1e4a0ef16SKarl Rupp 2e4a0ef16SKarl Rupp 3e4a0ef16SKarl Rupp /* 4e4a0ef16SKarl Rupp Defines the basic matrix operations for the AIJ (compressed row) 5e4a0ef16SKarl Rupp matrix storage format. 6e4a0ef16SKarl Rupp */ 7e4a0ef16SKarl Rupp 8aaa7dc30SBarry Smith #include <petscconf.h> 9aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 10aaa7dc30SBarry Smith #include <petscbt.h> 11aaa7dc30SBarry Smith #include <../src/vec/vec/impls/dvecimpl.h> 12af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 13e4a0ef16SKarl Rupp 14aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h> 15e4a0ef16SKarl Rupp 16e4a0ef16SKarl Rupp 17e4a0ef16SKarl Rupp #include <algorithm> 18e4a0ef16SKarl Rupp #include <vector> 19e4a0ef16SKarl Rupp #include <string> 20e4a0ef16SKarl Rupp 21e4a0ef16SKarl Rupp #include "viennacl/linalg/prod.hpp" 22e4a0ef16SKarl Rupp 238713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A, MatType type, MatReuse reuse, Mat *newmat); 2472367587SKarl Rupp PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_petsc(Mat,MatFactorType,Mat*); 2572367587SKarl Rupp 268713a8baSPatrick Sanan 27e4a0ef16SKarl Rupp PetscErrorCode MatViennaCLCopyToGPU(Mat A) 28e4a0ef16SKarl Rupp { 29e4a0ef16SKarl Rupp 30e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 31e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 32e4a0ef16SKarl Rupp PetscErrorCode ierr; 33e4a0ef16SKarl Rupp 34e4a0ef16SKarl Rupp PetscFunctionBegin; 35bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { //some OpenCL SDKs have issues with buffers of size 0 36b8ced49eSKarl Rupp if (A->valid_GPU_matrix == PETSC_OFFLOAD_UNALLOCATED || A->valid_GPU_matrix == PETSC_OFFLOAD_CPU) { 37e4a0ef16SKarl Rupp ierr = PetscLogEventBegin(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 38e4a0ef16SKarl Rupp 39e4a0ef16SKarl Rupp try { 40e4a0ef16SKarl Rupp if (a->compressedrow.use) { 41a3430c56SKarl Rupp if (!viennaclstruct->compressed_mat) viennaclstruct->compressed_mat = new ViennaCLCompressedAIJMatrix(); 42e4a0ef16SKarl Rupp 43a3430c56SKarl Rupp // Since PetscInt is different from cl_uint, we have to convert: 44a3430c56SKarl Rupp viennacl::backend::mem_handle dummy; 45e4a0ef16SKarl Rupp 46a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, a->compressedrow.nrows+1); 47a3430c56SKarl Rupp for (PetscInt i=0; i<=a->compressedrow.nrows; ++i) 48a3430c56SKarl Rupp row_buffer.set(i, (a->compressedrow.i)[i]); 49e4a0ef16SKarl Rupp 50a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_indices; row_indices.raw_resize(dummy, a->compressedrow.nrows); 51a3430c56SKarl Rupp for (PetscInt i=0; i<a->compressedrow.nrows; ++i) 52a3430c56SKarl Rupp row_indices.set(i, (a->compressedrow.rindex)[i]); 53a3430c56SKarl Rupp 54a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 55a3430c56SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 56a3430c56SKarl Rupp col_buffer.set(i, (a->j)[i]); 57a3430c56SKarl Rupp 58a3430c56SKarl Rupp viennaclstruct->compressed_mat->set(row_buffer.get(), row_indices.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->compressedrow.nrows, a->nz); 59e4a0ef16SKarl Rupp } else { 60a3430c56SKarl Rupp if (!viennaclstruct->mat) viennaclstruct->mat = new ViennaCLAIJMatrix(); 61e4a0ef16SKarl Rupp 62e4a0ef16SKarl Rupp // Since PetscInt is in general different from cl_uint, we have to convert: 63e4a0ef16SKarl Rupp viennacl::backend::mem_handle dummy; 64e4a0ef16SKarl Rupp 65e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, A->rmap->n+1); 66e4a0ef16SKarl Rupp for (PetscInt i=0; i<=A->rmap->n; ++i) 67e4a0ef16SKarl Rupp row_buffer.set(i, (a->i)[i]); 68e4a0ef16SKarl Rupp 69e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 70e4a0ef16SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 71e4a0ef16SKarl Rupp col_buffer.set(i, (a->j)[i]); 72e4a0ef16SKarl Rupp 73e4a0ef16SKarl Rupp viennaclstruct->mat->set(row_buffer.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->nz); 74e4a0ef16SKarl Rupp } 754cf1874eSKarl Rupp ViennaCLWaitForGPU(); 764076e183SKarl Rupp } catch(std::exception const & ex) { 774076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 78e4a0ef16SKarl Rupp } 79e4a0ef16SKarl Rupp 80a3430c56SKarl Rupp // Create temporary vector for v += A*x: 81a3430c56SKarl Rupp if (viennaclstruct->tempvec) { 829b66742cSDave May if (viennaclstruct->tempvec->size() != static_cast<std::size_t>(A->rmap->n)) { 83a3430c56SKarl Rupp delete (ViennaCLVector*)viennaclstruct->tempvec; 849b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 85a3430c56SKarl Rupp } else { 86a3430c56SKarl Rupp viennaclstruct->tempvec->clear(); 87a3430c56SKarl Rupp } 88a3430c56SKarl Rupp } else { 899b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 90a3430c56SKarl Rupp } 91a3430c56SKarl Rupp 92b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_BOTH; 93e4a0ef16SKarl Rupp 94e4a0ef16SKarl Rupp ierr = PetscLogEventEnd(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 95e4a0ef16SKarl Rupp } 9667c87b7fSKarl Rupp } 97e4a0ef16SKarl Rupp PetscFunctionReturn(0); 98e4a0ef16SKarl Rupp } 99e4a0ef16SKarl Rupp 1000d73d530SKarl Rupp PetscErrorCode MatViennaCLCopyFromGPU(Mat A, const ViennaCLAIJMatrix *Agpu) 101e4a0ef16SKarl Rupp { 102e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 103e4a0ef16SKarl Rupp PetscInt m = A->rmap->n; 104e4a0ef16SKarl Rupp PetscErrorCode ierr; 105e4a0ef16SKarl Rupp 106e4a0ef16SKarl Rupp 107e4a0ef16SKarl Rupp PetscFunctionBegin; 108b8ced49eSKarl Rupp if (A->valid_GPU_matrix == PETSC_OFFLOAD_UNALLOCATED) { 109e4a0ef16SKarl Rupp try { 1106c4ed002SBarry Smith if (a->compressedrow.use) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL: Cannot handle row compression for GPU matrices"); 1116c4ed002SBarry Smith else { 112e4a0ef16SKarl Rupp 113e4a0ef16SKarl Rupp if ((PetscInt)Agpu->size1() != m) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_ARG_SIZ, "GPU matrix has %d rows, should be %d", Agpu->size1(), m); 114e4a0ef16SKarl Rupp a->nz = Agpu->nnz(); 115e4a0ef16SKarl Rupp a->maxnz = a->nz; /* Since we allocate exactly the right amount */ 116e4a0ef16SKarl Rupp A->preallocated = PETSC_TRUE; 117e4a0ef16SKarl Rupp if (a->singlemalloc) { 118e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree3(a->a,a->j,a->i);CHKERRQ(ierr);} 119e4a0ef16SKarl Rupp } else { 120e4a0ef16SKarl Rupp if (a->i) {ierr = PetscFree(a->i);CHKERRQ(ierr);} 121e4a0ef16SKarl Rupp if (a->j) {ierr = PetscFree(a->j);CHKERRQ(ierr);} 122e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree(a->a);CHKERRQ(ierr);} 123e4a0ef16SKarl Rupp } 124dcca6d9dSJed Brown ierr = PetscMalloc3(a->nz,&a->a,a->nz,&a->j,m+1,&a->i);CHKERRQ(ierr); 125f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, a->nz*(sizeof(PetscScalar)+sizeof(PetscInt))+(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 126e4a0ef16SKarl Rupp 127e4a0ef16SKarl Rupp a->singlemalloc = PETSC_TRUE; 128e4a0ef16SKarl Rupp 129e4a0ef16SKarl Rupp /* Setup row lengths */ 130*071fcb05SBarry Smith ierr = PetscFree(a->imax);CHKERRQ(ierr); 131*071fcb05SBarry Smith ierr = PetscFree(a->ilen);CHKERRQ(ierr); 132*071fcb05SBarry Smith ierr = PetscMalloc1(m,&a->imax);CHKERRQ(ierr); 133*071fcb05SBarry Smith ierr = PetscMalloc1(m,&a->ilen);CHKERRQ(ierr); 134f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, 2*m*sizeof(PetscInt));CHKERRQ(ierr); 135e4a0ef16SKarl Rupp 136e4a0ef16SKarl Rupp /* Copy data back from GPU */ 137e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(Agpu->handle1(), Agpu->size1() + 1); 138e4a0ef16SKarl Rupp 139e4a0ef16SKarl Rupp // copy row array 140e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle1(), 0, row_buffer.raw_size(), row_buffer.get()); 141e4a0ef16SKarl Rupp (a->i)[0] = row_buffer[0]; 142e4a0ef16SKarl Rupp for (PetscInt i = 0; i < (PetscInt)Agpu->size1(); ++i) { 143e4a0ef16SKarl Rupp (a->i)[i+1] = row_buffer[i+1]; 144e4a0ef16SKarl Rupp a->imax[i] = a->ilen[i] = a->i[i+1] - a->i[i]; //Set imax[] and ilen[] arrays at the same time as i[] for better cache reuse 145e4a0ef16SKarl Rupp } 146e4a0ef16SKarl Rupp 147e4a0ef16SKarl Rupp // copy column indices 148e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(Agpu->handle2(), Agpu->nnz()); 149e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle2(), 0, col_buffer.raw_size(), col_buffer.get()); 150e4a0ef16SKarl Rupp for (PetscInt i=0; i < (PetscInt)Agpu->nnz(); ++i) 151e4a0ef16SKarl Rupp (a->j)[i] = col_buffer[i]; 152e4a0ef16SKarl Rupp 153e4a0ef16SKarl Rupp // copy nonzero entries directly to destination (no conversion required) 154e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle(), 0, sizeof(PetscScalar)*Agpu->nnz(), a->a); 155e4a0ef16SKarl Rupp 1564cf1874eSKarl Rupp ViennaCLWaitForGPU(); 157023073b3SKarl Rupp /* TODO: Once a->diag is moved out of MatAssemblyEnd(), invalidate it here. */ 158e4a0ef16SKarl Rupp } 1594076e183SKarl Rupp } catch(std::exception const & ex) { 1604076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_LIB, "ViennaCL error: %s", ex.what()); 161e4a0ef16SKarl Rupp } 162e4a0ef16SKarl Rupp 163b8ced49eSKarl Rupp /* This assembly prevents resetting the flag to PETSC_OFFLOAD_CPU and recopying */ 164e4a0ef16SKarl Rupp ierr = MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 165e4a0ef16SKarl Rupp ierr = MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 166e4a0ef16SKarl Rupp 167b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_BOTH; 1686c4ed002SBarry Smith } else SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL error: Only valid for unallocated GPU matrices"); 169e4a0ef16SKarl Rupp PetscFunctionReturn(0); 170e4a0ef16SKarl Rupp } 171e4a0ef16SKarl Rupp 172e4a0ef16SKarl Rupp PetscErrorCode MatMult_SeqAIJViennaCL(Mat A,Vec xx,Vec yy) 173e4a0ef16SKarl Rupp { 174e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 175e4a0ef16SKarl Rupp PetscErrorCode ierr; 176e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 1770d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL; 1780d73d530SKarl Rupp ViennaCLVector *ygpu=NULL; 179e4a0ef16SKarl Rupp 180e4a0ef16SKarl Rupp PetscFunctionBegin; 181bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { 182e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 183e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(yy,&ygpu);CHKERRQ(ierr); 184e4a0ef16SKarl Rupp try { 185b7832b47SStefano Zampini if (a->compressedrow.use) { 186b7832b47SStefano Zampini *ygpu = viennacl::linalg::prod(*viennaclstruct->compressed_mat, *xgpu); 187b7832b47SStefano Zampini } else { 188e4a0ef16SKarl Rupp *ygpu = viennacl::linalg::prod(*viennaclstruct->mat,*xgpu); 189b7832b47SStefano Zampini } 1904cf1874eSKarl Rupp ViennaCLWaitForGPU(); 1914076e183SKarl Rupp } catch (std::exception const & ex) { 1924076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 193e4a0ef16SKarl Rupp } 194e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 195e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(yy,&ygpu);CHKERRQ(ierr); 1969b66742cSDave May ierr = PetscLogFlops(2.0*a->nz - a->nonzerorowcnt);CHKERRQ(ierr); 197bf1781e8SStefano Zampini } else { 198bf1781e8SStefano Zampini ierr = VecSet(yy,0);CHKERRQ(ierr); 19967c87b7fSKarl Rupp } 200e4a0ef16SKarl Rupp PetscFunctionReturn(0); 201e4a0ef16SKarl Rupp } 202e4a0ef16SKarl Rupp 203e4a0ef16SKarl Rupp PetscErrorCode MatMultAdd_SeqAIJViennaCL(Mat A,Vec xx,Vec yy,Vec zz) 204e4a0ef16SKarl Rupp { 205e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 206e4a0ef16SKarl Rupp PetscErrorCode ierr; 207e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 2080d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL,*ygpu=NULL; 2090d73d530SKarl Rupp ViennaCLVector *zgpu=NULL; 210e4a0ef16SKarl Rupp 211e4a0ef16SKarl Rupp PetscFunctionBegin; 212bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { 213e4a0ef16SKarl Rupp try { 214e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 215e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(yy,&ygpu);CHKERRQ(ierr); 216e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(zz,&zgpu);CHKERRQ(ierr); 217e4a0ef16SKarl Rupp 218e4a0ef16SKarl Rupp if (a->compressedrow.use) { 219a3430c56SKarl Rupp ViennaCLVector temp = viennacl::linalg::prod(*viennaclstruct->compressed_mat, *xgpu); 220e4a0ef16SKarl Rupp *zgpu = *ygpu + temp; 2214cf1874eSKarl Rupp ViennaCLWaitForGPU(); 222e4a0ef16SKarl Rupp } else { 223a3430c56SKarl Rupp if (zz == xx || zz == yy) { //temporary required 224a3430c56SKarl Rupp ViennaCLVector temp = viennacl::linalg::prod(*viennaclstruct->mat, *xgpu); 225a3430c56SKarl Rupp *zgpu = *ygpu; 226a3430c56SKarl Rupp *zgpu += temp; 227a3430c56SKarl Rupp ViennaCLWaitForGPU(); 228a3430c56SKarl Rupp } else { 229a3430c56SKarl Rupp *viennaclstruct->tempvec = viennacl::linalg::prod(*viennaclstruct->mat, *xgpu); 230a3430c56SKarl Rupp *zgpu = *ygpu + *viennaclstruct->tempvec; 2314cf1874eSKarl Rupp ViennaCLWaitForGPU(); 232e4a0ef16SKarl Rupp } 233e4a0ef16SKarl Rupp } 234e4a0ef16SKarl Rupp 235e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 236e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(yy,&ygpu);CHKERRQ(ierr); 237e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(zz,&zgpu);CHKERRQ(ierr); 238e4a0ef16SKarl Rupp 2394076e183SKarl Rupp } catch(std::exception const & ex) { 2404076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 241e4a0ef16SKarl Rupp } 242e4a0ef16SKarl Rupp ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 243bf1781e8SStefano Zampini } else { 244bf1781e8SStefano Zampini ierr = VecCopy(yy,zz);CHKERRQ(ierr); 24567c87b7fSKarl Rupp } 246e4a0ef16SKarl Rupp PetscFunctionReturn(0); 247e4a0ef16SKarl Rupp } 248e4a0ef16SKarl Rupp 249e4a0ef16SKarl Rupp PetscErrorCode MatAssemblyEnd_SeqAIJViennaCL(Mat A,MatAssemblyType mode) 250e4a0ef16SKarl Rupp { 251e4a0ef16SKarl Rupp PetscErrorCode ierr; 252e4a0ef16SKarl Rupp 253e4a0ef16SKarl Rupp PetscFunctionBegin; 254e4a0ef16SKarl Rupp ierr = MatAssemblyEnd_SeqAIJ(A,mode);CHKERRQ(ierr); 255e7e92044SBarry Smith if (!A->pinnedtocpu) { 256e4a0ef16SKarl Rupp ierr = MatViennaCLCopyToGPU(A);CHKERRQ(ierr); 257e7e92044SBarry Smith } 258e4a0ef16SKarl Rupp PetscFunctionReturn(0); 259e4a0ef16SKarl Rupp } 260e4a0ef16SKarl Rupp 261e4a0ef16SKarl Rupp /* --------------------------------------------------------------------------------*/ 262e4a0ef16SKarl Rupp /*@ 263e4a0ef16SKarl Rupp MatCreateSeqAIJViennaCL - Creates a sparse matrix in AIJ (compressed row) format 26419fddfadSKarl Rupp (the default parallel PETSc format). This matrix will ultimately be pushed down 265e4a0ef16SKarl Rupp to GPUs and use the ViennaCL library for calculations. For good matrix 266e4a0ef16SKarl Rupp assembly performance the user should preallocate the matrix storage by setting 267e4a0ef16SKarl Rupp the parameter nz (or the array nnz). By setting these parameters accurately, 268e4a0ef16SKarl Rupp performance during matrix assembly can be increased substantially. 269e4a0ef16SKarl Rupp 270e4a0ef16SKarl Rupp 271d083f849SBarry Smith Collective 272e4a0ef16SKarl Rupp 273e4a0ef16SKarl Rupp Input Parameters: 274e4a0ef16SKarl Rupp + comm - MPI communicator, set to PETSC_COMM_SELF 275e4a0ef16SKarl Rupp . m - number of rows 276e4a0ef16SKarl Rupp . n - number of columns 277e4a0ef16SKarl Rupp . nz - number of nonzeros per row (same for all rows) 278e4a0ef16SKarl Rupp - nnz - array containing the number of nonzeros in the various rows 279e4a0ef16SKarl Rupp (possibly different for each row) or NULL 280e4a0ef16SKarl Rupp 281e4a0ef16SKarl Rupp Output Parameter: 282e4a0ef16SKarl Rupp . A - the matrix 283e4a0ef16SKarl Rupp 284e4a0ef16SKarl Rupp It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 285e4a0ef16SKarl Rupp MatXXXXSetPreallocation() paradigm instead of this routine directly. 286e4a0ef16SKarl Rupp [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 287e4a0ef16SKarl Rupp 288e4a0ef16SKarl Rupp Notes: 289e4a0ef16SKarl Rupp If nnz is given then nz is ignored 290e4a0ef16SKarl Rupp 291e4a0ef16SKarl Rupp The AIJ format (also called the Yale sparse matrix format or 292e4a0ef16SKarl Rupp compressed row storage), is fully compatible with standard Fortran 77 293e4a0ef16SKarl Rupp storage. That is, the stored row and column indices can begin at 294e4a0ef16SKarl Rupp either one (as in Fortran) or zero. See the users' manual for details. 295e4a0ef16SKarl Rupp 296e4a0ef16SKarl Rupp Specify the preallocated storage with either nz or nnz (not both). 297e4a0ef16SKarl Rupp Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 298e4a0ef16SKarl Rupp allocation. For large problems you MUST preallocate memory or you 299e4a0ef16SKarl Rupp will get TERRIBLE performance, see the users' manual chapter on matrices. 300e4a0ef16SKarl Rupp 301e4a0ef16SKarl Rupp Level: intermediate 302e4a0ef16SKarl Rupp 303e9e886b6SKarl Rupp .seealso: MatCreate(), MatCreateAIJ(), MatCreateAIJCUSPARSE(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ() 304e4a0ef16SKarl Rupp 305e4a0ef16SKarl Rupp @*/ 306e4a0ef16SKarl Rupp PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 307e4a0ef16SKarl Rupp { 308e4a0ef16SKarl Rupp PetscErrorCode ierr; 309e4a0ef16SKarl Rupp 310e4a0ef16SKarl Rupp PetscFunctionBegin; 311e4a0ef16SKarl Rupp ierr = MatCreate(comm,A);CHKERRQ(ierr); 312e4a0ef16SKarl Rupp ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 313e4a0ef16SKarl Rupp ierr = MatSetType(*A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 314e4a0ef16SKarl Rupp ierr = MatSeqAIJSetPreallocation_SeqAIJ(*A,nz,(PetscInt*)nnz);CHKERRQ(ierr); 315e4a0ef16SKarl Rupp PetscFunctionReturn(0); 316e4a0ef16SKarl Rupp } 317e4a0ef16SKarl Rupp 318e4a0ef16SKarl Rupp 319e4a0ef16SKarl Rupp PetscErrorCode MatDestroy_SeqAIJViennaCL(Mat A) 320e4a0ef16SKarl Rupp { 321e4a0ef16SKarl Rupp PetscErrorCode ierr; 322e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclcontainer = (Mat_SeqAIJViennaCL*)A->spptr; 323e4a0ef16SKarl Rupp 324e4a0ef16SKarl Rupp PetscFunctionBegin; 325e4a0ef16SKarl Rupp try { 3266447cd05SKarl Rupp if (viennaclcontainer) { 3276447cd05SKarl Rupp delete viennaclcontainer->tempvec; 3286447cd05SKarl Rupp delete viennaclcontainer->mat; 3296447cd05SKarl Rupp delete viennaclcontainer->compressed_mat; 330e4a0ef16SKarl Rupp delete viennaclcontainer; 3316447cd05SKarl Rupp } 332b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 3334076e183SKarl Rupp } catch(std::exception const & ex) { 3344076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 335e4a0ef16SKarl Rupp } 3368713a8baSPatrick Sanan 3378713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",NULL);CHKERRQ(ierr); 3388713a8baSPatrick Sanan 339e4a0ef16SKarl Rupp /* this next line is because MatDestroy tries to PetscFree spptr if it is not zero, and PetscFree only works if the memory was allocated with PetscNew or PetscMalloc, which don't call the constructor */ 340e4a0ef16SKarl Rupp A->spptr = 0; 341e4a0ef16SKarl Rupp ierr = MatDestroy_SeqAIJ(A);CHKERRQ(ierr); 342e4a0ef16SKarl Rupp PetscFunctionReturn(0); 343e4a0ef16SKarl Rupp } 344e4a0ef16SKarl Rupp 345e4a0ef16SKarl Rupp 346e4a0ef16SKarl Rupp PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJViennaCL(Mat B) 347e4a0ef16SKarl Rupp { 348e4a0ef16SKarl Rupp PetscErrorCode ierr; 349e4a0ef16SKarl Rupp 350e4a0ef16SKarl Rupp PetscFunctionBegin; 351e4a0ef16SKarl Rupp ierr = MatCreate_SeqAIJ(B);CHKERRQ(ierr); 3528713a8baSPatrick Sanan ierr = MatConvert_SeqAIJ_SeqAIJViennaCL(B,MATSEQAIJVIENNACL,MAT_INPLACE_MATRIX,&B); 3538713a8baSPatrick Sanan PetscFunctionReturn(0); 3548713a8baSPatrick Sanan } 3558713a8baSPatrick Sanan 356e7e92044SBarry Smith static PetscErrorCode MatPinToCPU_SeqAIJViennaCL(Mat,PetscBool); 357c3cca76eSKarl Rupp static PetscErrorCode MatDuplicate_SeqAIJViennaCL(Mat A,MatDuplicateOption cpvalues,Mat *B) 358c3cca76eSKarl Rupp { 359c3cca76eSKarl Rupp PetscErrorCode ierr; 360c3cca76eSKarl Rupp Mat C; 361c3cca76eSKarl Rupp 362c3cca76eSKarl Rupp PetscFunctionBegin; 363c3cca76eSKarl Rupp ierr = MatDuplicate_SeqAIJ(A,cpvalues,B);CHKERRQ(ierr); 364c3cca76eSKarl Rupp C = *B; 365c3cca76eSKarl Rupp 366e7e92044SBarry Smith ierr = MatPinToCPU_SeqAIJViennaCL(A,PETSC_FALSE);CHKERRQ(ierr); 367e7e92044SBarry Smith C->ops->pintocpu = MatPinToCPU_SeqAIJViennaCL; 368c3cca76eSKarl Rupp 369c3cca76eSKarl Rupp C->spptr = new Mat_SeqAIJViennaCL(); 370c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->tempvec = NULL; 371c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->mat = NULL; 372c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->compressed_mat = NULL; 373c3cca76eSKarl Rupp 374c3cca76eSKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)C,MATSEQAIJVIENNACL);CHKERRQ(ierr); 375c3cca76eSKarl Rupp 376b8ced49eSKarl Rupp C->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 377c3cca76eSKarl Rupp 378c3cca76eSKarl Rupp /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 379c3cca76eSKarl Rupp if (C->assembled) { 380c3cca76eSKarl Rupp ierr = MatViennaCLCopyToGPU(C);CHKERRQ(ierr); 381c3cca76eSKarl Rupp } 382c3cca76eSKarl Rupp 383c3cca76eSKarl Rupp PetscFunctionReturn(0); 384c3cca76eSKarl Rupp } 385c3cca76eSKarl Rupp 386e7e92044SBarry Smith static PetscErrorCode MatPinToCPU_SeqAIJViennaCL(Mat A,PetscBool flg) 387e7e92044SBarry Smith { 388e7e92044SBarry Smith PetscFunctionBegin; 389e7e92044SBarry Smith A->pinnedtocpu = flg; 390e7e92044SBarry Smith if (flg) { 391e7e92044SBarry Smith A->ops->mult = MatMult_SeqAIJ; 392e7e92044SBarry Smith A->ops->multadd = MatMultAdd_SeqAIJ; 393e7e92044SBarry Smith A->ops->assemblyend = MatAssemblyEnd_SeqAIJ; 394e7e92044SBarry Smith A->ops->destroy = MatDestroy_SeqAIJ; 395e7e92044SBarry Smith A->ops->duplicate = MatDuplicate_SeqAIJ; 396e7e92044SBarry Smith } else { 397e7e92044SBarry Smith A->ops->mult = MatMult_SeqAIJViennaCL; 398e7e92044SBarry Smith A->ops->multadd = MatMultAdd_SeqAIJViennaCL; 399e7e92044SBarry Smith A->ops->assemblyend = MatAssemblyEnd_SeqAIJViennaCL; 400e7e92044SBarry Smith A->ops->destroy = MatDestroy_SeqAIJViennaCL; 401e7e92044SBarry Smith A->ops->duplicate = MatDuplicate_SeqAIJViennaCL; 402e7e92044SBarry Smith } 403e7e92044SBarry Smith PetscFunctionReturn(0); 404e7e92044SBarry Smith } 405e7e92044SBarry Smith 4068713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A,MatType type,MatReuse reuse,Mat *newmat) 4078713a8baSPatrick Sanan { 4088713a8baSPatrick Sanan PetscErrorCode ierr; 4098713a8baSPatrick Sanan Mat B; 4108713a8baSPatrick Sanan Mat_SeqAIJ *aij; 4118713a8baSPatrick Sanan 4128713a8baSPatrick Sanan PetscFunctionBegin; 4138713a8baSPatrick Sanan 4148713a8baSPatrick Sanan if (reuse == MAT_REUSE_MATRIX) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"MAT_REUSE_MATRIX is not supported. Consider using MAT_INPLACE_MATRIX instead"); 4158713a8baSPatrick Sanan 4168713a8baSPatrick Sanan if (reuse == MAT_INITIAL_MATRIX) { 4178713a8baSPatrick Sanan ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 4188713a8baSPatrick Sanan } 4198713a8baSPatrick Sanan 4208713a8baSPatrick Sanan B = *newmat; 4218713a8baSPatrick Sanan 422e4a0ef16SKarl Rupp aij = (Mat_SeqAIJ*)B->data; 423e4a0ef16SKarl Rupp aij->inode.use = PETSC_FALSE; 4248713a8baSPatrick Sanan 425e4a0ef16SKarl Rupp B->spptr = new Mat_SeqAIJViennaCL(); 426e4a0ef16SKarl Rupp 427a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->tempvec = NULL; 428a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->mat = NULL; 429a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->compressed_mat = NULL; 430e4a0ef16SKarl Rupp 431e7e92044SBarry Smith ierr = MatPinToCPU_SeqAIJViennaCL(A,PETSC_FALSE);CHKERRQ(ierr); 432e7e92044SBarry Smith A->ops->pintocpu = MatPinToCPU_SeqAIJViennaCL; 433e4a0ef16SKarl Rupp 434e4a0ef16SKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQAIJVIENNACL);CHKERRQ(ierr); 43534136279SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 43634136279SStefano Zampini ierr = PetscStrallocpy(VECVIENNACL,&B->defaultvectype);CHKERRQ(ierr); 437e4a0ef16SKarl Rupp 4388713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",MatConvert_SeqAIJ_SeqAIJViennaCL);CHKERRQ(ierr); 4398713a8baSPatrick Sanan 440b8ced49eSKarl Rupp B->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 4418713a8baSPatrick Sanan 4428713a8baSPatrick Sanan /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 4438713a8baSPatrick Sanan if (B->assembled) { 4448713a8baSPatrick Sanan ierr = MatViennaCLCopyToGPU(B);CHKERRQ(ierr); 4458713a8baSPatrick Sanan } 4468713a8baSPatrick Sanan 447e4a0ef16SKarl Rupp PetscFunctionReturn(0); 448e4a0ef16SKarl Rupp } 449e4a0ef16SKarl Rupp 450e4a0ef16SKarl Rupp 4513ca39a21SBarry Smith /*MC 452e4a0ef16SKarl Rupp MATSEQAIJVIENNACL - MATAIJVIENNACL = "aijviennacl" = "seqaijviennacl" - A matrix type to be used for sparse matrices. 453e4a0ef16SKarl Rupp 454e4a0ef16SKarl Rupp A matrix type type whose data resides on GPUs. These matrices are in CSR format by 455e4a0ef16SKarl Rupp default. All matrix calculations are performed using the ViennaCL library. 456e4a0ef16SKarl Rupp 457e4a0ef16SKarl Rupp Options Database Keys: 458e4a0ef16SKarl Rupp + -mat_type aijviennacl - sets the matrix type to "seqaijviennacl" during a call to MatSetFromOptions() 459e4a0ef16SKarl Rupp . -mat_viennacl_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 460e4a0ef16SKarl Rupp - -mat_viennacl_mult_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 461e4a0ef16SKarl Rupp 462e4a0ef16SKarl Rupp Level: beginner 463e4a0ef16SKarl Rupp 464e4a0ef16SKarl Rupp .seealso: MatCreateSeqAIJViennaCL(), MATAIJVIENNACL, MatCreateAIJViennaCL() 465e4a0ef16SKarl Rupp M*/ 466e4a0ef16SKarl Rupp 46772367587SKarl Rupp 4683ca39a21SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_ViennaCL(void) 46972367587SKarl Rupp { 47072367587SKarl Rupp PetscErrorCode ierr; 47172367587SKarl Rupp 47272367587SKarl Rupp PetscFunctionBegin; 4733ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_LU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 4743ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_CHOLESKY,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 4753ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ILU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 4763ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ICC,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 47772367587SKarl Rupp PetscFunctionReturn(0); 47872367587SKarl Rupp } 479