xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 112444f445afd2ff3b13d8a223b16527a1e55859)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
4f3da1532SBarry Smith #include "petscblaslapack.h"
579bdfe76SSatish Balay 
6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
7dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
15f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1693fea6afSBarry Smith 
174a2ae208SSatish Balay #undef __FUNCT__
18985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
19985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
207843d17aSBarry Smith {
217843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
22dfbe8321SBarry Smith   PetscErrorCode ierr;
23985db425SBarry Smith   PetscInt       i,*idxb = 0;
2487828ca2SBarry Smith   PetscScalar    *va,*vb;
257843d17aSBarry Smith   Vec            vtmp;
267843d17aSBarry Smith 
277843d17aSBarry Smith   PetscFunctionBegin;
28985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
291ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
30985db425SBarry Smith   if (idx) {
31192daf7cSBarry Smith     for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;}
32985db425SBarry Smith   }
337843d17aSBarry Smith 
34d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
35d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
36985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
371ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
387843d17aSBarry Smith 
39d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++){
40d0f46423SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);}
417843d17aSBarry Smith   }
427843d17aSBarry Smith 
431ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
441ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
45985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
46ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
477843d17aSBarry Smith   PetscFunctionReturn(0);
487843d17aSBarry Smith }
497843d17aSBarry Smith 
507fc3c18eSBarry Smith EXTERN_C_BEGIN
514a2ae208SSatish Balay #undef __FUNCT__
524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
547fc3c18eSBarry Smith {
557fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
56dfbe8321SBarry Smith   PetscErrorCode ierr;
577fc3c18eSBarry Smith 
587fc3c18eSBarry Smith   PetscFunctionBegin;
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
607fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
617fc3c18eSBarry Smith   PetscFunctionReturn(0);
627fc3c18eSBarry Smith }
637fc3c18eSBarry Smith EXTERN_C_END
647fc3c18eSBarry Smith 
657fc3c18eSBarry Smith EXTERN_C_BEGIN
664a2ae208SSatish Balay #undef __FUNCT__
674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
697fc3c18eSBarry Smith {
707fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
71dfbe8321SBarry Smith   PetscErrorCode ierr;
727fc3c18eSBarry Smith 
737fc3c18eSBarry Smith   PetscFunctionBegin;
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
757fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
767fc3c18eSBarry Smith   PetscFunctionReturn(0);
777fc3c18eSBarry Smith }
787fc3c18eSBarry Smith EXTERN_C_END
797fc3c18eSBarry Smith 
80537820f0SBarry Smith /*
81537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8257b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
83e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
8457b952d6SSatish Balay    length of colmap equals the global matrix length.
8557b952d6SSatish Balay */
864a2ae208SSatish Balay #undef __FUNCT__
874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8957b952d6SSatish Balay {
9057b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9157b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
926849ba73SBarry Smith   PetscErrorCode ierr;
93d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9457b952d6SSatish Balay 
95d64ed03dSBarry Smith   PetscFunctionBegin;
96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
97f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9848e59246SSatish Balay   for (i=0; i<nbs; i++){
990f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
10048e59246SSatish Balay   }
10148e59246SSatish Balay #else
102b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10352e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
105928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10648e59246SSatish Balay #endif
1073a40ed3dSBarry Smith   PetscFunctionReturn(0);
10857b952d6SSatish Balay }
10957b952d6SSatish Balay 
110f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11180c1aa95SSatish Balay { \
11280c1aa95SSatish Balay  \
11380c1aa95SSatish Balay     brow = row/bs;  \
11480c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
115ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11680c1aa95SSatish Balay       bcol = col/bs; \
11780c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
118ab26458aSBarry Smith       low = 0; high = nrow; \
119ab26458aSBarry Smith       while (high-low > 3) { \
120ab26458aSBarry Smith         t = (low+high)/2; \
121ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
122ab26458aSBarry Smith         else              low  = t; \
123ab26458aSBarry Smith       } \
124ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12580c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12680c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12780c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
128eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
129eada6651SSatish Balay           else                    *bap  = value;  \
130ac7a638eSSatish Balay           goto a_noinsert; \
13180c1aa95SSatish Balay         } \
13280c1aa95SSatish Balay       } \
13389280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
134e32f2f54SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
135fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13680c1aa95SSatish Balay       N = nrow++ - 1;  \
13780c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
13880c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
13980c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1403eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14180c1aa95SSatish Balay       } \
1423eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14380c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14480c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
145ac7a638eSSatish Balay       a_noinsert:; \
14680c1aa95SSatish Balay     ailen[brow] = nrow; \
14780c1aa95SSatish Balay }
14857b952d6SSatish Balay 
149ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
150ac7a638eSSatish Balay { \
151ac7a638eSSatish Balay     brow = row/bs;  \
152ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
153ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
154ac7a638eSSatish Balay       bcol = col/bs; \
155ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
156ac7a638eSSatish Balay       low = 0; high = nrow; \
157ac7a638eSSatish Balay       while (high-low > 3) { \
158ac7a638eSSatish Balay         t = (low+high)/2; \
159ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
160ac7a638eSSatish Balay         else              low  = t; \
161ac7a638eSSatish Balay       } \
162ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
163ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
164ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
165ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
166ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
167ac7a638eSSatish Balay           else                    *bap  = value;  \
168ac7a638eSSatish Balay           goto b_noinsert; \
169ac7a638eSSatish Balay         } \
170ac7a638eSSatish Balay       } \
17189280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
172e32f2f54SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
173fef13f97SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
174085a36d4SBarry Smith       CHKMEMQ;\
175ac7a638eSSatish Balay       N = nrow++ - 1;  \
176ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
177ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
178ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1793eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
180ac7a638eSSatish Balay       } \
1813eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
182ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
183ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
184ac7a638eSSatish Balay       b_noinsert:; \
185ac7a638eSSatish Balay     bilen[brow] = nrow; \
186ac7a638eSSatish Balay }
187ac7a638eSSatish Balay 
1884a2ae208SSatish Balay #undef __FUNCT__
1894a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
190b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19157b952d6SSatish Balay {
19257b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19393fea6afSBarry Smith   MatScalar      value;
194273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
195dfbe8321SBarry Smith   PetscErrorCode ierr;
196b24ad042SBarry Smith   PetscInt       i,j,row,col;
197d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
198d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
199d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
20057b952d6SSatish Balay 
201eada6651SSatish Balay   /* Some Variables required in the macro */
20280c1aa95SSatish Balay   Mat            A = baij->A;
20380c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
204b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2053eda8832SBarry Smith   MatScalar      *aa=a->a;
206ac7a638eSSatish Balay 
207ac7a638eSSatish Balay   Mat            B = baij->B;
208ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
209b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2103eda8832SBarry Smith   MatScalar      *ba=b->a;
211ac7a638eSSatish Balay 
212b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
213b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2143eda8832SBarry Smith   MatScalar      *ap,*bap;
21580c1aa95SSatish Balay 
216d64ed03dSBarry Smith   PetscFunctionBegin;
21771fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
21857b952d6SSatish Balay   for (i=0; i<m; i++) {
2195ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
221e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
222639f9d9dSBarry Smith #endif
22357b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22457b952d6SSatish Balay       row = im[i] - rstart_orig;
22557b952d6SSatish Balay       for (j=0; j<n; j++) {
22657b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22757b952d6SSatish Balay           col = in[j] - cstart_orig;
22857b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23080c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23173959e64SBarry Smith         } else if (in[j] < 0) continue;
2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
233cb9801acSJed Brown         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);
234639f9d9dSBarry Smith #endif
23557b952d6SSatish Balay         else {
23657b952d6SSatish Balay           if (mat->was_assembled) {
237905e6a2fSBarry Smith             if (!baij->colmap) {
238905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
239905e6a2fSBarry Smith             }
240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2410f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
242bba1ac68SSatish Balay             col  = col - 1;
24348e59246SSatish Balay #else
244bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24548e59246SSatish Balay #endif
24657b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24757b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2488295de27SSatish Balay               col =  in[j];
2499bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2509bf004c3SSatish Balay               B = baij->B;
2519bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2529bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2539bf004c3SSatish Balay               ba=b->a;
254bba1ac68SSatish Balay             } else col += in[j]%bs;
2558295de27SSatish Balay           } else col = in[j];
25657b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25790da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25890da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25957b952d6SSatish Balay         }
26057b952d6SSatish Balay       }
261d64ed03dSBarry Smith     } else {
26290f02eecSBarry Smith       if (!baij->donotstash) {
263ff2fd236SBarry Smith         if (roworiented) {
264b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
265ff2fd236SBarry Smith         } else {
266b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26757b952d6SSatish Balay         }
26857b952d6SSatish Balay       }
26957b952d6SSatish Balay     }
27090f02eecSBarry Smith   }
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
27257b952d6SSatish Balay }
27357b952d6SSatish Balay 
2744a2ae208SSatish Balay #undef __FUNCT__
27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
277ab26458aSBarry Smith {
278ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
279dd6ea824SBarry Smith   const PetscScalar *value;
280f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
281273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
282dfbe8321SBarry Smith   PetscErrorCode    ierr;
283899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
284899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
285d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
286ab26458aSBarry Smith 
287b16ae2b1SBarry Smith   PetscFunctionBegin;
28830793edcSSatish Balay   if(!barray) {
28982502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29082502324SSatish Balay     baij->barray = barray;
29130793edcSSatish Balay   }
29230793edcSSatish Balay 
293ab26458aSBarry Smith   if (roworiented) {
294ab26458aSBarry Smith     stepval = (n-1)*bs;
295ab26458aSBarry Smith   } else {
296ab26458aSBarry Smith     stepval = (m-1)*bs;
297ab26458aSBarry Smith   }
298ab26458aSBarry Smith   for (i=0; i<m; i++) {
2995ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
301e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
302ab26458aSBarry Smith #endif
303ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
304ab26458aSBarry Smith       row = im[i] - rstart;
305ab26458aSBarry Smith       for (j=0; j<n; j++) {
30615b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30715b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
308f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
30915b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
310f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31115b57d14SSatish Balay         } else { /* Here a copy is required */
312ab26458aSBarry Smith           if (roworiented) {
31353ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
314ab26458aSBarry Smith           } else {
31553ef36baSBarry Smith 	    value = v + (j*(stepval+bs) + i)*bs;
316abef11f7SSatish Balay           }
31753ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
31847513183SBarry Smith             for (jj=0; jj<bs; jj++) {
31953ef36baSBarry Smith               barray[jj]  = value[jj];
32047513183SBarry Smith             }
32153ef36baSBarry Smith             barray += bs;
32247513183SBarry Smith           }
32330793edcSSatish Balay           barray -= bs2;
32415b57d14SSatish Balay         }
325abef11f7SSatish Balay 
326abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
327abef11f7SSatish Balay           col  = in[j] - cstart;
32897e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
329ab26458aSBarry Smith         }
3305ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3312515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
332cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
333ab26458aSBarry Smith #endif
334ab26458aSBarry Smith         else {
335ab26458aSBarry Smith           if (mat->was_assembled) {
336ab26458aSBarry Smith             if (!baij->colmap) {
337ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
338ab26458aSBarry Smith             }
339a5eb4965SSatish Balay 
3402515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
341aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
342b24ad042SBarry Smith             { PetscInt data;
3430f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
344e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
345fa46199cSSatish Balay             }
34648e59246SSatish Balay #else
347e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
348a5eb4965SSatish Balay #endif
34948e59246SSatish Balay #endif
350aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3510f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
352fa46199cSSatish Balay             col  = (col - 1)/bs;
35348e59246SSatish Balay #else
354a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35548e59246SSatish Balay #endif
356ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
357ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
358ab26458aSBarry Smith               col =  in[j];
359ab26458aSBarry Smith             }
360ab26458aSBarry Smith           }
361ab26458aSBarry Smith           else col = in[j];
36297e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
363ab26458aSBarry Smith         }
364ab26458aSBarry Smith       }
365d64ed03dSBarry Smith     } else {
366ab26458aSBarry Smith       if (!baij->donotstash) {
367ff2fd236SBarry Smith         if (roworiented) {
3686fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
369ff2fd236SBarry Smith         } else {
3706fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
371ff2fd236SBarry Smith         }
372abef11f7SSatish Balay       }
373ab26458aSBarry Smith     }
374ab26458aSBarry Smith   }
3753a40ed3dSBarry Smith   PetscFunctionReturn(0);
376ab26458aSBarry Smith }
3776fa18ffdSBarry Smith 
3780bdbc534SSatish Balay #define HASH_KEY 0.6180339887
379b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
380b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
381b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3824a2ae208SSatish Balay #undef __FUNCT__
38397e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38497e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3850bdbc534SSatish Balay {
3860bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
387273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
388dfbe8321SBarry Smith   PetscErrorCode ierr;
389b24ad042SBarry Smith   PetscInt       i,j,row,col;
390d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
391d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,Nbs=baij->Nbs;
392d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
393329f5518SBarry Smith   PetscReal      tmp;
3943eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3952515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
396b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3974a15367fSSatish Balay #endif
3980bdbc534SSatish Balay 
3990bdbc534SSatish Balay   PetscFunctionBegin;
40071fd2e92SBarry Smith   if (v) PetscValidScalarPointer(v,6);
4010bdbc534SSatish Balay   for (i=0; i<m; i++) {
4022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
403e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
404e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4050bdbc534SSatish Balay #endif
4060bdbc534SSatish Balay       row = im[i];
407c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4080bdbc534SSatish Balay       for (j=0; j<n; j++) {
4090bdbc534SSatish Balay         col = in[j];
4106fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
411b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
412c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
413c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4140bdbc534SSatish Balay 
415c2760754SSatish Balay 
416c2760754SSatish Balay         idx = h1;
4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
418187ce0cbSSatish Balay         insert_ct++;
419187ce0cbSSatish Balay         total_ct++;
420187ce0cbSSatish Balay         if (HT[idx] != key) {
421187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
422187ce0cbSSatish Balay           if (idx == size) {
423187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
424187ce0cbSSatish Balay             if (idx == h1) {
425e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
426187ce0cbSSatish Balay             }
427187ce0cbSSatish Balay           }
428187ce0cbSSatish Balay         }
429187ce0cbSSatish Balay #else
430c2760754SSatish Balay         if (HT[idx] != key) {
431c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
432c2760754SSatish Balay           if (idx == size) {
433c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
434c2760754SSatish Balay             if (idx == h1) {
435e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
436c2760754SSatish Balay             }
437c2760754SSatish Balay           }
438c2760754SSatish Balay         }
439187ce0cbSSatish Balay #endif
440c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
441c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
442c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4430bdbc534SSatish Balay       }
4440bdbc534SSatish Balay     } else {
4450bdbc534SSatish Balay       if (!baij->donotstash) {
446ff2fd236SBarry Smith         if (roworiented) {
447b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
448ff2fd236SBarry Smith         } else {
449b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4500bdbc534SSatish Balay         }
4510bdbc534SSatish Balay       }
4520bdbc534SSatish Balay     }
4530bdbc534SSatish Balay   }
4542515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
455187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
456187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
457187ce0cbSSatish Balay #endif
4580bdbc534SSatish Balay   PetscFunctionReturn(0);
4590bdbc534SSatish Balay }
4600bdbc534SSatish Balay 
4614a2ae208SSatish Balay #undef __FUNCT__
46297e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46397e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4640bdbc534SSatish Balay {
4650bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
466273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
467dfbe8321SBarry Smith   PetscErrorCode    ierr;
468b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
469899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
470d0f46423SBarry Smith   PetscInt          rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
471b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
472329f5518SBarry Smith   PetscReal         tmp;
4733eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
474dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4752515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
476b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4774a15367fSSatish Balay #endif
4780bdbc534SSatish Balay 
479d0a41580SSatish Balay   PetscFunctionBegin;
480d0a41580SSatish Balay 
4810bdbc534SSatish Balay   if (roworiented) {
4820bdbc534SSatish Balay     stepval = (n-1)*bs;
4830bdbc534SSatish Balay   } else {
4840bdbc534SSatish Balay     stepval = (m-1)*bs;
4850bdbc534SSatish Balay   }
4860bdbc534SSatish Balay   for (i=0; i<m; i++) {
4872515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
488e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
489e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4900bdbc534SSatish Balay #endif
4910bdbc534SSatish Balay     row   = im[i];
492ab715e2cSSatish Balay     v_t   = v + i*nbs2;
493c2760754SSatish Balay     if (row >= rstart && row < rend) {
4940bdbc534SSatish Balay       for (j=0; j<n; j++) {
4950bdbc534SSatish Balay         col = in[j];
4960bdbc534SSatish Balay 
4970bdbc534SSatish Balay         /* Look up into the Hash Table */
498c2760754SSatish Balay         key = row*Nbs+col+1;
499c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5000bdbc534SSatish Balay 
501c2760754SSatish Balay         idx = h1;
5022515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
503187ce0cbSSatish Balay         total_ct++;
504187ce0cbSSatish Balay         insert_ct++;
505187ce0cbSSatish Balay        if (HT[idx] != key) {
506187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
507187ce0cbSSatish Balay           if (idx == size) {
508187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
509187ce0cbSSatish Balay             if (idx == h1) {
510e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
511187ce0cbSSatish Balay             }
512187ce0cbSSatish Balay           }
513187ce0cbSSatish Balay         }
514187ce0cbSSatish Balay #else
515c2760754SSatish Balay         if (HT[idx] != key) {
516c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
517c2760754SSatish Balay           if (idx == size) {
518c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
519c2760754SSatish Balay             if (idx == h1) {
520e32f2f54SBarry Smith               SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
521c2760754SSatish Balay             }
522c2760754SSatish Balay           }
523c2760754SSatish Balay         }
524187ce0cbSSatish Balay #endif
525c2760754SSatish Balay         baij_a = HD[idx];
5260bdbc534SSatish Balay         if (roworiented) {
527c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
528187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
529187ce0cbSSatish Balay           value = v_t;
530187ce0cbSSatish Balay           v_t  += bs;
531fef45726SSatish Balay           if (addv == ADD_VALUES) {
532c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
533c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
534fef45726SSatish Balay                 baij_a[jj]  += *value++;
535b4cc0f5aSSatish Balay               }
536b4cc0f5aSSatish Balay             }
537fef45726SSatish Balay           } else {
538c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
539c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
540fef45726SSatish Balay                 baij_a[jj]  = *value++;
541fef45726SSatish Balay               }
542fef45726SSatish Balay             }
543fef45726SSatish Balay           }
5440bdbc534SSatish Balay         } else {
5450bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
546fef45726SSatish Balay           if (addv == ADD_VALUES) {
547b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5480bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
549fef45726SSatish Balay                 baij_a[jj]  += *value++;
550fef45726SSatish Balay               }
551fef45726SSatish Balay             }
552fef45726SSatish Balay           } else {
553fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
554fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
555fef45726SSatish Balay                 baij_a[jj]  = *value++;
556fef45726SSatish Balay               }
557b4cc0f5aSSatish Balay             }
5580bdbc534SSatish Balay           }
5590bdbc534SSatish Balay         }
5600bdbc534SSatish Balay       }
5610bdbc534SSatish Balay     } else {
5620bdbc534SSatish Balay       if (!baij->donotstash) {
5630bdbc534SSatish Balay         if (roworiented) {
5648798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5650bdbc534SSatish Balay         } else {
5668798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5670bdbc534SSatish Balay         }
5680bdbc534SSatish Balay       }
5690bdbc534SSatish Balay     }
5700bdbc534SSatish Balay   }
5712515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
572187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
573187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
574187ce0cbSSatish Balay #endif
5750bdbc534SSatish Balay   PetscFunctionReturn(0);
5760bdbc534SSatish Balay }
577133cdb44SSatish Balay 
5784a2ae208SSatish Balay #undef __FUNCT__
5794a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
580b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
581d6de1c52SSatish Balay {
582d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5836849ba73SBarry Smith   PetscErrorCode ierr;
584d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
585d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
586d6de1c52SSatish Balay 
587133cdb44SSatish Balay   PetscFunctionBegin;
588d6de1c52SSatish Balay   for (i=0; i<m; i++) {
589e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
590e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
591d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
592d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
593d6de1c52SSatish Balay       for (j=0; j<n; j++) {
594e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
595e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
596d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
597d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59898dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
599d64ed03dSBarry Smith         } else {
600905e6a2fSBarry Smith           if (!baij->colmap) {
601905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
602905e6a2fSBarry Smith           }
603aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6040f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
605fa46199cSSatish Balay           data --;
60648e59246SSatish Balay #else
60748e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60848e59246SSatish Balay #endif
60948e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
610d9d09a02SSatish Balay           else {
61148e59246SSatish Balay             col  = data + idxn[j]%bs;
61298dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
613d6de1c52SSatish Balay           }
614d6de1c52SSatish Balay         }
615d6de1c52SSatish Balay       }
616d64ed03dSBarry Smith     } else {
617e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
618d6de1c52SSatish Balay     }
619d6de1c52SSatish Balay   }
6203a40ed3dSBarry Smith  PetscFunctionReturn(0);
621d6de1c52SSatish Balay }
622d6de1c52SSatish Balay 
6234a2ae208SSatish Balay #undef __FUNCT__
6244a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
625dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
626d6de1c52SSatish Balay {
627d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
628d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
629dfbe8321SBarry Smith   PetscErrorCode ierr;
630d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
631329f5518SBarry Smith   PetscReal      sum = 0.0;
6323eda8832SBarry Smith   MatScalar      *v;
633d6de1c52SSatish Balay 
634d64ed03dSBarry Smith   PetscFunctionBegin;
635d6de1c52SSatish Balay   if (baij->size == 1) {
636064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
637d6de1c52SSatish Balay   } else {
638d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
639d6de1c52SSatish Balay       v = amat->a;
6408a62d963SHong Zhang       nz = amat->nz*bs2;
6418a62d963SHong Zhang       for (i=0; i<nz; i++) {
642aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
643329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
644d6de1c52SSatish Balay #else
645d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
646d6de1c52SSatish Balay #endif
647d6de1c52SSatish Balay       }
648d6de1c52SSatish Balay       v = bmat->a;
6498a62d963SHong Zhang       nz = bmat->nz*bs2;
6508a62d963SHong Zhang       for (i=0; i<nz; i++) {
651aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
652329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
653d6de1c52SSatish Balay #else
654d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
655d6de1c52SSatish Balay #endif
656d6de1c52SSatish Balay       }
6577adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
658064f8208SBarry Smith       *nrm = sqrt(*nrm);
6598a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6608a62d963SHong Zhang       PetscReal *tmp,*tmp2;
661899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
662fca92195SBarry Smith       ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr);
663d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6648a62d963SHong Zhang       v = amat->a; jj = amat->j;
6658a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6668a62d963SHong Zhang         for (j=0; j<bs; j++){
6678a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6688a62d963SHong Zhang           for (row=0; row<bs; row++){
6698a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6708a62d963SHong Zhang           }
6718a62d963SHong Zhang         }
6728a62d963SHong Zhang         jj++;
6738a62d963SHong Zhang       }
6748a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6758a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6768a62d963SHong Zhang         for (j=0; j<bs; j++){
6778a62d963SHong Zhang           col = bs*garray[*jj] + j;
6788a62d963SHong Zhang           for (row=0; row<bs; row++){
6798a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6808a62d963SHong Zhang           }
6818a62d963SHong Zhang         }
6828a62d963SHong Zhang         jj++;
6838a62d963SHong Zhang       }
684d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6858a62d963SHong Zhang       *nrm = 0.0;
686d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6878a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6888a62d963SHong Zhang       }
689fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
6908a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
691577dd1f9SKris Buschelman       PetscReal *sums;
692cb9801acSJed Brown       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr);
6938a62d963SHong Zhang       sum = 0.0;
6948a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6958a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6968a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6978a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6988a62d963SHong Zhang         for (i=0; i<nz; i++) {
6998a62d963SHong Zhang           for (col=0; col<bs; col++){
7008a62d963SHong Zhang             for (row=0; row<bs; row++){
7018a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7028a62d963SHong Zhang             }
7038a62d963SHong Zhang           }
7048a62d963SHong Zhang         }
7058a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7068a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7078a62d963SHong Zhang         for (i=0; i<nz; i++) {
7088a62d963SHong Zhang           for (col=0; col<bs; col++){
7098a62d963SHong Zhang             for (row=0; row<bs; row++){
7108a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7118a62d963SHong Zhang             }
7128a62d963SHong Zhang           }
7138a62d963SHong Zhang         }
7148a62d963SHong Zhang         for (row=0; row<bs; row++){
7158a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7168a62d963SHong Zhang         }
7178a62d963SHong Zhang       }
7187adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
719577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
720e7e72b3dSBarry Smith     } else SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_SUP,"No support for this norm yet");
721d64ed03dSBarry Smith   }
7223a40ed3dSBarry Smith   PetscFunctionReturn(0);
723d6de1c52SSatish Balay }
72457b952d6SSatish Balay 
725fef45726SSatish Balay /*
726fef45726SSatish Balay   Creates the hash table, and sets the table
727fef45726SSatish Balay   This table is created only once.
728fef45726SSatish Balay   If new entried need to be added to the matrix
729fef45726SSatish Balay   then the hash table has to be destroyed and
730fef45726SSatish Balay   recreated.
731fef45726SSatish Balay */
7324a2ae208SSatish Balay #undef __FUNCT__
7334a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
734dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
735596b8d2eSBarry Smith {
736596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
737596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
738596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
739b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7406849ba73SBarry Smith   PetscErrorCode ierr;
741fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
742899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
743b24ad042SBarry Smith   PetscInt       *HT,key;
7443eda8832SBarry Smith   MatScalar      **HD;
745329f5518SBarry Smith   PetscReal      tmp;
7466cf91177SBarry Smith #if defined(PETSC_USE_INFO)
747b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7484a15367fSSatish Balay #endif
749fef45726SSatish Balay 
750d64ed03dSBarry Smith   PetscFunctionBegin;
751fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
752fef45726SSatish Balay 
753fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
754fca92195SBarry Smith   ht_size       = baij->ht_size;
7550bdbc534SSatish Balay 
756fef45726SSatish Balay   /* Allocate Memory for Hash Table */
757fca92195SBarry Smith   ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr);
758fca92195SBarry Smith   ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr);
759fca92195SBarry Smith   ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr);
760b9e4cc15SSatish Balay   HD   = baij->hd;
761a07cd24cSSatish Balay   HT   = baij->ht;
762b9e4cc15SSatish Balay 
763596b8d2eSBarry Smith   /* Loop Over A */
7640bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
765596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7660bdbc534SSatish Balay       row = i+rstart;
7670bdbc534SSatish Balay       col = aj[j]+cstart;
768596b8d2eSBarry Smith 
769187ce0cbSSatish Balay       key = row*Nbs + col + 1;
770fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
771fca92195SBarry Smith       for (k=0; k<ht_size; k++){
772fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
773fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
774fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
775596b8d2eSBarry Smith           break;
7766cf91177SBarry Smith #if defined(PETSC_USE_INFO)
777187ce0cbSSatish Balay         } else {
778187ce0cbSSatish Balay           ct++;
779187ce0cbSSatish Balay #endif
780596b8d2eSBarry Smith         }
781187ce0cbSSatish Balay       }
7826cf91177SBarry Smith #if defined(PETSC_USE_INFO)
783187ce0cbSSatish Balay       if (k> max) max = k;
784187ce0cbSSatish Balay #endif
785596b8d2eSBarry Smith     }
786596b8d2eSBarry Smith   }
787596b8d2eSBarry Smith   /* Loop Over B */
7880bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
789596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7900bdbc534SSatish Balay       row = i+rstart;
7910bdbc534SSatish Balay       col = garray[bj[j]];
792187ce0cbSSatish Balay       key = row*Nbs + col + 1;
793fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
794fca92195SBarry Smith       for (k=0; k<ht_size; k++){
795fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
796fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
797fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
798596b8d2eSBarry Smith           break;
7996cf91177SBarry Smith #if defined(PETSC_USE_INFO)
800187ce0cbSSatish Balay         } else {
801187ce0cbSSatish Balay           ct++;
802187ce0cbSSatish Balay #endif
803596b8d2eSBarry Smith         }
804187ce0cbSSatish Balay       }
8056cf91177SBarry Smith #if defined(PETSC_USE_INFO)
806187ce0cbSSatish Balay       if (k> max) max = k;
807187ce0cbSSatish Balay #endif
808596b8d2eSBarry Smith     }
809596b8d2eSBarry Smith   }
810596b8d2eSBarry Smith 
811596b8d2eSBarry Smith   /* Print Summary */
8126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
813fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
814596b8d2eSBarry Smith     if (HT[i]) {j++;}
815c38d4ed2SBarry Smith   }
8161e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
817187ce0cbSSatish Balay #endif
8183a40ed3dSBarry Smith   PetscFunctionReturn(0);
819596b8d2eSBarry Smith }
82057b952d6SSatish Balay 
8214a2ae208SSatish Balay #undef __FUNCT__
8224a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
823dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
824bbb85fb3SSatish Balay {
825bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
826dfbe8321SBarry Smith   PetscErrorCode ierr;
827b24ad042SBarry Smith   PetscInt       nstash,reallocs;
828bbb85fb3SSatish Balay   InsertMode     addv;
829bbb85fb3SSatish Balay 
830bbb85fb3SSatish Balay   PetscFunctionBegin;
831bbb85fb3SSatish Balay   if (baij->donotstash) {
832bbb85fb3SSatish Balay     PetscFunctionReturn(0);
833bbb85fb3SSatish Balay   }
834bbb85fb3SSatish Balay 
835bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8367adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
837e7e72b3dSBarry Smith   if (addv == (ADD_VALUES|INSERT_VALUES)) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
838bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
839bbb85fb3SSatish Balay 
840d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8411e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8428798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8431e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
84446680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8451e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
846bbb85fb3SSatish Balay   PetscFunctionReturn(0);
847bbb85fb3SSatish Balay }
848bbb85fb3SSatish Balay 
8494a2ae208SSatish Balay #undef __FUNCT__
8504a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
851dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
852bbb85fb3SSatish Balay {
853bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
85491c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8556849ba73SBarry Smith   PetscErrorCode ierr;
856b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
857e44c0bd4SBarry Smith   PetscInt       *row,*col;
858e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8593eda8832SBarry Smith   MatScalar      *val;
860bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
861b24ad042SBarry Smith   PetscMPIInt    n;
862bbb85fb3SSatish Balay 
86391c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
864bbb85fb3SSatish Balay   PetscFunctionBegin;
865bbb85fb3SSatish Balay   if (!baij->donotstash) {
866a2d1c673SSatish Balay     while (1) {
8678798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
868a2d1c673SSatish Balay       if (!flg) break;
869a2d1c673SSatish Balay 
870bbb85fb3SSatish Balay       for (i=0; i<n;) {
871bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
872bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
873bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
874bbb85fb3SSatish Balay         else       ncols = n-i;
875bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
87697e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
877bbb85fb3SSatish Balay         i = j;
878bbb85fb3SSatish Balay       }
879bbb85fb3SSatish Balay     }
8808798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
881a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
882a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
883a2d1c673SSatish Balay        restore the original flags */
884a2d1c673SSatish Balay     r1 = baij->roworiented;
885a2d1c673SSatish Balay     r2 = a->roworiented;
88691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8877c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8887c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
88991c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
890a2d1c673SSatish Balay     while (1) {
8918798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
892a2d1c673SSatish Balay       if (!flg) break;
893a2d1c673SSatish Balay 
894a2d1c673SSatish Balay       for (i=0; i<n;) {
895a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
896a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
897a2d1c673SSatish Balay         if (j < n) ncols = j-i;
898a2d1c673SSatish Balay         else       ncols = n-i;
89997e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
900a2d1c673SSatish Balay         i = j;
901a2d1c673SSatish Balay       }
902a2d1c673SSatish Balay     }
9038798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
904a2d1c673SSatish Balay     baij->roworiented = r1;
905a2d1c673SSatish Balay     a->roworiented    = r2;
90691c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
907bbb85fb3SSatish Balay   }
908bbb85fb3SSatish Balay 
909bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
910bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
911bbb85fb3SSatish Balay 
912bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
913bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
914bbb85fb3SSatish Balay   /*
915bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
916bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
917bbb85fb3SSatish Balay   */
918bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9197adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
920bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
921bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
922bbb85fb3SSatish Balay     }
923bbb85fb3SSatish Balay   }
924bbb85fb3SSatish Balay 
925bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
926bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
927bbb85fb3SSatish Balay   }
92891c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
929bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
930bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
931bbb85fb3SSatish Balay 
9326cf91177SBarry Smith #if defined(PETSC_USE_INFO)
933bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9341e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
935bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
936bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
937bbb85fb3SSatish Balay   }
938bbb85fb3SSatish Balay #endif
939bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
940bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
941bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
942bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
943bbb85fb3SSatish Balay   }
944bbb85fb3SSatish Balay 
945fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
946606d414cSSatish Balay   baij->rowvalues = 0;
947bbb85fb3SSatish Balay   PetscFunctionReturn(0);
948bbb85fb3SSatish Balay }
94957b952d6SSatish Balay 
9504a2ae208SSatish Balay #undef __FUNCT__
9514a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9526849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
95357b952d6SSatish Balay {
95457b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
955dfbe8321SBarry Smith   PetscErrorCode    ierr;
956b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
957d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
95832077d6dSBarry Smith   PetscTruth        iascii,isdraw;
959b0a32e0cSBarry Smith   PetscViewer       sviewer;
960f3ef73ceSBarry Smith   PetscViewerFormat format;
96157b952d6SSatish Balay 
962d64ed03dSBarry Smith   PetscFunctionBegin;
9632692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
9642692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
96532077d6dSBarry Smith   if (iascii) {
966b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
967456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9684e220ebcSLois Curfman McInnes       MatInfo info;
9697adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
970d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
97177431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
972d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
973d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
974d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
97577431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
976d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
97777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
978b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
97907d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
98057b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9813a40ed3dSBarry Smith       PetscFunctionReturn(0);
982fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
98377431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9843a40ed3dSBarry Smith       PetscFunctionReturn(0);
98504929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
98604929863SHong Zhang       PetscFunctionReturn(0);
98757b952d6SSatish Balay     }
98857b952d6SSatish Balay   }
98957b952d6SSatish Balay 
9900f5bd95cSBarry Smith   if (isdraw) {
991b0a32e0cSBarry Smith     PetscDraw       draw;
99257b952d6SSatish Balay     PetscTruth isnull;
993b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
994b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
99557b952d6SSatish Balay   }
99657b952d6SSatish Balay 
99757b952d6SSatish Balay   if (size == 1) {
9987adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
99957b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1000d64ed03dSBarry Smith   } else {
100157b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
100257b952d6SSatish Balay     Mat         A;
100357b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1004d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10053eda8832SBarry Smith     MatScalar   *a;
100657b952d6SSatish Balay 
1007f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1008f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10097adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
101057b952d6SSatish Balay     if (!rank) {
1011f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1012d64ed03dSBarry Smith     } else {
1013f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
101457b952d6SSatish Balay     }
1015f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1016d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
101752e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
101857b952d6SSatish Balay 
101957b952d6SSatish Balay     /* copy over the A part */
102057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
102157b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1022b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
102357b952d6SSatish Balay 
102457b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1025899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
102657b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
102757b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1028899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
102957b952d6SSatish Balay         for (k=0; k<bs; k++) {
103097e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1031cee3aa6bSSatish Balay           col++; a += bs;
103257b952d6SSatish Balay         }
103357b952d6SSatish Balay       }
103457b952d6SSatish Balay     }
103557b952d6SSatish Balay     /* copy over the B part */
103657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
103757b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
103857b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1039899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104057b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
104157b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
104257b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
104357b952d6SSatish Balay         for (k=0; k<bs; k++) {
104497e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1045cee3aa6bSSatish Balay           col++; a += bs;
104657b952d6SSatish Balay         }
104757b952d6SSatish Balay       }
104857b952d6SSatish Balay     }
1049606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10506d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10516d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
105255843e3eSBarry Smith     /*
105355843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1054b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
105555843e3eSBarry Smith     */
1056b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1057f14a1c24SBarry Smith     if (!rank) {
10587adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10596831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
106057b952d6SSatish Balay     }
1061b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
106257b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
106357b952d6SSatish Balay   }
10643a40ed3dSBarry Smith   PetscFunctionReturn(0);
106557b952d6SSatish Balay }
106657b952d6SSatish Balay 
10674a2ae208SSatish Balay #undef __FUNCT__
10684a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1069dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
107057b952d6SSatish Balay {
1071dfbe8321SBarry Smith   PetscErrorCode ierr;
107232077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
107357b952d6SSatish Balay 
1074d64ed03dSBarry Smith   PetscFunctionBegin;
10752692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
10762692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
10772692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
10782692d6eeSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
107932077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10807b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10815cd90555SBarry Smith   } else {
108265e19b50SBarry Smith     SETERRQ1(((PetscObject)mat)->comm,PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
108357b952d6SSatish Balay   }
10843a40ed3dSBarry Smith   PetscFunctionReturn(0);
108557b952d6SSatish Balay }
108657b952d6SSatish Balay 
10874a2ae208SSatish Balay #undef __FUNCT__
10884a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1089dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
109079bdfe76SSatish Balay {
109179bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1092dfbe8321SBarry Smith   PetscErrorCode ierr;
109379bdfe76SSatish Balay 
1094d64ed03dSBarry Smith   PetscFunctionBegin;
1095aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1096d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
109779bdfe76SSatish Balay #endif
10988798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
10998798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
110079bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
110179bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1102aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11039c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
110448e59246SSatish Balay #else
110505b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
110648e59246SSatish Balay #endif
110705b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1108606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1109606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1110fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
111105b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1112fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1113899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1114606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1115901853e0SKris Buschelman 
1116dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1117901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1118901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1119901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1120901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1121aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1122901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1123901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11243a40ed3dSBarry Smith   PetscFunctionReturn(0);
112579bdfe76SSatish Balay }
112679bdfe76SSatish Balay 
11274a2ae208SSatish Balay #undef __FUNCT__
11284a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1129dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1130cee3aa6bSSatish Balay {
1131cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1132dfbe8321SBarry Smith   PetscErrorCode ierr;
1133b24ad042SBarry Smith   PetscInt       nt;
1134cee3aa6bSSatish Balay 
1135d64ed03dSBarry Smith   PetscFunctionBegin;
1136e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1137e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1138e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1139e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1140ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1141f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1142ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1143f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1145cee3aa6bSSatish Balay }
1146cee3aa6bSSatish Balay 
11474a2ae208SSatish Balay #undef __FUNCT__
11484a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1149dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1150cee3aa6bSSatish Balay {
1151cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1152dfbe8321SBarry Smith   PetscErrorCode ierr;
1153d64ed03dSBarry Smith 
1154d64ed03dSBarry Smith   PetscFunctionBegin;
1155ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1156f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1157ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1158f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1160cee3aa6bSSatish Balay }
1161cee3aa6bSSatish Balay 
11624a2ae208SSatish Balay #undef __FUNCT__
11634a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1164dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1165cee3aa6bSSatish Balay {
1166cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1167dfbe8321SBarry Smith   PetscErrorCode ierr;
1168a5ff213dSBarry Smith   PetscTruth     merged;
1169cee3aa6bSSatish Balay 
1170d64ed03dSBarry Smith   PetscFunctionBegin;
1171a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1172cee3aa6bSSatish Balay   /* do nondiagonal part */
11737c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1174a5ff213dSBarry Smith   if (!merged) {
1175cee3aa6bSSatish Balay     /* send it on its way */
1176ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1177cee3aa6bSSatish Balay     /* do local part */
11787c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1179cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1180a5ff213dSBarry Smith     /* inserted in yy until the next line */
1181ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1182a5ff213dSBarry Smith   } else {
1183a5ff213dSBarry Smith     /* do local part */
1184a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1185a5ff213dSBarry Smith     /* send it on its way */
1186ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1187a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1188ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1189a5ff213dSBarry Smith   }
11903a40ed3dSBarry Smith   PetscFunctionReturn(0);
1191cee3aa6bSSatish Balay }
1192cee3aa6bSSatish Balay 
11934a2ae208SSatish Balay #undef __FUNCT__
11944a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1195dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1196cee3aa6bSSatish Balay {
1197cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1198dfbe8321SBarry Smith   PetscErrorCode ierr;
1199cee3aa6bSSatish Balay 
1200d64ed03dSBarry Smith   PetscFunctionBegin;
1201cee3aa6bSSatish Balay   /* do nondiagonal part */
12027c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1203cee3aa6bSSatish Balay   /* send it on its way */
1204ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1205cee3aa6bSSatish Balay   /* do local part */
12067c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1207cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1208cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1209cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1210ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12113a40ed3dSBarry Smith   PetscFunctionReturn(0);
1212cee3aa6bSSatish Balay }
1213cee3aa6bSSatish Balay 
1214cee3aa6bSSatish Balay /*
1215cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1216cee3aa6bSSatish Balay    diagonal block
1217cee3aa6bSSatish Balay */
12184a2ae208SSatish Balay #undef __FUNCT__
12194a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1220dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1221cee3aa6bSSatish Balay {
1222cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1223dfbe8321SBarry Smith   PetscErrorCode ierr;
1224d64ed03dSBarry Smith 
1225d64ed03dSBarry Smith   PetscFunctionBegin;
1226e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12273a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12283a40ed3dSBarry Smith   PetscFunctionReturn(0);
1229cee3aa6bSSatish Balay }
1230cee3aa6bSSatish Balay 
12314a2ae208SSatish Balay #undef __FUNCT__
12324a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1233f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1234cee3aa6bSSatish Balay {
1235cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1236dfbe8321SBarry Smith   PetscErrorCode ierr;
1237d64ed03dSBarry Smith 
1238d64ed03dSBarry Smith   PetscFunctionBegin;
1239f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1240f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12413a40ed3dSBarry Smith   PetscFunctionReturn(0);
1242cee3aa6bSSatish Balay }
1243026e39d0SSatish Balay 
12444a2ae208SSatish Balay #undef __FUNCT__
12454a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1246b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1247acdf5bf4SSatish Balay {
1248acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
124987828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12506849ba73SBarry Smith   PetscErrorCode ierr;
1251d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1252d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1253899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1254acdf5bf4SSatish Balay 
1255d64ed03dSBarry Smith   PetscFunctionBegin;
1256e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1257e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1258acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1259acdf5bf4SSatish Balay 
1260acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1261acdf5bf4SSatish Balay     /*
1262acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1263acdf5bf4SSatish Balay     */
1264acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1265b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1266bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1267acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1268acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1269acdf5bf4SSatish Balay     }
1270fca92195SBarry Smith     ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr);
1271acdf5bf4SSatish Balay   }
1272d9d09a02SSatish Balay   lrow = row - brstart;
1273acdf5bf4SSatish Balay 
1274acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1275acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1276acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1277f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1278f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1279acdf5bf4SSatish Balay   nztot = nzA + nzB;
1280acdf5bf4SSatish Balay 
1281acdf5bf4SSatish Balay   cmap  = mat->garray;
1282acdf5bf4SSatish Balay   if (v  || idx) {
1283acdf5bf4SSatish Balay     if (nztot) {
1284acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1285b24ad042SBarry Smith       PetscInt imark = -1;
1286acdf5bf4SSatish Balay       if (v) {
1287acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1288acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1289d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1290acdf5bf4SSatish Balay           else break;
1291acdf5bf4SSatish Balay         }
1292acdf5bf4SSatish Balay         imark = i;
1293acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1294acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1295acdf5bf4SSatish Balay       }
1296acdf5bf4SSatish Balay       if (idx) {
1297acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1298acdf5bf4SSatish Balay         if (imark > -1) {
1299acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1300bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1301acdf5bf4SSatish Balay           }
1302acdf5bf4SSatish Balay         } else {
1303acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1304d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1305d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1306acdf5bf4SSatish Balay             else break;
1307acdf5bf4SSatish Balay           }
1308acdf5bf4SSatish Balay           imark = i;
1309acdf5bf4SSatish Balay         }
1310d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1311d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1312acdf5bf4SSatish Balay       }
1313d64ed03dSBarry Smith     } else {
1314d212a18eSSatish Balay       if (idx) *idx = 0;
1315d212a18eSSatish Balay       if (v)   *v   = 0;
1316d212a18eSSatish Balay     }
1317acdf5bf4SSatish Balay   }
1318acdf5bf4SSatish Balay   *nz = nztot;
1319f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1320f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1322acdf5bf4SSatish Balay }
1323acdf5bf4SSatish Balay 
13244a2ae208SSatish Balay #undef __FUNCT__
13254a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1326b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1327acdf5bf4SSatish Balay {
1328acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1329d64ed03dSBarry Smith 
1330d64ed03dSBarry Smith   PetscFunctionBegin;
1331e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1332acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13333a40ed3dSBarry Smith   PetscFunctionReturn(0);
1334acdf5bf4SSatish Balay }
1335acdf5bf4SSatish Balay 
13364a2ae208SSatish Balay #undef __FUNCT__
13374a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1338dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
133958667388SSatish Balay {
134058667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1341dfbe8321SBarry Smith   PetscErrorCode ierr;
1342d64ed03dSBarry Smith 
1343d64ed03dSBarry Smith   PetscFunctionBegin;
134458667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
134558667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13463a40ed3dSBarry Smith   PetscFunctionReturn(0);
134758667388SSatish Balay }
13480ac07820SSatish Balay 
13494a2ae208SSatish Balay #undef __FUNCT__
13504a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1351dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13520ac07820SSatish Balay {
13534e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13544e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1355dfbe8321SBarry Smith   PetscErrorCode ierr;
1356329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13570ac07820SSatish Balay 
1358d64ed03dSBarry Smith   PetscFunctionBegin;
1359d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
13604e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13610e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1362de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13634e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13640e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1365de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13660ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13674e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13684e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13694e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13704e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13714e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13720ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13737adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13744e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13754e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13764e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13774e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13784e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13790ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13807adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13814e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13824e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13834e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13844e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13854e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1386d41123aaSBarry Smith   } else {
138765e19b50SBarry Smith     SETERRQ1(((PetscObject)matin)->comm,PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
13880ac07820SSatish Balay   }
13894e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
13904e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
13914e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
13923a40ed3dSBarry Smith   PetscFunctionReturn(0);
13930ac07820SSatish Balay }
13940ac07820SSatish Balay 
13954a2ae208SSatish Balay #undef __FUNCT__
13964a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
13974e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
139858667388SSatish Balay {
139958667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1400dfbe8321SBarry Smith   PetscErrorCode ierr;
140158667388SSatish Balay 
1402d64ed03dSBarry Smith   PetscFunctionBegin;
140312c028f9SKris Buschelman   switch (op) {
1404512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
140512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
140628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1407a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
140812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14094e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14104e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
141112c028f9SKris Buschelman     break;
141212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14134e0d8c25SBarry Smith     a->roworiented = flg;
14144e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14154e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
141612c028f9SKris Buschelman     break;
14174e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1418290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
141912c028f9SKris Buschelman     break;
142012c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14214e0d8c25SBarry Smith     a->donotstash = flg;
142212c028f9SKris Buschelman     break;
142312c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14244e0d8c25SBarry Smith     a->ht_flag = flg;
142512c028f9SKris Buschelman     break;
142677e54ba9SKris Buschelman   case MAT_SYMMETRIC:
142777e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14282188ac68SBarry Smith   case MAT_HERMITIAN:
14292188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14304e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
143177e54ba9SKris Buschelman     break;
143212c028f9SKris Buschelman   default:
143365e19b50SBarry Smith     SETERRQ1(((PetscObject)A)->comm,PETSC_ERR_SUP,"unknown option %d",op);
1434d64ed03dSBarry Smith   }
14353a40ed3dSBarry Smith   PetscFunctionReturn(0);
143658667388SSatish Balay }
143758667388SSatish Balay 
14384a2ae208SSatish Balay #undef __FUNCT__
14394a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1440fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14410ac07820SSatish Balay {
14420ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14430ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14440ac07820SSatish Balay   Mat            B;
1445dfbe8321SBarry Smith   PetscErrorCode ierr;
1446d0f46423SBarry Smith   PetscInt       M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1447d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
14483eda8832SBarry Smith   MatScalar      *a;
14490ac07820SSatish Balay 
1450d64ed03dSBarry Smith   PetscFunctionBegin;
1451e7e72b3dSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(((PetscObject)A)->comm,PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1452fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
14537adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1454d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
14557adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1456d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1457fc4dec0aSBarry Smith   } else {
1458fc4dec0aSBarry Smith     B = *matout;
1459fc4dec0aSBarry Smith   }
14600ac07820SSatish Balay 
14610ac07820SSatish Balay   /* copy over the A part */
14620ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14630ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1464b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14650ac07820SSatish Balay 
14660ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1467899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14680ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14690ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1470899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14710ac07820SSatish Balay       for (k=0; k<bs; k++) {
147297e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14730ac07820SSatish Balay         col++; a += bs;
14740ac07820SSatish Balay       }
14750ac07820SSatish Balay     }
14760ac07820SSatish Balay   }
14770ac07820SSatish Balay   /* copy over the B part */
14780ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
14790ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14800ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1481899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14820ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14830ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
14840ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
14850ac07820SSatish Balay       for (k=0; k<bs; k++) {
148697e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14870ac07820SSatish Balay         col++; a += bs;
14880ac07820SSatish Balay       }
14890ac07820SSatish Balay     }
14900ac07820SSatish Balay   }
1491606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
14920ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14930ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
14940ac07820SSatish Balay 
1495815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
14960ac07820SSatish Balay     *matout = B;
14970ac07820SSatish Balay   } else {
1498273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
14990ac07820SSatish Balay   }
15003a40ed3dSBarry Smith   PetscFunctionReturn(0);
15010ac07820SSatish Balay }
15020e95ebc0SSatish Balay 
15034a2ae208SSatish Balay #undef __FUNCT__
15044a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1505dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15060e95ebc0SSatish Balay {
150736c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
150836c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1509dfbe8321SBarry Smith   PetscErrorCode ierr;
1510b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15110e95ebc0SSatish Balay 
1512d64ed03dSBarry Smith   PetscFunctionBegin;
151336c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
151436c4a09eSSatish Balay   if (rr) {
151536c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1516e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
151736c4a09eSSatish Balay     /* Overlap communication with computation. */
1518ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
151936c4a09eSSatish Balay   }
15200e95ebc0SSatish Balay   if (ll) {
15210e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1522e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1523a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15240e95ebc0SSatish Balay   }
152536c4a09eSSatish Balay   /* scale  the diagonal block */
152636c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
152736c4a09eSSatish Balay 
152836c4a09eSSatish Balay   if (rr) {
152936c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1530ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1531a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
153236c4a09eSSatish Balay   }
153336c4a09eSSatish Balay 
15343a40ed3dSBarry Smith   PetscFunctionReturn(0);
15350e95ebc0SSatish Balay }
15360e95ebc0SSatish Balay 
15374a2ae208SSatish Balay #undef __FUNCT__
15384a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1539f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15400ac07820SSatish Balay {
15410ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15426849ba73SBarry Smith   PetscErrorCode ierr;
1543b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1544d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
1545b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1546b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15477adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1548d0f46423SBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap->rstart;
15497adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15500ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15510ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15526543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15536543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15546543fbbaSBarry Smith #endif
15550ac07820SSatish Balay 
1556d64ed03dSBarry Smith   PetscFunctionBegin;
15570ac07820SSatish Balay   /*  first count number of contributors to each processor */
1558b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1559b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1560b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15616543fbbaSBarry Smith   j = 0;
15620ac07820SSatish Balay   for (i=0; i<N; i++) {
15636543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15646543fbbaSBarry Smith     lastidx = idx;
15656543fbbaSBarry Smith     for (; j<size; j++) {
1566357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15676543fbbaSBarry Smith         nprocs[2*j]++;
15686543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15696543fbbaSBarry Smith         owner[i] = j;
15706543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15716543fbbaSBarry Smith         found = PETSC_TRUE;
15726543fbbaSBarry Smith #endif
15736543fbbaSBarry Smith         break;
15740ac07820SSatish Balay       }
15750ac07820SSatish Balay     }
15766543fbbaSBarry Smith #if defined(PETSC_DEBUG)
1577e32f2f54SBarry Smith     if (!found) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15786543fbbaSBarry Smith     found = PETSC_FALSE;
15796543fbbaSBarry Smith #endif
15800ac07820SSatish Balay   }
1581c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
15820ac07820SSatish Balay 
15830ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1584c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
15850ac07820SSatish Balay 
15860ac07820SSatish Balay   /* post receives:   */
1587b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1588b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
15890ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1590b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
15910ac07820SSatish Balay   }
15920ac07820SSatish Balay 
15930ac07820SSatish Balay   /* do sends:
15940ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
15950ac07820SSatish Balay      the ith processor
15960ac07820SSatish Balay   */
1597b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1598b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1599b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16000ac07820SSatish Balay   starts[0]  = 0;
1601c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16020ac07820SSatish Balay   for (i=0; i<N; i++) {
16030ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16040ac07820SSatish Balay   }
16050ac07820SSatish Balay 
16060ac07820SSatish Balay   starts[0] = 0;
1607c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16080ac07820SSatish Balay   count = 0;
16090ac07820SSatish Balay   for (i=0; i<size; i++) {
1610c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1611b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16120ac07820SSatish Balay     }
16130ac07820SSatish Balay   }
1614606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16150ac07820SSatish Balay 
1616357c27ecSBarry Smith   base = owners[rank];
16170ac07820SSatish Balay 
16180ac07820SSatish Balay   /*  wait on receives */
1619fca92195SBarry Smith   ierr   = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr);
1620fca92195SBarry Smith   count  = nrecvs;
1621fca92195SBarry Smith   slen = 0;
16220ac07820SSatish Balay   while (count) {
1623ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16240ac07820SSatish Balay     /* unpack receives into our local space */
1625b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16260ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16270ac07820SSatish Balay     lens[imdex]    = n;
16280ac07820SSatish Balay     slen          += n;
16290ac07820SSatish Balay     count--;
16300ac07820SSatish Balay   }
1631606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16320ac07820SSatish Balay 
16330ac07820SSatish Balay   /* move the data into the send scatter */
1634b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16350ac07820SSatish Balay   count = 0;
16360ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16370ac07820SSatish Balay     values = rvalues + i*nmax;
16380ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16390ac07820SSatish Balay       lrows[count++] = values[j] - base;
16400ac07820SSatish Balay     }
16410ac07820SSatish Balay   }
1642606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1643fca92195SBarry Smith   ierr = PetscFree2(lens,source);CHKERRQ(ierr);
1644606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1645606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16460ac07820SSatish Balay 
16470ac07820SSatish Balay   /* actually zap the local rows */
164872dacd9aSBarry Smith   /*
164972dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1650a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
165172dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
165272dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
165372dacd9aSBarry Smith 
165472dacd9aSBarry Smith   */
16559c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1656f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1657d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1658f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1659f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1660f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1661e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1662512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
1663a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1664a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1665f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1666a07cd24cSSatish Balay     }
1667a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1668a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16699c957beeSSatish Balay   } else {
1670f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1671a07cd24cSSatish Balay   }
16729c957beeSSatish Balay 
1673606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1674a07cd24cSSatish Balay 
16750ac07820SSatish Balay   /* wait on sends */
16760ac07820SSatish Balay   if (nsends) {
167782502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1678ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1679606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
16800ac07820SSatish Balay   }
1681606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1682606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
16830ac07820SSatish Balay 
16843a40ed3dSBarry Smith   PetscFunctionReturn(0);
16850ac07820SSatish Balay }
168672dacd9aSBarry Smith 
16874a2ae208SSatish Balay #undef __FUNCT__
16884a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1689dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1690bb5a7306SBarry Smith {
1691bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1692dfbe8321SBarry Smith   PetscErrorCode ierr;
1693d64ed03dSBarry Smith 
1694d64ed03dSBarry Smith   PetscFunctionBegin;
1695bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
16963a40ed3dSBarry Smith   PetscFunctionReturn(0);
1697bb5a7306SBarry Smith }
1698bb5a7306SBarry Smith 
16996849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17000ac07820SSatish Balay 
17014a2ae208SSatish Balay #undef __FUNCT__
17024a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1703dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17047fc3c18eSBarry Smith {
17057fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17067fc3c18eSBarry Smith   Mat            a,b,c,d;
17077fc3c18eSBarry Smith   PetscTruth     flg;
1708dfbe8321SBarry Smith   PetscErrorCode ierr;
17097fc3c18eSBarry Smith 
17107fc3c18eSBarry Smith   PetscFunctionBegin;
17117fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17127fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17137fc3c18eSBarry Smith 
17147fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1715abc0a331SBarry Smith   if (flg) {
17167fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17177fc3c18eSBarry Smith   }
17187adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17197fc3c18eSBarry Smith   PetscFunctionReturn(0);
17207fc3c18eSBarry Smith }
17217fc3c18eSBarry Smith 
17223c896bc6SHong Zhang #undef __FUNCT__
17233c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17243c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17253c896bc6SHong Zhang {
17263c896bc6SHong Zhang   PetscErrorCode ierr;
17273c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17283c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17293c896bc6SHong Zhang 
17303c896bc6SHong Zhang   PetscFunctionBegin;
17313c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17323c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17333c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17343c896bc6SHong Zhang   } else {
17353c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17363c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17373c896bc6SHong Zhang   }
17383c896bc6SHong Zhang   PetscFunctionReturn(0);
17393c896bc6SHong Zhang }
1740273d9f13SBarry Smith 
17414a2ae208SSatish Balay #undef __FUNCT__
17424a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1743dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1744273d9f13SBarry Smith {
1745dfbe8321SBarry Smith   PetscErrorCode ierr;
1746273d9f13SBarry Smith 
1747273d9f13SBarry Smith   PetscFunctionBegin;
1748db4efbfdSBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1749273d9f13SBarry Smith   PetscFunctionReturn(0);
1750273d9f13SBarry Smith }
1751273d9f13SBarry Smith 
17524fe895cdSHong Zhang #undef __FUNCT__
17534fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17544fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17554fe895cdSHong Zhang {
17564fe895cdSHong Zhang   PetscErrorCode ierr;
17574fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17584fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17594fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17604fe895cdSHong Zhang 
17614fe895cdSHong Zhang   PetscFunctionBegin;
17624fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17634fe895cdSHong Zhang     PetscScalar alpha = a;
17644fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17654fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17660805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17674fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17684fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17694fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17700805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17714fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17724fe895cdSHong Zhang   } else {
17734fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17744fe895cdSHong Zhang   }
17754fe895cdSHong Zhang   PetscFunctionReturn(0);
17764fe895cdSHong Zhang }
17774fe895cdSHong Zhang 
177899cafbc1SBarry Smith #undef __FUNCT__
177941c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ"
178041c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs)
178141c166b1SJed Brown {
178241c166b1SJed Brown   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1783829b6ff0SJed Brown   PetscInt rbs,cbs;
178441c166b1SJed Brown   PetscErrorCode ierr;
178541c166b1SJed Brown 
178641c166b1SJed Brown   PetscFunctionBegin;
178741c166b1SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
178841c166b1SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
1789829b6ff0SJed Brown   ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr);
1790829b6ff0SJed Brown   ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr);
1791e32f2f54SBarry Smith   if (rbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs);
1792e32f2f54SBarry Smith   if (cbs != bs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs);
179341c166b1SJed Brown   PetscFunctionReturn(0);
179441c166b1SJed Brown }
179541c166b1SJed Brown 
179641c166b1SJed Brown #undef __FUNCT__
179799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
179899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
179999cafbc1SBarry Smith {
180099cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
180199cafbc1SBarry Smith   PetscErrorCode ierr;
180299cafbc1SBarry Smith 
180399cafbc1SBarry Smith   PetscFunctionBegin;
180499cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
180599cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
180699cafbc1SBarry Smith   PetscFunctionReturn(0);
180799cafbc1SBarry Smith }
180899cafbc1SBarry Smith 
180999cafbc1SBarry Smith #undef __FUNCT__
181099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
181199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
181299cafbc1SBarry Smith {
181399cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
181499cafbc1SBarry Smith   PetscErrorCode ierr;
181599cafbc1SBarry Smith 
181699cafbc1SBarry Smith   PetscFunctionBegin;
181799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
181899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
181999cafbc1SBarry Smith   PetscFunctionReturn(0);
182099cafbc1SBarry Smith }
182199cafbc1SBarry Smith 
182282094794SBarry Smith #undef __FUNCT__
182382094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
18244aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
18254aa3045dSJed Brown {
18264aa3045dSJed Brown   PetscErrorCode ierr;
18274aa3045dSJed Brown   IS             iscol_local;
18284aa3045dSJed Brown   PetscInt       csize;
18294aa3045dSJed Brown 
18304aa3045dSJed Brown   PetscFunctionBegin;
18314aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1832b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1833b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1834e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1835b79d0421SJed Brown   } else {
18364aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1837b79d0421SJed Brown   }
18384aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1839b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1840b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
18414aa3045dSJed Brown     ierr = ISDestroy(iscol_local);CHKERRQ(ierr);
1842b79d0421SJed Brown   }
18434aa3045dSJed Brown   PetscFunctionReturn(0);
18444aa3045dSJed Brown }
18454aa3045dSJed Brown 
18464aa3045dSJed Brown #undef __FUNCT__
18474aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
184882094794SBarry Smith /*
184982094794SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqBAIJ
185082094794SBarry Smith   in local and then by concatenating the local matrices the end result.
185182094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
185282094794SBarry Smith */
18534aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
185482094794SBarry Smith {
185582094794SBarry Smith   PetscErrorCode ierr;
185682094794SBarry Smith   PetscMPIInt    rank,size;
185782094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
185882094794SBarry Smith   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
185982094794SBarry Smith   Mat            *local,M,Mreuse;
186082094794SBarry Smith   MatScalar      *vwork,*aa;
186182094794SBarry Smith   MPI_Comm       comm = ((PetscObject)mat)->comm;
186282094794SBarry Smith   Mat_SeqBAIJ    *aij;
186382094794SBarry Smith 
186482094794SBarry Smith 
186582094794SBarry Smith   PetscFunctionBegin;
186682094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
186782094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
186882094794SBarry Smith 
186982094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
187082094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
1871e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
187282094794SBarry Smith     local = &Mreuse;
187382094794SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
187482094794SBarry Smith   } else {
187582094794SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
187682094794SBarry Smith     Mreuse = *local;
187782094794SBarry Smith     ierr   = PetscFree(local);CHKERRQ(ierr);
187882094794SBarry Smith   }
187982094794SBarry Smith 
188082094794SBarry Smith   /*
188182094794SBarry Smith       m - number of local rows
188282094794SBarry Smith       n - number of columns (same on all processors)
188382094794SBarry Smith       rstart - first row in new global matrix generated
188482094794SBarry Smith   */
188582094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
188682094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
188782094794SBarry Smith   m    = m/bs;
188882094794SBarry Smith   n    = n/bs;
188982094794SBarry Smith 
189082094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
189182094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
189282094794SBarry Smith     ii  = aij->i;
189382094794SBarry Smith     jj  = aij->j;
189482094794SBarry Smith 
189582094794SBarry Smith     /*
189682094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
189782094794SBarry Smith         portions of the matrix in order to do correct preallocation
189882094794SBarry Smith     */
189982094794SBarry Smith 
190082094794SBarry Smith     /* first get start and end of "diagonal" columns */
190182094794SBarry Smith     if (csize == PETSC_DECIDE) {
190282094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
190382094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
190482094794SBarry Smith 	nlocal = m;
190582094794SBarry Smith       } else {
190682094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
190782094794SBarry Smith       }
190882094794SBarry Smith     } else {
190982094794SBarry Smith       nlocal = csize/bs;
191082094794SBarry Smith     }
191182094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
191282094794SBarry Smith     rstart = rend - nlocal;
191365e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
191482094794SBarry Smith 
191582094794SBarry Smith     /* next, compute all the lengths */
191682094794SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
191782094794SBarry Smith     olens = dlens + m;
191882094794SBarry Smith     for (i=0; i<m; i++) {
191982094794SBarry Smith       jend = ii[i+1] - ii[i];
192082094794SBarry Smith       olen = 0;
192182094794SBarry Smith       dlen = 0;
192282094794SBarry Smith       for (j=0; j<jend; j++) {
192382094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
192482094794SBarry Smith         else dlen++;
192582094794SBarry Smith         jj++;
192682094794SBarry Smith       }
192782094794SBarry Smith       olens[i] = olen;
192882094794SBarry Smith       dlens[i] = dlen;
192982094794SBarry Smith     }
193082094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
193182094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
193282094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
193382094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
193482094794SBarry Smith     ierr = PetscFree(dlens);CHKERRQ(ierr);
193582094794SBarry Smith   } else {
193682094794SBarry Smith     PetscInt ml,nl;
193782094794SBarry Smith 
193882094794SBarry Smith     M = *newmat;
193982094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
1940e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
194182094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
194282094794SBarry Smith     /*
194382094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
194482094794SBarry Smith        rather than the slower MatSetValues().
194582094794SBarry Smith     */
194682094794SBarry Smith     M->was_assembled = PETSC_TRUE;
194782094794SBarry Smith     M->assembled     = PETSC_FALSE;
194882094794SBarry Smith   }
194982094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
195082094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
195182094794SBarry Smith   aij = (Mat_SeqBAIJ*)(Mreuse)->data;
195282094794SBarry Smith   ii  = aij->i;
195382094794SBarry Smith   jj  = aij->j;
195482094794SBarry Smith   aa  = aij->a;
195582094794SBarry Smith   for (i=0; i<m; i++) {
195682094794SBarry Smith     row   = rstart/bs + i;
195782094794SBarry Smith     nz    = ii[i+1] - ii[i];
195882094794SBarry Smith     cwork = jj;     jj += nz;
195982094794SBarry Smith     vwork = aa;     aa += nz;
196082094794SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
196182094794SBarry Smith   }
196282094794SBarry Smith 
196382094794SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
196482094794SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
196582094794SBarry Smith   *newmat = M;
196682094794SBarry Smith 
196782094794SBarry Smith   /* save submatrix used in processor for next request */
196882094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
196982094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
197082094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
197182094794SBarry Smith   }
197282094794SBarry Smith 
197382094794SBarry Smith   PetscFunctionReturn(0);
197482094794SBarry Smith }
197582094794SBarry Smith 
197682094794SBarry Smith #undef __FUNCT__
197782094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
197882094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
197982094794SBarry Smith {
198082094794SBarry Smith   MPI_Comm       comm,pcomm;
198182094794SBarry Smith   PetscInt       first,local_size,nrows;
198282094794SBarry Smith   const PetscInt *rows;
1983dbf0e21dSBarry Smith   PetscMPIInt    size;
198482094794SBarry Smith   IS             crowp,growp,irowp,lrowp,lcolp,icolp;
198582094794SBarry Smith   PetscErrorCode ierr;
198682094794SBarry Smith 
198782094794SBarry Smith   PetscFunctionBegin;
198882094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
198982094794SBarry Smith   /* make a collective version of 'rowp' */
199082094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
199182094794SBarry Smith   if (pcomm==comm) {
199282094794SBarry Smith     crowp = rowp;
199382094794SBarry Smith   } else {
199482094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
199582094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
199682094794SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr);
199782094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
199882094794SBarry Smith   }
199982094794SBarry Smith   /* collect the global row permutation and invert it */
200082094794SBarry Smith   ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr);
200182094794SBarry Smith   ierr = ISSetPermutation(growp);CHKERRQ(ierr);
200282094794SBarry Smith   if (pcomm!=comm) {
200382094794SBarry Smith     ierr = ISDestroy(crowp);CHKERRQ(ierr);
200482094794SBarry Smith   }
200582094794SBarry Smith   ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr);
200682094794SBarry Smith   /* get the local target indices */
200782094794SBarry Smith   ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr);
200882094794SBarry Smith   ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr);
200982094794SBarry Smith   ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr);
201082094794SBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr);
201182094794SBarry Smith   ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr);
201282094794SBarry Smith   ierr = ISDestroy(irowp);CHKERRQ(ierr);
201382094794SBarry Smith   /* the column permutation is so much easier;
201482094794SBarry Smith      make a local version of 'colp' and invert it */
201582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2016dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2017dbf0e21dSBarry Smith   if (size==1) {
201882094794SBarry Smith     lcolp = colp;
201982094794SBarry Smith   } else {
202082094794SBarry Smith     ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr);
202182094794SBarry Smith     ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr);
202282094794SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr);
202382094794SBarry Smith   }
2024dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
202582094794SBarry Smith   ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr);
20264aa3045dSJed Brown   ierr = ISSetPermutation(icolp);CHKERRQ(ierr);
2027dbf0e21dSBarry Smith   if (size>1) {
202882094794SBarry Smith     ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr);
202982094794SBarry Smith     ierr = ISDestroy(lcolp);CHKERRQ(ierr);
203082094794SBarry Smith   }
203182094794SBarry Smith   /* now we just get the submatrix */
20324aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
203382094794SBarry Smith   /* clean up */
203482094794SBarry Smith   ierr = ISDestroy(lrowp);CHKERRQ(ierr);
203582094794SBarry Smith   ierr = ISDestroy(icolp);CHKERRQ(ierr);
203682094794SBarry Smith   PetscFunctionReturn(0);
203782094794SBarry Smith }
203882094794SBarry Smith 
20398c7482ecSBarry Smith #undef __FUNCT__
20408c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
20418c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
20428c7482ecSBarry Smith {
20438c7482ecSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*) mat->data;
20448c7482ecSBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
20458c7482ecSBarry Smith 
20468c7482ecSBarry Smith   PetscFunctionBegin;
20478c7482ecSBarry Smith   if (nghosts) { *nghosts = B->nbs;}
20488c7482ecSBarry Smith   if (ghosts) {*ghosts = baij->garray;}
20498c7482ecSBarry Smith   PetscFunctionReturn(0);
20508c7482ecSBarry Smith }
20518c7482ecSBarry Smith 
2052f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat);
2053f6d58c54SBarry Smith 
2054f6d58c54SBarry Smith #undef __FUNCT__
2055f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ"
2056f6d58c54SBarry Smith /*
2057f6d58c54SBarry Smith     This routine is almost identical to MatFDColoringCreate_MPIBAIJ()!
2058f6d58c54SBarry Smith */
2059f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c)
2060f6d58c54SBarry Smith {
2061f6d58c54SBarry Smith   Mat_MPIBAIJ            *baij = (Mat_MPIBAIJ*)mat->data;
2062f6d58c54SBarry Smith   PetscErrorCode        ierr;
2063f6d58c54SBarry Smith   PetscMPIInt           size,*ncolsonproc,*disp,nn;
2064f6d58c54SBarry Smith   PetscInt              bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col;
2065f6d58c54SBarry Smith   const PetscInt        *is;
2066f6d58c54SBarry Smith   PetscInt              nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj;
2067f6d58c54SBarry Smith   PetscInt              *rowhit,M,cstart,cend,colb;
2068f6d58c54SBarry Smith   PetscInt              *columnsforrow,l;
2069f6d58c54SBarry Smith   IS                    *isa;
2070f6d58c54SBarry Smith   PetscTruth             done,flg;
2071f6d58c54SBarry Smith   ISLocalToGlobalMapping map = mat->bmapping;
2072f6d58c54SBarry Smith   PetscInt               *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype;
2073f6d58c54SBarry Smith 
2074f6d58c54SBarry Smith   PetscFunctionBegin;
2075e7e72b3dSBarry Smith   if (!mat->assembled) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();");
2076e7e72b3dSBarry Smith   if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(((PetscObject)mat)->comm,PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock");
2077f6d58c54SBarry Smith 
2078f6d58c54SBarry Smith   ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr);
2079f6d58c54SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
2080f6d58c54SBarry Smith   M                = mat->rmap->n/bs;
2081f6d58c54SBarry Smith   cstart           = mat->cmap->rstart/bs;
2082f6d58c54SBarry Smith   cend             = mat->cmap->rend/bs;
2083f6d58c54SBarry Smith   c->M             = mat->rmap->N/bs;  /* set the global rows and columns and local rows */
2084f6d58c54SBarry Smith   c->N             = mat->cmap->N/bs;
2085f6d58c54SBarry Smith   c->m             = mat->rmap->n/bs;
2086f6d58c54SBarry Smith   c->rstart        = mat->rmap->rstart/bs;
2087f6d58c54SBarry Smith 
2088f6d58c54SBarry Smith   c->ncolors       = nis;
2089f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr);
2090f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr);
2091f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr);
2092f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr);
2093f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr);
2094f6d58c54SBarry Smith   ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr);
2095f6d58c54SBarry Smith 
2096f6d58c54SBarry Smith   /* Allow access to data structures of local part of matrix */
2097f6d58c54SBarry Smith   if (!baij->colmap) {
2098f6d58c54SBarry Smith     ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
2099f6d58c54SBarry Smith   }
2100f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2101f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2102f6d58c54SBarry Smith 
2103f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr);
2104f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr);
2105f6d58c54SBarry Smith 
2106f6d58c54SBarry Smith   for (i=0; i<nis; i++) {
2107f6d58c54SBarry Smith     ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr);
2108f6d58c54SBarry Smith     ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr);
2109f6d58c54SBarry Smith     c->ncolumns[i] = n;
2110f6d58c54SBarry Smith     if (n) {
2111f6d58c54SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr);
2112f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr);
2113f6d58c54SBarry Smith       ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr);
2114f6d58c54SBarry Smith     } else {
2115f6d58c54SBarry Smith       c->columns[i]  = 0;
2116f6d58c54SBarry Smith     }
2117f6d58c54SBarry Smith 
2118f6d58c54SBarry Smith     if (ctype == IS_COLORING_GLOBAL){
2119f6d58c54SBarry Smith       /* Determine the total (parallel) number of columns of this color */
2120f6d58c54SBarry Smith       ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
2121fca92195SBarry Smith       ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr);
2122f6d58c54SBarry Smith 
2123f6d58c54SBarry Smith       nn   = PetscMPIIntCast(n);
2124f6d58c54SBarry Smith       ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2125f6d58c54SBarry Smith       nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];}
2126f6d58c54SBarry Smith       if (!nctot) {
2127f6d58c54SBarry Smith         ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr);
2128f6d58c54SBarry Smith       }
2129f6d58c54SBarry Smith 
2130f6d58c54SBarry Smith       disp[0] = 0;
2131f6d58c54SBarry Smith       for (j=1; j<size; j++) {
2132f6d58c54SBarry Smith         disp[j] = disp[j-1] + ncolsonproc[j-1];
2133f6d58c54SBarry Smith       }
2134f6d58c54SBarry Smith 
2135f6d58c54SBarry Smith       /* Get complete list of columns for color on each processor */
2136f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2137f6d58c54SBarry Smith       ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2138fca92195SBarry Smith       ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr);
2139f6d58c54SBarry Smith     } else if (ctype == IS_COLORING_GHOSTED){
2140f6d58c54SBarry Smith       /* Determine local number of columns of this color on this process, including ghost points */
2141f6d58c54SBarry Smith       nctot = n;
2142f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2143f6d58c54SBarry Smith       ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr);
2144f6d58c54SBarry Smith     } else {
2145e32f2f54SBarry Smith       SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Not provided for this MatFDColoring type");
2146f6d58c54SBarry Smith     }
2147f6d58c54SBarry Smith 
2148f6d58c54SBarry Smith     /*
2149f6d58c54SBarry Smith        Mark all rows affect by these columns
2150f6d58c54SBarry Smith     */
2151f6d58c54SBarry Smith     /* Temporary option to allow for debugging/testing */
2152f6d58c54SBarry Smith     flg  = PETSC_FALSE;
2153f6d58c54SBarry Smith     ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr);
2154f6d58c54SBarry Smith     if (!flg) {/*-----------------------------------------------------------------------------*/
2155f6d58c54SBarry Smith       /* crude, fast version */
2156f6d58c54SBarry Smith       ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr);
2157f6d58c54SBarry Smith       /* loop over columns*/
2158f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2159f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2160f6d58c54SBarry Smith           col = ltog[cols[j]];
2161f6d58c54SBarry Smith         } else {
2162f6d58c54SBarry Smith           col  = cols[j];
2163f6d58c54SBarry Smith         }
2164f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2165f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2166f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2167f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2168f6d58c54SBarry Smith         } else {
2169f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2170cb9801acSJed Brown           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2171f6d58c54SBarry Smith 	  colb --;
2172f6d58c54SBarry Smith #else
2173f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2174f6d58c54SBarry Smith #endif
2175f6d58c54SBarry Smith           if (colb == -1) {
2176f6d58c54SBarry Smith             m = 0;
2177f6d58c54SBarry Smith           } else {
2178f6d58c54SBarry Smith             colb = colb/bs;
2179f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2180f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2181f6d58c54SBarry Smith           }
2182f6d58c54SBarry Smith         }
2183f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2184f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2185f6d58c54SBarry Smith           rowhit[*rows++] = col + 1;
2186f6d58c54SBarry Smith         }
2187f6d58c54SBarry Smith       }
2188f6d58c54SBarry Smith 
2189f6d58c54SBarry Smith       /* count the number of hits */
2190f6d58c54SBarry Smith       nrows = 0;
2191f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2192f6d58c54SBarry Smith         if (rowhit[j]) nrows++;
2193f6d58c54SBarry Smith       }
2194f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2195f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2196f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2197f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2198f6d58c54SBarry Smith       nrows = 0;
2199f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2200f6d58c54SBarry Smith         if (rowhit[j]) {
2201f6d58c54SBarry Smith           c->rows[i][nrows]           = j;
2202f6d58c54SBarry Smith           c->columnsforrow[i][nrows] = rowhit[j] - 1;
2203f6d58c54SBarry Smith           nrows++;
2204f6d58c54SBarry Smith         }
2205f6d58c54SBarry Smith       }
2206f6d58c54SBarry Smith     } else {/*-------------------------------------------------------------------------------*/
2207f6d58c54SBarry Smith       /* slow version, using rowhit as a linked list */
2208f6d58c54SBarry Smith       PetscInt currentcol,fm,mfm;
2209f6d58c54SBarry Smith       rowhit[M] = M;
2210f6d58c54SBarry Smith       nrows     = 0;
2211f6d58c54SBarry Smith       /* loop over columns*/
2212f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2213f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2214f6d58c54SBarry Smith           col = ltog[cols[j]];
2215f6d58c54SBarry Smith         } else {
2216f6d58c54SBarry Smith           col  = cols[j];
2217f6d58c54SBarry Smith         }
2218f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2219f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2220f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2221f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2222f6d58c54SBarry Smith         } else {
2223f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2224f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2225f6d58c54SBarry Smith           colb --;
2226f6d58c54SBarry Smith #else
2227f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2228f6d58c54SBarry Smith #endif
2229f6d58c54SBarry Smith           if (colb == -1) {
2230f6d58c54SBarry Smith             m = 0;
2231f6d58c54SBarry Smith           } else {
2232f6d58c54SBarry Smith             colb = colb/bs;
2233f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2234f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2235f6d58c54SBarry Smith           }
2236f6d58c54SBarry Smith         }
2237f6d58c54SBarry Smith 
2238f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2239f6d58c54SBarry Smith         fm    = M; /* fm points to first entry in linked list */
2240f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2241f6d58c54SBarry Smith           currentcol = *rows++;
2242f6d58c54SBarry Smith 	  /* is it already in the list? */
2243f6d58c54SBarry Smith           do {
2244f6d58c54SBarry Smith             mfm  = fm;
2245f6d58c54SBarry Smith             fm   = rowhit[fm];
2246f6d58c54SBarry Smith           } while (fm < currentcol);
2247f6d58c54SBarry Smith           /* not in list so add it */
2248f6d58c54SBarry Smith           if (fm != currentcol) {
2249f6d58c54SBarry Smith             nrows++;
2250f6d58c54SBarry Smith             columnsforrow[currentcol] = col;
2251f6d58c54SBarry Smith             /* next three lines insert new entry into linked list */
2252f6d58c54SBarry Smith             rowhit[mfm]               = currentcol;
2253f6d58c54SBarry Smith             rowhit[currentcol]        = fm;
2254f6d58c54SBarry Smith             fm                        = currentcol;
2255f6d58c54SBarry Smith             /* fm points to present position in list since we know the columns are sorted */
2256f6d58c54SBarry Smith           } else {
2257e32f2f54SBarry Smith             SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Invalid coloring of matrix detected");
2258f6d58c54SBarry Smith           }
2259f6d58c54SBarry Smith         }
2260f6d58c54SBarry Smith       }
2261f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2262f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2263f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2264f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2265f6d58c54SBarry Smith       /* now store the linked list of rows into c->rows[i] */
2266f6d58c54SBarry Smith       nrows = 0;
2267f6d58c54SBarry Smith       fm    = rowhit[M];
2268f6d58c54SBarry Smith       do {
2269f6d58c54SBarry Smith         c->rows[i][nrows]            = fm;
2270f6d58c54SBarry Smith         c->columnsforrow[i][nrows++] = columnsforrow[fm];
2271f6d58c54SBarry Smith         fm                           = rowhit[fm];
2272f6d58c54SBarry Smith       } while (fm < M);
2273f6d58c54SBarry Smith     } /* ---------------------------------------------------------------------------------------*/
2274f6d58c54SBarry Smith     ierr = PetscFree(cols);CHKERRQ(ierr);
2275f6d58c54SBarry Smith   }
2276f6d58c54SBarry Smith 
2277f6d58c54SBarry Smith   /* Optimize by adding the vscale, and scaleforrow[][] fields */
2278f6d58c54SBarry Smith   /*
2279f6d58c54SBarry Smith        vscale will contain the "diagonal" on processor scalings followed by the off processor
2280f6d58c54SBarry Smith   */
2281f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) {
2282f6d58c54SBarry Smith     PetscInt *garray;
2283f6d58c54SBarry Smith     ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr);
2284f6d58c54SBarry Smith     for (i=0; i<baij->B->cmap->n/bs; i++) {
2285f6d58c54SBarry Smith       for (j=0; j<bs; j++) {
2286f6d58c54SBarry Smith         garray[i*bs+j] = bs*baij->garray[i]+j;
2287f6d58c54SBarry Smith       }
2288f6d58c54SBarry Smith     }
2289f6d58c54SBarry Smith     ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr);
2290f6d58c54SBarry Smith     ierr = PetscFree(garray);CHKERRQ(ierr);
2291f6d58c54SBarry Smith     CHKMEMQ;
2292f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2293f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2294f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2295f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2296f6d58c54SBarry Smith         col = c->columnsforrow[k][l];
2297f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2298f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2299f6d58c54SBarry Smith           colb = col - cstart;
2300f6d58c54SBarry Smith         } else {
2301f6d58c54SBarry Smith           /* column  is in "off-processor" part */
2302f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2303f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2304f6d58c54SBarry Smith           colb --;
2305f6d58c54SBarry Smith #else
2306f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2307f6d58c54SBarry Smith #endif
2308f6d58c54SBarry Smith           colb = colb/bs;
2309f6d58c54SBarry Smith           colb += cend - cstart;
2310f6d58c54SBarry Smith         }
2311f6d58c54SBarry Smith         c->vscaleforrow[k][l] = colb;
2312f6d58c54SBarry Smith       }
2313f6d58c54SBarry Smith     }
2314f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GHOSTED) {
2315f6d58c54SBarry Smith     /* Get gtol mapping */
2316f6d58c54SBarry Smith     PetscInt N = mat->cmap->N, *gtol;
2317f6d58c54SBarry Smith     ierr = PetscMalloc((N+1)*sizeof(PetscInt),&gtol);CHKERRQ(ierr);
2318f6d58c54SBarry Smith     for (i=0; i<N; i++) gtol[i] = -1;
2319f6d58c54SBarry Smith     for (i=0; i<map->n; i++) gtol[ltog[i]] = i;
2320f6d58c54SBarry Smith 
2321f6d58c54SBarry Smith     c->vscale = 0; /* will be created in MatFDColoringApply() */
2322f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2323f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2324f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2325f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2326f6d58c54SBarry Smith         col = c->columnsforrow[k][l];      /* global column index */
2327f6d58c54SBarry Smith         c->vscaleforrow[k][l] = gtol[col]; /* local column index */
2328f6d58c54SBarry Smith       }
2329f6d58c54SBarry Smith     }
2330f6d58c54SBarry Smith     ierr = PetscFree(gtol);CHKERRQ(ierr);
2331f6d58c54SBarry Smith   }
2332f6d58c54SBarry Smith   ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr);
2333f6d58c54SBarry Smith 
2334f6d58c54SBarry Smith   ierr = PetscFree(rowhit);CHKERRQ(ierr);
2335f6d58c54SBarry Smith   ierr = PetscFree(columnsforrow);CHKERRQ(ierr);
2336f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2337f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2338f6d58c54SBarry Smith     CHKMEMQ;
2339f6d58c54SBarry Smith   PetscFunctionReturn(0);
2340f6d58c54SBarry Smith }
2341f6d58c54SBarry Smith 
2342f6d58c54SBarry Smith #undef __FUNCT__
2343f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ"
2344f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat)
2345f6d58c54SBarry Smith {
2346f6d58c54SBarry Smith   Mat            B;
2347f6d58c54SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
2348f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2349f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2350f6d58c54SBarry Smith   PetscErrorCode ierr;
2351f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2352f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2353f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2354f6d58c54SBarry Smith 
2355f6d58c54SBarry Smith   PetscFunctionBegin;
2356f6d58c54SBarry Smith   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2357f6d58c54SBarry Smith   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2358f6d58c54SBarry Smith 
2359f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2360f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2361f6d58c54SBarry Smith   */
2362f6d58c54SBarry Smith   ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
2363f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2364f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2365f6d58c54SBarry Smith   }
2366f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2367f6d58c54SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr);
2368f6d58c54SBarry Smith   displs     = recvcounts + size;
2369f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2370f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2371f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2372f6d58c54SBarry Smith   }
2373f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2374f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2375f6d58c54SBarry Smith #else
2376f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2377f6d58c54SBarry Smith #endif
2378f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2379f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2380f6d58c54SBarry Smith   */
2381f6d58c54SBarry Smith   ierr  = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2382f6d58c54SBarry Smith   ierr  = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2383f6d58c54SBarry Smith   ierr  = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2384f6d58c54SBarry Smith   ierr  = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2385f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2386f6d58c54SBarry Smith 
2387f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2388f6d58c54SBarry Smith     Copy my part of matrix column indices over
2389f6d58c54SBarry Smith   */
2390f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2391f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2392f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2393f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2394f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2395f6d58c54SBarry Smith   cnt        = 0;
2396f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2397f6d58c54SBarry Smith 
2398f6d58c54SBarry Smith     /* put in lower diagonal portion */
2399f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2400f6d58c54SBarry Smith     while (m > 0) {
2401f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2402f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2403f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2404f6d58c54SBarry Smith       m--;
2405f6d58c54SBarry Smith     }
2406f6d58c54SBarry Smith 
2407f6d58c54SBarry Smith     /* put in diagonal portion */
2408f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2409f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2410f6d58c54SBarry Smith     }
2411f6d58c54SBarry Smith 
2412f6d58c54SBarry Smith     /* put in upper diagonal portion */
2413f6d58c54SBarry Smith     while (m-- > 0) {
2414f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2415f6d58c54SBarry Smith     }
2416f6d58c54SBarry Smith   }
2417e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2418f6d58c54SBarry Smith 
2419f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2420f6d58c54SBarry Smith     Gather all column indices to all processors
2421f6d58c54SBarry Smith   */
2422f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2423f6d58c54SBarry Smith     recvcounts[i] = 0;
2424f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2425f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2426f6d58c54SBarry Smith     }
2427f6d58c54SBarry Smith   }
2428f6d58c54SBarry Smith   displs[0]  = 0;
2429f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2430f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2431f6d58c54SBarry Smith   }
2432f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2433f6d58c54SBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2434f6d58c54SBarry Smith #else
2435f6d58c54SBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2436f6d58c54SBarry Smith #endif
2437f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2438f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2439f6d58c54SBarry Smith   */
2440f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2441f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2442f6d58c54SBarry Smith   /* set the b->i indices */
2443f6d58c54SBarry Smith   b->i[0] = 0;
2444f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2445f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2446f6d58c54SBarry Smith   }
2447f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2448f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2449f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2450f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2451f6d58c54SBarry Smith 
2452f6d58c54SBarry Smith   if (A->symmetric){
2453f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2454f6d58c54SBarry Smith   } else if (A->hermitian) {
2455f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2456f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2457f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2458f6d58c54SBarry Smith   }
2459f6d58c54SBarry Smith   *newmat = B;
2460f6d58c54SBarry Smith   PetscFunctionReturn(0);
2461f6d58c54SBarry Smith }
2462f6d58c54SBarry Smith 
2463b1a666ecSBarry Smith #undef __FUNCT__
2464b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2465b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2466b1a666ecSBarry Smith {
2467b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2468b1a666ecSBarry Smith   PetscErrorCode ierr;
2469b1a666ecSBarry Smith   Vec            bb1 = 0;
2470b1a666ecSBarry Smith 
2471b1a666ecSBarry Smith   PetscFunctionBegin;
2472b1a666ecSBarry Smith   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
2473b1a666ecSBarry Smith     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2474b1a666ecSBarry Smith   }
2475b1a666ecSBarry Smith 
2476b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2477b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2478b1a666ecSBarry Smith     PetscFunctionReturn(0);
2479b1a666ecSBarry Smith   }
2480b1a666ecSBarry Smith 
2481b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2482b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2483b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2484b1a666ecSBarry Smith       its--;
2485b1a666ecSBarry Smith     }
2486b1a666ecSBarry Smith 
2487b1a666ecSBarry Smith     while (its--) {
2488b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2489b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2490b1a666ecSBarry Smith 
2491b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2492b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2493b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2494b1a666ecSBarry Smith 
2495b1a666ecSBarry Smith       /* local sweep */
2496b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2497b1a666ecSBarry Smith     }
2498b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
2499b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2500b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2501b1a666ecSBarry Smith       its--;
2502b1a666ecSBarry Smith     }
2503b1a666ecSBarry Smith     while (its--) {
2504b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2505b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2506b1a666ecSBarry Smith 
2507b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2508b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2509b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2510b1a666ecSBarry Smith 
2511b1a666ecSBarry Smith       /* local sweep */
2512b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2513b1a666ecSBarry Smith     }
2514b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
2515b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2516b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2517b1a666ecSBarry Smith       its--;
2518b1a666ecSBarry Smith     }
2519b1a666ecSBarry Smith     while (its--) {
2520b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2521b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2522b1a666ecSBarry Smith 
2523b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2524b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2525b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2526b1a666ecSBarry Smith 
2527b1a666ecSBarry Smith       /* local sweep */
2528b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2529b1a666ecSBarry Smith     }
2530e7e72b3dSBarry Smith   } else SETERRQ(((PetscObject)matin)->comm,PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2531b1a666ecSBarry Smith 
2532b1a666ecSBarry Smith   if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);}
2533b1a666ecSBarry Smith   PetscFunctionReturn(0);
2534b1a666ecSBarry Smith }
2535b1a666ecSBarry Smith 
2536f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*);
2537f6d58c54SBarry Smith 
25388c7482ecSBarry Smith 
253979bdfe76SSatish Balay /* -------------------------------------------------------------------*/
2540cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
2541cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
2542cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
2543cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
2544cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
254597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
25467c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
25477c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
2548cc2dc46cSBarry Smith        0,
2549cc2dc46cSBarry Smith        0,
2550cc2dc46cSBarry Smith        0,
255197304618SKris Buschelman /*10*/ 0,
2552cc2dc46cSBarry Smith        0,
2553cc2dc46cSBarry Smith        0,
2554b1a666ecSBarry Smith        MatSOR_MPIBAIJ,
2555cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
255697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
25577fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
2558cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
2559cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
2560cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
256197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
2562cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2563cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2564cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
2565d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ,
2566cc2dc46cSBarry Smith        0,
2567cc2dc46cSBarry Smith        0,
2568cc2dc46cSBarry Smith        0,
2569cc2dc46cSBarry Smith        0,
2570d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ,
2571273d9f13SBarry Smith        0,
2572cc2dc46cSBarry Smith        0,
2573cc2dc46cSBarry Smith        0,
2574cc2dc46cSBarry Smith        0,
2575d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ,
2576cc2dc46cSBarry Smith        0,
2577cc2dc46cSBarry Smith        0,
2578cc2dc46cSBarry Smith        0,
2579cc2dc46cSBarry Smith        0,
2580d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ,
2581cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2582cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2583cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
25843c896bc6SHong Zhang        MatCopy_MPIBAIJ,
2585d519adbfSMatthew Knepley /*44*/ 0,
2586cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2587cc2dc46cSBarry Smith        0,
2588cc2dc46cSBarry Smith        0,
2589cc2dc46cSBarry Smith        0,
259041c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ,
2591cc2dc46cSBarry Smith        0,
2592cc2dc46cSBarry Smith        0,
2593cc2dc46cSBarry Smith        0,
2594cc2dc46cSBarry Smith        0,
2595f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ,
2596cc2dc46cSBarry Smith        0,
2597cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
259882094794SBarry Smith        MatPermute_MPIBAIJ,
2599cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
2600d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ,
2601f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2602f14a1c24SBarry Smith        MatView_MPIBAIJ,
2603357abbc8SBarry Smith        0,
26047843d17aSBarry Smith        0,
2605d519adbfSMatthew Knepley /*64*/ 0,
26067843d17aSBarry Smith        0,
26077843d17aSBarry Smith        0,
26087843d17aSBarry Smith        0,
26097843d17aSBarry Smith        0,
2610d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ,
26117843d17aSBarry Smith        0,
261297304618SKris Buschelman        0,
261397304618SKris Buschelman        0,
261497304618SKris Buschelman        0,
2615d519adbfSMatthew Knepley /*74*/ 0,
2616f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
261797304618SKris Buschelman        0,
261897304618SKris Buschelman        0,
261997304618SKris Buschelman        0,
2620d519adbfSMatthew Knepley /*79*/ 0,
262197304618SKris Buschelman        0,
262297304618SKris Buschelman        0,
262397304618SKris Buschelman        0,
26245bba2384SShri Abhyankar        MatLoad_MPIBAIJ,
2625d519adbfSMatthew Knepley /*84*/ 0,
2626865e5f61SKris Buschelman        0,
2627865e5f61SKris Buschelman        0,
2628865e5f61SKris Buschelman        0,
2629865e5f61SKris Buschelman        0,
2630d519adbfSMatthew Knepley /*89*/ 0,
2631865e5f61SKris Buschelman        0,
2632865e5f61SKris Buschelman        0,
2633865e5f61SKris Buschelman        0,
2634865e5f61SKris Buschelman        0,
2635d519adbfSMatthew Knepley /*94*/ 0,
2636865e5f61SKris Buschelman        0,
2637865e5f61SKris Buschelman        0,
263899cafbc1SBarry Smith        0,
263999cafbc1SBarry Smith        0,
2640d519adbfSMatthew Knepley /*99*/ 0,
264199cafbc1SBarry Smith        0,
264299cafbc1SBarry Smith        0,
264399cafbc1SBarry Smith        0,
264499cafbc1SBarry Smith        0,
2645d519adbfSMatthew Knepley /*104*/0,
264699cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
26478c7482ecSBarry Smith        MatImaginaryPart_MPIBAIJ,
26488c7482ecSBarry Smith        0,
26498c7482ecSBarry Smith        0,
2650d519adbfSMatthew Knepley /*109*/0,
26518c7482ecSBarry Smith        0,
26528c7482ecSBarry Smith        0,
26538c7482ecSBarry Smith        0,
26548c7482ecSBarry Smith        0,
2655f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ,
26568c7482ecSBarry Smith        0,
26574683f7a4SShri Abhyankar        MatGetGhosts_MPIBAIJ,
26584683f7a4SShri Abhyankar        0,
26594683f7a4SShri Abhyankar        0,
26604683f7a4SShri Abhyankar /*119*/0,
26614683f7a4SShri Abhyankar        0,
26624683f7a4SShri Abhyankar        0,
26635bba2384SShri Abhyankar        0
26648c7482ecSBarry Smith };
266579bdfe76SSatish Balay 
2666e18c124aSSatish Balay EXTERN_C_BEGIN
26674a2ae208SSatish Balay #undef __FUNCT__
26684a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2669be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
26705ef9f2a5SBarry Smith {
26715ef9f2a5SBarry Smith   PetscFunctionBegin;
26725ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
26735ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
26745ef9f2a5SBarry Smith   PetscFunctionReturn(0);
26755ef9f2a5SBarry Smith }
2676e18c124aSSatish Balay EXTERN_C_END
267779bdfe76SSatish Balay 
2678273d9f13SBarry Smith EXTERN_C_BEGIN
2679f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2680d94109b8SHong Zhang EXTERN_C_END
2681d94109b8SHong Zhang 
2682b8d659d7SLisandro Dalcin EXTERN_C_BEGIN
2683aac34f13SBarry Smith #undef __FUNCT__
2684aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2685cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2686aac34f13SBarry Smith {
2687b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2688b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2689b8d659d7SLisandro Dalcin   const PetscInt *JJ=0;
2690b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2691aac34f13SBarry Smith   PetscErrorCode ierr;
2692aac34f13SBarry Smith 
2693aac34f13SBarry Smith   PetscFunctionBegin;
2694b8d659d7SLisandro Dalcin 
269565e19b50SBarry Smith   if (bs < 1) SETERRQ1(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
269626283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
269726283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
269826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
269926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2700d0f46423SBarry Smith   m      = B->rmap->n/bs;
2701d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2702d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2703d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2704b8d659d7SLisandro Dalcin 
2705e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2706fca92195SBarry Smith   ierr  = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr);
2707aac34f13SBarry Smith   for (i=0; i<m; i++) {
2708cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2709e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2710b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2711cf12db73SBarry Smith     JJ  = jj + ii[i];
2712b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2713aac34f13SBarry Smith       if (*JJ >= cstart) break;
2714aac34f13SBarry Smith       JJ++;
2715aac34f13SBarry Smith     }
2716aac34f13SBarry Smith     d = 0;
2717b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2718aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2719aac34f13SBarry Smith       d++;
2720aac34f13SBarry Smith     }
2721aac34f13SBarry Smith     d_nnz[i] = d;
2722b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2723aac34f13SBarry Smith   }
2724aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2725fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2726aac34f13SBarry Smith 
2727b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2728b8d659d7SLisandro Dalcin   if (!values) {
2729fca92195SBarry Smith     ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2730b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2731b8d659d7SLisandro Dalcin   }
2732b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2733b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2734cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2735cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2736cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2737b8d659d7SLisandro Dalcin     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2738aac34f13SBarry Smith   }
2739aac34f13SBarry Smith 
2740b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2741aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2742aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2743aac34f13SBarry Smith 
2744aac34f13SBarry Smith   PetscFunctionReturn(0);
2745aac34f13SBarry Smith }
2746b8d659d7SLisandro Dalcin EXTERN_C_END
2747aac34f13SBarry Smith 
2748aac34f13SBarry Smith #undef __FUNCT__
2749aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2750aac34f13SBarry Smith /*@C
2751aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2752aac34f13SBarry Smith    (the default parallel PETSc format).
2753aac34f13SBarry Smith 
2754aac34f13SBarry Smith    Collective on MPI_Comm
2755aac34f13SBarry Smith 
2756aac34f13SBarry Smith    Input Parameters:
2757aac34f13SBarry Smith +  A - the matrix
2758aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2759aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2760aac34f13SBarry Smith -  v - optional values in the matrix
2761aac34f13SBarry Smith 
2762aac34f13SBarry Smith    Level: developer
2763aac34f13SBarry Smith 
2764aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2765aac34f13SBarry Smith 
2766aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2767aac34f13SBarry Smith @*/
2768be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2769aac34f13SBarry Smith {
2770aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2771aac34f13SBarry Smith 
2772aac34f13SBarry Smith   PetscFunctionBegin;
2773aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2774aac34f13SBarry Smith   if (f) {
2775aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2776aac34f13SBarry Smith   }
2777aac34f13SBarry Smith   PetscFunctionReturn(0);
2778aac34f13SBarry Smith }
2779aac34f13SBarry Smith 
2780d94109b8SHong Zhang EXTERN_C_BEGIN
27814a2ae208SSatish Balay #undef __FUNCT__
2782a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2783be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2784a23d5eceSKris Buschelman {
2785a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2786dfbe8321SBarry Smith   PetscErrorCode ierr;
2787db4efbfdSBarry Smith   PetscInt       i, newbs = PetscAbs(bs);
2788a23d5eceSKris Buschelman 
2789a23d5eceSKris Buschelman   PetscFunctionBegin;
2790db4efbfdSBarry Smith   if (bs < 0) {
27917adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2792db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
27938c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2794db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2795db4efbfdSBarry Smith   }
2796e7e72b3dSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
2797db4efbfdSBarry Smith   bs = newbs;
2798db4efbfdSBarry Smith 
2799a23d5eceSKris Buschelman 
2800e7e72b3dSBarry Smith   if (bs < 1) SETERRQ(((PetscObject)B)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2801a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2802a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
2803e32f2f54SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
2804e32f2f54SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2805899cda47SBarry Smith 
280626283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
280726283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
280826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
280926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2810899cda47SBarry Smith 
2811a23d5eceSKris Buschelman   if (d_nnz) {
2812d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2813e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2814a23d5eceSKris Buschelman     }
2815a23d5eceSKris Buschelman   }
2816a23d5eceSKris Buschelman   if (o_nnz) {
2817d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2818e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2819a23d5eceSKris Buschelman     }
2820a23d5eceSKris Buschelman   }
2821a23d5eceSKris Buschelman 
2822a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2823a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2824d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2825d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2826d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2827d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2828a23d5eceSKris Buschelman 
2829a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2830d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2831a23d5eceSKris Buschelman   }
2832d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2833d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2834d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2835d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2836a23d5eceSKris Buschelman 
2837526dfc15SBarry Smith   if (!B->preallocated) {
2838f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2839d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
28409c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
284152e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2842f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2843d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
28449c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
284552e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
28467adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2847526dfc15SBarry Smith   }
2848a23d5eceSKris Buschelman 
2849526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2850526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2851526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2852a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2853a23d5eceSKris Buschelman }
2854a23d5eceSKris Buschelman EXTERN_C_END
2855a23d5eceSKris Buschelman 
2856a23d5eceSKris Buschelman EXTERN_C_BEGIN
2857be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2858be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
285992b32695SKris Buschelman EXTERN_C_END
28605bf65638SKris Buschelman 
286182094794SBarry Smith 
286282094794SBarry Smith EXTERN_C_BEGIN
286382094794SBarry Smith #undef __FUNCT__
286482094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
286582094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj)
286682094794SBarry Smith {
286782094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
286882094794SBarry Smith   PetscErrorCode ierr;
286982094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
287082094794SBarry Smith   PetscInt       M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
287182094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
287282094794SBarry Smith 
287382094794SBarry Smith   PetscFunctionBegin;
287482094794SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr);
287582094794SBarry Smith   ii[0] = 0;
287682094794SBarry Smith   CHKMEMQ;
287782094794SBarry Smith   for (i=0; i<M; i++) {
2878e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2879e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
288082094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
288182094794SBarry Smith     /* remove one from count of matrix has diagonal */
288282094794SBarry Smith     for (j=id[i]; j<id[i+1]; j++) {
288382094794SBarry Smith       if (jd[j] == i) {ii[i+1]--;break;}
288482094794SBarry Smith     }
288582094794SBarry Smith   CHKMEMQ;
288682094794SBarry Smith   }
288782094794SBarry Smith   ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr);
288882094794SBarry Smith   cnt = 0;
288982094794SBarry Smith   for (i=0; i<M; i++) {
289082094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
289182094794SBarry Smith       if (garray[jo[j]] > rstart) break;
289282094794SBarry Smith       jj[cnt++] = garray[jo[j]];
289382094794SBarry Smith   CHKMEMQ;
289482094794SBarry Smith     }
289582094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
289682094794SBarry Smith       if (jd[k] != i) {
289782094794SBarry Smith         jj[cnt++] = rstart + jd[k];
289882094794SBarry Smith   CHKMEMQ;
289982094794SBarry Smith       }
290082094794SBarry Smith     }
290182094794SBarry Smith     for (;j<io[i+1]; j++) {
290282094794SBarry Smith       jj[cnt++] = garray[jo[j]];
290382094794SBarry Smith   CHKMEMQ;
290482094794SBarry Smith     }
290582094794SBarry Smith   }
290682094794SBarry Smith   ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr);
290782094794SBarry Smith   PetscFunctionReturn(0);
290882094794SBarry Smith }
2909dbf0e21dSBarry Smith EXTERN_C_END
291082094794SBarry Smith 
2911450b117fSShri Abhyankar EXTERN_C_BEGIN
2912450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
2913bccb9932SShri Abhyankar extern PetscErrorCode MatGetFactor_baij_mumps(Mat,MatFactorType,Mat*);
2914450b117fSShri Abhyankar #endif
2915450b117fSShri Abhyankar EXTERN_C_END
2916450b117fSShri Abhyankar 
29170bad9183SKris Buschelman /*MC
2918fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
29190bad9183SKris Buschelman 
29200bad9183SKris Buschelman    Options Database Keys:
29218c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
29228c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
29238c07d4e3SBarry Smith - -mat_use_hash_table <fact>
29240bad9183SKris Buschelman 
29250bad9183SKris Buschelman   Level: beginner
29260bad9183SKris Buschelman 
29270bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
29280bad9183SKris Buschelman M*/
29290bad9183SKris Buschelman 
293092b32695SKris Buschelman EXTERN_C_BEGIN
2931a23d5eceSKris Buschelman #undef __FUNCT__
29324a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2933be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2934273d9f13SBarry Smith {
2935273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2936dfbe8321SBarry Smith   PetscErrorCode ierr;
2937273d9f13SBarry Smith   PetscTruth     flg;
2938273d9f13SBarry Smith 
2939273d9f13SBarry Smith   PetscFunctionBegin;
294038f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
294182502324SSatish Balay   B->data = (void*)b;
294282502324SSatish Balay 
2943085a36d4SBarry Smith 
2944273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2945273d9f13SBarry Smith   B->mapping    = 0;
2946273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2947273d9f13SBarry Smith 
2948273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
29497adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
29507adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2951273d9f13SBarry Smith 
2952273d9f13SBarry Smith   /* build local table of row and column ownerships */
2953899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2954273d9f13SBarry Smith 
2955273d9f13SBarry Smith   /* build cache for off array entries formed */
29567adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2957273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2958273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2959273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2960273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2961273d9f13SBarry Smith 
2962273d9f13SBarry Smith   /* stuff used in block assembly */
2963273d9f13SBarry Smith   b->barray       = 0;
2964273d9f13SBarry Smith 
2965273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2966273d9f13SBarry Smith   b->lvec         = 0;
2967273d9f13SBarry Smith   b->Mvctx        = 0;
2968273d9f13SBarry Smith 
2969273d9f13SBarry Smith   /* stuff for MatGetRow() */
2970273d9f13SBarry Smith   b->rowindices   = 0;
2971273d9f13SBarry Smith   b->rowvalues    = 0;
2972273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2973273d9f13SBarry Smith 
2974273d9f13SBarry Smith   /* hash table stuff */
2975273d9f13SBarry Smith   b->ht           = 0;
2976273d9f13SBarry Smith   b->hd           = 0;
2977273d9f13SBarry Smith   b->ht_size      = 0;
2978273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2979273d9f13SBarry Smith   b->ht_fact      = 0;
2980273d9f13SBarry Smith   b->ht_total_ct  = 0;
2981273d9f13SBarry Smith   b->ht_insert_ct = 0;
2982273d9f13SBarry Smith 
29837adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
29848c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2985273d9f13SBarry Smith     if (flg) {
2986f6275e2eSBarry Smith       PetscReal fact = 1.39;
29874e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
29888c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
2989273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
2990273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
29911e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
2992273d9f13SBarry Smith     }
29938c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
29948c07d4e3SBarry Smith 
2995450b117fSShri Abhyankar #if defined(PETSC_HAVE_MUMPS)
2996bccb9932SShri Abhyankar   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetFactor_mumps_C", "MatGetFactor_baij_mumps",MatGetFactor_baij_mumps);CHKERRQ(ierr);
2997450b117fSShri Abhyankar #endif
299882094794SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",
299982094794SBarry Smith                                      "MatConvert_MPIBAIJ_MPIAdj",
300082094794SBarry Smith                                       MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
3001273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
3002273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
3003273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3004273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
3005273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
3006273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3007273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
3008273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
3009273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3010a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
3011a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
3012a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3013aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
301444ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
3015aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
301692b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
301792b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
301892b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
30195bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
30205bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
30215bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
302217667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
3023273d9f13SBarry Smith   PetscFunctionReturn(0);
3024273d9f13SBarry Smith }
3025273d9f13SBarry Smith EXTERN_C_END
3026273d9f13SBarry Smith 
3027209238afSKris Buschelman /*MC
3028002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3029209238afSKris Buschelman 
3030209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3031209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3032209238afSKris Buschelman 
3033209238afSKris Buschelman    Options Database Keys:
3034209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3035209238afSKris Buschelman 
3036209238afSKris Buschelman   Level: beginner
3037209238afSKris Buschelman 
3038aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3039209238afSKris Buschelman M*/
3040209238afSKris Buschelman 
3041209238afSKris Buschelman EXTERN_C_BEGIN
3042209238afSKris Buschelman #undef __FUNCT__
3043209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
3044be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
3045dfbe8321SBarry Smith {
30466849ba73SBarry Smith   PetscErrorCode ierr;
3047b24ad042SBarry Smith   PetscMPIInt    size;
3048209238afSKris Buschelman 
3049209238afSKris Buschelman   PetscFunctionBegin;
30507adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
3051209238afSKris Buschelman   if (size == 1) {
3052209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
3053209238afSKris Buschelman   } else {
3054209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
3055209238afSKris Buschelman   }
3056209238afSKris Buschelman   PetscFunctionReturn(0);
3057209238afSKris Buschelman }
3058209238afSKris Buschelman EXTERN_C_END
3059209238afSKris Buschelman 
30604a2ae208SSatish Balay #undef __FUNCT__
30614a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3062273d9f13SBarry Smith /*@C
3063aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3064273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3065273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3066273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3067273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3068273d9f13SBarry Smith 
3069273d9f13SBarry Smith    Collective on Mat
3070273d9f13SBarry Smith 
3071273d9f13SBarry Smith    Input Parameters:
3072273d9f13SBarry Smith +  A - the matrix
3073273d9f13SBarry Smith .  bs   - size of blockk
3074273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3075273d9f13SBarry Smith            submatrix  (same for all local rows)
3076273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3077273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
3078273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
3079273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3080273d9f13SBarry Smith            submatrix (same for all local rows).
3081273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3082273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
3083273d9f13SBarry Smith            each block row) or PETSC_NULL.
3084273d9f13SBarry Smith 
308549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3086273d9f13SBarry Smith 
3087273d9f13SBarry Smith    Options Database Keys:
30888c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
30898c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3090273d9f13SBarry Smith 
3091273d9f13SBarry Smith    Notes:
3092273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3093273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3094273d9f13SBarry Smith 
3095273d9f13SBarry Smith    Storage Information:
3096273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3097273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3098273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3099273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3100273d9f13SBarry Smith 
3101273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3102273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
3103273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
3104273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3105273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3106273d9f13SBarry Smith 
3107273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3108273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3109273d9f13SBarry Smith 
3110273d9f13SBarry Smith .vb
3111273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3112273d9f13SBarry Smith           -------------------
3113273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
3114273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
3115273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
3116273d9f13SBarry Smith           -------------------
3117273d9f13SBarry Smith .ve
3118273d9f13SBarry Smith 
3119273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3120273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3121273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3122273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3123273d9f13SBarry Smith 
3124273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3125273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3126273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3127273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3128273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3129273d9f13SBarry Smith    matrices.
3130273d9f13SBarry Smith 
3131aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3132aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3133aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3134aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3135aa95bbe8SBarry Smith 
3136273d9f13SBarry Smith    Level: intermediate
3137273d9f13SBarry Smith 
3138273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3139273d9f13SBarry Smith 
3140aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
3141273d9f13SBarry Smith @*/
3142be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3143273d9f13SBarry Smith {
3144b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
3145273d9f13SBarry Smith 
3146273d9f13SBarry Smith   PetscFunctionBegin;
3147a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3148a23d5eceSKris Buschelman   if (f) {
3149a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3150273d9f13SBarry Smith   }
3151273d9f13SBarry Smith   PetscFunctionReturn(0);
3152273d9f13SBarry Smith }
3153273d9f13SBarry Smith 
31544a2ae208SSatish Balay #undef __FUNCT__
31554a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
315679bdfe76SSatish Balay /*@C
315779bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
315879bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
315979bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
316079bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
316179bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
316279bdfe76SSatish Balay 
3163db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3164db81eaa0SLois Curfman McInnes 
316579bdfe76SSatish Balay    Input Parameters:
3166db81eaa0SLois Curfman McInnes +  comm - MPI communicator
316779bdfe76SSatish Balay .  bs   - size of blockk
316879bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
316992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
317092e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
317192e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
317292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
317392e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3174be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3175be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
317647a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
317779bdfe76SSatish Balay            submatrix  (same for all local rows)
317847a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
317992e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
3180db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
318147a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
318279bdfe76SSatish Balay            submatrix (same for all local rows).
318347a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
318492e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
318592e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
318679bdfe76SSatish Balay 
318779bdfe76SSatish Balay    Output Parameter:
318879bdfe76SSatish Balay .  A - the matrix
318979bdfe76SSatish Balay 
3190db81eaa0SLois Curfman McInnes    Options Database Keys:
31918c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31928c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
31933ffaccefSLois Curfman McInnes 
3194175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3195ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3196175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3197175b88e8SBarry Smith 
3198b259b22eSLois Curfman McInnes    Notes:
319949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
320049a6f317SBarry Smith 
320147a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
320247a75d0bSBarry Smith 
320379bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
320479bdfe76SSatish Balay    (possibly both).
320579bdfe76SSatish Balay 
3206be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3207be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3208be79a94dSBarry Smith 
320979bdfe76SSatish Balay    Storage Information:
321079bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
321179bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
321279bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
321379bdfe76SSatish Balay    local matrix (a rectangular submatrix).
321479bdfe76SSatish Balay 
321579bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
321679bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
321779bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
321879bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
321979bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
322079bdfe76SSatish Balay 
322179bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
322279bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
322379bdfe76SSatish Balay 
3224db81eaa0SLois Curfman McInnes .vb
3225db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3226db81eaa0SLois Curfman McInnes           -------------------
3227db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
3228db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
3229db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
3230db81eaa0SLois Curfman McInnes           -------------------
3231db81eaa0SLois Curfman McInnes .ve
323279bdfe76SSatish Balay 
323379bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
323479bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
323579bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
323657b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
323779bdfe76SSatish Balay 
3238d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3239d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
324079bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
324192e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
324292e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
32436da5968aSLois Curfman McInnes    matrices.
324479bdfe76SSatish Balay 
3245027ccd11SLois Curfman McInnes    Level: intermediate
3246027ccd11SLois Curfman McInnes 
324792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
324879bdfe76SSatish Balay 
3249aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
325079bdfe76SSatish Balay @*/
3251be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
325279bdfe76SSatish Balay {
32536849ba73SBarry Smith   PetscErrorCode ierr;
3254b24ad042SBarry Smith   PetscMPIInt    size;
325579bdfe76SSatish Balay 
3256d64ed03dSBarry Smith   PetscFunctionBegin;
3257f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3258f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3259d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3260273d9f13SBarry Smith   if (size > 1) {
3261273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3262273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3263273d9f13SBarry Smith   } else {
3264273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3265273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
32663914022bSBarry Smith   }
32673a40ed3dSBarry Smith   PetscFunctionReturn(0);
326879bdfe76SSatish Balay }
3269026e39d0SSatish Balay 
32704a2ae208SSatish Balay #undef __FUNCT__
32714a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
32726849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
32730ac07820SSatish Balay {
32740ac07820SSatish Balay   Mat            mat;
32750ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3276dfbe8321SBarry Smith   PetscErrorCode ierr;
3277b24ad042SBarry Smith   PetscInt       len=0;
32780ac07820SSatish Balay 
3279d64ed03dSBarry Smith   PetscFunctionBegin;
32800ac07820SSatish Balay   *newmat       = 0;
32817adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
3282d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
32837adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
32841d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
32857fff6886SHong Zhang 
3286d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3287273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32880ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
32897fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
32907fff6886SHong Zhang 
3291273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
3292d0f46423SBarry Smith   mat->rmap->bs  = matin->rmap->bs;
32930ac07820SSatish Balay   a->bs2   = oldmat->bs2;
32940ac07820SSatish Balay   a->mbs   = oldmat->mbs;
32950ac07820SSatish Balay   a->nbs   = oldmat->nbs;
32960ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
32970ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
32980ac07820SSatish Balay 
329926283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
330026283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3301899cda47SBarry Smith 
33020ac07820SSatish Balay   a->size         = oldmat->size;
33030ac07820SSatish Balay   a->rank         = oldmat->rank;
3304aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3305aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3306aef5e8e0SSatish Balay   a->rowindices   = 0;
33070ac07820SSatish Balay   a->rowvalues    = 0;
33080ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
330930793edcSSatish Balay   a->barray       = 0;
3310899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3311899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3312899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3313899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
33140ac07820SSatish Balay 
3315133cdb44SSatish Balay   /* hash table stuff */
3316133cdb44SSatish Balay   a->ht           = 0;
3317133cdb44SSatish Balay   a->hd           = 0;
3318133cdb44SSatish Balay   a->ht_size      = 0;
3319133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
332025fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3321133cdb44SSatish Balay   a->ht_total_ct  = 0;
3322133cdb44SSatish Balay   a->ht_insert_ct = 0;
3323133cdb44SSatish Balay 
3324899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
33250ac07820SSatish Balay   if (oldmat->colmap) {
3326aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
33270f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
332848e59246SSatish Balay #else
3329b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
333052e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3331b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
333248e59246SSatish Balay #endif
33330ac07820SSatish Balay   } else a->colmap = 0;
33344beb1cfeSHong Zhang 
33350ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3336b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
333752e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3338b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
33390ac07820SSatish Balay   } else a->garray = 0;
33400ac07820SSatish Balay 
3341533163c2SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
33420ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
334352e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
33440ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
334552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
33467fff6886SHong Zhang 
33472e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
334852e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
33492e8a6d31SBarry Smith   ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
335052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
33517adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
33520ac07820SSatish Balay   *newmat = mat;
33534beb1cfeSHong Zhang 
33543a40ed3dSBarry Smith   PetscFunctionReturn(0);
33550ac07820SSatish Balay }
335657b952d6SSatish Balay 
33574a2ae208SSatish Balay #undef __FUNCT__
33585bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ"
3359*112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer)
33604683f7a4SShri Abhyankar {
33614683f7a4SShri Abhyankar   PetscErrorCode ierr;
33624683f7a4SShri Abhyankar   int            fd;
33634683f7a4SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
33644683f7a4SShri Abhyankar   PetscScalar    *vals,*buf;
33654683f7a4SShri Abhyankar   MPI_Comm       comm = ((PetscObject)viewer)->comm;
33664683f7a4SShri Abhyankar   MPI_Status     status;
33674683f7a4SShri Abhyankar   PetscMPIInt    rank,size,maxnz;
33684683f7a4SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
33694683f7a4SShri Abhyankar   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
33704683f7a4SShri Abhyankar   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
33714683f7a4SShri Abhyankar   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
33724683f7a4SShri Abhyankar   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
33734683f7a4SShri Abhyankar   PetscInt       dcount,kmax,k,nzcount,tmp,mend,sizesset=1,grows,gcols;
33744683f7a4SShri Abhyankar 
33754683f7a4SShri Abhyankar   PetscFunctionBegin;
33764683f7a4SShri Abhyankar   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
33774683f7a4SShri Abhyankar     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
33784683f7a4SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
33794683f7a4SShri Abhyankar 
33804683f7a4SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
33814683f7a4SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
33824683f7a4SShri Abhyankar   if (!rank) {
33834683f7a4SShri Abhyankar     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
33844683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
33854683f7a4SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
33864683f7a4SShri Abhyankar   }
33874683f7a4SShri Abhyankar 
33884683f7a4SShri Abhyankar   if (newmat->rmap->n < 0 && newmat->rmap->N < 0 && newmat->cmap->n < 0 && newmat->cmap->N < 0) sizesset = 0;
33894683f7a4SShri Abhyankar 
33904683f7a4SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
33914683f7a4SShri Abhyankar   M = header[1]; N = header[2];
33924683f7a4SShri Abhyankar 
33934683f7a4SShri Abhyankar   /* If global rows/cols are set to PETSC_DECIDE, set it to the sizes given in the file */
33944683f7a4SShri Abhyankar   if (sizesset && newmat->rmap->N < 0) newmat->rmap->N = M;
33954683f7a4SShri Abhyankar   if (sizesset && newmat->cmap->N < 0) newmat->cmap->N = N;
33964683f7a4SShri Abhyankar 
33974683f7a4SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
33984683f7a4SShri Abhyankar   if (sizesset) {
33994683f7a4SShri Abhyankar     ierr = MatGetSize(newmat,&grows,&gcols);CHKERRQ(ierr);
34004683f7a4SShri Abhyankar   }
3401abd38a8fSBarry Smith   if (sizesset && newmat->rmap->N != grows) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of rows:Matrix in file has (%d) and input matrix has (%d)",M,grows);
3402abd38a8fSBarry Smith   if (sizesset && newmat->cmap->N != gcols) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Inconsistent # of cols:Matrix in file has (%d) and input matrix has (%d)",N,gcols);
34034683f7a4SShri Abhyankar 
34044683f7a4SShri Abhyankar   if (M != N) SETERRQ(((PetscObject)viewer)->comm,PETSC_ERR_SUP,"Can only do square matrices");
34054683f7a4SShri Abhyankar 
34064683f7a4SShri Abhyankar   /*
34074683f7a4SShri Abhyankar      This code adds extra rows to make sure the number of rows is
34084683f7a4SShri Abhyankar      divisible by the blocksize
34094683f7a4SShri Abhyankar   */
34104683f7a4SShri Abhyankar   Mbs        = M/bs;
34114683f7a4SShri Abhyankar   extra_rows = bs - M + bs*Mbs;
34124683f7a4SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
34134683f7a4SShri Abhyankar   else                  Mbs++;
34144683f7a4SShri Abhyankar   if (extra_rows && !rank) {
34154683f7a4SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
34164683f7a4SShri Abhyankar   }
34174683f7a4SShri Abhyankar 
34184683f7a4SShri Abhyankar   /* determine ownership of all rows */
34194683f7a4SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
34204683f7a4SShri Abhyankar     mbs        = Mbs/size + ((Mbs % size) > rank);
34214683f7a4SShri Abhyankar     m          = mbs*bs;
34224683f7a4SShri Abhyankar   } else { /* User set */
34234683f7a4SShri Abhyankar     m          = newmat->rmap->n;
34244683f7a4SShri Abhyankar     mbs        = m/bs;
34254683f7a4SShri Abhyankar   }
34264683f7a4SShri Abhyankar   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
34274683f7a4SShri Abhyankar   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
34284683f7a4SShri Abhyankar 
34294683f7a4SShri Abhyankar   /* process 0 needs enough room for process with most rows */
34304683f7a4SShri Abhyankar   if (!rank) {
34314683f7a4SShri Abhyankar     mmax = rowners[1];
34324683f7a4SShri Abhyankar     for (i=2; i<size; i++) {
34334683f7a4SShri Abhyankar       mmax = PetscMax(mmax,rowners[i]);
34344683f7a4SShri Abhyankar     }
34354683f7a4SShri Abhyankar     mmax*=bs;
34364683f7a4SShri Abhyankar   } else mmax = m;
34374683f7a4SShri Abhyankar 
34384683f7a4SShri Abhyankar   rowners[0] = 0;
34394683f7a4SShri Abhyankar   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
34404683f7a4SShri Abhyankar   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
34414683f7a4SShri Abhyankar   rstart = rowners[rank];
34424683f7a4SShri Abhyankar   rend   = rowners[rank+1];
34434683f7a4SShri Abhyankar 
34444683f7a4SShri Abhyankar   /* distribute row lengths to all processors */
34454683f7a4SShri Abhyankar   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
34464683f7a4SShri Abhyankar   if (!rank) {
34474683f7a4SShri Abhyankar     mend = m;
34484683f7a4SShri Abhyankar     if (size == 1) mend = mend - extra_rows;
34494683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
34504683f7a4SShri Abhyankar     for (j=mend; j<m; j++) locrowlens[j] = 1;
34514683f7a4SShri Abhyankar     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
34524683f7a4SShri Abhyankar     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
34534683f7a4SShri Abhyankar     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
34544683f7a4SShri Abhyankar     for (j=0; j<m; j++) {
34554683f7a4SShri Abhyankar       procsnz[0] += locrowlens[j];
34564683f7a4SShri Abhyankar     }
34574683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
34584683f7a4SShri Abhyankar       mend = browners[i+1] - browners[i];
34594683f7a4SShri Abhyankar       if (i == size-1) mend = mend - extra_rows;
34604683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
34614683f7a4SShri Abhyankar       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
34624683f7a4SShri Abhyankar       /* calculate the number of nonzeros on each processor */
34634683f7a4SShri Abhyankar       for (j=0; j<browners[i+1]-browners[i]; j++) {
34644683f7a4SShri Abhyankar         procsnz[i] += rowlengths[j];
34654683f7a4SShri Abhyankar       }
34664683f7a4SShri Abhyankar       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
34674683f7a4SShri Abhyankar     }
34684683f7a4SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
34694683f7a4SShri Abhyankar   } else {
34704683f7a4SShri Abhyankar     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
34714683f7a4SShri Abhyankar   }
34724683f7a4SShri Abhyankar 
34734683f7a4SShri Abhyankar   if (!rank) {
34744683f7a4SShri Abhyankar     /* determine max buffer needed and allocate it */
34754683f7a4SShri Abhyankar     maxnz = procsnz[0];
34764683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
34774683f7a4SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
34784683f7a4SShri Abhyankar     }
34794683f7a4SShri Abhyankar     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
34804683f7a4SShri Abhyankar 
34814683f7a4SShri Abhyankar     /* read in my part of the matrix column indices  */
34824683f7a4SShri Abhyankar     nz     = procsnz[0];
34834683f7a4SShri Abhyankar     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
34844683f7a4SShri Abhyankar     mycols = ibuf;
34854683f7a4SShri Abhyankar     if (size == 1)  nz -= extra_rows;
34864683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
34874683f7a4SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
34884683f7a4SShri Abhyankar 
34894683f7a4SShri Abhyankar     /* read in every ones (except the last) and ship off */
34904683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
34914683f7a4SShri Abhyankar       nz   = procsnz[i];
34924683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
34934683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
34944683f7a4SShri Abhyankar     }
34954683f7a4SShri Abhyankar     /* read in the stuff for the last proc */
34964683f7a4SShri Abhyankar     if (size != 1) {
34974683f7a4SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
34984683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
34994683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
35004683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
35014683f7a4SShri Abhyankar     }
35024683f7a4SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
35034683f7a4SShri Abhyankar   } else {
35044683f7a4SShri Abhyankar     /* determine buffer space needed for message */
35054683f7a4SShri Abhyankar     nz = 0;
35064683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
35074683f7a4SShri Abhyankar       nz += locrowlens[i];
35084683f7a4SShri Abhyankar     }
35094683f7a4SShri Abhyankar     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
35104683f7a4SShri Abhyankar     mycols = ibuf;
35114683f7a4SShri Abhyankar     /* receive message of column indices*/
35124683f7a4SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
35134683f7a4SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
35144683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
35154683f7a4SShri Abhyankar   }
35164683f7a4SShri Abhyankar 
35174683f7a4SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
35184683f7a4SShri Abhyankar   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
35194683f7a4SShri Abhyankar   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
35204683f7a4SShri Abhyankar   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
35214683f7a4SShri Abhyankar   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
35224683f7a4SShri Abhyankar   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
35234683f7a4SShri Abhyankar   rowcount = 0; nzcount = 0;
35244683f7a4SShri Abhyankar   for (i=0; i<mbs; i++) {
35254683f7a4SShri Abhyankar     dcount  = 0;
35264683f7a4SShri Abhyankar     odcount = 0;
35274683f7a4SShri Abhyankar     for (j=0; j<bs; j++) {
35284683f7a4SShri Abhyankar       kmax = locrowlens[rowcount];
35294683f7a4SShri Abhyankar       for (k=0; k<kmax; k++) {
35304683f7a4SShri Abhyankar         tmp = mycols[nzcount++]/bs;
35314683f7a4SShri Abhyankar         if (!mask[tmp]) {
35324683f7a4SShri Abhyankar           mask[tmp] = 1;
35334683f7a4SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
35344683f7a4SShri Abhyankar           else masked1[dcount++] = tmp;
35354683f7a4SShri Abhyankar         }
35364683f7a4SShri Abhyankar       }
35374683f7a4SShri Abhyankar       rowcount++;
35384683f7a4SShri Abhyankar     }
35394683f7a4SShri Abhyankar 
35404683f7a4SShri Abhyankar     dlens[i]  = dcount;
35414683f7a4SShri Abhyankar     odlens[i] = odcount;
35424683f7a4SShri Abhyankar 
35434683f7a4SShri Abhyankar     /* zero out the mask elements we set */
35444683f7a4SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
35454683f7a4SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
35464683f7a4SShri Abhyankar   }
35474683f7a4SShri Abhyankar 
35484683f7a4SShri Abhyankar 
35494683f7a4SShri Abhyankar   if (!sizesset) {
35504683f7a4SShri Abhyankar     ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
35514683f7a4SShri Abhyankar   }
35524683f7a4SShri Abhyankar   ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
35534683f7a4SShri Abhyankar 
35544683f7a4SShri Abhyankar   if (!rank) {
35554683f7a4SShri Abhyankar     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
35564683f7a4SShri Abhyankar     /* read in my part of the matrix numerical values  */
35574683f7a4SShri Abhyankar     nz = procsnz[0];
35584683f7a4SShri Abhyankar     vals = buf;
35594683f7a4SShri Abhyankar     mycols = ibuf;
35604683f7a4SShri Abhyankar     if (size == 1)  nz -= extra_rows;
35614683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
35624683f7a4SShri Abhyankar     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
35634683f7a4SShri Abhyankar 
35644683f7a4SShri Abhyankar     /* insert into matrix */
35654683f7a4SShri Abhyankar     jj      = rstart*bs;
35664683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
35674683f7a4SShri Abhyankar       ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
35684683f7a4SShri Abhyankar       mycols += locrowlens[i];
35694683f7a4SShri Abhyankar       vals   += locrowlens[i];
35704683f7a4SShri Abhyankar       jj++;
35714683f7a4SShri Abhyankar     }
35724683f7a4SShri Abhyankar     /* read in other processors (except the last one) and ship out */
35734683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
35744683f7a4SShri Abhyankar       nz   = procsnz[i];
35754683f7a4SShri Abhyankar       vals = buf;
35764683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
35774683f7a4SShri Abhyankar       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
35784683f7a4SShri Abhyankar     }
35794683f7a4SShri Abhyankar     /* the last proc */
35804683f7a4SShri Abhyankar     if (size != 1){
35814683f7a4SShri Abhyankar       nz   = procsnz[i] - extra_rows;
35824683f7a4SShri Abhyankar       vals = buf;
35834683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
35844683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
35854683f7a4SShri Abhyankar       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
35864683f7a4SShri Abhyankar     }
35874683f7a4SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
35884683f7a4SShri Abhyankar   } else {
35894683f7a4SShri Abhyankar     /* receive numeric values */
35904683f7a4SShri Abhyankar     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
35914683f7a4SShri Abhyankar 
35924683f7a4SShri Abhyankar     /* receive message of values*/
35934683f7a4SShri Abhyankar     vals   = buf;
35944683f7a4SShri Abhyankar     mycols = ibuf;
35954683f7a4SShri Abhyankar     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm,&status);CHKERRQ(ierr);
35964683f7a4SShri Abhyankar     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
35974683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
35984683f7a4SShri Abhyankar 
35994683f7a4SShri Abhyankar     /* insert into matrix */
36004683f7a4SShri Abhyankar     jj      = rstart*bs;
36014683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
36024683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
36034683f7a4SShri Abhyankar       mycols += locrowlens[i];
36044683f7a4SShri Abhyankar       vals   += locrowlens[i];
36054683f7a4SShri Abhyankar       jj++;
36064683f7a4SShri Abhyankar     }
36074683f7a4SShri Abhyankar   }
36084683f7a4SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
36094683f7a4SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
36104683f7a4SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
36114683f7a4SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
36124683f7a4SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
36134683f7a4SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
36144683f7a4SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36154683f7a4SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36164683f7a4SShri Abhyankar 
36174683f7a4SShri Abhyankar   PetscFunctionReturn(0);
36184683f7a4SShri Abhyankar }
36194683f7a4SShri Abhyankar 
36204683f7a4SShri Abhyankar #undef __FUNCT__
36214a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3622133cdb44SSatish Balay /*@
3623133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3624133cdb44SSatish Balay 
3625133cdb44SSatish Balay    Input Parameters:
3626133cdb44SSatish Balay .  mat  - the matrix
3627133cdb44SSatish Balay .  fact - factor
3628133cdb44SSatish Balay 
3629c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3630fee21e36SBarry Smith 
36318c890885SBarry Smith    Level: advanced
36328c890885SBarry Smith 
3633133cdb44SSatish Balay   Notes:
36348c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3635133cdb44SSatish Balay 
3636133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3637133cdb44SSatish Balay 
3638133cdb44SSatish Balay .seealso: MatSetOption()
3639133cdb44SSatish Balay @*/
3640be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3641133cdb44SSatish Balay {
3642dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
36435bf65638SKris Buschelman 
36445bf65638SKris Buschelman   PetscFunctionBegin;
36455bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
36465bf65638SKris Buschelman   if (f) {
36475bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
36485bf65638SKris Buschelman   }
36495bf65638SKris Buschelman   PetscFunctionReturn(0);
36505bf65638SKris Buschelman }
36515bf65638SKris Buschelman 
3652be1d678aSKris Buschelman EXTERN_C_BEGIN
36535bf65638SKris Buschelman #undef __FUNCT__
36545bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
3655be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
36565bf65638SKris Buschelman {
365725fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3658133cdb44SSatish Balay 
3659133cdb44SSatish Balay   PetscFunctionBegin;
3660133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
3661133cdb44SSatish Balay   baij->ht_fact = fact;
3662133cdb44SSatish Balay   PetscFunctionReturn(0);
3663133cdb44SSatish Balay }
3664be1d678aSKris Buschelman EXTERN_C_END
3665f2a5309cSSatish Balay 
36664a2ae208SSatish Balay #undef __FUNCT__
36674a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
3668be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
3669f2a5309cSSatish Balay {
3670f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3671f2a5309cSSatish Balay   PetscFunctionBegin;
3672f2a5309cSSatish Balay   *Ad     = a->A;
3673f2a5309cSSatish Balay   *Ao     = a->B;
3674195d93cdSBarry Smith   *colmap = a->garray;
3675f2a5309cSSatish Balay   PetscFunctionReturn(0);
3676f2a5309cSSatish Balay }
367785535b8eSBarry Smith 
367885535b8eSBarry Smith /*
367985535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
368085535b8eSBarry Smith */
368185535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
368285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
368385535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
368485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
368585535b8eSBarry Smith #endif
368685535b8eSBarry Smith 
368785535b8eSBarry Smith #undef __FUNCT__
368885535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
368985535b8eSBarry Smith /*@C
369085535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
369185535b8eSBarry Smith 
369285535b8eSBarry Smith   Collective on Mat
369385535b8eSBarry Smith 
369485535b8eSBarry Smith   Input Parameters:
369585535b8eSBarry Smith + mat - the matrix
369685535b8eSBarry Smith . min - number of input rows
369785535b8eSBarry Smith . im - input rows
369885535b8eSBarry Smith . nin - number of input columns
369985535b8eSBarry Smith . in - input columns
370085535b8eSBarry Smith . v - numerical values input
370185535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
370285535b8eSBarry Smith 
370385535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
370485535b8eSBarry Smith 
370585535b8eSBarry Smith   Level: advanced
370685535b8eSBarry Smith 
370785535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
370885535b8eSBarry Smith @*/
370985535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
371085535b8eSBarry Smith {
371185535b8eSBarry Smith   /* convert input arguments to C version */
371285535b8eSBarry Smith   Mat             mat = *matin;
371385535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
371485535b8eSBarry Smith   InsertMode      addv = *addvin;
371585535b8eSBarry Smith 
371685535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
371785535b8eSBarry Smith   const MatScalar *value;
371885535b8eSBarry Smith   MatScalar       *barray=baij->barray;
371985535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
372085535b8eSBarry Smith   PetscErrorCode  ierr;
372185535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
372285535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3723d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
372485535b8eSBarry Smith 
372585535b8eSBarry Smith   PetscFunctionBegin;
372685535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
372785535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
372885535b8eSBarry Smith     mat->insertmode = addv;
372985535b8eSBarry Smith   }
373085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3731e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3732e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
373385535b8eSBarry Smith #endif
373485535b8eSBarry Smith   if (mat->assembled) {
373585535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
373685535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
373785535b8eSBarry Smith   }
373885535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
373985535b8eSBarry Smith 
374085535b8eSBarry Smith 
374185535b8eSBarry Smith   if(!barray) {
374285535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
374385535b8eSBarry Smith     baij->barray = barray;
374485535b8eSBarry Smith   }
374585535b8eSBarry Smith 
374685535b8eSBarry Smith   if (roworiented) {
374785535b8eSBarry Smith     stepval = (n-1)*bs;
374885535b8eSBarry Smith   } else {
374985535b8eSBarry Smith     stepval = (m-1)*bs;
375085535b8eSBarry Smith   }
375185535b8eSBarry Smith   for (i=0; i<m; i++) {
375285535b8eSBarry Smith     if (im[i] < 0) continue;
375385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3754e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
375585535b8eSBarry Smith #endif
375685535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
375785535b8eSBarry Smith       row = im[i] - rstart;
375885535b8eSBarry Smith       for (j=0; j<n; j++) {
375985535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
376085535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
376185535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
376285535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
376385535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
376485535b8eSBarry Smith         } else { /* Here a copy is required */
376585535b8eSBarry Smith           if (roworiented) {
376685535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
376785535b8eSBarry Smith           } else {
376885535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
376985535b8eSBarry Smith           }
377085535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
377185535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
377285535b8eSBarry Smith               *barray++  = *value++;
377385535b8eSBarry Smith             }
377485535b8eSBarry Smith           }
377585535b8eSBarry Smith           barray -=bs2;
377685535b8eSBarry Smith         }
377785535b8eSBarry Smith 
377885535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
377985535b8eSBarry Smith           col  = in[j] - cstart;
378097e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
378185535b8eSBarry Smith         }
378285535b8eSBarry Smith         else if (in[j] < 0) continue;
378385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3784cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
378585535b8eSBarry Smith #endif
378685535b8eSBarry Smith         else {
378785535b8eSBarry Smith           if (mat->was_assembled) {
378885535b8eSBarry Smith             if (!baij->colmap) {
378985535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
379085535b8eSBarry Smith             }
379185535b8eSBarry Smith 
379285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
379385535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
379485535b8eSBarry Smith             { PetscInt data;
379585535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3796e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
379785535b8eSBarry Smith             }
379885535b8eSBarry Smith #else
3799e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
380085535b8eSBarry Smith #endif
380185535b8eSBarry Smith #endif
380285535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
380385535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
380485535b8eSBarry Smith             col  = (col - 1)/bs;
380585535b8eSBarry Smith #else
380685535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
380785535b8eSBarry Smith #endif
380885535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
380985535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
381085535b8eSBarry Smith               col =  in[j];
381185535b8eSBarry Smith             }
381285535b8eSBarry Smith           }
381385535b8eSBarry Smith           else col = in[j];
381497e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
381585535b8eSBarry Smith         }
381685535b8eSBarry Smith       }
381785535b8eSBarry Smith     } else {
381885535b8eSBarry Smith       if (!baij->donotstash) {
381985535b8eSBarry Smith         if (roworiented) {
382085535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
382185535b8eSBarry Smith         } else {
382285535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
382385535b8eSBarry Smith         }
382485535b8eSBarry Smith       }
382585535b8eSBarry Smith     }
382685535b8eSBarry Smith   }
382785535b8eSBarry Smith 
382885535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
382985535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
383085535b8eSBarry Smith   PetscFunctionReturn(0);
383185535b8eSBarry Smith }
3832