xref: /petsc/src/mat/impls/aij/seq/superlu/superlu.c (revision b24902e06ab141841ce6546a773244be2474cd18)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
214b396bbSKris Buschelman 
35a46d3faSBarry Smith /*  --------------------------------------------------------------------
45a46d3faSBarry Smith 
55a46d3faSBarry Smith      This file implements a subclass of the SeqAIJ matrix class that uses
65a46d3faSBarry Smith      the SuperLU 3.0 sparse solver. You can use this as a starting point for
75a46d3faSBarry Smith      implementing your own subclass of a PETSc matrix class.
85a46d3faSBarry Smith 
95a46d3faSBarry Smith      This demonstrates a way to make an implementation inheritence of a PETSc
105a46d3faSBarry Smith      matrix type. This means constructing a new matrix type (SuperLU) by changing some
115a46d3faSBarry Smith      of the methods of the previous type (SeqAIJ), adding additional data, and possibly
125a46d3faSBarry Smith      additional method. (See any book on object oriented programming).
1314b396bbSKris Buschelman */
1414b396bbSKris Buschelman 
155a46d3faSBarry Smith /*
165a46d3faSBarry Smith      Defines the data structure for the base matrix type (SeqAIJ)
175a46d3faSBarry Smith */
1814b396bbSKris Buschelman #include "src/mat/impls/aij/seq/aij.h"
1914b396bbSKris Buschelman 
205a46d3faSBarry Smith /*
215a46d3faSBarry Smith      SuperLU include files
225a46d3faSBarry Smith */
2314b396bbSKris Buschelman EXTERN_C_BEGIN
2414b396bbSKris Buschelman #if defined(PETSC_USE_COMPLEX)
2566f57492SHong Zhang #include "slu_zdefs.h"
2614b396bbSKris Buschelman #else
2766f57492SHong Zhang #include "slu_ddefs.h"
2814b396bbSKris Buschelman #endif
2966f57492SHong Zhang #include "slu_util.h"
3014b396bbSKris Buschelman EXTERN_C_END
3114b396bbSKris Buschelman 
325a46d3faSBarry Smith /*
335a46d3faSBarry Smith      This is the data we are "ADDING" to the SeqAIJ matrix type to get the SuperLU matrix type
345a46d3faSBarry Smith */
3514b396bbSKris Buschelman typedef struct {
3675af56d4SHong Zhang   SuperMatrix       A,L,U,B,X;
3775af56d4SHong Zhang   superlu_options_t options;
38da7a1d00SHong Zhang   PetscInt          *perm_c; /* column permutation vector */
39da7a1d00SHong Zhang   PetscInt          *perm_r; /* row permutations from partial pivoting */
40da7a1d00SHong Zhang   PetscInt          *etree;
41da7a1d00SHong Zhang   PetscReal         *R, *C;
4275af56d4SHong Zhang   char              equed[1];
43da7a1d00SHong Zhang   PetscInt          lwork;
4475af56d4SHong Zhang   void              *work;
45da7a1d00SHong Zhang   PetscReal         rpg, rcond;
4675af56d4SHong Zhang   mem_usage_t       mem_usage;
4775af56d4SHong Zhang   MatStructure      flg;
4814b396bbSKris Buschelman 
4914b396bbSKris Buschelman   /* Flag to clean up (non-global) SuperLU objects during Destroy */
5014b396bbSKris Buschelman   PetscTruth CleanUpSuperLU;
51f0c56d0fSKris Buschelman } Mat_SuperLU;
5214b396bbSKris Buschelman 
53e0e586b9SHong Zhang extern PetscErrorCode MatFactorInfo_SuperLU(Mat,PetscViewer);
54e0e586b9SHong Zhang extern PetscErrorCode MatLUFactorNumeric_SuperLU(Mat,MatFactorInfo *,Mat *);
55e0e586b9SHong Zhang extern PetscErrorCode MatDestroy_SuperLU(Mat);
56e0e586b9SHong Zhang extern PetscErrorCode MatView_SuperLU(Mat,PetscViewer);
57e0e586b9SHong Zhang extern PetscErrorCode MatAssemblyEnd_SuperLU(Mat,MatAssemblyType);
58e0e586b9SHong Zhang extern PetscErrorCode MatSolve_SuperLU(Mat,Vec,Vec);
59e0e586b9SHong Zhang extern PetscErrorCode MatSolveTranspose_SuperLU(Mat,Vec,Vec);
60e0e586b9SHong Zhang extern PetscErrorCode MatLUFactorSymbolic_SuperLU(Mat,IS,IS,MatFactorInfo *,Mat *);
61e0e586b9SHong Zhang extern PetscErrorCode MatDuplicate_SuperLU(Mat, MatDuplicateOption, Mat *);
62e0e586b9SHong Zhang 
635a46d3faSBarry Smith /*
645a46d3faSBarry Smith     Utility function
655a46d3faSBarry Smith */
665a46d3faSBarry Smith #undef __FUNCT__
675a46d3faSBarry Smith #define __FUNCT__ "MatFactorInfo_SuperLU"
685a46d3faSBarry Smith PetscErrorCode MatFactorInfo_SuperLU(Mat A,PetscViewer viewer)
695a46d3faSBarry Smith {
705a46d3faSBarry Smith   Mat_SuperLU       *lu= (Mat_SuperLU*)A->spptr;
715a46d3faSBarry Smith   PetscErrorCode    ierr;
725a46d3faSBarry Smith   superlu_options_t options;
735a46d3faSBarry Smith 
745a46d3faSBarry Smith   PetscFunctionBegin;
755a46d3faSBarry Smith   /* check if matrix is superlu_dist type */
765a46d3faSBarry Smith   if (A->ops->solve != MatSolve_SuperLU) PetscFunctionReturn(0);
775a46d3faSBarry Smith 
785a46d3faSBarry Smith   options = lu->options;
795a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"SuperLU run parameters:\n");CHKERRQ(ierr);
805a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  Equil: %s\n",(options.Equil != NO) ? "YES": "NO");CHKERRQ(ierr);
815a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  ColPerm: %D\n",options.ColPerm);CHKERRQ(ierr);
825a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  IterRefine: %D\n",options.IterRefine);CHKERRQ(ierr);
835a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  SymmetricMode: %s\n",(options.SymmetricMode != NO) ? "YES": "NO");CHKERRQ(ierr);
845a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  DiagPivotThresh: %g\n",options.DiagPivotThresh);CHKERRQ(ierr);
855a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  PivotGrowth: %s\n",(options.PivotGrowth != NO) ? "YES": "NO");CHKERRQ(ierr);
865a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  ConditionNumber: %s\n",(options.ConditionNumber != NO) ? "YES": "NO");CHKERRQ(ierr);
875a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  RowPerm: %D\n",options.RowPerm);CHKERRQ(ierr);
885a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  ReplaceTinyPivot: %s\n",(options.ReplaceTinyPivot != NO) ? "YES": "NO");CHKERRQ(ierr);
895a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  PrintStat: %s\n",(options.PrintStat != NO) ? "YES": "NO");CHKERRQ(ierr);
905a46d3faSBarry Smith   ierr = PetscViewerASCIIPrintf(viewer,"  lwork: %D\n",lu->lwork);CHKERRQ(ierr);
915a46d3faSBarry Smith 
925a46d3faSBarry Smith   PetscFunctionReturn(0);
935a46d3faSBarry Smith }
945a46d3faSBarry Smith 
955a46d3faSBarry Smith /*
965a46d3faSBarry Smith     These are the methods provided to REPLACE the corresponding methods of the
975a46d3faSBarry Smith    SeqAIJ matrix class. Other methods of SeqAIJ are not replaced
985a46d3faSBarry Smith */
995a46d3faSBarry Smith #undef __FUNCT__
1005a46d3faSBarry Smith #define __FUNCT__ "MatLUFactorNumeric_SuperLU"
1015a46d3faSBarry Smith PetscErrorCode MatLUFactorNumeric_SuperLU(Mat A,MatFactorInfo *info,Mat *F)
1025a46d3faSBarry Smith {
1035a46d3faSBarry Smith   Mat_SeqAIJ     *aa = (Mat_SeqAIJ*)(A)->data;
1045a46d3faSBarry Smith   Mat_SuperLU    *lu = (Mat_SuperLU*)(*F)->spptr;
1055a46d3faSBarry Smith   PetscErrorCode ierr;
1065a46d3faSBarry Smith   PetscInt       sinfo;
1075a46d3faSBarry Smith   SuperLUStat_t  stat;
1085a46d3faSBarry Smith   PetscReal      ferr, berr;
1095a46d3faSBarry Smith   NCformat       *Ustore;
1105a46d3faSBarry Smith   SCformat       *Lstore;
1115a46d3faSBarry Smith 
1125a46d3faSBarry Smith   PetscFunctionBegin;
1135a46d3faSBarry Smith   if (lu->flg == SAME_NONZERO_PATTERN){ /* successing numerical factorization */
1145a46d3faSBarry Smith     lu->options.Fact = SamePattern;
1155a46d3faSBarry Smith     /* Ref: ~SuperLU_3.0/EXAMPLE/dlinsolx2.c */
1165a46d3faSBarry Smith     Destroy_SuperMatrix_Store(&lu->A);
1175a46d3faSBarry Smith     if ( lu->lwork >= 0 ) {
1185a46d3faSBarry Smith       Destroy_SuperNode_Matrix(&lu->L);
1195a46d3faSBarry Smith       Destroy_CompCol_Matrix(&lu->U);
1205a46d3faSBarry Smith       lu->options.Fact = SamePattern;
1215a46d3faSBarry Smith     }
1225a46d3faSBarry Smith   }
1235a46d3faSBarry Smith 
1245a46d3faSBarry Smith   /* Create the SuperMatrix for lu->A=A^T:
1255a46d3faSBarry Smith        Since SuperLU likes column-oriented matrices,we pass it the transpose,
1265a46d3faSBarry Smith        and then solve A^T X = B in MatSolve(). */
1275a46d3faSBarry Smith #if defined(PETSC_USE_COMPLEX)
1285a46d3faSBarry Smith   zCreate_CompCol_Matrix(&lu->A,A->cmap.n,A->rmap.n,aa->nz,(doublecomplex*)aa->a,aa->j,aa->i,
1295a46d3faSBarry Smith                            SLU_NC,SLU_Z,SLU_GE);
1305a46d3faSBarry Smith #else
1315a46d3faSBarry Smith   dCreate_CompCol_Matrix(&lu->A,A->cmap.n,A->rmap.n,aa->nz,aa->a,aa->j,aa->i,
1325a46d3faSBarry Smith                            SLU_NC,SLU_D,SLU_GE);
1335a46d3faSBarry Smith #endif
1345a46d3faSBarry Smith 
1355a46d3faSBarry Smith   /* Initialize the statistics variables. */
1365a46d3faSBarry Smith   StatInit(&stat);
1375a46d3faSBarry Smith 
1385a46d3faSBarry Smith   /* Numerical factorization */
1395a46d3faSBarry Smith   lu->B.ncol = 0;  /* Indicate not to solve the system */
1405a46d3faSBarry Smith #if defined(PETSC_USE_COMPLEX)
1415a46d3faSBarry Smith    zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C,
1425a46d3faSBarry Smith            &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr,
1435a46d3faSBarry Smith            &lu->mem_usage, &stat, &sinfo);
1445a46d3faSBarry Smith #else
1455a46d3faSBarry Smith   dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C,
1465a46d3faSBarry Smith            &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr,
1475a46d3faSBarry Smith            &lu->mem_usage, &stat, &sinfo);
1485a46d3faSBarry Smith #endif
1495a46d3faSBarry Smith   if ( !sinfo || sinfo == lu->A.ncol+1 ) {
1505a46d3faSBarry Smith     if ( lu->options.PivotGrowth )
1515a46d3faSBarry Smith       ierr = PetscPrintf(PETSC_COMM_SELF,"  Recip. pivot growth = %e\n", lu->rpg);
1525a46d3faSBarry Smith     if ( lu->options.ConditionNumber )
1535a46d3faSBarry Smith       ierr = PetscPrintf(PETSC_COMM_SELF,"  Recip. condition number = %e\n", lu->rcond);
1545a46d3faSBarry Smith   } else if ( sinfo > 0 ){
1555a46d3faSBarry Smith     if ( lu->lwork == -1 ) {
1565a46d3faSBarry Smith       ierr = PetscPrintf(PETSC_COMM_SELF,"  ** Estimated memory: %D bytes\n", sinfo - lu->A.ncol);
1575a46d3faSBarry Smith     } else {
1585a46d3faSBarry Smith       ierr = PetscPrintf(PETSC_COMM_SELF,"  Warning: gssvx() returns info %D\n",sinfo);
1595a46d3faSBarry Smith     }
1605a46d3faSBarry Smith   } else { /* sinfo < 0 */
1615a46d3faSBarry Smith     SETERRQ2(PETSC_ERR_LIB, "info = %D, the %D-th argument in gssvx() had an illegal value", sinfo,-sinfo);
1625a46d3faSBarry Smith   }
1635a46d3faSBarry Smith 
1645a46d3faSBarry Smith   if ( lu->options.PrintStat ) {
1655a46d3faSBarry Smith     ierr = PetscPrintf(PETSC_COMM_SELF,"MatLUFactorNumeric_SuperLU():\n");
1665a46d3faSBarry Smith     StatPrint(&stat);
1675a46d3faSBarry Smith     Lstore = (SCformat *) lu->L.Store;
1685a46d3faSBarry Smith     Ustore = (NCformat *) lu->U.Store;
1695a46d3faSBarry Smith     ierr = PetscPrintf(PETSC_COMM_SELF,"  No of nonzeros in factor L = %D\n", Lstore->nnz);
1705a46d3faSBarry Smith     ierr = PetscPrintf(PETSC_COMM_SELF,"  No of nonzeros in factor U = %D\n", Ustore->nnz);
1715a46d3faSBarry Smith     ierr = PetscPrintf(PETSC_COMM_SELF,"  No of nonzeros in L+U = %D\n", Lstore->nnz + Ustore->nnz - lu->A.ncol);
1725a46d3faSBarry Smith     ierr = PetscPrintf(PETSC_COMM_SELF,"  L\\U MB %.3f\ttotal MB needed %.3f\texpansions %D\n",
1735a46d3faSBarry Smith 	       lu->mem_usage.for_lu/1e6, lu->mem_usage.total_needed/1e6,
1745a46d3faSBarry Smith 	       lu->mem_usage.expansions);
1755a46d3faSBarry Smith   }
1765a46d3faSBarry Smith   StatFree(&stat);
1775a46d3faSBarry Smith 
1785a46d3faSBarry Smith   lu->flg = SAME_NONZERO_PATTERN;
1795a46d3faSBarry Smith   PetscFunctionReturn(0);
1805a46d3faSBarry Smith }
1815a46d3faSBarry Smith 
18214b396bbSKris Buschelman #undef __FUNCT__
183f0c56d0fSKris Buschelman #define __FUNCT__ "MatDestroy_SuperLU"
184dfbe8321SBarry Smith PetscErrorCode MatDestroy_SuperLU(Mat A)
18514b396bbSKris Buschelman {
186dfbe8321SBarry Smith   PetscErrorCode ierr;
187f0c56d0fSKris Buschelman   Mat_SuperLU    *lu=(Mat_SuperLU*)A->spptr;
18814b396bbSKris Buschelman 
18914b396bbSKris Buschelman   PetscFunctionBegin;
19075af56d4SHong Zhang   if (lu->CleanUpSuperLU) { /* Free the SuperLU datastructures */
19175af56d4SHong Zhang     Destroy_SuperMatrix_Store(&lu->A);
19275af56d4SHong Zhang     Destroy_SuperMatrix_Store(&lu->B);
19375af56d4SHong Zhang     Destroy_SuperMatrix_Store(&lu->X);
1949ce50919SHong Zhang 
1959ce50919SHong Zhang     ierr = PetscFree(lu->etree);CHKERRQ(ierr);
1969ce50919SHong Zhang     ierr = PetscFree(lu->perm_r);CHKERRQ(ierr);
1979ce50919SHong Zhang     ierr = PetscFree(lu->perm_c);CHKERRQ(ierr);
1989ce50919SHong Zhang     ierr = PetscFree(lu->R);CHKERRQ(ierr);
1999ce50919SHong Zhang     ierr = PetscFree(lu->C);CHKERRQ(ierr);
20075af56d4SHong Zhang     if ( lu->lwork >= 0 ) {
201fb3e25aaSKris Buschelman       Destroy_SuperNode_Matrix(&lu->L);
202fb3e25aaSKris Buschelman       Destroy_CompCol_Matrix(&lu->U);
20375af56d4SHong Zhang     }
204fb3e25aaSKris Buschelman   }
205*b24902e0SBarry Smith   ierr = MatDestroy_SeqAIJ(A);CHKERRQ(ierr);
20614b396bbSKris Buschelman   PetscFunctionReturn(0);
20714b396bbSKris Buschelman }
20814b396bbSKris Buschelman 
20914b396bbSKris Buschelman #undef __FUNCT__
210f0c56d0fSKris Buschelman #define __FUNCT__ "MatView_SuperLU"
211dfbe8321SBarry Smith PetscErrorCode MatView_SuperLU(Mat A,PetscViewer viewer)
21214b396bbSKris Buschelman {
213dfbe8321SBarry Smith   PetscErrorCode    ierr;
21432077d6dSBarry Smith   PetscTruth        iascii;
21514b396bbSKris Buschelman   PetscViewerFormat format;
216f0c56d0fSKris Buschelman   Mat_SuperLU       *lu=(Mat_SuperLU*)(A->spptr);
21714b396bbSKris Buschelman 
21814b396bbSKris Buschelman   PetscFunctionBegin;
219*b24902e0SBarry Smith   ierr = MatView_SeqAIJ(A,viewer);CHKERRQ(ierr);
22014b396bbSKris Buschelman 
22132077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
22232077d6dSBarry Smith   if (iascii) {
22314b396bbSKris Buschelman     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
2242f59403fSHong Zhang     if (format == PETSC_VIEWER_ASCII_INFO) {
225f0c56d0fSKris Buschelman       ierr = MatFactorInfo_SuperLU(A,viewer);CHKERRQ(ierr);
22614b396bbSKris Buschelman     }
22714b396bbSKris Buschelman   }
22814b396bbSKris Buschelman   PetscFunctionReturn(0);
22914b396bbSKris Buschelman }
23014b396bbSKris Buschelman 
23114b396bbSKris Buschelman 
23214b396bbSKris Buschelman #undef __FUNCT__
233c29e884eSHong Zhang #define __FUNCT__ "MatSolve_SuperLU_Private"
234c29e884eSHong Zhang PetscErrorCode MatSolve_SuperLU_Private(Mat A,Vec b,Vec x)
23514b396bbSKris Buschelman {
236f0c56d0fSKris Buschelman   Mat_SuperLU    *lu = (Mat_SuperLU*)A->spptr;
23775af56d4SHong Zhang   PetscScalar    *barray,*xarray;
238dfbe8321SBarry Smith   PetscErrorCode ierr;
239da7a1d00SHong Zhang   PetscInt       info,i;
24075af56d4SHong Zhang   SuperLUStat_t  stat;
241da7a1d00SHong Zhang   PetscReal      ferr,berr;
24214b396bbSKris Buschelman 
24314b396bbSKris Buschelman   PetscFunctionBegin;
244937a6b0eSHong Zhang   if ( lu->lwork == -1 ) {
245937a6b0eSHong Zhang     PetscFunctionReturn(0);
246937a6b0eSHong Zhang   }
24775af56d4SHong Zhang   lu->B.ncol = 1;   /* Set the number of right-hand side */
24875af56d4SHong Zhang   ierr = VecGetArray(b,&barray);CHKERRQ(ierr);
24975af56d4SHong Zhang   ierr = VecGetArray(x,&xarray);CHKERRQ(ierr);
2505fe6150dSHong Zhang 
2515fe6150dSHong Zhang #if defined(PETSC_USE_COMPLEX)
2525fe6150dSHong Zhang   ((DNformat*)lu->B.Store)->nzval = (doublecomplex*)barray;
2535fe6150dSHong Zhang   ((DNformat*)lu->X.Store)->nzval = (doublecomplex*)xarray;
2545fe6150dSHong Zhang #else
2555fe6150dSHong Zhang   ((DNformat*)lu->B.Store)->nzval = barray;
25675af56d4SHong Zhang   ((DNformat*)lu->X.Store)->nzval = xarray;
2575fe6150dSHong Zhang #endif
25875af56d4SHong Zhang 
25975af56d4SHong Zhang   /* Initialize the statistics variables. */
26075af56d4SHong Zhang   StatInit(&stat);
26175af56d4SHong Zhang 
26275af56d4SHong Zhang   lu->options.Fact  = FACTORED; /* Indicate the factored form of A is supplied. */
2638914a3f7SHong Zhang #if defined(PETSC_USE_COMPLEX)
2648914a3f7SHong Zhang   zgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C,
2658914a3f7SHong Zhang            &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr,
2668914a3f7SHong Zhang            &lu->mem_usage, &stat, &info);
2678914a3f7SHong Zhang #else
26875af56d4SHong Zhang   dgssvx(&lu->options, &lu->A, lu->perm_c, lu->perm_r, lu->etree, lu->equed, lu->R, lu->C,
26975af56d4SHong Zhang            &lu->L, &lu->U, lu->work, lu->lwork, &lu->B, &lu->X, &lu->rpg, &lu->rcond, &ferr, &berr,
27075af56d4SHong Zhang            &lu->mem_usage, &stat, &info);
2718914a3f7SHong Zhang #endif
27275af56d4SHong Zhang   ierr = VecRestoreArray(b,&barray);CHKERRQ(ierr);
27375af56d4SHong Zhang   ierr = VecRestoreArray(x,&xarray);CHKERRQ(ierr);
27475af56d4SHong Zhang 
275958c9bccSBarry Smith   if ( !info || info == lu->A.ncol+1 ) {
27675af56d4SHong Zhang     if ( lu->options.IterRefine ) {
2778914a3f7SHong Zhang       ierr = PetscPrintf(PETSC_COMM_SELF,"Iterative Refinement:\n");
2788914a3f7SHong Zhang       ierr = PetscPrintf(PETSC_COMM_SELF,"  %8s%8s%16s%16s\n", "rhs", "Steps", "FERR", "BERR");
27975af56d4SHong Zhang       for (i = 0; i < 1; ++i)
2808914a3f7SHong Zhang         ierr = PetscPrintf(PETSC_COMM_SELF,"  %8d%8d%16e%16e\n", i+1, stat.RefineSteps, ferr, berr);
28175af56d4SHong Zhang     }
2828914a3f7SHong Zhang   } else if ( info > 0 ){
2838914a3f7SHong Zhang     if ( lu->lwork == -1 ) {
28477431f27SBarry Smith       ierr = PetscPrintf(PETSC_COMM_SELF,"  ** Estimated memory: %D bytes\n", info - lu->A.ncol);
2858914a3f7SHong Zhang     } else {
28677431f27SBarry Smith       ierr = PetscPrintf(PETSC_COMM_SELF,"  Warning: gssvx() returns info %D\n",info);
2878914a3f7SHong Zhang     }
2888914a3f7SHong Zhang   } else if (info < 0){
28977431f27SBarry Smith     SETERRQ2(PETSC_ERR_LIB, "info = %D, the %D-th argument in gssvx() had an illegal value", info,-info);
29014b396bbSKris Buschelman   }
29114b396bbSKris Buschelman 
2928914a3f7SHong Zhang   if ( lu->options.PrintStat ) {
2938914a3f7SHong Zhang     ierr = PetscPrintf(PETSC_COMM_SELF,"MatSolve__SuperLU():\n");
2948914a3f7SHong Zhang     StatPrint(&stat);
2958914a3f7SHong Zhang   }
29675af56d4SHong Zhang   StatFree(&stat);
29775af56d4SHong Zhang   PetscFunctionReturn(0);
29875af56d4SHong Zhang }
29914b396bbSKris Buschelman 
30014b396bbSKris Buschelman #undef __FUNCT__
301c29e884eSHong Zhang #define __FUNCT__ "MatSolve_SuperLU"
302c29e884eSHong Zhang PetscErrorCode MatSolve_SuperLU(Mat A,Vec b,Vec x)
303c29e884eSHong Zhang {
304c29e884eSHong Zhang   Mat_SuperLU    *lu = (Mat_SuperLU*)A->spptr;
305c29e884eSHong Zhang   PetscErrorCode ierr;
306c29e884eSHong Zhang 
307c29e884eSHong Zhang   PetscFunctionBegin;
308c29e884eSHong Zhang   lu->options.Trans = TRANS;
309c29e884eSHong Zhang   ierr = MatSolve_SuperLU_Private(A,b,x);CHKERRQ(ierr);
310c29e884eSHong Zhang   PetscFunctionReturn(0);
311c29e884eSHong Zhang }
312c29e884eSHong Zhang 
313c29e884eSHong Zhang #undef __FUNCT__
314c7c1fe80SHong Zhang #define __FUNCT__ "MatSolveTranspose_SuperLU"
315c7c1fe80SHong Zhang PetscErrorCode MatSolveTranspose_SuperLU(Mat A,Vec b,Vec x)
316c7c1fe80SHong Zhang {
317c7c1fe80SHong Zhang   Mat_SuperLU    *lu = (Mat_SuperLU*)A->spptr;
318c7c1fe80SHong Zhang   PetscErrorCode ierr;
319c7c1fe80SHong Zhang 
320c7c1fe80SHong Zhang   PetscFunctionBegin;
321c7c1fe80SHong Zhang   lu->options.Trans = NOTRANS;
322c29e884eSHong Zhang   ierr = MatSolve_SuperLU_Private(A,b,x);CHKERRQ(ierr);
323c7c1fe80SHong Zhang   PetscFunctionReturn(0);
324c7c1fe80SHong Zhang }
325c7c1fe80SHong Zhang 
32614b396bbSKris Buschelman 
32714b396bbSKris Buschelman /*
32814b396bbSKris Buschelman    Note the r permutation is ignored
32914b396bbSKris Buschelman */
33014b396bbSKris Buschelman #undef __FUNCT__
331f0c56d0fSKris Buschelman #define __FUNCT__ "MatLUFactorSymbolic_SuperLU"
332dfbe8321SBarry Smith PetscErrorCode MatLUFactorSymbolic_SuperLU(Mat A,IS r,IS c,MatFactorInfo *info,Mat *F)
33314b396bbSKris Buschelman {
334*b24902e0SBarry Smith   Mat_SuperLU    *lu = (Mat_SuperLU*)((*F)->spptr);
335*b24902e0SBarry Smith   PetscErrorCode ierr;
336*b24902e0SBarry Smith   PetscInt       m=A->rmap.n,n=A->cmap.n,indx;
337*b24902e0SBarry Smith 
338*b24902e0SBarry Smith   PetscFunctionBegin;
339*b24902e0SBarry Smith 
340*b24902e0SBarry Smith   /* Allocate spaces (notice sizes are for the transpose) */
341*b24902e0SBarry Smith   ierr = PetscMalloc(m*sizeof(PetscInt),&lu->etree);CHKERRQ(ierr);
342*b24902e0SBarry Smith   ierr = PetscMalloc(n*sizeof(PetscInt),&lu->perm_r);CHKERRQ(ierr);
343*b24902e0SBarry Smith   ierr = PetscMalloc(m*sizeof(PetscInt),&lu->perm_c);CHKERRQ(ierr);
344*b24902e0SBarry Smith   ierr = PetscMalloc(n*sizeof(PetscInt),&lu->R);CHKERRQ(ierr);
345*b24902e0SBarry Smith   ierr = PetscMalloc(m*sizeof(PetscInt),&lu->C);CHKERRQ(ierr);
346*b24902e0SBarry Smith 
347*b24902e0SBarry Smith   /* create rhs and solution x without allocate space for .Store */
348*b24902e0SBarry Smith #if defined(PETSC_USE_COMPLEX)
349*b24902e0SBarry Smith   zCreate_Dense_Matrix(&lu->B, m, 1, PETSC_NULL, m, SLU_DN, SLU_Z, SLU_GE);
350*b24902e0SBarry Smith   zCreate_Dense_Matrix(&lu->X, m, 1, PETSC_NULL, m, SLU_DN, SLU_Z, SLU_GE);
351*b24902e0SBarry Smith #else
352*b24902e0SBarry Smith   dCreate_Dense_Matrix(&lu->B, m, 1, PETSC_NULL, m, SLU_DN, SLU_D, SLU_GE);
353*b24902e0SBarry Smith   dCreate_Dense_Matrix(&lu->X, m, 1, PETSC_NULL, m, SLU_DN, SLU_D, SLU_GE);
354*b24902e0SBarry Smith #endif
355*b24902e0SBarry Smith 
356*b24902e0SBarry Smith   lu->flg            = DIFFERENT_NONZERO_PATTERN;
357*b24902e0SBarry Smith   lu->CleanUpSuperLU = PETSC_TRUE;
358*b24902e0SBarry Smith   PetscFunctionReturn(0);
359*b24902e0SBarry Smith }
360*b24902e0SBarry Smith 
361*b24902e0SBarry Smith 
362*b24902e0SBarry Smith /*MC
363*b24902e0SBarry Smith   MATSUPERLU - MATSUPERLU = "superlu" - A matrix type providing direct solvers (LU) for sequential matrices
364*b24902e0SBarry Smith   via the external package SuperLU.
365*b24902e0SBarry Smith 
366*b24902e0SBarry Smith   If SuperLU is installed (see the manual for
367*b24902e0SBarry Smith   instructions on how to declare the existence of external packages),
368*b24902e0SBarry Smith   a matrix type can be constructed which invokes SuperLU solvers.
369*b24902e0SBarry Smith   After calling MatCreate(...,A), simply call MatSetType(A,MATSUPERLU), then
370*b24902e0SBarry Smith   optionally call MatSeqAIJSetPreallocation() or MatMPIAIJSetPreallocation() DO NOT
371*b24902e0SBarry Smith   call MatCreateSeqAIJ/MPIAIJ() directly or the preallocation information will be LOST!
372*b24902e0SBarry Smith 
373*b24902e0SBarry Smith   This matrix inherits from MATSEQAIJ.  As a result, MatSeqAIJSetPreallocation() is
374*b24902e0SBarry Smith   supported for this matrix type.  One can also call MatConvert() for an inplace conversion to or from
375*b24902e0SBarry Smith   the MATSEQAIJ type AFTER the matrix values are set without data copy.
376*b24902e0SBarry Smith 
377*b24902e0SBarry Smith   Options Database Keys:
378*b24902e0SBarry Smith + -mat_type superlu - sets the matrix type to "superlu" during a call to MatSetFromOptions()
379*b24902e0SBarry Smith . -mat_superlu_ordering <0,1,2,3> - 0: natural ordering,
380*b24902e0SBarry Smith                                     1: MMD applied to A'*A,
381*b24902e0SBarry Smith                                     2: MMD applied to A'+A,
382*b24902e0SBarry Smith                                     3: COLAMD, approximate minimum degree column ordering
383*b24902e0SBarry Smith . -mat_superlu_iterrefine - have SuperLU do iterative refinement after the triangular solve
384*b24902e0SBarry Smith                           choices: NOREFINE, SINGLE, DOUBLE, EXTRA; default is NOREFINE
385*b24902e0SBarry Smith - -mat_superlu_printstat - print SuperLU statistics about the factorization
386*b24902e0SBarry Smith 
387*b24902e0SBarry Smith    Level: beginner
388*b24902e0SBarry Smith 
389*b24902e0SBarry Smith .seealso: PCLU
390*b24902e0SBarry Smith M*/
391*b24902e0SBarry Smith 
392*b24902e0SBarry Smith #undef __FUNCT__
393*b24902e0SBarry Smith #define __FUNCT__ "MatGetFactor_seqaij_superlu"
394*b24902e0SBarry Smith PetscErrorCode MatGetFactor_seqaij_superlu(Mat A,Mat *F)
395*b24902e0SBarry Smith {
39614b396bbSKris Buschelman   Mat            B;
397f0c56d0fSKris Buschelman   Mat_SuperLU    *lu;
3986849ba73SBarry Smith   PetscErrorCode ierr;
3992a4c71feSBarry Smith   PetscInt       m=A->rmap.n,n=A->cmap.n,indx;
4009ce50919SHong Zhang   PetscTruth     flg;
4015ca28756SHong Zhang   const char     *colperm[]={"NATURAL","MMD_ATA","MMD_AT_PLUS_A","COLAMD"}; /* MY_PERMC - not supported by the petsc interface yet */
4025ca28756SHong Zhang   const char     *iterrefine[]={"NOREFINE", "SINGLE", "DOUBLE", "EXTRA"};
4035ca28756SHong Zhang   const char     *rowperm[]={"NOROWPERM", "LargeDiag"}; /* MY_PERMC - not supported by the petsc interface yet */
40414b396bbSKris Buschelman 
40514b396bbSKris Buschelman   PetscFunctionBegin;
4067adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
4072a4c71feSBarry Smith   ierr = MatSetSizes(B,A->rmap.n,A->cmap.n,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
4087adad957SLisandro Dalcin   ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
409899d7b4fSKris Buschelman   ierr = MatSeqAIJSetPreallocation(B,0,PETSC_NULL);CHKERRQ(ierr);
410f0c56d0fSKris Buschelman 
411f0c56d0fSKris Buschelman   B->ops->lufactornumeric  = MatLUFactorNumeric_SuperLU;
412*b24902e0SBarry Smith   B->ops->lufactorsymbolic = MatLUFactorSymbolic_SuperLU;
413f0c56d0fSKris Buschelman   B->ops->solve            = MatSolve_SuperLU;
414c7c1fe80SHong Zhang   B->ops->solvetranspose   = MatSolveTranspose_SuperLU;
415*b24902e0SBarry Smith   B->ops->destroy          = MatDestroy_SuperLU;
41614b396bbSKris Buschelman   B->factor               = FACTOR_LU;
41794b7f48cSBarry Smith   B->assembled            = PETSC_TRUE;  /* required by -ksp_view */
41814b396bbSKris Buschelman 
419*b24902e0SBarry Smith   ierr = PetscNewLog(B,Mat_SuperLU,&lu);CHKERRQ(ierr);
4209ce50919SHong Zhang   set_default_options(&lu->options);
4218914a3f7SHong Zhang   /* equilibration causes error in solve(), thus not supported here. See dgssvx.c for possible reason. */
4228914a3f7SHong Zhang   lu->options.Equil = NO;
4239ce50919SHong Zhang   lu->options.PrintStat = NO;
4248914a3f7SHong Zhang   lu->lwork = 0;   /* allocate space internally by system malloc */
4259ce50919SHong Zhang 
4267adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)A)->comm,((PetscObject)A)->prefix,"SuperLU Options","Mat");CHKERRQ(ierr);
4278914a3f7SHong Zhang   ierr = PetscOptionsEList("-mat_superlu_colperm","ColPerm","None",colperm,4,colperm[3],&indx,&flg);CHKERRQ(ierr);
4289ce50919SHong Zhang   if (flg) {lu->options.ColPerm = (colperm_t)indx;}
4298914a3f7SHong Zhang   ierr = PetscOptionsEList("-mat_superlu_iterrefine","IterRefine","None",iterrefine,4,iterrefine[0],&indx,&flg);CHKERRQ(ierr);
4309ce50919SHong Zhang   if (flg) { lu->options.IterRefine = (IterRefine_t)indx;}
4314dc4c822SBarry Smith   ierr = PetscOptionsTruth("-mat_superlu_symmetricmode","SymmetricMode","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr);
4329ce50919SHong Zhang   if (flg) lu->options.SymmetricMode = YES;
4338914a3f7SHong Zhang   ierr = PetscOptionsReal("-mat_superlu_diagpivotthresh","DiagPivotThresh","None",lu->options.DiagPivotThresh,&lu->options.DiagPivotThresh,PETSC_NULL);CHKERRQ(ierr);
4344dc4c822SBarry Smith   ierr = PetscOptionsTruth("-mat_superlu_pivotgrowth","PivotGrowth","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr);
4359ce50919SHong Zhang   if (flg) lu->options.PivotGrowth = YES;
4364dc4c822SBarry Smith   ierr = PetscOptionsTruth("-mat_superlu_conditionnumber","ConditionNumber","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr);
4379ce50919SHong Zhang   if (flg) lu->options.ConditionNumber = YES;
4388914a3f7SHong Zhang   ierr = PetscOptionsEList("-mat_superlu_rowperm","rowperm","None",rowperm,2,rowperm[0],&indx,&flg);CHKERRQ(ierr);
4399ce50919SHong Zhang   if (flg) {lu->options.RowPerm = (rowperm_t)indx;}
4404dc4c822SBarry Smith   ierr = PetscOptionsTruth("-mat_superlu_replacetinypivot","ReplaceTinyPivot","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr);
4419ce50919SHong Zhang   if (flg) lu->options.ReplaceTinyPivot = YES;
4424dc4c822SBarry Smith   ierr = PetscOptionsTruth("-mat_superlu_printstat","PrintStat","None",PETSC_FALSE,&flg,0);CHKERRQ(ierr);
4439ce50919SHong Zhang   if (flg) lu->options.PrintStat = YES;
4448914a3f7SHong Zhang   ierr = PetscOptionsInt("-mat_superlu_lwork","size of work array in bytes used by factorization","None",lu->lwork,&lu->lwork,PETSC_NULL);CHKERRQ(ierr);
4455fe6150dSHong Zhang   if (lu->lwork > 0 ){
4465fe6150dSHong Zhang     ierr = PetscMalloc(lu->lwork,&lu->work);CHKERRQ(ierr);
4475fe6150dSHong Zhang   } else if (lu->lwork != 0 && lu->lwork != -1){
44877431f27SBarry Smith     ierr = PetscPrintf(PETSC_COMM_SELF,"   Warning: lwork %D is not supported by SUPERLU. The default lwork=0 is used.\n",lu->lwork);
4498914a3f7SHong Zhang     lu->lwork = 0;
4508914a3f7SHong Zhang   }
4519ce50919SHong Zhang   PetscOptionsEnd();
4529ce50919SHong Zhang 
45375af56d4SHong Zhang #ifdef SUPERLU2
4542ecb5974SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatCreateNull","MatCreateNull_SuperLU",
455f0c56d0fSKris Buschelman                                     (void(*)(void))MatCreateNull_SuperLU);CHKERRQ(ierr);
45675af56d4SHong Zhang #endif
457899d7b4fSKris Buschelman   *F = B;
45814b396bbSKris Buschelman   PetscFunctionReturn(0);
45914b396bbSKris Buschelman }
460