1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*0f5bd95cSBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.179 1999/10/01 21:21:30 bsmith Exp bsmith $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 577ed5343SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "mat.h" I*/ 6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 779bdfe76SSatish Balay 857b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 957b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 10d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 117b2a1423SBarry Smith extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12946de2abSSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *); 13bbb85fb3SSatish Balay extern int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14bbb85fb3SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15bbb85fb3SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 16bbb85fb3SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 17bbb85fb3SSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 183b2fbd54SBarry Smith 197fc3c18eSBarry Smith EXTERN_C_BEGIN 207fc3c18eSBarry Smith #undef __FUNC__ 217fc3c18eSBarry Smith #define __FUNC__ "MatStoreValues_MPIBAIJ" 227fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 237fc3c18eSBarry Smith { 247fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 257fc3c18eSBarry Smith int ierr; 267fc3c18eSBarry Smith 277fc3c18eSBarry Smith PetscFunctionBegin; 287fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 297fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 307fc3c18eSBarry Smith PetscFunctionReturn(0); 317fc3c18eSBarry Smith } 327fc3c18eSBarry Smith EXTERN_C_END 337fc3c18eSBarry Smith 347fc3c18eSBarry Smith EXTERN_C_BEGIN 357fc3c18eSBarry Smith #undef __FUNC__ 367fc3c18eSBarry Smith #define __FUNC__ "MatRetrieveValues_MPIBAIJ" 377fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 387fc3c18eSBarry Smith { 397fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 407fc3c18eSBarry Smith int ierr; 417fc3c18eSBarry Smith 427fc3c18eSBarry Smith PetscFunctionBegin; 437fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 447fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 457fc3c18eSBarry Smith PetscFunctionReturn(0); 467fc3c18eSBarry Smith } 477fc3c18eSBarry Smith EXTERN_C_END 487fc3c18eSBarry Smith 49537820f0SBarry Smith /* 50537820f0SBarry Smith Local utility routine that creates a mapping from the global column 5157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 5257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 5357b952d6SSatish Balay length of colmap equals the global matrix length. 5457b952d6SSatish Balay */ 555615d1e5SSatish Balay #undef __FUNC__ 565615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 5757b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 5857b952d6SSatish Balay { 5957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 6057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 61dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 6257b952d6SSatish Balay 63d64ed03dSBarry Smith PetscFunctionBegin; 64aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 65*0f5bd95cSBarry Smith ierr = PetscTableCreate(baij->nbs/5,&baij->colmap);CHKERRQ(ierr); 6648e59246SSatish Balay for ( i=0; i<nbs; i++ ){ 67*0f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 6848e59246SSatish Balay } 6948e59246SSatish Balay #else 70758f045eSSatish Balay baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap); 7157b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 72549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 73928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 7448e59246SSatish Balay #endif 753a40ed3dSBarry Smith PetscFunctionReturn(0); 7657b952d6SSatish Balay } 7757b952d6SSatish Balay 7880c1aa95SSatish Balay #define CHUNKSIZE 10 7980c1aa95SSatish Balay 80f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 8180c1aa95SSatish Balay { \ 8280c1aa95SSatish Balay \ 8380c1aa95SSatish Balay brow = row/bs; \ 8480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 85ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 8680c1aa95SSatish Balay bcol = col/bs; \ 8780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 88ab26458aSBarry Smith low = 0; high = nrow; \ 89ab26458aSBarry Smith while (high-low > 3) { \ 90ab26458aSBarry Smith t = (low+high)/2; \ 91ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 92ab26458aSBarry Smith else low = t; \ 93ab26458aSBarry Smith } \ 94ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 9580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 9680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 9780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 98eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 99eada6651SSatish Balay else *bap = value; \ 100ac7a638eSSatish Balay goto a_noinsert; \ 10180c1aa95SSatish Balay } \ 10280c1aa95SSatish Balay } \ 10389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 104a8c6a408SBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 10580c1aa95SSatish Balay if (nrow >= rmax) { \ 10680c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 10780c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 10880c1aa95SSatish Balay Scalar *new_a; \ 10980c1aa95SSatish Balay \ 110a8c6a408SBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 11189280ab3SLois Curfman McInnes \ 11280c1aa95SSatish Balay /* malloc new storage space */ \ 11380c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 11480c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \ 11580c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 11680c1aa95SSatish Balay new_i = new_j + new_nz; \ 11780c1aa95SSatish Balay \ 11880c1aa95SSatish Balay /* copy over old data into new slots */ \ 11980c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 12080c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 121549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 12280c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 123549d3d68SSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 124549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 125549d3d68SSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \ 126549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 127549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 128549d3d68SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr); \ 12980c1aa95SSatish Balay /* free up old matrix storage */ \ 130606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 131606d414cSSatish Balay if (!a->singlemalloc) { \ 132606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 133606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 134606d414cSSatish Balay } \ 13580c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 13680c1aa95SSatish Balay a->singlemalloc = 1; \ 13780c1aa95SSatish Balay \ 13880c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 139ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 14080c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 14180c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 14280c1aa95SSatish Balay a->reallocs++; \ 14380c1aa95SSatish Balay a->nz++; \ 14480c1aa95SSatish Balay } \ 14580c1aa95SSatish Balay N = nrow++ - 1; \ 14680c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 14780c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 14880c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 149549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \ 15080c1aa95SSatish Balay } \ 151549d3d68SSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr); } \ 15280c1aa95SSatish Balay rp[_i] = bcol; \ 15380c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 154ac7a638eSSatish Balay a_noinsert:; \ 15580c1aa95SSatish Balay ailen[brow] = nrow; \ 15680c1aa95SSatish Balay } 15757b952d6SSatish Balay 158ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 159ac7a638eSSatish Balay { \ 160ac7a638eSSatish Balay \ 161ac7a638eSSatish Balay brow = row/bs; \ 162ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 163ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 164ac7a638eSSatish Balay bcol = col/bs; \ 165ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 166ac7a638eSSatish Balay low = 0; high = nrow; \ 167ac7a638eSSatish Balay while (high-low > 3) { \ 168ac7a638eSSatish Balay t = (low+high)/2; \ 169ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 170ac7a638eSSatish Balay else low = t; \ 171ac7a638eSSatish Balay } \ 172ac7a638eSSatish Balay for ( _i=low; _i<high; _i++ ) { \ 173ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 174ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 175ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 176ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 177ac7a638eSSatish Balay else *bap = value; \ 178ac7a638eSSatish Balay goto b_noinsert; \ 179ac7a638eSSatish Balay } \ 180ac7a638eSSatish Balay } \ 18189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 182a8c6a408SBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 183ac7a638eSSatish Balay if (nrow >= rmax) { \ 184ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 18574c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 186ac7a638eSSatish Balay Scalar *new_a; \ 187ac7a638eSSatish Balay \ 188a8c6a408SBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 18989280ab3SLois Curfman McInnes \ 190ac7a638eSSatish Balay /* malloc new storage space */ \ 19174c639caSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \ 192ac7a638eSSatish Balay new_a = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \ 193ac7a638eSSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 194ac7a638eSSatish Balay new_i = new_j + new_nz; \ 195ac7a638eSSatish Balay \ 196ac7a638eSSatish Balay /* copy over old data into new slots */ \ 197ac7a638eSSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \ 19874c639caSSatish Balay for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 199549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 200ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 201549d3d68SSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \ 202549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 203549d3d68SSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \ 204549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 205549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 206549d3d68SSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr); \ 207ac7a638eSSatish Balay /* free up old matrix storage */ \ 208606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 209606d414cSSatish Balay if (!b->singlemalloc) { \ 210606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 211606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 212606d414cSSatish Balay } \ 21374c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 21474c639caSSatish Balay b->singlemalloc = 1; \ 215ac7a638eSSatish Balay \ 216ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 217ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 21874c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 21974c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 22074c639caSSatish Balay b->reallocs++; \ 22174c639caSSatish Balay b->nz++; \ 222ac7a638eSSatish Balay } \ 223ac7a638eSSatish Balay N = nrow++ - 1; \ 224ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 225ac7a638eSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 226ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 227549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \ 228ac7a638eSSatish Balay } \ 229549d3d68SSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr);} \ 230ac7a638eSSatish Balay rp[_i] = bcol; \ 231ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 232ac7a638eSSatish Balay b_noinsert:; \ 233ac7a638eSSatish Balay bilen[brow] = nrow; \ 234ac7a638eSSatish Balay } 235ac7a638eSSatish Balay 2365615d1e5SSatish Balay #undef __FUNC__ 2375615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 238ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 23957b952d6SSatish Balay { 24057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 24157b952d6SSatish Balay Scalar value; 2424fa0d573SSatish Balay int ierr,i,j,row,col; 2434fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 2444fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 2454fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 24657b952d6SSatish Balay 247eada6651SSatish Balay /* Some Variables required in the macro */ 24880c1aa95SSatish Balay Mat A = baij->A; 24980c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 250ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 251ac7a638eSSatish Balay Scalar *aa=a->a; 252ac7a638eSSatish Balay 253ac7a638eSSatish Balay Mat B = baij->B; 254ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data; 255ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 256ac7a638eSSatish Balay Scalar *ba=b->a; 257ac7a638eSSatish Balay 258ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 259ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 260ac7a638eSSatish Balay Scalar *ap,*bap; 26180c1aa95SSatish Balay 262d64ed03dSBarry Smith PetscFunctionBegin; 26357b952d6SSatish Balay for ( i=0; i<m; i++ ) { 2645ef9f2a5SBarry Smith if (im[i] < 0) continue; 265aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 266a8c6a408SBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 267639f9d9dSBarry Smith #endif 26857b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 26957b952d6SSatish Balay row = im[i] - rstart_orig; 27057b952d6SSatish Balay for ( j=0; j<n; j++ ) { 27157b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 27257b952d6SSatish Balay col = in[j] - cstart_orig; 27357b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 274f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 27580c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 27673959e64SBarry Smith } else if (in[j] < 0) continue; 277aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 278a8c6a408SBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 279639f9d9dSBarry Smith #endif 28057b952d6SSatish Balay else { 28157b952d6SSatish Balay if (mat->was_assembled) { 282905e6a2fSBarry Smith if (!baij->colmap) { 283905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 284905e6a2fSBarry Smith } 285aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 286*0f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap, in[j]/bs + 1,&col);CHKERRQ(ierr); 287fa46199cSSatish Balay col = col - 1 + in[j]%bs; 28848e59246SSatish Balay #else 289905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 29048e59246SSatish Balay #endif 29157b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 29257b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 29357b952d6SSatish Balay col = in[j]; 2949bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2959bf004c3SSatish Balay B = baij->B; 2969bf004c3SSatish Balay b = (Mat_SeqBAIJ *) (B)->data; 2979bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2989bf004c3SSatish Balay ba=b->a; 29957b952d6SSatish Balay } 300d64ed03dSBarry Smith } else col = in[j]; 30157b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 302ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 303ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 30457b952d6SSatish Balay } 30557b952d6SSatish Balay } 306d64ed03dSBarry Smith } else { 30790f02eecSBarry Smith if ( !baij->donotstash) { 308ff2fd236SBarry Smith if (roworiented) { 3098798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 310ff2fd236SBarry Smith } else { 3118798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 31257b952d6SSatish Balay } 31357b952d6SSatish Balay } 31457b952d6SSatish Balay } 31590f02eecSBarry Smith } 3163a40ed3dSBarry Smith PetscFunctionReturn(0); 31757b952d6SSatish Balay } 31857b952d6SSatish Balay 319ab26458aSBarry Smith #undef __FUNC__ 320ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 321ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 322ab26458aSBarry Smith { 323ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 32430793edcSSatish Balay Scalar *value,*barray=baij->barray; 3257ef1d9bdSSatish Balay int ierr,i,j,ii,jj,row,col; 326ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 327ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 328ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 329ab26458aSBarry Smith 330b16ae2b1SBarry Smith PetscFunctionBegin; 33130793edcSSatish Balay if(!barray) { 33247513183SBarry Smith baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar));CHKPTRQ(barray); 33330793edcSSatish Balay } 33430793edcSSatish Balay 335ab26458aSBarry Smith if (roworiented) { 336ab26458aSBarry Smith stepval = (n-1)*bs; 337ab26458aSBarry Smith } else { 338ab26458aSBarry Smith stepval = (m-1)*bs; 339ab26458aSBarry Smith } 340ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 3415ef9f2a5SBarry Smith if (im[i] < 0) continue; 342aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3435ef9f2a5SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large, row %d max %d",im[i],baij->Mbs); 344ab26458aSBarry Smith #endif 345ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 346ab26458aSBarry Smith row = im[i] - rstart; 347ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 34815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 34915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 35015b57d14SSatish Balay barray = v + i*bs2; 35115b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 35215b57d14SSatish Balay barray = v + j*bs2; 35315b57d14SSatish Balay } else { /* Here a copy is required */ 354ab26458aSBarry Smith if (roworiented) { 355ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 356ab26458aSBarry Smith } else { 357ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 358abef11f7SSatish Balay } 35947513183SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 36047513183SBarry Smith for (jj=0; jj<bs; jj++ ) { 36130793edcSSatish Balay *barray++ = *value++; 36247513183SBarry Smith } 36347513183SBarry Smith } 36430793edcSSatish Balay barray -=bs2; 36515b57d14SSatish Balay } 366abef11f7SSatish Balay 367abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 368abef11f7SSatish Balay col = in[j] - cstart; 36930793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 370ab26458aSBarry Smith } 3715ef9f2a5SBarry Smith else if (in[j] < 0) continue; 372aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3735ef9f2a5SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large, col %d max %d",in[j],baij->Nbs);} 374ab26458aSBarry Smith #endif 375ab26458aSBarry Smith else { 376ab26458aSBarry Smith if (mat->was_assembled) { 377ab26458aSBarry Smith if (!baij->colmap) { 378ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 379ab26458aSBarry Smith } 380a5eb4965SSatish Balay 381aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 382aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 383fa46199cSSatish Balay { int data; 384*0f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 385*0f5bd95cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap"); 386fa46199cSSatish Balay } 38748e59246SSatish Balay #else 388*0f5bd95cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap"); 389a5eb4965SSatish Balay #endif 39048e59246SSatish Balay #endif 391aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 392*0f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 393fa46199cSSatish Balay col = (col - 1)/bs; 39448e59246SSatish Balay #else 395a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 39648e59246SSatish Balay #endif 397ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 398ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 399ab26458aSBarry Smith col = in[j]; 400ab26458aSBarry Smith } 401ab26458aSBarry Smith } 402ab26458aSBarry Smith else col = in[j]; 40330793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 404ab26458aSBarry Smith } 405ab26458aSBarry Smith } 406d64ed03dSBarry Smith } else { 407ab26458aSBarry Smith if (!baij->donotstash) { 408ff2fd236SBarry Smith if (roworiented) { 4098798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 410ff2fd236SBarry Smith } else { 4118798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 412ff2fd236SBarry Smith } 413abef11f7SSatish Balay } 414ab26458aSBarry Smith } 415ab26458aSBarry Smith } 4163a40ed3dSBarry Smith PetscFunctionReturn(0); 417ab26458aSBarry Smith } 4180bdbc534SSatish Balay #define HASH_KEY 0.6180339887 419c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 420c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 421c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4225615d1e5SSatish Balay #undef __FUNC__ 4230bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT" 4240bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4250bdbc534SSatish Balay { 4260bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 4270bdbc534SSatish Balay int ierr,i,j,row,col; 4280bdbc534SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 429c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 430c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 431c2760754SSatish Balay double tmp; 432b9e4cc15SSatish Balay Scalar ** HD = baij->hd,value; 433aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4344a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4354a15367fSSatish Balay #endif 4360bdbc534SSatish Balay 4370bdbc534SSatish Balay PetscFunctionBegin; 4380bdbc534SSatish Balay 4390bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 440aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4410bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 4420bdbc534SSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4430bdbc534SSatish Balay #endif 4440bdbc534SSatish Balay row = im[i]; 445c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4460bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4470bdbc534SSatish Balay col = in[j]; 4480bdbc534SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 4490bdbc534SSatish Balay /* Look up into the Hash Table */ 450c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 451c2760754SSatish Balay h1 = HASH(size,key,tmp); 4520bdbc534SSatish Balay 453c2760754SSatish Balay 454c2760754SSatish Balay idx = h1; 455aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 456187ce0cbSSatish Balay insert_ct++; 457187ce0cbSSatish Balay total_ct++; 458187ce0cbSSatish Balay if (HT[idx] != key) { 459187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 460187ce0cbSSatish Balay if (idx == size) { 461187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 462187ce0cbSSatish Balay if (idx == h1) { 463187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 464187ce0cbSSatish Balay } 465187ce0cbSSatish Balay } 466187ce0cbSSatish Balay } 467187ce0cbSSatish Balay #else 468c2760754SSatish Balay if (HT[idx] != key) { 469c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 470c2760754SSatish Balay if (idx == size) { 471c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 472c2760754SSatish Balay if (idx == h1) { 473c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 474c2760754SSatish Balay } 475c2760754SSatish Balay } 476c2760754SSatish Balay } 477187ce0cbSSatish Balay #endif 478c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 479c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 480c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4810bdbc534SSatish Balay } 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay if (!baij->donotstash) { 484ff2fd236SBarry Smith if (roworiented) { 4858798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 486ff2fd236SBarry Smith } else { 4878798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 4880bdbc534SSatish Balay } 4890bdbc534SSatish Balay } 4900bdbc534SSatish Balay } 4910bdbc534SSatish Balay } 492aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 493187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 494187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 495187ce0cbSSatish Balay #endif 4960bdbc534SSatish Balay PetscFunctionReturn(0); 4970bdbc534SSatish Balay } 4980bdbc534SSatish Balay 4990bdbc534SSatish Balay #undef __FUNC__ 5000bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT" 5010bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 5020bdbc534SSatish Balay { 5030bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 5048798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 5050bdbc534SSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 506b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 507c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 508c2760754SSatish Balay double tmp; 509187ce0cbSSatish Balay Scalar ** HD = baij->hd,*value,*v_t,*baij_a; 510aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5114a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5124a15367fSSatish Balay #endif 5130bdbc534SSatish Balay 514d0a41580SSatish Balay PetscFunctionBegin; 515d0a41580SSatish Balay 5160bdbc534SSatish Balay if (roworiented) { 5170bdbc534SSatish Balay stepval = (n-1)*bs; 5180bdbc534SSatish Balay } else { 5190bdbc534SSatish Balay stepval = (m-1)*bs; 5200bdbc534SSatish Balay } 5210bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 522aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5230bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 5240bdbc534SSatish Balay if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 5250bdbc534SSatish Balay #endif 5260bdbc534SSatish Balay row = im[i]; 527187ce0cbSSatish Balay v_t = v + i*bs2; 528c2760754SSatish Balay if (row >= rstart && row < rend) { 5290bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 5300bdbc534SSatish Balay col = in[j]; 5310bdbc534SSatish Balay 5320bdbc534SSatish Balay /* Look up into the Hash Table */ 533c2760754SSatish Balay key = row*Nbs+col+1; 534c2760754SSatish Balay h1 = HASH(size,key,tmp); 5350bdbc534SSatish Balay 536c2760754SSatish Balay idx = h1; 537aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 538187ce0cbSSatish Balay total_ct++; 539187ce0cbSSatish Balay insert_ct++; 540187ce0cbSSatish Balay if (HT[idx] != key) { 541187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 542187ce0cbSSatish Balay if (idx == size) { 543187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 544187ce0cbSSatish Balay if (idx == h1) { 545187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 546187ce0cbSSatish Balay } 547187ce0cbSSatish Balay } 548187ce0cbSSatish Balay } 549187ce0cbSSatish Balay #else 550c2760754SSatish Balay if (HT[idx] != key) { 551c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 552c2760754SSatish Balay if (idx == size) { 553c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 554c2760754SSatish Balay if (idx == h1) { 555c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 556c2760754SSatish Balay } 557c2760754SSatish Balay } 558c2760754SSatish Balay } 559187ce0cbSSatish Balay #endif 560c2760754SSatish Balay baij_a = HD[idx]; 5610bdbc534SSatish Balay if (roworiented) { 562c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 563187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 564187ce0cbSSatish Balay value = v_t; 565187ce0cbSSatish Balay v_t += bs; 566fef45726SSatish Balay if (addv == ADD_VALUES) { 567c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 568c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 569fef45726SSatish Balay baij_a[jj] += *value++; 570b4cc0f5aSSatish Balay } 571b4cc0f5aSSatish Balay } 572fef45726SSatish Balay } else { 573c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 574c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 575fef45726SSatish Balay baij_a[jj] = *value++; 576fef45726SSatish Balay } 577fef45726SSatish Balay } 578fef45726SSatish Balay } 5790bdbc534SSatish Balay } else { 5800bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 581fef45726SSatish Balay if (addv == ADD_VALUES) { 582b4cc0f5aSSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 5830bdbc534SSatish Balay for ( jj=0; jj<bs; jj++ ) { 584fef45726SSatish Balay baij_a[jj] += *value++; 585fef45726SSatish Balay } 586fef45726SSatish Balay } 587fef45726SSatish Balay } else { 588fef45726SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 589fef45726SSatish Balay for ( jj=0; jj<bs; jj++ ) { 590fef45726SSatish Balay baij_a[jj] = *value++; 591fef45726SSatish Balay } 592b4cc0f5aSSatish Balay } 5930bdbc534SSatish Balay } 5940bdbc534SSatish Balay } 5950bdbc534SSatish Balay } 5960bdbc534SSatish Balay } else { 5970bdbc534SSatish Balay if (!baij->donotstash) { 5980bdbc534SSatish Balay if (roworiented) { 5998798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6000bdbc534SSatish Balay } else { 6018798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6020bdbc534SSatish Balay } 6030bdbc534SSatish Balay } 6040bdbc534SSatish Balay } 6050bdbc534SSatish Balay } 606aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 607187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 608187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 609187ce0cbSSatish Balay #endif 6100bdbc534SSatish Balay PetscFunctionReturn(0); 6110bdbc534SSatish Balay } 612133cdb44SSatish Balay 6130bdbc534SSatish Balay #undef __FUNC__ 6145615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 615ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 616d6de1c52SSatish Balay { 617d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 618d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 61948e59246SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col,data; 620d6de1c52SSatish Balay 621133cdb44SSatish Balay PetscFunctionBegin; 622d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 623a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 624a8c6a408SBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 625d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 626d6de1c52SSatish Balay row = idxm[i] - bsrstart; 627d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 628a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 629a8c6a408SBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 630d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 631d6de1c52SSatish Balay col = idxn[j] - bscstart; 63298dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 633d64ed03dSBarry Smith } else { 634905e6a2fSBarry Smith if (!baij->colmap) { 635905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 636905e6a2fSBarry Smith } 637aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 638*0f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 639fa46199cSSatish Balay data --; 64048e59246SSatish Balay #else 64148e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 64248e59246SSatish Balay #endif 64348e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 644d9d09a02SSatish Balay else { 64548e59246SSatish Balay col = data + idxn[j]%bs; 64698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 647d6de1c52SSatish Balay } 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay } 650d64ed03dSBarry Smith } else { 651a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 652d6de1c52SSatish Balay } 653d6de1c52SSatish Balay } 6543a40ed3dSBarry Smith PetscFunctionReturn(0); 655d6de1c52SSatish Balay } 656d6de1c52SSatish Balay 6575615d1e5SSatish Balay #undef __FUNC__ 6585615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 659ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 660d6de1c52SSatish Balay { 661d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 662d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 663acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 664d6de1c52SSatish Balay double sum = 0.0; 665d6de1c52SSatish Balay Scalar *v; 666d6de1c52SSatish Balay 667d64ed03dSBarry Smith PetscFunctionBegin; 668d6de1c52SSatish Balay if (baij->size == 1) { 669d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 670d6de1c52SSatish Balay } else { 671d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 672d6de1c52SSatish Balay v = amat->a; 673d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 674aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 675e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 676d6de1c52SSatish Balay #else 677d6de1c52SSatish Balay sum += (*v)*(*v); v++; 678d6de1c52SSatish Balay #endif 679d6de1c52SSatish Balay } 680d6de1c52SSatish Balay v = bmat->a; 681d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 682aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 683e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 684d6de1c52SSatish Balay #else 685d6de1c52SSatish Balay sum += (*v)*(*v); v++; 686d6de1c52SSatish Balay #endif 687d6de1c52SSatish Balay } 688ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 689d6de1c52SSatish Balay *norm = sqrt(*norm); 690d64ed03dSBarry Smith } else { 691e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 692d6de1c52SSatish Balay } 693d64ed03dSBarry Smith } 6943a40ed3dSBarry Smith PetscFunctionReturn(0); 695d6de1c52SSatish Balay } 69657b952d6SSatish Balay 697bd7f49f5SSatish Balay 698fef45726SSatish Balay /* 699fef45726SSatish Balay Creates the hash table, and sets the table 700fef45726SSatish Balay This table is created only once. 701fef45726SSatish Balay If new entried need to be added to the matrix 702fef45726SSatish Balay then the hash table has to be destroyed and 703fef45726SSatish Balay recreated. 704fef45726SSatish Balay */ 705fef45726SSatish Balay #undef __FUNC__ 706fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private" 707d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor) 708596b8d2eSBarry Smith { 709596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 710596b8d2eSBarry Smith Mat A = baij->A, B=baij->B; 711596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data; 7120bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 713549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 714187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 715fef45726SSatish Balay int *HT,key; 7160bdbc534SSatish Balay Scalar **HD; 717c2760754SSatish Balay double tmp; 718aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 7194a15367fSSatish Balay int ct=0,max=0; 7204a15367fSSatish Balay #endif 721fef45726SSatish Balay 722d64ed03dSBarry Smith PetscFunctionBegin; 7230bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 7240bdbc534SSatish Balay size = baij->ht_size; 725fef45726SSatish Balay 7260bdbc534SSatish Balay if (baij->ht) { 7270bdbc534SSatish Balay PetscFunctionReturn(0); 728596b8d2eSBarry Smith } 7290bdbc534SSatish Balay 730fef45726SSatish Balay /* Allocate Memory for Hash Table */ 731b9e4cc15SSatish Balay baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1);CHKPTRQ(baij->hd); 732b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 733b9e4cc15SSatish Balay HD = baij->hd; 734a07cd24cSSatish Balay HT = baij->ht; 735b9e4cc15SSatish Balay 736b9e4cc15SSatish Balay 737549d3d68SSatish Balay ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr); 7380bdbc534SSatish Balay 739596b8d2eSBarry Smith 740596b8d2eSBarry Smith /* Loop Over A */ 7410bdbc534SSatish Balay for ( i=0; i<a->mbs; i++ ) { 742596b8d2eSBarry Smith for ( j=ai[i]; j<ai[i+1]; j++ ) { 7430bdbc534SSatish Balay row = i+rstart; 7440bdbc534SSatish Balay col = aj[j]+cstart; 745596b8d2eSBarry Smith 746187ce0cbSSatish Balay key = row*Nbs + col + 1; 747c2760754SSatish Balay h1 = HASH(size,key,tmp); 7480bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7490bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7500bdbc534SSatish Balay HT[(h1+k)%size] = key; 7510bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 752596b8d2eSBarry Smith break; 753aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 754187ce0cbSSatish Balay } else { 755187ce0cbSSatish Balay ct++; 756187ce0cbSSatish Balay #endif 757596b8d2eSBarry Smith } 758187ce0cbSSatish Balay } 759aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 760187ce0cbSSatish Balay if (k> max) max = k; 761187ce0cbSSatish Balay #endif 762596b8d2eSBarry Smith } 763596b8d2eSBarry Smith } 764596b8d2eSBarry Smith /* Loop Over B */ 7650bdbc534SSatish Balay for ( i=0; i<b->mbs; i++ ) { 766596b8d2eSBarry Smith for ( j=bi[i]; j<bi[i+1]; j++ ) { 7670bdbc534SSatish Balay row = i+rstart; 7680bdbc534SSatish Balay col = garray[bj[j]]; 769187ce0cbSSatish Balay key = row*Nbs + col + 1; 770c2760754SSatish Balay h1 = HASH(size,key,tmp); 7710bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7720bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7730bdbc534SSatish Balay HT[(h1+k)%size] = key; 7740bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 775596b8d2eSBarry Smith break; 776aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 777187ce0cbSSatish Balay } else { 778187ce0cbSSatish Balay ct++; 779187ce0cbSSatish Balay #endif 780596b8d2eSBarry Smith } 781187ce0cbSSatish Balay } 782aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 783187ce0cbSSatish Balay if (k> max) max = k; 784187ce0cbSSatish Balay #endif 785596b8d2eSBarry Smith } 786596b8d2eSBarry Smith } 787596b8d2eSBarry Smith 788596b8d2eSBarry Smith /* Print Summary */ 789aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 790c2760754SSatish Balay for ( i=0,j=0; i<size; i++) 791596b8d2eSBarry Smith if (HT[i]) {j++;} 792187ce0cbSSatish Balay PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n", 793187ce0cbSSatish Balay (j== 0)? 0.0:((double)(ct+j))/j,max); 794187ce0cbSSatish Balay #endif 7953a40ed3dSBarry Smith PetscFunctionReturn(0); 796596b8d2eSBarry Smith } 79757b952d6SSatish Balay 798bbb85fb3SSatish Balay #undef __FUNC__ 799bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 800bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 801bbb85fb3SSatish Balay { 802bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 803ff2fd236SBarry Smith int ierr,nstash,reallocs; 804bbb85fb3SSatish Balay InsertMode addv; 805bbb85fb3SSatish Balay 806bbb85fb3SSatish Balay PetscFunctionBegin; 807bbb85fb3SSatish Balay if (baij->donotstash) { 808bbb85fb3SSatish Balay PetscFunctionReturn(0); 809bbb85fb3SSatish Balay } 810bbb85fb3SSatish Balay 811bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 812bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 813bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 814bbb85fb3SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 815bbb85fb3SSatish Balay } 816bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 817bbb85fb3SSatish Balay 8188798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 8198798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 8208798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8215a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 8228798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8235a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 824bbb85fb3SSatish Balay PetscFunctionReturn(0); 825bbb85fb3SSatish Balay } 826bbb85fb3SSatish Balay 827bbb85fb3SSatish Balay #undef __FUNC__ 828bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 829bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 830bbb85fb3SSatish Balay { 831bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ *) mat->data; 832a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 833a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 834a2d1c673SSatish Balay int *row,*col,other_disassembled,r1,r2,r3; 835bbb85fb3SSatish Balay Scalar *val; 836bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 837bbb85fb3SSatish Balay 838bbb85fb3SSatish Balay PetscFunctionBegin; 839bbb85fb3SSatish Balay if (!baij->donotstash) { 840a2d1c673SSatish Balay while (1) { 8418798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 842a2d1c673SSatish Balay if (!flg) break; 843a2d1c673SSatish Balay 844bbb85fb3SSatish Balay for ( i=0; i<n; ) { 845bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 846bbb85fb3SSatish Balay for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; } 847bbb85fb3SSatish Balay if (j < n) ncols = j-i; 848bbb85fb3SSatish Balay else ncols = n-i; 849bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 850bbb85fb3SSatish Balay ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 851bbb85fb3SSatish Balay i = j; 852bbb85fb3SSatish Balay } 853bbb85fb3SSatish Balay } 8548798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 855a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 856a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 857a2d1c673SSatish Balay restore the original flags */ 858a2d1c673SSatish Balay r1 = baij->roworiented; 859a2d1c673SSatish Balay r2 = a->roworiented; 860a2d1c673SSatish Balay r3 = b->roworiented; 861a2d1c673SSatish Balay baij->roworiented = 0; 862a2d1c673SSatish Balay a->roworiented = 0; 863a2d1c673SSatish Balay b->roworiented = 0; 864a2d1c673SSatish Balay while (1) { 8658798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 866a2d1c673SSatish Balay if (!flg) break; 867a2d1c673SSatish Balay 868a2d1c673SSatish Balay for ( i=0; i<n; ) { 869a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 870a2d1c673SSatish Balay for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; } 871a2d1c673SSatish Balay if (j < n) ncols = j-i; 872a2d1c673SSatish Balay else ncols = n-i; 873a2d1c673SSatish Balay ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 874a2d1c673SSatish Balay i = j; 875a2d1c673SSatish Balay } 876a2d1c673SSatish Balay } 8778798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 878a2d1c673SSatish Balay baij->roworiented = r1; 879a2d1c673SSatish Balay a->roworiented = r2; 880a2d1c673SSatish Balay b->roworiented = r3; 881bbb85fb3SSatish Balay } 882bbb85fb3SSatish Balay 883bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 884bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 885bbb85fb3SSatish Balay 886bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 887bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 888bbb85fb3SSatish Balay /* 889bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 890bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 891bbb85fb3SSatish Balay */ 892bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*) baij->B->data)->nonew) { 893bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 894bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 895bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 896bbb85fb3SSatish Balay } 897bbb85fb3SSatish Balay } 898bbb85fb3SSatish Balay 899bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 900bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 901bbb85fb3SSatish Balay } 902bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 903bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 904bbb85fb3SSatish Balay 905aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 906bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 907bbb85fb3SSatish Balay PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n", 908bbb85fb3SSatish Balay ((double)baij->ht_total_ct)/baij->ht_insert_ct); 909bbb85fb3SSatish Balay baij->ht_total_ct = 0; 910bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 911bbb85fb3SSatish Balay } 912bbb85fb3SSatish Balay #endif 913bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 914bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 915bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 916bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 917bbb85fb3SSatish Balay } 918bbb85fb3SSatish Balay 919606d414cSSatish Balay if (baij->rowvalues) { 920606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 921606d414cSSatish Balay baij->rowvalues = 0; 922606d414cSSatish Balay } 923bbb85fb3SSatish Balay PetscFunctionReturn(0); 924bbb85fb3SSatish Balay } 92557b952d6SSatish Balay 926225e174dSSatish Balay /* 9275615d1e5SSatish Balay #undef __FUNC__ 9285615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 92957b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 93057b952d6SSatish Balay { 93157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 93257b952d6SSatish Balay int ierr; 93357b952d6SSatish Balay 934d64ed03dSBarry Smith PetscFunctionBegin; 93557b952d6SSatish Balay if (baij->size == 1) { 93657b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 937a8c6a408SBarry Smith } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 9383a40ed3dSBarry Smith PetscFunctionReturn(0); 93957b952d6SSatish Balay } 940225e174dSSatish Balay */ 94157b952d6SSatish Balay 9425615d1e5SSatish Balay #undef __FUNC__ 9437b2a1423SBarry Smith #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9447b2a1423SBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 94557b952d6SSatish Balay { 94657b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 94777ed5343SBarry Smith int ierr, format,bs = baij->bs, size = baij->size, rank = baij->rank; 94857b952d6SSatish Balay FILE *fd; 949*0f5bd95cSBarry Smith int isascii,isdraw; 95057b952d6SSatish Balay 951d64ed03dSBarry Smith PetscFunctionBegin; 952*0f5bd95cSBarry Smith isascii = PetscTypeCompare(viewer,ASCII_VIEWER); 953*0f5bd95cSBarry Smith isdraw = PetscTypeCompare(viewer,DRAW_VIEWER); 954*0f5bd95cSBarry Smith if (isascii) { 955d41123aaSBarry Smith ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 956639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 9574e220ebcSLois Curfman McInnes MatInfo info; 958d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 95957b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd);CHKERRQ(ierr); 960d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 961d132466eSBarry Smith ierr = PetscSequentialPhaseBegin(mat->comm,1);CHKERRQ(ierr); 96257b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 9634e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 9644e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 965d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 9664e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 967d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 9684e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 96957b952d6SSatish Balay fflush(fd); 970d132466eSBarry Smith ierr = PetscSequentialPhaseEnd(mat->comm,1);CHKERRQ(ierr); 97157b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9723a40ed3dSBarry Smith PetscFunctionReturn(0); 973d64ed03dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 974d132466eSBarry Smith ierr = PetscPrintf(mat->comm," block size is %d\n",bs);CHKERRQ(ierr); 9753a40ed3dSBarry Smith PetscFunctionReturn(0); 97657b952d6SSatish Balay } 97757b952d6SSatish Balay } 97857b952d6SSatish Balay 979*0f5bd95cSBarry Smith if (isdraw) { 98057b952d6SSatish Balay Draw draw; 98157b952d6SSatish Balay PetscTruth isnull; 98277ed5343SBarry Smith ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 9833a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 98457b952d6SSatish Balay } 98557b952d6SSatish Balay 98657b952d6SSatish Balay if (size == 1) { 98757b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 988d64ed03dSBarry Smith } else { 98957b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 99057b952d6SSatish Balay Mat A; 99157b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 99240011551SBarry Smith int M = baij->M, N = baij->N,*ai,*aj,col,i,j,k,*rvals; 99357b952d6SSatish Balay int mbs = baij->mbs; 99457b952d6SSatish Balay Scalar *a; 99557b952d6SSatish Balay 99657b952d6SSatish Balay if (!rank) { 99755843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 998d64ed03dSBarry Smith } else { 99955843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 100057b952d6SSatish Balay } 100157b952d6SSatish Balay PLogObjectParent(mat,A); 100257b952d6SSatish Balay 100357b952d6SSatish Balay /* copy over the A part */ 100457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 100557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 100657b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 100757b952d6SSatish Balay 100857b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 100957b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 101057b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 101157b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 101257b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 101357b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1014cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1015cee3aa6bSSatish Balay col++; a += bs; 101657b952d6SSatish Balay } 101757b952d6SSatish Balay } 101857b952d6SSatish Balay } 101957b952d6SSatish Balay /* copy over the B part */ 102057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 102157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 102257b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 102357b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 102457b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 102557b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 102657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 102757b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1028cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1029cee3aa6bSSatish Balay col++; a += bs; 103057b952d6SSatish Balay } 103157b952d6SSatish Balay } 103257b952d6SSatish Balay } 1033606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10346d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10356d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 103655843e3eSBarry Smith /* 103755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 103855843e3eSBarry Smith synchronized across all processors that share the Draw object 103955843e3eSBarry Smith */ 1040454a90a3SBarry Smith if (!rank || PetscTypeCompare(viewer,DRAW_VIEWER)) { 104157b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer);CHKERRQ(ierr); 104257b952d6SSatish Balay } 104357b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 104457b952d6SSatish Balay } 10453a40ed3dSBarry Smith PetscFunctionReturn(0); 104657b952d6SSatish Balay } 104757b952d6SSatish Balay 104857b952d6SSatish Balay 104957b952d6SSatish Balay 10505615d1e5SSatish Balay #undef __FUNC__ 10515615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 1052e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer) 105357b952d6SSatish Balay { 105457b952d6SSatish Balay int ierr; 1055*0f5bd95cSBarry Smith int isascii,isdraw,issocket,isbinary; 105657b952d6SSatish Balay 1057d64ed03dSBarry Smith PetscFunctionBegin; 1058*0f5bd95cSBarry Smith isascii = PetscTypeCompare(viewer,ASCII_VIEWER); 1059*0f5bd95cSBarry Smith isdraw = PetscTypeCompare(viewer,DRAW_VIEWER); 1060*0f5bd95cSBarry Smith issocket = PetscTypeCompare(viewer,SOCKET_VIEWER); 1061*0f5bd95cSBarry Smith isbinary = PetscTypeCompare(viewer,BINARY_VIEWER); 1062*0f5bd95cSBarry Smith if (isascii || isdraw || issocket || isbinary) { 10637b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10645cd90555SBarry Smith } else { 1065*0f5bd95cSBarry Smith SETERRQ1(1,1,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 106657b952d6SSatish Balay } 10673a40ed3dSBarry Smith PetscFunctionReturn(0); 106857b952d6SSatish Balay } 106957b952d6SSatish Balay 10705615d1e5SSatish Balay #undef __FUNC__ 10715615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 1072e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 107379bdfe76SSatish Balay { 107479bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 107579bdfe76SSatish Balay int ierr; 107679bdfe76SSatish Balay 1077d64ed03dSBarry Smith PetscFunctionBegin; 107898dd23e9SBarry Smith 107998dd23e9SBarry Smith if (mat->mapping) { 108098dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 108198dd23e9SBarry Smith } 108298dd23e9SBarry Smith if (mat->bmapping) { 108398dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 108498dd23e9SBarry Smith } 108561b13de0SBarry Smith if (mat->rmap) { 108661b13de0SBarry Smith ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 108761b13de0SBarry Smith } 108861b13de0SBarry Smith if (mat->cmap) { 108961b13de0SBarry Smith ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 109061b13de0SBarry Smith } 1091aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1092e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",baij->M,baij->N); 109379bdfe76SSatish Balay #endif 109479bdfe76SSatish Balay 10958798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 10968798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10978798bf22SSatish Balay 1098606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 109979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 110079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1101aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 1102*0f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 110348e59246SSatish Balay #else 1104606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 110548e59246SSatish Balay #endif 1106606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1107606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1108606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1109606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1110606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1111606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 1112606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 111379bdfe76SSatish Balay PLogObjectDestroy(mat); 111479bdfe76SSatish Balay PetscHeaderDestroy(mat); 11153a40ed3dSBarry Smith PetscFunctionReturn(0); 111679bdfe76SSatish Balay } 111779bdfe76SSatish Balay 11185615d1e5SSatish Balay #undef __FUNC__ 11195615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 1120ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1121cee3aa6bSSatish Balay { 1122cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 112347b4a8eaSLois Curfman McInnes int ierr, nt; 1124cee3aa6bSSatish Balay 1125d64ed03dSBarry Smith PetscFunctionBegin; 1126e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 112747b4a8eaSLois Curfman McInnes if (nt != a->n) { 1128a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 112947b4a8eaSLois Curfman McInnes } 1130e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 113147b4a8eaSLois Curfman McInnes if (nt != a->m) { 1132a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 113347b4a8eaSLois Curfman McInnes } 113443a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1135f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 113643a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1137f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 113843a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 11393a40ed3dSBarry Smith PetscFunctionReturn(0); 1140cee3aa6bSSatish Balay } 1141cee3aa6bSSatish Balay 11425615d1e5SSatish Balay #undef __FUNC__ 11435615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 1144ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1145cee3aa6bSSatish Balay { 1146cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1147cee3aa6bSSatish Balay int ierr; 1148d64ed03dSBarry Smith 1149d64ed03dSBarry Smith PetscFunctionBegin; 115043a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1151f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 115243a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1153f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11543a40ed3dSBarry Smith PetscFunctionReturn(0); 1155cee3aa6bSSatish Balay } 1156cee3aa6bSSatish Balay 11575615d1e5SSatish Balay #undef __FUNC__ 11585615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 1159ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 1160cee3aa6bSSatish Balay { 1161cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1162cee3aa6bSSatish Balay int ierr; 1163cee3aa6bSSatish Balay 1164d64ed03dSBarry Smith PetscFunctionBegin; 1165cee3aa6bSSatish Balay /* do nondiagonal part */ 1166f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr); 1167cee3aa6bSSatish Balay /* send it on its way */ 1168537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1169cee3aa6bSSatish Balay /* do local part */ 1170f830108cSBarry Smith ierr = (*a->A->ops->multtrans)(a->A,xx,yy);CHKERRQ(ierr); 1171cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1172cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1173cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1174639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11753a40ed3dSBarry Smith PetscFunctionReturn(0); 1176cee3aa6bSSatish Balay } 1177cee3aa6bSSatish Balay 11785615d1e5SSatish Balay #undef __FUNC__ 11795615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 1180ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1181cee3aa6bSSatish Balay { 1182cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1183cee3aa6bSSatish Balay int ierr; 1184cee3aa6bSSatish Balay 1185d64ed03dSBarry Smith PetscFunctionBegin; 1186cee3aa6bSSatish Balay /* do nondiagonal part */ 1187f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr); 1188cee3aa6bSSatish Balay /* send it on its way */ 1189537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* do local part */ 1191f830108cSBarry Smith ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1192cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1193cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1194cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1195537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11963a40ed3dSBarry Smith PetscFunctionReturn(0); 1197cee3aa6bSSatish Balay } 1198cee3aa6bSSatish Balay 1199cee3aa6bSSatish Balay /* 1200cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1201cee3aa6bSSatish Balay diagonal block 1202cee3aa6bSSatish Balay */ 12035615d1e5SSatish Balay #undef __FUNC__ 12045615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 1205ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1206cee3aa6bSSatish Balay { 1207cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 12083a40ed3dSBarry Smith int ierr; 1209d64ed03dSBarry Smith 1210d64ed03dSBarry Smith PetscFunctionBegin; 1211a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 12123a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12133a40ed3dSBarry Smith PetscFunctionReturn(0); 1214cee3aa6bSSatish Balay } 1215cee3aa6bSSatish Balay 12165615d1e5SSatish Balay #undef __FUNC__ 12175615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 1218ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1219cee3aa6bSSatish Balay { 1220cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1221cee3aa6bSSatish Balay int ierr; 1222d64ed03dSBarry Smith 1223d64ed03dSBarry Smith PetscFunctionBegin; 1224cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1225cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 12263a40ed3dSBarry Smith PetscFunctionReturn(0); 1227cee3aa6bSSatish Balay } 1228026e39d0SSatish Balay 12295615d1e5SSatish Balay #undef __FUNC__ 12305615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 1231ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 123257b952d6SSatish Balay { 123357b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1234d64ed03dSBarry Smith 1235d64ed03dSBarry Smith PetscFunctionBegin; 1236bd7f49f5SSatish Balay if (m) *m = mat->M; 1237bd7f49f5SSatish Balay if (n) *n = mat->N; 12383a40ed3dSBarry Smith PetscFunctionReturn(0); 123957b952d6SSatish Balay } 124057b952d6SSatish Balay 12415615d1e5SSatish Balay #undef __FUNC__ 12425615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 1243ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 124457b952d6SSatish Balay { 124557b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1246d64ed03dSBarry Smith 1247d64ed03dSBarry Smith PetscFunctionBegin; 1248f830108cSBarry Smith *m = mat->m; *n = mat->n; 12493a40ed3dSBarry Smith PetscFunctionReturn(0); 125057b952d6SSatish Balay } 125157b952d6SSatish Balay 12525615d1e5SSatish Balay #undef __FUNC__ 12535615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 1254ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 125557b952d6SSatish Balay { 125657b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1257d64ed03dSBarry Smith 1258d64ed03dSBarry Smith PetscFunctionBegin; 125957b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 12603a40ed3dSBarry Smith PetscFunctionReturn(0); 126157b952d6SSatish Balay } 126257b952d6SSatish Balay 12635615d1e5SSatish Balay #undef __FUNC__ 12645615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 1265acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1266acdf5bf4SSatish Balay { 1267acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1268acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1269acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 1270d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 1271d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 1272acdf5bf4SSatish Balay 1273d64ed03dSBarry Smith PetscFunctionBegin; 1274a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1275acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1276acdf5bf4SSatish Balay 1277acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1278acdf5bf4SSatish Balay /* 1279acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1280acdf5bf4SSatish Balay */ 1281acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 1282bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1283bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 1284acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1285acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1286acdf5bf4SSatish Balay } 1287549d3d68SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1288acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 1289acdf5bf4SSatish Balay } 1290acdf5bf4SSatish Balay 1291a8c6a408SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1292d9d09a02SSatish Balay lrow = row - brstart; 1293acdf5bf4SSatish Balay 1294acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1295acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1296acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1297f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1298f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1299acdf5bf4SSatish Balay nztot = nzA + nzB; 1300acdf5bf4SSatish Balay 1301acdf5bf4SSatish Balay cmap = mat->garray; 1302acdf5bf4SSatish Balay if (v || idx) { 1303acdf5bf4SSatish Balay if (nztot) { 1304acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1305acdf5bf4SSatish Balay int imark = -1; 1306acdf5bf4SSatish Balay if (v) { 1307acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1308acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1309d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1310acdf5bf4SSatish Balay else break; 1311acdf5bf4SSatish Balay } 1312acdf5bf4SSatish Balay imark = i; 1313acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 1314acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1315acdf5bf4SSatish Balay } 1316acdf5bf4SSatish Balay if (idx) { 1317acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1318acdf5bf4SSatish Balay if (imark > -1) { 1319acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 1320bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1321acdf5bf4SSatish Balay } 1322acdf5bf4SSatish Balay } else { 1323acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1324d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1325d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1326acdf5bf4SSatish Balay else break; 1327acdf5bf4SSatish Balay } 1328acdf5bf4SSatish Balay imark = i; 1329acdf5bf4SSatish Balay } 1330d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 1331d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1332acdf5bf4SSatish Balay } 1333d64ed03dSBarry Smith } else { 1334d212a18eSSatish Balay if (idx) *idx = 0; 1335d212a18eSSatish Balay if (v) *v = 0; 1336d212a18eSSatish Balay } 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay *nz = nztot; 1339f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1340f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13413a40ed3dSBarry Smith PetscFunctionReturn(0); 1342acdf5bf4SSatish Balay } 1343acdf5bf4SSatish Balay 13445615d1e5SSatish Balay #undef __FUNC__ 13455615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 1346acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1347acdf5bf4SSatish Balay { 1348acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1349d64ed03dSBarry Smith 1350d64ed03dSBarry Smith PetscFunctionBegin; 1351acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1352a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1353acdf5bf4SSatish Balay } 1354acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13553a40ed3dSBarry Smith PetscFunctionReturn(0); 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay 13585615d1e5SSatish Balay #undef __FUNC__ 13595615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 1360ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 13615a838052SSatish Balay { 13625a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1363d64ed03dSBarry Smith 1364d64ed03dSBarry Smith PetscFunctionBegin; 13655a838052SSatish Balay *bs = baij->bs; 13663a40ed3dSBarry Smith PetscFunctionReturn(0); 13675a838052SSatish Balay } 13685a838052SSatish Balay 13695615d1e5SSatish Balay #undef __FUNC__ 13705615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 1371ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 137258667388SSatish Balay { 137358667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 137458667388SSatish Balay int ierr; 1375d64ed03dSBarry Smith 1376d64ed03dSBarry Smith PetscFunctionBegin; 137758667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 137858667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13793a40ed3dSBarry Smith PetscFunctionReturn(0); 138058667388SSatish Balay } 13810ac07820SSatish Balay 13825615d1e5SSatish Balay #undef __FUNC__ 13835615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 1384ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13850ac07820SSatish Balay { 13864e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 13874e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 13887d57db60SLois Curfman McInnes int ierr; 13897d57db60SLois Curfman McInnes double isend[5], irecv[5]; 13900ac07820SSatish Balay 1391d64ed03dSBarry Smith PetscFunctionBegin; 13924e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 13934e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13940e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1395de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13964e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13970e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1398de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13990ac07820SSatish Balay if (flag == MAT_LOCAL) { 14004e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14014e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14024e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14034e220ebcSLois Curfman McInnes info->memory = isend[3]; 14044e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14050ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1406f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 14074e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14084e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14094e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14104e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14114e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14120ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1413f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 14144e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14154e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14164e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14174e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14184e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1419d41123aaSBarry Smith } else { 1420d41123aaSBarry Smith SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag); 14210ac07820SSatish Balay } 14225a5d4f66SBarry Smith info->rows_global = (double)a->M; 14235a5d4f66SBarry Smith info->columns_global = (double)a->N; 14245a5d4f66SBarry Smith info->rows_local = (double)a->m; 14255a5d4f66SBarry Smith info->columns_local = (double)a->N; 14264e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14274e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14284e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14293a40ed3dSBarry Smith PetscFunctionReturn(0); 14300ac07820SSatish Balay } 14310ac07820SSatish Balay 14325615d1e5SSatish Balay #undef __FUNC__ 14335615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 1434ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 143558667388SSatish Balay { 143658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 143798305bb5SBarry Smith int ierr; 143858667388SSatish Balay 1439d64ed03dSBarry Smith PetscFunctionBegin; 144058667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 144158667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 14426da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1443c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 14444787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 14454787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 144698305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 144798305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1448b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1449aeafbbfcSLois Curfman McInnes a->roworiented = 1; 145098305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 145198305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1452b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 14536da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 145458667388SSatish Balay op == MAT_SYMMETRIC || 145558667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1456b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 145798305bb5SBarry Smith op == MAT_USE_HASH_TABLE) { 145858667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 145998305bb5SBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 146058667388SSatish Balay a->roworiented = 0; 146198305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 146298305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 14632b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 146490f02eecSBarry Smith a->donotstash = 1; 1465d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 1466d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1467133cdb44SSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1468133cdb44SSatish Balay a->ht_flag = 1; 1469d64ed03dSBarry Smith } else { 1470d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1471d64ed03dSBarry Smith } 14723a40ed3dSBarry Smith PetscFunctionReturn(0); 147358667388SSatish Balay } 147458667388SSatish Balay 14755615d1e5SSatish Balay #undef __FUNC__ 14765615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 1477ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 14780ac07820SSatish Balay { 14790ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 14800ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14810ac07820SSatish Balay Mat B; 148240011551SBarry Smith int ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col; 14830ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 14840ac07820SSatish Balay Scalar *a; 14850ac07820SSatish Balay 1486d64ed03dSBarry Smith PetscFunctionBegin; 1487a8c6a408SBarry Smith if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 148828937c7bSBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,baij->n,baij->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 14890ac07820SSatish Balay CHKERRQ(ierr); 14900ac07820SSatish Balay 14910ac07820SSatish Balay /* copy over the A part */ 14920ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 14930ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14940ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 14950ac07820SSatish Balay 14960ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 14970ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 14980ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 14990ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15000ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 15010ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15020ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15030ac07820SSatish Balay col++; a += bs; 15040ac07820SSatish Balay } 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay /* copy over the B part */ 15080ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 15090ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15100ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 15110ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15120ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15130ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15140ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15150ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15160ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15170ac07820SSatish Balay col++; a += bs; 15180ac07820SSatish Balay } 15190ac07820SSatish Balay } 15200ac07820SSatish Balay } 1521606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15220ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15230ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15240ac07820SSatish Balay 15250ac07820SSatish Balay if (matout != PETSC_NULL) { 15260ac07820SSatish Balay *matout = B; 15270ac07820SSatish Balay } else { 1528f830108cSBarry Smith PetscOps *Abops; 1529cc2dc46cSBarry Smith MatOps Aops; 1530f830108cSBarry Smith 15310ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 1532606d414cSSatish Balay ierr = PetscFree(baij->rowners); CHKERRQ(ierr); 15330ac07820SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 15340ac07820SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1535aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 1536*0f5bd95cSBarry Smith if (baij->colmap) {ierr = PetscTableDelete(baij->colmap);CHKERRQ(ierr);} 1537b1fc9764SSatish Balay #else 1538606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 1539b1fc9764SSatish Balay #endif 1540606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1541606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1542606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1543606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1544f830108cSBarry Smith 1545f830108cSBarry Smith /* 1546f830108cSBarry Smith This is horrible, horrible code. We need to keep the 1547f830108cSBarry Smith A pointers for the bops and ops but copy everything 1548f830108cSBarry Smith else from C. 1549f830108cSBarry Smith */ 1550f830108cSBarry Smith Abops = A->bops; 1551f830108cSBarry Smith Aops = A->ops; 1552549d3d68SSatish Balay ierr = PetscMemcpy(A,B,sizeof(struct _p_Mat));CHKERRQ(ierr); 1553f830108cSBarry Smith A->bops = Abops; 1554f830108cSBarry Smith A->ops = Aops; 1555f830108cSBarry Smith 15560ac07820SSatish Balay PetscHeaderDestroy(B); 15570ac07820SSatish Balay } 15583a40ed3dSBarry Smith PetscFunctionReturn(0); 15590ac07820SSatish Balay } 15600e95ebc0SSatish Balay 15615615d1e5SSatish Balay #undef __FUNC__ 15625615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 156336c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15640e95ebc0SSatish Balay { 156536c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 156636c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 15670e95ebc0SSatish Balay int ierr,s1,s2,s3; 15680e95ebc0SSatish Balay 1569d64ed03dSBarry Smith PetscFunctionBegin; 157036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 157136c4a09eSSatish Balay if (rr) { 157236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 157336c4a09eSSatish Balay if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size"); 157436c4a09eSSatish Balay /* Overlap communication with computation. */ 157536c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 157636c4a09eSSatish Balay } 15770e95ebc0SSatish Balay if (ll) { 15780e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 157936c4a09eSSatish Balay if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size"); 158036c4a09eSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr); 15810e95ebc0SSatish Balay } 158236c4a09eSSatish Balay /* scale the diagonal block */ 158336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 158436c4a09eSSatish Balay 158536c4a09eSSatish Balay if (rr) { 158636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 158736c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 158836c4a09eSSatish Balay ierr = (*b->ops->diagonalscale)(b,0,baij->lvec);CHKERRQ(ierr); 158936c4a09eSSatish Balay } 159036c4a09eSSatish Balay 15913a40ed3dSBarry Smith PetscFunctionReturn(0); 15920e95ebc0SSatish Balay } 15930e95ebc0SSatish Balay 15945615d1e5SSatish Balay #undef __FUNC__ 15955615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 1596ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 15970ac07820SSatish Balay { 15980ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 15990ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 1600a07cd24cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 16010ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16020ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1603a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16040ac07820SSatish Balay MPI_Comm comm = A->comm; 16050ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16060ac07820SSatish Balay MPI_Status recv_status,*send_status; 16070ac07820SSatish Balay IS istmp; 16080ac07820SSatish Balay 1609d64ed03dSBarry Smith PetscFunctionBegin; 16100ac07820SSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 16110ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16120ac07820SSatish Balay 16130ac07820SSatish Balay /* first count number of contributors to each processor */ 16140ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) );CHKPTRQ(nprocs); 1615549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1616549d3d68SSatish Balay procs = nprocs + size; 16170ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 16180ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16190ac07820SSatish Balay idx = rows[i]; 16200ac07820SSatish Balay found = 0; 16210ac07820SSatish Balay for ( j=0; j<size; j++ ) { 16220ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 16230ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 16240ac07820SSatish Balay } 16250ac07820SSatish Balay } 1626a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 16270ac07820SSatish Balay } 16280ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 16290ac07820SSatish Balay 16300ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 16310ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) );CHKPTRQ(work); 1632ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 16330ac07820SSatish Balay nrecvs = work[rank]; 1634ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 16350ac07820SSatish Balay nmax = work[rank]; 1636606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 16370ac07820SSatish Balay 16380ac07820SSatish Balay /* post receives: */ 1639d64ed03dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1640d64ed03dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 16410ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 1642ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16430ac07820SSatish Balay } 16440ac07820SSatish Balay 16450ac07820SSatish Balay /* do sends: 16460ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16470ac07820SSatish Balay the ith processor 16480ac07820SSatish Balay */ 16490ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) );CHKPTRQ(svalues); 1650ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 16510ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) );CHKPTRQ(starts); 16520ac07820SSatish Balay starts[0] = 0; 16530ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16540ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16550ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16560ac07820SSatish Balay } 16570ac07820SSatish Balay ISRestoreIndices(is,&rows); 16580ac07820SSatish Balay 16590ac07820SSatish Balay starts[0] = 0; 16600ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16610ac07820SSatish Balay count = 0; 16620ac07820SSatish Balay for ( i=0; i<size; i++ ) { 16630ac07820SSatish Balay if (procs[i]) { 1664ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16650ac07820SSatish Balay } 16660ac07820SSatish Balay } 1667606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16680ac07820SSatish Balay 16690ac07820SSatish Balay base = owners[rank]*bs; 16700ac07820SSatish Balay 16710ac07820SSatish Balay /* wait on receives */ 16720ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) );CHKPTRQ(lens); 16730ac07820SSatish Balay source = lens + nrecvs; 16740ac07820SSatish Balay count = nrecvs; slen = 0; 16750ac07820SSatish Balay while (count) { 1676ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16770ac07820SSatish Balay /* unpack receives into our local space */ 1678ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 16790ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16800ac07820SSatish Balay lens[imdex] = n; 16810ac07820SSatish Balay slen += n; 16820ac07820SSatish Balay count--; 16830ac07820SSatish Balay } 1684606d414cSSatish Balay ierr = PetscFree(recv_waits); CHKERRQ(ierr); 16850ac07820SSatish Balay 16860ac07820SSatish Balay /* move the data into the send scatter */ 16870ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) );CHKPTRQ(lrows); 16880ac07820SSatish Balay count = 0; 16890ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 16900ac07820SSatish Balay values = rvalues + i*nmax; 16910ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 16920ac07820SSatish Balay lrows[count++] = values[j] - base; 16930ac07820SSatish Balay } 16940ac07820SSatish Balay } 1695606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1696606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1697606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1698606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16990ac07820SSatish Balay 17000ac07820SSatish Balay /* actually zap the local rows */ 1701029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 17020ac07820SSatish Balay PLogObjectParent(A,istmp); 1703a07cd24cSSatish Balay 170472dacd9aSBarry Smith /* 170572dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 170672dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 170772dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 170872dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 170972dacd9aSBarry Smith 171072dacd9aSBarry Smith Contributed by: Mathew Knepley 171172dacd9aSBarry Smith */ 17129c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17130ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr); 17149c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17159c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr); 17169c957beeSSatish Balay } else if (diag) { 17179c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 1718fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 1719fa46199cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1720fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17216525c446SSatish Balay } 1722a07cd24cSSatish Balay for ( i = 0; i < slen; i++ ) { 1723a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1724a07cd24cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1725a07cd24cSSatish Balay } 1726a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1727a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17289c957beeSSatish Balay } else { 17299c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 1730a07cd24cSSatish Balay } 17319c957beeSSatish Balay 17329c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1733606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1734a07cd24cSSatish Balay 17350ac07820SSatish Balay /* wait on sends */ 17360ac07820SSatish Balay if (nsends) { 1737d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1738ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1739606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17400ac07820SSatish Balay } 1741606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1742606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17430ac07820SSatish Balay 17443a40ed3dSBarry Smith PetscFunctionReturn(0); 17450ac07820SSatish Balay } 174672dacd9aSBarry Smith 17475615d1e5SSatish Balay #undef __FUNC__ 17485615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1749ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1750ba4ca20aSSatish Balay { 1751ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 175225fdafccSSatish Balay MPI_Comm comm = A->comm; 1753133cdb44SSatish Balay static int called = 0; 17543a40ed3dSBarry Smith int ierr; 1755ba4ca20aSSatish Balay 1756d64ed03dSBarry Smith PetscFunctionBegin; 17573a40ed3dSBarry Smith if (!a->rank) { 17583a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 175925fdafccSSatish Balay } 176025fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1761d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1762d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 17633a40ed3dSBarry Smith PetscFunctionReturn(0); 1764ba4ca20aSSatish Balay } 17650ac07820SSatish Balay 17665615d1e5SSatish Balay #undef __FUNC__ 17675615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1768ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1769bb5a7306SBarry Smith { 1770bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1771bb5a7306SBarry Smith int ierr; 1772d64ed03dSBarry Smith 1773d64ed03dSBarry Smith PetscFunctionBegin; 1774bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17753a40ed3dSBarry Smith PetscFunctionReturn(0); 1776bb5a7306SBarry Smith } 1777bb5a7306SBarry Smith 17782e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17790ac07820SSatish Balay 17807fc3c18eSBarry Smith #undef __FUNC__ 17817fc3c18eSBarry Smith #define __FUNC__ "MatEqual_MPIBAIJ" 17827fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A, Mat B, PetscTruth *flag) 17837fc3c18eSBarry Smith { 17847fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *) B->data,*matA = (Mat_MPIBAIJ *) A->data; 17857fc3c18eSBarry Smith Mat a, b, c, d; 17867fc3c18eSBarry Smith PetscTruth flg; 17877fc3c18eSBarry Smith int ierr; 17887fc3c18eSBarry Smith 17897fc3c18eSBarry Smith PetscFunctionBegin; 17907fc3c18eSBarry Smith if (B->type != MATMPIBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 17917fc3c18eSBarry Smith a = matA->A; b = matA->B; 17927fc3c18eSBarry Smith c = matB->A; d = matB->B; 17937fc3c18eSBarry Smith 17947fc3c18eSBarry Smith ierr = MatEqual(a, c, &flg);CHKERRQ(ierr); 17957fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 17967fc3c18eSBarry Smith ierr = MatEqual(b, d, &flg);CHKERRQ(ierr); 17977fc3c18eSBarry Smith } 17987fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr); 17997fc3c18eSBarry Smith PetscFunctionReturn(0); 18007fc3c18eSBarry Smith } 18017fc3c18eSBarry Smith 180279bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1803cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1804cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1805cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1806cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1807cc2dc46cSBarry Smith MatMult_MPIBAIJ, 1808cc2dc46cSBarry Smith MatMultAdd_MPIBAIJ, 1809cc2dc46cSBarry Smith MatMultTrans_MPIBAIJ, 1810cc2dc46cSBarry Smith MatMultTransAdd_MPIBAIJ, 1811cc2dc46cSBarry Smith 0, 1812cc2dc46cSBarry Smith 0, 1813cc2dc46cSBarry Smith 0, 1814cc2dc46cSBarry Smith 0, 1815cc2dc46cSBarry Smith 0, 1816cc2dc46cSBarry Smith 0, 1817cc2dc46cSBarry Smith 0, 1818cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 1819cc2dc46cSBarry Smith MatGetInfo_MPIBAIJ, 18207fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1821cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1822cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1823cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 1824cc2dc46cSBarry Smith MatAssemblyBegin_MPIBAIJ, 1825cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1826cc2dc46cSBarry Smith 0, 1827cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1828cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 1829cc2dc46cSBarry Smith MatZeroRows_MPIBAIJ, 1830cc2dc46cSBarry Smith 0, 1831cc2dc46cSBarry Smith 0, 1832cc2dc46cSBarry Smith 0, 1833cc2dc46cSBarry Smith 0, 1834cc2dc46cSBarry Smith MatGetSize_MPIBAIJ, 1835cc2dc46cSBarry Smith MatGetLocalSize_MPIBAIJ, 1836cc2dc46cSBarry Smith MatGetOwnershipRange_MPIBAIJ, 1837cc2dc46cSBarry Smith 0, 1838cc2dc46cSBarry Smith 0, 1839cc2dc46cSBarry Smith 0, 1840cc2dc46cSBarry Smith 0, 18412e8a6d31SBarry Smith MatDuplicate_MPIBAIJ, 1842cc2dc46cSBarry Smith 0, 1843cc2dc46cSBarry Smith 0, 1844cc2dc46cSBarry Smith 0, 1845cc2dc46cSBarry Smith 0, 1846cc2dc46cSBarry Smith 0, 1847cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1848cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1849cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1850cc2dc46cSBarry Smith 0, 1851cc2dc46cSBarry Smith MatPrintHelp_MPIBAIJ, 1852cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1853cc2dc46cSBarry Smith 0, 1854cc2dc46cSBarry Smith 0, 1855cc2dc46cSBarry Smith 0, 1856cc2dc46cSBarry Smith MatGetBlockSize_MPIBAIJ, 1857cc2dc46cSBarry Smith 0, 1858cc2dc46cSBarry Smith 0, 1859cc2dc46cSBarry Smith 0, 1860cc2dc46cSBarry Smith 0, 1861cc2dc46cSBarry Smith 0, 1862cc2dc46cSBarry Smith 0, 1863cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1864cc2dc46cSBarry Smith 0, 1865cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 1866cc2dc46cSBarry Smith 0, 1867cc2dc46cSBarry Smith 0, 1868cc2dc46cSBarry Smith 0, 1869cc2dc46cSBarry Smith MatGetMaps_Petsc}; 187079bdfe76SSatish Balay 18715ef9f2a5SBarry Smith 1872e18c124aSSatish Balay EXTERN_C_BEGIN 18735ef9f2a5SBarry Smith #undef __FUNC__ 18745ef9f2a5SBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIBAIJ" 18755ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 18765ef9f2a5SBarry Smith { 18775ef9f2a5SBarry Smith PetscFunctionBegin; 18785ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 18795ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 18805ef9f2a5SBarry Smith PetscFunctionReturn(0); 18815ef9f2a5SBarry Smith } 1882e18c124aSSatish Balay EXTERN_C_END 188379bdfe76SSatish Balay 18845615d1e5SSatish Balay #undef __FUNC__ 18855615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 188679bdfe76SSatish Balay /*@C 188779bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 188879bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 188979bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 189079bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 189179bdfe76SSatish Balay performance can be increased by more than a factor of 50. 189279bdfe76SSatish Balay 1893db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1894db81eaa0SLois Curfman McInnes 189579bdfe76SSatish Balay Input Parameters: 1896db81eaa0SLois Curfman McInnes + comm - MPI communicator 189779bdfe76SSatish Balay . bs - size of blockk 189879bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 189992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 190092e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 190192e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 190292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 190392e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 1904be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1905be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 190679bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 190779bdfe76SSatish Balay submatrix (same for all local rows) 19087fc3c18eSBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 190992e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 1910db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 191192e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 191279bdfe76SSatish Balay submatrix (same for all local rows). 19137fc3c18eSBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 191492e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 191592e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 191679bdfe76SSatish Balay 191779bdfe76SSatish Balay Output Parameter: 191879bdfe76SSatish Balay . A - the matrix 191979bdfe76SSatish Balay 1920db81eaa0SLois Curfman McInnes Options Database Keys: 1921db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 1922db81eaa0SLois Curfman McInnes block calculations (much slower) 1923db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 1924494eafd4SBarry Smith . -mat_mpi - use the parallel matrix data structures even on one processor 1925494eafd4SBarry Smith (defaults to using SeqBAIJ format on one processor) 19263ffaccefSLois Curfman McInnes 1927b259b22eSLois Curfman McInnes Notes: 192879bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 192979bdfe76SSatish Balay (possibly both). 193079bdfe76SSatish Balay 1931be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1932be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 1933be79a94dSBarry Smith 193479bdfe76SSatish Balay Storage Information: 193579bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 193679bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 193779bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 193879bdfe76SSatish Balay local matrix (a rectangular submatrix). 193979bdfe76SSatish Balay 194079bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 194179bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 194279bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 194379bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 194479bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 194579bdfe76SSatish Balay 194679bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 194779bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 194879bdfe76SSatish Balay 1949db81eaa0SLois Curfman McInnes .vb 1950db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 1951db81eaa0SLois Curfman McInnes ------------------- 1952db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 1953db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 1954db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 1955db81eaa0SLois Curfman McInnes ------------------- 1956db81eaa0SLois Curfman McInnes .ve 195779bdfe76SSatish Balay 195879bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 195979bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 196079bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 196157b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 196279bdfe76SSatish Balay 1963d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1964d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 196579bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 196692e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 196792e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 19686da5968aSLois Curfman McInnes matrices. 196979bdfe76SSatish Balay 1970027ccd11SLois Curfman McInnes Level: intermediate 1971027ccd11SLois Curfman McInnes 197292e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 197379bdfe76SSatish Balay 1974db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIAIJ() 197579bdfe76SSatish Balay @*/ 197679bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 197779bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 197879bdfe76SSatish Balay { 197979bdfe76SSatish Balay Mat B; 198079bdfe76SSatish Balay Mat_MPIBAIJ *b; 1981133cdb44SSatish Balay int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size,flg; 1982a2ab621fSBarry Smith int flag1 = 0,flag2 = 0; 198379bdfe76SSatish Balay 1984d64ed03dSBarry Smith PetscFunctionBegin; 1985962fb4a0SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1986962fb4a0SBarry Smith 1987a8c6a408SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 198836c4a09eSSatish Balay if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -1: value %d",d_nz); 198936c4a09eSSatish Balay if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -1: value %d",o_nz); 19904fdb0a08SBarry Smith if (d_nnz) { 199136c4a09eSSatish Balay for (i=0; i<m/bs; i++) { 19924fdb0a08SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 19934fdb0a08SBarry Smith } 19944fdb0a08SBarry Smith } 19954fdb0a08SBarry Smith if (o_nnz) { 199636c4a09eSSatish Balay for (i=0; i<m/bs; i++) { 19974fdb0a08SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 19984fdb0a08SBarry Smith } 19994fdb0a08SBarry Smith } 20003914022bSBarry Smith 2001d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2002494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpibaij",&flag1);CHKERRQ(ierr); 2003494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 2004494eafd4SBarry Smith if (!flag1 && !flag2 && size == 1) { 20053914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 20063914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 20073914022bSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A);CHKERRQ(ierr); 20083a40ed3dSBarry Smith PetscFunctionReturn(0); 20093914022bSBarry Smith } 20103914022bSBarry Smith 201179bdfe76SSatish Balay *A = 0; 20123f1db9ecSBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",comm,MatDestroy,MatView); 201379bdfe76SSatish Balay PLogObjectCreate(B); 201479bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ));CHKPTRQ(b); 2015549d3d68SSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2016549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 20174c50302cSBarry Smith 2018e1311b90SBarry Smith B->ops->destroy = MatDestroy_MPIBAIJ; 2019e1311b90SBarry Smith B->ops->view = MatView_MPIBAIJ; 202090f02eecSBarry Smith B->mapping = 0; 202179bdfe76SSatish Balay B->factor = 0; 202279bdfe76SSatish Balay B->assembled = PETSC_FALSE; 202379bdfe76SSatish Balay 2024e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 2025d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 2026d132466eSBarry Smith ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 202779bdfe76SSatish Balay 2028d64ed03dSBarry Smith if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 2029a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 2030d64ed03dSBarry Smith } 2031a8c6a408SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) { 2032a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 2033a8c6a408SBarry Smith } 2034a8c6a408SBarry Smith if ( N == PETSC_DECIDE && n == PETSC_DECIDE) { 2035a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified"); 2036a8c6a408SBarry Smith } 2037cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 2038cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 203979bdfe76SSatish Balay 204079bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 204179bdfe76SSatish Balay work[0] = m; work[1] = n; 204279bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 2043ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 204479bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 204579bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 204679bdfe76SSatish Balay } 204779bdfe76SSatish Balay if (m == PETSC_DECIDE) { 204879bdfe76SSatish Balay Mbs = M/bs; 2049a8c6a408SBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 205079bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 205179bdfe76SSatish Balay m = mbs*bs; 205279bdfe76SSatish Balay } 205379bdfe76SSatish Balay if (n == PETSC_DECIDE) { 205479bdfe76SSatish Balay Nbs = N/bs; 2055a8c6a408SBarry Smith if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize"); 205679bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 205779bdfe76SSatish Balay n = nbs*bs; 205879bdfe76SSatish Balay } 2059a8c6a408SBarry Smith if (mbs*bs != m || nbs*bs != n) { 2060a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize"); 2061a8c6a408SBarry Smith } 206279bdfe76SSatish Balay 206379bdfe76SSatish Balay b->m = m; B->m = m; 206479bdfe76SSatish Balay b->n = n; B->n = n; 206579bdfe76SSatish Balay b->N = N; B->N = N; 206679bdfe76SSatish Balay b->M = M; B->M = M; 206779bdfe76SSatish Balay b->bs = bs; 206879bdfe76SSatish Balay b->bs2 = bs*bs; 206979bdfe76SSatish Balay b->mbs = mbs; 207079bdfe76SSatish Balay b->nbs = nbs; 207179bdfe76SSatish Balay b->Mbs = Mbs; 207279bdfe76SSatish Balay b->Nbs = Nbs; 207379bdfe76SSatish Balay 2074c7fcc2eaSBarry Smith /* the information in the maps duplicates the information computed below, eventually 2075c7fcc2eaSBarry Smith we should remove the duplicate information that is not contained in the maps */ 2076488ecbafSBarry Smith ierr = MapCreateMPI(comm,m,M,&B->rmap);CHKERRQ(ierr); 2077488ecbafSBarry Smith ierr = MapCreateMPI(comm,n,N,&B->cmap);CHKERRQ(ierr); 2078c7fcc2eaSBarry Smith 207979bdfe76SSatish Balay /* build local table of row and column ownerships */ 2080ff2fd236SBarry Smith b->rowners = (int *) PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 2081ff2fd236SBarry Smith PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 20820ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 2083ff2fd236SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2084ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 208579bdfe76SSatish Balay b->rowners[0] = 0; 208679bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 208779bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 208879bdfe76SSatish Balay } 2089ff2fd236SBarry Smith for ( i=0; i<=b->size; i++ ) { 2090ff2fd236SBarry Smith b->rowners_bs[i] = b->rowners[i]*bs; 2091ff2fd236SBarry Smith } 209279bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 209379bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 20944fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 20954fa0d573SSatish Balay b->rend_bs = b->rend * bs; 20964fa0d573SSatish Balay 2097ca161407SBarry Smith ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 209879bdfe76SSatish Balay b->cowners[0] = 0; 209979bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 210079bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 210179bdfe76SSatish Balay } 210279bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 210379bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 21044fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 21054fa0d573SSatish Balay b->cend_bs = b->cend * bs; 210679bdfe76SSatish Balay 2107a07cd24cSSatish Balay 210879bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 2109029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 211079bdfe76SSatish Balay PLogObjectParent(B,b->A); 211179bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 2112029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 211379bdfe76SSatish Balay PLogObjectParent(B,b->B); 211479bdfe76SSatish Balay 211579bdfe76SSatish Balay /* build cache for off array entries formed */ 21168798bf22SSatish Balay ierr = MatStashCreate_Private(comm,1,&B->stash);CHKERRQ(ierr); 21178798bf22SSatish Balay ierr = MatStashCreate_Private(comm,bs,&B->bstash);CHKERRQ(ierr); 211890f02eecSBarry Smith b->donotstash = 0; 211979bdfe76SSatish Balay b->colmap = 0; 212079bdfe76SSatish Balay b->garray = 0; 212179bdfe76SSatish Balay b->roworiented = 1; 212279bdfe76SSatish Balay 212330793edcSSatish Balay /* stuff used in block assembly */ 212430793edcSSatish Balay b->barray = 0; 212530793edcSSatish Balay 212679bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 212779bdfe76SSatish Balay b->lvec = 0; 212879bdfe76SSatish Balay b->Mvctx = 0; 212979bdfe76SSatish Balay 213079bdfe76SSatish Balay /* stuff for MatGetRow() */ 213179bdfe76SSatish Balay b->rowindices = 0; 213279bdfe76SSatish Balay b->rowvalues = 0; 213379bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 213479bdfe76SSatish Balay 2135a07cd24cSSatish Balay /* hash table stuff */ 2136a07cd24cSSatish Balay b->ht = 0; 2137187ce0cbSSatish Balay b->hd = 0; 21380bdbc534SSatish Balay b->ht_size = 0; 2139133cdb44SSatish Balay b->ht_flag = 0; 214025fdafccSSatish Balay b->ht_fact = 0; 2141187ce0cbSSatish Balay b->ht_total_ct = 0; 2142187ce0cbSSatish Balay b->ht_insert_ct = 0; 2143a07cd24cSSatish Balay 214479bdfe76SSatish Balay *A = B; 2145133cdb44SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2146133cdb44SSatish Balay if (flg) { 2147133cdb44SSatish Balay double fact = 1.39; 2148133cdb44SSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 2149133cdb44SSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,&flg);CHKERRQ(ierr); 2150133cdb44SSatish Balay if (fact <= 1.0) fact = 1.39; 2151133cdb44SSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2152133cdb44SSatish Balay PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2153133cdb44SSatish Balay } 21547fc3c18eSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C", 21557fc3c18eSBarry Smith "MatStoreValues_MPIBAIJ", 21567fc3c18eSBarry Smith (void*)MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 21577fc3c18eSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C", 21587fc3c18eSBarry Smith "MatRetrieveValues_MPIBAIJ", 21597fc3c18eSBarry Smith (void*)MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 21605ef9f2a5SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C", 21615ef9f2a5SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 21625ef9f2a5SBarry Smith (void*)MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 21633a40ed3dSBarry Smith PetscFunctionReturn(0); 216479bdfe76SSatish Balay } 2165026e39d0SSatish Balay 21665615d1e5SSatish Balay #undef __FUNC__ 21672e8a6d31SBarry Smith #define __FUNC__ "MatDuplicate_MPIBAIJ" 21682e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 21690ac07820SSatish Balay { 21700ac07820SSatish Balay Mat mat; 21710ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 21720ac07820SSatish Balay int ierr, len=0, flg; 21730ac07820SSatish Balay 2174d64ed03dSBarry Smith PetscFunctionBegin; 21750ac07820SSatish Balay *newmat = 0; 21763f1db9ecSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",matin->comm,MatDestroy,MatView); 21770ac07820SSatish Balay PLogObjectCreate(mat); 21780ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ));CHKPTRQ(a); 2179549d3d68SSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2180e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIBAIJ; 2181e1311b90SBarry Smith mat->ops->view = MatView_MPIBAIJ; 21820ac07820SSatish Balay mat->factor = matin->factor; 21830ac07820SSatish Balay mat->assembled = PETSC_TRUE; 2184aef5e8e0SSatish Balay mat->insertmode = NOT_SET_VALUES; 21850ac07820SSatish Balay 21860ac07820SSatish Balay a->m = mat->m = oldmat->m; 21870ac07820SSatish Balay a->n = mat->n = oldmat->n; 21880ac07820SSatish Balay a->M = mat->M = oldmat->M; 21890ac07820SSatish Balay a->N = mat->N = oldmat->N; 21900ac07820SSatish Balay 21910ac07820SSatish Balay a->bs = oldmat->bs; 21920ac07820SSatish Balay a->bs2 = oldmat->bs2; 21930ac07820SSatish Balay a->mbs = oldmat->mbs; 21940ac07820SSatish Balay a->nbs = oldmat->nbs; 21950ac07820SSatish Balay a->Mbs = oldmat->Mbs; 21960ac07820SSatish Balay a->Nbs = oldmat->Nbs; 21970ac07820SSatish Balay 21980ac07820SSatish Balay a->rstart = oldmat->rstart; 21990ac07820SSatish Balay a->rend = oldmat->rend; 22000ac07820SSatish Balay a->cstart = oldmat->cstart; 22010ac07820SSatish Balay a->cend = oldmat->cend; 22020ac07820SSatish Balay a->size = oldmat->size; 22030ac07820SSatish Balay a->rank = oldmat->rank; 2204aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2205aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2206aef5e8e0SSatish Balay a->rowindices = 0; 22070ac07820SSatish Balay a->rowvalues = 0; 22080ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 220930793edcSSatish Balay a->barray = 0; 22103123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 22113123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 22123123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 22133123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 22140ac07820SSatish Balay 2215133cdb44SSatish Balay /* hash table stuff */ 2216133cdb44SSatish Balay a->ht = 0; 2217133cdb44SSatish Balay a->hd = 0; 2218133cdb44SSatish Balay a->ht_size = 0; 2219133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 222025fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2221133cdb44SSatish Balay a->ht_total_ct = 0; 2222133cdb44SSatish Balay a->ht_insert_ct = 0; 2223133cdb44SSatish Balay 2224133cdb44SSatish Balay 2225ff2fd236SBarry Smith a->rowners = (int *) PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 2226ff2fd236SBarry Smith PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 22270ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 2228ff2fd236SBarry Smith a->rowners_bs = a->cowners + a->size + 2; 2229549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 22308798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 22318798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 22320ac07820SSatish Balay if (oldmat->colmap) { 2233aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2234*0f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 223548e59246SSatish Balay #else 22360ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 22370ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2238549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 223948e59246SSatish Balay #endif 22400ac07820SSatish Balay } else a->colmap = 0; 22410ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 22420ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 22430ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 2244549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 22450ac07820SSatish Balay } else a->garray = 0; 22460ac07820SSatish Balay 22470ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22480ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 22490ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2250e18c124aSSatish Balay 22510ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 22522e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22530ac07820SSatish Balay PLogObjectParent(mat,a->A); 22542e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22550ac07820SSatish Balay PLogObjectParent(mat,a->B); 22560ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 2257e18c124aSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 22580ac07820SSatish Balay if (flg) { 22590ac07820SSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 22600ac07820SSatish Balay } 22610ac07820SSatish Balay *newmat = mat; 22623a40ed3dSBarry Smith PetscFunctionReturn(0); 22630ac07820SSatish Balay } 226457b952d6SSatish Balay 226557b952d6SSatish Balay #include "sys.h" 226657b952d6SSatish Balay 22675615d1e5SSatish Balay #undef __FUNC__ 22685615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 226957b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 227057b952d6SSatish Balay { 227157b952d6SSatish Balay Mat A; 227257b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 227357b952d6SSatish Balay Scalar *vals,*buf; 227457b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 227557b952d6SSatish Balay MPI_Status status; 2276cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 227757b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 227840011551SBarry Smith int flg,tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 227957b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 228057b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 228157b952d6SSatish Balay 2282d64ed03dSBarry Smith PetscFunctionBegin; 228357b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 228457b952d6SSatish Balay 2285d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2286d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 228757b952d6SSatish Balay if (!rank) { 228857b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2289e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2290a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2291d64ed03dSBarry Smith if (header[3] < 0) { 2292a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ"); 2293d64ed03dSBarry Smith } 22946c5fab8fSBarry Smith } 2295d64ed03dSBarry Smith 2296ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 229757b952d6SSatish Balay M = header[1]; N = header[2]; 229857b952d6SSatish Balay 2299a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 230057b952d6SSatish Balay 230157b952d6SSatish Balay /* 230257b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 230357b952d6SSatish Balay divisible by the blocksize 230457b952d6SSatish Balay */ 230557b952d6SSatish Balay Mbs = M/bs; 230657b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 230757b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 230857b952d6SSatish Balay else Mbs++; 230957b952d6SSatish Balay if (extra_rows &&!rank) { 2310b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 231157b952d6SSatish Balay } 2312537820f0SBarry Smith 231357b952d6SSatish Balay /* determine ownership of all rows */ 231457b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 231557b952d6SSatish Balay m = mbs * bs; 2316cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 2317cee3aa6bSSatish Balay browners = rowners + size + 1; 2318ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 231957b952d6SSatish Balay rowners[0] = 0; 2320cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 2321cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 232257b952d6SSatish Balay rstart = rowners[rank]; 232357b952d6SSatish Balay rend = rowners[rank+1]; 232457b952d6SSatish Balay 232557b952d6SSatish Balay /* distribute row lengths to all processors */ 232657b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) );CHKPTRQ(locrowlens); 232757b952d6SSatish Balay if (!rank) { 232857b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) );CHKPTRQ(rowlengths); 2329e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 233057b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 233157b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(sndcounts); 2332cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 2333ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2334606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2335d64ed03dSBarry Smith } else { 2336ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr); 233757b952d6SSatish Balay } 233857b952d6SSatish Balay 233957b952d6SSatish Balay if (!rank) { 234057b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 234157b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(procsnz); 2342549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 234357b952d6SSatish Balay for ( i=0; i<size; i++ ) { 234457b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 234557b952d6SSatish Balay procsnz[i] += rowlengths[j]; 234657b952d6SSatish Balay } 234757b952d6SSatish Balay } 2348606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 234957b952d6SSatish Balay 235057b952d6SSatish Balay /* determine max buffer needed and allocate it */ 235157b952d6SSatish Balay maxnz = 0; 235257b952d6SSatish Balay for ( i=0; i<size; i++ ) { 235357b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 235457b952d6SSatish Balay } 235557b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) );CHKPTRQ(cols); 235657b952d6SSatish Balay 235757b952d6SSatish Balay /* read in my part of the matrix column indices */ 235857b952d6SSatish Balay nz = procsnz[0]; 235957b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf); 236057b952d6SSatish Balay mycols = ibuf; 2361cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2362e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2363cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2364cee3aa6bSSatish Balay 236557b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 236657b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 236757b952d6SSatish Balay nz = procsnz[i]; 2368e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2369ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 237057b952d6SSatish Balay } 237157b952d6SSatish Balay /* read in the stuff for the last proc */ 237257b952d6SSatish Balay if ( size != 1 ) { 237357b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2374e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 237557b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 2376ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 237757b952d6SSatish Balay } 2378606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2379d64ed03dSBarry Smith } else { 238057b952d6SSatish Balay /* determine buffer space needed for message */ 238157b952d6SSatish Balay nz = 0; 238257b952d6SSatish Balay for ( i=0; i<m; i++ ) { 238357b952d6SSatish Balay nz += locrowlens[i]; 238457b952d6SSatish Balay } 238557b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf); 238657b952d6SSatish Balay mycols = ibuf; 238757b952d6SSatish Balay /* receive message of column indices*/ 2388ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2389ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2390a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 239157b952d6SSatish Balay } 239257b952d6SSatish Balay 239357b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2394cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) );CHKPTRQ(dlens); 2395cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 239657b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) );CHKPTRQ(mask); 2397549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 239857b952d6SSatish Balay masked1 = mask + Mbs; 239957b952d6SSatish Balay masked2 = masked1 + Mbs; 240057b952d6SSatish Balay rowcount = 0; nzcount = 0; 240157b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 240257b952d6SSatish Balay dcount = 0; 240357b952d6SSatish Balay odcount = 0; 240457b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 240557b952d6SSatish Balay kmax = locrowlens[rowcount]; 240657b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 240757b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 240857b952d6SSatish Balay if (!mask[tmp]) { 240957b952d6SSatish Balay mask[tmp] = 1; 241057b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 241157b952d6SSatish Balay else masked1[dcount++] = tmp; 241257b952d6SSatish Balay } 241357b952d6SSatish Balay } 241457b952d6SSatish Balay rowcount++; 241557b952d6SSatish Balay } 2416cee3aa6bSSatish Balay 241757b952d6SSatish Balay dlens[i] = dcount; 241857b952d6SSatish Balay odlens[i] = odcount; 2419cee3aa6bSSatish Balay 242057b952d6SSatish Balay /* zero out the mask elements we set */ 242157b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 242257b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 242357b952d6SSatish Balay } 2424cee3aa6bSSatish Balay 242557b952d6SSatish Balay /* create our matrix */ 2426549d3d68SSatish Balay ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 242757b952d6SSatish Balay A = *newmat; 24286d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 242957b952d6SSatish Balay 243057b952d6SSatish Balay if (!rank) { 243157b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) );CHKPTRQ(buf); 243257b952d6SSatish Balay /* read in my part of the matrix numerical values */ 243357b952d6SSatish Balay nz = procsnz[0]; 243457b952d6SSatish Balay vals = buf; 2435cee3aa6bSSatish Balay mycols = ibuf; 2436cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2437e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2438cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2439537820f0SBarry Smith 244057b952d6SSatish Balay /* insert into matrix */ 244157b952d6SSatish Balay jj = rstart*bs; 244257b952d6SSatish Balay for ( i=0; i<m; i++ ) { 244357b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 244457b952d6SSatish Balay mycols += locrowlens[i]; 244557b952d6SSatish Balay vals += locrowlens[i]; 244657b952d6SSatish Balay jj++; 244757b952d6SSatish Balay } 244857b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 244957b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 245057b952d6SSatish Balay nz = procsnz[i]; 245157b952d6SSatish Balay vals = buf; 2452e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2453ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 245457b952d6SSatish Balay } 245557b952d6SSatish Balay /* the last proc */ 245657b952d6SSatish Balay if ( size != 1 ){ 245757b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2458cee3aa6bSSatish Balay vals = buf; 2459e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 246057b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 2461ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 246257b952d6SSatish Balay } 2463606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2464d64ed03dSBarry Smith } else { 246557b952d6SSatish Balay /* receive numeric values */ 246657b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) );CHKPTRQ(buf); 246757b952d6SSatish Balay 246857b952d6SSatish Balay /* receive message of values*/ 246957b952d6SSatish Balay vals = buf; 2470cee3aa6bSSatish Balay mycols = ibuf; 2471ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2472ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2473a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 247457b952d6SSatish Balay 247557b952d6SSatish Balay /* insert into matrix */ 247657b952d6SSatish Balay jj = rstart*bs; 2477cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 247857b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 247957b952d6SSatish Balay mycols += locrowlens[i]; 248057b952d6SSatish Balay vals += locrowlens[i]; 248157b952d6SSatish Balay jj++; 248257b952d6SSatish Balay } 248357b952d6SSatish Balay } 2484606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2485606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2486606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2487606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2488606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2489606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 24906d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24916d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24923a40ed3dSBarry Smith PetscFunctionReturn(0); 249357b952d6SSatish Balay } 249457b952d6SSatish Balay 2495133cdb44SSatish Balay #undef __FUNC__ 2496133cdb44SSatish Balay #define __FUNC__ "MatMPIBAIJSetHashTableFactor" 2497133cdb44SSatish Balay /*@ 2498133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2499133cdb44SSatish Balay 2500133cdb44SSatish Balay Input Parameters: 2501133cdb44SSatish Balay . mat - the matrix 2502133cdb44SSatish Balay . fact - factor 2503133cdb44SSatish Balay 2504fee21e36SBarry Smith Collective on Mat 2505fee21e36SBarry Smith 25068c890885SBarry Smith Level: advanced 25078c890885SBarry Smith 2508133cdb44SSatish Balay Notes: 2509133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2510133cdb44SSatish Balay 2511133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2512133cdb44SSatish Balay 2513133cdb44SSatish Balay .seealso: MatSetOption() 2514133cdb44SSatish Balay @*/ 2515133cdb44SSatish Balay int MatMPIBAIJSetHashTableFactor(Mat mat,double fact) 2516133cdb44SSatish Balay { 251725fdafccSSatish Balay Mat_MPIBAIJ *baij; 2518133cdb44SSatish Balay 2519133cdb44SSatish Balay PetscFunctionBegin; 2520133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 252125fdafccSSatish Balay if (mat->type != MATMPIBAIJ) { 2522133cdb44SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only."); 2523133cdb44SSatish Balay } 2524133cdb44SSatish Balay baij = (Mat_MPIBAIJ*) mat->data; 2525133cdb44SSatish Balay baij->ht_fact = fact; 2526133cdb44SSatish Balay PetscFunctionReturn(0); 2527133cdb44SSatish Balay } 2528