1be1d678aSKris Buschelman #define PETSCMAT_DLL 214b396bbSKris Buschelman 35a46d3faSBarry Smith /* -------------------------------------------------------------------- 45a46d3faSBarry Smith 55a46d3faSBarry Smith This file implements a subclass of the SeqAIJ matrix class that uses 65a46d3faSBarry Smith the SuperLU 3.0 sparse solver. You can use this as a starting point for 75a46d3faSBarry Smith implementing your own subclass of a PETSc matrix class. 85a46d3faSBarry Smith 95a46d3faSBarry Smith This demonstrates a way to make an implementation inheritence of a PETSc 105a46d3faSBarry Smith matrix type. This means constructing a new matrix type (SuperLU) by changing some 115a46d3faSBarry Smith of the methods of the previous type (SeqAIJ), adding additional data, and possibly 125a46d3faSBarry Smith additional method. (See any book on object oriented programming). 1314b396bbSKris Buschelman */ 1414b396bbSKris Buschelman 155a46d3faSBarry Smith /* 165a46d3faSBarry Smith Defines the data structure for the base matrix type (SeqAIJ) 175a46d3faSBarry Smith */ 187c4f633dSBarry Smith #include "../src/mat/impls/aij/seq/aij.h" 1914b396bbSKris Buschelman 205a46d3faSBarry Smith /* 215a46d3faSBarry Smith SuperLU include files 225a46d3faSBarry Smith */ 2314b396bbSKris Buschelman EXTERN_C_BEGIN 2414b396bbSKris Buschelman #if defined(PETSC_USE_COMPLEX) 2566f57492SHong Zhang #include "slu_zdefs.h" 2614b396bbSKris Buschelman #else 2766f57492SHong Zhang #include "slu_ddefs.h" 2814b396bbSKris Buschelman #endif 2966f57492SHong Zhang #include "slu_util.h" 3014b396bbSKris Buschelman EXTERN_C_END 3114b396bbSKris Buschelman 325a46d3faSBarry Smith /* 335a46d3faSBarry Smith This is the data we are "ADDING" to the SeqAIJ matrix type to get the SuperLU matrix type 345a46d3faSBarry Smith */ 3514b396bbSKris Buschelman typedef struct { 3675af56d4SHong Zhang SuperMatrix A,L,U,B,X; 3775af56d4SHong Zhang superlu_options_t options; 38da7a1d00SHong Zhang PetscInt *perm_c; /* column permutation vector */ 39da7a1d00SHong Zhang PetscInt *perm_r; /* row permutations from partial pivoting */ 40da7a1d00SHong Zhang PetscInt *etree; 41da7a1d00SHong Zhang PetscReal *R, *C; 4275af56d4SHong Zhang char equed[1]; 43da7a1d00SHong Zhang PetscInt lwork; 4475af56d4SHong Zhang void *work; 45da7a1d00SHong Zhang PetscReal rpg, rcond; 4675af56d4SHong Zhang mem_usage_t mem_usage; 4775af56d4SHong Zhang MatStructure flg; 4814b396bbSKris Buschelman 4914b396bbSKris Buschelman /* Flag to clean up (non-global) SuperLU objects during Destroy */ 5014b396bbSKris Buschelman PetscTruth CleanUpSuperLU; 51f0c56d0fSKris Buschelman } Mat_SuperLU; 5214b396bbSKris Buschelman 53e0e586b9SHong Zhang extern PetscErrorCode MatFactorInfo_SuperLU(Mat,PetscViewer); 540481f469SBarry Smith extern PetscErrorCode MatLUFactorNumeric_SuperLU(Mat,Mat,const MatFactorInfo *); 55e0e586b9SHong Zhang extern PetscErrorCode MatDestroy_SuperLU(Mat); 56e0e586b9SHong Zhang extern PetscErrorCode MatView_SuperLU(Mat,PetscViewer); 57e0e586b9SHong Zhang extern PetscErrorCode MatAssemblyEnd_SuperLU(Mat,MatAssemblyType); 58e0e586b9SHong Zhang extern PetscErrorCode MatSolve_SuperLU(Mat,Vec,Vec); 59e0e586b9SHong Zhang extern PetscErrorCode MatSolveTranspose_SuperLU(Mat,Vec,Vec); 600481f469SBarry Smith extern PetscErrorCode MatLUFactorSymbolic_SuperLU(Mat,Mat,IS,IS,const MatFactorInfo*); 61e0e586b9SHong Zhang extern PetscErrorCode MatDuplicate_SuperLU(Mat, MatDuplicateOption, Mat *); 62e0e586b9SHong Zhang 635a46d3faSBarry Smith /* 645a46d3faSBarry Smith Utility function 655a46d3faSBarry Smith */ 665a46d3faSBarry Smith #undef __FUNCT__ 675a46d3faSBarry Smith #define __FUNCT__ "MatFactorInfo_SuperLU" 685a46d3faSBarry Smith PetscErrorCode MatFactorInfo_SuperLU(Mat A,PetscViewer viewer) 695a46d3faSBarry Smith { 705a46d3faSBarry Smith Mat_SuperLU *lu= (Mat_SuperLU*)A->spptr; 715a46d3faSBarry Smith PetscErrorCode ierr; 725a46d3faSBarry Smith superlu_options_t options; 735a46d3faSBarry Smith 745a46d3faSBarry Smith PetscFunctionBegin; 755a46d3faSBarry Smith /* check if matrix is superlu_dist type */ 765a46d3faSBarry Smith if (A->ops->solve != MatSolve_SuperLU) PetscFunctionReturn(0); 775a46d3faSBarry Smith 785a46d3faSBarry Smith options = lu->options; 795a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"SuperLU run parameters:\n");CHKERRQ(ierr); 805a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," Equil: %s\n",(options.Equil != NO) ? "YES": "NO");CHKERRQ(ierr); 815a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," ColPerm: %D\n",options.ColPerm);CHKERRQ(ierr); 825a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," IterRefine: %D\n",options.IterRefine);CHKERRQ(ierr); 835a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," SymmetricMode: %s\n",(options.SymmetricMode != NO) ? "YES": "NO");CHKERRQ(ierr); 845a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," DiagPivotThresh: %g\n",options.DiagPivotThresh);CHKERRQ(ierr); 855a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," PivotGrowth: %s\n",(options.PivotGrowth != NO) ? "YES": "NO");CHKERRQ(ierr); 865a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," ConditionNumber: %s\n",(options.ConditionNumber != NO) ? "YES": "NO");CHKERRQ(ierr); 875a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," RowPerm: %D\n",options.RowPerm);CHKERRQ(ierr); 885a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," ReplaceTinyPivot: %s\n",(options.ReplaceTinyPivot != NO) ? "YES": "NO");CHKERRQ(ierr); 895a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," PrintStat: %s\n",(options.PrintStat != NO) ? "YES": "NO");CHKERRQ(ierr); 905a46d3faSBarry Smith ierr = PetscViewerASCIIPrintf(viewer," lwork: %D\n",lu->lwork);CHKERRQ(ierr); 915a46d3faSBarry Smith PetscFunctionReturn(0); 925a46d3faSBarry Smith } 935a46d3faSBarry Smith 945a46d3faSBarry Smith /* 955a46d3faSBarry Smith These are the methods provided to REPLACE the corresponding methods of the 965a46d3faSBarry Smith SeqAIJ matrix class. Other methods of SeqAIJ are not replaced 975a46d3faSBarry Smith */ 985a46d3faSBarry Smith #undef __FUNCT__ 995a46d3faSBarry Smith #define __FUNCT__ "MatLUFactorNumeric_SuperLU" 1000481f469SBarry Smith PetscErrorCode MatLUFactorNumeric_SuperLU(Mat F,Mat A,const MatFactorInfo *info) 1015a46d3faSBarry Smith { 1025a46d3faSBarry Smith Mat_SeqAIJ *aa = (Mat_SeqAIJ*)(A)->data; 103719d5645SBarry Smith Mat_SuperLU *lu = (Mat_SuperLU*)(F)->spptr; 1045a46d3faSBarry Smith PetscErrorCode ierr; 1055a46d3faSBarry Smith PetscInt sinfo; 1065a46d3faSBarry Smith SuperLUStat_t stat; 1075a46d3faSBarry Smith PetscReal ferr, berr; 1085a46d3faSBarry Smith NCformat *Ustore; 1095a46d3faSBarry Smith SCformat *Lstore; 1105a46d3faSBarry Smith 1115a46d3faSBarry Smith PetscFunctionBegin; 1125a46d3faSBarry Smith if (lu->flg == SAME_NONZERO_PATTERN){ /* successing numerical factorization */ 1135a46d3faSBarry Smith lu->options.Fact = SamePattern; 1145a46d3faSBarry Smith /* Ref: ~SuperLU_3.0/EXAMPLE/dlinsolx2.c */ 1155a46d3faSBarry Smith Destroy_SuperMatrix_Store(&lu->A); 1165a46d3faSBarry Smith if ( lu->lwork >= 0 ) { 1175a46d3faSBarry Smith Destroy_SuperNode_Matrix(&lu->L); 1185a46d3faSBarry Smith Destroy_CompCol_Matrix(&lu->U); 1195a46d3faSBarry Smith lu->options.Fact = SamePattern; 1205a46d3faSBarry Smith } 1215a46d3faSBarry Smith } 1225a46d3faSBarry Smith 1235a46d3faSBarry Smith /* Create the SuperMatrix for lu->A=A^T: 1245a46d3faSBarry Smith Since SuperLU likes column-oriented matrices,we pass it the transpose, 1255a46d3faSBarry Smith and then solve A^T X = B in MatSolve(). */ 1265a46d3faSBarry Smith #if defined(PETSC_USE_COMPLEX) 127d0f46423SBarry Smith zCreate_CompCol_Matrix(&lu->A,A->cmap->n,A->rmap->n,aa->nz,(doublecomplex*)aa->a,aa->j,aa->i, 1285a46d3faSBarry Smith SLU_NC,SLU_Z,SLU_GE); 1295a46d3faSBarry Smith #else 130d0f46423SBarry Smith dCreate_CompCol_Matrix(&lu->A,A->cmap->n,A->rmap->n,aa->nz,aa->a,aa->j,aa->i, 1315a46d3faSBarry Smith SLU_NC,SLU_D,SLU_GE); 1325a46d3faSBarry Smith #endif 1335a46d3faSBarry Smith 1345a46d3faSBarry Smith /* Initialize the statistics variables. */ 1355a46d3faSBarry Smith StatInit(&stat); 1365a46d3faSBarry Smith 1375a46d3faSBarry Smith /* Numerical factorization */ 1385a46d3faSBarry Smith lu->B.ncol = 0; /* Indicate not to solve the system */ 1395a46d3faSBarry Smith #if defined(PETSC_USE_COMPLEX) 1405a46d3faSBarry Smith zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, 1415a46d3faSBarry Smith &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, 1425a46d3faSBarry Smith &lu->mem_usage, &stat, &sinfo); 1435a46d3faSBarry Smith #else 1445a46d3faSBarry Smith dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, 1455a46d3faSBarry Smith &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, 1465a46d3faSBarry Smith &lu->mem_usage, &stat, &sinfo); 1475a46d3faSBarry Smith #endif 1485a46d3faSBarry Smith if ( !sinfo || sinfo == lu->A.ncol+1 ) { 1495a46d3faSBarry Smith if ( lu->options.PivotGrowth ) 1505a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," Recip. pivot growth = %e\n", lu->rpg); 1515a46d3faSBarry Smith if ( lu->options.ConditionNumber ) 1525a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," Recip. condition number = %e\n", lu->rcond); 1535a46d3faSBarry Smith } else if ( sinfo > 0 ){ 1545a46d3faSBarry Smith if ( lu->lwork == -1 ) { 1555a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," ** Estimated memory: %D bytes\n", sinfo - lu->A.ncol); 1565a46d3faSBarry Smith } else { 1575a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," Warning: gssvx() returns info %D\n",sinfo); 1585a46d3faSBarry Smith } 1595a46d3faSBarry Smith } else { /* sinfo < 0 */ 1605a46d3faSBarry Smith SETERRQ2(PETSC_ERR_LIB, "info = %D, the %D-th argument in gssvx() had an illegal value", sinfo,-sinfo); 1615a46d3faSBarry Smith } 1625a46d3faSBarry Smith 1635a46d3faSBarry Smith if ( lu->options.PrintStat ) { 1645a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF,"MatLUFactorNumeric_SuperLU():\n"); 1655a46d3faSBarry Smith StatPrint(&stat); 1665a46d3faSBarry Smith Lstore = (SCformat *) lu->L.Store; 1675a46d3faSBarry Smith Ustore = (NCformat *) lu->U.Store; 1685a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," No of nonzeros in factor L = %D\n", Lstore->nnz); 1695a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," No of nonzeros in factor U = %D\n", Ustore->nnz); 1705a46d3faSBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," No of nonzeros in L+U = %D\n", Lstore->nnz + Ustore->nnz - lu->A.ncol); 171*6da386baSHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF," L\\U MB %.3f\ttotal MB needed %.3f\n", 172*6da386baSHong Zhang lu->mem_usage.for_lu/1e6, lu->mem_usage.total_needed/1e6); 1735a46d3faSBarry Smith } 1745a46d3faSBarry Smith StatFree(&stat); 1755a46d3faSBarry Smith 1765a46d3faSBarry Smith lu->flg = SAME_NONZERO_PATTERN; 177719d5645SBarry Smith (F)->ops->solve = MatSolve_SuperLU; 178719d5645SBarry Smith (F)->ops->solvetranspose = MatSolveTranspose_SuperLU; 1795a46d3faSBarry Smith PetscFunctionReturn(0); 1805a46d3faSBarry Smith } 1815a46d3faSBarry Smith 18214b396bbSKris Buschelman #undef __FUNCT__ 183f0c56d0fSKris Buschelman #define __FUNCT__ "MatDestroy_SuperLU" 184dfbe8321SBarry Smith PetscErrorCode MatDestroy_SuperLU(Mat A) 18514b396bbSKris Buschelman { 186dfbe8321SBarry Smith PetscErrorCode ierr; 187f0c56d0fSKris Buschelman Mat_SuperLU *lu=(Mat_SuperLU*)A->spptr; 18814b396bbSKris Buschelman 18914b396bbSKris Buschelman PetscFunctionBegin; 19075af56d4SHong Zhang if (lu->CleanUpSuperLU) { /* Free the SuperLU datastructures */ 19175af56d4SHong Zhang Destroy_SuperMatrix_Store(&lu->A); 19275af56d4SHong Zhang Destroy_SuperMatrix_Store(&lu->B); 19375af56d4SHong Zhang Destroy_SuperMatrix_Store(&lu->X); 1949ce50919SHong Zhang 1959ce50919SHong Zhang ierr = PetscFree(lu->etree);CHKERRQ(ierr); 1969ce50919SHong Zhang ierr = PetscFree(lu->perm_r);CHKERRQ(ierr); 1979ce50919SHong Zhang ierr = PetscFree(lu->perm_c);CHKERRQ(ierr); 1989ce50919SHong Zhang ierr = PetscFree(lu->R);CHKERRQ(ierr); 1999ce50919SHong Zhang ierr = PetscFree(lu->C);CHKERRQ(ierr); 20075af56d4SHong Zhang if ( lu->lwork >= 0 ) { 201fb3e25aaSKris Buschelman Destroy_SuperNode_Matrix(&lu->L); 202fb3e25aaSKris Buschelman Destroy_CompCol_Matrix(&lu->U); 20375af56d4SHong Zhang } 204fb3e25aaSKris Buschelman } 205b24902e0SBarry Smith ierr = MatDestroy_SeqAIJ(A);CHKERRQ(ierr); 20614b396bbSKris Buschelman PetscFunctionReturn(0); 20714b396bbSKris Buschelman } 20814b396bbSKris Buschelman 20914b396bbSKris Buschelman #undef __FUNCT__ 210f0c56d0fSKris Buschelman #define __FUNCT__ "MatView_SuperLU" 211dfbe8321SBarry Smith PetscErrorCode MatView_SuperLU(Mat A,PetscViewer viewer) 21214b396bbSKris Buschelman { 213dfbe8321SBarry Smith PetscErrorCode ierr; 21432077d6dSBarry Smith PetscTruth iascii; 21514b396bbSKris Buschelman PetscViewerFormat format; 21614b396bbSKris Buschelman 21714b396bbSKris Buschelman PetscFunctionBegin; 218b24902e0SBarry Smith ierr = MatView_SeqAIJ(A,viewer);CHKERRQ(ierr); 21914b396bbSKris Buschelman 22032077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 22132077d6dSBarry Smith if (iascii) { 22214b396bbSKris Buschelman ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 2232f59403fSHong Zhang if (format == PETSC_VIEWER_ASCII_INFO) { 224f0c56d0fSKris Buschelman ierr = MatFactorInfo_SuperLU(A,viewer);CHKERRQ(ierr); 22514b396bbSKris Buschelman } 22614b396bbSKris Buschelman } 22714b396bbSKris Buschelman PetscFunctionReturn(0); 22814b396bbSKris Buschelman } 22914b396bbSKris Buschelman 23014b396bbSKris Buschelman 23114b396bbSKris Buschelman #undef __FUNCT__ 232c29e884eSHong Zhang #define __FUNCT__ "MatSolve_SuperLU_Private" 233c29e884eSHong Zhang PetscErrorCode MatSolve_SuperLU_Private(Mat A,Vec b,Vec x) 23414b396bbSKris Buschelman { 235f0c56d0fSKris Buschelman Mat_SuperLU *lu = (Mat_SuperLU*)A->spptr; 23675af56d4SHong Zhang PetscScalar *barray,*xarray; 237dfbe8321SBarry Smith PetscErrorCode ierr; 238da7a1d00SHong Zhang PetscInt info,i; 23975af56d4SHong Zhang SuperLUStat_t stat; 240da7a1d00SHong Zhang PetscReal ferr,berr; 24114b396bbSKris Buschelman 24214b396bbSKris Buschelman PetscFunctionBegin; 243937a6b0eSHong Zhang if ( lu->lwork == -1 ) { 244937a6b0eSHong Zhang PetscFunctionReturn(0); 245937a6b0eSHong Zhang } 24675af56d4SHong Zhang lu->B.ncol = 1; /* Set the number of right-hand side */ 24775af56d4SHong Zhang ierr = VecGetArray(b,&barray);CHKERRQ(ierr); 24875af56d4SHong Zhang ierr = VecGetArray(x,&xarray);CHKERRQ(ierr); 2495fe6150dSHong Zhang 2505fe6150dSHong Zhang #if defined(PETSC_USE_COMPLEX) 2515fe6150dSHong Zhang ((DNformat*)lu->B.Store)->nzval = (doublecomplex*)barray; 2525fe6150dSHong Zhang ((DNformat*)lu->X.Store)->nzval = (doublecomplex*)xarray; 2535fe6150dSHong Zhang #else 2545fe6150dSHong Zhang ((DNformat*)lu->B.Store)->nzval = barray; 25575af56d4SHong Zhang ((DNformat*)lu->X.Store)->nzval = xarray; 2565fe6150dSHong Zhang #endif 25775af56d4SHong Zhang 25875af56d4SHong Zhang /* Initialize the statistics variables. */ 25975af56d4SHong Zhang StatInit(&stat); 26075af56d4SHong Zhang 26175af56d4SHong Zhang lu->options.Fact = FACTORED; /* Indicate the factored form of A is supplied. */ 2628914a3f7SHong Zhang #if defined(PETSC_USE_COMPLEX) 2638914a3f7SHong Zhang zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, 2648914a3f7SHong Zhang &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, 2658914a3f7SHong Zhang &lu->mem_usage, &stat, &info); 2668914a3f7SHong Zhang #else 26775af56d4SHong Zhang dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C, 26875af56d4SHong Zhang &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr, 26975af56d4SHong Zhang &lu->mem_usage, &stat, &info); 2708914a3f7SHong Zhang #endif 27175af56d4SHong Zhang ierr = VecRestoreArray(b,&barray);CHKERRQ(ierr); 27275af56d4SHong Zhang ierr = VecRestoreArray(x,&xarray);CHKERRQ(ierr); 27375af56d4SHong Zhang 274958c9bccSBarry Smith if ( !info || info == lu->A.ncol+1 ) { 27575af56d4SHong Zhang if ( lu->options.IterRefine ) { 2768914a3f7SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"Iterative Refinement:\n"); 2778914a3f7SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF," %8s%8s%16s%16s\n", "rhs", "Steps", "FERR", "BERR"); 27875af56d4SHong Zhang for (i = 0; i < 1; ++i) 2798914a3f7SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF," %8d%8d%16e%16e\n", i+1, stat.RefineSteps, ferr, berr); 28075af56d4SHong Zhang } 2818914a3f7SHong Zhang } else if ( info > 0 ){ 2828914a3f7SHong Zhang if ( lu->lwork == -1 ) { 28377431f27SBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," ** Estimated memory: %D bytes\n", info - lu->A.ncol); 2848914a3f7SHong Zhang } else { 28577431f27SBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," Warning: gssvx() returns info %D\n",info); 2868914a3f7SHong Zhang } 2878914a3f7SHong Zhang } else if (info < 0){ 28877431f27SBarry Smith SETERRQ2(PETSC_ERR_LIB, "info = %D, the %D-th argument in gssvx() had an illegal value", info,-info); 28914b396bbSKris Buschelman } 29014b396bbSKris Buschelman 2918914a3f7SHong Zhang if ( lu->options.PrintStat ) { 2928914a3f7SHong Zhang ierr = PetscPrintf(PETSC_COMM_SELF,"MatSolve__SuperLU():\n"); 2938914a3f7SHong Zhang StatPrint(&stat); 2948914a3f7SHong Zhang } 29575af56d4SHong Zhang StatFree(&stat); 29675af56d4SHong Zhang PetscFunctionReturn(0); 29775af56d4SHong Zhang } 29814b396bbSKris Buschelman 29914b396bbSKris Buschelman #undef __FUNCT__ 300c29e884eSHong Zhang #define __FUNCT__ "MatSolve_SuperLU" 301c29e884eSHong Zhang PetscErrorCode MatSolve_SuperLU(Mat A,Vec b,Vec x) 302c29e884eSHong Zhang { 303c29e884eSHong Zhang Mat_SuperLU *lu = (Mat_SuperLU*)A->spptr; 304c29e884eSHong Zhang PetscErrorCode ierr; 305c29e884eSHong Zhang 306c29e884eSHong Zhang PetscFunctionBegin; 307c29e884eSHong Zhang lu->options.Trans = TRANS; 308c29e884eSHong Zhang ierr = MatSolve_SuperLU_Private(A,b,x);CHKERRQ(ierr); 309c29e884eSHong Zhang PetscFunctionReturn(0); 310c29e884eSHong Zhang } 311c29e884eSHong Zhang 312c29e884eSHong Zhang #undef __FUNCT__ 313c7c1fe80SHong Zhang #define __FUNCT__ "MatSolveTranspose_SuperLU" 314c7c1fe80SHong Zhang PetscErrorCode MatSolveTranspose_SuperLU(Mat A,Vec b,Vec x) 315c7c1fe80SHong Zhang { 316c7c1fe80SHong Zhang Mat_SuperLU *lu = (Mat_SuperLU*)A->spptr; 317c7c1fe80SHong Zhang PetscErrorCode ierr; 318c7c1fe80SHong Zhang 319c7c1fe80SHong Zhang PetscFunctionBegin; 320c7c1fe80SHong Zhang lu->options.Trans = NOTRANS; 321c29e884eSHong Zhang ierr = MatSolve_SuperLU_Private(A,b,x);CHKERRQ(ierr); 322c7c1fe80SHong Zhang PetscFunctionReturn(0); 323c7c1fe80SHong Zhang } 324c7c1fe80SHong Zhang 32514b396bbSKris Buschelman 32614b396bbSKris Buschelman /* 32714b396bbSKris Buschelman Note the r permutation is ignored 32814b396bbSKris Buschelman */ 32914b396bbSKris Buschelman #undef __FUNCT__ 330f0c56d0fSKris Buschelman #define __FUNCT__ "MatLUFactorSymbolic_SuperLU" 3310481f469SBarry Smith PetscErrorCode MatLUFactorSymbolic_SuperLU(Mat F,Mat A,IS r,IS c,const MatFactorInfo *info) 33214b396bbSKris Buschelman { 333719d5645SBarry Smith Mat_SuperLU *lu = (Mat_SuperLU*)((F)->spptr); 334b24902e0SBarry Smith PetscErrorCode ierr; 335d0f46423SBarry Smith PetscInt m=A->rmap->n,n=A->cmap->n; 336b24902e0SBarry Smith 337b24902e0SBarry Smith PetscFunctionBegin; 338b24902e0SBarry Smith 339b24902e0SBarry Smith /* Allocate spaces (notice sizes are for the transpose) */ 340b24902e0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&lu->etree);CHKERRQ(ierr); 341b24902e0SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&lu->perm_r);CHKERRQ(ierr); 342b24902e0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&lu->perm_c);CHKERRQ(ierr); 343b24902e0SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&lu->R);CHKERRQ(ierr); 344b24902e0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&lu->C);CHKERRQ(ierr); 345b24902e0SBarry Smith 346b24902e0SBarry Smith /* create rhs and solution x without allocate space for .Store */ 347b24902e0SBarry Smith #if defined(PETSC_USE_COMPLEX) 348b24902e0SBarry Smith zCreate_Dense_Matrix(&lu->B, m, 1, PETSC_NULL, m, SLU_DN, SLU_Z, SLU_GE); 349b24902e0SBarry Smith zCreate_Dense_Matrix(&lu->X, m, 1, PETSC_NULL, m, SLU_DN, SLU_Z, SLU_GE); 350b24902e0SBarry Smith #else 351b24902e0SBarry Smith dCreate_Dense_Matrix(&lu->B, m, 1, PETSC_NULL, m, SLU_DN, SLU_D, SLU_GE); 352b24902e0SBarry Smith dCreate_Dense_Matrix(&lu->X, m, 1, PETSC_NULL, m, SLU_DN, SLU_D, SLU_GE); 353b24902e0SBarry Smith #endif 354b24902e0SBarry Smith 355b24902e0SBarry Smith lu->flg = DIFFERENT_NONZERO_PATTERN; 356b24902e0SBarry Smith lu->CleanUpSuperLU = PETSC_TRUE; 357719d5645SBarry Smith (F)->ops->lufactornumeric = MatLUFactorNumeric_SuperLU; 358b24902e0SBarry Smith PetscFunctionReturn(0); 359b24902e0SBarry Smith } 360b24902e0SBarry Smith 36135bd34faSBarry Smith EXTERN_C_BEGIN 36235bd34faSBarry Smith #undef __FUNCT__ 36335bd34faSBarry Smith #define __FUNCT__ "MatFactorGetSolverPackage_seqaij_superlu" 36435bd34faSBarry Smith PetscErrorCode MatFactorGetSolverPackage_seqaij_superlu(Mat A,const MatSolverPackage *type) 36535bd34faSBarry Smith { 36635bd34faSBarry Smith PetscFunctionBegin; 36735bd34faSBarry Smith *type = MAT_SOLVER_SUPERLU; 36835bd34faSBarry Smith PetscFunctionReturn(0); 36935bd34faSBarry Smith } 37035bd34faSBarry Smith EXTERN_C_END 37135bd34faSBarry Smith 372b24902e0SBarry Smith 373b24902e0SBarry Smith /*MC 374b5e56a35SBarry Smith MAT_SOLVER_SUPERLU = "superlu" - A solver package roviding direct solvers (LU) for sequential matrices 375b24902e0SBarry Smith via the external package SuperLU. 376b24902e0SBarry Smith 3775c9eb25fSBarry Smith Use config/configure.py --download-superlu to have PETSc installed with SuperLU 378b24902e0SBarry Smith 379b24902e0SBarry Smith Options Database Keys: 3805c9eb25fSBarry Smith + -mat_superlu_ordering <0,1,2,3> - 0: natural ordering, 381b24902e0SBarry Smith 1: MMD applied to A'*A, 382b24902e0SBarry Smith 2: MMD applied to A'+A, 383b24902e0SBarry Smith 3: COLAMD, approximate minimum degree column ordering 384b24902e0SBarry Smith . -mat_superlu_iterrefine - have SuperLU do iterative refinement after the triangular solve 385b24902e0SBarry Smith choices: NOREFINE, SINGLE, DOUBLE, EXTRA; default is NOREFINE 386b24902e0SBarry Smith - -mat_superlu_printstat - print SuperLU statistics about the factorization 387b24902e0SBarry Smith 3885c9eb25fSBarry Smith Notes: Do not confuse this with MAT_SOLVER_SUPERLU_DIST which is for parallel sparse solves 3895c9eb25fSBarry Smith 390b24902e0SBarry Smith Level: beginner 391b24902e0SBarry Smith 39241c8de11SBarry Smith .seealso: PCLU, MAT_SOLVER_SUPERLU_DIST, MAT_SOLVER_MUMPS, MAT_SOLVER_SPOOLES, PCFactorSetMatSolverPackage(), MatSolverPackage 393b24902e0SBarry Smith M*/ 394b24902e0SBarry Smith 3955c9eb25fSBarry Smith EXTERN_C_BEGIN 396b24902e0SBarry Smith #undef __FUNCT__ 397b24902e0SBarry Smith #define __FUNCT__ "MatGetFactor_seqaij_superlu" 3985c9eb25fSBarry Smith PetscErrorCode MatGetFactor_seqaij_superlu(Mat A,MatFactorType ftype,Mat *F) 399b24902e0SBarry Smith { 40014b396bbSKris Buschelman Mat B; 401f0c56d0fSKris Buschelman Mat_SuperLU *lu; 4026849ba73SBarry Smith PetscErrorCode ierr; 403e631078cSBarry Smith PetscInt indx; 4049ce50919SHong Zhang PetscTruth flg; 4055ca28756SHong Zhang const char *colperm[]={"NATURAL","MMD_ATA","MMD_AT_PLUS_A","COLAMD"}; /* MY_PERMC - not supported by the petsc interface yet */ 4065ca28756SHong Zhang const char *iterrefine[]={"NOREFINE", "SINGLE", "DOUBLE", "EXTRA"}; 4075ca28756SHong Zhang const char *rowperm[]={"NOROWPERM", "LargeDiag"}; /* MY_PERMC - not supported by the petsc interface yet */ 40814b396bbSKris Buschelman 40914b396bbSKris Buschelman PetscFunctionBegin; 4107adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 411d0f46423SBarry Smith ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 4127adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 413899d7b4fSKris Buschelman ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr); 414f0c56d0fSKris Buschelman 415b24902e0SBarry Smith B->ops->lufactorsymbolic = MatLUFactorSymbolic_SuperLU; 416b24902e0SBarry Smith B->ops->destroy = MatDestroy_SuperLU; 4173519fcdcSHong Zhang B->ops->view = MatView_SuperLU; 4185c9eb25fSBarry Smith B->factor = MAT_FACTOR_LU; 41994b7f48cSBarry Smith B->assembled = PETSC_TRUE; /* required by -ksp_view */ 4205c9eb25fSBarry Smith B->preallocated = PETSC_TRUE; 42114b396bbSKris Buschelman 422b24902e0SBarry Smith ierr = PetscNewLog(B,Mat_SuperLU,&lu);CHKERRQ(ierr); 4239ce50919SHong Zhang set_default_options(&lu->options); 4248914a3f7SHong Zhang /* equilibration causes error in solve(), thus not supported here. See dgssvx.c for possible reason. */ 4258914a3f7SHong Zhang lu->options.Equil = NO; 4269ce50919SHong Zhang lu->options.PrintStat = NO; 4278914a3f7SHong Zhang lu->lwork = 0; /* allocate space internally by system malloc */ 4289ce50919SHong Zhang 4297adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"SuperLU Options","Mat");CHKERRQ(ierr); 4308914a3f7SHong Zhang ierr = PetscOptionsEList("-mat_superlu_colperm","ColPerm","None",colperm,4,colperm[3],&indx,&flg);CHKERRQ(ierr); 4319ce50919SHong Zhang if (flg) {lu->options.ColPerm = (colperm_t)indx;} 4328914a3f7SHong Zhang ierr = PetscOptionsEList("-mat_superlu_iterrefine","IterRefine","None",iterrefine,4,iterrefine[0],&indx,&flg);CHKERRQ(ierr); 4339ce50919SHong Zhang if (flg) { lu->options.IterRefine = (IterRefine_t)indx;} 4344dc4c822SBarry Smith ierr = PetscOptionsTruth("-mat_superlu_symmetricmode","SymmetricMode","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); 4359ce50919SHong Zhang if (flg) lu->options.SymmetricMode = YES; 4368914a3f7SHong Zhang ierr = PetscOptionsReal("-mat_superlu_diagpivotthresh","DiagPivotThresh","None",lu->options.DiagPivotThresh,&lu->options.DiagPivotThresh,PETSC_NULL);CHKERRQ(ierr); 4374dc4c822SBarry Smith ierr = PetscOptionsTruth("-mat_superlu_pivotgrowth","PivotGrowth","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); 4389ce50919SHong Zhang if (flg) lu->options.PivotGrowth = YES; 4394dc4c822SBarry Smith ierr = PetscOptionsTruth("-mat_superlu_conditionnumber","ConditionNumber","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); 4409ce50919SHong Zhang if (flg) lu->options.ConditionNumber = YES; 4418914a3f7SHong Zhang ierr = PetscOptionsEList("-mat_superlu_rowperm","rowperm","None",rowperm,2,rowperm[0],&indx,&flg);CHKERRQ(ierr); 4429ce50919SHong Zhang if (flg) {lu->options.RowPerm = (rowperm_t)indx;} 4434dc4c822SBarry Smith ierr = PetscOptionsTruth("-mat_superlu_replacetinypivot","ReplaceTinyPivot","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); 4449ce50919SHong Zhang if (flg) lu->options.ReplaceTinyPivot = YES; 4454dc4c822SBarry Smith ierr = PetscOptionsTruth("-mat_superlu_printstat","PrintStat","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr); 4469ce50919SHong Zhang if (flg) lu->options.PrintStat = YES; 4478914a3f7SHong Zhang ierr = PetscOptionsInt("-mat_superlu_lwork","size of work array in bytes used by factorization","None",lu->lwork,&lu->lwork,PETSC_NULL);CHKERRQ(ierr); 4485fe6150dSHong Zhang if (lu->lwork > 0 ){ 4495fe6150dSHong Zhang ierr = PetscMalloc(lu->lwork,&lu->work);CHKERRQ(ierr); 4505fe6150dSHong Zhang } else if (lu->lwork != 0 && lu->lwork != -1){ 45177431f27SBarry Smith ierr = PetscPrintf(PETSC_COMM_SELF," Warning: lwork %D is not supported by SUPERLU. The default lwork=0 is used.\n",lu->lwork); 4528914a3f7SHong Zhang lu->lwork = 0; 4538914a3f7SHong Zhang } 4549ce50919SHong Zhang PetscOptionsEnd(); 4559ce50919SHong Zhang 45675af56d4SHong Zhang #ifdef SUPERLU2 4575c9eb25fSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatCreateNull","MatCreateNull_SuperLU",(void(*)(void))MatCreateNull_SuperLU);CHKERRQ(ierr); 45875af56d4SHong Zhang #endif 45935bd34faSBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatFactorGetSolverPackage_C","MatFactorGetSolverPackage_seqaij_superlu",MatFactorGetSolverPackage_seqaij_superlu);CHKERRQ(ierr); 4605c9eb25fSBarry Smith B->spptr = lu; 461899d7b4fSKris Buschelman *F = B; 46214b396bbSKris Buschelman PetscFunctionReturn(0); 46314b396bbSKris Buschelman } 4645c9eb25fSBarry Smith EXTERN_C_END 465