1e4a0ef16SKarl Rupp 2e4a0ef16SKarl Rupp 3e4a0ef16SKarl Rupp /* 4e4a0ef16SKarl Rupp Defines the basic matrix operations for the AIJ (compressed row) 5e4a0ef16SKarl Rupp matrix storage format. 6e4a0ef16SKarl Rupp */ 7e4a0ef16SKarl Rupp 8aaa7dc30SBarry Smith #include <petscconf.h> 9aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 10aaa7dc30SBarry Smith #include <petscbt.h> 11aaa7dc30SBarry Smith #include <../src/vec/vec/impls/dvecimpl.h> 12af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 13e4a0ef16SKarl Rupp 14aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h> 15e4a0ef16SKarl Rupp 16e4a0ef16SKarl Rupp 17e4a0ef16SKarl Rupp #include <algorithm> 18e4a0ef16SKarl Rupp #include <vector> 19e4a0ef16SKarl Rupp #include <string> 20e4a0ef16SKarl Rupp 21e4a0ef16SKarl Rupp #include "viennacl/linalg/prod.hpp" 22e4a0ef16SKarl Rupp 238713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A, MatType type, MatReuse reuse, Mat *newmat); 2472367587SKarl Rupp PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_petsc(Mat,MatFactorType,Mat*); 2572367587SKarl Rupp 268713a8baSPatrick Sanan 27e4a0ef16SKarl Rupp PetscErrorCode MatViennaCLCopyToGPU(Mat A) 28e4a0ef16SKarl Rupp { 29e4a0ef16SKarl Rupp 30e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 31e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 32e4a0ef16SKarl Rupp PetscErrorCode ierr; 33e4a0ef16SKarl Rupp 34e4a0ef16SKarl Rupp 35e4a0ef16SKarl Rupp PetscFunctionBegin; 3667c87b7fSKarl Rupp if (A->rmap->n > 0 && A->cmap->n > 0) { //some OpenCL SDKs have issues with buffers of size 0 37e4a0ef16SKarl Rupp if (A->valid_GPU_matrix == PETSC_VIENNACL_UNALLOCATED || A->valid_GPU_matrix == PETSC_VIENNACL_CPU) { 38e4a0ef16SKarl Rupp ierr = PetscLogEventBegin(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 39e4a0ef16SKarl Rupp 40e4a0ef16SKarl Rupp try { 41e4a0ef16SKarl Rupp if (a->compressedrow.use) { 42a3430c56SKarl Rupp if (!viennaclstruct->compressed_mat) viennaclstruct->compressed_mat = new ViennaCLCompressedAIJMatrix(); 43e4a0ef16SKarl Rupp 44a3430c56SKarl Rupp // Since PetscInt is different from cl_uint, we have to convert: 45a3430c56SKarl Rupp viennacl::backend::mem_handle dummy; 46e4a0ef16SKarl Rupp 47a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, a->compressedrow.nrows+1); 48a3430c56SKarl Rupp for (PetscInt i=0; i<=a->compressedrow.nrows; ++i) 49a3430c56SKarl Rupp row_buffer.set(i, (a->compressedrow.i)[i]); 50e4a0ef16SKarl Rupp 51a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_indices; row_indices.raw_resize(dummy, a->compressedrow.nrows); 52a3430c56SKarl Rupp for (PetscInt i=0; i<a->compressedrow.nrows; ++i) 53a3430c56SKarl Rupp row_indices.set(i, (a->compressedrow.rindex)[i]); 54a3430c56SKarl Rupp 55a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 56a3430c56SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 57a3430c56SKarl Rupp col_buffer.set(i, (a->j)[i]); 58a3430c56SKarl Rupp 59a3430c56SKarl Rupp viennaclstruct->compressed_mat->set(row_buffer.get(), row_indices.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->compressedrow.nrows, a->nz); 60e4a0ef16SKarl Rupp } else { 61a3430c56SKarl Rupp if (!viennaclstruct->mat) viennaclstruct->mat = new ViennaCLAIJMatrix(); 62e4a0ef16SKarl Rupp 63e4a0ef16SKarl Rupp // Since PetscInt is in general different from cl_uint, we have to convert: 64e4a0ef16SKarl Rupp viennacl::backend::mem_handle dummy; 65e4a0ef16SKarl Rupp 66e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, A->rmap->n+1); 67e4a0ef16SKarl Rupp for (PetscInt i=0; i<=A->rmap->n; ++i) 68e4a0ef16SKarl Rupp row_buffer.set(i, (a->i)[i]); 69e4a0ef16SKarl Rupp 70e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 71e4a0ef16SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 72e4a0ef16SKarl Rupp col_buffer.set(i, (a->j)[i]); 73e4a0ef16SKarl Rupp 74e4a0ef16SKarl Rupp viennaclstruct->mat->set(row_buffer.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->nz); 75e4a0ef16SKarl Rupp } 764cf1874eSKarl Rupp ViennaCLWaitForGPU(); 774076e183SKarl Rupp } catch(std::exception const & ex) { 784076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 79e4a0ef16SKarl Rupp } 80e4a0ef16SKarl Rupp 81a3430c56SKarl Rupp // Create temporary vector for v += A*x: 82a3430c56SKarl Rupp if (viennaclstruct->tempvec) { 839b66742cSDave May if (viennaclstruct->tempvec->size() != static_cast<std::size_t>(A->rmap->n)) { 84a3430c56SKarl Rupp delete (ViennaCLVector*)viennaclstruct->tempvec; 859b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 86a3430c56SKarl Rupp } else { 87a3430c56SKarl Rupp viennaclstruct->tempvec->clear(); 88a3430c56SKarl Rupp } 89a3430c56SKarl Rupp } else { 909b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 91a3430c56SKarl Rupp } 92a3430c56SKarl Rupp 93e4a0ef16SKarl Rupp A->valid_GPU_matrix = PETSC_VIENNACL_BOTH; 94e4a0ef16SKarl Rupp 95e4a0ef16SKarl Rupp ierr = PetscLogEventEnd(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 96e4a0ef16SKarl Rupp } 9767c87b7fSKarl Rupp } 98e4a0ef16SKarl Rupp PetscFunctionReturn(0); 99e4a0ef16SKarl Rupp } 100e4a0ef16SKarl Rupp 1010d73d530SKarl Rupp PetscErrorCode MatViennaCLCopyFromGPU(Mat A, const ViennaCLAIJMatrix *Agpu) 102e4a0ef16SKarl Rupp { 103e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 104e4a0ef16SKarl Rupp PetscInt m = A->rmap->n; 105e4a0ef16SKarl Rupp PetscErrorCode ierr; 106e4a0ef16SKarl Rupp 107e4a0ef16SKarl Rupp 108e4a0ef16SKarl Rupp PetscFunctionBegin; 109e4a0ef16SKarl Rupp if (A->valid_GPU_matrix == PETSC_VIENNACL_UNALLOCATED) { 110e4a0ef16SKarl Rupp try { 1116c4ed002SBarry Smith if (a->compressedrow.use) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL: Cannot handle row compression for GPU matrices"); 1126c4ed002SBarry Smith else { 113e4a0ef16SKarl Rupp 114e4a0ef16SKarl Rupp if ((PetscInt)Agpu->size1() != m) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_ARG_SIZ, "GPU matrix has %d rows, should be %d", Agpu->size1(), m); 115e4a0ef16SKarl Rupp a->nz = Agpu->nnz(); 116e4a0ef16SKarl Rupp a->maxnz = a->nz; /* Since we allocate exactly the right amount */ 117e4a0ef16SKarl Rupp A->preallocated = PETSC_TRUE; 118e4a0ef16SKarl Rupp if (a->singlemalloc) { 119e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree3(a->a,a->j,a->i);CHKERRQ(ierr);} 120e4a0ef16SKarl Rupp } else { 121e4a0ef16SKarl Rupp if (a->i) {ierr = PetscFree(a->i);CHKERRQ(ierr);} 122e4a0ef16SKarl Rupp if (a->j) {ierr = PetscFree(a->j);CHKERRQ(ierr);} 123e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree(a->a);CHKERRQ(ierr);} 124e4a0ef16SKarl Rupp } 125dcca6d9dSJed Brown ierr = PetscMalloc3(a->nz,&a->a,a->nz,&a->j,m+1,&a->i);CHKERRQ(ierr); 126f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, a->nz*(sizeof(PetscScalar)+sizeof(PetscInt))+(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 127e4a0ef16SKarl Rupp 128e4a0ef16SKarl Rupp a->singlemalloc = PETSC_TRUE; 129e4a0ef16SKarl Rupp 130e4a0ef16SKarl Rupp /* Setup row lengths */ 131e4a0ef16SKarl Rupp if (a->imax) {ierr = PetscFree2(a->imax,a->ilen);CHKERRQ(ierr);} 132dcca6d9dSJed Brown ierr = PetscMalloc2(m,&a->imax,m,&a->ilen);CHKERRQ(ierr); 133f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, 2*m*sizeof(PetscInt));CHKERRQ(ierr); 134e4a0ef16SKarl Rupp 135e4a0ef16SKarl Rupp /* Copy data back from GPU */ 136e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(Agpu->handle1(), Agpu->size1() + 1); 137e4a0ef16SKarl Rupp 138e4a0ef16SKarl Rupp // copy row array 139e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle1(), 0, row_buffer.raw_size(), row_buffer.get()); 140e4a0ef16SKarl Rupp (a->i)[0] = row_buffer[0]; 141e4a0ef16SKarl Rupp for (PetscInt i = 0; i < (PetscInt)Agpu->size1(); ++i) { 142e4a0ef16SKarl Rupp (a->i)[i+1] = row_buffer[i+1]; 143e4a0ef16SKarl Rupp a->imax[i] = a->ilen[i] = a->i[i+1] - a->i[i]; //Set imax[] and ilen[] arrays at the same time as i[] for better cache reuse 144e4a0ef16SKarl Rupp } 145e4a0ef16SKarl Rupp 146e4a0ef16SKarl Rupp // copy column indices 147e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(Agpu->handle2(), Agpu->nnz()); 148e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle2(), 0, col_buffer.raw_size(), col_buffer.get()); 149e4a0ef16SKarl Rupp for (PetscInt i=0; i < (PetscInt)Agpu->nnz(); ++i) 150e4a0ef16SKarl Rupp (a->j)[i] = col_buffer[i]; 151e4a0ef16SKarl Rupp 152e4a0ef16SKarl Rupp // copy nonzero entries directly to destination (no conversion required) 153e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle(), 0, sizeof(PetscScalar)*Agpu->nnz(), a->a); 154e4a0ef16SKarl Rupp 1554cf1874eSKarl Rupp ViennaCLWaitForGPU(); 156023073b3SKarl Rupp /* TODO: Once a->diag is moved out of MatAssemblyEnd(), invalidate it here. */ 157e4a0ef16SKarl Rupp } 1584076e183SKarl Rupp } catch(std::exception const & ex) { 1594076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_LIB, "ViennaCL error: %s", ex.what()); 160e4a0ef16SKarl Rupp } 161e4a0ef16SKarl Rupp 162e4a0ef16SKarl Rupp /* This assembly prevents resetting the flag to PETSC_VIENNACL_CPU and recopying */ 163e4a0ef16SKarl Rupp ierr = MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 164e4a0ef16SKarl Rupp ierr = MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 165e4a0ef16SKarl Rupp 166e4a0ef16SKarl Rupp A->valid_GPU_matrix = PETSC_VIENNACL_BOTH; 1676c4ed002SBarry Smith } else SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL error: Only valid for unallocated GPU matrices"); 168e4a0ef16SKarl Rupp PetscFunctionReturn(0); 169e4a0ef16SKarl Rupp } 170e4a0ef16SKarl Rupp 1712a7a6963SBarry Smith PetscErrorCode MatCreateVecs_SeqAIJViennaCL(Mat mat, Vec *right, Vec *left) 172e4a0ef16SKarl Rupp { 173e4a0ef16SKarl Rupp PetscErrorCode ierr; 17433d57670SJed Brown PetscInt rbs,cbs; 175e4a0ef16SKarl Rupp 176e4a0ef16SKarl Rupp PetscFunctionBegin; 17733d57670SJed Brown ierr = MatGetBlockSizes(mat,&rbs,&cbs);CHKERRQ(ierr); 178e4a0ef16SKarl Rupp if (right) { 179e4a0ef16SKarl Rupp ierr = VecCreate(PetscObjectComm((PetscObject)mat),right);CHKERRQ(ierr); 180e4a0ef16SKarl Rupp ierr = VecSetSizes(*right,mat->cmap->n,PETSC_DETERMINE);CHKERRQ(ierr); 18133d57670SJed Brown ierr = VecSetBlockSize(*right,cbs);CHKERRQ(ierr); 182e4a0ef16SKarl Rupp ierr = VecSetType(*right,VECSEQVIENNACL);CHKERRQ(ierr); 183e4a0ef16SKarl Rupp ierr = PetscLayoutReference(mat->cmap,&(*right)->map);CHKERRQ(ierr); 184e4a0ef16SKarl Rupp } 185e4a0ef16SKarl Rupp if (left) { 186e4a0ef16SKarl Rupp ierr = VecCreate(PetscObjectComm((PetscObject)mat),left);CHKERRQ(ierr); 187e4a0ef16SKarl Rupp ierr = VecSetSizes(*left,mat->rmap->n,PETSC_DETERMINE);CHKERRQ(ierr); 18833d57670SJed Brown ierr = VecSetBlockSize(*left,rbs);CHKERRQ(ierr); 189e4a0ef16SKarl Rupp ierr = VecSetType(*left,VECSEQVIENNACL);CHKERRQ(ierr); 190e4a0ef16SKarl Rupp ierr = PetscLayoutReference(mat->rmap,&(*left)->map);CHKERRQ(ierr); 191e4a0ef16SKarl Rupp } 192e4a0ef16SKarl Rupp PetscFunctionReturn(0); 193e4a0ef16SKarl Rupp } 194e4a0ef16SKarl Rupp 195e4a0ef16SKarl Rupp PetscErrorCode MatMult_SeqAIJViennaCL(Mat A,Vec xx,Vec yy) 196e4a0ef16SKarl Rupp { 197e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 198e4a0ef16SKarl Rupp PetscErrorCode ierr; 199e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 2000d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL; 2010d73d530SKarl Rupp ViennaCLVector *ygpu=NULL; 202e4a0ef16SKarl Rupp 203e4a0ef16SKarl Rupp PetscFunctionBegin; 20467c87b7fSKarl Rupp if (A->rmap->n > 0 && A->cmap->n > 0) { 205e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 206e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(yy,&ygpu);CHKERRQ(ierr); 207e4a0ef16SKarl Rupp try { 208e4a0ef16SKarl Rupp *ygpu = viennacl::linalg::prod(*viennaclstruct->mat,*xgpu); 2094cf1874eSKarl Rupp ViennaCLWaitForGPU(); 2104076e183SKarl Rupp } catch (std::exception const & ex) { 2114076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 212e4a0ef16SKarl Rupp } 213e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 214e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(yy,&ygpu);CHKERRQ(ierr); 2159b66742cSDave May ierr = PetscLogFlops(2.0*a->nz - a->nonzerorowcnt);CHKERRQ(ierr); 21667c87b7fSKarl Rupp } 217e4a0ef16SKarl Rupp PetscFunctionReturn(0); 218e4a0ef16SKarl Rupp } 219e4a0ef16SKarl Rupp 220e4a0ef16SKarl Rupp 221e4a0ef16SKarl Rupp 222e4a0ef16SKarl Rupp PetscErrorCode MatMultAdd_SeqAIJViennaCL(Mat A,Vec xx,Vec yy,Vec zz) 223e4a0ef16SKarl Rupp { 224e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 225e4a0ef16SKarl Rupp PetscErrorCode ierr; 226e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 2270d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL,*ygpu=NULL; 2280d73d530SKarl Rupp ViennaCLVector *zgpu=NULL; 229e4a0ef16SKarl Rupp 230e4a0ef16SKarl Rupp PetscFunctionBegin; 23167c87b7fSKarl Rupp if (A->rmap->n > 0 && A->cmap->n > 0) { 232e4a0ef16SKarl Rupp try { 233e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 234e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(yy,&ygpu);CHKERRQ(ierr); 235e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(zz,&zgpu);CHKERRQ(ierr); 236e4a0ef16SKarl Rupp 237e4a0ef16SKarl Rupp if (a->compressedrow.use) { 238a3430c56SKarl Rupp ViennaCLVector temp = viennacl::linalg::prod(*viennaclstruct->compressed_mat, *xgpu); 239e4a0ef16SKarl Rupp *zgpu = *ygpu + temp; 2404cf1874eSKarl Rupp ViennaCLWaitForGPU(); 241e4a0ef16SKarl Rupp } else { 242a3430c56SKarl Rupp if (zz == xx || zz == yy) { //temporary required 243a3430c56SKarl Rupp ViennaCLVector temp = viennacl::linalg::prod(*viennaclstruct->mat, *xgpu); 244a3430c56SKarl Rupp *zgpu = *ygpu; 245a3430c56SKarl Rupp *zgpu += temp; 246a3430c56SKarl Rupp ViennaCLWaitForGPU(); 247a3430c56SKarl Rupp } else { 248a3430c56SKarl Rupp *viennaclstruct->tempvec = viennacl::linalg::prod(*viennaclstruct->mat, *xgpu); 249a3430c56SKarl Rupp *zgpu = *ygpu + *viennaclstruct->tempvec; 2504cf1874eSKarl Rupp ViennaCLWaitForGPU(); 251e4a0ef16SKarl Rupp } 252e4a0ef16SKarl Rupp } 253e4a0ef16SKarl Rupp 254e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 255e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(yy,&ygpu);CHKERRQ(ierr); 256e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(zz,&zgpu);CHKERRQ(ierr); 257e4a0ef16SKarl Rupp 2584076e183SKarl Rupp } catch(std::exception const & ex) { 2594076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 260e4a0ef16SKarl Rupp } 261e4a0ef16SKarl Rupp ierr = PetscLogFlops(2.0*a->nz);CHKERRQ(ierr); 26267c87b7fSKarl Rupp } 263e4a0ef16SKarl Rupp PetscFunctionReturn(0); 264e4a0ef16SKarl Rupp } 265e4a0ef16SKarl Rupp 266e4a0ef16SKarl Rupp PetscErrorCode MatAssemblyEnd_SeqAIJViennaCL(Mat A,MatAssemblyType mode) 267e4a0ef16SKarl Rupp { 268e4a0ef16SKarl Rupp PetscErrorCode ierr; 269e4a0ef16SKarl Rupp 270e4a0ef16SKarl Rupp PetscFunctionBegin; 271e4a0ef16SKarl Rupp ierr = MatAssemblyEnd_SeqAIJ(A,mode);CHKERRQ(ierr); 272e4a0ef16SKarl Rupp ierr = MatViennaCLCopyToGPU(A);CHKERRQ(ierr); 273e4a0ef16SKarl Rupp PetscFunctionReturn(0); 274e4a0ef16SKarl Rupp } 275e4a0ef16SKarl Rupp 276e4a0ef16SKarl Rupp /* --------------------------------------------------------------------------------*/ 277e4a0ef16SKarl Rupp /*@ 278e4a0ef16SKarl Rupp MatCreateSeqAIJViennaCL - Creates a sparse matrix in AIJ (compressed row) format 27919fddfadSKarl Rupp (the default parallel PETSc format). This matrix will ultimately be pushed down 280e4a0ef16SKarl Rupp to GPUs and use the ViennaCL library for calculations. For good matrix 281e4a0ef16SKarl Rupp assembly performance the user should preallocate the matrix storage by setting 282e4a0ef16SKarl Rupp the parameter nz (or the array nnz). By setting these parameters accurately, 283e4a0ef16SKarl Rupp performance during matrix assembly can be increased substantially. 284e4a0ef16SKarl Rupp 285e4a0ef16SKarl Rupp 286e4a0ef16SKarl Rupp Collective on MPI_Comm 287e4a0ef16SKarl Rupp 288e4a0ef16SKarl Rupp Input Parameters: 289e4a0ef16SKarl Rupp + comm - MPI communicator, set to PETSC_COMM_SELF 290e4a0ef16SKarl Rupp . m - number of rows 291e4a0ef16SKarl Rupp . n - number of columns 292e4a0ef16SKarl Rupp . nz - number of nonzeros per row (same for all rows) 293e4a0ef16SKarl Rupp - nnz - array containing the number of nonzeros in the various rows 294e4a0ef16SKarl Rupp (possibly different for each row) or NULL 295e4a0ef16SKarl Rupp 296e4a0ef16SKarl Rupp Output Parameter: 297e4a0ef16SKarl Rupp . A - the matrix 298e4a0ef16SKarl Rupp 299e4a0ef16SKarl Rupp It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 300e4a0ef16SKarl Rupp MatXXXXSetPreallocation() paradigm instead of this routine directly. 301e4a0ef16SKarl Rupp [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 302e4a0ef16SKarl Rupp 303e4a0ef16SKarl Rupp Notes: 304e4a0ef16SKarl Rupp If nnz is given then nz is ignored 305e4a0ef16SKarl Rupp 306e4a0ef16SKarl Rupp The AIJ format (also called the Yale sparse matrix format or 307e4a0ef16SKarl Rupp compressed row storage), is fully compatible with standard Fortran 77 308e4a0ef16SKarl Rupp storage. That is, the stored row and column indices can begin at 309e4a0ef16SKarl Rupp either one (as in Fortran) or zero. See the users' manual for details. 310e4a0ef16SKarl Rupp 311e4a0ef16SKarl Rupp Specify the preallocated storage with either nz or nnz (not both). 312e4a0ef16SKarl Rupp Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 313e4a0ef16SKarl Rupp allocation. For large problems you MUST preallocate memory or you 314e4a0ef16SKarl Rupp will get TERRIBLE performance, see the users' manual chapter on matrices. 315e4a0ef16SKarl Rupp 316e4a0ef16SKarl Rupp Level: intermediate 317e4a0ef16SKarl Rupp 318e4a0ef16SKarl Rupp .seealso: MatCreate(), MatCreateAIJ(), MatCreateAIJCUSP(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ() 319e4a0ef16SKarl Rupp 320e4a0ef16SKarl Rupp @*/ 321e4a0ef16SKarl Rupp PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 322e4a0ef16SKarl Rupp { 323e4a0ef16SKarl Rupp PetscErrorCode ierr; 324e4a0ef16SKarl Rupp 325e4a0ef16SKarl Rupp PetscFunctionBegin; 326e4a0ef16SKarl Rupp ierr = MatCreate(comm,A);CHKERRQ(ierr); 327e4a0ef16SKarl Rupp ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 328e4a0ef16SKarl Rupp ierr = MatSetType(*A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 329e4a0ef16SKarl Rupp ierr = MatSeqAIJSetPreallocation_SeqAIJ(*A,nz,(PetscInt*)nnz);CHKERRQ(ierr); 330e4a0ef16SKarl Rupp PetscFunctionReturn(0); 331e4a0ef16SKarl Rupp } 332e4a0ef16SKarl Rupp 333e4a0ef16SKarl Rupp 334e4a0ef16SKarl Rupp PetscErrorCode MatDestroy_SeqAIJViennaCL(Mat A) 335e4a0ef16SKarl Rupp { 336e4a0ef16SKarl Rupp PetscErrorCode ierr; 337e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclcontainer = (Mat_SeqAIJViennaCL*)A->spptr; 338e4a0ef16SKarl Rupp 339e4a0ef16SKarl Rupp PetscFunctionBegin; 340e4a0ef16SKarl Rupp try { 3416447cd05SKarl Rupp if (viennaclcontainer) { 3426447cd05SKarl Rupp delete viennaclcontainer->tempvec; 3436447cd05SKarl Rupp delete viennaclcontainer->mat; 3446447cd05SKarl Rupp delete viennaclcontainer->compressed_mat; 345e4a0ef16SKarl Rupp delete viennaclcontainer; 3466447cd05SKarl Rupp } 347e4a0ef16SKarl Rupp A->valid_GPU_matrix = PETSC_VIENNACL_UNALLOCATED; 3484076e183SKarl Rupp } catch(std::exception const & ex) { 3494076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 350e4a0ef16SKarl Rupp } 3518713a8baSPatrick Sanan 3528713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",NULL);CHKERRQ(ierr); 3538713a8baSPatrick Sanan 354e4a0ef16SKarl Rupp /* this next line is because MatDestroy tries to PetscFree spptr if it is not zero, and PetscFree only works if the memory was allocated with PetscNew or PetscMalloc, which don't call the constructor */ 355e4a0ef16SKarl Rupp A->spptr = 0; 356e4a0ef16SKarl Rupp ierr = MatDestroy_SeqAIJ(A);CHKERRQ(ierr); 357e4a0ef16SKarl Rupp PetscFunctionReturn(0); 358e4a0ef16SKarl Rupp } 359e4a0ef16SKarl Rupp 360e4a0ef16SKarl Rupp 361e4a0ef16SKarl Rupp PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJViennaCL(Mat B) 362e4a0ef16SKarl Rupp { 363e4a0ef16SKarl Rupp PetscErrorCode ierr; 364e4a0ef16SKarl Rupp 365e4a0ef16SKarl Rupp PetscFunctionBegin; 366e4a0ef16SKarl Rupp ierr = MatCreate_SeqAIJ(B);CHKERRQ(ierr); 3678713a8baSPatrick Sanan ierr = MatConvert_SeqAIJ_SeqAIJViennaCL(B,MATSEQAIJVIENNACL,MAT_INPLACE_MATRIX,&B); 3688713a8baSPatrick Sanan PetscFunctionReturn(0); 3698713a8baSPatrick Sanan } 3708713a8baSPatrick Sanan 371*c3cca76eSKarl Rupp static PetscErrorCode MatDuplicate_SeqAIJViennaCL(Mat A,MatDuplicateOption cpvalues,Mat *B) 372*c3cca76eSKarl Rupp { 373*c3cca76eSKarl Rupp PetscErrorCode ierr; 374*c3cca76eSKarl Rupp Mat C; 375*c3cca76eSKarl Rupp 376*c3cca76eSKarl Rupp PetscFunctionBegin; 377*c3cca76eSKarl Rupp ierr = MatDuplicate_SeqAIJ(A,cpvalues,B);CHKERRQ(ierr); 378*c3cca76eSKarl Rupp C = *B; 379*c3cca76eSKarl Rupp 380*c3cca76eSKarl Rupp C->ops->mult = MatMult_SeqAIJViennaCL; 381*c3cca76eSKarl Rupp C->ops->multadd = MatMultAdd_SeqAIJViennaCL; 382*c3cca76eSKarl Rupp C->ops->assemblyend = MatAssemblyEnd_SeqAIJViennaCL; 383*c3cca76eSKarl Rupp C->ops->destroy = MatDestroy_SeqAIJViennaCL; 384*c3cca76eSKarl Rupp C->ops->getvecs = MatCreateVecs_SeqAIJViennaCL; 385*c3cca76eSKarl Rupp C->ops->duplicate = MatDuplicate_SeqAIJViennaCL; 386*c3cca76eSKarl Rupp 387*c3cca76eSKarl Rupp C->spptr = new Mat_SeqAIJViennaCL(); 388*c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->tempvec = NULL; 389*c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->mat = NULL; 390*c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->compressed_mat = NULL; 391*c3cca76eSKarl Rupp 392*c3cca76eSKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)C,MATSEQAIJVIENNACL);CHKERRQ(ierr); 393*c3cca76eSKarl Rupp 394*c3cca76eSKarl Rupp C->valid_GPU_matrix = PETSC_VIENNACL_UNALLOCATED; 395*c3cca76eSKarl Rupp 396*c3cca76eSKarl Rupp /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 397*c3cca76eSKarl Rupp if (C->assembled) { 398*c3cca76eSKarl Rupp ierr = MatViennaCLCopyToGPU(C);CHKERRQ(ierr); 399*c3cca76eSKarl Rupp } 400*c3cca76eSKarl Rupp 401*c3cca76eSKarl Rupp PetscFunctionReturn(0); 402*c3cca76eSKarl Rupp } 403*c3cca76eSKarl Rupp 4048713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A,MatType type,MatReuse reuse,Mat *newmat) 4058713a8baSPatrick Sanan { 4068713a8baSPatrick Sanan PetscErrorCode ierr; 4078713a8baSPatrick Sanan Mat B; 4088713a8baSPatrick Sanan Mat_SeqAIJ *aij; 4098713a8baSPatrick Sanan 4108713a8baSPatrick Sanan PetscFunctionBegin; 4118713a8baSPatrick Sanan 4128713a8baSPatrick Sanan if (reuse == MAT_REUSE_MATRIX) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"MAT_REUSE_MATRIX is not supported. Consider using MAT_INPLACE_MATRIX instead"); 4138713a8baSPatrick Sanan 4148713a8baSPatrick Sanan if (reuse == MAT_INITIAL_MATRIX) { 4158713a8baSPatrick Sanan ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 4168713a8baSPatrick Sanan } 4178713a8baSPatrick Sanan 4188713a8baSPatrick Sanan B = *newmat; 4198713a8baSPatrick Sanan 420e4a0ef16SKarl Rupp aij = (Mat_SeqAIJ*)B->data; 421e4a0ef16SKarl Rupp aij->inode.use = PETSC_FALSE; 4228713a8baSPatrick Sanan 423e4a0ef16SKarl Rupp B->ops->mult = MatMult_SeqAIJViennaCL; 424e4a0ef16SKarl Rupp B->ops->multadd = MatMultAdd_SeqAIJViennaCL; 425e4a0ef16SKarl Rupp B->spptr = new Mat_SeqAIJViennaCL(); 426e4a0ef16SKarl Rupp 427a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->tempvec = NULL; 428a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->mat = NULL; 429a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->compressed_mat = NULL; 430e4a0ef16SKarl Rupp 431e4a0ef16SKarl Rupp B->ops->assemblyend = MatAssemblyEnd_SeqAIJViennaCL; 432e4a0ef16SKarl Rupp B->ops->destroy = MatDestroy_SeqAIJViennaCL; 4332a7a6963SBarry Smith B->ops->getvecs = MatCreateVecs_SeqAIJViennaCL; 434*c3cca76eSKarl Rupp B->ops->duplicate = MatDuplicate_SeqAIJViennaCL; 435e4a0ef16SKarl Rupp 436e4a0ef16SKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQAIJVIENNACL);CHKERRQ(ierr); 437e4a0ef16SKarl Rupp 4388713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",MatConvert_SeqAIJ_SeqAIJViennaCL);CHKERRQ(ierr); 4398713a8baSPatrick Sanan 440e4a0ef16SKarl Rupp B->valid_GPU_matrix = PETSC_VIENNACL_UNALLOCATED; 4418713a8baSPatrick Sanan 4428713a8baSPatrick Sanan /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 4438713a8baSPatrick Sanan if (B->assembled) { 4448713a8baSPatrick Sanan ierr = MatViennaCLCopyToGPU(B);CHKERRQ(ierr); 4458713a8baSPatrick Sanan } 4468713a8baSPatrick Sanan 447e4a0ef16SKarl Rupp PetscFunctionReturn(0); 448e4a0ef16SKarl Rupp } 449e4a0ef16SKarl Rupp 450e4a0ef16SKarl Rupp 451e4a0ef16SKarl Rupp /*M 452e4a0ef16SKarl Rupp MATSEQAIJVIENNACL - MATAIJVIENNACL = "aijviennacl" = "seqaijviennacl" - A matrix type to be used for sparse matrices. 453e4a0ef16SKarl Rupp 454e4a0ef16SKarl Rupp A matrix type type whose data resides on GPUs. These matrices are in CSR format by 455e4a0ef16SKarl Rupp default. All matrix calculations are performed using the ViennaCL library. 456e4a0ef16SKarl Rupp 457e4a0ef16SKarl Rupp Options Database Keys: 458e4a0ef16SKarl Rupp + -mat_type aijviennacl - sets the matrix type to "seqaijviennacl" during a call to MatSetFromOptions() 459e4a0ef16SKarl Rupp . -mat_viennacl_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 460e4a0ef16SKarl Rupp - -mat_viennacl_mult_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 461e4a0ef16SKarl Rupp 462e4a0ef16SKarl Rupp Level: beginner 463e4a0ef16SKarl Rupp 464e4a0ef16SKarl Rupp .seealso: MatCreateSeqAIJViennaCL(), MATAIJVIENNACL, MatCreateAIJViennaCL() 465e4a0ef16SKarl Rupp M*/ 466e4a0ef16SKarl Rupp 46772367587SKarl Rupp 46872367587SKarl Rupp PETSC_EXTERN PetscErrorCode MatSolverPackageRegister_ViennaCL(void) 46972367587SKarl Rupp { 47072367587SKarl Rupp PetscErrorCode ierr; 47172367587SKarl Rupp 47272367587SKarl Rupp PetscFunctionBegin; 47372367587SKarl Rupp ierr = MatSolverPackageRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_LU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 47472367587SKarl Rupp ierr = MatSolverPackageRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_CHOLESKY,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 47572367587SKarl Rupp ierr = MatSolverPackageRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ILU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 47672367587SKarl Rupp ierr = MatSolverPackageRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ICC,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 47772367587SKarl Rupp PetscFunctionReturn(0); 47872367587SKarl Rupp } 47972367587SKarl Rupp 480