1007 mat_mkl_pardiso->schur_size = 0; 1008 PetscFunctionReturn(0); 1009 } 1010 1011 #undef __FUNCT__ 1012 #define __FUNCT__ "MatFactorSymbolic_AIJMKL_PARDISO_Private" 1013 PetscErrorCode MatFactorSymbolic_AIJMKL_PARDISO_Private(Mat F,Mat A,const MatFactorInfo *info) 1014 { 1015 Mat_MKL_PARDISO *mat_mkl_pardiso = (Mat_MKL_PARDISO*)F->spptr; 1016 PetscErrorCode ierr; 1017 1018 PetscFunctionBegin; 1019 mat_mkl_pardiso->matstruc = DIFFERENT_NONZERO_PATTERN; 1020 ierr = PetscSetMKL_PARDISOFromOptions(F,A);CHKERRQ(ierr); 1021 1022 /* throw away any previously computed structure */ 1023 if (mat_mkl_pardiso->freeaij) { 1024 ierr = PetscFree2(mat_mkl_pardiso->ia,mat_mkl_pardiso->ja);CHKERRQ(ierr); 1025 ierr = PetscFree(mat_mkl_pardiso->a);CHKERRQ(ierr); 1026 } 1027 ierr = (*mat_mkl_pardiso->Convert)(A,mat_mkl_pardiso->needsym,MAT_INITIAL_MATRIX,&mat_mkl_pardiso->freeaij,&mat_mkl_pardiso->nz,&mat_mkl_pardiso->ia,&mat_mkl_pardiso->ja,&mat_mkl_pardiso->a);CHKERRQ(ierr); 1028 mat_mkl_pardiso->n = A->rmap->N; 1029 1030 mat_mkl_pardiso->phase = JOB_ANALYSIS; 1031 1032 MKL_PARDISO (mat_mkl_pardiso->pt, 1033 &mat_mkl_pardiso->maxfct, 1034 &mat_mkl_pardiso->mnum, 1035 &mat_mkl_pardiso->mtype, 1036 &mat_mkl_pardiso->phase, 1037 &mat_mkl_pardiso->n, 1038 mat_mkl_pardiso->a, 1039 mat_mkl_pardiso->ia, 1040 mat_mkl_pardiso->ja, 1041 mat_mkl_pardiso->perm, 1042 &mat_mkl_pardiso->nrhs, 1043 mat_mkl_pardiso->iparm, 1044 &mat_mkl_pardiso->msglvl, 1045 NULL, 1046 NULL, 1047 &mat_mkl_pardiso->err); 1048 if (mat_mkl_pardiso->err < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error reported by MKL_PARDISO: err=%d\n. Please check manual",mat_mkl_pardiso->err); 1049 1050 mat_mkl_pardiso->CleanUp = PETSC_TRUE; 1051 1052 if (F->factortype == MAT_FACTOR_LU) { 1053 F->ops->lufactornumeric = MatFactorNumeric_MKL_PARDISO; 1054 } else { 1055 F->ops->choleskyfactornumeric = MatFactorNumeric_MKL_PARDISO; 1056 } 1057 F->ops->solve = MatSolve_MKL_PARDISO; 1058 F->ops->solvetranspose = MatSolveTranspose_MKL_PARDISO; 1059 F->ops->matsolve = MatMatSolve_MKL_PARDISO; 1060 PetscFunctionReturn(0); 1061 } 1062 1063 #undef __FUNCT__ 1064 #define __FUNCT__ "MatLUFactorSymbolic_AIJMKL_PARDISO" 1065 PetscErrorCode MatLUFactorSymbolic_AIJMKL_PARDISO(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 1066 { 1067 PetscErrorCode ierr; 1068 1069 PetscFunctionBegin; 1070 ierr = MatFactorSymbolic_AIJMKL_PARDISO_Private(F, A, info);CHKERRQ(ierr); 1071 PetscFunctionReturn(0); 1072 } 1073 1074 #undef __FUNCT__ 1075 #define __FUNCT__ "MatCholeskyFactorSymbolic_AIJMKL_PARDISO" 1076 PetscErrorCode MatCholeskyFactorSymbolic_AIJMKL_PARDISO(Mat F,Mat A,IS r,const MatFactorInfo *info) 1077 { 1078 PetscErrorCode ierr; 1079 1080 PetscFunctionBegin; 1081 ierr = MatFactorSymbolic_AIJMKL_PARDISO_Private(F, A, info);CHKERRQ(ierr); 1082 PetscFunctionReturn(0); 1083 } 1084 1085 #undef __FUNCT__ 1086 #define __FUNCT__ "MatView_MKL_PARDISO" 1087 PetscErrorCode MatView_MKL_PARDISO(Mat A, PetscViewer viewer) 1088 { 1089 PetscErrorCode ierr; 1090 PetscBool iascii; 1091 PetscViewerFormat format; 1092 Mat_MKL_PARDISO *mat_mkl_pardiso=(Mat_MKL_PARDISO*)A->spptr; 1093 PetscInt i; 1094 1095 PetscFunctionBegin; 1096 if (A->ops->solve != MatSolve_MKL_PARDISO) PetscFunctionReturn(0); 1097 1098 ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1099 if (iascii) { 1100 ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1101 if (format == PETSC_VIEWER_ASCII_INFO) { 1102 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO run parameters:\n");CHKERRQ(ierr); 1103 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO phase: %d \n",mat_mkl_pardiso->phase);CHKERRQ(ierr); 1104 for(i = 1; i <= 64; i++){ 1105 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO iparm[%d]: %d \n",i, mat_mkl_pardiso->iparm[i - 1]);CHKERRQ(ierr); 1106 } 1107 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO maxfct: %d \n", mat_mkl_pardiso->maxfct);CHKERRQ(ierr); 1108 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO mnum: %d \n", mat_mkl_pardiso->mnum);CHKERRQ(ierr); 1109 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO mtype: %d \n", mat_mkl_pardiso->mtype);CHKERRQ(ierr); 1110 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO n: %d \n", mat_mkl_pardiso->n);CHKERRQ(ierr); 1111 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO nrhs: %d \n", mat_mkl_pardiso->nrhs);CHKERRQ(ierr); 1112 ierr = PetscViewerASCIIPrintf(viewer,"MKL_PARDISO msglvl: %d \n", mat_mkl_pardiso->msglvl);CHKERRQ(ierr); 1113 } 1114 } 1115 PetscFunctionReturn(0); 1116 } 1117 1118 1119 #undef __FUNCT__ 1120 #define __FUNCT__ "MatGetInfo_MKL_PARDISO" 1121 PetscErrorCode MatGetInfo_MKL_PARDISO(Mat A, MatInfoType flag, MatInfo *info) 1122 { 1123 Mat_MKL_PARDISO *mat_mkl_pardiso =(Mat_MKL_PARDISO*)A->spptr; 1124 1125 PetscFunctionBegin; 1126 info->block_size = 1.0; 1127 info->nz_allocated = mat_mkl_pardiso->nz + 0.0; 1128 info->nz_unneeded = 0.0; 1129 info->assemblies = 0.0; 1130 info->mallocs = 0.0; 1131 info->memory = 0.0; 1132 info->fill_ratio_given = 0; 1133 info->fill_ratio_needed = 0; 1134 info->factor_mallocs = 0; 1135 PetscFunctionReturn(0); 1136 } 1137 1138 #undef __FUNCT__ 1139 #define __FUNCT__ "MatMkl_PardisoSetCntl_MKL_PARDISO" 1140 PetscErrorCode MatMkl_PardisoSetCntl_MKL_PARDISO(Mat F,PetscInt icntl,PetscInt ival) 1141 { 1142 Mat_MKL_PARDISO *mat_mkl_pardiso =(Mat_MKL_PARDISO*)F->spptr; 1143 1144 PetscFunctionBegin; 1145 if(icntl <= 64){ 1146 mat_mkl_pardiso->iparm[icntl - 1] = ival; 1147 } else { 1148 if(icntl == 65) 1149 mkl_set_num_threads((int)ival); 1150 else if(icntl == 66) 1151 mat_mkl_pardiso->maxfct = ival; 1152 else if(icntl == 67) 1153 mat_mkl_pardiso->mnum = ival; 1154 else if(icntl == 68) 1155 mat_mkl_pardiso->msglvl = ival; 1156 else if(icntl == 69){ 1157 void *pt[IPARM_SIZE]; 1158 mat_mkl_pardiso->mtype = ival; 1159 MKL_PARDISO_INIT(pt, &mat_mkl_pardiso->mtype, mat_mkl_pardiso->iparm); 1160 #if defined(PETSC_USE_REAL_SINGLE) 1161 mat_mkl_pardiso->iparm[27] = 1; 1162 #else 1163 mat_mkl_pardiso->iparm[27] = 0; 1164 #endif 1165 mat_mkl_pardiso->iparm[34] = 1; 1166 } else if(icntl==70) { 1167 mat_mkl_pardiso->solve_interior = !!ival; 1168 } 1169 } 1170 PetscFunctionReturn(0); 1171 } 1172 1173 #undef __FUNCT__ 1174 #define __FUNCT__ "MatMkl_PardisoSetCntl" 1175 /*@ 1176 MatMkl_PardisoSetCntl - Set Mkl_Pardiso parameters 1177 1178 Logically Collective on Mat 1179 1180 Input Parameters: 1181 + F - the factored matrix obtained by calling MatGetFactor() 1182 . icntl - index of Mkl_Pardiso parameter 1183 - ival - value of Mkl_Pardiso parameter 1184 1185 Options Database: 1186 . -mat_mkl_pardiso_<icntl> <ival> 1187 1188 Level: beginner 1189 1190 References: Mkl_Pardiso Users' Guide 1191 1192 .seealso: MatGetFactor() 1193 @*/ 1194 PetscErrorCode MatMkl_PardisoSetCntl(Mat F,PetscInt icntl,PetscInt ival) 1195 { 1196 PetscErrorCode ierr; 1197 1198 PetscFunctionBegin; 1199 ierr = PetscTryMethod(F,"MatMkl_PardisoSetCntl_C",(Mat,PetscInt,PetscInt),(F,icntl,ival));CHKERRQ(ierr); 1200 PetscFunctionReturn(0); 1201 } 1202 1203 /*MC 1204 MATSOLVERMKL_PARDISO - A matrix type providing direct solvers (LU) for 1205 sequential matrices via the external package MKL_PARDISO. 1206 1207 Works with MATSEQAIJ matrices 1208 1209 Use -pc_type lu -pc_factor_mat_solver_package mkl_pardiso to us this direct solver 1210 1211 Options Database Keys: 1212 + -mat_mkl_pardiso_65 - Number of threads to use 1213 . -mat_mkl_pardiso_66 - Maximum number of factors with identical sparsity structure that must be kept in memory at the same time 1214 . -mat_mkl_pardiso_67 - Indicates the actual matrix for the solution phase 1215 . -mat_mkl_pardiso_68 - Message level information 1216 . -mat_mkl_pardiso_69 - Defines the matrix type. IMPORTANT: When you set this flag, iparm parameters are going to be set to the default ones for the matrix type 1217 . -mat_mkl_pardiso_1 - Use default values 1218 . -mat_mkl_pardiso_2 - Fill-in reducing ordering for the input matrix 1219 . -mat_mkl_pardiso_4 - Preconditioned CGS/CG 1220 . -mat_mkl_pardiso_5 - User permutation 1221 . -mat_mkl_pardiso_6 - Write solution on x 1222 . -mat_mkl_pardiso_8 - Iterative refinement step 1223 . -mat_mkl_pardiso_10 - Pivoting perturbation 1224 . -mat_mkl_pardiso_11 - Scaling vectors 1225 . -mat_mkl_pardiso_12 - Solve with transposed or conjugate transposed matrix A 1226 . -mat_mkl_pardiso_13 - Improved accuracy using (non-) symmetric weighted matching 1227 . -mat_mkl_pardiso_18 - Numbers of non-zero elements 1228 . -mat_mkl_pardiso_19 - Report number of floating point operations 1229 . -mat_mkl_pardiso_21 - Pivoting for symmetric indefinite matrices 1230 . -mat_mkl_pardiso_24 - Parallel factorization control 1231 . -mat_mkl_pardiso_25 - Parallel forward/backward solve control 1232 . -mat_mkl_pardiso_27 - Matrix checker 1233 . -mat_mkl_pardiso_31 - Partial solve and computing selected components of the solution vectors 1234 . -mat_mkl_pardiso_34 - Optimal number of threads for conditional numerical reproducibility (CNR) mode 1235 - -mat_mkl_pardiso_60 - Intel MKL_PARDISO mode 1236 1237 Level: beginner 1238 1239 For more information please check mkl_pardiso manual 1240 1241 .seealso: PCFactorSetMatSolverPackage(), MatSolverPackage 1242 1243 M*/ 1244 #undef __FUNCT__ 1245 #define __FUNCT__ "MatFactorGetSolverPackage_mkl_pardiso" 1246 static PetscErrorCode MatFactorGetSolverPackage_mkl_pardiso(Mat A, const MatSolverPackage *type) 1247 { 1248 PetscFunctionBegin; 1249 *type = MATSOLVERMKL_PARDISO; 1250 PetscFunctionReturn(0); 1251 } 1252 1253 #undef __FUNCT__ 1254 #define __FUNCT__ "MatGetFactor_aij_mkl_pardiso" 1255 PETSC_EXTERN PetscErrorCode MatGetFactor_aij_mkl_pardiso(Mat A,MatFactorType ftype,Mat *F) 1256 { 1257 Mat B; 1258 PetscErrorCode ierr; 1259 Mat_MKL_PARDISO *mat_mkl_pardiso; 1260 PetscBool isSeqAIJ,isSeqBAIJ,isSeqSBAIJ; 1261 1262 PetscFunctionBegin; 1263 ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQAIJ,&isSeqAIJ);CHKERRQ(ierr); 1264 ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQBAIJ,&isSeqBAIJ);CHKERRQ(ierr); 1265 ierr = PetscObjectTypeCompare((PetscObject)A,MATSEQSBAIJ,&isSeqSBAIJ);CHKERRQ(ierr); 1266 ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1267 ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 1268 ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1269 ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 1270 ierr = MatSeqBAIJSetPreallocation(B,A->rmap->bs,0,NULL);CHKERRQ(ierr); 1271 ierr = MatSeqSBAIJSetPreallocation(B,A->rmap->bs,0,NULL);CHKERRQ(ierr); 1272 1273 ierr = PetscNewLog(B,&mat_mkl_pardiso);CHKERRQ(ierr); 1274 B->spptr = mat_mkl_pardiso; 1275 1276 ierr = MatFactorMKL_PARDISOInitialize_Private(A, ftype, mat_mkl_pardiso);CHKERRQ(ierr); 1277 if (ftype == MAT_FACTOR_LU) { 1278 B->ops->lufactorsymbolic = MatLUFactorSymbolic_AIJMKL_PARDISO; 1279 B->factortype = MAT_FACTOR_LU; 1280 mat_mkl_pardiso->needsym = PETSC_FALSE; 1281 if (isSeqAIJ) { 1282 mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqaij; 1283 } else if (isSeqBAIJ) { 1284 mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqbaij; 1285 } else if (isSeqSBAIJ) { 1286 SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for PARDISO LU factor with SEQSBAIJ format! Use MAT_FACTOR_CHOLESKY instead"); 1287 } else { 1288 SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for PARDISO LU with %s format",((PetscObject)A)->type_name); 1289 } 1290 #if defined(PETSC_USE_COMPLEX) 1291 mat_mkl_pardiso->schur_solver_type = 0; /* use a general solver for the moment */ 1292 mat_mkl_pardiso->mtype = 13; 1293 #else 1294 if (A->structurally_symmetric) { 1295 mat_mkl_pardiso->mtype = 1; 1296 } else { 1297 mat_mkl_pardiso->mtype = 11; 1298 } 1299 #endif 1300 mat_mkl_pardiso->schur_solver_type = 0; 1301 } else { 1302 B->ops->choleskyfactorsymbolic = MatCholeskyFactorSymbolic_AIJMKL_PARDISO; 1303 B->factortype = MAT_FACTOR_CHOLESKY; 1304 if (isSeqAIJ) { 1305 mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqaij; 1306 } else if (isSeqBAIJ) { 1307 mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqbaij; 1308 } else if (isSeqSBAIJ) { 1309 mat_mkl_pardiso->Convert = MatMKLPardiso_Convert_seqsbaij; 1310 } else { 1311 SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"No support for PARDISO CHOLESKY with %s format",((PetscObject)A)->type_name); 1312 } 1313 mat_mkl_pardiso->needsym = PETSC_TRUE; 1314 #if defined(PETSC_USE_COMPLEX) 1315 mat_mkl_pardiso->schur_solver_type = 0; /* use a general solver for the moment */ 1316 mat_mkl_pardiso->mtype = 13; 1317 #else 1318 if (A->spd_set && A->spd) { 1319 mat_mkl_pardiso->schur_solver_type = 2; 1320 mat_mkl_pardiso->mtype = 2; 1321 } else { 1322 mat_mkl_pardiso->schur_solver_type = 1; 1323 mat_mkl_pardiso->mtype = -2; 1324 } 1325 #endif 1326 } 1327 mat_mkl_pardiso->Destroy = B->ops->destroy; 1328 B->ops->destroy = MatDestroy_MKL_PARDISO; 1329 B->ops->view = MatView_MKL_PARDISO; 1330 B->factortype = ftype; 1331 B->ops->getinfo = MatGetInfo_MKL_PARDISO; 1332 B->assembled = PETSC_TRUE; 1333 1334 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSolverPackage_C",MatFactorGetSolverPackage_mkl_pardiso);CHKERRQ(ierr); 1335 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSetSchurIS_C",MatFactorSetSchurIS_MKL_PARDISO);CHKERRQ(ierr); 1336 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorCreateSchurComplement_C",MatFactorCreateSchurComplement_MKL_PARDISO);CHKERRQ(ierr); 1337 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorGetSchurComplement_C",MatFactorGetSchurComplement_MKL_PARDISO);CHKERRQ(ierr); 1338 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorInvertSchurComplement_C",MatFactorInvertSchurComplement_MKL_PARDISO);CHKERRQ(ierr); 1339 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSolveSchurComplement_C",MatFactorSolveSchurComplement_MKL_PARDISO);CHKERRQ(ierr); 1340 ierr = PetscObjectComposeFunction((PetscObject)B,"MatFactorSolveSchurComplementTranspose_C",MatFactorSolveSchurComplementTranspose_MKL_PARDISO);CHKERRQ(ierr); 1341 ierr = PetscObjectComposeFunction((PetscObject)B,"MatMkl_PardisoSetCntl_C",MatMkl_PardisoSetCntl_MKL_PARDISO);CHKERRQ(ierr); 1342 1343 *F = B; 1344 PetscFunctionReturn(0); 1345 } 1346 1347 #undef __FUNCT__ 1348 #define __FUNCT__ "MatSolverPackageRegister_MKL_Pardiso" 1349 PETSC_EXTERN PetscErrorCode MatSolverPackageRegister_MKL_Pardiso(void) 1350 { 1351 PetscErrorCode ierr; 1352 1353 PetscFunctionBegin; 1354 ierr = MatSolverPackageRegister(MATSOLVERMKL_PARDISO,MATSEQAIJ,MAT_FACTOR_LU,MatGetFactor_aij_mkl_pardiso);CHKERRQ(ierr); 1355 ierr = MatSolverPackageRegister(MATSOLVERMKL_PARDISO,MATSEQAIJ,MAT_FACTOR_CHOLESKY,MatGetFactor_aij_mkl_pardiso);CHKERRQ(ierr); 1356 ierr = MatSolverPackageRegister(MATSOLVERMKL_PARDISO,MATSEQSBAIJ,MAT_FACTOR_CHOLESKY,MatGetFactor_aij_mkl_pardiso);CHKERRQ(ierr); 1357 PetscFunctionReturn(0); 1358 } 1359 1360