1e4a0ef16SKarl Rupp 2e4a0ef16SKarl Rupp 3e4a0ef16SKarl Rupp /* 4e4a0ef16SKarl Rupp Defines the basic matrix operations for the AIJ (compressed row) 5e4a0ef16SKarl Rupp matrix storage format. 6e4a0ef16SKarl Rupp */ 7e4a0ef16SKarl Rupp 8aaa7dc30SBarry Smith #include <petscconf.h> 9aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 10aaa7dc30SBarry Smith #include <petscbt.h> 11aaa7dc30SBarry Smith #include <../src/vec/vec/impls/dvecimpl.h> 12af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 13e4a0ef16SKarl Rupp 14aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h> 15e4a0ef16SKarl Rupp 16e4a0ef16SKarl Rupp 17e4a0ef16SKarl Rupp #include <algorithm> 18e4a0ef16SKarl Rupp #include <vector> 19e4a0ef16SKarl Rupp #include <string> 20e4a0ef16SKarl Rupp 21e4a0ef16SKarl Rupp #include "viennacl/linalg/prod.hpp" 22e4a0ef16SKarl Rupp 238713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A, MatType type, MatReuse reuse, Mat *newmat); 2472367587SKarl Rupp PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_petsc(Mat,MatFactorType,Mat*); 2572367587SKarl Rupp 268713a8baSPatrick Sanan 27e4a0ef16SKarl Rupp PetscErrorCode MatViennaCLCopyToGPU(Mat A) 28e4a0ef16SKarl Rupp { 29e4a0ef16SKarl Rupp 30e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 31e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 32e4a0ef16SKarl Rupp PetscErrorCode ierr; 33e4a0ef16SKarl Rupp 34e4a0ef16SKarl Rupp PetscFunctionBegin; 35bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { //some OpenCL SDKs have issues with buffers of size 0 36b8ced49eSKarl Rupp if (A->valid_GPU_matrix == PETSC_OFFLOAD_UNALLOCATED || A->valid_GPU_matrix == PETSC_OFFLOAD_CPU) { 37e4a0ef16SKarl Rupp ierr = PetscLogEventBegin(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 38e4a0ef16SKarl Rupp 39e4a0ef16SKarl Rupp try { 40e4a0ef16SKarl Rupp if (a->compressedrow.use) { 41a3430c56SKarl Rupp if (!viennaclstruct->compressed_mat) viennaclstruct->compressed_mat = new ViennaCLCompressedAIJMatrix(); 42e4a0ef16SKarl Rupp 43a3430c56SKarl Rupp // Since PetscInt is different from cl_uint, we have to convert: 44a3430c56SKarl Rupp viennacl::backend::mem_handle dummy; 45e4a0ef16SKarl Rupp 46a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, a->compressedrow.nrows+1); 47a3430c56SKarl Rupp for (PetscInt i=0; i<=a->compressedrow.nrows; ++i) 48a3430c56SKarl Rupp row_buffer.set(i, (a->compressedrow.i)[i]); 49e4a0ef16SKarl Rupp 50a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_indices; row_indices.raw_resize(dummy, a->compressedrow.nrows); 51a3430c56SKarl Rupp for (PetscInt i=0; i<a->compressedrow.nrows; ++i) 52a3430c56SKarl Rupp row_indices.set(i, (a->compressedrow.rindex)[i]); 53a3430c56SKarl Rupp 54a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 55a3430c56SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 56a3430c56SKarl Rupp col_buffer.set(i, (a->j)[i]); 57a3430c56SKarl Rupp 58a3430c56SKarl Rupp viennaclstruct->compressed_mat->set(row_buffer.get(), row_indices.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->compressedrow.nrows, a->nz); 594863603aSSatish Balay ierr = PetscLogCpuToGpu(((2*a->compressedrow.nrows)+1+a->nz)*sizeof(PetscInt) + (a->nz)*sizeof(PetscScalar));CHKERRQ(ierr); 60e4a0ef16SKarl Rupp } else { 61a3430c56SKarl Rupp if (!viennaclstruct->mat) viennaclstruct->mat = new ViennaCLAIJMatrix(); 62e4a0ef16SKarl Rupp 63e4a0ef16SKarl Rupp // Since PetscInt is in general different from cl_uint, we have to convert: 64e4a0ef16SKarl Rupp viennacl::backend::mem_handle dummy; 65e4a0ef16SKarl Rupp 66e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, A->rmap->n+1); 67e4a0ef16SKarl Rupp for (PetscInt i=0; i<=A->rmap->n; ++i) 68e4a0ef16SKarl Rupp row_buffer.set(i, (a->i)[i]); 69e4a0ef16SKarl Rupp 70e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 71e4a0ef16SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 72e4a0ef16SKarl Rupp col_buffer.set(i, (a->j)[i]); 73e4a0ef16SKarl Rupp 74e4a0ef16SKarl Rupp viennaclstruct->mat->set(row_buffer.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->nz); 754863603aSSatish Balay ierr = PetscLogCpuToGpu(((A->rmap->n+1)+a->nz)*sizeof(PetscInt)+(a->nz)*sizeof(PetscScalar));CHKERRQ(ierr); 76e4a0ef16SKarl Rupp } 774cf1874eSKarl Rupp ViennaCLWaitForGPU(); 784076e183SKarl Rupp } catch(std::exception const & ex) { 794076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 80e4a0ef16SKarl Rupp } 81e4a0ef16SKarl Rupp 82a3430c56SKarl Rupp // Create temporary vector for v += A*x: 83a3430c56SKarl Rupp if (viennaclstruct->tempvec) { 849b66742cSDave May if (viennaclstruct->tempvec->size() != static_cast<std::size_t>(A->rmap->n)) { 85a3430c56SKarl Rupp delete (ViennaCLVector*)viennaclstruct->tempvec; 869b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 87a3430c56SKarl Rupp } else { 88a3430c56SKarl Rupp viennaclstruct->tempvec->clear(); 89a3430c56SKarl Rupp } 90a3430c56SKarl Rupp } else { 919b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 92a3430c56SKarl Rupp } 93a3430c56SKarl Rupp 94b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_BOTH; 95e4a0ef16SKarl Rupp 96e4a0ef16SKarl Rupp ierr = PetscLogEventEnd(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 97e4a0ef16SKarl Rupp } 9867c87b7fSKarl Rupp } 99e4a0ef16SKarl Rupp PetscFunctionReturn(0); 100e4a0ef16SKarl Rupp } 101e4a0ef16SKarl Rupp 1020d73d530SKarl Rupp PetscErrorCode MatViennaCLCopyFromGPU(Mat A, const ViennaCLAIJMatrix *Agpu) 103e4a0ef16SKarl Rupp { 104e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 105e4a0ef16SKarl Rupp PetscInt m = A->rmap->n; 106e4a0ef16SKarl Rupp PetscErrorCode ierr; 107e4a0ef16SKarl Rupp 108e4a0ef16SKarl Rupp 109e4a0ef16SKarl Rupp PetscFunctionBegin; 110b8ced49eSKarl Rupp if (A->valid_GPU_matrix == PETSC_OFFLOAD_UNALLOCATED) { 111e4a0ef16SKarl Rupp try { 1126c4ed002SBarry Smith if (a->compressedrow.use) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL: Cannot handle row compression for GPU matrices"); 1136c4ed002SBarry Smith else { 114e4a0ef16SKarl Rupp 115e4a0ef16SKarl Rupp if ((PetscInt)Agpu->size1() != m) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_ARG_SIZ, "GPU matrix has %d rows, should be %d", Agpu->size1(), m); 116e4a0ef16SKarl Rupp a->nz = Agpu->nnz(); 117e4a0ef16SKarl Rupp a->maxnz = a->nz; /* Since we allocate exactly the right amount */ 118e4a0ef16SKarl Rupp A->preallocated = PETSC_TRUE; 119e4a0ef16SKarl Rupp if (a->singlemalloc) { 120e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree3(a->a,a->j,a->i);CHKERRQ(ierr);} 121e4a0ef16SKarl Rupp } else { 122e4a0ef16SKarl Rupp if (a->i) {ierr = PetscFree(a->i);CHKERRQ(ierr);} 123e4a0ef16SKarl Rupp if (a->j) {ierr = PetscFree(a->j);CHKERRQ(ierr);} 124e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree(a->a);CHKERRQ(ierr);} 125e4a0ef16SKarl Rupp } 126dcca6d9dSJed Brown ierr = PetscMalloc3(a->nz,&a->a,a->nz,&a->j,m+1,&a->i);CHKERRQ(ierr); 127f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, a->nz*(sizeof(PetscScalar)+sizeof(PetscInt))+(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 128e4a0ef16SKarl Rupp 129e4a0ef16SKarl Rupp a->singlemalloc = PETSC_TRUE; 130e4a0ef16SKarl Rupp 131e4a0ef16SKarl Rupp /* Setup row lengths */ 132071fcb05SBarry Smith ierr = PetscFree(a->imax);CHKERRQ(ierr); 133071fcb05SBarry Smith ierr = PetscFree(a->ilen);CHKERRQ(ierr); 134071fcb05SBarry Smith ierr = PetscMalloc1(m,&a->imax);CHKERRQ(ierr); 135071fcb05SBarry Smith ierr = PetscMalloc1(m,&a->ilen);CHKERRQ(ierr); 136f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, 2*m*sizeof(PetscInt));CHKERRQ(ierr); 137e4a0ef16SKarl Rupp 138e4a0ef16SKarl Rupp /* Copy data back from GPU */ 139e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(Agpu->handle1(), Agpu->size1() + 1); 140e4a0ef16SKarl Rupp 141e4a0ef16SKarl Rupp // copy row array 142e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle1(), 0, row_buffer.raw_size(), row_buffer.get()); 143e4a0ef16SKarl Rupp (a->i)[0] = row_buffer[0]; 144e4a0ef16SKarl Rupp for (PetscInt i = 0; i < (PetscInt)Agpu->size1(); ++i) { 145e4a0ef16SKarl Rupp (a->i)[i+1] = row_buffer[i+1]; 146e4a0ef16SKarl Rupp a->imax[i] = a->ilen[i] = a->i[i+1] - a->i[i]; //Set imax[] and ilen[] arrays at the same time as i[] for better cache reuse 147e4a0ef16SKarl Rupp } 148e4a0ef16SKarl Rupp 149e4a0ef16SKarl Rupp // copy column indices 150e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(Agpu->handle2(), Agpu->nnz()); 151e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle2(), 0, col_buffer.raw_size(), col_buffer.get()); 152e4a0ef16SKarl Rupp for (PetscInt i=0; i < (PetscInt)Agpu->nnz(); ++i) 153e4a0ef16SKarl Rupp (a->j)[i] = col_buffer[i]; 154e4a0ef16SKarl Rupp 155e4a0ef16SKarl Rupp // copy nonzero entries directly to destination (no conversion required) 156e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle(), 0, sizeof(PetscScalar)*Agpu->nnz(), a->a); 157e4a0ef16SKarl Rupp 1584863603aSSatish Balay ierr = PetscLogGpuToCpu(row_buffer.raw_size()+col_buffer.raw_size()+(Agpu->nnz()*sizeof(PetscScalar)));CHKERRQ(ierr); 1594cf1874eSKarl Rupp ViennaCLWaitForGPU(); 160023073b3SKarl Rupp /* TODO: Once a->diag is moved out of MatAssemblyEnd(), invalidate it here. */ 161e4a0ef16SKarl Rupp } 1624076e183SKarl Rupp } catch(std::exception const & ex) { 1634076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_LIB, "ViennaCL error: %s", ex.what()); 164e4a0ef16SKarl Rupp } 165e4a0ef16SKarl Rupp 166b8ced49eSKarl Rupp /* This assembly prevents resetting the flag to PETSC_OFFLOAD_CPU and recopying */ 167e4a0ef16SKarl Rupp ierr = MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 168e4a0ef16SKarl Rupp ierr = MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 169e4a0ef16SKarl Rupp 170b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_BOTH; 1716c4ed002SBarry Smith } else SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL error: Only valid for unallocated GPU matrices"); 172e4a0ef16SKarl Rupp PetscFunctionReturn(0); 173e4a0ef16SKarl Rupp } 174e4a0ef16SKarl Rupp 175e4a0ef16SKarl Rupp PetscErrorCode MatMult_SeqAIJViennaCL(Mat A,Vec xx,Vec yy) 176e4a0ef16SKarl Rupp { 177e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 178e4a0ef16SKarl Rupp PetscErrorCode ierr; 179e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 1800d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL; 1810d73d530SKarl Rupp ViennaCLVector *ygpu=NULL; 182e4a0ef16SKarl Rupp 183e4a0ef16SKarl Rupp PetscFunctionBegin; 184bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { 185e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 186e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(yy,&ygpu);CHKERRQ(ierr); 187*7a052e47Shannah_mairs ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 188e4a0ef16SKarl Rupp try { 189b7832b47SStefano Zampini if (a->compressedrow.use) { 190b7832b47SStefano Zampini *ygpu = viennacl::linalg::prod(*viennaclstruct->compressed_mat, *xgpu); 191b7832b47SStefano Zampini } else { 192e4a0ef16SKarl Rupp *ygpu = viennacl::linalg::prod(*viennaclstruct->mat,*xgpu); 193b7832b47SStefano Zampini } 1944cf1874eSKarl Rupp ViennaCLWaitForGPU(); 1954076e183SKarl Rupp } catch (std::exception const & ex) { 1964076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 197e4a0ef16SKarl Rupp } 198958c4211Shannah_mairs ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 199e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 200e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(yy,&ygpu);CHKERRQ(ierr); 201958c4211Shannah_mairs ierr = PetscLogGpuFlops(2.0*a->nz - a->nonzerorowcnt);CHKERRQ(ierr); 202bf1781e8SStefano Zampini } else { 203bf1781e8SStefano Zampini ierr = VecSet(yy,0);CHKERRQ(ierr); 20467c87b7fSKarl Rupp } 205e4a0ef16SKarl Rupp PetscFunctionReturn(0); 206e4a0ef16SKarl Rupp } 207e4a0ef16SKarl Rupp 208e4a0ef16SKarl Rupp PetscErrorCode MatMultAdd_SeqAIJViennaCL(Mat A,Vec xx,Vec yy,Vec zz) 209e4a0ef16SKarl Rupp { 210e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 211e4a0ef16SKarl Rupp PetscErrorCode ierr; 212e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 2130d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL,*ygpu=NULL; 2140d73d530SKarl Rupp ViennaCLVector *zgpu=NULL; 215e4a0ef16SKarl Rupp 216e4a0ef16SKarl Rupp PetscFunctionBegin; 217bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { 218e4a0ef16SKarl Rupp try { 219e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 220e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(yy,&ygpu);CHKERRQ(ierr); 221e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(zz,&zgpu);CHKERRQ(ierr); 222*7a052e47Shannah_mairs ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 223e4a0ef16SKarl Rupp if (a->compressedrow.use) { 224a3430c56SKarl Rupp ViennaCLVector temp = viennacl::linalg::prod(*viennaclstruct->compressed_mat, *xgpu); 225e4a0ef16SKarl Rupp *zgpu = *ygpu + temp; 2264cf1874eSKarl Rupp ViennaCLWaitForGPU(); 227e4a0ef16SKarl Rupp } else { 228a3430c56SKarl Rupp if (zz == xx || zz == yy) { //temporary required 229a3430c56SKarl Rupp ViennaCLVector temp = viennacl::linalg::prod(*viennaclstruct->mat, *xgpu); 230a3430c56SKarl Rupp *zgpu = *ygpu; 231a3430c56SKarl Rupp *zgpu += temp; 232a3430c56SKarl Rupp ViennaCLWaitForGPU(); 233a3430c56SKarl Rupp } else { 234a3430c56SKarl Rupp *viennaclstruct->tempvec = viennacl::linalg::prod(*viennaclstruct->mat, *xgpu); 235a3430c56SKarl Rupp *zgpu = *ygpu + *viennaclstruct->tempvec; 2364cf1874eSKarl Rupp ViennaCLWaitForGPU(); 237e4a0ef16SKarl Rupp } 238e4a0ef16SKarl Rupp } 239958c4211Shannah_mairs ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 240e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 241e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(yy,&ygpu);CHKERRQ(ierr); 242e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(zz,&zgpu);CHKERRQ(ierr); 243e4a0ef16SKarl Rupp 2444076e183SKarl Rupp } catch(std::exception const & ex) { 2454076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 246e4a0ef16SKarl Rupp } 247958c4211Shannah_mairs ierr = PetscLogGpuFlops(2.0*a->nz);CHKERRQ(ierr); 248bf1781e8SStefano Zampini } else { 249bf1781e8SStefano Zampini ierr = VecCopy(yy,zz);CHKERRQ(ierr); 25067c87b7fSKarl Rupp } 251e4a0ef16SKarl Rupp PetscFunctionReturn(0); 252e4a0ef16SKarl Rupp } 253e4a0ef16SKarl Rupp 254e4a0ef16SKarl Rupp PetscErrorCode MatAssemblyEnd_SeqAIJViennaCL(Mat A,MatAssemblyType mode) 255e4a0ef16SKarl Rupp { 256e4a0ef16SKarl Rupp PetscErrorCode ierr; 257e4a0ef16SKarl Rupp 258e4a0ef16SKarl Rupp PetscFunctionBegin; 259e4a0ef16SKarl Rupp ierr = MatAssemblyEnd_SeqAIJ(A,mode);CHKERRQ(ierr); 260e7e92044SBarry Smith if (!A->pinnedtocpu) { 261e4a0ef16SKarl Rupp ierr = MatViennaCLCopyToGPU(A);CHKERRQ(ierr); 262e7e92044SBarry Smith } 263e4a0ef16SKarl Rupp PetscFunctionReturn(0); 264e4a0ef16SKarl Rupp } 265e4a0ef16SKarl Rupp 266e4a0ef16SKarl Rupp /* --------------------------------------------------------------------------------*/ 267e4a0ef16SKarl Rupp /*@ 268e4a0ef16SKarl Rupp MatCreateSeqAIJViennaCL - Creates a sparse matrix in AIJ (compressed row) format 26919fddfadSKarl Rupp (the default parallel PETSc format). This matrix will ultimately be pushed down 270e4a0ef16SKarl Rupp to GPUs and use the ViennaCL library for calculations. For good matrix 271e4a0ef16SKarl Rupp assembly performance the user should preallocate the matrix storage by setting 272e4a0ef16SKarl Rupp the parameter nz (or the array nnz). By setting these parameters accurately, 273e4a0ef16SKarl Rupp performance during matrix assembly can be increased substantially. 274e4a0ef16SKarl Rupp 275e4a0ef16SKarl Rupp 276d083f849SBarry Smith Collective 277e4a0ef16SKarl Rupp 278e4a0ef16SKarl Rupp Input Parameters: 279e4a0ef16SKarl Rupp + comm - MPI communicator, set to PETSC_COMM_SELF 280e4a0ef16SKarl Rupp . m - number of rows 281e4a0ef16SKarl Rupp . n - number of columns 282e4a0ef16SKarl Rupp . nz - number of nonzeros per row (same for all rows) 283e4a0ef16SKarl Rupp - nnz - array containing the number of nonzeros in the various rows 284e4a0ef16SKarl Rupp (possibly different for each row) or NULL 285e4a0ef16SKarl Rupp 286e4a0ef16SKarl Rupp Output Parameter: 287e4a0ef16SKarl Rupp . A - the matrix 288e4a0ef16SKarl Rupp 289e4a0ef16SKarl Rupp It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 290e4a0ef16SKarl Rupp MatXXXXSetPreallocation() paradigm instead of this routine directly. 291e4a0ef16SKarl Rupp [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 292e4a0ef16SKarl Rupp 293e4a0ef16SKarl Rupp Notes: 294e4a0ef16SKarl Rupp If nnz is given then nz is ignored 295e4a0ef16SKarl Rupp 296e4a0ef16SKarl Rupp The AIJ format (also called the Yale sparse matrix format or 297e4a0ef16SKarl Rupp compressed row storage), is fully compatible with standard Fortran 77 298e4a0ef16SKarl Rupp storage. That is, the stored row and column indices can begin at 299e4a0ef16SKarl Rupp either one (as in Fortran) or zero. See the users' manual for details. 300e4a0ef16SKarl Rupp 301e4a0ef16SKarl Rupp Specify the preallocated storage with either nz or nnz (not both). 302e4a0ef16SKarl Rupp Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 303e4a0ef16SKarl Rupp allocation. For large problems you MUST preallocate memory or you 304e4a0ef16SKarl Rupp will get TERRIBLE performance, see the users' manual chapter on matrices. 305e4a0ef16SKarl Rupp 306e4a0ef16SKarl Rupp Level: intermediate 307e4a0ef16SKarl Rupp 308e9e886b6SKarl Rupp .seealso: MatCreate(), MatCreateAIJ(), MatCreateAIJCUSPARSE(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ() 309e4a0ef16SKarl Rupp 310e4a0ef16SKarl Rupp @*/ 311e4a0ef16SKarl Rupp PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 312e4a0ef16SKarl Rupp { 313e4a0ef16SKarl Rupp PetscErrorCode ierr; 314e4a0ef16SKarl Rupp 315e4a0ef16SKarl Rupp PetscFunctionBegin; 316e4a0ef16SKarl Rupp ierr = MatCreate(comm,A);CHKERRQ(ierr); 317e4a0ef16SKarl Rupp ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 318e4a0ef16SKarl Rupp ierr = MatSetType(*A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 319e4a0ef16SKarl Rupp ierr = MatSeqAIJSetPreallocation_SeqAIJ(*A,nz,(PetscInt*)nnz);CHKERRQ(ierr); 320e4a0ef16SKarl Rupp PetscFunctionReturn(0); 321e4a0ef16SKarl Rupp } 322e4a0ef16SKarl Rupp 323e4a0ef16SKarl Rupp 324e4a0ef16SKarl Rupp PetscErrorCode MatDestroy_SeqAIJViennaCL(Mat A) 325e4a0ef16SKarl Rupp { 326e4a0ef16SKarl Rupp PetscErrorCode ierr; 327e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclcontainer = (Mat_SeqAIJViennaCL*)A->spptr; 328e4a0ef16SKarl Rupp 329e4a0ef16SKarl Rupp PetscFunctionBegin; 330e4a0ef16SKarl Rupp try { 3316447cd05SKarl Rupp if (viennaclcontainer) { 3326447cd05SKarl Rupp delete viennaclcontainer->tempvec; 3336447cd05SKarl Rupp delete viennaclcontainer->mat; 3346447cd05SKarl Rupp delete viennaclcontainer->compressed_mat; 335e4a0ef16SKarl Rupp delete viennaclcontainer; 3366447cd05SKarl Rupp } 337b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 3384076e183SKarl Rupp } catch(std::exception const & ex) { 3394076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 340e4a0ef16SKarl Rupp } 3418713a8baSPatrick Sanan 3428713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",NULL);CHKERRQ(ierr); 3438713a8baSPatrick Sanan 344e4a0ef16SKarl Rupp /* this next line is because MatDestroy tries to PetscFree spptr if it is not zero, and PetscFree only works if the memory was allocated with PetscNew or PetscMalloc, which don't call the constructor */ 345e4a0ef16SKarl Rupp A->spptr = 0; 346e4a0ef16SKarl Rupp ierr = MatDestroy_SeqAIJ(A);CHKERRQ(ierr); 347e4a0ef16SKarl Rupp PetscFunctionReturn(0); 348e4a0ef16SKarl Rupp } 349e4a0ef16SKarl Rupp 350e4a0ef16SKarl Rupp 351e4a0ef16SKarl Rupp PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJViennaCL(Mat B) 352e4a0ef16SKarl Rupp { 353e4a0ef16SKarl Rupp PetscErrorCode ierr; 354e4a0ef16SKarl Rupp 355e4a0ef16SKarl Rupp PetscFunctionBegin; 356e4a0ef16SKarl Rupp ierr = MatCreate_SeqAIJ(B);CHKERRQ(ierr); 3578713a8baSPatrick Sanan ierr = MatConvert_SeqAIJ_SeqAIJViennaCL(B,MATSEQAIJVIENNACL,MAT_INPLACE_MATRIX,&B); 3588713a8baSPatrick Sanan PetscFunctionReturn(0); 3598713a8baSPatrick Sanan } 3608713a8baSPatrick Sanan 361e7e92044SBarry Smith static PetscErrorCode MatPinToCPU_SeqAIJViennaCL(Mat,PetscBool); 362c3cca76eSKarl Rupp static PetscErrorCode MatDuplicate_SeqAIJViennaCL(Mat A,MatDuplicateOption cpvalues,Mat *B) 363c3cca76eSKarl Rupp { 364c3cca76eSKarl Rupp PetscErrorCode ierr; 365c3cca76eSKarl Rupp Mat C; 366c3cca76eSKarl Rupp 367c3cca76eSKarl Rupp PetscFunctionBegin; 368c3cca76eSKarl Rupp ierr = MatDuplicate_SeqAIJ(A,cpvalues,B);CHKERRQ(ierr); 369c3cca76eSKarl Rupp C = *B; 370c3cca76eSKarl Rupp 371e7e92044SBarry Smith ierr = MatPinToCPU_SeqAIJViennaCL(A,PETSC_FALSE);CHKERRQ(ierr); 372e7e92044SBarry Smith C->ops->pintocpu = MatPinToCPU_SeqAIJViennaCL; 373c3cca76eSKarl Rupp 374c3cca76eSKarl Rupp C->spptr = new Mat_SeqAIJViennaCL(); 375c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->tempvec = NULL; 376c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->mat = NULL; 377c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->compressed_mat = NULL; 378c3cca76eSKarl Rupp 379c3cca76eSKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)C,MATSEQAIJVIENNACL);CHKERRQ(ierr); 380c3cca76eSKarl Rupp 381b8ced49eSKarl Rupp C->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 382c3cca76eSKarl Rupp 383c3cca76eSKarl Rupp /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 384c3cca76eSKarl Rupp if (C->assembled) { 385c3cca76eSKarl Rupp ierr = MatViennaCLCopyToGPU(C);CHKERRQ(ierr); 386c3cca76eSKarl Rupp } 387c3cca76eSKarl Rupp 388c3cca76eSKarl Rupp PetscFunctionReturn(0); 389c3cca76eSKarl Rupp } 390c3cca76eSKarl Rupp 391e7e92044SBarry Smith static PetscErrorCode MatPinToCPU_SeqAIJViennaCL(Mat A,PetscBool flg) 392e7e92044SBarry Smith { 393e7e92044SBarry Smith PetscFunctionBegin; 394e7e92044SBarry Smith A->pinnedtocpu = flg; 395e7e92044SBarry Smith if (flg) { 396e7e92044SBarry Smith A->ops->mult = MatMult_SeqAIJ; 397e7e92044SBarry Smith A->ops->multadd = MatMultAdd_SeqAIJ; 398e7e92044SBarry Smith A->ops->assemblyend = MatAssemblyEnd_SeqAIJ; 399e7e92044SBarry Smith A->ops->duplicate = MatDuplicate_SeqAIJ; 400e7e92044SBarry Smith } else { 401e7e92044SBarry Smith A->ops->mult = MatMult_SeqAIJViennaCL; 402e7e92044SBarry Smith A->ops->multadd = MatMultAdd_SeqAIJViennaCL; 403e7e92044SBarry Smith A->ops->assemblyend = MatAssemblyEnd_SeqAIJViennaCL; 404e7e92044SBarry Smith A->ops->destroy = MatDestroy_SeqAIJViennaCL; 405e7e92044SBarry Smith A->ops->duplicate = MatDuplicate_SeqAIJViennaCL; 406e7e92044SBarry Smith } 407e7e92044SBarry Smith PetscFunctionReturn(0); 408e7e92044SBarry Smith } 409e7e92044SBarry Smith 4108713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A,MatType type,MatReuse reuse,Mat *newmat) 4118713a8baSPatrick Sanan { 4128713a8baSPatrick Sanan PetscErrorCode ierr; 4138713a8baSPatrick Sanan Mat B; 4148713a8baSPatrick Sanan Mat_SeqAIJ *aij; 4158713a8baSPatrick Sanan 4168713a8baSPatrick Sanan PetscFunctionBegin; 4178713a8baSPatrick Sanan 4188713a8baSPatrick Sanan if (reuse == MAT_REUSE_MATRIX) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"MAT_REUSE_MATRIX is not supported. Consider using MAT_INPLACE_MATRIX instead"); 4198713a8baSPatrick Sanan 4208713a8baSPatrick Sanan if (reuse == MAT_INITIAL_MATRIX) { 4218713a8baSPatrick Sanan ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 4228713a8baSPatrick Sanan } 4238713a8baSPatrick Sanan 4248713a8baSPatrick Sanan B = *newmat; 4258713a8baSPatrick Sanan 426e4a0ef16SKarl Rupp aij = (Mat_SeqAIJ*)B->data; 427e4a0ef16SKarl Rupp aij->inode.use = PETSC_FALSE; 4288713a8baSPatrick Sanan 429e4a0ef16SKarl Rupp B->spptr = new Mat_SeqAIJViennaCL(); 430e4a0ef16SKarl Rupp 431a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->tempvec = NULL; 432a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->mat = NULL; 433a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->compressed_mat = NULL; 434e4a0ef16SKarl Rupp 435e7e92044SBarry Smith ierr = MatPinToCPU_SeqAIJViennaCL(A,PETSC_FALSE);CHKERRQ(ierr); 436e7e92044SBarry Smith A->ops->pintocpu = MatPinToCPU_SeqAIJViennaCL; 437e4a0ef16SKarl Rupp 438e4a0ef16SKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQAIJVIENNACL);CHKERRQ(ierr); 43934136279SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 44034136279SStefano Zampini ierr = PetscStrallocpy(VECVIENNACL,&B->defaultvectype);CHKERRQ(ierr); 441e4a0ef16SKarl Rupp 4428713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",MatConvert_SeqAIJ_SeqAIJViennaCL);CHKERRQ(ierr); 4438713a8baSPatrick Sanan 444b8ced49eSKarl Rupp B->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 4458713a8baSPatrick Sanan 4468713a8baSPatrick Sanan /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 4478713a8baSPatrick Sanan if (B->assembled) { 4488713a8baSPatrick Sanan ierr = MatViennaCLCopyToGPU(B);CHKERRQ(ierr); 4498713a8baSPatrick Sanan } 4508713a8baSPatrick Sanan 451e4a0ef16SKarl Rupp PetscFunctionReturn(0); 452e4a0ef16SKarl Rupp } 453e4a0ef16SKarl Rupp 454e4a0ef16SKarl Rupp 4553ca39a21SBarry Smith /*MC 456e4a0ef16SKarl Rupp MATSEQAIJVIENNACL - MATAIJVIENNACL = "aijviennacl" = "seqaijviennacl" - A matrix type to be used for sparse matrices. 457e4a0ef16SKarl Rupp 458e4a0ef16SKarl Rupp A matrix type type whose data resides on GPUs. These matrices are in CSR format by 459e4a0ef16SKarl Rupp default. All matrix calculations are performed using the ViennaCL library. 460e4a0ef16SKarl Rupp 461e4a0ef16SKarl Rupp Options Database Keys: 462e4a0ef16SKarl Rupp + -mat_type aijviennacl - sets the matrix type to "seqaijviennacl" during a call to MatSetFromOptions() 463e4a0ef16SKarl Rupp . -mat_viennacl_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 464e4a0ef16SKarl Rupp - -mat_viennacl_mult_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 465e4a0ef16SKarl Rupp 466e4a0ef16SKarl Rupp Level: beginner 467e4a0ef16SKarl Rupp 468e4a0ef16SKarl Rupp .seealso: MatCreateSeqAIJViennaCL(), MATAIJVIENNACL, MatCreateAIJViennaCL() 469e4a0ef16SKarl Rupp M*/ 470e4a0ef16SKarl Rupp 47172367587SKarl Rupp 4723ca39a21SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_ViennaCL(void) 47372367587SKarl Rupp { 47472367587SKarl Rupp PetscErrorCode ierr; 47572367587SKarl Rupp 47672367587SKarl Rupp PetscFunctionBegin; 4773ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_LU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 4783ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_CHOLESKY,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 4793ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ILU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 4803ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ICC,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 48172367587SKarl Rupp PetscFunctionReturn(0); 48272367587SKarl Rupp } 483