xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 064f82089b814f8f0f4c182471344be325811641)
1bba1ac68SSatish Balay /*$Id: mpibaij.c,v 1.234 2001/09/25 22:56:49 balay Exp $*/
279bdfe76SSatish Balay 
3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
4c16cb8f2SBarry Smith #include "src/vec/vecimpl.h"
579bdfe76SSatish Balay 
6ca44d042SBarry Smith EXTERN int MatSetUpMultiply_MPIBAIJ(Mat);
7ca44d042SBarry Smith EXTERN int DisAssemble_MPIBAIJ(Mat);
8ca44d042SBarry Smith EXTERN int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int);
9ca44d042SBarry Smith EXTERN int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **);
1087828ca2SBarry Smith EXTERN int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,PetscScalar *);
1187828ca2SBarry Smith EXTERN int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,PetscScalar *,InsertMode);
1287828ca2SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode);
1387828ca2SBarry Smith EXTERN int MatGetRow_SeqBAIJ(Mat,int,int*,int**,PetscScalar**);
1487828ca2SBarry Smith EXTERN int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,PetscScalar**);
15ca44d042SBarry Smith EXTERN int MatPrintHelp_SeqBAIJ(Mat);
1687828ca2SBarry Smith EXTERN int MatZeroRows_SeqBAIJ(Mat,IS,PetscScalar*);
1793fea6afSBarry Smith 
1893fea6afSBarry Smith /*  UGLY, ugly, ugly
1987828ca2SBarry Smith    When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does
2093fea6afSBarry Smith    not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and
2193fea6afSBarry Smith    inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ()
2293fea6afSBarry Smith    converts the entries into single precision and then calls ..._MatScalar() to put them
2393fea6afSBarry Smith    into the single precision data structures.
2493fea6afSBarry Smith */
2593fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
26ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
27ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
28ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
29ca44d042SBarry Smith EXTERN int MatSetValues_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
30ca44d042SBarry Smith EXTERN int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,int,int*,int,int*,MatScalar*,InsertMode);
3193fea6afSBarry Smith #else
326fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar      MatSetValuesBlocked_SeqBAIJ
3393fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar             MatSetValues_MPIBAIJ
3493fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar      MatSetValuesBlocked_MPIBAIJ
356fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar          MatSetValues_MPIBAIJ_HT
366fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar   MatSetValuesBlocked_MPIBAIJ_HT
3793fea6afSBarry Smith #endif
383b2fbd54SBarry Smith 
394a2ae208SSatish Balay #undef __FUNCT__
404a2ae208SSatish Balay #define __FUNCT__ "MatGetRowMax_MPIBAIJ"
417843d17aSBarry Smith int MatGetRowMax_MPIBAIJ(Mat A,Vec v)
427843d17aSBarry Smith {
437843d17aSBarry Smith   Mat_MPIBAIJ  *a = (Mat_MPIBAIJ*)A->data;
447843d17aSBarry Smith   int          ierr,i;
4587828ca2SBarry Smith   PetscScalar  *va,*vb;
467843d17aSBarry Smith   Vec          vtmp;
477843d17aSBarry Smith 
487843d17aSBarry Smith   PetscFunctionBegin;
497843d17aSBarry Smith 
507843d17aSBarry Smith   ierr = MatGetRowMax(a->A,v);CHKERRQ(ierr);
51273d9f13SBarry Smith   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
527843d17aSBarry Smith 
53ac355199SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->m,&vtmp);CHKERRQ(ierr);
547843d17aSBarry Smith   ierr = MatGetRowMax(a->B,vtmp);CHKERRQ(ierr);
55273d9f13SBarry Smith   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
567843d17aSBarry Smith 
57273d9f13SBarry Smith   for (i=0; i<A->m; i++){
58273d9f13SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) va[i] = vb[i];
597843d17aSBarry Smith   }
607843d17aSBarry Smith 
617843d17aSBarry Smith   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
627843d17aSBarry Smith   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
63ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
647843d17aSBarry Smith 
657843d17aSBarry Smith   PetscFunctionReturn(0);
667843d17aSBarry Smith }
677843d17aSBarry Smith 
687fc3c18eSBarry Smith EXTERN_C_BEGIN
694a2ae208SSatish Balay #undef __FUNCT__
704a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
717fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat)
727fc3c18eSBarry Smith {
737fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
747fc3c18eSBarry Smith   int         ierr;
757fc3c18eSBarry Smith 
767fc3c18eSBarry Smith   PetscFunctionBegin;
777fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
787fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
797fc3c18eSBarry Smith   PetscFunctionReturn(0);
807fc3c18eSBarry Smith }
817fc3c18eSBarry Smith EXTERN_C_END
827fc3c18eSBarry Smith 
837fc3c18eSBarry Smith EXTERN_C_BEGIN
844a2ae208SSatish Balay #undef __FUNCT__
854a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
867fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat)
877fc3c18eSBarry Smith {
887fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
897fc3c18eSBarry Smith   int         ierr;
907fc3c18eSBarry Smith 
917fc3c18eSBarry Smith   PetscFunctionBegin;
927fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
937fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
947fc3c18eSBarry Smith   PetscFunctionReturn(0);
957fc3c18eSBarry Smith }
967fc3c18eSBarry Smith EXTERN_C_END
977fc3c18eSBarry Smith 
98537820f0SBarry Smith /*
99537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
10057b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
10157b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
10257b952d6SSatish Balay    length of colmap equals the global matrix length.
10357b952d6SSatish Balay */
1044a2ae208SSatish Balay #undef __FUNCT__
1054a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
10657b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat)
10757b952d6SSatish Balay {
10857b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
10957b952d6SSatish Balay   Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data;
110dc2900e9SSatish Balay   int         nbs = B->nbs,i,bs=B->bs,ierr;
11157b952d6SSatish Balay 
112d64ed03dSBarry Smith   PetscFunctionBegin;
113aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
114f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
11548e59246SSatish Balay   for (i=0; i<nbs; i++){
1160f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
11748e59246SSatish Balay   }
11848e59246SSatish Balay #else
11982502324SSatish Balay   ierr = PetscMalloc((baij->Nbs+1)*sizeof(int),&baij->colmap);CHKERRQ(ierr);
120b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,baij->Nbs*sizeof(int));
121549d3d68SSatish Balay   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr);
122928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
12348e59246SSatish Balay #endif
1243a40ed3dSBarry Smith   PetscFunctionReturn(0);
12557b952d6SSatish Balay }
12657b952d6SSatish Balay 
12780c1aa95SSatish Balay #define CHUNKSIZE  10
12880c1aa95SSatish Balay 
129f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
13080c1aa95SSatish Balay { \
13180c1aa95SSatish Balay  \
13280c1aa95SSatish Balay     brow = row/bs;  \
13380c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
134ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
13580c1aa95SSatish Balay       bcol = col/bs; \
13680c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
137ab26458aSBarry Smith       low = 0; high = nrow; \
138ab26458aSBarry Smith       while (high-low > 3) { \
139ab26458aSBarry Smith         t = (low+high)/2; \
140ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
141ab26458aSBarry Smith         else              low  = t; \
142ab26458aSBarry Smith       } \
143ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
14480c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
14580c1aa95SSatish Balay         if (rp[_i] == bcol) { \
14680c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
147eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
148eada6651SSatish Balay           else                    *bap  = value;  \
149ac7a638eSSatish Balay           goto a_noinsert; \
15080c1aa95SSatish Balay         } \
15180c1aa95SSatish Balay       } \
15289280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
15329bbc08cSBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
15480c1aa95SSatish Balay       if (nrow >= rmax) { \
15580c1aa95SSatish Balay         /* there is no extra room in row, therefore enlarge */ \
15680c1aa95SSatish Balay         int       new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
1573eda8832SBarry Smith         MatScalar *new_a; \
15880c1aa95SSatish Balay  \
15929bbc08cSBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
16089280ab3SLois Curfman McInnes  \
16180c1aa95SSatish Balay         /* malloc new storage space */ \
1623eda8832SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(a->mbs+1)*sizeof(int); \
16382502324SSatish Balay         ierr = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
16480c1aa95SSatish Balay         new_j   = (int*)(new_a + bs2*new_nz); \
16580c1aa95SSatish Balay         new_i   = new_j + new_nz; \
16680c1aa95SSatish Balay  \
16780c1aa95SSatish Balay         /* copy over old data into new slots */ \
16880c1aa95SSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = ai[ii];} \
16980c1aa95SSatish Balay         for (ii=brow+1; ii<a->mbs+1; ii++) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
170549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
17180c1aa95SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
1723eda8832SBarry Smith         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
1733eda8832SBarry Smith         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
17487828ca2SBarry Smith         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(PetscScalar));CHKERRQ(ierr); \
175549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
1763eda8832SBarry Smith                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
17780c1aa95SSatish Balay         /* free up old matrix storage */ \
178606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
179606d414cSSatish Balay         if (!a->singlemalloc) { \
180606d414cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
181606d414cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
182606d414cSSatish Balay         } \
18380c1aa95SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
1847c922b88SBarry Smith         a->singlemalloc = PETSC_TRUE; \
18580c1aa95SSatish Balay  \
18680c1aa95SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
187ac7a638eSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
188b0a32e0cSBarry Smith         PetscLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
18980c1aa95SSatish Balay         a->maxnz += bs2*CHUNKSIZE; \
19080c1aa95SSatish Balay         a->reallocs++; \
19180c1aa95SSatish Balay         a->nz++; \
19280c1aa95SSatish Balay       } \
19380c1aa95SSatish Balay       N = nrow++ - 1;  \
19480c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
19580c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
19680c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1973eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
19880c1aa95SSatish Balay       } \
1993eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
20080c1aa95SSatish Balay       rp[_i]                      = bcol;  \
20180c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
202ac7a638eSSatish Balay       a_noinsert:; \
20380c1aa95SSatish Balay     ailen[brow] = nrow; \
20480c1aa95SSatish Balay }
20557b952d6SSatish Balay 
206ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
207ac7a638eSSatish Balay { \
208ac7a638eSSatish Balay     brow = row/bs;  \
209ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
210ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
211ac7a638eSSatish Balay       bcol = col/bs; \
212ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
213ac7a638eSSatish Balay       low = 0; high = nrow; \
214ac7a638eSSatish Balay       while (high-low > 3) { \
215ac7a638eSSatish Balay         t = (low+high)/2; \
216ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
217ac7a638eSSatish Balay         else              low  = t; \
218ac7a638eSSatish Balay       } \
219ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
220ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
221ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
222ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
223ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
224ac7a638eSSatish Balay           else                    *bap  = value;  \
225ac7a638eSSatish Balay           goto b_noinsert; \
226ac7a638eSSatish Balay         } \
227ac7a638eSSatish Balay       } \
22889280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
22929bbc08cSBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero into matrix"); \
230ac7a638eSSatish Balay       if (nrow >= rmax) { \
231ac7a638eSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
23274c639caSSatish Balay         int       new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
2333eda8832SBarry Smith         MatScalar *new_a; \
234ac7a638eSSatish Balay  \
23529bbc08cSBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero in the matrix"); \
23689280ab3SLois Curfman McInnes  \
237ac7a638eSSatish Balay         /* malloc new storage space */ \
2383eda8832SBarry Smith         len     = new_nz*(sizeof(int)+bs2*sizeof(MatScalar))+(b->mbs+1)*sizeof(int); \
23982502324SSatish Balay         ierr    = PetscMalloc(len,&new_a);CHKERRQ(ierr); \
240ac7a638eSSatish Balay         new_j   = (int*)(new_a + bs2*new_nz); \
241ac7a638eSSatish Balay         new_i   = new_j + new_nz; \
242ac7a638eSSatish Balay  \
243ac7a638eSSatish Balay         /* copy over old data into new slots */ \
244ac7a638eSSatish Balay         for (ii=0; ii<brow+1; ii++) {new_i[ii] = bi[ii];} \
24574c639caSSatish Balay         for (ii=brow+1; ii<b->mbs+1; ii++) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
246549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
247ac7a638eSSatish Balay         len  = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
2483eda8832SBarry Smith         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow,len*sizeof(int));CHKERRQ(ierr); \
2493eda8832SBarry Smith         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(MatScalar));CHKERRQ(ierr); \
2503eda8832SBarry Smith         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(MatScalar));CHKERRQ(ierr); \
251549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
2523eda8832SBarry Smith                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(MatScalar));CHKERRQ(ierr);  \
253ac7a638eSSatish Balay         /* free up old matrix storage */ \
254606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
255606d414cSSatish Balay         if (!b->singlemalloc) { \
256606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
257606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
258606d414cSSatish Balay         } \
25974c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
2607c922b88SBarry Smith         b->singlemalloc = PETSC_TRUE; \
261ac7a638eSSatish Balay  \
262ac7a638eSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
263ac7a638eSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
264b0a32e0cSBarry Smith         PetscLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(MatScalar))); \
26574c639caSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
26674c639caSSatish Balay         b->reallocs++; \
26774c639caSSatish Balay         b->nz++; \
268ac7a638eSSatish Balay       } \
269ac7a638eSSatish Balay       N = nrow++ - 1;  \
270ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
271ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
272ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
2733eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
274ac7a638eSSatish Balay       } \
2753eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
276ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
277ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
278ac7a638eSSatish Balay       b_noinsert:; \
279ac7a638eSSatish Balay     bilen[brow] = nrow; \
280ac7a638eSSatish Balay }
281ac7a638eSSatish Balay 
28293fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
2834a2ae208SSatish Balay #undef __FUNCT__
2844a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
28587828ca2SBarry Smith int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
28657b952d6SSatish Balay {
2876fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
28893fea6afSBarry Smith   int         ierr,i,N = m*n;
2896fa18ffdSBarry Smith   MatScalar   *vsingle;
29093fea6afSBarry Smith 
29193fea6afSBarry Smith   PetscFunctionBegin;
2926fa18ffdSBarry Smith   if (N > b->setvalueslen) {
2936fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
29482502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
2956fa18ffdSBarry Smith     b->setvalueslen  = N;
2966fa18ffdSBarry Smith   }
2976fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
2986fa18ffdSBarry Smith 
29993fea6afSBarry Smith   for (i=0; i<N; i++) {
30093fea6afSBarry Smith     vsingle[i] = v[i];
30193fea6afSBarry Smith   }
30293fea6afSBarry Smith   ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
30393fea6afSBarry Smith   PetscFunctionReturn(0);
30493fea6afSBarry Smith }
30593fea6afSBarry Smith 
3064a2ae208SSatish Balay #undef __FUNCT__
3074a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
30887828ca2SBarry Smith int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
30993fea6afSBarry Smith {
3106fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
3116fa18ffdSBarry Smith   int         ierr,i,N = m*n*b->bs2;
3126fa18ffdSBarry Smith   MatScalar   *vsingle;
31393fea6afSBarry Smith 
31493fea6afSBarry Smith   PetscFunctionBegin;
3156fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3166fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
31782502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3186fa18ffdSBarry Smith     b->setvalueslen  = N;
3196fa18ffdSBarry Smith   }
3206fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
32193fea6afSBarry Smith   for (i=0; i<N; i++) {
32293fea6afSBarry Smith     vsingle[i] = v[i];
32393fea6afSBarry Smith   }
32493fea6afSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
32593fea6afSBarry Smith   PetscFunctionReturn(0);
32693fea6afSBarry Smith }
3276fa18ffdSBarry Smith 
3284a2ae208SSatish Balay #undef __FUNCT__
3294a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
33087828ca2SBarry Smith int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
3316fa18ffdSBarry Smith {
3326fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
3336fa18ffdSBarry Smith   int         ierr,i,N = m*n;
3346fa18ffdSBarry Smith   MatScalar   *vsingle;
3356fa18ffdSBarry Smith 
3366fa18ffdSBarry Smith   PetscFunctionBegin;
3376fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3386fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
33982502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3406fa18ffdSBarry Smith     b->setvalueslen  = N;
3416fa18ffdSBarry Smith   }
3426fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
3436fa18ffdSBarry Smith   for (i=0; i<N; i++) {
3446fa18ffdSBarry Smith     vsingle[i] = v[i];
3456fa18ffdSBarry Smith   }
3466fa18ffdSBarry Smith   ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3476fa18ffdSBarry Smith   PetscFunctionReturn(0);
3486fa18ffdSBarry Smith }
3496fa18ffdSBarry Smith 
3504a2ae208SSatish Balay #undef __FUNCT__
3514a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
35287828ca2SBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,PetscScalar *v,InsertMode addv)
3536fa18ffdSBarry Smith {
3546fa18ffdSBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data;
3556fa18ffdSBarry Smith   int         ierr,i,N = m*n*b->bs2;
3566fa18ffdSBarry Smith   MatScalar   *vsingle;
3576fa18ffdSBarry Smith 
3586fa18ffdSBarry Smith   PetscFunctionBegin;
3596fa18ffdSBarry Smith   if (N > b->setvalueslen) {
3606fa18ffdSBarry Smith     if (b->setvaluescopy) {ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr);}
36182502324SSatish Balay     ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr);
3626fa18ffdSBarry Smith     b->setvalueslen  = N;
3636fa18ffdSBarry Smith   }
3646fa18ffdSBarry Smith   vsingle = b->setvaluescopy;
3656fa18ffdSBarry Smith   for (i=0; i<N; i++) {
3666fa18ffdSBarry Smith     vsingle[i] = v[i];
3676fa18ffdSBarry Smith   }
3686fa18ffdSBarry Smith   ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr);
3696fa18ffdSBarry Smith   PetscFunctionReturn(0);
3706fa18ffdSBarry Smith }
37193fea6afSBarry Smith #endif
37293fea6afSBarry Smith 
3734a2ae208SSatish Balay #undef __FUNCT__
3744a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
37593fea6afSBarry Smith int MatSetValues_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
37693fea6afSBarry Smith {
37757b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
37893fea6afSBarry Smith   MatScalar   value;
379273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
3804fa0d573SSatish Balay   int         ierr,i,j,row,col;
381273d9f13SBarry Smith   int         rstart_orig=baij->rstart_bs;
3824fa0d573SSatish Balay   int         rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
3834fa0d573SSatish Balay   int         cend_orig=baij->cend_bs,bs=baij->bs;
38457b952d6SSatish Balay 
385eada6651SSatish Balay   /* Some Variables required in the macro */
38680c1aa95SSatish Balay   Mat         A = baij->A;
38780c1aa95SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data;
388ac7a638eSSatish Balay   int         *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
3893eda8832SBarry Smith   MatScalar   *aa=a->a;
390ac7a638eSSatish Balay 
391ac7a638eSSatish Balay   Mat         B = baij->B;
392ac7a638eSSatish Balay   Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data;
393ac7a638eSSatish Balay   int         *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
3943eda8832SBarry Smith   MatScalar   *ba=b->a;
395ac7a638eSSatish Balay 
396ac7a638eSSatish Balay   int         *rp,ii,nrow,_i,rmax,N,brow,bcol;
397ab26458aSBarry Smith   int         low,high,t,ridx,cidx,bs2=a->bs2;
3983eda8832SBarry Smith   MatScalar   *ap,*bap;
39980c1aa95SSatish Balay 
400d64ed03dSBarry Smith   PetscFunctionBegin;
40157b952d6SSatish Balay   for (i=0; i<m; i++) {
4025ef9f2a5SBarry Smith     if (im[i] < 0) continue;
403aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
404273d9f13SBarry Smith     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
405639f9d9dSBarry Smith #endif
40657b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
40757b952d6SSatish Balay       row = im[i] - rstart_orig;
40857b952d6SSatish Balay       for (j=0; j<n; j++) {
40957b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
41057b952d6SSatish Balay           col = in[j] - cstart_orig;
41157b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
412f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
41380c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
41473959e64SBarry Smith         } else if (in[j] < 0) continue;
415aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
416273d9f13SBarry Smith         else if (in[j] >= mat->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");}
417639f9d9dSBarry Smith #endif
41857b952d6SSatish Balay         else {
41957b952d6SSatish Balay           if (mat->was_assembled) {
420905e6a2fSBarry Smith             if (!baij->colmap) {
421905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
422905e6a2fSBarry Smith             }
423aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
4240f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
425bba1ac68SSatish Balay             col  = col - 1;
42648e59246SSatish Balay #else
427bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
42848e59246SSatish Balay #endif
42957b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
43057b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
4318295de27SSatish Balay               col =  in[j];
4329bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
4339bf004c3SSatish Balay               B = baij->B;
4349bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
4359bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
4369bf004c3SSatish Balay               ba=b->a;
437bba1ac68SSatish Balay             } else col += in[j]%bs;
4388295de27SSatish Balay           } else col = in[j];
43957b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
44090da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
44190da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
44257b952d6SSatish Balay         }
44357b952d6SSatish Balay       }
444d64ed03dSBarry Smith     } else {
44590f02eecSBarry Smith       if (!baij->donotstash) {
446ff2fd236SBarry Smith         if (roworiented) {
4476fa18ffdSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
448ff2fd236SBarry Smith         } else {
4496fa18ffdSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
45057b952d6SSatish Balay         }
45157b952d6SSatish Balay       }
45257b952d6SSatish Balay     }
45390f02eecSBarry Smith   }
4543a40ed3dSBarry Smith   PetscFunctionReturn(0);
45557b952d6SSatish Balay }
45657b952d6SSatish Balay 
4574a2ae208SSatish Balay #undef __FUNCT__
4584a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar"
45993fea6afSBarry Smith int MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
460ab26458aSBarry Smith {
461ab26458aSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
46293fea6afSBarry Smith   MatScalar   *value,*barray=baij->barray;
463273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
464273d9f13SBarry Smith   int         ierr,i,j,ii,jj,row,col,rstart=baij->rstart;
465ab26458aSBarry Smith   int         rend=baij->rend,cstart=baij->cstart,stepval;
466ab26458aSBarry Smith   int         cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
467ab26458aSBarry Smith 
468b16ae2b1SBarry Smith   PetscFunctionBegin;
46930793edcSSatish Balay   if(!barray) {
47082502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
47182502324SSatish Balay     baij->barray = barray;
47230793edcSSatish Balay   }
47330793edcSSatish Balay 
474ab26458aSBarry Smith   if (roworiented) {
475ab26458aSBarry Smith     stepval = (n-1)*bs;
476ab26458aSBarry Smith   } else {
477ab26458aSBarry Smith     stepval = (m-1)*bs;
478ab26458aSBarry Smith   }
479ab26458aSBarry Smith   for (i=0; i<m; i++) {
4805ef9f2a5SBarry Smith     if (im[i] < 0) continue;
481aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
48229bbc08cSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %d max %d",im[i],baij->Mbs);
483ab26458aSBarry Smith #endif
484ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
485ab26458aSBarry Smith       row = im[i] - rstart;
486ab26458aSBarry Smith       for (j=0; j<n; j++) {
48715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
48815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
48915b57d14SSatish Balay           barray = v + i*bs2;
49015b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
49115b57d14SSatish Balay           barray = v + j*bs2;
49215b57d14SSatish Balay         } else { /* Here a copy is required */
493ab26458aSBarry Smith           if (roworiented) {
494ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
495ab26458aSBarry Smith           } else {
496ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
497abef11f7SSatish Balay           }
49847513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
49947513183SBarry Smith             for (jj=0; jj<bs; jj++) {
50030793edcSSatish Balay               *barray++  = *value++;
50147513183SBarry Smith             }
50247513183SBarry Smith           }
50330793edcSSatish Balay           barray -=bs2;
50415b57d14SSatish Balay         }
505abef11f7SSatish Balay 
506abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
507abef11f7SSatish Balay           col  = in[j] - cstart;
50893fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
509ab26458aSBarry Smith         }
5105ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
511aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
51229bbc08cSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %d max %d",in[j],baij->Nbs);}
513ab26458aSBarry Smith #endif
514ab26458aSBarry Smith         else {
515ab26458aSBarry Smith           if (mat->was_assembled) {
516ab26458aSBarry Smith             if (!baij->colmap) {
517ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
518ab26458aSBarry Smith             }
519a5eb4965SSatish Balay 
520aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
521aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
522fa46199cSSatish Balay             { int data;
5230f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
52429bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
525fa46199cSSatish Balay             }
52648e59246SSatish Balay #else
52729bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
528a5eb4965SSatish Balay #endif
52948e59246SSatish Balay #endif
530aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
5310f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
532fa46199cSSatish Balay             col  = (col - 1)/bs;
53348e59246SSatish Balay #else
534a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
53548e59246SSatish Balay #endif
536ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
537ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
538ab26458aSBarry Smith               col =  in[j];
539ab26458aSBarry Smith             }
540ab26458aSBarry Smith           }
541ab26458aSBarry Smith           else col = in[j];
54293fea6afSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
543ab26458aSBarry Smith         }
544ab26458aSBarry Smith       }
545d64ed03dSBarry Smith     } else {
546ab26458aSBarry Smith       if (!baij->donotstash) {
547ff2fd236SBarry Smith         if (roworiented) {
5486fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
549ff2fd236SBarry Smith         } else {
5506fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
551ff2fd236SBarry Smith         }
552abef11f7SSatish Balay       }
553ab26458aSBarry Smith     }
554ab26458aSBarry Smith   }
5553a40ed3dSBarry Smith   PetscFunctionReturn(0);
556ab26458aSBarry Smith }
5576fa18ffdSBarry Smith 
5580bdbc534SSatish Balay #define HASH_KEY 0.6180339887
559c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
5606fa18ffdSBarry Smith /* #define HASH(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
561c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
5624a2ae208SSatish Balay #undef __FUNCT__
5634a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar"
5646fa18ffdSBarry Smith int MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
5650bdbc534SSatish Balay {
5660bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
567273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
5680bdbc534SSatish Balay   int         ierr,i,j,row,col;
569273d9f13SBarry Smith   int         rstart_orig=baij->rstart_bs;
570c2760754SSatish Balay   int         rend_orig=baij->rend_bs,Nbs=baij->Nbs;
571c2760754SSatish Balay   int         h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx;
572329f5518SBarry Smith   PetscReal   tmp;
5733eda8832SBarry Smith   MatScalar   **HD = baij->hd,value;
574aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
5754a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5764a15367fSSatish Balay #endif
5770bdbc534SSatish Balay 
5780bdbc534SSatish Balay   PetscFunctionBegin;
5790bdbc534SSatish Balay 
5800bdbc534SSatish Balay   for (i=0; i<m; i++) {
581aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
58229bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
583273d9f13SBarry Smith     if (im[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
5840bdbc534SSatish Balay #endif
5850bdbc534SSatish Balay       row = im[i];
586c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5870bdbc534SSatish Balay       for (j=0; j<n; j++) {
5880bdbc534SSatish Balay         col = in[j];
5896fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
5900bdbc534SSatish Balay         /* Look up into the Hash Table */
591c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
592c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5930bdbc534SSatish Balay 
594c2760754SSatish Balay 
595c2760754SSatish Balay         idx = h1;
596aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
597187ce0cbSSatish Balay         insert_ct++;
598187ce0cbSSatish Balay         total_ct++;
599187ce0cbSSatish Balay         if (HT[idx] != key) {
600187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
601187ce0cbSSatish Balay           if (idx == size) {
602187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
603187ce0cbSSatish Balay             if (idx == h1) {
60429bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
605187ce0cbSSatish Balay             }
606187ce0cbSSatish Balay           }
607187ce0cbSSatish Balay         }
608187ce0cbSSatish Balay #else
609c2760754SSatish Balay         if (HT[idx] != key) {
610c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
611c2760754SSatish Balay           if (idx == size) {
612c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
613c2760754SSatish Balay             if (idx == h1) {
61429bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
615c2760754SSatish Balay             }
616c2760754SSatish Balay           }
617c2760754SSatish Balay         }
618187ce0cbSSatish Balay #endif
619c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
620c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
621c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
6220bdbc534SSatish Balay       }
6230bdbc534SSatish Balay     } else {
6240bdbc534SSatish Balay       if (!baij->donotstash) {
625ff2fd236SBarry Smith         if (roworiented) {
6268798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
627ff2fd236SBarry Smith         } else {
6288798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
6290bdbc534SSatish Balay         }
6300bdbc534SSatish Balay       }
6310bdbc534SSatish Balay     }
6320bdbc534SSatish Balay   }
633aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
634187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
635187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
636187ce0cbSSatish Balay #endif
6370bdbc534SSatish Balay   PetscFunctionReturn(0);
6380bdbc534SSatish Balay }
6390bdbc534SSatish Balay 
6404a2ae208SSatish Balay #undef __FUNCT__
6414a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar"
6426fa18ffdSBarry Smith int MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,int m,int *im,int n,int *in,MatScalar *v,InsertMode addv)
6430bdbc534SSatish Balay {
6440bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
645273d9f13SBarry Smith   PetscTruth  roworiented = baij->roworiented;
6468798bf22SSatish Balay   int         ierr,i,j,ii,jj,row,col;
647273d9f13SBarry Smith   int         rstart=baij->rstart ;
648b4cc0f5aSSatish Balay   int         rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2;
649c2760754SSatish Balay   int         h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
650329f5518SBarry Smith   PetscReal   tmp;
6513eda8832SBarry Smith   MatScalar   **HD = baij->hd,*baij_a;
6526fa18ffdSBarry Smith   MatScalar   *v_t,*value;
653aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
6544a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
6554a15367fSSatish Balay #endif
6560bdbc534SSatish Balay 
657d0a41580SSatish Balay   PetscFunctionBegin;
658d0a41580SSatish Balay 
6590bdbc534SSatish Balay   if (roworiented) {
6600bdbc534SSatish Balay     stepval = (n-1)*bs;
6610bdbc534SSatish Balay   } else {
6620bdbc534SSatish Balay     stepval = (m-1)*bs;
6630bdbc534SSatish Balay   }
6640bdbc534SSatish Balay   for (i=0; i<m; i++) {
665aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
66629bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
66729bbc08cSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
6680bdbc534SSatish Balay #endif
6690bdbc534SSatish Balay     row   = im[i];
670187ce0cbSSatish Balay     v_t   = v + i*bs2;
671c2760754SSatish Balay     if (row >= rstart && row < rend) {
6720bdbc534SSatish Balay       for (j=0; j<n; j++) {
6730bdbc534SSatish Balay         col = in[j];
6740bdbc534SSatish Balay 
6750bdbc534SSatish Balay         /* Look up into the Hash Table */
676c2760754SSatish Balay         key = row*Nbs+col+1;
677c2760754SSatish Balay         h1  = HASH(size,key,tmp);
6780bdbc534SSatish Balay 
679c2760754SSatish Balay         idx = h1;
680aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
681187ce0cbSSatish Balay         total_ct++;
682187ce0cbSSatish Balay         insert_ct++;
683187ce0cbSSatish Balay        if (HT[idx] != key) {
684187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
685187ce0cbSSatish Balay           if (idx == size) {
686187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
687187ce0cbSSatish Balay             if (idx == h1) {
68829bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
689187ce0cbSSatish Balay             }
690187ce0cbSSatish Balay           }
691187ce0cbSSatish Balay         }
692187ce0cbSSatish Balay #else
693c2760754SSatish Balay         if (HT[idx] != key) {
694c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
695c2760754SSatish Balay           if (idx == size) {
696c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
697c2760754SSatish Balay             if (idx == h1) {
69829bbc08cSBarry Smith               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"(row,col) has no entry in the hash table");
699c2760754SSatish Balay             }
700c2760754SSatish Balay           }
701c2760754SSatish Balay         }
702187ce0cbSSatish Balay #endif
703c2760754SSatish Balay         baij_a = HD[idx];
7040bdbc534SSatish Balay         if (roworiented) {
705c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
706187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
707187ce0cbSSatish Balay           value = v_t;
708187ce0cbSSatish Balay           v_t  += bs;
709fef45726SSatish Balay           if (addv == ADD_VALUES) {
710c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
711c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
712fef45726SSatish Balay                 baij_a[jj]  += *value++;
713b4cc0f5aSSatish Balay               }
714b4cc0f5aSSatish Balay             }
715fef45726SSatish Balay           } else {
716c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
717c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
718fef45726SSatish Balay                 baij_a[jj]  = *value++;
719fef45726SSatish Balay               }
720fef45726SSatish Balay             }
721fef45726SSatish Balay           }
7220bdbc534SSatish Balay         } else {
7230bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
724fef45726SSatish Balay           if (addv == ADD_VALUES) {
725b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
7260bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
727fef45726SSatish Balay                 baij_a[jj]  += *value++;
728fef45726SSatish Balay               }
729fef45726SSatish Balay             }
730fef45726SSatish Balay           } else {
731fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
732fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
733fef45726SSatish Balay                 baij_a[jj]  = *value++;
734fef45726SSatish Balay               }
735b4cc0f5aSSatish Balay             }
7360bdbc534SSatish Balay           }
7370bdbc534SSatish Balay         }
7380bdbc534SSatish Balay       }
7390bdbc534SSatish Balay     } else {
7400bdbc534SSatish Balay       if (!baij->donotstash) {
7410bdbc534SSatish Balay         if (roworiented) {
7428798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
7430bdbc534SSatish Balay         } else {
7448798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
7450bdbc534SSatish Balay         }
7460bdbc534SSatish Balay       }
7470bdbc534SSatish Balay     }
7480bdbc534SSatish Balay   }
749aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
750187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
751187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
752187ce0cbSSatish Balay #endif
7530bdbc534SSatish Balay   PetscFunctionReturn(0);
7540bdbc534SSatish Balay }
755133cdb44SSatish Balay 
7564a2ae208SSatish Balay #undef __FUNCT__
7574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
75887828ca2SBarry Smith int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,PetscScalar *v)
759d6de1c52SSatish Balay {
760d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
761d6de1c52SSatish Balay   int        bs=baij->bs,ierr,i,j,bsrstart = baij->rstart*bs,bsrend = baij->rend*bs;
76248e59246SSatish Balay   int        bscstart = baij->cstart*bs,bscend = baij->cend*bs,row,col,data;
763d6de1c52SSatish Balay 
764133cdb44SSatish Balay   PetscFunctionBegin;
765d6de1c52SSatish Balay   for (i=0; i<m; i++) {
76629bbc08cSBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
767273d9f13SBarry Smith     if (idxm[i] >= mat->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Row too large");
768d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
769d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
770d6de1c52SSatish Balay       for (j=0; j<n; j++) {
77129bbc08cSBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative column");
772273d9f13SBarry Smith         if (idxn[j] >= mat->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Column too large");
773d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
774d6de1c52SSatish Balay           col = idxn[j] - bscstart;
77598dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
776d64ed03dSBarry Smith         } else {
777905e6a2fSBarry Smith           if (!baij->colmap) {
778905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
779905e6a2fSBarry Smith           }
780aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
7810f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
782fa46199cSSatish Balay           data --;
78348e59246SSatish Balay #else
78448e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
78548e59246SSatish Balay #endif
78648e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
787d9d09a02SSatish Balay           else {
78848e59246SSatish Balay             col  = data + idxn[j]%bs;
78998dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
790d6de1c52SSatish Balay           }
791d6de1c52SSatish Balay         }
792d6de1c52SSatish Balay       }
793d64ed03dSBarry Smith     } else {
79429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
795d6de1c52SSatish Balay     }
796d6de1c52SSatish Balay   }
7973a40ed3dSBarry Smith  PetscFunctionReturn(0);
798d6de1c52SSatish Balay }
799d6de1c52SSatish Balay 
8004a2ae208SSatish Balay #undef __FUNCT__
8014a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
802*064f8208SBarry Smith int MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
803d6de1c52SSatish Balay {
804d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
805d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
806acdf5bf4SSatish Balay   int        ierr,i,bs2=baij->bs2;
807329f5518SBarry Smith   PetscReal  sum = 0.0;
8083eda8832SBarry Smith   MatScalar  *v;
809d6de1c52SSatish Balay 
810d64ed03dSBarry Smith   PetscFunctionBegin;
811d6de1c52SSatish Balay   if (baij->size == 1) {
812*064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
813d6de1c52SSatish Balay   } else {
814d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
815d6de1c52SSatish Balay       v = amat->a;
816d6de1c52SSatish Balay       for (i=0; i<amat->nz*bs2; i++) {
817aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
818329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
819d6de1c52SSatish Balay #else
820d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
821d6de1c52SSatish Balay #endif
822d6de1c52SSatish Balay       }
823d6de1c52SSatish Balay       v = bmat->a;
824d6de1c52SSatish Balay       for (i=0; i<bmat->nz*bs2; i++) {
825aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
826329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
827d6de1c52SSatish Balay #else
828d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
829d6de1c52SSatish Balay #endif
830d6de1c52SSatish Balay       }
831*064f8208SBarry Smith       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr);
832*064f8208SBarry Smith       *nrm = sqrt(*nrm);
833d64ed03dSBarry Smith     } else {
83429bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
835d6de1c52SSatish Balay     }
836d64ed03dSBarry Smith   }
8373a40ed3dSBarry Smith   PetscFunctionReturn(0);
838d6de1c52SSatish Balay }
83957b952d6SSatish Balay 
840bd7f49f5SSatish Balay 
841fef45726SSatish Balay /*
842fef45726SSatish Balay   Creates the hash table, and sets the table
843fef45726SSatish Balay   This table is created only once.
844fef45726SSatish Balay   If new entried need to be added to the matrix
845fef45726SSatish Balay   then the hash table has to be destroyed and
846fef45726SSatish Balay   recreated.
847fef45726SSatish Balay */
8484a2ae208SSatish Balay #undef __FUNCT__
8494a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
850329f5518SBarry Smith int MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
851596b8d2eSBarry Smith {
852596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
853596b8d2eSBarry Smith   Mat         A = baij->A,B=baij->B;
854596b8d2eSBarry Smith   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
8550bdbc534SSatish Balay   int         i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
856549d3d68SSatish Balay   int         size,bs2=baij->bs2,rstart=baij->rstart,ierr;
857187ce0cbSSatish Balay   int         cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs;
858fef45726SSatish Balay   int         *HT,key;
8593eda8832SBarry Smith   MatScalar   **HD;
860329f5518SBarry Smith   PetscReal   tmp;
861aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
8624a15367fSSatish Balay   int         ct=0,max=0;
8634a15367fSSatish Balay #endif
864fef45726SSatish Balay 
865d64ed03dSBarry Smith   PetscFunctionBegin;
8660bdbc534SSatish Balay   baij->ht_size=(int)(factor*nz);
8670bdbc534SSatish Balay   size = baij->ht_size;
868fef45726SSatish Balay 
8690bdbc534SSatish Balay   if (baij->ht) {
8700bdbc534SSatish Balay     PetscFunctionReturn(0);
871596b8d2eSBarry Smith   }
8720bdbc534SSatish Balay 
873fef45726SSatish Balay   /* Allocate Memory for Hash Table */
874b0a32e0cSBarry Smith   ierr     = PetscMalloc((size)*(sizeof(int)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
875b9e4cc15SSatish Balay   baij->ht = (int*)(baij->hd + size);
876b9e4cc15SSatish Balay   HD       = baij->hd;
877a07cd24cSSatish Balay   HT       = baij->ht;
878b9e4cc15SSatish Balay 
879b9e4cc15SSatish Balay 
88087828ca2SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(PetscScalar*)));CHKERRQ(ierr);
8810bdbc534SSatish Balay 
882596b8d2eSBarry Smith 
883596b8d2eSBarry Smith   /* Loop Over A */
8840bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
885596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8860bdbc534SSatish Balay       row = i+rstart;
8870bdbc534SSatish Balay       col = aj[j]+cstart;
888596b8d2eSBarry Smith 
889187ce0cbSSatish Balay       key = row*Nbs + col + 1;
890c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8910bdbc534SSatish Balay       for (k=0; k<size; k++){
8920bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
8930bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8940bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
895596b8d2eSBarry Smith           break;
896aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
897187ce0cbSSatish Balay         } else {
898187ce0cbSSatish Balay           ct++;
899187ce0cbSSatish Balay #endif
900596b8d2eSBarry Smith         }
901187ce0cbSSatish Balay       }
902aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
903187ce0cbSSatish Balay       if (k> max) max = k;
904187ce0cbSSatish Balay #endif
905596b8d2eSBarry Smith     }
906596b8d2eSBarry Smith   }
907596b8d2eSBarry Smith   /* Loop Over B */
9080bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
909596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
9100bdbc534SSatish Balay       row = i+rstart;
9110bdbc534SSatish Balay       col = garray[bj[j]];
912187ce0cbSSatish Balay       key = row*Nbs + col + 1;
913c2760754SSatish Balay       h1  = HASH(size,key,tmp);
9140bdbc534SSatish Balay       for (k=0; k<size; k++){
9150bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
9160bdbc534SSatish Balay           HT[(h1+k)%size] = key;
9170bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
918596b8d2eSBarry Smith           break;
919aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
920187ce0cbSSatish Balay         } else {
921187ce0cbSSatish Balay           ct++;
922187ce0cbSSatish Balay #endif
923596b8d2eSBarry Smith         }
924187ce0cbSSatish Balay       }
925aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
926187ce0cbSSatish Balay       if (k> max) max = k;
927187ce0cbSSatish Balay #endif
928596b8d2eSBarry Smith     }
929596b8d2eSBarry Smith   }
930596b8d2eSBarry Smith 
931596b8d2eSBarry Smith   /* Print Summary */
932aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
933c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
934596b8d2eSBarry Smith     if (HT[i]) {j++;}
935c38d4ed2SBarry Smith   }
936b0a32e0cSBarry Smith   PetscLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",(j== 0)? 0.0:((PetscReal)(ct+j))/j,max);
937187ce0cbSSatish Balay #endif
9383a40ed3dSBarry Smith   PetscFunctionReturn(0);
939596b8d2eSBarry Smith }
94057b952d6SSatish Balay 
9414a2ae208SSatish Balay #undef __FUNCT__
9424a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
943bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
944bbb85fb3SSatish Balay {
945bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
946ff2fd236SBarry Smith   int         ierr,nstash,reallocs;
947bbb85fb3SSatish Balay   InsertMode  addv;
948bbb85fb3SSatish Balay 
949bbb85fb3SSatish Balay   PetscFunctionBegin;
950bbb85fb3SSatish Balay   if (baij->donotstash) {
951bbb85fb3SSatish Balay     PetscFunctionReturn(0);
952bbb85fb3SSatish Balay   }
953bbb85fb3SSatish Balay 
954bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
955bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
956bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
95729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
958bbb85fb3SSatish Balay   }
959bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
960bbb85fb3SSatish Balay 
9618798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
9628798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
9638798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
964b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries,uses %d mallocs.\n",nstash,reallocs);
96546680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
966b0a32e0cSBarry Smith   PetscLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
967bbb85fb3SSatish Balay   PetscFunctionReturn(0);
968bbb85fb3SSatish Balay }
969bbb85fb3SSatish Balay 
9704a2ae208SSatish Balay #undef __FUNCT__
9714a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
972bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
973bbb85fb3SSatish Balay {
974bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data;
975a2d1c673SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data;
976a2d1c673SSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
9777c922b88SBarry Smith   int         *row,*col,other_disassembled;
9787c922b88SBarry Smith   PetscTruth  r1,r2,r3;
9793eda8832SBarry Smith   MatScalar   *val;
980bbb85fb3SSatish Balay   InsertMode  addv = mat->insertmode;
981bbb85fb3SSatish Balay 
982bbb85fb3SSatish Balay   PetscFunctionBegin;
983bbb85fb3SSatish Balay   if (!baij->donotstash) {
984a2d1c673SSatish Balay     while (1) {
9858798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
986a2d1c673SSatish Balay       if (!flg) break;
987a2d1c673SSatish Balay 
988bbb85fb3SSatish Balay       for (i=0; i<n;) {
989bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
990bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
991bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
992bbb85fb3SSatish Balay         else       ncols = n-i;
993bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
99493fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
995bbb85fb3SSatish Balay         i = j;
996bbb85fb3SSatish Balay       }
997bbb85fb3SSatish Balay     }
9988798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
999a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
1000a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
1001a2d1c673SSatish Balay        restore the original flags */
1002a2d1c673SSatish Balay     r1 = baij->roworiented;
1003a2d1c673SSatish Balay     r2 = a->roworiented;
1004a2d1c673SSatish Balay     r3 = b->roworiented;
10057c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
10067c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
10077c922b88SBarry Smith     b->roworiented    = PETSC_FALSE;
1008a2d1c673SSatish Balay     while (1) {
10098798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
1010a2d1c673SSatish Balay       if (!flg) break;
1011a2d1c673SSatish Balay 
1012a2d1c673SSatish Balay       for (i=0; i<n;) {
1013a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
1014a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
1015a2d1c673SSatish Balay         if (j < n) ncols = j-i;
1016a2d1c673SSatish Balay         else       ncols = n-i;
101793fea6afSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
1018a2d1c673SSatish Balay         i = j;
1019a2d1c673SSatish Balay       }
1020a2d1c673SSatish Balay     }
10218798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
1022a2d1c673SSatish Balay     baij->roworiented = r1;
1023a2d1c673SSatish Balay     a->roworiented    = r2;
1024a2d1c673SSatish Balay     b->roworiented    = r3;
1025bbb85fb3SSatish Balay   }
1026bbb85fb3SSatish Balay 
1027bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
1028bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
1029bbb85fb3SSatish Balay 
1030bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
1031bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
1032bbb85fb3SSatish Balay   /*
1033bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
1034bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
1035bbb85fb3SSatish Balay   */
1036bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
1037bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
1038bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
1039bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
1040bbb85fb3SSatish Balay     }
1041bbb85fb3SSatish Balay   }
1042bbb85fb3SSatish Balay 
1043bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
1044bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
1045bbb85fb3SSatish Balay   }
1046bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
1047bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
1048bbb85fb3SSatish Balay 
1049aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
1050bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
1051f6275e2eSBarry Smith     PetscLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);
1052bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1053bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1054bbb85fb3SSatish Balay   }
1055bbb85fb3SSatish Balay #endif
1056bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1057bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
1058bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1059bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1060bbb85fb3SSatish Balay   }
1061bbb85fb3SSatish Balay 
1062606d414cSSatish Balay   if (baij->rowvalues) {
1063606d414cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
1064606d414cSSatish Balay     baij->rowvalues = 0;
1065606d414cSSatish Balay   }
1066bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1067bbb85fb3SSatish Balay }
106857b952d6SSatish Balay 
10694a2ae208SSatish Balay #undef __FUNCT__
10704a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
1071b0a32e0cSBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
107257b952d6SSatish Balay {
107357b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1074fb9695e5SSatish Balay   int               ierr,bs = baij->bs,size = baij->size,rank = baij->rank;
10756831982aSBarry Smith   PetscTruth        isascii,isdraw;
1076b0a32e0cSBarry Smith   PetscViewer       sviewer;
1077f3ef73ceSBarry Smith   PetscViewerFormat format;
107857b952d6SSatish Balay 
1079d64ed03dSBarry Smith   PetscFunctionBegin;
1080b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
1081fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
10820f5bd95cSBarry Smith   if (isascii) {
1083b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1084fb9695e5SSatish Balay     if (format == PETSC_VIEWER_ASCII_INFO_LONG) {
10854e220ebcSLois Curfman McInnes       MatInfo info;
1086d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
1087d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
1088b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
1089273d9f13SBarry Smith               rank,mat->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
10906831982aSBarry Smith               baij->bs,(int)info.memory);CHKERRQ(ierr);
1091d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
1092b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
1093d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
1094b0a32e0cSBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);CHKERRQ(ierr);
1095b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
109657b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
10973a40ed3dSBarry Smith       PetscFunctionReturn(0);
1098fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
1099b0a32e0cSBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %d\n",bs);CHKERRQ(ierr);
11003a40ed3dSBarry Smith       PetscFunctionReturn(0);
110157b952d6SSatish Balay     }
110257b952d6SSatish Balay   }
110357b952d6SSatish Balay 
11040f5bd95cSBarry Smith   if (isdraw) {
1105b0a32e0cSBarry Smith     PetscDraw       draw;
110657b952d6SSatish Balay     PetscTruth isnull;
1107b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1108b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
110957b952d6SSatish Balay   }
111057b952d6SSatish Balay 
111157b952d6SSatish Balay   if (size == 1) {
1112873048abSBarry Smith     ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr);
111357b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1114d64ed03dSBarry Smith   } else {
111557b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
111657b952d6SSatish Balay     Mat         A;
111757b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1118273d9f13SBarry Smith     int         M = mat->M,N = mat->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
11193eda8832SBarry Smith     MatScalar   *a;
112057b952d6SSatish Balay 
112157b952d6SSatish Balay     if (!rank) {
112255843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
1123d64ed03dSBarry Smith     } else {
112455843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
112557b952d6SSatish Balay     }
1126b0a32e0cSBarry Smith     PetscLogObjectParent(mat,A);
112757b952d6SSatish Balay 
112857b952d6SSatish Balay     /* copy over the A part */
112957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
113057b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
113182502324SSatish Balay     ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
113257b952d6SSatish Balay 
113357b952d6SSatish Balay     for (i=0; i<mbs; i++) {
113457b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
113557b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
113657b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
113757b952d6SSatish Balay         col = (baij->cstart+aj[j])*bs;
113857b952d6SSatish Balay         for (k=0; k<bs; k++) {
113993fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1140cee3aa6bSSatish Balay           col++; a += bs;
114157b952d6SSatish Balay         }
114257b952d6SSatish Balay       }
114357b952d6SSatish Balay     }
114457b952d6SSatish Balay     /* copy over the B part */
114557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
114657b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
114757b952d6SSatish Balay     for (i=0; i<mbs; i++) {
114857b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
114957b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
115057b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
115157b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
115257b952d6SSatish Balay         for (k=0; k<bs; k++) {
115393fea6afSBarry Smith           ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1154cee3aa6bSSatish Balay           col++; a += bs;
115557b952d6SSatish Balay         }
115657b952d6SSatish Balay       }
115757b952d6SSatish Balay     }
1158606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
11596d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11606d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
116155843e3eSBarry Smith     /*
116255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1163b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
116455843e3eSBarry Smith     */
1165b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1166f14a1c24SBarry Smith     if (!rank) {
1167e36acaf3SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr);
11686831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
116957b952d6SSatish Balay     }
1170b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
117157b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
117257b952d6SSatish Balay   }
11733a40ed3dSBarry Smith   PetscFunctionReturn(0);
117457b952d6SSatish Balay }
117557b952d6SSatish Balay 
11764a2ae208SSatish Balay #undef __FUNCT__
11774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1178b0a32e0cSBarry Smith int MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
117957b952d6SSatish Balay {
118057b952d6SSatish Balay   int        ierr;
11816831982aSBarry Smith   PetscTruth isascii,isdraw,issocket,isbinary;
118257b952d6SSatish Balay 
1183d64ed03dSBarry Smith   PetscFunctionBegin;
1184b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
1185fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1186b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1187fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
11880f5bd95cSBarry Smith   if (isascii || isdraw || issocket || isbinary) {
11897b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
11905cd90555SBarry Smith   } else {
119129bbc08cSBarry Smith     SETERRQ1(1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
119257b952d6SSatish Balay   }
11933a40ed3dSBarry Smith   PetscFunctionReturn(0);
119457b952d6SSatish Balay }
119557b952d6SSatish Balay 
11964a2ae208SSatish Balay #undef __FUNCT__
11974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1198e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat)
119979bdfe76SSatish Balay {
120079bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
120179bdfe76SSatish Balay   int         ierr;
120279bdfe76SSatish Balay 
1203d64ed03dSBarry Smith   PetscFunctionBegin;
1204aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1205b0a32e0cSBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%d,Cols=%d",mat->M,mat->N);
120679bdfe76SSatish Balay #endif
12078798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
12088798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
1209606d414cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
121079bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
121179bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1212aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
12130f5bd95cSBarry Smith   if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);}
121448e59246SSatish Balay #else
1215606d414cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
121648e59246SSatish Balay #endif
1217606d414cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
1218606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1219606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1220606d414cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
1221606d414cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
1222606d414cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
12236fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE)
12246fa18ffdSBarry Smith   if (baij->setvaluescopy) {ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr);}
12256fa18ffdSBarry Smith #endif
1226606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
12273a40ed3dSBarry Smith   PetscFunctionReturn(0);
122879bdfe76SSatish Balay }
122979bdfe76SSatish Balay 
12304a2ae208SSatish Balay #undef __FUNCT__
12314a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1232ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1233cee3aa6bSSatish Balay {
1234cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
123547b4a8eaSLois Curfman McInnes   int         ierr,nt;
1236cee3aa6bSSatish Balay 
1237d64ed03dSBarry Smith   PetscFunctionBegin;
1238e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1239273d9f13SBarry Smith   if (nt != A->n) {
124029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
124147b4a8eaSLois Curfman McInnes   }
1242e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1243273d9f13SBarry Smith   if (nt != A->m) {
124429bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
124547b4a8eaSLois Curfman McInnes   }
124643a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1247f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
124843a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1249f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
125043a90d84SBarry Smith   ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
12513a40ed3dSBarry Smith   PetscFunctionReturn(0);
1252cee3aa6bSSatish Balay }
1253cee3aa6bSSatish Balay 
12544a2ae208SSatish Balay #undef __FUNCT__
12554a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1256ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1257cee3aa6bSSatish Balay {
1258cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1259cee3aa6bSSatish Balay   int        ierr;
1260d64ed03dSBarry Smith 
1261d64ed03dSBarry Smith   PetscFunctionBegin;
126243a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1263f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
126443a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1265f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
12663a40ed3dSBarry Smith   PetscFunctionReturn(0);
1267cee3aa6bSSatish Balay }
1268cee3aa6bSSatish Balay 
12694a2ae208SSatish Balay #undef __FUNCT__
12704a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
12717c922b88SBarry Smith int MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1272cee3aa6bSSatish Balay {
1273cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1274cee3aa6bSSatish Balay   int         ierr;
1275cee3aa6bSSatish Balay 
1276d64ed03dSBarry Smith   PetscFunctionBegin;
1277cee3aa6bSSatish Balay   /* do nondiagonal part */
12787c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1279cee3aa6bSSatish Balay   /* send it on its way */
1280537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1281cee3aa6bSSatish Balay   /* do local part */
12827c922b88SBarry Smith   ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1283cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1284cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1285cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1286639f9d9dSBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
12873a40ed3dSBarry Smith   PetscFunctionReturn(0);
1288cee3aa6bSSatish Balay }
1289cee3aa6bSSatish Balay 
12904a2ae208SSatish Balay #undef __FUNCT__
12914a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
12927c922b88SBarry Smith int MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1293cee3aa6bSSatish Balay {
1294cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1295cee3aa6bSSatish Balay   int         ierr;
1296cee3aa6bSSatish Balay 
1297d64ed03dSBarry Smith   PetscFunctionBegin;
1298cee3aa6bSSatish Balay   /* do nondiagonal part */
12997c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1300cee3aa6bSSatish Balay   /* send it on its way */
1301537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1302cee3aa6bSSatish Balay   /* do local part */
13037c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1304cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1305cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1306cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1307537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
13083a40ed3dSBarry Smith   PetscFunctionReturn(0);
1309cee3aa6bSSatish Balay }
1310cee3aa6bSSatish Balay 
1311cee3aa6bSSatish Balay /*
1312cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1313cee3aa6bSSatish Balay    diagonal block
1314cee3aa6bSSatish Balay */
13154a2ae208SSatish Balay #undef __FUNCT__
13164a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1317ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1318cee3aa6bSSatish Balay {
1319cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
13203a40ed3dSBarry Smith   int         ierr;
1321d64ed03dSBarry Smith 
1322d64ed03dSBarry Smith   PetscFunctionBegin;
1323273d9f13SBarry Smith   if (A->M != A->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
13243a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
13253a40ed3dSBarry Smith   PetscFunctionReturn(0);
1326cee3aa6bSSatish Balay }
1327cee3aa6bSSatish Balay 
13284a2ae208SSatish Balay #undef __FUNCT__
13294a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
133087828ca2SBarry Smith int MatScale_MPIBAIJ(PetscScalar *aa,Mat A)
1331cee3aa6bSSatish Balay {
1332cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
1333cee3aa6bSSatish Balay   int         ierr;
1334d64ed03dSBarry Smith 
1335d64ed03dSBarry Smith   PetscFunctionBegin;
1336cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1337cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
13383a40ed3dSBarry Smith   PetscFunctionReturn(0);
1339cee3aa6bSSatish Balay }
1340026e39d0SSatish Balay 
13414a2ae208SSatish Balay #undef __FUNCT__
13424a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
134387828ca2SBarry Smith int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,PetscScalar **v)
1344acdf5bf4SSatish Balay {
1345acdf5bf4SSatish Balay   Mat_MPIBAIJ  *mat = (Mat_MPIBAIJ*)matin->data;
134687828ca2SBarry Smith   PetscScalar  *vworkA,*vworkB,**pvA,**pvB,*v_p;
1347acdf5bf4SSatish Balay   int          bs = mat->bs,bs2 = mat->bs2,i,ierr,*cworkA,*cworkB,**pcA,**pcB;
1348d9d09a02SSatish Balay   int          nztot,nzA,nzB,lrow,brstart = mat->rstart*bs,brend = mat->rend*bs;
1349d9d09a02SSatish Balay   int          *cmap,*idx_p,cstart = mat->cstart;
1350acdf5bf4SSatish Balay 
1351d64ed03dSBarry Smith   PetscFunctionBegin;
135229bbc08cSBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1353acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1354acdf5bf4SSatish Balay 
1355acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1356acdf5bf4SSatish Balay     /*
1357acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1358acdf5bf4SSatish Balay     */
1359acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1360bd16c2feSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1361bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1362acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1363acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1364acdf5bf4SSatish Balay     }
136587828ca2SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(int)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1366acdf5bf4SSatish Balay     mat->rowindices = (int*)(mat->rowvalues + max*bs2);
1367acdf5bf4SSatish Balay   }
1368acdf5bf4SSatish Balay 
136929bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1370d9d09a02SSatish Balay   lrow = row - brstart;
1371acdf5bf4SSatish Balay 
1372acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1373acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1374acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1375f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1376f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1377acdf5bf4SSatish Balay   nztot = nzA + nzB;
1378acdf5bf4SSatish Balay 
1379acdf5bf4SSatish Balay   cmap  = mat->garray;
1380acdf5bf4SSatish Balay   if (v  || idx) {
1381acdf5bf4SSatish Balay     if (nztot) {
1382acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1383acdf5bf4SSatish Balay       int imark = -1;
1384acdf5bf4SSatish Balay       if (v) {
1385acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1386acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1387d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1388acdf5bf4SSatish Balay           else break;
1389acdf5bf4SSatish Balay         }
1390acdf5bf4SSatish Balay         imark = i;
1391acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1392acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1393acdf5bf4SSatish Balay       }
1394acdf5bf4SSatish Balay       if (idx) {
1395acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1396acdf5bf4SSatish Balay         if (imark > -1) {
1397acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1398bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1399acdf5bf4SSatish Balay           }
1400acdf5bf4SSatish Balay         } else {
1401acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1402d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1403d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1404acdf5bf4SSatish Balay             else break;
1405acdf5bf4SSatish Balay           }
1406acdf5bf4SSatish Balay           imark = i;
1407acdf5bf4SSatish Balay         }
1408d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1409d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1410acdf5bf4SSatish Balay       }
1411d64ed03dSBarry Smith     } else {
1412d212a18eSSatish Balay       if (idx) *idx = 0;
1413d212a18eSSatish Balay       if (v)   *v   = 0;
1414d212a18eSSatish Balay     }
1415acdf5bf4SSatish Balay   }
1416acdf5bf4SSatish Balay   *nz = nztot;
1417f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1418f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
14193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1420acdf5bf4SSatish Balay }
1421acdf5bf4SSatish Balay 
14224a2ae208SSatish Balay #undef __FUNCT__
14234a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
142487828ca2SBarry Smith int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,PetscScalar **v)
1425acdf5bf4SSatish Balay {
1426acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1427d64ed03dSBarry Smith 
1428d64ed03dSBarry Smith   PetscFunctionBegin;
1429acdf5bf4SSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
143029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1431acdf5bf4SSatish Balay   }
1432acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14333a40ed3dSBarry Smith   PetscFunctionReturn(0);
1434acdf5bf4SSatish Balay }
1435acdf5bf4SSatish Balay 
14364a2ae208SSatish Balay #undef __FUNCT__
14374a2ae208SSatish Balay #define __FUNCT__ "MatGetBlockSize_MPIBAIJ"
1438ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs)
14395a838052SSatish Balay {
14405a838052SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1441d64ed03dSBarry Smith 
1442d64ed03dSBarry Smith   PetscFunctionBegin;
14435a838052SSatish Balay   *bs = baij->bs;
14443a40ed3dSBarry Smith   PetscFunctionReturn(0);
14455a838052SSatish Balay }
14465a838052SSatish Balay 
14474a2ae208SSatish Balay #undef __FUNCT__
14484a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1449ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A)
145058667388SSatish Balay {
145158667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data;
145258667388SSatish Balay   int         ierr;
1453d64ed03dSBarry Smith 
1454d64ed03dSBarry Smith   PetscFunctionBegin;
145558667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
145658667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
14573a40ed3dSBarry Smith   PetscFunctionReturn(0);
145858667388SSatish Balay }
14590ac07820SSatish Balay 
14604a2ae208SSatish Balay #undef __FUNCT__
14614a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1462ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14630ac07820SSatish Balay {
14644e220ebcSLois Curfman McInnes   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data;
14654e220ebcSLois Curfman McInnes   Mat         A = a->A,B = a->B;
14667d57db60SLois Curfman McInnes   int         ierr;
1467329f5518SBarry Smith   PetscReal   isend[5],irecv[5];
14680ac07820SSatish Balay 
1469d64ed03dSBarry Smith   PetscFunctionBegin;
1470f6275e2eSBarry Smith   info->block_size     = (PetscReal)a->bs;
14714e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
14720e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1473de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
14744e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
14750e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1476de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
14770ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14784e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14794e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14804e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14814e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14824e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14830ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1484d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr);
14854e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14864e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14874e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14884e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14894e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14900ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1491d7d1e502SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr);
14924e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14934e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14944e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14954e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14964e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1497d41123aaSBarry Smith   } else {
149829bbc08cSBarry Smith     SETERRQ1(1,"Unknown MatInfoType argument %d",flag);
14990ac07820SSatish Balay   }
1500f6275e2eSBarry Smith   info->rows_global       = (PetscReal)A->M;
1501f6275e2eSBarry Smith   info->columns_global    = (PetscReal)A->N;
1502f6275e2eSBarry Smith   info->rows_local        = (PetscReal)A->m;
1503f6275e2eSBarry Smith   info->columns_local     = (PetscReal)A->N;
15044e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
15054e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
15064e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
15073a40ed3dSBarry Smith   PetscFunctionReturn(0);
15080ac07820SSatish Balay }
15090ac07820SSatish Balay 
15104a2ae208SSatish Balay #undef __FUNCT__
15114a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1512ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op)
151358667388SSatish Balay {
151458667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
151598305bb5SBarry Smith   int         ierr;
151658667388SSatish Balay 
1517d64ed03dSBarry Smith   PetscFunctionBegin;
151812c028f9SKris Buschelman   switch (op) {
151912c028f9SKris Buschelman   case MAT_NO_NEW_NONZERO_LOCATIONS:
152012c028f9SKris Buschelman   case MAT_YES_NEW_NONZERO_LOCATIONS:
152112c028f9SKris Buschelman   case MAT_COLUMNS_UNSORTED:
152212c028f9SKris Buschelman   case MAT_COLUMNS_SORTED:
152312c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
152412c028f9SKris Buschelman   case MAT_KEEP_ZEROED_ROWS:
152512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
152698305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
152798305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
152812c028f9SKris Buschelman     break;
152912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
15307c922b88SBarry Smith     a->roworiented = PETSC_TRUE;
153198305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
153298305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
153312c028f9SKris Buschelman     break;
153412c028f9SKris Buschelman   case MAT_ROWS_SORTED:
153512c028f9SKris Buschelman   case MAT_ROWS_UNSORTED:
153612c028f9SKris Buschelman   case MAT_YES_NEW_DIAGONALS:
1537d03495bdSKris Buschelman   case MAT_USE_SINGLE_PRECISION_SOLVES:
1538b0a32e0cSBarry Smith     PetscLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
153912c028f9SKris Buschelman     break;
154012c028f9SKris Buschelman   case MAT_COLUMN_ORIENTED:
15417c922b88SBarry Smith     a->roworiented = PETSC_FALSE;
154298305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
154398305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
154412c028f9SKris Buschelman     break;
154512c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
15467c922b88SBarry Smith     a->donotstash = PETSC_TRUE;
154712c028f9SKris Buschelman     break;
154812c028f9SKris Buschelman   case MAT_NO_NEW_DIAGONALS:
154929bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS");
155012c028f9SKris Buschelman     break;
155112c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
15527c922b88SBarry Smith     a->ht_flag = PETSC_TRUE;
155312c028f9SKris Buschelman     break;
155412c028f9SKris Buschelman   default:
155529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_SUP,"unknown option");
155612c028f9SKris Buschelman     break;
1557d64ed03dSBarry Smith   }
15583a40ed3dSBarry Smith   PetscFunctionReturn(0);
155958667388SSatish Balay }
156058667388SSatish Balay 
15614a2ae208SSatish Balay #undef __FUNCT__
15624a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1563ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout)
15640ac07820SSatish Balay {
15650ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data;
15660ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15670ac07820SSatish Balay   Mat         B;
1568273d9f13SBarry Smith   int         ierr,M=A->M,N=A->N,*ai,*aj,i,*rvals,j,k,col;
15690ac07820SSatish Balay   int         bs=baij->bs,mbs=baij->mbs;
15703eda8832SBarry Smith   MatScalar   *a;
15710ac07820SSatish Balay 
1572d64ed03dSBarry Smith   PetscFunctionBegin;
157329bbc08cSBarry Smith   if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1574273d9f13SBarry Smith   ierr = MatCreateMPIBAIJ(A->comm,baij->bs,A->n,A->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);CHKERRQ(ierr);
15750ac07820SSatish Balay 
15760ac07820SSatish Balay   /* copy over the A part */
15770ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
15780ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
157982502324SSatish Balay   ierr = PetscMalloc(bs*sizeof(int),&rvals);CHKERRQ(ierr);
15800ac07820SSatish Balay 
15810ac07820SSatish Balay   for (i=0; i<mbs; i++) {
15820ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15830ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
15840ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15850ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
15860ac07820SSatish Balay       for (k=0; k<bs; k++) {
158793fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15880ac07820SSatish Balay         col++; a += bs;
15890ac07820SSatish Balay       }
15900ac07820SSatish Balay     }
15910ac07820SSatish Balay   }
15920ac07820SSatish Balay   /* copy over the B part */
15930ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15940ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15950ac07820SSatish Balay   for (i=0; i<mbs; i++) {
15960ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15970ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
15980ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15990ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
16000ac07820SSatish Balay       for (k=0; k<bs; k++) {
160193fea6afSBarry Smith         ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
16020ac07820SSatish Balay         col++; a += bs;
16030ac07820SSatish Balay       }
16040ac07820SSatish Balay     }
16050ac07820SSatish Balay   }
1606606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
16070ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16080ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16090ac07820SSatish Balay 
16107c922b88SBarry Smith   if (matout) {
16110ac07820SSatish Balay     *matout = B;
16120ac07820SSatish Balay   } else {
1613273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
16140ac07820SSatish Balay   }
16153a40ed3dSBarry Smith   PetscFunctionReturn(0);
16160ac07820SSatish Balay }
16170e95ebc0SSatish Balay 
16184a2ae208SSatish Balay #undef __FUNCT__
16194a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
162036c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
16210e95ebc0SSatish Balay {
162236c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
162336c4a09eSSatish Balay   Mat         a = baij->A,b = baij->B;
16240e95ebc0SSatish Balay   int         ierr,s1,s2,s3;
16250e95ebc0SSatish Balay 
1626d64ed03dSBarry Smith   PetscFunctionBegin;
162736c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
162836c4a09eSSatish Balay   if (rr) {
162936c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
163029bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
163136c4a09eSSatish Balay     /* Overlap communication with computation. */
163236c4a09eSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
163336c4a09eSSatish Balay   }
16340e95ebc0SSatish Balay   if (ll) {
16350e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
163629bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1637a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
16380e95ebc0SSatish Balay   }
163936c4a09eSSatish Balay   /* scale  the diagonal block */
164036c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
164136c4a09eSSatish Balay 
164236c4a09eSSatish Balay   if (rr) {
164336c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
164436c4a09eSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
1645a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
164636c4a09eSSatish Balay   }
164736c4a09eSSatish Balay 
16483a40ed3dSBarry Smith   PetscFunctionReturn(0);
16490e95ebc0SSatish Balay }
16500e95ebc0SSatish Balay 
16514a2ae208SSatish Balay #undef __FUNCT__
16524a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
165387828ca2SBarry Smith int MatZeroRows_MPIBAIJ(Mat A,IS is,PetscScalar *diag)
16540ac07820SSatish Balay {
16550ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
16560ac07820SSatish Balay   int            i,ierr,N,*rows,*owners = l->rowners,size = l->size;
165735d8aa7fSBarry Smith   int            *procs,*nprocs,j,idx,nsends,*work,row;
16580ac07820SSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
16590ac07820SSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1660a07cd24cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
16610ac07820SSatish Balay   MPI_Comm       comm = A->comm;
16620ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
16630ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
16640ac07820SSatish Balay   IS             istmp;
166535d8aa7fSBarry Smith   PetscTruth     found;
16660ac07820SSatish Balay 
1667d64ed03dSBarry Smith   PetscFunctionBegin;
1668f14a1c24SBarry Smith   ierr = ISGetLocalSize(is,&N);CHKERRQ(ierr);
16690ac07820SSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
16700ac07820SSatish Balay 
16710ac07820SSatish Balay   /*  first count number of contributors to each processor */
167282502324SSatish Balay   ierr  = PetscMalloc(2*size*sizeof(int),&nprocs);CHKERRQ(ierr);
1673549d3d68SSatish Balay   ierr  = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
1674549d3d68SSatish Balay   procs = nprocs + size;
1675b0a32e0cSBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(int),&owner);CHKERRQ(ierr); /* see note*/
16760ac07820SSatish Balay   for (i=0; i<N; i++) {
16770ac07820SSatish Balay     idx   = rows[i];
167835d8aa7fSBarry Smith     found = PETSC_FALSE;
16790ac07820SSatish Balay     for (j=0; j<size; j++) {
16800ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
168135d8aa7fSBarry Smith         nprocs[j]++; procs[j] = 1; owner[i] = j; found = PETSC_TRUE; break;
16820ac07820SSatish Balay       }
16830ac07820SSatish Balay     }
168429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
16850ac07820SSatish Balay   }
16860ac07820SSatish Balay   nsends = 0;  for (i=0; i<size; i++) { nsends += procs[i];}
16870ac07820SSatish Balay 
16880ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
168982502324SSatish Balay   ierr   = PetscMalloc(2*size*sizeof(int),&work);CHKERRQ(ierr);
16906831982aSBarry Smith   ierr   = MPI_Allreduce(nprocs,work,2*size,MPI_INT,PetscMaxSum_Op,comm);CHKERRQ(ierr);
16910ac07820SSatish Balay   nmax   = work[rank];
16926831982aSBarry Smith   nrecvs = work[size+rank];
1693606d414cSSatish Balay   ierr   = PetscFree(work);CHKERRQ(ierr);
16940ac07820SSatish Balay 
16950ac07820SSatish Balay   /* post receives:   */
1696b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int),&rvalues);CHKERRQ(ierr);
1697b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
16980ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1699ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
17000ac07820SSatish Balay   }
17010ac07820SSatish Balay 
17020ac07820SSatish Balay   /* do sends:
17030ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
17040ac07820SSatish Balay      the ith processor
17050ac07820SSatish Balay   */
1706b0a32e0cSBarry Smith   ierr = PetscMalloc((N+1)*sizeof(int),&svalues);CHKERRQ(ierr);
1707b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1708b0a32e0cSBarry Smith   ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr);
17090ac07820SSatish Balay   starts[0]  = 0;
17100ac07820SSatish Balay   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
17110ac07820SSatish Balay   for (i=0; i<N; i++) {
17120ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
17130ac07820SSatish Balay   }
17146831982aSBarry Smith   ierr = ISRestoreIndices(is,&rows);CHKERRQ(ierr);
17150ac07820SSatish Balay 
17160ac07820SSatish Balay   starts[0] = 0;
17170ac07820SSatish Balay   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[i-1];}
17180ac07820SSatish Balay   count = 0;
17190ac07820SSatish Balay   for (i=0; i<size; i++) {
17200ac07820SSatish Balay     if (procs[i]) {
1721ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
17220ac07820SSatish Balay     }
17230ac07820SSatish Balay   }
1724606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
17250ac07820SSatish Balay 
17260ac07820SSatish Balay   base = owners[rank]*bs;
17270ac07820SSatish Balay 
17280ac07820SSatish Balay   /*  wait on receives */
1729b0a32e0cSBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(int),&lens);CHKERRQ(ierr);
17300ac07820SSatish Balay   source = lens + nrecvs;
17310ac07820SSatish Balay   count  = nrecvs; slen = 0;
17320ac07820SSatish Balay   while (count) {
1733ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
17340ac07820SSatish Balay     /* unpack receives into our local space */
1735ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
17360ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
17370ac07820SSatish Balay     lens[imdex]    = n;
17380ac07820SSatish Balay     slen          += n;
17390ac07820SSatish Balay     count--;
17400ac07820SSatish Balay   }
1741606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
17420ac07820SSatish Balay 
17430ac07820SSatish Balay   /* move the data into the send scatter */
1744b0a32e0cSBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(int),&lrows);CHKERRQ(ierr);
17450ac07820SSatish Balay   count = 0;
17460ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
17470ac07820SSatish Balay     values = rvalues + i*nmax;
17480ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
17490ac07820SSatish Balay       lrows[count++] = values[j] - base;
17500ac07820SSatish Balay     }
17510ac07820SSatish Balay   }
1752606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1753606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1754606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1755606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
17560ac07820SSatish Balay 
17570ac07820SSatish Balay   /* actually zap the local rows */
1758029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
1759b0a32e0cSBarry Smith   PetscLogObjectParent(A,istmp);
1760a07cd24cSSatish Balay 
176172dacd9aSBarry Smith   /*
176272dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
176372dacd9aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
176472dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
176572dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
176672dacd9aSBarry Smith 
176772dacd9aSBarry Smith        Contributed by: Mathew Knepley
176872dacd9aSBarry Smith   */
17699c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
17706fa18ffdSBarry Smith   ierr = MatZeroRows_SeqBAIJ(l->B,istmp,0);CHKERRQ(ierr);
17719c957beeSSatish Balay   if (diag && (l->A->M == l->A->N)) {
17726fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,diag);CHKERRQ(ierr);
17739c957beeSSatish Balay   } else if (diag) {
17746fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1775fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
177629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1777fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
17786525c446SSatish Balay     }
1779a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1780a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
17813f11ea53SBarry Smith       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1782a07cd24cSSatish Balay     }
1783a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1784a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17859c957beeSSatish Balay   } else {
17866fa18ffdSBarry Smith     ierr = MatZeroRows_SeqBAIJ(l->A,istmp,0);CHKERRQ(ierr);
1787a07cd24cSSatish Balay   }
17889c957beeSSatish Balay 
17899c957beeSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1790606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1791a07cd24cSSatish Balay 
17920ac07820SSatish Balay   /* wait on sends */
17930ac07820SSatish Balay   if (nsends) {
179482502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1795ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1796606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
17970ac07820SSatish Balay   }
1798606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1799606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
18000ac07820SSatish Balay 
18013a40ed3dSBarry Smith   PetscFunctionReturn(0);
18020ac07820SSatish Balay }
180372dacd9aSBarry Smith 
18044a2ae208SSatish Balay #undef __FUNCT__
18054a2ae208SSatish Balay #define __FUNCT__ "MatPrintHelp_MPIBAIJ"
1806ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A)
1807ba4ca20aSSatish Balay {
1808ba4ca20aSSatish Balay   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*)A->data;
180925fdafccSSatish Balay   MPI_Comm    comm = A->comm;
1810133cdb44SSatish Balay   static int  called = 0;
18113a40ed3dSBarry Smith   int         ierr;
1812ba4ca20aSSatish Balay 
1813d64ed03dSBarry Smith   PetscFunctionBegin;
18143a40ed3dSBarry Smith   if (!a->rank) {
18153a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
181625fdafccSSatish Balay   }
181725fdafccSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1818d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1819d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
18203a40ed3dSBarry Smith   PetscFunctionReturn(0);
1821ba4ca20aSSatish Balay }
18220ac07820SSatish Balay 
18234a2ae208SSatish Balay #undef __FUNCT__
18244a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1825ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A)
1826bb5a7306SBarry Smith {
1827bb5a7306SBarry Smith   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*)A->data;
1828bb5a7306SBarry Smith   int         ierr;
1829d64ed03dSBarry Smith 
1830d64ed03dSBarry Smith   PetscFunctionBegin;
1831bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
18323a40ed3dSBarry Smith   PetscFunctionReturn(0);
1833bb5a7306SBarry Smith }
1834bb5a7306SBarry Smith 
18352e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
18360ac07820SSatish Balay 
18374a2ae208SSatish Balay #undef __FUNCT__
18384a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
18397fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
18407fc3c18eSBarry Smith {
18417fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
18427fc3c18eSBarry Smith   Mat         a,b,c,d;
18437fc3c18eSBarry Smith   PetscTruth  flg;
18447fc3c18eSBarry Smith   int         ierr;
18457fc3c18eSBarry Smith 
18467fc3c18eSBarry Smith   PetscFunctionBegin;
1847273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg);CHKERRQ(ierr);
1848273d9f13SBarry Smith   if (!flg) SETERRQ(PETSC_ERR_ARG_INCOMP,"Matrices must be same type");
18497fc3c18eSBarry Smith   a = matA->A; b = matA->B;
18507fc3c18eSBarry Smith   c = matB->A; d = matB->B;
18517fc3c18eSBarry Smith 
18527fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
18537fc3c18eSBarry Smith   if (flg == PETSC_TRUE) {
18547fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
18557fc3c18eSBarry Smith   }
18567fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr);
18577fc3c18eSBarry Smith   PetscFunctionReturn(0);
18587fc3c18eSBarry Smith }
18597fc3c18eSBarry Smith 
1860273d9f13SBarry Smith 
18614a2ae208SSatish Balay #undef __FUNCT__
18624a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1863273d9f13SBarry Smith int MatSetUpPreallocation_MPIBAIJ(Mat A)
1864273d9f13SBarry Smith {
1865273d9f13SBarry Smith   int        ierr;
1866273d9f13SBarry Smith 
1867273d9f13SBarry Smith   PetscFunctionBegin;
1868273d9f13SBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,1,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1869273d9f13SBarry Smith   PetscFunctionReturn(0);
1870273d9f13SBarry Smith }
1871273d9f13SBarry Smith 
187279bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1873cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1874cc2dc46cSBarry Smith   MatSetValues_MPIBAIJ,
1875cc2dc46cSBarry Smith   MatGetRow_MPIBAIJ,
1876cc2dc46cSBarry Smith   MatRestoreRow_MPIBAIJ,
1877cc2dc46cSBarry Smith   MatMult_MPIBAIJ,
1878cc2dc46cSBarry Smith   MatMultAdd_MPIBAIJ,
18797c922b88SBarry Smith   MatMultTranspose_MPIBAIJ,
18807c922b88SBarry Smith   MatMultTransposeAdd_MPIBAIJ,
1881cc2dc46cSBarry Smith   0,
1882cc2dc46cSBarry Smith   0,
1883cc2dc46cSBarry Smith   0,
1884cc2dc46cSBarry Smith   0,
1885cc2dc46cSBarry Smith   0,
1886cc2dc46cSBarry Smith   0,
1887cc2dc46cSBarry Smith   0,
1888cc2dc46cSBarry Smith   MatTranspose_MPIBAIJ,
1889cc2dc46cSBarry Smith   MatGetInfo_MPIBAIJ,
18907fc3c18eSBarry Smith   MatEqual_MPIBAIJ,
1891cc2dc46cSBarry Smith   MatGetDiagonal_MPIBAIJ,
1892cc2dc46cSBarry Smith   MatDiagonalScale_MPIBAIJ,
1893cc2dc46cSBarry Smith   MatNorm_MPIBAIJ,
1894cc2dc46cSBarry Smith   MatAssemblyBegin_MPIBAIJ,
1895cc2dc46cSBarry Smith   MatAssemblyEnd_MPIBAIJ,
1896cc2dc46cSBarry Smith   0,
1897cc2dc46cSBarry Smith   MatSetOption_MPIBAIJ,
1898cc2dc46cSBarry Smith   MatZeroEntries_MPIBAIJ,
1899cc2dc46cSBarry Smith   MatZeroRows_MPIBAIJ,
1900cc2dc46cSBarry Smith   0,
1901cc2dc46cSBarry Smith   0,
1902cc2dc46cSBarry Smith   0,
1903cc2dc46cSBarry Smith   0,
1904273d9f13SBarry Smith   MatSetUpPreallocation_MPIBAIJ,
1905273d9f13SBarry Smith   0,
1906cc2dc46cSBarry Smith   0,
1907cc2dc46cSBarry Smith   0,
1908cc2dc46cSBarry Smith   0,
19092e8a6d31SBarry Smith   MatDuplicate_MPIBAIJ,
1910cc2dc46cSBarry Smith   0,
1911cc2dc46cSBarry Smith   0,
1912cc2dc46cSBarry Smith   0,
1913cc2dc46cSBarry Smith   0,
1914cc2dc46cSBarry Smith   0,
1915cc2dc46cSBarry Smith   MatGetSubMatrices_MPIBAIJ,
1916cc2dc46cSBarry Smith   MatIncreaseOverlap_MPIBAIJ,
1917cc2dc46cSBarry Smith   MatGetValues_MPIBAIJ,
1918cc2dc46cSBarry Smith   0,
1919cc2dc46cSBarry Smith   MatPrintHelp_MPIBAIJ,
1920cc2dc46cSBarry Smith   MatScale_MPIBAIJ,
1921cc2dc46cSBarry Smith   0,
1922cc2dc46cSBarry Smith   0,
1923cc2dc46cSBarry Smith   0,
1924cc2dc46cSBarry Smith   MatGetBlockSize_MPIBAIJ,
1925cc2dc46cSBarry Smith   0,
1926cc2dc46cSBarry Smith   0,
1927cc2dc46cSBarry Smith   0,
1928cc2dc46cSBarry Smith   0,
1929cc2dc46cSBarry Smith   0,
1930cc2dc46cSBarry Smith   0,
1931cc2dc46cSBarry Smith   MatSetUnfactored_MPIBAIJ,
1932cc2dc46cSBarry Smith   0,
1933cc2dc46cSBarry Smith   MatSetValuesBlocked_MPIBAIJ,
1934cc2dc46cSBarry Smith   0,
1935f14a1c24SBarry Smith   MatDestroy_MPIBAIJ,
1936f14a1c24SBarry Smith   MatView_MPIBAIJ,
19378a124369SBarry Smith   MatGetPetscMaps_Petsc,
19387843d17aSBarry Smith   0,
19397843d17aSBarry Smith   0,
19407843d17aSBarry Smith   0,
19417843d17aSBarry Smith   0,
19427843d17aSBarry Smith   0,
19437843d17aSBarry Smith   0,
19447843d17aSBarry Smith   MatGetRowMax_MPIBAIJ};
194579bdfe76SSatish Balay 
19465ef9f2a5SBarry Smith 
1947e18c124aSSatish Balay EXTERN_C_BEGIN
19484a2ae208SSatish Balay #undef __FUNCT__
19494a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
19505ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
19515ef9f2a5SBarry Smith {
19525ef9f2a5SBarry Smith   PetscFunctionBegin;
19535ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
19545ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
19555ef9f2a5SBarry Smith   PetscFunctionReturn(0);
19565ef9f2a5SBarry Smith }
1957e18c124aSSatish Balay EXTERN_C_END
195879bdfe76SSatish Balay 
1959273d9f13SBarry Smith EXTERN_C_BEGIN
19604a2ae208SSatish Balay #undef __FUNCT__
19614a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
1962273d9f13SBarry Smith int MatCreate_MPIBAIJ(Mat B)
1963273d9f13SBarry Smith {
1964273d9f13SBarry Smith   Mat_MPIBAIJ  *b;
1965cfce73b9SSatish Balay   int          ierr;
1966273d9f13SBarry Smith   PetscTruth   flg;
1967273d9f13SBarry Smith 
1968273d9f13SBarry Smith   PetscFunctionBegin;
1969273d9f13SBarry Smith 
197082502324SSatish Balay   ierr = PetscNew(Mat_MPIBAIJ,&b);CHKERRQ(ierr);
197182502324SSatish Balay   B->data = (void*)b;
197282502324SSatish Balay 
1973273d9f13SBarry Smith   ierr    = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr);
1974273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
1975273d9f13SBarry Smith   B->mapping    = 0;
1976273d9f13SBarry Smith   B->factor     = 0;
1977273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
1978273d9f13SBarry Smith 
1979273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
1980273d9f13SBarry Smith   ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr);
1981273d9f13SBarry Smith   ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr);
1982273d9f13SBarry Smith 
1983273d9f13SBarry Smith   /* build local table of row and column ownerships */
198482502324SSatish Balay   ierr          = PetscMalloc(3*(b->size+2)*sizeof(int),&b->rowners);CHKERRQ(ierr);
1985b0a32e0cSBarry Smith   PetscLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
1986273d9f13SBarry Smith   b->cowners    = b->rowners + b->size + 2;
1987273d9f13SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
1988273d9f13SBarry Smith 
1989273d9f13SBarry Smith   /* build cache for off array entries formed */
1990273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr);
1991273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
1992273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
1993273d9f13SBarry Smith   b->garray      = PETSC_NULL;
1994273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
1995273d9f13SBarry Smith 
1996cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE)
1997273d9f13SBarry Smith   /* stuff for MatSetValues_XXX in single precision */
199864a35ccbSBarry Smith   b->setvalueslen     = 0;
1999273d9f13SBarry Smith   b->setvaluescopy    = PETSC_NULL;
2000273d9f13SBarry Smith #endif
2001273d9f13SBarry Smith 
2002273d9f13SBarry Smith   /* stuff used in block assembly */
2003273d9f13SBarry Smith   b->barray       = 0;
2004273d9f13SBarry Smith 
2005273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2006273d9f13SBarry Smith   b->lvec         = 0;
2007273d9f13SBarry Smith   b->Mvctx        = 0;
2008273d9f13SBarry Smith 
2009273d9f13SBarry Smith   /* stuff for MatGetRow() */
2010273d9f13SBarry Smith   b->rowindices   = 0;
2011273d9f13SBarry Smith   b->rowvalues    = 0;
2012273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2013273d9f13SBarry Smith 
2014273d9f13SBarry Smith   /* hash table stuff */
2015273d9f13SBarry Smith   b->ht           = 0;
2016273d9f13SBarry Smith   b->hd           = 0;
2017273d9f13SBarry Smith   b->ht_size      = 0;
2018273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2019273d9f13SBarry Smith   b->ht_fact      = 0;
2020273d9f13SBarry Smith   b->ht_total_ct  = 0;
2021273d9f13SBarry Smith   b->ht_insert_ct = 0;
2022273d9f13SBarry Smith 
2023b0a32e0cSBarry Smith   ierr = PetscOptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
2024273d9f13SBarry Smith   if (flg) {
2025f6275e2eSBarry Smith     PetscReal fact = 1.39;
2026273d9f13SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
202787828ca2SBarry Smith     ierr = PetscOptionsGetReal(PETSC_NULL,"-mat_use_hash_table",&fact,PETSC_NULL);CHKERRQ(ierr);
2028273d9f13SBarry Smith     if (fact <= 1.0) fact = 1.39;
2029273d9f13SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2030b0a32e0cSBarry Smith     PetscLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact);
2031273d9f13SBarry Smith   }
2032273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
2033273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
2034273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
2035273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
2036273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
2037273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
2038273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
2039273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
2040273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
2041273d9f13SBarry Smith   PetscFunctionReturn(0);
2042273d9f13SBarry Smith }
2043273d9f13SBarry Smith EXTERN_C_END
2044273d9f13SBarry Smith 
20454a2ae208SSatish Balay #undef __FUNCT__
20464a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
2047273d9f13SBarry Smith /*@C
2048273d9f13SBarry Smith    MatMPIBAIJSetPreallocation - Creates a sparse parallel matrix in block AIJ format
2049273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2050273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2051273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2052273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2053273d9f13SBarry Smith 
2054273d9f13SBarry Smith    Collective on Mat
2055273d9f13SBarry Smith 
2056273d9f13SBarry Smith    Input Parameters:
2057273d9f13SBarry Smith +  A - the matrix
2058273d9f13SBarry Smith .  bs   - size of blockk
2059273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2060273d9f13SBarry Smith            submatrix  (same for all local rows)
2061273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2062273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
2063273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
2064273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2065273d9f13SBarry Smith            submatrix (same for all local rows).
2066273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2067273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
2068273d9f13SBarry Smith            each block row) or PETSC_NULL.
2069273d9f13SBarry Smith 
2070273d9f13SBarry Smith    Output Parameter:
2071273d9f13SBarry Smith 
2072273d9f13SBarry Smith 
2073273d9f13SBarry Smith    Options Database Keys:
2074273d9f13SBarry Smith .   -mat_no_unroll - uses code that does not unroll the loops in the
2075273d9f13SBarry Smith                      block calculations (much slower)
2076273d9f13SBarry Smith .   -mat_block_size - size of the blocks to use
2077273d9f13SBarry Smith 
2078273d9f13SBarry Smith    Notes:
2079273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2080273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2081273d9f13SBarry Smith 
2082273d9f13SBarry Smith    Storage Information:
2083273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2084273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2085273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2086273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2087273d9f13SBarry Smith 
2088273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2089273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
2090273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
2091273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2092273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2093273d9f13SBarry Smith 
2094273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2095273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2096273d9f13SBarry Smith 
2097273d9f13SBarry Smith .vb
2098273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2099273d9f13SBarry Smith           -------------------
2100273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
2101273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
2102273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
2103273d9f13SBarry Smith           -------------------
2104273d9f13SBarry Smith .ve
2105273d9f13SBarry Smith 
2106273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2107273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2108273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2109273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2110273d9f13SBarry Smith 
2111273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2112273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2113273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2114273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2115273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2116273d9f13SBarry Smith    matrices.
2117273d9f13SBarry Smith 
2118273d9f13SBarry Smith    Level: intermediate
2119273d9f13SBarry Smith 
2120273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
2121273d9f13SBarry Smith 
2122273d9f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
2123273d9f13SBarry Smith @*/
2124273d9f13SBarry Smith int MatMPIBAIJSetPreallocation(Mat B,int bs,int d_nz,int *d_nnz,int o_nz,int *o_nnz)
2125273d9f13SBarry Smith {
2126273d9f13SBarry Smith   Mat_MPIBAIJ  *b;
2127273d9f13SBarry Smith   int          ierr,i;
2128273d9f13SBarry Smith   PetscTruth   flg2;
2129273d9f13SBarry Smith 
2130273d9f13SBarry Smith   PetscFunctionBegin;
2131273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)B,MATMPIBAIJ,&flg2);CHKERRQ(ierr);
2132273d9f13SBarry Smith   if (!flg2) PetscFunctionReturn(0);
213347a75d0bSBarry Smith 
2134273d9f13SBarry Smith   B->preallocated = PETSC_TRUE;
2135b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
2136273d9f13SBarry Smith 
2137273d9f13SBarry Smith   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2138435da068SBarry Smith   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2139435da068SBarry Smith   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
2140435da068SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %d",d_nz);
2141435da068SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %d",o_nz);
2142273d9f13SBarry Smith   if (d_nnz) {
2143273d9f13SBarry Smith   for (i=0; i<B->m/bs; i++) {
2144273d9f13SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
2145273d9f13SBarry Smith     }
2146273d9f13SBarry Smith   }
2147273d9f13SBarry Smith   if (o_nnz) {
2148273d9f13SBarry Smith     for (i=0; i<B->m/bs; i++) {
2149273d9f13SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
2150273d9f13SBarry Smith     }
2151273d9f13SBarry Smith   }
2152273d9f13SBarry Smith 
215347a75d0bSBarry Smith   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->m,&B->M);CHKERRQ(ierr);
215447a75d0bSBarry Smith   ierr = PetscSplitOwnershipBlock(B->comm,bs,&B->n,&B->N);CHKERRQ(ierr);
21558a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->m,B->M,&B->rmap);CHKERRQ(ierr);
21568a124369SBarry Smith   ierr = PetscMapCreateMPI(B->comm,B->n,B->N,&B->cmap);CHKERRQ(ierr);
215747a75d0bSBarry Smith 
2158273d9f13SBarry Smith   b = (Mat_MPIBAIJ*)B->data;
2159273d9f13SBarry Smith   b->bs  = bs;
2160273d9f13SBarry Smith   b->bs2 = bs*bs;
2161273d9f13SBarry Smith   b->mbs = B->m/bs;
2162273d9f13SBarry Smith   b->nbs = B->n/bs;
2163273d9f13SBarry Smith   b->Mbs = B->M/bs;
2164273d9f13SBarry Smith   b->Nbs = B->N/bs;
2165273d9f13SBarry Smith 
2166273d9f13SBarry Smith   ierr = MPI_Allgather(&b->mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
2167273d9f13SBarry Smith   b->rowners[0]    = 0;
2168273d9f13SBarry Smith   for (i=2; i<=b->size; i++) {
2169273d9f13SBarry Smith     b->rowners[i] += b->rowners[i-1];
2170273d9f13SBarry Smith   }
2171273d9f13SBarry Smith   b->rstart    = b->rowners[b->rank];
2172273d9f13SBarry Smith   b->rend      = b->rowners[b->rank+1];
2173273d9f13SBarry Smith 
2174273d9f13SBarry Smith   ierr = MPI_Allgather(&b->nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,B->comm);CHKERRQ(ierr);
2175273d9f13SBarry Smith   b->cowners[0] = 0;
2176273d9f13SBarry Smith   for (i=2; i<=b->size; i++) {
2177273d9f13SBarry Smith     b->cowners[i] += b->cowners[i-1];
2178273d9f13SBarry Smith   }
2179273d9f13SBarry Smith   b->cstart    = b->cowners[b->rank];
2180273d9f13SBarry Smith   b->cend      = b->cowners[b->rank+1];
2181273d9f13SBarry Smith 
2182273d9f13SBarry Smith   for (i=0; i<=b->size; i++) {
2183273d9f13SBarry Smith     b->rowners_bs[i] = b->rowners[i]*bs;
2184273d9f13SBarry Smith   }
2185273d9f13SBarry Smith   b->rstart_bs = b->rstart*bs;
2186273d9f13SBarry Smith   b->rend_bs   = b->rend*bs;
2187273d9f13SBarry Smith   b->cstart_bs = b->cstart*bs;
2188273d9f13SBarry Smith   b->cend_bs   = b->cend*bs;
2189273d9f13SBarry Smith 
2190273d9f13SBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->n,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
2191b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->A);
2192273d9f13SBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,B->m,B->N,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
2193b0a32e0cSBarry Smith   PetscLogObjectParent(B,b->B);
2194273d9f13SBarry Smith   ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr);
2195273d9f13SBarry Smith 
2196273d9f13SBarry Smith   PetscFunctionReturn(0);
2197273d9f13SBarry Smith }
2198273d9f13SBarry Smith 
21994a2ae208SSatish Balay #undef __FUNCT__
22004a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
220179bdfe76SSatish Balay /*@C
220279bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
220379bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
220479bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
220579bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
220679bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
220779bdfe76SSatish Balay 
2208db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
2209db81eaa0SLois Curfman McInnes 
221079bdfe76SSatish Balay    Input Parameters:
2211db81eaa0SLois Curfman McInnes +  comm - MPI communicator
221279bdfe76SSatish Balay .  bs   - size of blockk
221379bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
221492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
221592e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
221692e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
221792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
221892e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
2219be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
2220be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
222147a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
222279bdfe76SSatish Balay            submatrix  (same for all local rows)
222347a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
222492e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
2225db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
222647a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
222779bdfe76SSatish Balay            submatrix (same for all local rows).
222847a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
222992e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
223092e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
223179bdfe76SSatish Balay 
223279bdfe76SSatish Balay    Output Parameter:
223379bdfe76SSatish Balay .  A - the matrix
223479bdfe76SSatish Balay 
2235db81eaa0SLois Curfman McInnes    Options Database Keys:
2236db81eaa0SLois Curfman McInnes .   -mat_no_unroll - uses code that does not unroll the loops in the
2237db81eaa0SLois Curfman McInnes                      block calculations (much slower)
2238db81eaa0SLois Curfman McInnes .   -mat_block_size - size of the blocks to use
22393ffaccefSLois Curfman McInnes 
2240b259b22eSLois Curfman McInnes    Notes:
224147a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
224247a75d0bSBarry Smith 
224379bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
224479bdfe76SSatish Balay    (possibly both).
224579bdfe76SSatish Balay 
2246be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2247be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
2248be79a94dSBarry Smith 
224979bdfe76SSatish Balay    Storage Information:
225079bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
225179bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
225279bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
225379bdfe76SSatish Balay    local matrix (a rectangular submatrix).
225479bdfe76SSatish Balay 
225579bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
225679bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
225779bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
225879bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
225979bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
226079bdfe76SSatish Balay 
226179bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
226279bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
226379bdfe76SSatish Balay 
2264db81eaa0SLois Curfman McInnes .vb
2265db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
2266db81eaa0SLois Curfman McInnes           -------------------
2267db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
2268db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
2269db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
2270db81eaa0SLois Curfman McInnes           -------------------
2271db81eaa0SLois Curfman McInnes .ve
227279bdfe76SSatish Balay 
227379bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
227479bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
227579bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
227657b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
227779bdfe76SSatish Balay 
2278d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2279d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
228079bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
228192e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
228292e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
22836da5968aSLois Curfman McInnes    matrices.
228479bdfe76SSatish Balay 
2285027ccd11SLois Curfman McInnes    Level: intermediate
2286027ccd11SLois Curfman McInnes 
228792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
228879bdfe76SSatish Balay 
22893eda8832SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ()
229079bdfe76SSatish Balay @*/
2291329f5518SBarry Smith int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
229279bdfe76SSatish Balay {
2293273d9f13SBarry Smith   int ierr,size;
229479bdfe76SSatish Balay 
2295d64ed03dSBarry Smith   PetscFunctionBegin;
2296273d9f13SBarry Smith   ierr = MatCreate(comm,m,n,M,N,A);CHKERRQ(ierr);
2297d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2298273d9f13SBarry Smith   if (size > 1) {
2299273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
2300273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
2301273d9f13SBarry Smith   } else {
2302273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
2303273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
23043914022bSBarry Smith   }
23053a40ed3dSBarry Smith   PetscFunctionReturn(0);
230679bdfe76SSatish Balay }
2307026e39d0SSatish Balay 
23084a2ae208SSatish Balay #undef __FUNCT__
23094a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
23102e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
23110ac07820SSatish Balay {
23120ac07820SSatish Balay   Mat         mat;
23130ac07820SSatish Balay   Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
2314f1af5d2fSBarry Smith   int         ierr,len=0;
23150ac07820SSatish Balay 
2316d64ed03dSBarry Smith   PetscFunctionBegin;
23170ac07820SSatish Balay   *newmat       = 0;
2318273d9f13SBarry Smith   ierr = MatCreate(matin->comm,matin->m,matin->n,matin->M,matin->N,&mat);CHKERRQ(ierr);
2319273d9f13SBarry Smith   ierr = MatSetType(mat,MATMPIBAIJ);CHKERRQ(ierr);
2320273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
23210ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
2322273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
23230ac07820SSatish Balay   a->bs  = oldmat->bs;
23240ac07820SSatish Balay   a->bs2 = oldmat->bs2;
23250ac07820SSatish Balay   a->mbs = oldmat->mbs;
23260ac07820SSatish Balay   a->nbs = oldmat->nbs;
23270ac07820SSatish Balay   a->Mbs = oldmat->Mbs;
23280ac07820SSatish Balay   a->Nbs = oldmat->Nbs;
23290ac07820SSatish Balay 
23300ac07820SSatish Balay   a->rstart       = oldmat->rstart;
23310ac07820SSatish Balay   a->rend         = oldmat->rend;
23320ac07820SSatish Balay   a->cstart       = oldmat->cstart;
23330ac07820SSatish Balay   a->cend         = oldmat->cend;
23340ac07820SSatish Balay   a->size         = oldmat->size;
23350ac07820SSatish Balay   a->rank         = oldmat->rank;
2336aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2337aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2338aef5e8e0SSatish Balay   a->rowindices   = 0;
23390ac07820SSatish Balay   a->rowvalues    = 0;
23400ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
234130793edcSSatish Balay   a->barray       = 0;
23423123a43fSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
23433123a43fSSatish Balay   a->rend_bs      = oldmat->rend_bs;
23443123a43fSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
23453123a43fSSatish Balay   a->cend_bs      = oldmat->cend_bs;
23460ac07820SSatish Balay 
2347133cdb44SSatish Balay   /* hash table stuff */
2348133cdb44SSatish Balay   a->ht           = 0;
2349133cdb44SSatish Balay   a->hd           = 0;
2350133cdb44SSatish Balay   a->ht_size      = 0;
2351133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
235225fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2353133cdb44SSatish Balay   a->ht_total_ct  = 0;
2354133cdb44SSatish Balay   a->ht_insert_ct = 0;
2355133cdb44SSatish Balay 
2356549d3d68SSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
23578798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
23588798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
23590ac07820SSatish Balay   if (oldmat->colmap) {
2360aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
23610f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
236248e59246SSatish Balay #else
236382502324SSatish Balay   ierr = PetscMalloc((a->Nbs)*sizeof(int),&a->colmap);CHKERRQ(ierr);
2364b0a32e0cSBarry Smith   PetscLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2365549d3d68SSatish Balay   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
236648e59246SSatish Balay #endif
23670ac07820SSatish Balay   } else a->colmap = 0;
23680ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
236982502324SSatish Balay     ierr = PetscMalloc(len*sizeof(int),&a->garray);CHKERRQ(ierr);
2370b0a32e0cSBarry Smith     PetscLogObjectMemory(mat,len*sizeof(int));
2371549d3d68SSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
23720ac07820SSatish Balay   } else a->garray = 0;
23730ac07820SSatish Balay 
23740ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
2375b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->lvec);
23760ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2377e18c124aSSatish Balay 
2378b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->Mvctx);
23792e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
2380b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->A);
23812e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
2382b0a32e0cSBarry Smith   PetscLogObjectParent(mat,a->B);
2383b0a32e0cSBarry Smith   ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr);
23840ac07820SSatish Balay   *newmat = mat;
23853a40ed3dSBarry Smith   PetscFunctionReturn(0);
23860ac07820SSatish Balay }
238757b952d6SSatish Balay 
2388e090d566SSatish Balay #include "petscsys.h"
238957b952d6SSatish Balay 
2390273d9f13SBarry Smith EXTERN_C_BEGIN
23914a2ae208SSatish Balay #undef __FUNCT__
23924a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
2393b0a32e0cSBarry Smith int MatLoad_MPIBAIJ(PetscViewer viewer,MatType type,Mat *newmat)
239457b952d6SSatish Balay {
239557b952d6SSatish Balay   Mat          A;
239657b952d6SSatish Balay   int          i,nz,ierr,j,rstart,rend,fd;
239787828ca2SBarry Smith   PetscScalar  *vals,*buf;
239857b952d6SSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
239957b952d6SSatish Balay   MPI_Status   status;
2400cee3aa6bSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
240157b952d6SSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0,jj,*mycols,*ibuf;
2402f1af5d2fSBarry Smith   int          tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
240357b952d6SSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
240457b952d6SSatish Balay   int          dcount,kmax,k,nzcount,tmp;
240557b952d6SSatish Balay 
2406d64ed03dSBarry Smith   PetscFunctionBegin;
2407b0a32e0cSBarry Smith   ierr = PetscOptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
240857b952d6SSatish Balay 
2409d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2410d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
241157b952d6SSatish Balay   if (!rank) {
2412b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2413e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2414552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
2415d64ed03dSBarry Smith     if (header[3] < 0) {
241629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format, cannot load as MPIBAIJ");
2417d64ed03dSBarry Smith     }
24186c5fab8fSBarry Smith   }
2419d64ed03dSBarry Smith 
2420ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
242157b952d6SSatish Balay   M = header[1]; N = header[2];
242257b952d6SSatish Balay 
242329bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
242457b952d6SSatish Balay 
242557b952d6SSatish Balay   /*
242657b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
242757b952d6SSatish Balay      divisible by the blocksize
242857b952d6SSatish Balay   */
242957b952d6SSatish Balay   Mbs        = M/bs;
243057b952d6SSatish Balay   extra_rows = bs - M + bs*(Mbs);
243157b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
243257b952d6SSatish Balay   else                  Mbs++;
243357b952d6SSatish Balay   if (extra_rows &&!rank) {
2434b0a32e0cSBarry Smith     PetscLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n");
243557b952d6SSatish Balay   }
2436537820f0SBarry Smith 
243757b952d6SSatish Balay   /* determine ownership of all rows */
243857b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
243957b952d6SSatish Balay   m          = mbs*bs;
2440b0a32e0cSBarry Smith   ierr       = PetscMalloc(2*(size+2)*sizeof(int),&rowners);CHKERRQ(ierr);
2441cee3aa6bSSatish Balay   browners   = rowners + size + 1;
2442ca161407SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
244357b952d6SSatish Balay   rowners[0] = 0;
2444cee3aa6bSSatish Balay   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
2445cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
244657b952d6SSatish Balay   rstart = rowners[rank];
244757b952d6SSatish Balay   rend   = rowners[rank+1];
244857b952d6SSatish Balay 
244957b952d6SSatish Balay   /* distribute row lengths to all processors */
245082502324SSatish Balay   ierr = PetscMalloc((rend-rstart)*bs*sizeof(int),&locrowlens);CHKERRQ(ierr);
245157b952d6SSatish Balay   if (!rank) {
2452b0a32e0cSBarry Smith     ierr = PetscMalloc((M+extra_rows)*sizeof(int),&rowlengths);CHKERRQ(ierr);
2453e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
245457b952d6SSatish Balay     for (i=0; i<extra_rows; i++) rowlengths[M+i] = 1;
245582502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&sndcounts);CHKERRQ(ierr);
2456cee3aa6bSSatish Balay     for (i=0; i<size; i++) sndcounts[i] = browners[i+1] - browners[i];
2457ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2458606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2459d64ed03dSBarry Smith   } else {
2460ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
246157b952d6SSatish Balay   }
246257b952d6SSatish Balay 
246357b952d6SSatish Balay   if (!rank) {
246457b952d6SSatish Balay     /* calculate the number of nonzeros on each processor */
246582502324SSatish Balay     ierr = PetscMalloc(size*sizeof(int),&procsnz);CHKERRQ(ierr);
2466549d3d68SSatish Balay     ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
246757b952d6SSatish Balay     for (i=0; i<size; i++) {
246857b952d6SSatish Balay       for (j=rowners[i]*bs; j< rowners[i+1]*bs; j++) {
246957b952d6SSatish Balay         procsnz[i] += rowlengths[j];
247057b952d6SSatish Balay       }
247157b952d6SSatish Balay     }
2472606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
247357b952d6SSatish Balay 
247457b952d6SSatish Balay     /* determine max buffer needed and allocate it */
247557b952d6SSatish Balay     maxnz = 0;
247657b952d6SSatish Balay     for (i=0; i<size; i++) {
247757b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
247857b952d6SSatish Balay     }
247982502324SSatish Balay     ierr = PetscMalloc(maxnz*sizeof(int),&cols);CHKERRQ(ierr);
248057b952d6SSatish Balay 
248157b952d6SSatish Balay     /* read in my part of the matrix column indices  */
248257b952d6SSatish Balay     nz     = procsnz[0];
248382502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
248457b952d6SSatish Balay     mycols = ibuf;
2485cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2486e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2487cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2488cee3aa6bSSatish Balay 
248957b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
249057b952d6SSatish Balay     for (i=1; i<size-1; i++) {
249157b952d6SSatish Balay       nz   = procsnz[i];
2492e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2493ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
249457b952d6SSatish Balay     }
249557b952d6SSatish Balay     /* read in the stuff for the last proc */
249657b952d6SSatish Balay     if (size != 1) {
249757b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2498e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
249957b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
2500ca161407SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
250157b952d6SSatish Balay     }
2502606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2503d64ed03dSBarry Smith   } else {
250457b952d6SSatish Balay     /* determine buffer space needed for message */
250557b952d6SSatish Balay     nz = 0;
250657b952d6SSatish Balay     for (i=0; i<m; i++) {
250757b952d6SSatish Balay       nz += locrowlens[i];
250857b952d6SSatish Balay     }
250982502324SSatish Balay     ierr   = PetscMalloc(nz*sizeof(int),&ibuf);CHKERRQ(ierr);
251057b952d6SSatish Balay     mycols = ibuf;
251157b952d6SSatish Balay     /* receive message of column indices*/
2512ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2513ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
251429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
251557b952d6SSatish Balay   }
251657b952d6SSatish Balay 
251757b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
251882502324SSatish Balay   ierr     = PetscMalloc(2*(rend-rstart+1)*sizeof(int),&dlens);CHKERRQ(ierr);
2519cee3aa6bSSatish Balay   odlens   = dlens + (rend-rstart);
252082502324SSatish Balay   ierr     = PetscMalloc(3*Mbs*sizeof(int),&mask);CHKERRQ(ierr);
2521549d3d68SSatish Balay   ierr     = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
252257b952d6SSatish Balay   masked1  = mask    + Mbs;
252357b952d6SSatish Balay   masked2  = masked1 + Mbs;
252457b952d6SSatish Balay   rowcount = 0; nzcount = 0;
252557b952d6SSatish Balay   for (i=0; i<mbs; i++) {
252657b952d6SSatish Balay     dcount  = 0;
252757b952d6SSatish Balay     odcount = 0;
252857b952d6SSatish Balay     for (j=0; j<bs; j++) {
252957b952d6SSatish Balay       kmax = locrowlens[rowcount];
253057b952d6SSatish Balay       for (k=0; k<kmax; k++) {
253157b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
253257b952d6SSatish Balay         if (!mask[tmp]) {
253357b952d6SSatish Balay           mask[tmp] = 1;
253457b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
253557b952d6SSatish Balay           else masked1[dcount++] = tmp;
253657b952d6SSatish Balay         }
253757b952d6SSatish Balay       }
253857b952d6SSatish Balay       rowcount++;
253957b952d6SSatish Balay     }
2540cee3aa6bSSatish Balay 
254157b952d6SSatish Balay     dlens[i]  = dcount;
254257b952d6SSatish Balay     odlens[i] = odcount;
2543cee3aa6bSSatish Balay 
254457b952d6SSatish Balay     /* zero out the mask elements we set */
254557b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
254657b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
254757b952d6SSatish Balay   }
2548cee3aa6bSSatish Balay 
254957b952d6SSatish Balay   /* create our matrix */
255047a75d0bSBarry Smith   ierr = MatCreateMPIBAIJ(comm,bs,m,m,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr);
255157b952d6SSatish Balay   A = *newmat;
25526d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
255357b952d6SSatish Balay 
255457b952d6SSatish Balay   if (!rank) {
255587828ca2SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
255657b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
255757b952d6SSatish Balay     nz = procsnz[0];
255857b952d6SSatish Balay     vals = buf;
2559cee3aa6bSSatish Balay     mycols = ibuf;
2560cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2561e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2562cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2563537820f0SBarry Smith 
256457b952d6SSatish Balay     /* insert into matrix */
256557b952d6SSatish Balay     jj      = rstart*bs;
256657b952d6SSatish Balay     for (i=0; i<m; i++) {
2567b48991e4SBarry Smith       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
256857b952d6SSatish Balay       mycols += locrowlens[i];
256957b952d6SSatish Balay       vals   += locrowlens[i];
257057b952d6SSatish Balay       jj++;
257157b952d6SSatish Balay     }
257257b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
257357b952d6SSatish Balay     for (i=1; i<size-1; i++) {
257457b952d6SSatish Balay       nz   = procsnz[i];
257557b952d6SSatish Balay       vals = buf;
2576e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2577ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
257857b952d6SSatish Balay     }
257957b952d6SSatish Balay     /* the last proc */
258057b952d6SSatish Balay     if (size != 1){
258157b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2582cee3aa6bSSatish Balay       vals = buf;
2583e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
258457b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
2585ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
258657b952d6SSatish Balay     }
2587606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2588d64ed03dSBarry Smith   } else {
258957b952d6SSatish Balay     /* receive numeric values */
259087828ca2SBarry Smith     ierr = PetscMalloc(nz*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
259157b952d6SSatish Balay 
259257b952d6SSatish Balay     /* receive message of values*/
259357b952d6SSatish Balay     vals   = buf;
2594cee3aa6bSSatish Balay     mycols = ibuf;
2595ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2596ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
259729bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
259857b952d6SSatish Balay 
259957b952d6SSatish Balay     /* insert into matrix */
260057b952d6SSatish Balay     jj      = rstart*bs;
2601cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
2602b48991e4SBarry Smith       ierr    = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
260357b952d6SSatish Balay       mycols += locrowlens[i];
260457b952d6SSatish Balay       vals   += locrowlens[i];
260557b952d6SSatish Balay       jj++;
260657b952d6SSatish Balay     }
260757b952d6SSatish Balay   }
2608606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2609606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2610606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2611606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2612606d414cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2613606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
26146d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26156d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
26163a40ed3dSBarry Smith   PetscFunctionReturn(0);
261757b952d6SSatish Balay }
2618273d9f13SBarry Smith EXTERN_C_END
261957b952d6SSatish Balay 
26204a2ae208SSatish Balay #undef __FUNCT__
26214a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
2622133cdb44SSatish Balay /*@
2623133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2624133cdb44SSatish Balay 
2625133cdb44SSatish Balay    Input Parameters:
2626133cdb44SSatish Balay .  mat  - the matrix
2627133cdb44SSatish Balay .  fact - factor
2628133cdb44SSatish Balay 
2629fee21e36SBarry Smith    Collective on Mat
2630fee21e36SBarry Smith 
26318c890885SBarry Smith    Level: advanced
26328c890885SBarry Smith 
2633133cdb44SSatish Balay   Notes:
2634133cdb44SSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2635133cdb44SSatish Balay 
2636133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2637133cdb44SSatish Balay 
2638133cdb44SSatish Balay .seealso: MatSetOption()
2639133cdb44SSatish Balay @*/
2640329f5518SBarry Smith int MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
2641133cdb44SSatish Balay {
264225fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2643273d9f13SBarry Smith   int         ierr;
2644273d9f13SBarry Smith   PetscTruth  flg;
2645133cdb44SSatish Balay 
2646133cdb44SSatish Balay   PetscFunctionBegin;
2647133cdb44SSatish Balay   PetscValidHeaderSpecific(mat,MAT_COOKIE);
2648273d9f13SBarry Smith   ierr = PetscTypeCompare((PetscObject)mat,MATMPIBAIJ,&flg);CHKERRQ(ierr);
2649273d9f13SBarry Smith   if (!flg) {
265029bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Incorrect matrix type. Use MPIBAIJ only.");
2651133cdb44SSatish Balay   }
2652133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
2653133cdb44SSatish Balay   baij->ht_fact = fact;
2654133cdb44SSatish Balay   PetscFunctionReturn(0);
2655133cdb44SSatish Balay }
2656f2a5309cSSatish Balay 
26574a2ae208SSatish Balay #undef __FUNCT__
26584a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
2659435da068SBarry Smith int MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,int **colmap)
2660f2a5309cSSatish Balay {
2661f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2662f2a5309cSSatish Balay   PetscFunctionBegin;
2663f2a5309cSSatish Balay   *Ad     = a->A;
2664f2a5309cSSatish Balay   *Ao     = a->B;
2665195d93cdSBarry Smith   *colmap = a->garray;
2666f2a5309cSSatish Balay   PetscFunctionReturn(0);
2667f2a5309cSSatish Balay }
2668