xref: /petsc/src/mat/impls/baij/mpi/baijov.c (revision c7dd2924200dc466247d74b7e6bd0d8134a658f1)
1*c7dd2924SSatish Balay /*$Id: baijov.c,v 1.58 2001/01/17 22:22:44 bsmith Exp balay $*/
2ca161407SBarry Smith 
3d5b485abSSatish Balay /*
4d5b485abSSatish Balay    Routines to compute overlapping regions of a parallel MPI matrix
5d5b485abSSatish Balay   and to find submatrices that were shared across processors.
6d5b485abSSatish Balay */
770f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h"
80a835dfdSSatish Balay #include "petscbt.h"
9d5b485abSSatish Balay 
10df36731bSBarry Smith static int MatIncreaseOverlap_MPIBAIJ_Once(Mat,int,IS *);
11df36731bSBarry Smith static int MatIncreaseOverlap_MPIBAIJ_Local(Mat,int,char **,int*,int**);
12df36731bSBarry Smith static int MatIncreaseOverlap_MPIBAIJ_Receive(Mat,int,int **,int**,int*);
13ca44d042SBarry Smith EXTERN int MatGetRow_MPIBAIJ(Mat,int,int*,int**,Scalar**);
14ca44d042SBarry Smith EXTERN int MatRestoreRow_MPIBAIJ(Mat,int,int*,int**,Scalar**);
15d5b485abSSatish Balay 
165615d1e5SSatish Balay #undef __FUNC__
17b0a32e0cSBarry Smith #define __FUNC__ "MatCompressIndicesGeneral_MPIBAIJ"
18e757655aSSatish Balay static int MatCompressIndicesGeneral_MPIBAIJ(Mat C,int imax,IS *is_in,IS *is_out)
19df36731bSBarry Smith {
20df36731bSBarry Smith   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ*)C->data;
21233c2ff6SSatish Balay   int          ierr,isz,bs = baij->bs,n,i,j,*idx,ival;
22233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
23233c2ff6SSatish Balay   PetscTable   gid1_lid1;
24233c2ff6SSatish Balay   int tt, gid1, *nidx;
25233c2ff6SSatish Balay   PetscTablePosition tpos;
26233c2ff6SSatish Balay #else
27233c2ff6SSatish Balay   int          Nbs,*nidx;
28f1af5d2fSBarry Smith   PetscBT      table;
29233c2ff6SSatish Balay #endif
30df36731bSBarry Smith 
313a40ed3dSBarry Smith   PetscFunctionBegin;
32233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
33233c2ff6SSatish Balay   ierr = PetscTableCreate(baij->mbs,&gid1_lid1);CHKERRQ(ierr);
34233c2ff6SSatish Balay #else
35df36731bSBarry Smith   Nbs  = baij->Nbs;
36b0a32e0cSBarry Smith   ierr = PetscMalloc((Nbs+1)*sizeof(int),&nidx);CHKERRQ(ierr);
376831982aSBarry Smith   ierr = PetscBTCreate(Nbs,table);CHKERRQ(ierr);
38233c2ff6SSatish Balay #endif
39df36731bSBarry Smith   for (i=0; i<imax; i++) {
40df36731bSBarry Smith     isz  = 0;
41233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
42233c2ff6SSatish Balay     ierr = PetscTableRemoveAll(gid1_lid1);CHKERRQ(ierr);
43233c2ff6SSatish Balay #else
446831982aSBarry Smith     ierr = PetscBTMemzero(Nbs,table);CHKERRQ(ierr);
45233c2ff6SSatish Balay #endif
4636f4e84dSSatish Balay     ierr = ISGetIndices(is_in[i],&idx);CHKERRQ(ierr);
47b9b97703SBarry Smith     ierr = ISGetLocalSize(is_in[i],&n);CHKERRQ(ierr);
48e757655aSSatish Balay     for (j=0; j<n ; j++) {
49df36731bSBarry Smith       ival = idx[j]/bs; /* convert the indices into block indices */
50233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
51233c2ff6SSatish Balay       ierr = PetscTableFind(gid1_lid1,ival+1,&tt);CHKERRQ(ierr);
52233c2ff6SSatish Balay       if (!tt) {
53233c2ff6SSatish Balay 	ierr = PetscTableAdd(gid1_lid1,ival+1,isz+1);CHKERRQ(ierr);
54233c2ff6SSatish Balay         isz++;
55233c2ff6SSatish Balay       }
56233c2ff6SSatish Balay #else
5729bbc08cSBarry Smith       if (ival>Nbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"index greater than mat-dim");
58f1af5d2fSBarry Smith       if(!PetscBTLookupSet(table,ival)) { nidx[isz++] = ival;}
59233c2ff6SSatish Balay #endif
60df36731bSBarry Smith     }
6136f4e84dSSatish Balay     ierr = ISRestoreIndices(is_in[i],&idx);CHKERRQ(ierr);
62233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
63b0a32e0cSBarry Smith     ierr = PetscMalloc((isz+1)*sizeof(int),&nidx);CHKERRQ(ierr);
64233c2ff6SSatish Balay     ierr = PetscTableGetHeadPosition(gid1_lid1,&tpos);CHKERRQ(ierr);
65233c2ff6SSatish Balay     j = 0;
66233c2ff6SSatish Balay     while (tpos) {
67233c2ff6SSatish Balay       ierr = PetscTableGetNext(gid1_lid1,&tpos,&gid1,&tt);CHKERRQ(ierr);
6829bbc08cSBarry Smith       if (tt-- > isz) { SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"index greater than array-dim"); }
69233c2ff6SSatish Balay       nidx[tt] = gid1 - 1;
70233c2ff6SSatish Balay       j++;
71df36731bSBarry Smith     }
7229bbc08cSBarry Smith     if (j != isz) { SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"table error: jj != isz"); }
73233c2ff6SSatish Balay     ierr = ISCreateGeneral(PETSC_COMM_SELF,isz,nidx,(is_out+i));CHKERRQ(ierr);
74233c2ff6SSatish Balay     ierr = PetscFree(nidx);CHKERRQ(ierr);
75233c2ff6SSatish Balay #else
76233c2ff6SSatish Balay     ierr = ISCreateGeneral(PETSC_COMM_SELF,isz,nidx,(is_out+i));CHKERRQ(ierr);
77233c2ff6SSatish Balay #endif
78233c2ff6SSatish Balay   }
79233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
80233c2ff6SSatish Balay   ierr = PetscTableDelete(gid1_lid1);CHKERRQ(ierr);
81233c2ff6SSatish Balay #else
826831982aSBarry Smith   ierr = PetscBTDestroy(table);CHKERRQ(ierr);
83606d414cSSatish Balay   ierr = PetscFree(nidx);CHKERRQ(ierr);
84233c2ff6SSatish Balay #endif
853a40ed3dSBarry Smith   PetscFunctionReturn(0);
86df36731bSBarry Smith }
87df36731bSBarry Smith 
885615d1e5SSatish Balay #undef __FUNC__
89b0a32e0cSBarry Smith #define __FUNC__ "MatCompressIndicesSorted_MPIBAIJ"
90e757655aSSatish Balay static int MatCompressIndicesSorted_MPIBAIJ(Mat C,int imax,IS *is_in,IS *is_out)
91e757655aSSatish Balay {
92e757655aSSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ*)C->data;
93233c2ff6SSatish Balay   int          ierr,bs=baij->bs,i,j,k,val,n,*idx,*nidx,*idx_local;
94e757655aSSatish Balay   PetscTruth   flg;
95233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
96233c2ff6SSatish Balay   int maxsz;
97233c2ff6SSatish Balay #else
98233c2ff6SSatish Balay   int Nbs=baij->Nbs;
99233c2ff6SSatish Balay #endif
1003a40ed3dSBarry Smith   PetscFunctionBegin;
101e757655aSSatish Balay   for (i=0; i<imax; i++) {
102e757655aSSatish Balay     ierr = ISSorted(is_in[i],&flg);CHKERRQ(ierr);
10329bbc08cSBarry Smith     if (!flg) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Indices are not sorted");
104e757655aSSatish Balay   }
105233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
106233c2ff6SSatish Balay   /* Now check max size */
107233c2ff6SSatish Balay   for (i=0,maxsz=0; i<imax; i++) {
108233c2ff6SSatish Balay     ierr = ISGetIndices(is_in[i],&idx);CHKERRQ(ierr);
109233c2ff6SSatish Balay     ierr = ISGetLocalSize(is_in[i],&n);CHKERRQ(ierr);
110ac355199SBarry Smith     if (n%bs !=0) SETERRQ(1,"Indices are not block ordered");
111233c2ff6SSatish Balay     n = n/bs; /* The reduced index size */
112233c2ff6SSatish Balay     if (n > maxsz) maxsz = n;
113233c2ff6SSatish Balay   }
114b0a32e0cSBarry Smith   ierr = PetscMalloc((maxsz+1)*sizeof(int),&nidx);CHKERRQ(ierr);
115233c2ff6SSatish Balay #else
116b0a32e0cSBarry Smith   ierr = PetscMalloc((Nbs+1)*sizeof(int),&nidx);CHKERRQ(ierr);
117233c2ff6SSatish Balay #endif
1183a40ed3dSBarry Smith   /* Now check if the indices are in block order */
119e757655aSSatish Balay   for (i=0; i<imax; i++) {
120e757655aSSatish Balay     ierr = ISGetIndices(is_in[i],&idx);CHKERRQ(ierr);
121b9b97703SBarry Smith     ierr = ISGetLocalSize(is_in[i],&n);CHKERRQ(ierr);
122ac355199SBarry Smith     if (n%bs !=0) SETERRQ(1,"Indices are not block ordered");
123e757655aSSatish Balay 
124e757655aSSatish Balay     n = n/bs; /* The reduced index size */
125e757655aSSatish Balay     idx_local = idx;
126e757655aSSatish Balay     for (j=0; j<n ; j++) {
127e757655aSSatish Balay       val = idx_local[0];
128ac355199SBarry Smith       if (val%bs != 0) SETERRQ(1,"Indices are not block ordered");
129e757655aSSatish Balay       for (k=0; k<bs; k++) {
130ac355199SBarry Smith         if (val+k != idx_local[k]) SETERRQ(1,"Indices are not block ordered");
131e757655aSSatish Balay       }
132e757655aSSatish Balay       nidx[j] = val/bs;
133e757655aSSatish Balay       idx_local +=bs;
134e757655aSSatish Balay     }
135e757655aSSatish Balay     ierr = ISRestoreIndices(is_in[i],&idx);CHKERRQ(ierr);
136029af93fSBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,n,nidx,(is_out+i));CHKERRQ(ierr);
137e757655aSSatish Balay   }
138606d414cSSatish Balay   ierr = PetscFree(nidx);CHKERRQ(ierr);
139233c2ff6SSatish Balay 
1403a40ed3dSBarry Smith   PetscFunctionReturn(0);
141e757655aSSatish Balay }
142e757655aSSatish Balay 
1435615d1e5SSatish Balay #undef __FUNC__
144b0a32e0cSBarry Smith #define __FUNC__ "MatExpandIndices_MPIBAIJ"
14536f4e84dSSatish Balay static int MatExpandIndices_MPIBAIJ(Mat C,int imax,IS *is_in,IS *is_out)
146df36731bSBarry Smith {
147df36731bSBarry Smith   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ*)C->data;
148233c2ff6SSatish Balay   int          ierr,bs = baij->bs,n,i,j,k,*idx,*nidx;
149233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
150233c2ff6SSatish Balay   int maxsz;
151233c2ff6SSatish Balay #else
152233c2ff6SSatish Balay   int Nbs = baij->Nbs;
153233c2ff6SSatish Balay #endif
1543a40ed3dSBarry Smith   PetscFunctionBegin;
155df36731bSBarry Smith 
156233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
157233c2ff6SSatish Balay   /* Now check max size */
158233c2ff6SSatish Balay   for (i=0,maxsz=0; i<imax; i++) {
159233c2ff6SSatish Balay     ierr = ISGetIndices(is_in[i],&idx);CHKERRQ(ierr);
160233c2ff6SSatish Balay     ierr = ISGetLocalSize(is_in[i],&n);CHKERRQ(ierr);
161233c2ff6SSatish Balay     if (n*bs > maxsz) maxsz = n*bs;
162233c2ff6SSatish Balay   }
163b0a32e0cSBarry Smith   ierr = PetscMalloc((maxsz+1)*sizeof(int),&nidx);CHKERRQ(ierr);
164233c2ff6SSatish Balay #else
165b0a32e0cSBarry Smith   ierr = PetscMalloc((Nbs*bs+1)*sizeof(int),&nidx);CHKERRQ(ierr);
166233c2ff6SSatish Balay #endif
167df36731bSBarry Smith 
168df36731bSBarry Smith   for (i=0; i<imax; i++) {
16936f4e84dSSatish Balay     ierr = ISGetIndices(is_in[i],&idx);CHKERRQ(ierr);
170b9b97703SBarry Smith     ierr = ISGetLocalSize(is_in[i],&n);CHKERRQ(ierr);
171df36731bSBarry Smith     for (j=0; j<n ; ++j){
172df36731bSBarry Smith       for (k=0; k<bs; k++)
173df36731bSBarry Smith         nidx[j*bs+k] = idx[j]*bs+k;
174df36731bSBarry Smith     }
17536f4e84dSSatish Balay     ierr = ISRestoreIndices(is_in[i],&idx);CHKERRQ(ierr);
176329f5518SBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,n*bs,nidx,is_out+i);CHKERRQ(ierr);
177df36731bSBarry Smith   }
178606d414cSSatish Balay   ierr = PetscFree(nidx);CHKERRQ(ierr);
1793a40ed3dSBarry Smith   PetscFunctionReturn(0);
180df36731bSBarry Smith }
181df36731bSBarry Smith 
182df36731bSBarry Smith 
1835615d1e5SSatish Balay #undef __FUNC__
184b0a32e0cSBarry Smith #define __FUNC__ "MatIncreaseOverlap_MPIBAIJ"
185df36731bSBarry Smith int MatIncreaseOverlap_MPIBAIJ(Mat C,int imax,IS *is,int ov)
186d5b485abSSatish Balay {
187d5b485abSSatish Balay   int i,ierr;
18836f4e84dSSatish Balay   IS  *is_new;
18936f4e84dSSatish Balay 
1903a40ed3dSBarry Smith   PetscFunctionBegin;
19182502324SSatish Balay   ierr = PetscMalloc(imax*sizeof(IS),&is_new);CHKERRQ(ierr);
192df36731bSBarry Smith   /* Convert the indices into block format */
193e757655aSSatish Balay   ierr = MatCompressIndicesGeneral_MPIBAIJ(C,imax,is,is_new);CHKERRQ(ierr);
19429bbc08cSBarry Smith   if (ov < 0){ SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative overlap specified\n");}
195d5b485abSSatish Balay   for (i=0; i<ov; ++i) {
19636f4e84dSSatish Balay     ierr = MatIncreaseOverlap_MPIBAIJ_Once(C,imax,is_new);CHKERRQ(ierr);
197d5b485abSSatish Balay   }
198ca161407SBarry Smith   for (i=0; i<imax; i++) {ierr = ISDestroy(is[i]);CHKERRQ(ierr);}
19936f4e84dSSatish Balay   ierr = MatExpandIndices_MPIBAIJ(C,imax,is_new,is);CHKERRQ(ierr);
200ca161407SBarry Smith   for (i=0; i<imax; i++) {ierr = ISDestroy(is_new[i]);CHKERRQ(ierr);}
201606d414cSSatish Balay   ierr = PetscFree(is_new);CHKERRQ(ierr);
2023a40ed3dSBarry Smith   PetscFunctionReturn(0);
203d5b485abSSatish Balay }
204d5b485abSSatish Balay 
205d5b485abSSatish Balay /*
206d5b485abSSatish Balay   Sample message format:
207d5b485abSSatish Balay   If a processor A wants processor B to process some elements corresponding
208d5b485abSSatish Balay   to index sets 1s[1], is[5]
209d5b485abSSatish Balay   mesg [0] = 2   (no of index sets in the mesg)
210d5b485abSSatish Balay   -----------
211d5b485abSSatish Balay   mesg [1] = 1 => is[1]
212d5b485abSSatish Balay   mesg [2] = sizeof(is[1]);
213d5b485abSSatish Balay   -----------
214d5b485abSSatish Balay   mesg [5] = 5  => is[5]
215d5b485abSSatish Balay   mesg [6] = sizeof(is[5]);
216d5b485abSSatish Balay   -----------
217d5b485abSSatish Balay   mesg [7]
218d5b485abSSatish Balay   mesg [n]  datas[1]
219d5b485abSSatish Balay   -----------
220d5b485abSSatish Balay   mesg[n+1]
221d5b485abSSatish Balay   mesg[m]  data(is[5])
222d5b485abSSatish Balay   -----------
223d5b485abSSatish Balay 
224d5b485abSSatish Balay   Notes:
225d5b485abSSatish Balay   nrqs - no of requests sent (or to be sent out)
226d5b485abSSatish Balay   nrqr - no of requests recieved (which have to be or which have been processed
227d5b485abSSatish Balay */
2285615d1e5SSatish Balay #undef __FUNC__
229b0a32e0cSBarry Smith #define __FUNC__ "MatIncreaseOverlap_MPIBAIJ_Once"
230df36731bSBarry Smith static int MatIncreaseOverlap_MPIBAIJ_Once(Mat C,int imax,IS *is)
231d5b485abSSatish Balay {
232df36731bSBarry Smith   Mat_MPIBAIJ  *c = (Mat_MPIBAIJ*)C->data;
233d5b485abSSatish Balay   int         **idx,*n,*w1,*w2,*w3,*w4,*rtable,**data,len,*idx_i;
234df36731bSBarry Smith   int         size,rank,Mbs,i,j,k,ierr,**rbuf,row,proc,nrqs,msz,**outdat,**ptr;
235*c7dd2924SSatish Balay   int         *ctr,*pa,*tmp,nrqr,*isz,*isz1,**xdata,**rbuf2;
236*c7dd2924SSatish Balay   int         *onodes1,*olengths1,tag1,tag2,*onodes2,*olengths2;
237f1af5d2fSBarry Smith   PetscBT     *table;
238d5b485abSSatish Balay   MPI_Comm    comm;
239d5b485abSSatish Balay   MPI_Request *s_waits1,*r_waits1,*s_waits2,*r_waits2;
240d5b485abSSatish Balay   MPI_Status  *s_status,*recv_status;
241d5b485abSSatish Balay 
2423a40ed3dSBarry Smith   PetscFunctionBegin;
243d5b485abSSatish Balay   comm   = C->comm;
244d5b485abSSatish Balay   size   = c->size;
245d5b485abSSatish Balay   rank   = c->rank;
246df36731bSBarry Smith   Mbs    = c->Mbs;
247d5b485abSSatish Balay 
248*c7dd2924SSatish Balay   ierr = PetscObjectGetNewTag((PetscObject)C,&tag1);CHKERRQ(ierr);
249*c7dd2924SSatish Balay   ierr = PetscObjectGetNewTag((PetscObject)C,&tag2);CHKERRQ(ierr);
250*c7dd2924SSatish Balay 
251df36731bSBarry Smith   len    = (imax+1)*sizeof(int*)+ (imax + Mbs)*sizeof(int);
25282502324SSatish Balay   ierr   = PetscMalloc(len,&idx);CHKERRQ(ierr);
253d5b485abSSatish Balay   n      = (int*)(idx + imax);
254d5b485abSSatish Balay   rtable = n + imax;
255d5b485abSSatish Balay 
256d5b485abSSatish Balay   for (i=0; i<imax; i++) {
257d5b485abSSatish Balay     ierr = ISGetIndices(is[i],&idx[i]);CHKERRQ(ierr);
258b9b97703SBarry Smith     ierr = ISGetLocalSize(is[i],&n[i]);CHKERRQ(ierr);
259d5b485abSSatish Balay   }
260d5b485abSSatish Balay 
261d5b485abSSatish Balay   /* Create hash table for the mapping :row -> proc*/
262d5b485abSSatish Balay   for (i=0,j=0; i<size; i++) {
263d5b485abSSatish Balay     len = c->rowners[i+1];
264d5b485abSSatish Balay     for (; j<len; j++) {
265d5b485abSSatish Balay       rtable[j] = i;
266d5b485abSSatish Balay     }
267d5b485abSSatish Balay   }
268d5b485abSSatish Balay 
269d5b485abSSatish Balay   /* evaluate communication - mesg to who,length of mesg, and buffer space
270d5b485abSSatish Balay      required. Based on this, buffers are allocated, and data copied into them*/
27182502324SSatish Balay   ierr = PetscMalloc(size*4*sizeof(int),&w1);CHKERRQ(ierr);/*  mesg size */
272d5b485abSSatish Balay   w2   = w1 + size;       /* if w2[i] marked, then a message to proc i*/
273d5b485abSSatish Balay   w3   = w2 + size;       /* no of IS that needs to be sent to proc i */
274d5b485abSSatish Balay   w4   = w3 + size;       /* temp work space used in determining w1, w2, w3 */
275549d3d68SSatish Balay   ierr = PetscMemzero(w1,size*3*sizeof(int));CHKERRQ(ierr); /* initialise work vector*/
276d5b485abSSatish Balay   for (i=0; i<imax; i++) {
277549d3d68SSatish Balay     ierr  = PetscMemzero(w4,size*sizeof(int));CHKERRQ(ierr); /* initialise work vector*/
278d5b485abSSatish Balay     idx_i = idx[i];
279d5b485abSSatish Balay     len   = n[i];
280d5b485abSSatish Balay     for (j=0; j<len; j++) {
281d5b485abSSatish Balay       row  = idx_i[j];
2826b41c64dSBarry Smith       if (row < 0) {
28329bbc08cSBarry Smith         SETERRQ(1,"Index set cannot have negative entries");
2846b41c64dSBarry Smith       }
285d5b485abSSatish Balay       proc = rtable[row];
286d5b485abSSatish Balay       w4[proc]++;
287d5b485abSSatish Balay     }
288d5b485abSSatish Balay     for (j=0; j<size; j++){
289d5b485abSSatish Balay       if (w4[j]) { w1[j] += w4[j]; w3[j]++;}
290d5b485abSSatish Balay     }
291d5b485abSSatish Balay   }
292d5b485abSSatish Balay 
293d5b485abSSatish Balay   nrqs     = 0;              /* no of outgoing messages */
294d5b485abSSatish Balay   msz      = 0;              /* total mesg length (for all proc */
295d5b485abSSatish Balay   w1[rank] = 0;              /* no mesg sent to intself */
296d5b485abSSatish Balay   w3[rank] = 0;
297d5b485abSSatish Balay   for (i=0; i<size; i++) {
298d5b485abSSatish Balay     if (w1[i])  {w2[i] = 1; nrqs++;} /* there exists a message to proc i */
299d5b485abSSatish Balay   }
300d5b485abSSatish Balay   /* pa - is list of processors to communicate with */
301b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(int),&pa);CHKERRQ(ierr);
302d5b485abSSatish Balay   for (i=0,j=0; i<size; i++) {
303d5b485abSSatish Balay     if (w1[i]) {pa[j] = i; j++;}
304d5b485abSSatish Balay   }
305d5b485abSSatish Balay 
306d5b485abSSatish Balay   /* Each message would have a header = 1 + 2*(no of IS) + data */
307d5b485abSSatish Balay   for (i=0; i<nrqs; i++) {
308d5b485abSSatish Balay     j      = pa[i];
309d5b485abSSatish Balay     w1[j] += w2[j] + 2*w3[j];
310d5b485abSSatish Balay     msz   += w1[j];
311d5b485abSSatish Balay   }
312d5b485abSSatish Balay 
313*c7dd2924SSatish Balay   /* Determine the number of messages to expect, their lengths, from from-ids */
314*c7dd2924SSatish Balay   /* ierr = PetscGatherMessageLengths(comm,nrqs,w1,w2,&nrqr,&onodes1,&olengths1);CHKERRQ(ierr);*/
315*c7dd2924SSatish Balay   ierr = PetscGatherNumberOfMessages(comm,nrqs,w2,w1,&nrqr);CHKERRQ(ierr);
316*c7dd2924SSatish Balay   ierr = PetscGatherMessageLengths(comm,nrqs,nrqr,w1,&onodes1,&olengths1);CHKERRQ(ierr);
317d5b485abSSatish Balay 
318*c7dd2924SSatish Balay   /* Now post the Irecvs corresponding to these messages */
319*c7dd2924SSatish Balay   ierr = PetscPostIrecvInt(comm,tag1,nrqr,onodes1,olengths1,&rbuf,&r_waits1);CHKERRQ(ierr);
320d5b485abSSatish Balay 
321d5b485abSSatish Balay   /* Allocate Memory for outgoing messages */
322d5b485abSSatish Balay   len    = 2*size*sizeof(int*) + (size+msz)*sizeof(int);
32382502324SSatish Balay   ierr = PetscMalloc(len,&outdat);CHKERRQ(ierr);
324d5b485abSSatish Balay   ptr    = outdat + size;     /* Pointers to the data in outgoing buffers */
325549d3d68SSatish Balay   ierr   = PetscMemzero(outdat,2*size*sizeof(int*));CHKERRQ(ierr);
326d5b485abSSatish Balay   tmp    = (int*)(outdat + 2*size);
327d5b485abSSatish Balay   ctr    = tmp + msz;
328d5b485abSSatish Balay 
329d5b485abSSatish Balay   {
330d5b485abSSatish Balay     int *iptr = tmp,ict  = 0;
331d5b485abSSatish Balay     for (i=0; i<nrqs; i++) {
332d5b485abSSatish Balay       j         = pa[i];
333d5b485abSSatish Balay       iptr     +=  ict;
334d5b485abSSatish Balay       outdat[j] = iptr;
335d5b485abSSatish Balay       ict       = w1[j];
336d5b485abSSatish Balay     }
337d5b485abSSatish Balay   }
338d5b485abSSatish Balay 
339d5b485abSSatish Balay   /* Form the outgoing messages */
340d5b485abSSatish Balay   /*plug in the headers*/
341d5b485abSSatish Balay   for (i=0; i<nrqs; i++) {
342d5b485abSSatish Balay     j            = pa[i];
343d5b485abSSatish Balay     outdat[j][0] = 0;
344549d3d68SSatish Balay     ierr = PetscMemzero(outdat[j]+1,2*w3[j]*sizeof(int));CHKERRQ(ierr);
345d5b485abSSatish Balay     ptr[j]       = outdat[j] + 2*w3[j] + 1;
346d5b485abSSatish Balay   }
347d5b485abSSatish Balay 
348d5b485abSSatish Balay   /* Memory for doing local proc's work*/
349d5b485abSSatish Balay   {
350d5b485abSSatish Balay     int  *d_p;
351d5b485abSSatish Balay     char *t_p;
352d5b485abSSatish Balay 
353f1af5d2fSBarry Smith     len  = (imax)*(sizeof(PetscBT) + sizeof(int*)+ sizeof(int)) +
3542a8f2162SSatish Balay       (Mbs)*imax*sizeof(int)  + (Mbs/BITSPERBYTE+1)*imax*sizeof(char) + 1;
35582502324SSatish Balay     ierr = PetscMalloc(len,&table);CHKERRQ(ierr);
356549d3d68SSatish Balay     ierr = PetscMemzero(table,len);CHKERRQ(ierr);
357d5b485abSSatish Balay     data = (int **)(table + imax);
358bbd702dbSSatish Balay     isz  = (int  *)(data  + imax);
359bbd702dbSSatish Balay     d_p  = (int  *)(isz   + imax);
360bbd702dbSSatish Balay     t_p  = (char *)(d_p   + Mbs*imax);
361bbd702dbSSatish Balay     for (i=0; i<imax; i++) {
3622a8f2162SSatish Balay       table[i] = t_p + (Mbs/BITSPERBYTE+1)*i;
363bbd702dbSSatish Balay       data[i]  = d_p + (Mbs)*i;
364d5b485abSSatish Balay     }
365d5b485abSSatish Balay   }
366d5b485abSSatish Balay 
367d5b485abSSatish Balay   /* Parse the IS and update local tables and the outgoing buf with the data*/
368d5b485abSSatish Balay   {
369d5b485abSSatish Balay     int     n_i,*data_i,isz_i,*outdat_j,ctr_j;
370f1af5d2fSBarry Smith     PetscBT table_i;
371d5b485abSSatish Balay 
372d5b485abSSatish Balay     for (i=0; i<imax; i++) {
373549d3d68SSatish Balay       ierr    = PetscMemzero(ctr,size*sizeof(int));CHKERRQ(ierr);
374d5b485abSSatish Balay       n_i     = n[i];
375d5b485abSSatish Balay       table_i = table[i];
376d5b485abSSatish Balay       idx_i   = idx[i];
377d5b485abSSatish Balay       data_i  = data[i];
378d5b485abSSatish Balay       isz_i   = isz[i];
379d5b485abSSatish Balay       for (j=0;  j<n_i; j++) {  /* parse the indices of each IS */
380d5b485abSSatish Balay         row  = idx_i[j];
381d5b485abSSatish Balay         proc = rtable[row];
382d5b485abSSatish Balay         if (proc != rank) { /* copy to the outgoing buffer */
383d5b485abSSatish Balay           ctr[proc]++;
384d5b485abSSatish Balay           *ptr[proc] = row;
385d5b485abSSatish Balay           ptr[proc]++;
386d5b485abSSatish Balay         }
387d5b485abSSatish Balay         else { /* Update the local table */
388f1af5d2fSBarry Smith           if (!PetscBTLookupSet(table_i,row)) { data_i[isz_i++] = row;}
389d5b485abSSatish Balay         }
390d5b485abSSatish Balay       }
391d5b485abSSatish Balay       /* Update the headers for the current IS */
392d5b485abSSatish Balay       for (j=0; j<size; j++) { /* Can Optimise this loop by using pa[] */
393d5b485abSSatish Balay         if ((ctr_j = ctr[j])) {
394d5b485abSSatish Balay           outdat_j        = outdat[j];
395d5b485abSSatish Balay           k               = ++outdat_j[0];
396d5b485abSSatish Balay           outdat_j[2*k]   = ctr_j;
397d5b485abSSatish Balay           outdat_j[2*k-1] = i;
398d5b485abSSatish Balay         }
399d5b485abSSatish Balay       }
400d5b485abSSatish Balay       isz[i] = isz_i;
401d5b485abSSatish Balay     }
402d5b485abSSatish Balay   }
403d5b485abSSatish Balay 
404d5b485abSSatish Balay   /*  Now  post the sends */
405b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Request),&s_waits1);CHKERRQ(ierr);
406d5b485abSSatish Balay   for (i=0; i<nrqs; ++i) {
407d5b485abSSatish Balay     j    = pa[i];
408*c7dd2924SSatish Balay     ierr = MPI_Isend(outdat[j],w1[j],MPI_INT,j,tag1,comm,s_waits1+i);CHKERRQ(ierr);
409d5b485abSSatish Balay   }
410d5b485abSSatish Balay 
411d5b485abSSatish Balay   /* No longer need the original indices*/
412d5b485abSSatish Balay   for (i=0; i<imax; ++i) {
413d5b485abSSatish Balay     ierr = ISRestoreIndices(is[i],idx+i);CHKERRQ(ierr);
414d5b485abSSatish Balay   }
415606d414cSSatish Balay   ierr = PetscFree(idx);CHKERRQ(ierr);
416d5b485abSSatish Balay 
417d5b485abSSatish Balay   for (i=0; i<imax; ++i) {
418d5b485abSSatish Balay     ierr = ISDestroy(is[i]);CHKERRQ(ierr);
419d5b485abSSatish Balay   }
420d5b485abSSatish Balay 
421d5b485abSSatish Balay   /* Do Local work*/
422df36731bSBarry Smith   ierr = MatIncreaseOverlap_MPIBAIJ_Local(C,imax,table,isz,data);CHKERRQ(ierr);
423d5b485abSSatish Balay 
424d5b485abSSatish Balay   /* Receive messages*/
425b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(MPI_Status),&recv_status);CHKERRQ(ierr);
426*c7dd2924SSatish Balay   ierr = MPI_Waitall(nrqr,r_waits1,recv_status);CHKERRQ(ierr);
427d5b485abSSatish Balay 
428b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Status),&s_status);CHKERRQ(ierr);
429ca161407SBarry Smith   ierr = MPI_Waitall(nrqs,s_waits1,s_status);CHKERRQ(ierr);
430d5b485abSSatish Balay 
431d5b485abSSatish Balay   /* Phase 1 sends are complete - deallocate buffers */
432606d414cSSatish Balay   ierr = PetscFree(outdat);CHKERRQ(ierr);
433606d414cSSatish Balay   ierr = PetscFree(w1);CHKERRQ(ierr);
434d5b485abSSatish Balay 
43582502324SSatish Balay   ierr = PetscMalloc((nrqr+1)*sizeof(int *),&xdata);CHKERRQ(ierr);
436b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(int),&isz1);CHKERRQ(ierr);
437df36731bSBarry Smith   ierr = MatIncreaseOverlap_MPIBAIJ_Receive(C,nrqr,rbuf,xdata,isz1);CHKERRQ(ierr);
438606d414cSSatish Balay   ierr = PetscFree(rbuf);CHKERRQ(ierr);
439d5b485abSSatish Balay 
440d5b485abSSatish Balay   /* Send the data back*/
441d5b485abSSatish Balay   /* Do a global reduction to know the buffer space req for incoming messages*/
442d5b485abSSatish Balay   {
443*c7dd2924SSatish Balay     int *rw1;
444d5b485abSSatish Balay 
445*c7dd2924SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&rw1);CHKERRQ(ierr);
446*c7dd2924SSatish Balay     ierr = PetscMemzero(rw1,size*sizeof(int));CHKERRQ(ierr);
447*c7dd2924SSatish Balay 
448d5b485abSSatish Balay     for (i=0; i<nrqr; ++i) {
449d5b485abSSatish Balay       proc      = recv_status[i].MPI_SOURCE;
450*c7dd2924SSatish Balay       if (proc != onodes1[i]) SETERRQ(1,"MPI_SOURCE mismatch");
451d5b485abSSatish Balay       rw1[proc] = isz1[i];
452d5b485abSSatish Balay     }
453d5b485abSSatish Balay 
454*c7dd2924SSatish Balay     ierr = PetscFree(onodes1);CHKERRQ(ierr);
455*c7dd2924SSatish Balay     ierr = PetscFree(olengths1);CHKERRQ(ierr);
456d5b485abSSatish Balay 
457*c7dd2924SSatish Balay     /* Determine the number of messages to expect, their lengths, from from-ids */
458*c7dd2924SSatish Balay     ierr = PetscGatherMessageLengths(comm,nrqr,nrqs,rw1,&onodes2,&olengths2);CHKERRQ(ierr);
459*c7dd2924SSatish Balay     PetscFree(rw1);
460*c7dd2924SSatish Balay   }
461*c7dd2924SSatish Balay   /* Now post the Irecvs corresponding to these messages */
462*c7dd2924SSatish Balay   ierr = PetscPostIrecvInt(comm,tag2,nrqs,onodes2,olengths2,&rbuf2,&r_waits2);CHKERRQ(ierr);
463d5b485abSSatish Balay   /* Allocate buffers*/
464d5b485abSSatish Balay 
465d5b485abSSatish Balay   /*  Now  post the sends */
466b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(MPI_Request),&s_waits2);CHKERRQ(ierr);
467d5b485abSSatish Balay   for (i=0; i<nrqr; ++i) {
468d5b485abSSatish Balay     j    = recv_status[i].MPI_SOURCE;
469*c7dd2924SSatish Balay     ierr = MPI_Isend(xdata[i],isz1[i],MPI_INT,j,tag2,comm,s_waits2+i);CHKERRQ(ierr);
470d5b485abSSatish Balay   }
471d5b485abSSatish Balay 
472d5b485abSSatish Balay   /* receive work done on other processors*/
473d5b485abSSatish Balay   {
474d5b485abSSatish Balay     int         index,is_no,ct1,max,*rbuf2_i,isz_i,*data_i,jmax;
475f1af5d2fSBarry Smith     PetscBT     table_i;
476d5b485abSSatish Balay     MPI_Status  *status2;
477d5b485abSSatish Balay 
478b0a32e0cSBarry Smith     ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Status),&status2);CHKERRQ(ierr);
479d5b485abSSatish Balay 
480d5b485abSSatish Balay     for (i=0; i<nrqs; ++i) {
481ca161407SBarry Smith       ierr = MPI_Waitany(nrqs,r_waits2,&index,status2+i);CHKERRQ(ierr);
482d5b485abSSatish Balay       /* Process the message*/
483d5b485abSSatish Balay       rbuf2_i = rbuf2[index];
484d5b485abSSatish Balay       ct1     = 2*rbuf2_i[0]+1;
485d5b485abSSatish Balay       jmax    = rbuf2[index][0];
486d5b485abSSatish Balay       for (j=1; j<=jmax; j++) {
487d5b485abSSatish Balay         max     = rbuf2_i[2*j];
488d5b485abSSatish Balay         is_no   = rbuf2_i[2*j-1];
489d5b485abSSatish Balay         isz_i   = isz[is_no];
490d5b485abSSatish Balay         data_i  = data[is_no];
491d5b485abSSatish Balay         table_i = table[is_no];
492d5b485abSSatish Balay         for (k=0; k<max; k++,ct1++) {
493d5b485abSSatish Balay           row = rbuf2_i[ct1];
494f1af5d2fSBarry Smith           if (!PetscBTLookupSet(table_i,row)) { data_i[isz_i++] = row;}
495d5b485abSSatish Balay         }
496d5b485abSSatish Balay         isz[is_no] = isz_i;
497d5b485abSSatish Balay       }
498d5b485abSSatish Balay     }
499ca161407SBarry Smith     ierr = MPI_Waitall(nrqr,s_waits2,status2);CHKERRQ(ierr);
500606d414cSSatish Balay     ierr = PetscFree(status2);CHKERRQ(ierr);
501d5b485abSSatish Balay   }
502d5b485abSSatish Balay 
503d5b485abSSatish Balay   for (i=0; i<imax; ++i) {
504029af93fSBarry Smith     ierr = ISCreateGeneral(PETSC_COMM_SELF,isz[i],data[i],is+i);CHKERRQ(ierr);
505d5b485abSSatish Balay   }
506d5b485abSSatish Balay 
507*c7dd2924SSatish Balay 
508*c7dd2924SSatish Balay   ierr = PetscFree(onodes2);CHKERRQ(ierr);
509*c7dd2924SSatish Balay   ierr = PetscFree(olengths2);CHKERRQ(ierr);
510*c7dd2924SSatish Balay 
511606d414cSSatish Balay   ierr = PetscFree(pa);CHKERRQ(ierr);
512606d414cSSatish Balay   ierr = PetscFree(rbuf2);CHKERRQ(ierr);
513606d414cSSatish Balay   ierr = PetscFree(s_waits1);CHKERRQ(ierr);
514606d414cSSatish Balay   ierr = PetscFree(r_waits1);CHKERRQ(ierr);
515606d414cSSatish Balay   ierr = PetscFree(s_waits2);CHKERRQ(ierr);
516606d414cSSatish Balay   ierr = PetscFree(r_waits2);CHKERRQ(ierr);
517606d414cSSatish Balay   ierr = PetscFree(table);CHKERRQ(ierr);
518606d414cSSatish Balay   ierr = PetscFree(s_status);CHKERRQ(ierr);
519606d414cSSatish Balay   ierr = PetscFree(recv_status);CHKERRQ(ierr);
520606d414cSSatish Balay   ierr = PetscFree(xdata[0]);CHKERRQ(ierr);
521606d414cSSatish Balay   ierr = PetscFree(xdata);CHKERRQ(ierr);
522606d414cSSatish Balay   ierr = PetscFree(isz1);CHKERRQ(ierr);
5233a40ed3dSBarry Smith   PetscFunctionReturn(0);
524d5b485abSSatish Balay }
525d5b485abSSatish Balay 
5265615d1e5SSatish Balay #undef __FUNC__
527b0a32e0cSBarry Smith #define __FUNC__ "MatIncreaseOverlap_MPIBAIJ_Local"
528d5b485abSSatish Balay /*
529df36731bSBarry Smith    MatIncreaseOverlap_MPIBAIJ_Local - Called by MatincreaseOverlap, to do
530d5b485abSSatish Balay        the work on the local processor.
531d5b485abSSatish Balay 
532d5b485abSSatish Balay      Inputs:
533df36731bSBarry Smith       C      - MAT_MPIBAIJ;
534d5b485abSSatish Balay       imax - total no of index sets processed at a time;
535df36731bSBarry Smith       table  - an array of char - size = Mbs bits.
536d5b485abSSatish Balay 
537d5b485abSSatish Balay      Output:
538d5b485abSSatish Balay       isz    - array containing the count of the solution elements correspondign
539d5b485abSSatish Balay                to each index set;
540d5b485abSSatish Balay       data   - pointer to the solutions
541d5b485abSSatish Balay */
542f1af5d2fSBarry Smith static int MatIncreaseOverlap_MPIBAIJ_Local(Mat C,int imax,PetscBT *table,int *isz,int **data)
543d5b485abSSatish Balay {
544df36731bSBarry Smith   Mat_MPIBAIJ *c = (Mat_MPIBAIJ*)C->data;
545d5b485abSSatish Balay   Mat         A = c->A,B = c->B;
546df36731bSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ*)B->data;
547df36731bSBarry Smith   int         start,end,val,max,rstart,cstart,*ai,*aj;
548d5b485abSSatish Balay   int         *bi,*bj,*garray,i,j,k,row,*data_i,isz_i;
549f1af5d2fSBarry Smith   PetscBT     table_i;
550d5b485abSSatish Balay 
5513a40ed3dSBarry Smith   PetscFunctionBegin;
552d5b485abSSatish Balay   rstart = c->rstart;
553d5b485abSSatish Balay   cstart = c->cstart;
554d5b485abSSatish Balay   ai     = a->i;
555df36731bSBarry Smith   aj     = a->j;
556d5b485abSSatish Balay   bi     = b->i;
557df36731bSBarry Smith   bj     = b->j;
558d5b485abSSatish Balay   garray = c->garray;
559d5b485abSSatish Balay 
560d5b485abSSatish Balay 
561d5b485abSSatish Balay   for (i=0; i<imax; i++) {
562d5b485abSSatish Balay     data_i  = data[i];
563d5b485abSSatish Balay     table_i = table[i];
564d5b485abSSatish Balay     isz_i   = isz[i];
565d5b485abSSatish Balay     for (j=0,max=isz[i]; j<max; j++) {
566d5b485abSSatish Balay       row   = data_i[j] - rstart;
567d5b485abSSatish Balay       start = ai[row];
568d5b485abSSatish Balay       end   = ai[row+1];
569d5b485abSSatish Balay       for (k=start; k<end; k++) { /* Amat */
570df36731bSBarry Smith         val = aj[k] + cstart;
571f1af5d2fSBarry Smith         if (!PetscBTLookupSet(table_i,val)) { data_i[isz_i++] = val;}
572d5b485abSSatish Balay       }
573d5b485abSSatish Balay       start = bi[row];
574d5b485abSSatish Balay       end   = bi[row+1];
575d5b485abSSatish Balay       for (k=start; k<end; k++) { /* Bmat */
576df36731bSBarry Smith         val = garray[bj[k]];
577f1af5d2fSBarry Smith         if (!PetscBTLookupSet(table_i,val)) { data_i[isz_i++] = val;}
578d5b485abSSatish Balay       }
579d5b485abSSatish Balay     }
580d5b485abSSatish Balay     isz[i] = isz_i;
581d5b485abSSatish Balay   }
5823a40ed3dSBarry Smith   PetscFunctionReturn(0);
583d5b485abSSatish Balay }
5845615d1e5SSatish Balay #undef __FUNC__
585b0a32e0cSBarry Smith #define __FUNC__ "MatIncreaseOverlap_MPIBAIJ_Receive"
586d5b485abSSatish Balay /*
587df36731bSBarry Smith       MatIncreaseOverlap_MPIBAIJ_Receive - Process the recieved messages,
588d5b485abSSatish Balay          and return the output
589d5b485abSSatish Balay 
590d5b485abSSatish Balay          Input:
591d5b485abSSatish Balay            C    - the matrix
592d5b485abSSatish Balay            nrqr - no of messages being processed.
593d5b485abSSatish Balay            rbuf - an array of pointers to the recieved requests
594d5b485abSSatish Balay 
595d5b485abSSatish Balay          Output:
596d5b485abSSatish Balay            xdata - array of messages to be sent back
597d5b485abSSatish Balay            isz1  - size of each message
598d5b485abSSatish Balay 
599d5b485abSSatish Balay   For better efficiency perhaps we should malloc seperately each xdata[i],
600d5b485abSSatish Balay then if a remalloc is required we need only copy the data for that one row
601d5b485abSSatish Balay rather then all previous rows as it is now where a single large chunck of
602d5b485abSSatish Balay memory is used.
603d5b485abSSatish Balay 
604d5b485abSSatish Balay */
605701b8814SBarry Smith static int MatIncreaseOverlap_MPIBAIJ_Receive(Mat C,int nrqr,int **rbuf,int **xdata,int * isz1)
606d5b485abSSatish Balay {
607df36731bSBarry Smith   Mat_MPIBAIJ *c = (Mat_MPIBAIJ*)C->data;
608d5b485abSSatish Balay   Mat         A = c->A,B = c->B;
609df36731bSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ*)B->data;
610df36731bSBarry Smith   int         rstart,cstart,*ai,*aj,*bi,*bj,*garray,i,j,k;
611d5b485abSSatish Balay   int         row,total_sz,ct,ct1,ct2,ct3,mem_estimate,oct2,l,start,end;
612df36731bSBarry Smith   int         val,max1,max2,rank,Mbs,no_malloc =0,*tmp,new_estimate,ctr;
613bbd702dbSSatish Balay   int         *rbuf_i,kmax,rbuf_0,ierr;
614f1af5d2fSBarry Smith   PetscBT     xtable;
615d5b485abSSatish Balay 
6163a40ed3dSBarry Smith   PetscFunctionBegin;
617d5b485abSSatish Balay   rank   = c->rank;
618df36731bSBarry Smith   Mbs    = c->Mbs;
619d5b485abSSatish Balay   rstart = c->rstart;
620d5b485abSSatish Balay   cstart = c->cstart;
621d5b485abSSatish Balay   ai     = a->i;
622df36731bSBarry Smith   aj     = a->j;
623d5b485abSSatish Balay   bi     = b->i;
624df36731bSBarry Smith   bj     = b->j;
625d5b485abSSatish Balay   garray = c->garray;
626d5b485abSSatish Balay 
627d5b485abSSatish Balay 
628d5b485abSSatish Balay   for (i=0,ct=0,total_sz=0; i<nrqr; ++i) {
629d5b485abSSatish Balay     rbuf_i  =  rbuf[i];
630d5b485abSSatish Balay     rbuf_0  =  rbuf_i[0];
631d5b485abSSatish Balay     ct     += rbuf_0;
632d5b485abSSatish Balay     for (j=1; j<=rbuf_0; j++) { total_sz += rbuf_i[2*j]; }
633d5b485abSSatish Balay   }
634d5b485abSSatish Balay 
635701b8814SBarry Smith   if (c->Mbs) max1 = ct*(a->nz +b->nz)/c->Mbs;
636701b8814SBarry Smith   else        max1 = 1;
637d5b485abSSatish Balay   mem_estimate = 3*((total_sz > max1 ? total_sz : max1)+1);
63882502324SSatish Balay   ierr         = PetscMalloc(mem_estimate*sizeof(int),&xdata[0]);CHKERRQ(ierr);
639d5b485abSSatish Balay   ++no_malloc;
6406831982aSBarry Smith   ierr         = PetscBTCreate(Mbs,xtable);CHKERRQ(ierr);
641549d3d68SSatish Balay   ierr         = PetscMemzero(isz1,nrqr*sizeof(int));CHKERRQ(ierr);
642d5b485abSSatish Balay 
643d5b485abSSatish Balay   ct3 = 0;
644d5b485abSSatish Balay   for (i=0; i<nrqr; i++) { /* for easch mesg from proc i */
645d5b485abSSatish Balay     rbuf_i =  rbuf[i];
646d5b485abSSatish Balay     rbuf_0 =  rbuf_i[0];
647d5b485abSSatish Balay     ct1    =  2*rbuf_0+1;
648d5b485abSSatish Balay     ct2    =  ct1;
649d5b485abSSatish Balay     ct3    += ct1;
650d5b485abSSatish Balay     for (j=1; j<=rbuf_0; j++) { /* for each IS from proc i*/
6516831982aSBarry Smith       ierr = PetscBTMemzero(Mbs,xtable);CHKERRQ(ierr);
652d5b485abSSatish Balay       oct2 = ct2;
653d5b485abSSatish Balay       kmax = rbuf_i[2*j];
654d5b485abSSatish Balay       for (k=0; k<kmax; k++,ct1++) {
655d5b485abSSatish Balay         row = rbuf_i[ct1];
656f1af5d2fSBarry Smith         if (!PetscBTLookupSet(xtable,row)) {
657d5b485abSSatish Balay           if (!(ct3 < mem_estimate)) {
658d5b485abSSatish Balay             new_estimate = (int)(1.5*mem_estimate)+1;
65982502324SSatish Balay             ierr = PetscMalloc(new_estimate * sizeof(int),&tmp);CHKERRQ(ierr);
660549d3d68SSatish Balay             ierr = PetscMemcpy(tmp,xdata[0],mem_estimate*sizeof(int));CHKERRQ(ierr);
661606d414cSSatish Balay             ierr = PetscFree(xdata[0]);CHKERRQ(ierr);
662d5b485abSSatish Balay             xdata[0]     = tmp;
663d5b485abSSatish Balay             mem_estimate = new_estimate; ++no_malloc;
664d5b485abSSatish Balay             for (ctr=1; ctr<=i; ctr++) { xdata[ctr] = xdata[ctr-1] + isz1[ctr-1];}
665d5b485abSSatish Balay           }
666d5b485abSSatish Balay           xdata[i][ct2++] = row;
667d5b485abSSatish Balay           ct3++;
668d5b485abSSatish Balay         }
669d5b485abSSatish Balay       }
670d5b485abSSatish Balay       for (k=oct2,max2=ct2; k<max2; k++)  {
671d5b485abSSatish Balay         row   = xdata[i][k] - rstart;
672d5b485abSSatish Balay         start = ai[row];
673d5b485abSSatish Balay         end   = ai[row+1];
674d5b485abSSatish Balay         for (l=start; l<end; l++) {
675df36731bSBarry Smith           val = aj[l] + cstart;
676f1af5d2fSBarry Smith           if (!PetscBTLookupSet(xtable,val)) {
677d5b485abSSatish Balay             if (!(ct3 < mem_estimate)) {
678d5b485abSSatish Balay               new_estimate = (int)(1.5*mem_estimate)+1;
67982502324SSatish Balay               ierr = PetscMalloc(new_estimate * sizeof(int),&tmp);CHKERRQ(ierr);
680549d3d68SSatish Balay               ierr = PetscMemcpy(tmp,xdata[0],mem_estimate*sizeof(int));CHKERRQ(ierr);
681606d414cSSatish Balay               ierr = PetscFree(xdata[0]);CHKERRQ(ierr);
682d5b485abSSatish Balay               xdata[0]     = tmp;
683d5b485abSSatish Balay               mem_estimate = new_estimate; ++no_malloc;
684d5b485abSSatish Balay               for (ctr=1; ctr<=i; ctr++) { xdata[ctr] = xdata[ctr-1] + isz1[ctr-1];}
685d5b485abSSatish Balay             }
686d5b485abSSatish Balay             xdata[i][ct2++] = val;
687d5b485abSSatish Balay             ct3++;
688d5b485abSSatish Balay           }
689d5b485abSSatish Balay         }
690d5b485abSSatish Balay         start = bi[row];
691d5b485abSSatish Balay         end   = bi[row+1];
692d5b485abSSatish Balay         for (l=start; l<end; l++) {
693df36731bSBarry Smith           val = garray[bj[l]];
694f1af5d2fSBarry Smith           if (!PetscBTLookupSet(xtable,val)) {
695d5b485abSSatish Balay             if (!(ct3 < mem_estimate)) {
696d5b485abSSatish Balay               new_estimate = (int)(1.5*mem_estimate)+1;
69782502324SSatish Balay               ierr = PetscMalloc(new_estimate * sizeof(int),&tmp);CHKERRQ(ierr);
698549d3d68SSatish Balay               ierr = PetscMemcpy(tmp,xdata[0],mem_estimate*sizeof(int));CHKERRQ(ierr);
699606d414cSSatish Balay               ierr = PetscFree(xdata[0]);CHKERRQ(ierr);
700d5b485abSSatish Balay               xdata[0]     = tmp;
701d5b485abSSatish Balay               mem_estimate = new_estimate; ++no_malloc;
702d5b485abSSatish Balay               for (ctr =1; ctr <=i; ctr++) { xdata[ctr] = xdata[ctr-1] + isz1[ctr-1];}
703d5b485abSSatish Balay             }
704d5b485abSSatish Balay             xdata[i][ct2++] = val;
705d5b485abSSatish Balay             ct3++;
706d5b485abSSatish Balay           }
707d5b485abSSatish Balay         }
708d5b485abSSatish Balay       }
709d5b485abSSatish Balay       /* Update the header*/
710d5b485abSSatish Balay       xdata[i][2*j]   = ct2 - oct2; /* Undo the vector isz1 and use only a var*/
711d5b485abSSatish Balay       xdata[i][2*j-1] = rbuf_i[2*j-1];
712d5b485abSSatish Balay     }
713d5b485abSSatish Balay     xdata[i][0] = rbuf_0;
714d5b485abSSatish Balay     xdata[i+1]  = xdata[i] + ct2;
715d5b485abSSatish Balay     isz1[i]     = ct2; /* size of each message */
716d5b485abSSatish Balay   }
7176831982aSBarry Smith   ierr = PetscBTDestroy(xtable);CHKERRQ(ierr);
718b0a32e0cSBarry Smith   PetscLogInfo(0,"MatIncreaseOverlap_MPIBAIJ:[%d] Allocated %d bytes, required %d, no of mallocs = %d\n",rank,mem_estimate,ct3,no_malloc);
7193a40ed3dSBarry Smith   PetscFunctionReturn(0);
720d5b485abSSatish Balay }
721d5b485abSSatish Balay 
7227b2a1423SBarry Smith static int MatGetSubMatrices_MPIBAIJ_local(Mat,int,IS *,IS *,MatReuse,Mat *);
723a2feddc5SSatish Balay 
7245615d1e5SSatish Balay #undef __FUNC__
725b0a32e0cSBarry Smith #define __FUNC__ "MatGetSubMatrices_MPIBAIJ"
726f1af5d2fSBarry Smith int MatGetSubMatrices_MPIBAIJ(Mat C,int ismax,IS *isrow,IS *iscol,MatReuse scall,Mat **submat)
727d5b485abSSatish Balay {
72836f4e84dSSatish Balay   IS          *isrow_new,*iscol_new;
729cf4f527aSSatish Balay   Mat_MPIBAIJ *c = (Mat_MPIBAIJ*)C->data;
730cf4f527aSSatish Balay   int         nmax,nstages_local,nstages,i,pos,max_no,ierr;
731a2feddc5SSatish Balay 
7323a40ed3dSBarry Smith   PetscFunctionBegin;
7333a40ed3dSBarry Smith   /* The compression and expansion should be avoided. Does'nt point
734a2feddc5SSatish Balay      out errors might change the indices hence buggey */
735a2feddc5SSatish Balay 
736b0a32e0cSBarry Smith   ierr = PetscMalloc(2*(ismax+1)*sizeof(IS),&isrow_new);CHKERRQ(ierr);
73736f4e84dSSatish Balay   iscol_new = isrow_new + ismax;
738e757655aSSatish Balay   ierr = MatCompressIndicesSorted_MPIBAIJ(C,ismax,isrow,isrow_new);CHKERRQ(ierr);
739e757655aSSatish Balay   ierr = MatCompressIndicesSorted_MPIBAIJ(C,ismax,iscol,iscol_new);CHKERRQ(ierr);
740cf4f527aSSatish Balay 
741cf4f527aSSatish Balay   /* Allocate memory to hold all the submatrices */
742cf4f527aSSatish Balay   if (scall != MAT_REUSE_MATRIX) {
74382502324SSatish Balay     ierr = PetscMalloc((ismax+1)*sizeof(Mat),submat);CHKERRQ(ierr);
744cf4f527aSSatish Balay   }
745cf4f527aSSatish Balay   /* Determine the number of stages through which submatrices are done */
746cf4f527aSSatish Balay   nmax          = 20*1000000 / (c->Nbs * sizeof(int));
747329f5518SBarry Smith   if (!nmax) nmax = 1;
748cf4f527aSSatish Balay   nstages_local = ismax/nmax + ((ismax % nmax)?1:0);
749cf4f527aSSatish Balay 
750cf4f527aSSatish Balay   /* Make sure every porcessor loops through the nstages */
751ca161407SBarry Smith   ierr = MPI_Allreduce(&nstages_local,&nstages,1,MPI_INT,MPI_MAX,C->comm);CHKERRQ(ierr);
752cf4f527aSSatish Balay   for (i=0,pos=0; i<nstages; i++) {
753cf4f527aSSatish Balay     if (pos+nmax <= ismax) max_no = nmax;
754cf4f527aSSatish Balay     else if (pos == ismax) max_no = 0;
755cf4f527aSSatish Balay     else                   max_no = ismax-pos;
756cf4f527aSSatish Balay     ierr = MatGetSubMatrices_MPIBAIJ_local(C,max_no,isrow_new+pos,iscol_new+pos,scall,*submat+pos);CHKERRQ(ierr);
757cf4f527aSSatish Balay     pos += max_no;
758cf4f527aSSatish Balay   }
75936f4e84dSSatish Balay 
76036f4e84dSSatish Balay   for (i=0; i<ismax; i++) {
761ca161407SBarry Smith     ierr = ISDestroy(isrow_new[i]);CHKERRQ(ierr);
762ca161407SBarry Smith     ierr = ISDestroy(iscol_new[i]);CHKERRQ(ierr);
76336f4e84dSSatish Balay   }
764606d414cSSatish Balay   ierr = PetscFree(isrow_new);CHKERRQ(ierr);
7653a40ed3dSBarry Smith   PetscFunctionReturn(0);
766a2feddc5SSatish Balay }
767a2feddc5SSatish Balay 
768233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
769233c2ff6SSatish Balay #undef __FUNC__
770233c2ff6SSatish Balay #define __FUNC__ "PetscGetProc"
771233c2ff6SSatish Balay int PetscGetProc(const int gid, const int numprocs, const int proc_gnode[], int *proc)
772233c2ff6SSatish Balay {
773233c2ff6SSatish Balay   int nGlobalNd = proc_gnode[numprocs];
774233c2ff6SSatish Balay   int fproc = (int) ((float)gid * (float)numprocs / (float)nGlobalNd + 0.5);
775233c2ff6SSatish Balay 
776233c2ff6SSatish Balay   PetscFunctionBegin;
77729bbc08cSBarry Smith   /* if(fproc < 0) SETERRQ(1,"fproc < 0");*/
778233c2ff6SSatish Balay   if (fproc > numprocs) fproc = numprocs;
779233c2ff6SSatish Balay   while (gid < proc_gnode[fproc] || gid >= proc_gnode[fproc+1]) {
780233c2ff6SSatish Balay     if (gid < proc_gnode[fproc]) fproc--;
781233c2ff6SSatish Balay     else                         fproc++;
782233c2ff6SSatish Balay   }
78329bbc08cSBarry Smith   /* if(fproc<0 || fproc>=numprocs) { SETERRQ(1,"fproc < 0 || fproc >= numprocs"); }*/
784233c2ff6SSatish Balay   *proc = fproc;
785233c2ff6SSatish Balay   PetscFunctionReturn(0);
786233c2ff6SSatish Balay }
787233c2ff6SSatish Balay #endif
788233c2ff6SSatish Balay 
789a2feddc5SSatish Balay /* -------------------------------------------------------------------------*/
7905615d1e5SSatish Balay #undef __FUNC__
791b0a32e0cSBarry Smith #define __FUNC__ "MatGetSubMatrices_MPIBAIJ_local"
7923eda8832SBarry Smith static int MatGetSubMatrices_MPIBAIJ_local(Mat C,int ismax,IS *isrow,IS *iscol,MatReuse scall,Mat *submats)
793a2feddc5SSatish Balay {
794df36731bSBarry Smith   Mat_MPIBAIJ *c = (Mat_MPIBAIJ*)C->data;
795cf4f527aSSatish Balay   Mat         A = c->A;
796df36731bSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b = (Mat_SeqBAIJ*)c->B->data,*mat;
797233c2ff6SSatish Balay   int         **irow,**icol,*nrow,*ncol,*w1,*w2,*w3,*w4,start,end,size;
798233c2ff6SSatish Balay   int         **sbuf1,**sbuf2,rank,i,j,k,l,ct1,ct2,ierr,**rbuf1,row,proc;
799*c7dd2924SSatish Balay   int         nrqs,msz,**ptr,index,*req_size,*ctr,*pa,*tmp,tcol,nrqr;
800233c2ff6SSatish Balay   int         **rbuf3,*req_source,**sbuf_aj,**rbuf2,max1,max2;
801233c2ff6SSatish Balay   int         **lens,is_no,ncols,*cols,mat_i,*mat_j,tmp2,jmax,*irow_i;
802233c2ff6SSatish Balay   int         len,ctr_j,*sbuf1_j,*sbuf_aj_i,*rbuf1_i,kmax,*lens_i;
803233c2ff6SSatish Balay   int         bs=c->bs,bs2=c->bs2,*a_j=a->j,*b_j=b->j,*cworkA,*cworkB;
80436f4e84dSSatish Balay   int         cstart = c->cstart,nzA,nzB,*a_i=a->i,*b_i=b->i,imark;
80534e6ae18SSatish Balay   int         *bmap = c->garray,ctmp,rstart=c->rstart,tag0,tag1,tag2,tag3;
806d5b485abSSatish Balay   MPI_Request *s_waits1,*r_waits1,*s_waits2,*r_waits2,*r_waits3;
807d5b485abSSatish Balay   MPI_Request *r_waits4,*s_waits3,*s_waits4;
808d5b485abSSatish Balay   MPI_Status  *r_status1,*r_status2,*s_status1,*s_status3,*s_status2;
809d5b485abSSatish Balay   MPI_Status  *r_status3,*r_status4,*s_status4;
810d5b485abSSatish Balay   MPI_Comm    comm;
8113eda8832SBarry Smith   MatScalar   **rbuf4,**sbuf_aa,*vals,*mat_a,*sbuf_aa_i,*vworkA,*vworkB;
8123eda8832SBarry Smith   MatScalar   *a_a=a->a,*b_a=b->a;
8130f5bd95cSBarry Smith   PetscTruth  flag;
814*c7dd2924SSatish Balay   int         *onodes1,*olengths1;
815*c7dd2924SSatish Balay 
81680d608c0SSatish Balay #if defined (PETSC_USE_CTABLE)
817233c2ff6SSatish Balay   int tt;
818233c2ff6SSatish Balay   PetscTable  *rowmaps,*colmaps,lrow1_grow1,lcol1_gcol1;
819233c2ff6SSatish Balay #else
820233c2ff6SSatish Balay   int         **cmap,*cmap_i,*rtable,*rmap_i,**rmap, Mbs = c->Mbs;
821233c2ff6SSatish Balay #endif
822d5b485abSSatish Balay 
8233a40ed3dSBarry Smith   PetscFunctionBegin;
824d5b485abSSatish Balay   comm   = C->comm;
82534e6ae18SSatish Balay   tag0   = C->tag;
826d5b485abSSatish Balay   size   = c->size;
827d5b485abSSatish Balay   rank   = c->rank;
828d5b485abSSatish Balay 
82934e6ae18SSatish Balay   /* Get some new tags to keep the communication clean */
83034e6ae18SSatish Balay   ierr = PetscObjectGetNewTag((PetscObject)C,&tag1);CHKERRQ(ierr);
83134e6ae18SSatish Balay   ierr = PetscObjectGetNewTag((PetscObject)C,&tag2);CHKERRQ(ierr);
83234e6ae18SSatish Balay   ierr = PetscObjectGetNewTag((PetscObject)C,&tag3);CHKERRQ(ierr);
83334e6ae18SSatish Balay 
834d5b485abSSatish Balay   /* Check if the col indices are sorted */
835d5b485abSSatish Balay   for (i=0; i<ismax; i++) {
836888f2ed8SSatish Balay     ierr = ISSorted(iscol[i],(PetscTruth*)&j);CHKERRQ(ierr);
83729bbc08cSBarry Smith     if (!j) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"IS is not sorted");
838d5b485abSSatish Balay   }
839d5b485abSSatish Balay 
840233c2ff6SSatish Balay   len    = (2*ismax+1)*(sizeof(int*)+ sizeof(int));
841233c2ff6SSatish Balay #if !defined (PETSC_USE_CTABLE)
842233c2ff6SSatish Balay   len    += (Mbs+1)*sizeof(int);
843233c2ff6SSatish Balay #endif
84482502324SSatish Balay   ierr = PetscMalloc(len,&irow);CHKERRQ(ierr);
845d5b485abSSatish Balay   icol = irow + ismax;
846d5b485abSSatish Balay   nrow = (int*)(icol + ismax);
847d5b485abSSatish Balay   ncol = nrow + ismax;
848233c2ff6SSatish Balay #if !defined (PETSC_USE_CTABLE)
849d5b485abSSatish Balay   rtable = ncol + ismax;
850d5b485abSSatish Balay   /* Create hash table for the mapping :row -> proc*/
851d5b485abSSatish Balay   for (i=0,j=0; i<size; i++) {
852d5b485abSSatish Balay     jmax = c->rowners[i+1];
853d5b485abSSatish Balay     for (; j<jmax; j++) {
854d5b485abSSatish Balay       rtable[j] = i;
855d5b485abSSatish Balay     }
856d5b485abSSatish Balay   }
857233c2ff6SSatish Balay #endif
858233c2ff6SSatish Balay 
859233c2ff6SSatish Balay   for (i=0; i<ismax; i++) {
860233c2ff6SSatish Balay     ierr = ISGetIndices(isrow[i],&irow[i]);CHKERRQ(ierr);
861233c2ff6SSatish Balay     ierr = ISGetIndices(iscol[i],&icol[i]);CHKERRQ(ierr);
862233c2ff6SSatish Balay     ierr = ISGetLocalSize(isrow[i],&nrow[i]);CHKERRQ(ierr);
863233c2ff6SSatish Balay     ierr = ISGetLocalSize(iscol[i],&ncol[i]);CHKERRQ(ierr);
864233c2ff6SSatish Balay   }
865d5b485abSSatish Balay 
866d5b485abSSatish Balay   /* evaluate communication - mesg to who,length of mesg,and buffer space
867d5b485abSSatish Balay      required. Based on this, buffers are allocated, and data copied into them*/
86882502324SSatish Balay   ierr = PetscMalloc(size*4*sizeof(int),&w1);CHKERRQ(ierr); /* mesg size */
869d5b485abSSatish Balay   w2   = w1 + size;      /* if w2[i] marked, then a message to proc i*/
870d5b485abSSatish Balay   w3   = w2 + size;      /* no of IS that needs to be sent to proc i */
871d5b485abSSatish Balay   w4   = w3 + size;      /* temp work space used in determining w1, w2, w3 */
872549d3d68SSatish Balay   ierr = PetscMemzero(w1,size*3*sizeof(int));CHKERRQ(ierr); /* initialise work vector*/
873d5b485abSSatish Balay   for (i=0; i<ismax; i++) {
874549d3d68SSatish Balay     ierr   = PetscMemzero(w4,size*sizeof(int));CHKERRQ(ierr); /* initialise work vector*/
875d5b485abSSatish Balay     jmax   = nrow[i];
876d5b485abSSatish Balay     irow_i = irow[i];
877d5b485abSSatish Balay     for (j=0; j<jmax; j++) {
878d5b485abSSatish Balay       row  = irow_i[j];
879233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
880233c2ff6SSatish Balay       ierr = PetscGetProc(row,size,c->rowners,&proc);CHKERRQ(ierr);
881233c2ff6SSatish Balay #else
882d5b485abSSatish Balay       proc = rtable[row];
883233c2ff6SSatish Balay #endif
884d5b485abSSatish Balay       w4[proc]++;
885d5b485abSSatish Balay     }
886d5b485abSSatish Balay     for (j=0; j<size; j++) {
887d5b485abSSatish Balay       if (w4[j]) { w1[j] += w4[j];  w3[j]++;}
888d5b485abSSatish Balay     }
889d5b485abSSatish Balay   }
890d5b485abSSatish Balay 
891d5b485abSSatish Balay   nrqs     = 0;              /* no of outgoing messages */
892e757655aSSatish Balay   msz      = 0;              /* total mesg length for all proc */
893d5b485abSSatish Balay   w1[rank] = 0;              /* no mesg sent to intself */
894d5b485abSSatish Balay   w3[rank] = 0;
895d5b485abSSatish Balay   for (i=0; i<size; i++) {
896d5b485abSSatish Balay     if (w1[i])  { w2[i] = 1; nrqs++;} /* there exists a message to proc i */
897d5b485abSSatish Balay   }
898b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(int),&pa);CHKERRQ(ierr); /*(proc -array)*/
899d5b485abSSatish Balay   for (i=0,j=0; i<size; i++) {
900d5b485abSSatish Balay     if (w1[i]) { pa[j] = i; j++; }
901d5b485abSSatish Balay   }
902d5b485abSSatish Balay 
903d5b485abSSatish Balay   /* Each message would have a header = 1 + 2*(no of IS) + data */
904d5b485abSSatish Balay   for (i=0; i<nrqs; i++) {
905d5b485abSSatish Balay     j     = pa[i];
906d5b485abSSatish Balay     w1[j] += w2[j] + 2* w3[j];
907d5b485abSSatish Balay     msz   += w1[j];
908d5b485abSSatish Balay   }
909d5b485abSSatish Balay 
910*c7dd2924SSatish Balay   /* Determine the number of messages to expect, their lengths, from from-ids */
911*c7dd2924SSatish Balay   ierr = PetscGatherNumberOfMessages(comm,nrqs,w2,w1,&nrqr);CHKERRQ(ierr);
912*c7dd2924SSatish Balay   ierr = PetscGatherMessageLengths(comm,nrqs,nrqr,w1,&onodes1,&olengths1);CHKERRQ(ierr);
913d5b485abSSatish Balay 
914*c7dd2924SSatish Balay   /* Now post the Irecvs corresponding to these messages */
915*c7dd2924SSatish Balay   ierr = PetscPostIrecvInt(comm,tag0,nrqr,onodes1,olengths1,&rbuf1,&r_waits1);CHKERRQ(ierr);
916*c7dd2924SSatish Balay 
917*c7dd2924SSatish Balay   ierr = PetscFree(onodes1);CHKERRQ(ierr);
918*c7dd2924SSatish Balay   ierr = PetscFree(olengths1);CHKERRQ(ierr);
919d5b485abSSatish Balay 
920d5b485abSSatish Balay   /* Allocate Memory for outgoing messages */
921d5b485abSSatish Balay   len  = 2*size*sizeof(int*) + 2*msz*sizeof(int) + size*sizeof(int);
92282502324SSatish Balay   ierr = PetscMalloc(len,&sbuf1);CHKERRQ(ierr);
923d5b485abSSatish Balay   ptr  = sbuf1 + size;   /* Pointers to the data in outgoing buffers */
924549d3d68SSatish Balay   ierr = PetscMemzero(sbuf1,2*size*sizeof(int*));CHKERRQ(ierr);
925d5b485abSSatish Balay   /* allocate memory for outgoing data + buf to receive the first reply */
926d5b485abSSatish Balay   tmp  = (int*)(ptr + size);
927d5b485abSSatish Balay   ctr  = tmp + 2*msz;
928d5b485abSSatish Balay 
929d5b485abSSatish Balay   {
930d5b485abSSatish Balay     int *iptr = tmp,ict = 0;
931d5b485abSSatish Balay     for (i=0; i<nrqs; i++) {
932d5b485abSSatish Balay       j         = pa[i];
933d5b485abSSatish Balay       iptr     += ict;
934d5b485abSSatish Balay       sbuf1[j]  = iptr;
935d5b485abSSatish Balay       ict       = w1[j];
936d5b485abSSatish Balay     }
937d5b485abSSatish Balay   }
938d5b485abSSatish Balay 
939d5b485abSSatish Balay   /* Form the outgoing messages */
940d5b485abSSatish Balay   /* Initialise the header space */
941d5b485abSSatish Balay   for (i=0; i<nrqs; i++) {
942d5b485abSSatish Balay     j           = pa[i];
943d5b485abSSatish Balay     sbuf1[j][0] = 0;
944549d3d68SSatish Balay     ierr        = PetscMemzero(sbuf1[j]+1,2*w3[j]*sizeof(int));CHKERRQ(ierr);
945d5b485abSSatish Balay     ptr[j]      = sbuf1[j] + 2*w3[j] + 1;
946d5b485abSSatish Balay   }
947d5b485abSSatish Balay 
948d5b485abSSatish Balay   /* Parse the isrow and copy data into outbuf */
949d5b485abSSatish Balay   for (i=0; i<ismax; i++) {
950549d3d68SSatish Balay     ierr   = PetscMemzero(ctr,size*sizeof(int));CHKERRQ(ierr);
951d5b485abSSatish Balay     irow_i = irow[i];
952d5b485abSSatish Balay     jmax   = nrow[i];
953d5b485abSSatish Balay     for (j=0; j<jmax; j++) {  /* parse the indices of each IS */
954d5b485abSSatish Balay       row  = irow_i[j];
955233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
956233c2ff6SSatish Balay       ierr = PetscGetProc(row,size,c->rowners,&proc);CHKERRQ(ierr);
957233c2ff6SSatish Balay #else
958d5b485abSSatish Balay       proc = rtable[row];
959233c2ff6SSatish Balay #endif
960d5b485abSSatish Balay       if (proc != rank) { /* copy to the outgoing buf*/
961d5b485abSSatish Balay         ctr[proc]++;
962d5b485abSSatish Balay         *ptr[proc] = row;
963d5b485abSSatish Balay         ptr[proc]++;
964d5b485abSSatish Balay       }
965d5b485abSSatish Balay     }
966d5b485abSSatish Balay     /* Update the headers for the current IS */
967d5b485abSSatish Balay     for (j=0; j<size; j++) { /* Can Optimise this loop too */
968d5b485abSSatish Balay       if ((ctr_j = ctr[j])) {
969d5b485abSSatish Balay         sbuf1_j        = sbuf1[j];
970d5b485abSSatish Balay         k              = ++sbuf1_j[0];
971d5b485abSSatish Balay         sbuf1_j[2*k]   = ctr_j;
972d5b485abSSatish Balay         sbuf1_j[2*k-1] = i;
973d5b485abSSatish Balay       }
974d5b485abSSatish Balay     }
975d5b485abSSatish Balay   }
976d5b485abSSatish Balay 
977d5b485abSSatish Balay   /*  Now  post the sends */
978b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Request),&s_waits1);CHKERRQ(ierr);
979d5b485abSSatish Balay   for (i=0; i<nrqs; ++i) {
980d5b485abSSatish Balay     j = pa[i];
981ca161407SBarry Smith     ierr = MPI_Isend(sbuf1[j],w1[j],MPI_INT,j,tag0,comm,s_waits1+i);CHKERRQ(ierr);
982d5b485abSSatish Balay   }
983d5b485abSSatish Balay 
984d5b485abSSatish Balay   /* Post Recieves to capture the buffer size */
985b0a32e0cSBarry Smith   ierr     = PetscMalloc((nrqs+1)*sizeof(MPI_Request),&r_waits2);CHKERRQ(ierr);
98682502324SSatish Balay   ierr     = PetscMalloc((nrqs+1)*sizeof(int *),&rbuf2);CHKERRQ(ierr);
987d5b485abSSatish Balay   rbuf2[0] = tmp + msz;
988d5b485abSSatish Balay   for (i=1; i<nrqs; ++i) {
989d5b485abSSatish Balay     j        = pa[i];
990d5b485abSSatish Balay     rbuf2[i] = rbuf2[i-1]+w1[pa[i-1]];
991d5b485abSSatish Balay   }
992d5b485abSSatish Balay   for (i=0; i<nrqs; ++i) {
993d5b485abSSatish Balay     j    = pa[i];
994ca161407SBarry Smith     ierr = MPI_Irecv(rbuf2[i],w1[j],MPI_INT,j,tag1,comm,r_waits2+i);CHKERRQ(ierr);
995d5b485abSSatish Balay   }
996d5b485abSSatish Balay 
997d5b485abSSatish Balay   /* Send to other procs the buf size they should allocate */
998d5b485abSSatish Balay 
999d5b485abSSatish Balay   /* Receive messages*/
1000b0a32e0cSBarry Smith   ierr       = PetscMalloc((nrqr+1)*sizeof(MPI_Request),&s_waits2);CHKERRQ(ierr);
1001b0a32e0cSBarry Smith   ierr       = PetscMalloc((nrqr+1)*sizeof(MPI_Status),&r_status1);CHKERRQ(ierr);
1002d5b485abSSatish Balay   len        = 2*nrqr*sizeof(int) + (nrqr+1)*sizeof(int*);
100382502324SSatish Balay   ierr       = PetscMalloc(len,&sbuf2);CHKERRQ(ierr);
1004d5b485abSSatish Balay   req_size   = (int*)(sbuf2 + nrqr);
1005d5b485abSSatish Balay   req_source = req_size + nrqr;
1006d5b485abSSatish Balay 
1007d5b485abSSatish Balay   {
1008df36731bSBarry Smith     Mat_SeqBAIJ *sA = (Mat_SeqBAIJ*)c->A->data,*sB = (Mat_SeqBAIJ*)c->B->data;
1009ca161407SBarry Smith     int        *sAi = sA->i,*sBi = sB->i,id,*sbuf2_i;
1010d5b485abSSatish Balay 
1011d5b485abSSatish Balay     for (i=0; i<nrqr; ++i) {
1012ca161407SBarry Smith       ierr = MPI_Waitany(nrqr,r_waits1,&index,r_status1+i);CHKERRQ(ierr);
1013d5b485abSSatish Balay       req_size[index] = 0;
1014d5b485abSSatish Balay       rbuf1_i         = rbuf1[index];
1015d5b485abSSatish Balay       start           = 2*rbuf1_i[0] + 1;
1016ca161407SBarry Smith       ierr            = MPI_Get_count(r_status1+i,MPI_INT,&end);CHKERRQ(ierr);
101782502324SSatish Balay       ierr            = PetscMalloc(end*sizeof(int),&sbuf2[index]);CHKERRQ(ierr);
1018d5b485abSSatish Balay       sbuf2_i         = sbuf2[index];
1019d5b485abSSatish Balay       for (j=start; j<end; j++) {
1020d5b485abSSatish Balay         id               = rbuf1_i[j] - rstart;
1021d5b485abSSatish Balay         ncols            = sAi[id+1] - sAi[id] + sBi[id+1] - sBi[id];
1022d5b485abSSatish Balay         sbuf2_i[j]       = ncols;
1023d5b485abSSatish Balay         req_size[index] += ncols;
1024d5b485abSSatish Balay       }
1025d5b485abSSatish Balay       req_source[index] = r_status1[i].MPI_SOURCE;
1026d5b485abSSatish Balay       /* form the header */
1027d5b485abSSatish Balay       sbuf2_i[0]   = req_size[index];
1028d5b485abSSatish Balay       for (j=1; j<start; j++) { sbuf2_i[j] = rbuf1_i[j]; }
1029ca161407SBarry Smith       ierr = MPI_Isend(sbuf2_i,end,MPI_INT,req_source[index],tag1,comm,s_waits2+i);CHKERRQ(ierr);
1030d5b485abSSatish Balay     }
1031d5b485abSSatish Balay   }
1032606d414cSSatish Balay   ierr = PetscFree(r_status1);CHKERRQ(ierr);
1033606d414cSSatish Balay   ierr = PetscFree(r_waits1);CHKERRQ(ierr);
1034d5b485abSSatish Balay 
1035d5b485abSSatish Balay   /*  recv buffer sizes */
1036d5b485abSSatish Balay   /* Receive messages*/
1037d5b485abSSatish Balay 
1038b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(int*),&rbuf3);CHKERRQ(ierr);
1039b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MatScalar*),&rbuf4);CHKERRQ(ierr);
1040b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Request),&r_waits3);CHKERRQ(ierr);
1041b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Request),&r_waits4);CHKERRQ(ierr);
1042b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Status),&r_status2);CHKERRQ(ierr);
1043d5b485abSSatish Balay 
1044d5b485abSSatish Balay   for (i=0; i<nrqs; ++i) {
1045ca161407SBarry Smith     ierr = MPI_Waitany(nrqs,r_waits2,&index,r_status2+i);CHKERRQ(ierr);
104682502324SSatish Balay     ierr = PetscMalloc(rbuf2[index][0]*sizeof(int),&rbuf3[index]);CHKERRQ(ierr);
104782502324SSatish Balay     ierr = PetscMalloc(rbuf2[index][0]*bs2*sizeof(MatScalar),&rbuf4[index]);CHKERRQ(ierr);
1048ca161407SBarry Smith     ierr = MPI_Irecv(rbuf3[index],rbuf2[index][0],MPI_INT,
1049ca161407SBarry Smith                      r_status2[i].MPI_SOURCE,tag2,comm,r_waits3+index);CHKERRQ(ierr);
10503eda8832SBarry Smith     ierr = MPI_Irecv(rbuf4[index],rbuf2[index][0]*bs2,MPIU_MATSCALAR,
1051ca161407SBarry Smith                      r_status2[i].MPI_SOURCE,tag3,comm,r_waits4+index);CHKERRQ(ierr);
1052d5b485abSSatish Balay   }
1053606d414cSSatish Balay   ierr = PetscFree(r_status2);CHKERRQ(ierr);
1054606d414cSSatish Balay   ierr = PetscFree(r_waits2);CHKERRQ(ierr);
1055d5b485abSSatish Balay 
1056d5b485abSSatish Balay   /* Wait on sends1 and sends2 */
1057b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Status),&s_status1);CHKERRQ(ierr);
1058b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(MPI_Status),&s_status2);CHKERRQ(ierr);
1059d5b485abSSatish Balay 
1060ca161407SBarry Smith   ierr = MPI_Waitall(nrqs,s_waits1,s_status1);CHKERRQ(ierr);
1061ca161407SBarry Smith   ierr = MPI_Waitall(nrqr,s_waits2,s_status2);CHKERRQ(ierr);
1062606d414cSSatish Balay   ierr = PetscFree(s_status1);CHKERRQ(ierr);
1063606d414cSSatish Balay   ierr = PetscFree(s_status2);CHKERRQ(ierr);
1064606d414cSSatish Balay   ierr = PetscFree(s_waits1);CHKERRQ(ierr);
1065606d414cSSatish Balay   ierr = PetscFree(s_waits2);CHKERRQ(ierr);
1066d5b485abSSatish Balay 
1067d5b485abSSatish Balay   /* Now allocate buffers for a->j, and send them off */
106882502324SSatish Balay   ierr = PetscMalloc((nrqr+1)*sizeof(int *),&sbuf_aj);CHKERRQ(ierr);
1069d5b485abSSatish Balay   for (i=0,j=0; i<nrqr; i++) j += req_size[i];
107082502324SSatish Balay   ierr = PetscMalloc((j+1)*sizeof(int),&sbuf_aj[0]);CHKERRQ(ierr);
1071d5b485abSSatish Balay   for (i=1; i<nrqr; i++)  sbuf_aj[i] = sbuf_aj[i-1] + req_size[i-1];
1072d5b485abSSatish Balay 
1073b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(MPI_Request),&s_waits3);CHKERRQ(ierr);
1074d5b485abSSatish Balay   {
1075d5b485abSSatish Balay      for (i=0; i<nrqr; i++) {
1076d5b485abSSatish Balay       rbuf1_i   = rbuf1[i];
1077d5b485abSSatish Balay       sbuf_aj_i = sbuf_aj[i];
1078d5b485abSSatish Balay       ct1       = 2*rbuf1_i[0] + 1;
1079d5b485abSSatish Balay       ct2       = 0;
1080d5b485abSSatish Balay       for (j=1,max1=rbuf1_i[0]; j<=max1; j++) {
1081d5b485abSSatish Balay         kmax = rbuf1[i][2*j];
1082d5b485abSSatish Balay         for (k=0; k<kmax; k++,ct1++) {
1083e8e0db45SSatish Balay           row    = rbuf1_i[ct1] - rstart;
1084d5b485abSSatish Balay           nzA    = a_i[row+1] - a_i[row];     nzB = b_i[row+1] - b_i[row];
1085d5b485abSSatish Balay           ncols  = nzA + nzB;
1086d5b485abSSatish Balay           cworkA = a_j + a_i[row]; cworkB = b_j + b_i[row];
1087d5b485abSSatish Balay 
1088d5b485abSSatish Balay           /* load the column indices for this row into cols*/
1089d5b485abSSatish Balay           cols  = sbuf_aj_i + ct2;
1090d5b485abSSatish Balay           for (l=0; l<nzB; l++) {
1091d5b485abSSatish Balay             if ((ctmp = bmap[cworkB[l]]) < cstart)  cols[l] = ctmp;
1092d5b485abSSatish Balay             else break;
1093d5b485abSSatish Balay           }
1094d5b485abSSatish Balay           imark = l;
1095d5b485abSSatish Balay           for (l=0; l<nzA; l++)   cols[imark+l] = cstart + cworkA[l];
1096d5b485abSSatish Balay           for (l=imark; l<nzB; l++) cols[nzA+l] = bmap[cworkB[l]];
1097d5b485abSSatish Balay           ct2 += ncols;
1098d5b485abSSatish Balay         }
1099d5b485abSSatish Balay       }
1100ca161407SBarry Smith       ierr = MPI_Isend(sbuf_aj_i,req_size[i],MPI_INT,req_source[i],tag2,comm,s_waits3+i);CHKERRQ(ierr);
1101d5b485abSSatish Balay     }
1102d5b485abSSatish Balay   }
1103b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Status),&r_status3);CHKERRQ(ierr);
1104b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(MPI_Status),&s_status3);CHKERRQ(ierr);
1105d5b485abSSatish Balay 
1106d5b485abSSatish Balay   /* Allocate buffers for a->a, and send them off */
110782502324SSatish Balay   ierr = PetscMalloc((nrqr+1)*sizeof(MatScalar *),&sbuf_aa);CHKERRQ(ierr);
1108d5b485abSSatish Balay   for (i=0,j=0; i<nrqr; i++) j += req_size[i];
110982502324SSatish Balay   ierr = PetscMalloc((j+1)*bs2*sizeof(MatScalar),&sbuf_aa[0]);CHKERRQ(ierr);
1110a2feddc5SSatish Balay   for (i=1; i<nrqr; i++)  sbuf_aa[i] = sbuf_aa[i-1] + req_size[i-1]*bs2;
1111d5b485abSSatish Balay 
1112b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(MPI_Request),&s_waits4);CHKERRQ(ierr);
1113d5b485abSSatish Balay   {
1114d5b485abSSatish Balay     for (i=0; i<nrqr; i++) {
1115d5b485abSSatish Balay       rbuf1_i   = rbuf1[i];
1116d5b485abSSatish Balay       sbuf_aa_i = sbuf_aa[i];
1117d5b485abSSatish Balay       ct1       = 2*rbuf1_i[0]+1;
1118d5b485abSSatish Balay       ct2       = 0;
1119d5b485abSSatish Balay       for (j=1,max1=rbuf1_i[0]; j<=max1; j++) {
1120d5b485abSSatish Balay         kmax = rbuf1_i[2*j];
1121d5b485abSSatish Balay         for (k=0; k<kmax; k++,ct1++) {
1122e8e0db45SSatish Balay           row    = rbuf1_i[ct1] - rstart;
1123d5b485abSSatish Balay           nzA    = a_i[row+1] - a_i[row];     nzB = b_i[row+1] - b_i[row];
1124d5b485abSSatish Balay           ncols  = nzA + nzB;
1125d5b485abSSatish Balay           cworkA = a_j + a_i[row];     cworkB = b_j + b_i[row];
1126a2feddc5SSatish Balay           vworkA = a_a + a_i[row]*bs2; vworkB = b_a + b_i[row]*bs2;
1127d5b485abSSatish Balay 
1128d5b485abSSatish Balay           /* load the column values for this row into vals*/
11295b83ace0SSatish Balay           vals  = sbuf_aa_i+ct2*bs2;
1130d5b485abSSatish Balay           for (l=0; l<nzB; l++) {
11313a40ed3dSBarry Smith             if ((bmap[cworkB[l]]) < cstart) {
11323eda8832SBarry Smith               ierr = PetscMemcpy(vals+l*bs2,vworkB+l*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
11333a40ed3dSBarry Smith             }
1134d5b485abSSatish Balay             else break;
1135d5b485abSSatish Balay           }
1136d5b485abSSatish Balay           imark = l;
11373a40ed3dSBarry Smith           for (l=0; l<nzA; l++) {
11383eda8832SBarry Smith             ierr = PetscMemcpy(vals+(imark+l)*bs2,vworkA+l*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
11393a40ed3dSBarry Smith           }
11403a40ed3dSBarry Smith           for (l=imark; l<nzB; l++) {
11413eda8832SBarry Smith             ierr = PetscMemcpy(vals+(nzA+l)*bs2,vworkB+l*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
11423a40ed3dSBarry Smith           }
1143d5b485abSSatish Balay           ct2 += ncols;
1144d5b485abSSatish Balay         }
1145d5b485abSSatish Balay       }
11463eda8832SBarry Smith       ierr = MPI_Isend(sbuf_aa_i,req_size[i]*bs2,MPIU_MATSCALAR,req_source[i],tag3,comm,s_waits4+i);CHKERRQ(ierr);
1147d5b485abSSatish Balay     }
1148d5b485abSSatish Balay   }
1149b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqs+1)*sizeof(MPI_Status),&r_status4);CHKERRQ(ierr);
1150b0a32e0cSBarry Smith   ierr = PetscMalloc((nrqr+1)*sizeof(MPI_Status),&s_status4);CHKERRQ(ierr);
1151606d414cSSatish Balay   ierr = PetscFree(rbuf1);CHKERRQ(ierr);
1152d5b485abSSatish Balay 
1153d5b485abSSatish Balay   /* Form the matrix */
1154d5b485abSSatish Balay   /* create col map */
1155d5b485abSSatish Balay   {
1156d5b485abSSatish Balay     int *icol_i;
1157233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1158233c2ff6SSatish Balay     /* Create row map*/
1159b0a32e0cSBarry Smith     ierr = PetscMalloc((1+ismax)*sizeof(PetscTable),&colmaps);CHKERRQ(ierr);
1160233c2ff6SSatish Balay     for (i=0; i<ismax+1; i++) {
1161233c2ff6SSatish Balay       ierr = PetscTableCreate(((i<ismax) ? ncol[i] : ncol[i-1])+1,&colmaps[i]);CHKERRQ(ierr);
1162233c2ff6SSatish Balay     }
1163233c2ff6SSatish Balay #else
1164a2feddc5SSatish Balay     len     = (1+ismax)*sizeof(int*)+ ismax*c->Nbs*sizeof(int);
116582502324SSatish Balay     ierr    = PetscMalloc(len,&cmap);CHKERRQ(ierr);
1166d5b485abSSatish Balay     cmap[0] = (int *)(cmap + ismax);
1167549d3d68SSatish Balay     ierr    = PetscMemzero(cmap[0],(1+ismax*c->Nbs)*sizeof(int));CHKERRQ(ierr);
1168a2feddc5SSatish Balay     for (i=1; i<ismax; i++) { cmap[i] = cmap[i-1] + c->Nbs; }
1169233c2ff6SSatish Balay #endif
1170d5b485abSSatish Balay     for (i=0; i<ismax; i++) {
1171d5b485abSSatish Balay       jmax   = ncol[i];
1172d5b485abSSatish Balay       icol_i = icol[i];
1173233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1174233c2ff6SSatish Balay       lcol1_gcol1 = colmaps[i];
1175233c2ff6SSatish Balay       for (j=0; j<jmax; j++) {
1176001aedefSBarry Smith 	ierr = PetscTableAdd(lcol1_gcol1,icol_i[j]+1,j+1);CHKERRQ(ierr);
1177233c2ff6SSatish Balay       }
1178233c2ff6SSatish Balay #else
1179d5b485abSSatish Balay       cmap_i = cmap[i];
1180d5b485abSSatish Balay       for (j=0; j<jmax; j++) {
1181d5b485abSSatish Balay         cmap_i[icol_i[j]] = j+1;
1182d5b485abSSatish Balay       }
1183233c2ff6SSatish Balay #endif
1184d5b485abSSatish Balay     }
1185d5b485abSSatish Balay   }
1186d5b485abSSatish Balay 
1187d5b485abSSatish Balay   /* Create lens which is required for MatCreate... */
1188d5b485abSSatish Balay   for (i=0,j=0; i<ismax; i++) { j += nrow[i]; }
1189d5b485abSSatish Balay   len     = (1+ismax)*sizeof(int*)+ j*sizeof(int);
119082502324SSatish Balay   ierr    = PetscMalloc(len,&lens);CHKERRQ(ierr);
1191d5b485abSSatish Balay   lens[0] = (int *)(lens + ismax);
1192549d3d68SSatish Balay   ierr    = PetscMemzero(lens[0],j*sizeof(int));CHKERRQ(ierr);
1193d5b485abSSatish Balay   for (i=1; i<ismax; i++) { lens[i] = lens[i-1] + nrow[i-1]; }
1194d5b485abSSatish Balay 
1195d5b485abSSatish Balay   /* Update lens from local data */
1196d5b485abSSatish Balay   for (i=0; i<ismax; i++) {
1197d5b485abSSatish Balay     jmax   = nrow[i];
1198233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1199233c2ff6SSatish Balay     lcol1_gcol1 = colmaps[i];
1200233c2ff6SSatish Balay #else
1201d5b485abSSatish Balay     cmap_i = cmap[i];
1202233c2ff6SSatish Balay #endif
1203d5b485abSSatish Balay     irow_i = irow[i];
1204d5b485abSSatish Balay     lens_i = lens[i];
1205d5b485abSSatish Balay     for (j=0; j<jmax; j++) {
1206d5b485abSSatish Balay       row  = irow_i[j];
1207233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1208233c2ff6SSatish Balay       ierr = PetscGetProc(row,size,c->rowners,&proc);CHKERRQ(ierr);
1209233c2ff6SSatish Balay #else
1210d5b485abSSatish Balay       proc = rtable[row];
1211233c2ff6SSatish Balay #endif
1212d5b485abSSatish Balay       if (proc == rank) {
121336f4e84dSSatish Balay         /* Get indices from matA and then from matB */
121436f4e84dSSatish Balay         row    = row - rstart;
121536f4e84dSSatish Balay         nzA    = a_i[row+1] - a_i[row];     nzB = b_i[row+1] - b_i[row];
121636f4e84dSSatish Balay         cworkA =  a_j + a_i[row]; cworkB = b_j + b_i[row];
1217233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1218233c2ff6SSatish Balay        for (k=0; k<nzA; k++) {
1219233c2ff6SSatish Balay 	 ierr = PetscTableFind(lcol1_gcol1,cstart+cworkA[k]+1,&tt);CHKERRQ(ierr);
1220233c2ff6SSatish Balay           if (tt) { lens_i[j]++; }
1221233c2ff6SSatish Balay         }
1222233c2ff6SSatish Balay         for (k=0; k<nzB; k++) {
1223233c2ff6SSatish Balay 	  ierr = PetscTableFind(lcol1_gcol1,bmap[cworkB[k]]+1,&tt);CHKERRQ(ierr);
1224233c2ff6SSatish Balay           if (tt) { lens_i[j]++; }
1225233c2ff6SSatish Balay         }
1226233c2ff6SSatish Balay #else
1227ca161407SBarry Smith         for (k=0; k<nzA; k++) {
122836f4e84dSSatish Balay           if (cmap_i[cstart + cworkA[k]]) { lens_i[j]++; }
1229ca161407SBarry Smith         }
1230ca161407SBarry Smith         for (k=0; k<nzB; k++) {
123136f4e84dSSatish Balay           if (cmap_i[bmap[cworkB[k]]]) { lens_i[j]++; }
1232d5b485abSSatish Balay         }
1233233c2ff6SSatish Balay #endif
1234d5b485abSSatish Balay       }
1235a2feddc5SSatish Balay     }
1236ca161407SBarry Smith   }
1237233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1238d5b485abSSatish Balay   /* Create row map*/
1239b0a32e0cSBarry Smith   ierr = PetscMalloc((1+ismax)*sizeof(PetscTable),&rowmaps);CHKERRQ(ierr);
1240233c2ff6SSatish Balay   for (i=0; i<ismax+1; i++){
1241233c2ff6SSatish Balay     ierr = PetscTableCreate((i<ismax) ? nrow[i] : nrow[i-1],&rowmaps[i]);CHKERRQ(ierr);
1242233c2ff6SSatish Balay   }
1243233c2ff6SSatish Balay #else
1244233c2ff6SSatish Balay   /* Create row map*/
1245233c2ff6SSatish Balay   len     = (1+ismax)*sizeof(int*)+ ismax*Mbs*sizeof(int);
124682502324SSatish Balay   ierr    = PetscMalloc(len,&rmap);CHKERRQ(ierr);
1247d5b485abSSatish Balay   rmap[0] = (int *)(rmap + ismax);
1248233c2ff6SSatish Balay   ierr    = PetscMemzero(rmap[0],ismax*Mbs*sizeof(int));CHKERRQ(ierr);
1249233c2ff6SSatish Balay   for (i=1; i<ismax; i++) { rmap[i] = rmap[i-1] + Mbs;}
1250233c2ff6SSatish Balay #endif
1251d5b485abSSatish Balay   for (i=0; i<ismax; i++) {
1252d5b485abSSatish Balay     irow_i = irow[i];
1253d5b485abSSatish Balay     jmax   = nrow[i];
1254233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1255233c2ff6SSatish Balay     lrow1_grow1 = rowmaps[i];
1256233c2ff6SSatish Balay     for (j=0; j<jmax; j++) {
1257233c2ff6SSatish Balay       ierr = PetscTableAdd(lrow1_grow1,irow_i[j]+1,j+1);CHKERRQ(ierr);
1258233c2ff6SSatish Balay     }
1259233c2ff6SSatish Balay #else
1260233c2ff6SSatish Balay     rmap_i = rmap[i];
1261d5b485abSSatish Balay     for (j=0; j<jmax; j++) {
1262d5b485abSSatish Balay       rmap_i[irow_i[j]] = j;
1263d5b485abSSatish Balay     }
1264233c2ff6SSatish Balay #endif
1265d5b485abSSatish Balay   }
1266d5b485abSSatish Balay 
1267d5b485abSSatish Balay   /* Update lens from offproc data */
1268d5b485abSSatish Balay   {
1269d5b485abSSatish Balay     int *rbuf2_i,*rbuf3_i,*sbuf1_i;
1270d5b485abSSatish Balay 
1271d5b485abSSatish Balay     for (tmp2=0; tmp2<nrqs; tmp2++) {
1272ca161407SBarry Smith       ierr    = MPI_Waitany(nrqs,r_waits3,&i,r_status3+tmp2);CHKERRQ(ierr);
1273d5b485abSSatish Balay       index   = pa[i];
1274d5b485abSSatish Balay       sbuf1_i = sbuf1[index];
1275d5b485abSSatish Balay       jmax    = sbuf1_i[0];
1276d5b485abSSatish Balay       ct1     = 2*jmax+1;
1277d5b485abSSatish Balay       ct2     = 0;
1278d5b485abSSatish Balay       rbuf2_i = rbuf2[i];
1279d5b485abSSatish Balay       rbuf3_i = rbuf3[i];
1280d5b485abSSatish Balay       for (j=1; j<=jmax; j++) {
1281d5b485abSSatish Balay         is_no   = sbuf1_i[2*j-1];
1282d5b485abSSatish Balay         max1    = sbuf1_i[2*j];
1283d5b485abSSatish Balay         lens_i  = lens[is_no];
1284233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1285233c2ff6SSatish Balay 	lcol1_gcol1 = colmaps[is_no];
1286233c2ff6SSatish Balay 	lrow1_grow1 = rowmaps[is_no];
1287233c2ff6SSatish Balay #else
1288d5b485abSSatish Balay         cmap_i  = cmap[is_no];
1289d5b485abSSatish Balay 	rmap_i  = rmap[is_no];
1290233c2ff6SSatish Balay #endif
1291d5b485abSSatish Balay         for (k=0; k<max1; k++,ct1++) {
1292233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1293233c2ff6SSatish Balay 	  ierr = PetscTableFind(lrow1_grow1,sbuf1_i[ct1]+1,&row);CHKERRQ(ierr);
1294233c2ff6SSatish Balay           row--;
129529bbc08cSBarry Smith           if(row < 0) { SETERRQ(1,"row not found in table"); }
1296233c2ff6SSatish Balay #else
1297d5b485abSSatish Balay           row  = rmap_i[sbuf1_i[ct1]]; /* the val in the new matrix to be */
1298233c2ff6SSatish Balay #endif
1299d5b485abSSatish Balay           max2 = rbuf2_i[ct1];
1300d5b485abSSatish Balay           for (l=0; l<max2; l++,ct2++) {
1301233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1302233c2ff6SSatish Balay 	    ierr = PetscTableFind(lcol1_gcol1,rbuf3_i[ct2]+1,&tt);CHKERRQ(ierr);
1303233c2ff6SSatish Balay 	    if (tt) {
1304233c2ff6SSatish Balay               lens_i[row]++;
1305233c2ff6SSatish Balay             }
1306233c2ff6SSatish Balay #else
1307d5b485abSSatish Balay             if (cmap_i[rbuf3_i[ct2]]) {
1308d5b485abSSatish Balay               lens_i[row]++;
1309d5b485abSSatish Balay             }
1310233c2ff6SSatish Balay #endif
1311d5b485abSSatish Balay           }
1312d5b485abSSatish Balay         }
1313d5b485abSSatish Balay       }
1314d5b485abSSatish Balay     }
1315d5b485abSSatish Balay   }
1316606d414cSSatish Balay   ierr = PetscFree(r_status3);CHKERRQ(ierr);
1317606d414cSSatish Balay   ierr = PetscFree(r_waits3);CHKERRQ(ierr);
1318ca161407SBarry Smith   ierr = MPI_Waitall(nrqr,s_waits3,s_status3);CHKERRQ(ierr);
1319606d414cSSatish Balay   ierr = PetscFree(s_status3);CHKERRQ(ierr);
1320606d414cSSatish Balay   ierr = PetscFree(s_waits3);CHKERRQ(ierr);
1321d5b485abSSatish Balay 
1322d5b485abSSatish Balay   /* Create the submatrices */
1323d5b485abSSatish Balay   if (scall == MAT_REUSE_MATRIX) {
1324d5b485abSSatish Balay     /*
1325d5b485abSSatish Balay         Assumes new rows are same length as the old rows, hence bug!
1326d5b485abSSatish Balay     */
1327d5b485abSSatish Balay     for (i=0; i<ismax; i++) {
1328df36731bSBarry Smith       mat = (Mat_SeqBAIJ *)(submats[i]->data);
132936f4e84dSSatish Balay       if ((mat->mbs != nrow[i]) || (mat->nbs != ncol[i] || mat->bs != bs)) {
133029bbc08cSBarry Smith         SETERRQ(PETSC_ERR_ARG_SIZ,"Cannot reuse matrix. wrong size");
1331d5b485abSSatish Balay       }
13320f5bd95cSBarry Smith       ierr = PetscMemcmp(mat->ilen,lens[i],mat->mbs *sizeof(int),&flag);CHKERRQ(ierr);
13330f5bd95cSBarry Smith       if (flag == PETSC_FALSE) {
133429bbc08cSBarry Smith         SETERRQ(PETSC_ERR_ARG_INCOMP,"Cannot reuse matrix. wrong no of nonzeros");
1335d5b485abSSatish Balay       }
1336d5b485abSSatish Balay       /* Initial matrix as if empty */
1337549d3d68SSatish Balay       ierr = PetscMemzero(mat->ilen,mat->mbs*sizeof(int));CHKERRQ(ierr);
1338ce60de66SLois Curfman McInnes       submats[i]->factor = C->factor;
1339d5b485abSSatish Balay     }
1340ca161407SBarry Smith   } else {
1341d5b485abSSatish Balay     for (i=0; i<ismax; i++) {
1342ca161407SBarry Smith       ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,a->bs,nrow[i]*bs,ncol[i]*bs,0,lens[i],submats+i);CHKERRQ(ierr);
1343d5b485abSSatish Balay     }
1344d5b485abSSatish Balay   }
1345d5b485abSSatish Balay 
1346d5b485abSSatish Balay   /* Assemble the matrices */
1347d5b485abSSatish Balay   /* First assemble the local rows */
1348d5b485abSSatish Balay   {
134936f4e84dSSatish Balay     int       ilen_row,*imat_ilen,*imat_j,*imat_i;
13503eda8832SBarry Smith     MatScalar *imat_a;
1351d5b485abSSatish Balay 
1352d5b485abSSatish Balay     for (i=0; i<ismax; i++) {
1353df36731bSBarry Smith       mat       = (Mat_SeqBAIJ*)submats[i]->data;
1354d5b485abSSatish Balay       imat_ilen = mat->ilen;
1355d5b485abSSatish Balay       imat_j    = mat->j;
1356d5b485abSSatish Balay       imat_i    = mat->i;
1357d5b485abSSatish Balay       imat_a    = mat->a;
1358233c2ff6SSatish Balay 
1359233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1360233c2ff6SSatish Balay       lcol1_gcol1 = colmaps[i];
1361233c2ff6SSatish Balay       lrow1_grow1 = rowmaps[i];
1362233c2ff6SSatish Balay #else
1363d5b485abSSatish Balay       cmap_i    = cmap[i];
1364d5b485abSSatish Balay       rmap_i    = rmap[i];
1365233c2ff6SSatish Balay #endif
1366d5b485abSSatish Balay       irow_i    = irow[i];
1367d5b485abSSatish Balay       jmax      = nrow[i];
1368d5b485abSSatish Balay       for (j=0; j<jmax; j++) {
1369d5b485abSSatish Balay         row      = irow_i[j];
1370233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1371233c2ff6SSatish Balay 	ierr = PetscGetProc(row,size,c->rowners,&proc);CHKERRQ(ierr);
1372233c2ff6SSatish Balay #else
1373d5b485abSSatish Balay 	proc = rtable[row];
1374233c2ff6SSatish Balay #endif
1375d5b485abSSatish Balay         if (proc == rank) {
137636f4e84dSSatish Balay           row      = row - rstart;
137736f4e84dSSatish Balay           nzA      = a_i[row+1] - a_i[row];
137836f4e84dSSatish Balay           nzB      = b_i[row+1] - b_i[row];
137936f4e84dSSatish Balay           cworkA   = a_j + a_i[row];
138036f4e84dSSatish Balay           cworkB   = b_j + b_i[row];
138136f4e84dSSatish Balay           vworkA   = a_a + a_i[row]*bs2;
138236f4e84dSSatish Balay           vworkB   = b_a + b_i[row]*bs2;
1383233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1384233c2ff6SSatish Balay 	  ierr = PetscTableFind(lrow1_grow1,row+rstart+1,&row);CHKERRQ(ierr);
1385233c2ff6SSatish Balay           row--;
138629bbc08cSBarry Smith           if (row < 0) { SETERRQ(1,"row not found in table"); }
1387233c2ff6SSatish Balay #else
138836f4e84dSSatish Balay           row      = rmap_i[row + rstart];
1389233c2ff6SSatish Balay #endif
1390df36731bSBarry Smith           mat_i    = imat_i[row];
139136f4e84dSSatish Balay           mat_a    = imat_a + mat_i*bs2;
1392d5b485abSSatish Balay           mat_j    = imat_j + mat_i;
139336f4e84dSSatish Balay           ilen_row = imat_ilen[row];
139436f4e84dSSatish Balay 
139536f4e84dSSatish Balay           /* load the column indices for this row into cols*/
139636f4e84dSSatish Balay           for (l=0; l<nzB; l++) {
139736f4e84dSSatish Balay 	    if ((ctmp = bmap[cworkB[l]]) < cstart) {
1398233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1399233c2ff6SSatish Balay 	      ierr = PetscTableFind(lcol1_gcol1,ctmp+1,&tcol);CHKERRQ(ierr);
1400233c2ff6SSatish Balay 	      if (tcol) {
1401233c2ff6SSatish Balay #else
140236f4e84dSSatish Balay               if ((tcol = cmap_i[ctmp])) {
1403233c2ff6SSatish Balay #endif
1404df36731bSBarry Smith                 *mat_j++ = tcol - 1;
14053eda8832SBarry Smith                 ierr     = PetscMemcpy(mat_a,vworkB+l*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1406549d3d68SSatish Balay                 mat_a   += bs2;
1407d5b485abSSatish Balay                 ilen_row++;
1408d5b485abSSatish Balay               }
1409ca161407SBarry Smith             } else break;
141036f4e84dSSatish Balay           }
141136f4e84dSSatish Balay           imark = l;
141236f4e84dSSatish Balay           for (l=0; l<nzA; l++) {
1413233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1414233c2ff6SSatish Balay 	    ierr = PetscTableFind(lcol1_gcol1,cstart+cworkA[l]+1,&tcol);CHKERRQ(ierr);
1415233c2ff6SSatish Balay 	    if (tcol) {
1416233c2ff6SSatish Balay #else
141736f4e84dSSatish Balay 	    if ((tcol = cmap_i[cstart + cworkA[l]])) {
1418233c2ff6SSatish Balay #endif
141936f4e84dSSatish Balay               *mat_j++ = tcol - 1;
14203eda8832SBarry Smith               ierr     = PetscMemcpy(mat_a,vworkA+l*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1421549d3d68SSatish Balay               mat_a   += bs2;
142236f4e84dSSatish Balay               ilen_row++;
142336f4e84dSSatish Balay             }
142436f4e84dSSatish Balay           }
142536f4e84dSSatish Balay           for (l=imark; l<nzB; l++) {
1426233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1427233c2ff6SSatish Balay 	    ierr = PetscTableFind(lcol1_gcol1,bmap[cworkB[l]]+1,&tcol);CHKERRQ(ierr);
1428233c2ff6SSatish Balay 	    if (tcol) {
1429233c2ff6SSatish Balay #else
143036f4e84dSSatish Balay             if ((tcol = cmap_i[bmap[cworkB[l]]])) {
1431233c2ff6SSatish Balay #endif
143236f4e84dSSatish Balay               *mat_j++ = tcol - 1;
14333eda8832SBarry Smith               ierr     = PetscMemcpy(mat_a,vworkB+l*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1434549d3d68SSatish Balay               mat_a   += bs2;
143536f4e84dSSatish Balay               ilen_row++;
143636f4e84dSSatish Balay             }
143736f4e84dSSatish Balay           }
1438d5b485abSSatish Balay           imat_ilen[row] = ilen_row;
1439d5b485abSSatish Balay         }
1440d5b485abSSatish Balay       }
144136f4e84dSSatish Balay 
1442d5b485abSSatish Balay     }
1443d5b485abSSatish Balay   }
1444d5b485abSSatish Balay 
1445d5b485abSSatish Balay   /*   Now assemble the off proc rows*/
1446d5b485abSSatish Balay   {
1447d5b485abSSatish Balay     int       *sbuf1_i,*rbuf2_i,*rbuf3_i,*imat_ilen,ilen;
1448d5b485abSSatish Balay     int       *imat_j,*imat_i;
14493eda8832SBarry Smith     MatScalar *imat_a,*rbuf4_i;
1450d5b485abSSatish Balay 
1451d5b485abSSatish Balay     for (tmp2=0; tmp2<nrqs; tmp2++) {
1452ca161407SBarry Smith       ierr    = MPI_Waitany(nrqs,r_waits4,&i,r_status4+tmp2);CHKERRQ(ierr);
1453d5b485abSSatish Balay       index   = pa[i];
1454d5b485abSSatish Balay       sbuf1_i = sbuf1[index];
1455d5b485abSSatish Balay       jmax    = sbuf1_i[0];
1456d5b485abSSatish Balay       ct1     = 2*jmax + 1;
1457d5b485abSSatish Balay       ct2     = 0;
1458d5b485abSSatish Balay       rbuf2_i = rbuf2[i];
1459d5b485abSSatish Balay       rbuf3_i = rbuf3[i];
1460d5b485abSSatish Balay       rbuf4_i = rbuf4[i];
1461d5b485abSSatish Balay       for (j=1; j<=jmax; j++) {
1462d5b485abSSatish Balay         is_no     = sbuf1_i[2*j-1];
1463233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1464233c2ff6SSatish Balay 	lrow1_grow1 = rowmaps[is_no];
1465233c2ff6SSatish Balay 	lcol1_gcol1 = colmaps[is_no];
1466233c2ff6SSatish Balay #else
1467d5b485abSSatish Balay         rmap_i    = rmap[is_no];
1468d5b485abSSatish Balay         cmap_i    = cmap[is_no];
1469233c2ff6SSatish Balay #endif
1470df36731bSBarry Smith         mat       = (Mat_SeqBAIJ*)submats[is_no]->data;
1471d5b485abSSatish Balay         imat_ilen = mat->ilen;
1472d5b485abSSatish Balay         imat_j    = mat->j;
1473d5b485abSSatish Balay         imat_i    = mat->i;
1474d5b485abSSatish Balay         imat_a    = mat->a;
1475d5b485abSSatish Balay         max1      = sbuf1_i[2*j];
1476d5b485abSSatish Balay         for (k=0; k<max1; k++,ct1++) {
1477d5b485abSSatish Balay           row   = sbuf1_i[ct1];
1478233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1479233c2ff6SSatish Balay 	  ierr = PetscTableFind(lrow1_grow1,row+1,&row);CHKERRQ(ierr);
1480233c2ff6SSatish Balay           row--;
148129bbc08cSBarry Smith           if(row < 0) { SETERRQ(1,"row not found in table"); }
1482233c2ff6SSatish Balay #else
1483d5b485abSSatish Balay           row   = rmap_i[row];
1484233c2ff6SSatish Balay #endif
1485d5b485abSSatish Balay           ilen  = imat_ilen[row];
1486df36731bSBarry Smith           mat_i = imat_i[row];
148736f4e84dSSatish Balay           mat_a = imat_a + mat_i*bs2;
1488d5b485abSSatish Balay           mat_j = imat_j + mat_i;
1489d5b485abSSatish Balay           max2 = rbuf2_i[ct1];
1490d5b485abSSatish Balay           for (l=0; l<max2; l++,ct2++) {
1491233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1492233c2ff6SSatish Balay 	    ierr = PetscTableFind(lcol1_gcol1,rbuf3_i[ct2]+1,&tcol);CHKERRQ(ierr);
1493233c2ff6SSatish Balay 	    if (tcol) {
1494233c2ff6SSatish Balay #else
1495d5b485abSSatish Balay 	    if ((tcol = cmap_i[rbuf3_i[ct2]])) {
1496233c2ff6SSatish Balay #endif
1497df36731bSBarry Smith               *mat_j++    = tcol - 1;
149836f4e84dSSatish Balay               /* *mat_a++= rbuf4_i[ct2]; */
14993eda8832SBarry Smith               ierr        = PetscMemcpy(mat_a,rbuf4_i+ct2*bs2,bs2*sizeof(MatScalar));CHKERRQ(ierr);
1500549d3d68SSatish Balay               mat_a      += bs2;
1501d5b485abSSatish Balay               ilen++;
1502d5b485abSSatish Balay             }
1503d5b485abSSatish Balay           }
1504d5b485abSSatish Balay           imat_ilen[row] = ilen;
1505d5b485abSSatish Balay         }
1506d5b485abSSatish Balay       }
1507d5b485abSSatish Balay     }
1508d5b485abSSatish Balay   }
1509606d414cSSatish Balay   ierr = PetscFree(r_status4);CHKERRQ(ierr);
1510606d414cSSatish Balay   ierr = PetscFree(r_waits4);CHKERRQ(ierr);
1511ca161407SBarry Smith   ierr = MPI_Waitall(nrqr,s_waits4,s_status4);CHKERRQ(ierr);
1512606d414cSSatish Balay   ierr = PetscFree(s_waits4);CHKERRQ(ierr);
1513606d414cSSatish Balay   ierr = PetscFree(s_status4);CHKERRQ(ierr);
1514d5b485abSSatish Balay 
1515d5b485abSSatish Balay   /* Restore the indices */
1516d5b485abSSatish Balay   for (i=0; i<ismax; i++) {
1517d5b485abSSatish Balay     ierr = ISRestoreIndices(isrow[i],irow+i);CHKERRQ(ierr);
1518d5b485abSSatish Balay     ierr = ISRestoreIndices(iscol[i],icol+i);CHKERRQ(ierr);
1519d5b485abSSatish Balay   }
1520d5b485abSSatish Balay 
1521d5b485abSSatish Balay   /* Destroy allocated memory */
1522606d414cSSatish Balay   ierr = PetscFree(irow);CHKERRQ(ierr);
1523606d414cSSatish Balay   ierr = PetscFree(w1);CHKERRQ(ierr);
1524606d414cSSatish Balay   ierr = PetscFree(pa);CHKERRQ(ierr);
1525d5b485abSSatish Balay 
1526606d414cSSatish Balay   ierr = PetscFree(sbuf1);CHKERRQ(ierr);
1527606d414cSSatish Balay   ierr = PetscFree(rbuf2);CHKERRQ(ierr);
1528d5b485abSSatish Balay   for (i=0; i<nrqr; ++i) {
1529606d414cSSatish Balay     ierr = PetscFree(sbuf2[i]);CHKERRQ(ierr);
1530d5b485abSSatish Balay   }
1531d5b485abSSatish Balay   for (i=0; i<nrqs; ++i) {
1532606d414cSSatish Balay     ierr = PetscFree(rbuf3[i]);CHKERRQ(ierr);
1533606d414cSSatish Balay     ierr = PetscFree(rbuf4[i]);CHKERRQ(ierr);
1534d5b485abSSatish Balay   }
1535d5b485abSSatish Balay 
1536606d414cSSatish Balay   ierr = PetscFree(sbuf2);CHKERRQ(ierr);
1537606d414cSSatish Balay   ierr = PetscFree(rbuf3);CHKERRQ(ierr);
1538606d414cSSatish Balay   ierr = PetscFree(rbuf4);CHKERRQ(ierr);
1539606d414cSSatish Balay   ierr = PetscFree(sbuf_aj[0]);CHKERRQ(ierr);
1540606d414cSSatish Balay   ierr = PetscFree(sbuf_aj);CHKERRQ(ierr);
1541606d414cSSatish Balay   ierr = PetscFree(sbuf_aa[0]);CHKERRQ(ierr);
1542606d414cSSatish Balay   ierr = PetscFree(sbuf_aa);CHKERRQ(ierr);
1543d5b485abSSatish Balay 
1544233c2ff6SSatish Balay #if defined (PETSC_USE_CTABLE)
1545233c2ff6SSatish Balay   for (i=0; i<ismax+1; i++){
1546233c2ff6SSatish Balay     ierr = PetscTableDelete(rowmaps[i]);CHKERRQ(ierr);
1547233c2ff6SSatish Balay     ierr = PetscTableDelete(colmaps[i]);CHKERRQ(ierr);
1548233c2ff6SSatish Balay   }
1549233c2ff6SSatish Balay   ierr = PetscFree(colmaps);CHKERRQ(ierr);
1550233c2ff6SSatish Balay   ierr = PetscFree(rowmaps);CHKERRQ(ierr);
1551233c2ff6SSatish Balay   /* Mark Adams */
1552233c2ff6SSatish Balay #else
1553606d414cSSatish Balay   ierr = PetscFree(rmap);CHKERRQ(ierr);
1554233c2ff6SSatish Balay   ierr = PetscFree(cmap);CHKERRQ(ierr);
1555233c2ff6SSatish Balay #endif
1556606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1557d5b485abSSatish Balay 
1558d5b485abSSatish Balay   for (i=0; i<ismax; i++) {
155936f4e84dSSatish Balay     ierr = MatAssemblyBegin(submats[i],MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
156036f4e84dSSatish Balay     ierr = MatAssemblyEnd(submats[i],MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1561d5b485abSSatish Balay   }
156234e6ae18SSatish Balay 
15633a40ed3dSBarry Smith   PetscFunctionReturn(0);
1564d5b485abSSatish Balay }
1565ca161407SBarry Smith 
1566