1e4a0ef16SKarl Rupp 2e4a0ef16SKarl Rupp 3e4a0ef16SKarl Rupp /* 4e4a0ef16SKarl Rupp Defines the basic matrix operations for the AIJ (compressed row) 5e4a0ef16SKarl Rupp matrix storage format. 6e4a0ef16SKarl Rupp */ 7e4a0ef16SKarl Rupp 8aaa7dc30SBarry Smith #include <petscconf.h> 9aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/aij.h> /*I "petscmat.h" I*/ 10aaa7dc30SBarry Smith #include <petscbt.h> 11aaa7dc30SBarry Smith #include <../src/vec/vec/impls/dvecimpl.h> 12af0996ceSBarry Smith #include <petsc/private/vecimpl.h> 13e4a0ef16SKarl Rupp 14aaa7dc30SBarry Smith #include <../src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h> 15e4a0ef16SKarl Rupp 16e4a0ef16SKarl Rupp 17e4a0ef16SKarl Rupp #include <algorithm> 18e4a0ef16SKarl Rupp #include <vector> 19e4a0ef16SKarl Rupp #include <string> 20e4a0ef16SKarl Rupp 21e4a0ef16SKarl Rupp #include "viennacl/linalg/prod.hpp" 22e4a0ef16SKarl Rupp 238713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A, MatType type, MatReuse reuse, Mat *newmat); 2472367587SKarl Rupp PETSC_INTERN PetscErrorCode MatGetFactor_seqaij_petsc(Mat,MatFactorType,Mat*); 2572367587SKarl Rupp 268713a8baSPatrick Sanan 27e4a0ef16SKarl Rupp PetscErrorCode MatViennaCLCopyToGPU(Mat A) 28e4a0ef16SKarl Rupp { 29e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 30e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 31e4a0ef16SKarl Rupp PetscErrorCode ierr; 32e4a0ef16SKarl Rupp 33e4a0ef16SKarl Rupp PetscFunctionBegin; 34bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { //some OpenCL SDKs have issues with buffers of size 0 35b8ced49eSKarl Rupp if (A->valid_GPU_matrix == PETSC_OFFLOAD_UNALLOCATED || A->valid_GPU_matrix == PETSC_OFFLOAD_CPU) { 36e4a0ef16SKarl Rupp ierr = PetscLogEventBegin(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 37e4a0ef16SKarl Rupp 38e4a0ef16SKarl Rupp try { 39e4a0ef16SKarl Rupp if (a->compressedrow.use) { 40a3430c56SKarl Rupp if (!viennaclstruct->compressed_mat) viennaclstruct->compressed_mat = new ViennaCLCompressedAIJMatrix(); 41e4a0ef16SKarl Rupp 42a3430c56SKarl Rupp // Since PetscInt is different from cl_uint, we have to convert: 43a3430c56SKarl Rupp viennacl::backend::mem_handle dummy; 44e4a0ef16SKarl Rupp 45a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, a->compressedrow.nrows+1); 46a3430c56SKarl Rupp for (PetscInt i=0; i<=a->compressedrow.nrows; ++i) 47a3430c56SKarl Rupp row_buffer.set(i, (a->compressedrow.i)[i]); 48e4a0ef16SKarl Rupp 49a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_indices; row_indices.raw_resize(dummy, a->compressedrow.nrows); 50a3430c56SKarl Rupp for (PetscInt i=0; i<a->compressedrow.nrows; ++i) 51a3430c56SKarl Rupp row_indices.set(i, (a->compressedrow.rindex)[i]); 52a3430c56SKarl Rupp 53a3430c56SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 54a3430c56SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 55a3430c56SKarl Rupp col_buffer.set(i, (a->j)[i]); 56a3430c56SKarl Rupp 57a3430c56SKarl Rupp viennaclstruct->compressed_mat->set(row_buffer.get(), row_indices.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->compressedrow.nrows, a->nz); 584863603aSSatish Balay ierr = PetscLogCpuToGpu(((2*a->compressedrow.nrows)+1+a->nz)*sizeof(PetscInt) + (a->nz)*sizeof(PetscScalar));CHKERRQ(ierr); 59e4a0ef16SKarl Rupp } else { 60a3430c56SKarl Rupp if (!viennaclstruct->mat) viennaclstruct->mat = new ViennaCLAIJMatrix(); 61e4a0ef16SKarl Rupp 62e4a0ef16SKarl Rupp // Since PetscInt is in general different from cl_uint, we have to convert: 63e4a0ef16SKarl Rupp viennacl::backend::mem_handle dummy; 64e4a0ef16SKarl Rupp 65e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(dummy, A->rmap->n+1); 66e4a0ef16SKarl Rupp for (PetscInt i=0; i<=A->rmap->n; ++i) 67e4a0ef16SKarl Rupp row_buffer.set(i, (a->i)[i]); 68e4a0ef16SKarl Rupp 69e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(dummy, a->nz); 70e4a0ef16SKarl Rupp for (PetscInt i=0; i<a->nz; ++i) 71e4a0ef16SKarl Rupp col_buffer.set(i, (a->j)[i]); 72e4a0ef16SKarl Rupp 73e4a0ef16SKarl Rupp viennaclstruct->mat->set(row_buffer.get(), col_buffer.get(), a->a, A->rmap->n, A->cmap->n, a->nz); 744863603aSSatish Balay ierr = PetscLogCpuToGpu(((A->rmap->n+1)+a->nz)*sizeof(PetscInt)+(a->nz)*sizeof(PetscScalar));CHKERRQ(ierr); 75e4a0ef16SKarl Rupp } 764cf1874eSKarl Rupp ViennaCLWaitForGPU(); 774076e183SKarl Rupp } catch(std::exception const & ex) { 784076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 79e4a0ef16SKarl Rupp } 80e4a0ef16SKarl Rupp 81a3430c56SKarl Rupp // Create temporary vector for v += A*x: 82a3430c56SKarl Rupp if (viennaclstruct->tempvec) { 839b66742cSDave May if (viennaclstruct->tempvec->size() != static_cast<std::size_t>(A->rmap->n)) { 84a3430c56SKarl Rupp delete (ViennaCLVector*)viennaclstruct->tempvec; 859b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 86a3430c56SKarl Rupp } else { 87a3430c56SKarl Rupp viennaclstruct->tempvec->clear(); 88a3430c56SKarl Rupp } 89a3430c56SKarl Rupp } else { 909b66742cSDave May viennaclstruct->tempvec = new ViennaCLVector(A->rmap->n); 91a3430c56SKarl Rupp } 92a3430c56SKarl Rupp 93b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_BOTH; 94e4a0ef16SKarl Rupp 95e4a0ef16SKarl Rupp ierr = PetscLogEventEnd(MAT_ViennaCLCopyToGPU,A,0,0,0);CHKERRQ(ierr); 96e4a0ef16SKarl Rupp } 9767c87b7fSKarl Rupp } 98e4a0ef16SKarl Rupp PetscFunctionReturn(0); 99e4a0ef16SKarl Rupp } 100e4a0ef16SKarl Rupp 1010d73d530SKarl Rupp PetscErrorCode MatViennaCLCopyFromGPU(Mat A, const ViennaCLAIJMatrix *Agpu) 102e4a0ef16SKarl Rupp { 103*f38c1e66SStefano Zampini Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 104e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 105e4a0ef16SKarl Rupp PetscInt m = A->rmap->n; 106e4a0ef16SKarl Rupp PetscErrorCode ierr; 107e4a0ef16SKarl Rupp 108e4a0ef16SKarl Rupp PetscFunctionBegin; 109*f38c1e66SStefano Zampini if (A->valid_GPU_matrix == PETSC_OFFLOAD_BOTH) PetscFunctionReturn(0); 110*f38c1e66SStefano Zampini if (A->valid_GPU_matrix == PETSC_OFFLOAD_UNALLOCATED && Agpu) { 111e4a0ef16SKarl Rupp try { 1126c4ed002SBarry Smith if (a->compressedrow.use) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL: Cannot handle row compression for GPU matrices"); 1136c4ed002SBarry Smith else { 114e4a0ef16SKarl Rupp 115e4a0ef16SKarl Rupp if ((PetscInt)Agpu->size1() != m) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_ARG_SIZ, "GPU matrix has %d rows, should be %d", Agpu->size1(), m); 116e4a0ef16SKarl Rupp a->nz = Agpu->nnz(); 117e4a0ef16SKarl Rupp a->maxnz = a->nz; /* Since we allocate exactly the right amount */ 118e4a0ef16SKarl Rupp A->preallocated = PETSC_TRUE; 119e4a0ef16SKarl Rupp if (a->singlemalloc) { 120e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree3(a->a,a->j,a->i);CHKERRQ(ierr);} 121e4a0ef16SKarl Rupp } else { 122e4a0ef16SKarl Rupp if (a->i) {ierr = PetscFree(a->i);CHKERRQ(ierr);} 123e4a0ef16SKarl Rupp if (a->j) {ierr = PetscFree(a->j);CHKERRQ(ierr);} 124e4a0ef16SKarl Rupp if (a->a) {ierr = PetscFree(a->a);CHKERRQ(ierr);} 125e4a0ef16SKarl Rupp } 126dcca6d9dSJed Brown ierr = PetscMalloc3(a->nz,&a->a,a->nz,&a->j,m+1,&a->i);CHKERRQ(ierr); 127f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, a->nz*(sizeof(PetscScalar)+sizeof(PetscInt))+(m+1)*sizeof(PetscInt));CHKERRQ(ierr); 128e4a0ef16SKarl Rupp 129e4a0ef16SKarl Rupp a->singlemalloc = PETSC_TRUE; 130e4a0ef16SKarl Rupp 131e4a0ef16SKarl Rupp /* Setup row lengths */ 132071fcb05SBarry Smith ierr = PetscFree(a->imax);CHKERRQ(ierr); 133071fcb05SBarry Smith ierr = PetscFree(a->ilen);CHKERRQ(ierr); 134071fcb05SBarry Smith ierr = PetscMalloc1(m,&a->imax);CHKERRQ(ierr); 135071fcb05SBarry Smith ierr = PetscMalloc1(m,&a->ilen);CHKERRQ(ierr); 136f7daeb2aSKarl Rupp ierr = PetscLogObjectMemory((PetscObject)A, 2*m*sizeof(PetscInt));CHKERRQ(ierr); 137e4a0ef16SKarl Rupp 138e4a0ef16SKarl Rupp /* Copy data back from GPU */ 139e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> row_buffer; row_buffer.raw_resize(Agpu->handle1(), Agpu->size1() + 1); 140e4a0ef16SKarl Rupp 141e4a0ef16SKarl Rupp // copy row array 142e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle1(), 0, row_buffer.raw_size(), row_buffer.get()); 143e4a0ef16SKarl Rupp (a->i)[0] = row_buffer[0]; 144e4a0ef16SKarl Rupp for (PetscInt i = 0; i < (PetscInt)Agpu->size1(); ++i) { 145e4a0ef16SKarl Rupp (a->i)[i+1] = row_buffer[i+1]; 146e4a0ef16SKarl Rupp a->imax[i] = a->ilen[i] = a->i[i+1] - a->i[i]; //Set imax[] and ilen[] arrays at the same time as i[] for better cache reuse 147e4a0ef16SKarl Rupp } 148e4a0ef16SKarl Rupp 149e4a0ef16SKarl Rupp // copy column indices 150e4a0ef16SKarl Rupp viennacl::backend::typesafe_host_array<unsigned int> col_buffer; col_buffer.raw_resize(Agpu->handle2(), Agpu->nnz()); 151e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle2(), 0, col_buffer.raw_size(), col_buffer.get()); 152e4a0ef16SKarl Rupp for (PetscInt i=0; i < (PetscInt)Agpu->nnz(); ++i) 153e4a0ef16SKarl Rupp (a->j)[i] = col_buffer[i]; 154e4a0ef16SKarl Rupp 155e4a0ef16SKarl Rupp // copy nonzero entries directly to destination (no conversion required) 156e4a0ef16SKarl Rupp viennacl::backend::memory_read(Agpu->handle(), 0, sizeof(PetscScalar)*Agpu->nnz(), a->a); 157e4a0ef16SKarl Rupp 1584863603aSSatish Balay ierr = PetscLogGpuToCpu(row_buffer.raw_size()+col_buffer.raw_size()+(Agpu->nnz()*sizeof(PetscScalar)));CHKERRQ(ierr); 1594cf1874eSKarl Rupp ViennaCLWaitForGPU(); 160023073b3SKarl Rupp /* TODO: Once a->diag is moved out of MatAssemblyEnd(), invalidate it here. */ 161e4a0ef16SKarl Rupp } 1624076e183SKarl Rupp } catch(std::exception const & ex) { 1634076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_LIB, "ViennaCL error: %s", ex.what()); 164e4a0ef16SKarl Rupp } 165*f38c1e66SStefano Zampini } else if (A->valid_GPU_matrix == PETSC_OFFLOAD_UNALLOCATED) { 166*f38c1e66SStefano Zampini PetscFunctionReturn(0); 167*f38c1e66SStefano Zampini } else { 168*f38c1e66SStefano Zampini if (!Agpu && A->valid_GPU_matrix != PETSC_OFFLOAD_GPU) PetscFunctionReturn(0); 169e4a0ef16SKarl Rupp 170*f38c1e66SStefano Zampini if (a->compressedrow.use) SETERRQ(PETSC_COMM_WORLD, PETSC_ERR_ARG_WRONG, "ViennaCL: Cannot handle row compression for GPU matrices"); 171*f38c1e66SStefano Zampini if (!Agpu) { 172*f38c1e66SStefano Zampini viennacl::backend::memory_read(viennaclstruct->mat->handle(), 0, sizeof(PetscScalar)*viennaclstruct->mat->nnz(), a->a); 173*f38c1e66SStefano Zampini } else { 174*f38c1e66SStefano Zampini viennacl::backend::memory_read(Agpu->handle(), 0, sizeof(PetscScalar)*Agpu->nnz(), a->a); 175*f38c1e66SStefano Zampini } 176*f38c1e66SStefano Zampini } 177*f38c1e66SStefano Zampini A->valid_GPU_matrix = PETSC_OFFLOAD_BOTH; 178b8ced49eSKarl Rupp /* This assembly prevents resetting the flag to PETSC_OFFLOAD_CPU and recopying */ 179e4a0ef16SKarl Rupp ierr = MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 180e4a0ef16SKarl Rupp ierr = MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 181e4a0ef16SKarl Rupp PetscFunctionReturn(0); 182e4a0ef16SKarl Rupp } 183e4a0ef16SKarl Rupp 184e4a0ef16SKarl Rupp PetscErrorCode MatMult_SeqAIJViennaCL(Mat A,Vec xx,Vec yy) 185e4a0ef16SKarl Rupp { 186e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 187e4a0ef16SKarl Rupp PetscErrorCode ierr; 188e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 1890d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL; 1900d73d530SKarl Rupp ViennaCLVector *ygpu=NULL; 191e4a0ef16SKarl Rupp 192e4a0ef16SKarl Rupp PetscFunctionBegin; 193bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { 194e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 195e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(yy,&ygpu);CHKERRQ(ierr); 1967a052e47Shannah_mairs ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 197e4a0ef16SKarl Rupp try { 198b7832b47SStefano Zampini if (a->compressedrow.use) { 199b7832b47SStefano Zampini *ygpu = viennacl::linalg::prod(*viennaclstruct->compressed_mat, *xgpu); 200b7832b47SStefano Zampini } else { 201e4a0ef16SKarl Rupp *ygpu = viennacl::linalg::prod(*viennaclstruct->mat,*xgpu); 202b7832b47SStefano Zampini } 2034cf1874eSKarl Rupp ViennaCLWaitForGPU(); 2044076e183SKarl Rupp } catch (std::exception const & ex) { 2054076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 206e4a0ef16SKarl Rupp } 207958c4211Shannah_mairs ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 208e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 209e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(yy,&ygpu);CHKERRQ(ierr); 210958c4211Shannah_mairs ierr = PetscLogGpuFlops(2.0*a->nz - a->nonzerorowcnt);CHKERRQ(ierr); 211bf1781e8SStefano Zampini } else { 212bf1781e8SStefano Zampini ierr = VecSet(yy,0);CHKERRQ(ierr); 21367c87b7fSKarl Rupp } 214e4a0ef16SKarl Rupp PetscFunctionReturn(0); 215e4a0ef16SKarl Rupp } 216e4a0ef16SKarl Rupp 217e4a0ef16SKarl Rupp PetscErrorCode MatMultAdd_SeqAIJViennaCL(Mat A,Vec xx,Vec yy,Vec zz) 218e4a0ef16SKarl Rupp { 219e4a0ef16SKarl Rupp Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 220e4a0ef16SKarl Rupp PetscErrorCode ierr; 221e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclstruct = (Mat_SeqAIJViennaCL*)A->spptr; 2220d73d530SKarl Rupp const ViennaCLVector *xgpu=NULL,*ygpu=NULL; 2230d73d530SKarl Rupp ViennaCLVector *zgpu=NULL; 224e4a0ef16SKarl Rupp 225e4a0ef16SKarl Rupp PetscFunctionBegin; 226bf1781e8SStefano Zampini if (A->rmap->n > 0 && A->cmap->n > 0 && a->nz) { 227e4a0ef16SKarl Rupp try { 228e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(xx,&xgpu);CHKERRQ(ierr); 229e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayRead(yy,&ygpu);CHKERRQ(ierr); 230e4a0ef16SKarl Rupp ierr = VecViennaCLGetArrayWrite(zz,&zgpu);CHKERRQ(ierr); 2317a052e47Shannah_mairs ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 232*f38c1e66SStefano Zampini if (a->compressedrow.use) *viennaclstruct->tempvec = viennacl::linalg::prod(*viennaclstruct->compressed_mat, *xgpu); 233*f38c1e66SStefano Zampini else *viennaclstruct->tempvec = viennacl::linalg::prod(*viennaclstruct->mat, *xgpu); 234*f38c1e66SStefano Zampini if (zz != yy) *zgpu = *ygpu + *viennaclstruct->tempvec; 235*f38c1e66SStefano Zampini else *zgpu += *viennaclstruct->tempvec; 2364cf1874eSKarl Rupp ViennaCLWaitForGPU(); 237958c4211Shannah_mairs ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 238e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(xx,&xgpu);CHKERRQ(ierr); 239e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayRead(yy,&ygpu);CHKERRQ(ierr); 240e4a0ef16SKarl Rupp ierr = VecViennaCLRestoreArrayWrite(zz,&zgpu);CHKERRQ(ierr); 241e4a0ef16SKarl Rupp 2424076e183SKarl Rupp } catch(std::exception const & ex) { 2434076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 244e4a0ef16SKarl Rupp } 245958c4211Shannah_mairs ierr = PetscLogGpuFlops(2.0*a->nz);CHKERRQ(ierr); 246bf1781e8SStefano Zampini } else { 247bf1781e8SStefano Zampini ierr = VecCopy(yy,zz);CHKERRQ(ierr); 24867c87b7fSKarl Rupp } 249e4a0ef16SKarl Rupp PetscFunctionReturn(0); 250e4a0ef16SKarl Rupp } 251e4a0ef16SKarl Rupp 252e4a0ef16SKarl Rupp PetscErrorCode MatAssemblyEnd_SeqAIJViennaCL(Mat A,MatAssemblyType mode) 253e4a0ef16SKarl Rupp { 254e4a0ef16SKarl Rupp PetscErrorCode ierr; 255e4a0ef16SKarl Rupp 256e4a0ef16SKarl Rupp PetscFunctionBegin; 257e4a0ef16SKarl Rupp ierr = MatAssemblyEnd_SeqAIJ(A,mode);CHKERRQ(ierr); 258489de41dSStefano Zampini if (mode == MAT_FLUSH_ASSEMBLY) PetscFunctionReturn(0); 259e7e92044SBarry Smith if (!A->pinnedtocpu) { 260e4a0ef16SKarl Rupp ierr = MatViennaCLCopyToGPU(A);CHKERRQ(ierr); 261e7e92044SBarry Smith } 262e4a0ef16SKarl Rupp PetscFunctionReturn(0); 263e4a0ef16SKarl Rupp } 264e4a0ef16SKarl Rupp 265e4a0ef16SKarl Rupp /* --------------------------------------------------------------------------------*/ 266e4a0ef16SKarl Rupp /*@ 267e4a0ef16SKarl Rupp MatCreateSeqAIJViennaCL - Creates a sparse matrix in AIJ (compressed row) format 26819fddfadSKarl Rupp (the default parallel PETSc format). This matrix will ultimately be pushed down 269e4a0ef16SKarl Rupp to GPUs and use the ViennaCL library for calculations. For good matrix 270e4a0ef16SKarl Rupp assembly performance the user should preallocate the matrix storage by setting 271e4a0ef16SKarl Rupp the parameter nz (or the array nnz). By setting these parameters accurately, 272e4a0ef16SKarl Rupp performance during matrix assembly can be increased substantially. 273e4a0ef16SKarl Rupp 274e4a0ef16SKarl Rupp 275d083f849SBarry Smith Collective 276e4a0ef16SKarl Rupp 277e4a0ef16SKarl Rupp Input Parameters: 278e4a0ef16SKarl Rupp + comm - MPI communicator, set to PETSC_COMM_SELF 279e4a0ef16SKarl Rupp . m - number of rows 280e4a0ef16SKarl Rupp . n - number of columns 281e4a0ef16SKarl Rupp . nz - number of nonzeros per row (same for all rows) 282e4a0ef16SKarl Rupp - nnz - array containing the number of nonzeros in the various rows 283e4a0ef16SKarl Rupp (possibly different for each row) or NULL 284e4a0ef16SKarl Rupp 285e4a0ef16SKarl Rupp Output Parameter: 286e4a0ef16SKarl Rupp . A - the matrix 287e4a0ef16SKarl Rupp 288e4a0ef16SKarl Rupp It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 289e4a0ef16SKarl Rupp MatXXXXSetPreallocation() paradigm instead of this routine directly. 290e4a0ef16SKarl Rupp [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 291e4a0ef16SKarl Rupp 292e4a0ef16SKarl Rupp Notes: 293e4a0ef16SKarl Rupp If nnz is given then nz is ignored 294e4a0ef16SKarl Rupp 295e4a0ef16SKarl Rupp The AIJ format (also called the Yale sparse matrix format or 296e4a0ef16SKarl Rupp compressed row storage), is fully compatible with standard Fortran 77 297e4a0ef16SKarl Rupp storage. That is, the stored row and column indices can begin at 298e4a0ef16SKarl Rupp either one (as in Fortran) or zero. See the users' manual for details. 299e4a0ef16SKarl Rupp 300e4a0ef16SKarl Rupp Specify the preallocated storage with either nz or nnz (not both). 301e4a0ef16SKarl Rupp Set nz=PETSC_DEFAULT and nnz=NULL for PETSc to control dynamic memory 302e4a0ef16SKarl Rupp allocation. For large problems you MUST preallocate memory or you 303e4a0ef16SKarl Rupp will get TERRIBLE performance, see the users' manual chapter on matrices. 304e4a0ef16SKarl Rupp 305e4a0ef16SKarl Rupp Level: intermediate 306e4a0ef16SKarl Rupp 307e9e886b6SKarl Rupp .seealso: MatCreate(), MatCreateAIJ(), MatCreateAIJCUSPARSE(), MatSetValues(), MatSeqAIJSetColumnIndices(), MatCreateSeqAIJWithArrays(), MatCreateAIJ() 308e4a0ef16SKarl Rupp 309e4a0ef16SKarl Rupp @*/ 310e4a0ef16SKarl Rupp PetscErrorCode MatCreateSeqAIJViennaCL(MPI_Comm comm,PetscInt m,PetscInt n,PetscInt nz,const PetscInt nnz[],Mat *A) 311e4a0ef16SKarl Rupp { 312e4a0ef16SKarl Rupp PetscErrorCode ierr; 313e4a0ef16SKarl Rupp 314e4a0ef16SKarl Rupp PetscFunctionBegin; 315e4a0ef16SKarl Rupp ierr = MatCreate(comm,A);CHKERRQ(ierr); 316e4a0ef16SKarl Rupp ierr = MatSetSizes(*A,m,n,m,n);CHKERRQ(ierr); 317e4a0ef16SKarl Rupp ierr = MatSetType(*A,MATSEQAIJVIENNACL);CHKERRQ(ierr); 318e4a0ef16SKarl Rupp ierr = MatSeqAIJSetPreallocation_SeqAIJ(*A,nz,(PetscInt*)nnz);CHKERRQ(ierr); 319e4a0ef16SKarl Rupp PetscFunctionReturn(0); 320e4a0ef16SKarl Rupp } 321e4a0ef16SKarl Rupp 322e4a0ef16SKarl Rupp 323e4a0ef16SKarl Rupp PetscErrorCode MatDestroy_SeqAIJViennaCL(Mat A) 324e4a0ef16SKarl Rupp { 325e4a0ef16SKarl Rupp PetscErrorCode ierr; 326e4a0ef16SKarl Rupp Mat_SeqAIJViennaCL *viennaclcontainer = (Mat_SeqAIJViennaCL*)A->spptr; 327e4a0ef16SKarl Rupp 328e4a0ef16SKarl Rupp PetscFunctionBegin; 329e4a0ef16SKarl Rupp try { 3306447cd05SKarl Rupp if (viennaclcontainer) { 3316447cd05SKarl Rupp delete viennaclcontainer->tempvec; 3326447cd05SKarl Rupp delete viennaclcontainer->mat; 3336447cd05SKarl Rupp delete viennaclcontainer->compressed_mat; 334e4a0ef16SKarl Rupp delete viennaclcontainer; 3356447cd05SKarl Rupp } 336b8ced49eSKarl Rupp A->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 3374076e183SKarl Rupp } catch(std::exception const & ex) { 3384076e183SKarl Rupp SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"ViennaCL error: %s", ex.what()); 339e4a0ef16SKarl Rupp } 3408713a8baSPatrick Sanan 3418713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",NULL);CHKERRQ(ierr); 3428713a8baSPatrick Sanan 343e4a0ef16SKarl Rupp /* this next line is because MatDestroy tries to PetscFree spptr if it is not zero, and PetscFree only works if the memory was allocated with PetscNew or PetscMalloc, which don't call the constructor */ 344e4a0ef16SKarl Rupp A->spptr = 0; 345e4a0ef16SKarl Rupp ierr = MatDestroy_SeqAIJ(A);CHKERRQ(ierr); 346e4a0ef16SKarl Rupp PetscFunctionReturn(0); 347e4a0ef16SKarl Rupp } 348e4a0ef16SKarl Rupp 349e4a0ef16SKarl Rupp 350e4a0ef16SKarl Rupp PETSC_EXTERN PetscErrorCode MatCreate_SeqAIJViennaCL(Mat B) 351e4a0ef16SKarl Rupp { 352e4a0ef16SKarl Rupp PetscErrorCode ierr; 353e4a0ef16SKarl Rupp 354e4a0ef16SKarl Rupp PetscFunctionBegin; 355e4a0ef16SKarl Rupp ierr = MatCreate_SeqAIJ(B);CHKERRQ(ierr); 3568713a8baSPatrick Sanan ierr = MatConvert_SeqAIJ_SeqAIJViennaCL(B,MATSEQAIJVIENNACL,MAT_INPLACE_MATRIX,&B); 3578713a8baSPatrick Sanan PetscFunctionReturn(0); 3588713a8baSPatrick Sanan } 3598713a8baSPatrick Sanan 360e7e92044SBarry Smith static PetscErrorCode MatPinToCPU_SeqAIJViennaCL(Mat,PetscBool); 361c3cca76eSKarl Rupp static PetscErrorCode MatDuplicate_SeqAIJViennaCL(Mat A,MatDuplicateOption cpvalues,Mat *B) 362c3cca76eSKarl Rupp { 363c3cca76eSKarl Rupp PetscErrorCode ierr; 364c3cca76eSKarl Rupp Mat C; 365c3cca76eSKarl Rupp 366c3cca76eSKarl Rupp PetscFunctionBegin; 367c3cca76eSKarl Rupp ierr = MatDuplicate_SeqAIJ(A,cpvalues,B);CHKERRQ(ierr); 368c3cca76eSKarl Rupp C = *B; 369c3cca76eSKarl Rupp 370e7e92044SBarry Smith ierr = MatPinToCPU_SeqAIJViennaCL(A,PETSC_FALSE);CHKERRQ(ierr); 371e7e92044SBarry Smith C->ops->pintocpu = MatPinToCPU_SeqAIJViennaCL; 372c3cca76eSKarl Rupp 373c3cca76eSKarl Rupp C->spptr = new Mat_SeqAIJViennaCL(); 374c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->tempvec = NULL; 375c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->mat = NULL; 376c3cca76eSKarl Rupp ((Mat_SeqAIJViennaCL*)C->spptr)->compressed_mat = NULL; 377c3cca76eSKarl Rupp 378c3cca76eSKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)C,MATSEQAIJVIENNACL);CHKERRQ(ierr); 379c3cca76eSKarl Rupp 380b8ced49eSKarl Rupp C->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 381c3cca76eSKarl Rupp 382c3cca76eSKarl Rupp /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 383c3cca76eSKarl Rupp if (C->assembled) { 384c3cca76eSKarl Rupp ierr = MatViennaCLCopyToGPU(C);CHKERRQ(ierr); 385c3cca76eSKarl Rupp } 386c3cca76eSKarl Rupp 387c3cca76eSKarl Rupp PetscFunctionReturn(0); 388c3cca76eSKarl Rupp } 389c3cca76eSKarl Rupp 390*f38c1e66SStefano Zampini static PetscErrorCode MatSeqAIJGetArray_SeqAIJViennaCL(Mat A,PetscScalar *array[]) 391*f38c1e66SStefano Zampini { 392*f38c1e66SStefano Zampini Mat_SeqAIJ *a = (Mat_SeqAIJ*)A->data; 393*f38c1e66SStefano Zampini PetscErrorCode ierr; 394*f38c1e66SStefano Zampini 395*f38c1e66SStefano Zampini PetscFunctionBegin; 396*f38c1e66SStefano Zampini ierr = MatViennaCLCopyFromGPU(A,(const ViennaCLAIJMatrix *)NULL);CHKERRQ(ierr); 397*f38c1e66SStefano Zampini *array = a->a; 398*f38c1e66SStefano Zampini A->valid_GPU_matrix = PETSC_OFFLOAD_CPU; 399*f38c1e66SStefano Zampini PetscFunctionReturn(0); 400*f38c1e66SStefano Zampini } 401*f38c1e66SStefano Zampini 402*f38c1e66SStefano Zampini 403*f38c1e66SStefano Zampini static PetscErrorCode MatSeqAIJRestoreArray_SeqAIJViennaCL(Mat A,PetscScalar *array[]) 404*f38c1e66SStefano Zampini { 405*f38c1e66SStefano Zampini PetscFunctionBegin; 406*f38c1e66SStefano Zampini *array = NULL; 407*f38c1e66SStefano Zampini PetscFunctionReturn(0); 408*f38c1e66SStefano Zampini } 409*f38c1e66SStefano Zampini 410e7e92044SBarry Smith static PetscErrorCode MatPinToCPU_SeqAIJViennaCL(Mat A,PetscBool flg) 411e7e92044SBarry Smith { 412*f38c1e66SStefano Zampini PetscErrorCode ierr; 413*f38c1e66SStefano Zampini 414e7e92044SBarry Smith PetscFunctionBegin; 415e7e92044SBarry Smith A->pinnedtocpu = flg; 416e7e92044SBarry Smith if (flg) { 417*f38c1e66SStefano Zampini /* make sure we have an up-to-date copy on the CPU */ 418*f38c1e66SStefano Zampini ierr = MatViennaCLCopyFromGPU(A,(const ViennaCLAIJMatrix *)NULL);CHKERRQ(ierr); 419*f38c1e66SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqAIJGetArray_C",MatSeqAIJGetArray_SeqAIJ);CHKERRQ(ierr); 420*f38c1e66SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqAIJRestoreArray_C",MatSeqAIJRestoreArray_SeqAIJ);CHKERRQ(ierr); 421*f38c1e66SStefano Zampini 422e7e92044SBarry Smith A->ops->mult = MatMult_SeqAIJ; 423e7e92044SBarry Smith A->ops->multadd = MatMultAdd_SeqAIJ; 424e7e92044SBarry Smith A->ops->assemblyend = MatAssemblyEnd_SeqAIJ; 425e7e92044SBarry Smith A->ops->duplicate = MatDuplicate_SeqAIJ; 426e7e92044SBarry Smith } else { 427*f38c1e66SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqAIJGetArray_C",MatSeqAIJGetArray_SeqAIJViennaCL);CHKERRQ(ierr); 428*f38c1e66SStefano Zampini ierr = PetscObjectComposeFunction((PetscObject)A,"MatSeqAIJRestoreArray_C",MatSeqAIJRestoreArray_SeqAIJViennaCL);CHKERRQ(ierr); 429*f38c1e66SStefano Zampini 430e7e92044SBarry Smith A->ops->mult = MatMult_SeqAIJViennaCL; 431e7e92044SBarry Smith A->ops->multadd = MatMultAdd_SeqAIJViennaCL; 432e7e92044SBarry Smith A->ops->assemblyend = MatAssemblyEnd_SeqAIJViennaCL; 433e7e92044SBarry Smith A->ops->destroy = MatDestroy_SeqAIJViennaCL; 434e7e92044SBarry Smith A->ops->duplicate = MatDuplicate_SeqAIJViennaCL; 435e7e92044SBarry Smith } 436e7e92044SBarry Smith PetscFunctionReturn(0); 437e7e92044SBarry Smith } 438e7e92044SBarry Smith 4398713a8baSPatrick Sanan PETSC_INTERN PetscErrorCode MatConvert_SeqAIJ_SeqAIJViennaCL(Mat A,MatType type,MatReuse reuse,Mat *newmat) 4408713a8baSPatrick Sanan { 4418713a8baSPatrick Sanan PetscErrorCode ierr; 4428713a8baSPatrick Sanan Mat B; 4438713a8baSPatrick Sanan Mat_SeqAIJ *aij; 4448713a8baSPatrick Sanan 4458713a8baSPatrick Sanan PetscFunctionBegin; 4468713a8baSPatrick Sanan 4478713a8baSPatrick Sanan if (reuse == MAT_REUSE_MATRIX) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_SUP,"MAT_REUSE_MATRIX is not supported. Consider using MAT_INPLACE_MATRIX instead"); 4488713a8baSPatrick Sanan 4498713a8baSPatrick Sanan if (reuse == MAT_INITIAL_MATRIX) { 4508713a8baSPatrick Sanan ierr = MatDuplicate(A,MAT_COPY_VALUES,newmat);CHKERRQ(ierr); 4518713a8baSPatrick Sanan } 4528713a8baSPatrick Sanan 4538713a8baSPatrick Sanan B = *newmat; 4548713a8baSPatrick Sanan 455e4a0ef16SKarl Rupp aij = (Mat_SeqAIJ*)B->data; 456e4a0ef16SKarl Rupp aij->inode.use = PETSC_FALSE; 4578713a8baSPatrick Sanan 458e4a0ef16SKarl Rupp B->spptr = new Mat_SeqAIJViennaCL(); 459e4a0ef16SKarl Rupp 460a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->tempvec = NULL; 461a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->mat = NULL; 462a3430c56SKarl Rupp ((Mat_SeqAIJViennaCL*)B->spptr)->compressed_mat = NULL; 463e4a0ef16SKarl Rupp 464e7e92044SBarry Smith ierr = MatPinToCPU_SeqAIJViennaCL(A,PETSC_FALSE);CHKERRQ(ierr); 465e7e92044SBarry Smith A->ops->pintocpu = MatPinToCPU_SeqAIJViennaCL; 466e4a0ef16SKarl Rupp 467e4a0ef16SKarl Rupp ierr = PetscObjectChangeTypeName((PetscObject)B,MATSEQAIJVIENNACL);CHKERRQ(ierr); 46834136279SStefano Zampini ierr = PetscFree(B->defaultvectype);CHKERRQ(ierr); 46934136279SStefano Zampini ierr = PetscStrallocpy(VECVIENNACL,&B->defaultvectype);CHKERRQ(ierr); 470e4a0ef16SKarl Rupp 4718713a8baSPatrick Sanan ierr = PetscObjectComposeFunction((PetscObject)A,"MatConvert_seqaij_seqaijviennacl_C",MatConvert_SeqAIJ_SeqAIJViennaCL);CHKERRQ(ierr); 4728713a8baSPatrick Sanan 473b8ced49eSKarl Rupp B->valid_GPU_matrix = PETSC_OFFLOAD_UNALLOCATED; 4748713a8baSPatrick Sanan 4758713a8baSPatrick Sanan /* If the source matrix is already assembled, copy the destination matrix to the GPU */ 4768713a8baSPatrick Sanan if (B->assembled) { 4778713a8baSPatrick Sanan ierr = MatViennaCLCopyToGPU(B);CHKERRQ(ierr); 4788713a8baSPatrick Sanan } 4798713a8baSPatrick Sanan 480e4a0ef16SKarl Rupp PetscFunctionReturn(0); 481e4a0ef16SKarl Rupp } 482e4a0ef16SKarl Rupp 483e4a0ef16SKarl Rupp 4843ca39a21SBarry Smith /*MC 485e4a0ef16SKarl Rupp MATSEQAIJVIENNACL - MATAIJVIENNACL = "aijviennacl" = "seqaijviennacl" - A matrix type to be used for sparse matrices. 486e4a0ef16SKarl Rupp 487e4a0ef16SKarl Rupp A matrix type type whose data resides on GPUs. These matrices are in CSR format by 488e4a0ef16SKarl Rupp default. All matrix calculations are performed using the ViennaCL library. 489e4a0ef16SKarl Rupp 490e4a0ef16SKarl Rupp Options Database Keys: 491e4a0ef16SKarl Rupp + -mat_type aijviennacl - sets the matrix type to "seqaijviennacl" during a call to MatSetFromOptions() 492e4a0ef16SKarl Rupp . -mat_viennacl_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 493e4a0ef16SKarl Rupp - -mat_viennacl_mult_storage_format csr - sets the storage format of matrices for MatMult during a call to MatSetFromOptions(). 494e4a0ef16SKarl Rupp 495e4a0ef16SKarl Rupp Level: beginner 496e4a0ef16SKarl Rupp 497e4a0ef16SKarl Rupp .seealso: MatCreateSeqAIJViennaCL(), MATAIJVIENNACL, MatCreateAIJViennaCL() 498e4a0ef16SKarl Rupp M*/ 499e4a0ef16SKarl Rupp 50072367587SKarl Rupp 5013ca39a21SBarry Smith PETSC_EXTERN PetscErrorCode MatSolverTypeRegister_ViennaCL(void) 50272367587SKarl Rupp { 50372367587SKarl Rupp PetscErrorCode ierr; 50472367587SKarl Rupp 50572367587SKarl Rupp PetscFunctionBegin; 5063ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_LU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 5073ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_CHOLESKY,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 5083ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ILU,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 5093ca39a21SBarry Smith ierr = MatSolverTypeRegister(MATSOLVERPETSC, MATSEQAIJVIENNACL, MAT_FACTOR_ICC,MatGetFactor_seqaij_petsc);CHKERRQ(ierr); 51072367587SKarl Rupp PetscFunctionReturn(0); 51172367587SKarl Rupp } 512