1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 4f3da1532SBarry Smith #include "petscblaslapack.h" 579bdfe76SSatish Balay 6dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 7dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 15f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1693fea6afSBarry Smith 174a2ae208SSatish Balay #undef __FUNCT__ 18985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 19985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 207843d17aSBarry Smith { 217843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 22dfbe8321SBarry Smith PetscErrorCode ierr; 23985db425SBarry Smith PetscInt i,*idxb = 0; 2487828ca2SBarry Smith PetscScalar *va,*vb; 257843d17aSBarry Smith Vec vtmp; 267843d17aSBarry Smith 277843d17aSBarry Smith PetscFunctionBegin; 28985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 291ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 30985db425SBarry Smith if (idx) { 31192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 32985db425SBarry Smith } 337843d17aSBarry Smith 34d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 35d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 36985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 371ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 387843d17aSBarry Smith 39d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 40d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 417843d17aSBarry Smith } 427843d17aSBarry Smith 431ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 441ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 45985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 46ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 477843d17aSBarry Smith PetscFunctionReturn(0); 487843d17aSBarry Smith } 497843d17aSBarry Smith 507fc3c18eSBarry Smith EXTERN_C_BEGIN 514a2ae208SSatish Balay #undef __FUNCT__ 524a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 53be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 547fc3c18eSBarry Smith { 557fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 56dfbe8321SBarry Smith PetscErrorCode ierr; 577fc3c18eSBarry Smith 587fc3c18eSBarry Smith PetscFunctionBegin; 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 607fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 617fc3c18eSBarry Smith PetscFunctionReturn(0); 627fc3c18eSBarry Smith } 637fc3c18eSBarry Smith EXTERN_C_END 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith EXTERN_C_BEGIN 664a2ae208SSatish Balay #undef __FUNCT__ 674a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 68be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 697fc3c18eSBarry Smith { 707fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 71dfbe8321SBarry Smith PetscErrorCode ierr; 727fc3c18eSBarry Smith 737fc3c18eSBarry Smith PetscFunctionBegin; 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 757fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 767fc3c18eSBarry Smith PetscFunctionReturn(0); 777fc3c18eSBarry Smith } 787fc3c18eSBarry Smith EXTERN_C_END 797fc3c18eSBarry Smith 80537820f0SBarry Smith /* 81537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8257b952d6SSatish Balay number to the local number in the off-diagonal part of the local 83e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 8457b952d6SSatish Balay length of colmap equals the global matrix length. 8557b952d6SSatish Balay */ 864a2ae208SSatish Balay #undef __FUNCT__ 874a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 88dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8957b952d6SSatish Balay { 9057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 926849ba73SBarry Smith PetscErrorCode ierr; 93d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9457b952d6SSatish Balay 95d64ed03dSBarry Smith PetscFunctionBegin; 96aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 97f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9848e59246SSatish Balay for (i=0; i<nbs; i++){ 990f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 10048e59246SSatish Balay } 10148e59246SSatish Balay #else 102b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 105928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10648e59246SSatish Balay #endif 1073a40ed3dSBarry Smith PetscFunctionReturn(0); 10857b952d6SSatish Balay } 10957b952d6SSatish Balay 11080c1aa95SSatish Balay #define CHUNKSIZE 10 11180c1aa95SSatish Balay 112f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11380c1aa95SSatish Balay { \ 11480c1aa95SSatish Balay \ 11580c1aa95SSatish Balay brow = row/bs; \ 11680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 117ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11880c1aa95SSatish Balay bcol = col/bs; \ 11980c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 120ab26458aSBarry Smith low = 0; high = nrow; \ 121ab26458aSBarry Smith while (high-low > 3) { \ 122ab26458aSBarry Smith t = (low+high)/2; \ 123ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 124ab26458aSBarry Smith else low = t; \ 125ab26458aSBarry Smith } \ 126ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12780c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12880c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12980c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 130eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 131eada6651SSatish Balay else *bap = value; \ 132ac7a638eSSatish Balay goto a_noinsert; \ 13380c1aa95SSatish Balay } \ 13480c1aa95SSatish Balay } \ 13589280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 136085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 137421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13880c1aa95SSatish Balay N = nrow++ - 1; \ 13980c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 14080c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14180c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1423eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14380c1aa95SSatish Balay } \ 1443eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14580c1aa95SSatish Balay rp[_i] = bcol; \ 14680c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 147ac7a638eSSatish Balay a_noinsert:; \ 14880c1aa95SSatish Balay ailen[brow] = nrow; \ 14980c1aa95SSatish Balay } 15057b952d6SSatish Balay 151ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 152ac7a638eSSatish Balay { \ 153ac7a638eSSatish Balay brow = row/bs; \ 154ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 155ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 156ac7a638eSSatish Balay bcol = col/bs; \ 157ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 158ac7a638eSSatish Balay low = 0; high = nrow; \ 159ac7a638eSSatish Balay while (high-low > 3) { \ 160ac7a638eSSatish Balay t = (low+high)/2; \ 161ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 162ac7a638eSSatish Balay else low = t; \ 163ac7a638eSSatish Balay } \ 164ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 165ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 166ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 167ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 168ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 169ac7a638eSSatish Balay else *bap = value; \ 170ac7a638eSSatish Balay goto b_noinsert; \ 171ac7a638eSSatish Balay } \ 172ac7a638eSSatish Balay } \ 17389280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 174085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 175421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 176085a36d4SBarry Smith CHKMEMQ;\ 177ac7a638eSSatish Balay N = nrow++ - 1; \ 178ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 179ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 180ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1813eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 182ac7a638eSSatish Balay } \ 1833eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 184ac7a638eSSatish Balay rp[_i] = bcol; \ 185ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 186ac7a638eSSatish Balay b_noinsert:; \ 187ac7a638eSSatish Balay bilen[brow] = nrow; \ 188ac7a638eSSatish Balay } 189ac7a638eSSatish Balay 1904a2ae208SSatish Balay #undef __FUNCT__ 1914a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 192b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19357b952d6SSatish Balay { 19457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19593fea6afSBarry Smith MatScalar value; 196273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 197dfbe8321SBarry Smith PetscErrorCode ierr; 198b24ad042SBarry Smith PetscInt i,j,row,col; 199d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 200d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 201d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20257b952d6SSatish Balay 203eada6651SSatish Balay /* Some Variables required in the macro */ 20480c1aa95SSatish Balay Mat A = baij->A; 20580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 206b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2073eda8832SBarry Smith MatScalar *aa=a->a; 208ac7a638eSSatish Balay 209ac7a638eSSatish Balay Mat B = baij->B; 210ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 211b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2123eda8832SBarry Smith MatScalar *ba=b->a; 213ac7a638eSSatish Balay 214b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 215b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2163eda8832SBarry Smith MatScalar *ap,*bap; 21780c1aa95SSatish Balay 218d64ed03dSBarry Smith PetscFunctionBegin; 21971fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 22057b952d6SSatish Balay for (i=0; i<m; i++) { 2215ef9f2a5SBarry Smith if (im[i] < 0) continue; 2222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 223d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 224639f9d9dSBarry Smith #endif 22557b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22657b952d6SSatish Balay row = im[i] - rstart_orig; 22757b952d6SSatish Balay for (j=0; j<n; j++) { 22857b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22957b952d6SSatish Balay col = in[j] - cstart_orig; 23057b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 231f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23280c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23373959e64SBarry Smith } else if (in[j] < 0) continue; 2342515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 235d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 236639f9d9dSBarry Smith #endif 23757b952d6SSatish Balay else { 23857b952d6SSatish Balay if (mat->was_assembled) { 239905e6a2fSBarry Smith if (!baij->colmap) { 240905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 241905e6a2fSBarry Smith } 242aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2430f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 244bba1ac68SSatish Balay col = col - 1; 24548e59246SSatish Balay #else 246bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24748e59246SSatish Balay #endif 24857b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24957b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2508295de27SSatish Balay col = in[j]; 2519bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2529bf004c3SSatish Balay B = baij->B; 2539bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2549bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2559bf004c3SSatish Balay ba=b->a; 256bba1ac68SSatish Balay } else col += in[j]%bs; 2578295de27SSatish Balay } else col = in[j]; 25857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25990da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 26090da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 26157b952d6SSatish Balay } 26257b952d6SSatish Balay } 263d64ed03dSBarry Smith } else { 26490f02eecSBarry Smith if (!baij->donotstash) { 265ff2fd236SBarry Smith if (roworiented) { 266b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 267ff2fd236SBarry Smith } else { 268b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26957b952d6SSatish Balay } 27057b952d6SSatish Balay } 27157b952d6SSatish Balay } 27290f02eecSBarry Smith } 2733a40ed3dSBarry Smith PetscFunctionReturn(0); 27457b952d6SSatish Balay } 27557b952d6SSatish Balay 2764a2ae208SSatish Balay #undef __FUNCT__ 27797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 279ab26458aSBarry Smith { 280ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 281dd6ea824SBarry Smith const PetscScalar *value; 282f15d580aSBarry Smith MatScalar *barray=baij->barray; 283273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 284dfbe8321SBarry Smith PetscErrorCode ierr; 285899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 286899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 287d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 288ab26458aSBarry Smith 289b16ae2b1SBarry Smith PetscFunctionBegin; 29030793edcSSatish Balay if(!barray) { 29182502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29282502324SSatish Balay baij->barray = barray; 29330793edcSSatish Balay } 29430793edcSSatish Balay 295ab26458aSBarry Smith if (roworiented) { 296ab26458aSBarry Smith stepval = (n-1)*bs; 297ab26458aSBarry Smith } else { 298ab26458aSBarry Smith stepval = (m-1)*bs; 299ab26458aSBarry Smith } 300ab26458aSBarry Smith for (i=0; i<m; i++) { 3015ef9f2a5SBarry Smith if (im[i] < 0) continue; 3022515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30377431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 304ab26458aSBarry Smith #endif 305ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 306ab26458aSBarry Smith row = im[i] - rstart; 307ab26458aSBarry Smith for (j=0; j<n; j++) { 30815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 31115b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 312f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31315b57d14SSatish Balay } else { /* Here a copy is required */ 314ab26458aSBarry Smith if (roworiented) { 315ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 316ab26458aSBarry Smith } else { 317ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 318abef11f7SSatish Balay } 31947513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 32047513183SBarry Smith for (jj=0; jj<bs; jj++) { 32130793edcSSatish Balay *barray++ = *value++; 32247513183SBarry Smith } 32347513183SBarry Smith } 32430793edcSSatish Balay barray -=bs2; 32515b57d14SSatish Balay } 326abef11f7SSatish Balay 327abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 328abef11f7SSatish Balay col = in[j] - cstart; 32997e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 330ab26458aSBarry Smith } 3315ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33377431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 334ab26458aSBarry Smith #endif 335ab26458aSBarry Smith else { 336ab26458aSBarry Smith if (mat->was_assembled) { 337ab26458aSBarry Smith if (!baij->colmap) { 338ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 339ab26458aSBarry Smith } 340a5eb4965SSatish Balay 3412515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 342aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 343b24ad042SBarry Smith { PetscInt data; 3440f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34529bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 346fa46199cSSatish Balay } 34748e59246SSatish Balay #else 34829bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 349a5eb4965SSatish Balay #endif 35048e59246SSatish Balay #endif 351aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3520f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 353fa46199cSSatish Balay col = (col - 1)/bs; 35448e59246SSatish Balay #else 355a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35648e59246SSatish Balay #endif 357ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 358ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 359ab26458aSBarry Smith col = in[j]; 360ab26458aSBarry Smith } 361ab26458aSBarry Smith } 362ab26458aSBarry Smith else col = in[j]; 36397e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 364ab26458aSBarry Smith } 365ab26458aSBarry Smith } 366d64ed03dSBarry Smith } else { 367ab26458aSBarry Smith if (!baij->donotstash) { 368ff2fd236SBarry Smith if (roworiented) { 3696fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } else { 3716fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 372ff2fd236SBarry Smith } 373abef11f7SSatish Balay } 374ab26458aSBarry Smith } 375ab26458aSBarry Smith } 3763a40ed3dSBarry Smith PetscFunctionReturn(0); 377ab26458aSBarry Smith } 3786fa18ffdSBarry Smith 3790bdbc534SSatish Balay #define HASH_KEY 0.6180339887 380b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 381b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 382b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3834a2ae208SSatish Balay #undef __FUNCT__ 38497e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38597e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3860bdbc534SSatish Balay { 3870bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 388273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 389dfbe8321SBarry Smith PetscErrorCode ierr; 390b24ad042SBarry Smith PetscInt i,j,row,col; 391d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 392d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 393d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 394329f5518SBarry Smith PetscReal tmp; 3953eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3962515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 397b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3984a15367fSSatish Balay #endif 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay PetscFunctionBegin; 40171fd2e92SBarry Smith if (v) PetscValidScalarPointer(v,6); 4020bdbc534SSatish Balay for (i=0; i<m; i++) { 4032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40429bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 405d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4060bdbc534SSatish Balay #endif 4070bdbc534SSatish Balay row = im[i]; 408c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4090bdbc534SSatish Balay for (j=0; j<n; j++) { 4100bdbc534SSatish Balay col = in[j]; 4116fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 412b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 413c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 414c2760754SSatish Balay h1 = HASH(size,key,tmp); 4150bdbc534SSatish Balay 416c2760754SSatish Balay 417c2760754SSatish Balay idx = h1; 4182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 419187ce0cbSSatish Balay insert_ct++; 420187ce0cbSSatish Balay total_ct++; 421187ce0cbSSatish Balay if (HT[idx] != key) { 422187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == size) { 424187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 425187ce0cbSSatish Balay if (idx == h1) { 42677431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay } 429187ce0cbSSatish Balay } 430187ce0cbSSatish Balay #else 431c2760754SSatish Balay if (HT[idx] != key) { 432c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == size) { 434c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 435c2760754SSatish Balay if (idx == h1) { 43677431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 437c2760754SSatish Balay } 438c2760754SSatish Balay } 439c2760754SSatish Balay } 440187ce0cbSSatish Balay #endif 441c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 442c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 443c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4440bdbc534SSatish Balay } 4450bdbc534SSatish Balay } else { 4460bdbc534SSatish Balay if (!baij->donotstash) { 447ff2fd236SBarry Smith if (roworiented) { 448b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 449ff2fd236SBarry Smith } else { 450b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4530bdbc534SSatish Balay } 4540bdbc534SSatish Balay } 4552515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 456187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 457187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 458187ce0cbSSatish Balay #endif 4590bdbc534SSatish Balay PetscFunctionReturn(0); 4600bdbc534SSatish Balay } 4610bdbc534SSatish Balay 4624a2ae208SSatish Balay #undef __FUNCT__ 46397e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46497e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4650bdbc534SSatish Balay { 4660bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 467273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 468dfbe8321SBarry Smith PetscErrorCode ierr; 469b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 470899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 471d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 472b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 473329f5518SBarry Smith PetscReal tmp; 4743eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 475dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4762515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 477b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4784a15367fSSatish Balay #endif 4790bdbc534SSatish Balay 480d0a41580SSatish Balay PetscFunctionBegin; 481d0a41580SSatish Balay 4820bdbc534SSatish Balay if (roworiented) { 4830bdbc534SSatish Balay stepval = (n-1)*bs; 4840bdbc534SSatish Balay } else { 4850bdbc534SSatish Balay stepval = (m-1)*bs; 4860bdbc534SSatish Balay } 4870bdbc534SSatish Balay for (i=0; i<m; i++) { 4882515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48977431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 49077431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4910bdbc534SSatish Balay #endif 4920bdbc534SSatish Balay row = im[i]; 493ab715e2cSSatish Balay v_t = v + i*nbs2; 494c2760754SSatish Balay if (row >= rstart && row < rend) { 4950bdbc534SSatish Balay for (j=0; j<n; j++) { 4960bdbc534SSatish Balay col = in[j]; 4970bdbc534SSatish Balay 4980bdbc534SSatish Balay /* Look up into the Hash Table */ 499c2760754SSatish Balay key = row*Nbs+col+1; 500c2760754SSatish Balay h1 = HASH(size,key,tmp); 5010bdbc534SSatish Balay 502c2760754SSatish Balay idx = h1; 5032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 504187ce0cbSSatish Balay total_ct++; 505187ce0cbSSatish Balay insert_ct++; 506187ce0cbSSatish Balay if (HT[idx] != key) { 507187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == size) { 509187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 510187ce0cbSSatish Balay if (idx == h1) { 51177431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay } 514187ce0cbSSatish Balay } 515187ce0cbSSatish Balay #else 516c2760754SSatish Balay if (HT[idx] != key) { 517c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == size) { 519c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 520c2760754SSatish Balay if (idx == h1) { 52177431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 522c2760754SSatish Balay } 523c2760754SSatish Balay } 524c2760754SSatish Balay } 525187ce0cbSSatish Balay #endif 526c2760754SSatish Balay baij_a = HD[idx]; 5270bdbc534SSatish Balay if (roworiented) { 528c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 529187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 530187ce0cbSSatish Balay value = v_t; 531187ce0cbSSatish Balay v_t += bs; 532fef45726SSatish Balay if (addv == ADD_VALUES) { 533c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 534c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 535fef45726SSatish Balay baij_a[jj] += *value++; 536b4cc0f5aSSatish Balay } 537b4cc0f5aSSatish Balay } 538fef45726SSatish Balay } else { 539c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 540c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 541fef45726SSatish Balay baij_a[jj] = *value++; 542fef45726SSatish Balay } 543fef45726SSatish Balay } 544fef45726SSatish Balay } 5450bdbc534SSatish Balay } else { 5460bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 547fef45726SSatish Balay if (addv == ADD_VALUES) { 548b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5490bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 550fef45726SSatish Balay baij_a[jj] += *value++; 551fef45726SSatish Balay } 552fef45726SSatish Balay } 553fef45726SSatish Balay } else { 554fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 555fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 556fef45726SSatish Balay baij_a[jj] = *value++; 557fef45726SSatish Balay } 558b4cc0f5aSSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } 5610bdbc534SSatish Balay } 5620bdbc534SSatish Balay } else { 5630bdbc534SSatish Balay if (!baij->donotstash) { 5640bdbc534SSatish Balay if (roworiented) { 5658798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } else { 5678798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5700bdbc534SSatish Balay } 5710bdbc534SSatish Balay } 5722515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 573187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 574187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 575187ce0cbSSatish Balay #endif 5760bdbc534SSatish Balay PetscFunctionReturn(0); 5770bdbc534SSatish Balay } 578133cdb44SSatish Balay 5794a2ae208SSatish Balay #undef __FUNCT__ 5804a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 581b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 582d6de1c52SSatish Balay { 583d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5846849ba73SBarry Smith PetscErrorCode ierr; 585d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 586d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 587d6de1c52SSatish Balay 588133cdb44SSatish Balay PetscFunctionBegin; 589d6de1c52SSatish Balay for (i=0; i<m; i++) { 59097e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 591d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 592d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 593d6de1c52SSatish Balay row = idxm[i] - bsrstart; 594d6de1c52SSatish Balay for (j=0; j<n; j++) { 59597e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 596d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 597d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 598d6de1c52SSatish Balay col = idxn[j] - bscstart; 59998dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 600d64ed03dSBarry Smith } else { 601905e6a2fSBarry Smith if (!baij->colmap) { 602905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 603905e6a2fSBarry Smith } 604aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6050f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 606fa46199cSSatish Balay data --; 60748e59246SSatish Balay #else 60848e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60948e59246SSatish Balay #endif 61048e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 611d9d09a02SSatish Balay else { 61248e59246SSatish Balay col = data + idxn[j]%bs; 61398dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 614d6de1c52SSatish Balay } 615d6de1c52SSatish Balay } 616d6de1c52SSatish Balay } 617d64ed03dSBarry Smith } else { 61829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 619d6de1c52SSatish Balay } 620d6de1c52SSatish Balay } 6213a40ed3dSBarry Smith PetscFunctionReturn(0); 622d6de1c52SSatish Balay } 623d6de1c52SSatish Balay 6244a2ae208SSatish Balay #undef __FUNCT__ 6254a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 626dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 627d6de1c52SSatish Balay { 628d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 629d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 630dfbe8321SBarry Smith PetscErrorCode ierr; 631d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 632329f5518SBarry Smith PetscReal sum = 0.0; 6333eda8832SBarry Smith MatScalar *v; 634d6de1c52SSatish Balay 635d64ed03dSBarry Smith PetscFunctionBegin; 636d6de1c52SSatish Balay if (baij->size == 1) { 637064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 638d6de1c52SSatish Balay } else { 639d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 640d6de1c52SSatish Balay v = amat->a; 6418a62d963SHong Zhang nz = amat->nz*bs2; 6428a62d963SHong Zhang for (i=0; i<nz; i++) { 643aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 644329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 645d6de1c52SSatish Balay #else 646d6de1c52SSatish Balay sum += (*v)*(*v); v++; 647d6de1c52SSatish Balay #endif 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay v = bmat->a; 6508a62d963SHong Zhang nz = bmat->nz*bs2; 6518a62d963SHong Zhang for (i=0; i<nz; i++) { 652aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 653329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 654d6de1c52SSatish Balay #else 655d6de1c52SSatish Balay sum += (*v)*(*v); v++; 656d6de1c52SSatish Balay #endif 657d6de1c52SSatish Balay } 6587adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 659064f8208SBarry Smith *nrm = sqrt(*nrm); 6608a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6618a62d963SHong Zhang PetscReal *tmp,*tmp2; 662899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 663fca92195SBarry Smith ierr = PetscMalloc2(mat->cmap->N,PetscReal,&tmp,mat->cmap->N,PetscReal,&tmp2);CHKERRQ(ierr); 664d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6658a62d963SHong Zhang v = amat->a; jj = amat->j; 6668a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6678a62d963SHong Zhang for (j=0; j<bs; j++){ 6688a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6698a62d963SHong Zhang for (row=0; row<bs; row++){ 6708a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6718a62d963SHong Zhang } 6728a62d963SHong Zhang } 6738a62d963SHong Zhang jj++; 6748a62d963SHong Zhang } 6758a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6768a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6778a62d963SHong Zhang for (j=0; j<bs; j++){ 6788a62d963SHong Zhang col = bs*garray[*jj] + j; 6798a62d963SHong Zhang for (row=0; row<bs; row++){ 6808a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6818a62d963SHong Zhang } 6828a62d963SHong Zhang } 6838a62d963SHong Zhang jj++; 6848a62d963SHong Zhang } 685d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6868a62d963SHong Zhang *nrm = 0.0; 687d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6888a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6898a62d963SHong Zhang } 690fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 6918a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 692577dd1f9SKris Buschelman PetscReal *sums; 693577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6948a62d963SHong Zhang sum = 0.0; 6958a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6968a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6978a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6988a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6998a62d963SHong Zhang for (i=0; i<nz; i++) { 7008a62d963SHong Zhang for (col=0; col<bs; col++){ 7018a62d963SHong Zhang for (row=0; row<bs; row++){ 7028a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang } 7068a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7078a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7088a62d963SHong Zhang for (i=0; i<nz; i++) { 7098a62d963SHong Zhang for (col=0; col<bs; col++){ 7108a62d963SHong Zhang for (row=0; row<bs; row++){ 7118a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang } 7158a62d963SHong Zhang for (row=0; row<bs; row++){ 7168a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7178a62d963SHong Zhang } 7188a62d963SHong Zhang } 7197adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 720577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 721d64ed03dSBarry Smith } else { 72229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 723d6de1c52SSatish Balay } 724d64ed03dSBarry Smith } 7253a40ed3dSBarry Smith PetscFunctionReturn(0); 726d6de1c52SSatish Balay } 72757b952d6SSatish Balay 728fef45726SSatish Balay /* 729fef45726SSatish Balay Creates the hash table, and sets the table 730fef45726SSatish Balay This table is created only once. 731fef45726SSatish Balay If new entried need to be added to the matrix 732fef45726SSatish Balay then the hash table has to be destroyed and 733fef45726SSatish Balay recreated. 734fef45726SSatish Balay */ 7354a2ae208SSatish Balay #undef __FUNCT__ 7364a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 737dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 738596b8d2eSBarry Smith { 739596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 740596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 741596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 742b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7436849ba73SBarry Smith PetscErrorCode ierr; 744fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 745899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 746b24ad042SBarry Smith PetscInt *HT,key; 7473eda8832SBarry Smith MatScalar **HD; 748329f5518SBarry Smith PetscReal tmp; 7496cf91177SBarry Smith #if defined(PETSC_USE_INFO) 750b24ad042SBarry Smith PetscInt ct=0,max=0; 7514a15367fSSatish Balay #endif 752fef45726SSatish Balay 753d64ed03dSBarry Smith PetscFunctionBegin; 754fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 755fef45726SSatish Balay 756fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 757fca92195SBarry Smith ht_size = baij->ht_size; 7580bdbc534SSatish Balay 759fef45726SSatish Balay /* Allocate Memory for Hash Table */ 760fca92195SBarry Smith ierr = PetscMalloc2(ht_size,MatScalar*,&baij->hd,ht_size,PetscInt,&baij->ht);CHKERRQ(ierr); 761fca92195SBarry Smith ierr = PetscMemzero(baij->hd,ht_size*sizeof(MatScalar*));CHKERRQ(ierr); 762fca92195SBarry Smith ierr = PetscMemzero(baij->ht,ht_size*sizeof(PetscInt));CHKERRQ(ierr); 763b9e4cc15SSatish Balay HD = baij->hd; 764a07cd24cSSatish Balay HT = baij->ht; 765b9e4cc15SSatish Balay 766596b8d2eSBarry Smith /* Loop Over A */ 7670bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 768596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7690bdbc534SSatish Balay row = i+rstart; 7700bdbc534SSatish Balay col = aj[j]+cstart; 771596b8d2eSBarry Smith 772187ce0cbSSatish Balay key = row*Nbs + col + 1; 773fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 774fca92195SBarry Smith for (k=0; k<ht_size; k++){ 775fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 776fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 777fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 778596b8d2eSBarry Smith break; 7796cf91177SBarry Smith #if defined(PETSC_USE_INFO) 780187ce0cbSSatish Balay } else { 781187ce0cbSSatish Balay ct++; 782187ce0cbSSatish Balay #endif 783596b8d2eSBarry Smith } 784187ce0cbSSatish Balay } 7856cf91177SBarry Smith #if defined(PETSC_USE_INFO) 786187ce0cbSSatish Balay if (k> max) max = k; 787187ce0cbSSatish Balay #endif 788596b8d2eSBarry Smith } 789596b8d2eSBarry Smith } 790596b8d2eSBarry Smith /* Loop Over B */ 7910bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 792596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7930bdbc534SSatish Balay row = i+rstart; 7940bdbc534SSatish Balay col = garray[bj[j]]; 795187ce0cbSSatish Balay key = row*Nbs + col + 1; 796fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 797fca92195SBarry Smith for (k=0; k<ht_size; k++){ 798fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 799fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 800fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 801596b8d2eSBarry Smith break; 8026cf91177SBarry Smith #if defined(PETSC_USE_INFO) 803187ce0cbSSatish Balay } else { 804187ce0cbSSatish Balay ct++; 805187ce0cbSSatish Balay #endif 806596b8d2eSBarry Smith } 807187ce0cbSSatish Balay } 8086cf91177SBarry Smith #if defined(PETSC_USE_INFO) 809187ce0cbSSatish Balay if (k> max) max = k; 810187ce0cbSSatish Balay #endif 811596b8d2eSBarry Smith } 812596b8d2eSBarry Smith } 813596b8d2eSBarry Smith 814596b8d2eSBarry Smith /* Print Summary */ 8156cf91177SBarry Smith #if defined(PETSC_USE_INFO) 816fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 817596b8d2eSBarry Smith if (HT[i]) {j++;} 818c38d4ed2SBarry Smith } 8191e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 820187ce0cbSSatish Balay #endif 8213a40ed3dSBarry Smith PetscFunctionReturn(0); 822596b8d2eSBarry Smith } 82357b952d6SSatish Balay 8244a2ae208SSatish Balay #undef __FUNCT__ 8254a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 826dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 827bbb85fb3SSatish Balay { 828bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 829dfbe8321SBarry Smith PetscErrorCode ierr; 830b24ad042SBarry Smith PetscInt nstash,reallocs; 831bbb85fb3SSatish Balay InsertMode addv; 832bbb85fb3SSatish Balay 833bbb85fb3SSatish Balay PetscFunctionBegin; 834bbb85fb3SSatish Balay if (baij->donotstash) { 835bbb85fb3SSatish Balay PetscFunctionReturn(0); 836bbb85fb3SSatish Balay } 837bbb85fb3SSatish Balay 838bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8397adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 840bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 842bbb85fb3SSatish Balay } 843bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 844bbb85fb3SSatish Balay 845d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8461e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8478798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8481e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 84946680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 851bbb85fb3SSatish Balay PetscFunctionReturn(0); 852bbb85fb3SSatish Balay } 853bbb85fb3SSatish Balay 8544a2ae208SSatish Balay #undef __FUNCT__ 8554a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 856dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 857bbb85fb3SSatish Balay { 858bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85991c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8606849ba73SBarry Smith PetscErrorCode ierr; 861b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 862e44c0bd4SBarry Smith PetscInt *row,*col; 863e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8643eda8832SBarry Smith MatScalar *val; 865bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 866b24ad042SBarry Smith PetscMPIInt n; 867bbb85fb3SSatish Balay 86891c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 869bbb85fb3SSatish Balay PetscFunctionBegin; 870bbb85fb3SSatish Balay if (!baij->donotstash) { 871a2d1c673SSatish Balay while (1) { 8728798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 873a2d1c673SSatish Balay if (!flg) break; 874a2d1c673SSatish Balay 875bbb85fb3SSatish Balay for (i=0; i<n;) { 876bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 877bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 878bbb85fb3SSatish Balay if (j < n) ncols = j-i; 879bbb85fb3SSatish Balay else ncols = n-i; 880bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88197e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 882bbb85fb3SSatish Balay i = j; 883bbb85fb3SSatish Balay } 884bbb85fb3SSatish Balay } 8858798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 886a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 887a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 888a2d1c673SSatish Balay restore the original flags */ 889a2d1c673SSatish Balay r1 = baij->roworiented; 890a2d1c673SSatish Balay r2 = a->roworiented; 89191c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8927c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8937c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89491c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 895a2d1c673SSatish Balay while (1) { 8968798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 897a2d1c673SSatish Balay if (!flg) break; 898a2d1c673SSatish Balay 899a2d1c673SSatish Balay for (i=0; i<n;) { 900a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 901a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 902a2d1c673SSatish Balay if (j < n) ncols = j-i; 903a2d1c673SSatish Balay else ncols = n-i; 90497e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 905a2d1c673SSatish Balay i = j; 906a2d1c673SSatish Balay } 907a2d1c673SSatish Balay } 9088798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 909a2d1c673SSatish Balay baij->roworiented = r1; 910a2d1c673SSatish Balay a->roworiented = r2; 91191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 912bbb85fb3SSatish Balay } 913bbb85fb3SSatish Balay 914bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 915bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 916bbb85fb3SSatish Balay 917bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 918bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 919bbb85fb3SSatish Balay /* 920bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 921bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 922bbb85fb3SSatish Balay */ 923bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9247adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 925bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 926bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 927bbb85fb3SSatish Balay } 928bbb85fb3SSatish Balay } 929bbb85fb3SSatish Balay 930bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 931bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 932bbb85fb3SSatish Balay } 93391c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 934bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 935bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 936bbb85fb3SSatish Balay 9376cf91177SBarry Smith #if defined(PETSC_USE_INFO) 938bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9391e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 940bbb85fb3SSatish Balay baij->ht_total_ct = 0; 941bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 942bbb85fb3SSatish Balay } 943bbb85fb3SSatish Balay #endif 944bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 945bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 946bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 947bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 948bbb85fb3SSatish Balay } 949bbb85fb3SSatish Balay 950fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 951606d414cSSatish Balay baij->rowvalues = 0; 952bbb85fb3SSatish Balay PetscFunctionReturn(0); 953bbb85fb3SSatish Balay } 95457b952d6SSatish Balay 9554a2ae208SSatish Balay #undef __FUNCT__ 9564a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9576849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 95857b952d6SSatish Balay { 95957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 960dfbe8321SBarry Smith PetscErrorCode ierr; 961b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 962d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96332077d6dSBarry Smith PetscTruth iascii,isdraw; 964b0a32e0cSBarry Smith PetscViewer sviewer; 965f3ef73ceSBarry Smith PetscViewerFormat format; 96657b952d6SSatish Balay 967d64ed03dSBarry Smith PetscFunctionBegin; 96832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 969fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97032077d6dSBarry Smith if (iascii) { 971b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 972456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9734e220ebcSLois Curfman McInnes MatInfo info; 9747adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 975d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 97677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 977*16608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 978d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 979e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 980d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 981e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 982b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98307d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98457b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9853a40ed3dSBarry Smith PetscFunctionReturn(0); 986fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 98777431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9883a40ed3dSBarry Smith PetscFunctionReturn(0); 98904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99004929863SHong Zhang PetscFunctionReturn(0); 99157b952d6SSatish Balay } 99257b952d6SSatish Balay } 99357b952d6SSatish Balay 9940f5bd95cSBarry Smith if (isdraw) { 995b0a32e0cSBarry Smith PetscDraw draw; 99657b952d6SSatish Balay PetscTruth isnull; 997b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 998b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 99957b952d6SSatish Balay } 100057b952d6SSatish Balay 100157b952d6SSatish Balay if (size == 1) { 10027adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100357b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1004d64ed03dSBarry Smith } else { 100557b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 100657b952d6SSatish Balay Mat A; 100757b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1008d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10093eda8832SBarry Smith MatScalar *a; 101057b952d6SSatish Balay 1011f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1012f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10137adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101457b952d6SSatish Balay if (!rank) { 1015f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1016d64ed03dSBarry Smith } else { 1017f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 101857b952d6SSatish Balay } 1019f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1020d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102257b952d6SSatish Balay 102357b952d6SSatish Balay /* copy over the A part */ 102457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 102557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1026b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay for (i=0; i<mbs; i++) { 1029899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103057b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103157b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1032899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103357b952d6SSatish Balay for (k=0; k<bs; k++) { 103497e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1035cee3aa6bSSatish Balay col++; a += bs; 103657b952d6SSatish Balay } 103757b952d6SSatish Balay } 103857b952d6SSatish Balay } 103957b952d6SSatish Balay /* copy over the B part */ 104057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104257b952d6SSatish Balay for (i=0; i<mbs; i++) { 1043899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104457b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 104557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 104657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 104757b952d6SSatish Balay for (k=0; k<bs; k++) { 104897e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1049cee3aa6bSSatish Balay col++; a += bs; 105057b952d6SSatish Balay } 105157b952d6SSatish Balay } 105257b952d6SSatish Balay } 1053606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10546d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10556d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 105655843e3eSBarry Smith /* 105755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1058b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 105955843e3eSBarry Smith */ 1060b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1061f14a1c24SBarry Smith if (!rank) { 10627adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10636831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106457b952d6SSatish Balay } 1065b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 106657b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 106757b952d6SSatish Balay } 10683a40ed3dSBarry Smith PetscFunctionReturn(0); 106957b952d6SSatish Balay } 107057b952d6SSatish Balay 10714a2ae208SSatish Balay #undef __FUNCT__ 10724a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1073dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107457b952d6SSatish Balay { 1075dfbe8321SBarry Smith PetscErrorCode ierr; 107632077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 107757b952d6SSatish Balay 1078d64ed03dSBarry Smith PetscFunctionBegin; 107932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1080fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1081b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1082fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108332077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10847b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10855cd90555SBarry Smith } else { 108679a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 108757b952d6SSatish Balay } 10883a40ed3dSBarry Smith PetscFunctionReturn(0); 108957b952d6SSatish Balay } 109057b952d6SSatish Balay 10914a2ae208SSatish Balay #undef __FUNCT__ 10924a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1093dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109479bdfe76SSatish Balay { 109579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1096dfbe8321SBarry Smith PetscErrorCode ierr; 109779bdfe76SSatish Balay 1098d64ed03dSBarry Smith PetscFunctionBegin; 1099aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1100d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110179bdfe76SSatish Balay #endif 11028798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11038798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110479bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 110579bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1106aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11079c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 110848e59246SSatish Balay #else 110905b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111048e59246SSatish Balay #endif 111105b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1112606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1113606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1114fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 111505b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1116fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1117899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1118606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1119901853e0SKris Buschelman 1120dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1121901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1122901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1123901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1124901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1125aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11283a40ed3dSBarry Smith PetscFunctionReturn(0); 112979bdfe76SSatish Balay } 113079bdfe76SSatish Balay 11314a2ae208SSatish Balay #undef __FUNCT__ 11324a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1133dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1134cee3aa6bSSatish Balay { 1135cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1136dfbe8321SBarry Smith PetscErrorCode ierr; 1137b24ad042SBarry Smith PetscInt nt; 1138cee3aa6bSSatish Balay 1139d64ed03dSBarry Smith PetscFunctionBegin; 1140e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1141d0f46423SBarry Smith if (nt != A->cmap->n) { 114229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114347b4a8eaSLois Curfman McInnes } 1144e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1145d0f46423SBarry Smith if (nt != A->rmap->n) { 114629bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 114747b4a8eaSLois Curfman McInnes } 1148ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1149f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1150ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1151f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11523a40ed3dSBarry Smith PetscFunctionReturn(0); 1153cee3aa6bSSatish Balay } 1154cee3aa6bSSatish Balay 11554a2ae208SSatish Balay #undef __FUNCT__ 11564a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1157dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1158cee3aa6bSSatish Balay { 1159cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1160dfbe8321SBarry Smith PetscErrorCode ierr; 1161d64ed03dSBarry Smith 1162d64ed03dSBarry Smith PetscFunctionBegin; 1163ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1164f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1165ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1166f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11673a40ed3dSBarry Smith PetscFunctionReturn(0); 1168cee3aa6bSSatish Balay } 1169cee3aa6bSSatish Balay 11704a2ae208SSatish Balay #undef __FUNCT__ 11714a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1172dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1173cee3aa6bSSatish Balay { 1174cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1175dfbe8321SBarry Smith PetscErrorCode ierr; 1176a5ff213dSBarry Smith PetscTruth merged; 1177cee3aa6bSSatish Balay 1178d64ed03dSBarry Smith PetscFunctionBegin; 1179a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1180cee3aa6bSSatish Balay /* do nondiagonal part */ 11817c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1182a5ff213dSBarry Smith if (!merged) { 1183cee3aa6bSSatish Balay /* send it on its way */ 1184ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do local part */ 11867c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1187cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1188a5ff213dSBarry Smith /* inserted in yy until the next line */ 1189ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190a5ff213dSBarry Smith } else { 1191a5ff213dSBarry Smith /* do local part */ 1192a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1193a5ff213dSBarry Smith /* send it on its way */ 1194ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1196ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1197a5ff213dSBarry Smith } 11983a40ed3dSBarry Smith PetscFunctionReturn(0); 1199cee3aa6bSSatish Balay } 1200cee3aa6bSSatish Balay 12014a2ae208SSatish Balay #undef __FUNCT__ 12024a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1203dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1204cee3aa6bSSatish Balay { 1205cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1206dfbe8321SBarry Smith PetscErrorCode ierr; 1207cee3aa6bSSatish Balay 1208d64ed03dSBarry Smith PetscFunctionBegin; 1209cee3aa6bSSatish Balay /* do nondiagonal part */ 12107c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1211cee3aa6bSSatish Balay /* send it on its way */ 1212ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1213cee3aa6bSSatish Balay /* do local part */ 12147c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1215cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1216cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1217cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1218ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12193a40ed3dSBarry Smith PetscFunctionReturn(0); 1220cee3aa6bSSatish Balay } 1221cee3aa6bSSatish Balay 1222cee3aa6bSSatish Balay /* 1223cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1224cee3aa6bSSatish Balay diagonal block 1225cee3aa6bSSatish Balay */ 12264a2ae208SSatish Balay #undef __FUNCT__ 12274a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1228dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1229cee3aa6bSSatish Balay { 1230cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1231dfbe8321SBarry Smith PetscErrorCode ierr; 1232d64ed03dSBarry Smith 1233d64ed03dSBarry Smith PetscFunctionBegin; 1234d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12353a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12363a40ed3dSBarry Smith PetscFunctionReturn(0); 1237cee3aa6bSSatish Balay } 1238cee3aa6bSSatish Balay 12394a2ae208SSatish Balay #undef __FUNCT__ 12404a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1241f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1242cee3aa6bSSatish Balay { 1243cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1244dfbe8321SBarry Smith PetscErrorCode ierr; 1245d64ed03dSBarry Smith 1246d64ed03dSBarry Smith PetscFunctionBegin; 1247f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1248f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12493a40ed3dSBarry Smith PetscFunctionReturn(0); 1250cee3aa6bSSatish Balay } 1251026e39d0SSatish Balay 12524a2ae208SSatish Balay #undef __FUNCT__ 12534a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1254b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1255acdf5bf4SSatish Balay { 1256acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 125787828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12586849ba73SBarry Smith PetscErrorCode ierr; 1259d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1260d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1261899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1262acdf5bf4SSatish Balay 1263d64ed03dSBarry Smith PetscFunctionBegin; 1264fca92195SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1265abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1266acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1267acdf5bf4SSatish Balay 1268acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1269acdf5bf4SSatish Balay /* 1270acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1271acdf5bf4SSatish Balay */ 1272acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1273b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1274bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1275acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1276acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1277acdf5bf4SSatish Balay } 1278fca92195SBarry Smith ierr = PetscMalloc2(max*bs2,PetscScalar,&mat->rowvalues,max*bs2,PetscInt,&mat->rowindices);CHKERRQ(ierr); 1279acdf5bf4SSatish Balay } 1280d9d09a02SSatish Balay lrow = row - brstart; 1281acdf5bf4SSatish Balay 1282acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1283acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1284acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1285f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1286f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1287acdf5bf4SSatish Balay nztot = nzA + nzB; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay cmap = mat->garray; 1290acdf5bf4SSatish Balay if (v || idx) { 1291acdf5bf4SSatish Balay if (nztot) { 1292acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1293b24ad042SBarry Smith PetscInt imark = -1; 1294acdf5bf4SSatish Balay if (v) { 1295acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1296acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1297d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1298acdf5bf4SSatish Balay else break; 1299acdf5bf4SSatish Balay } 1300acdf5bf4SSatish Balay imark = i; 1301acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1302acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1303acdf5bf4SSatish Balay } 1304acdf5bf4SSatish Balay if (idx) { 1305acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1306acdf5bf4SSatish Balay if (imark > -1) { 1307acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1308bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1309acdf5bf4SSatish Balay } 1310acdf5bf4SSatish Balay } else { 1311acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1312d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1313d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1314acdf5bf4SSatish Balay else break; 1315acdf5bf4SSatish Balay } 1316acdf5bf4SSatish Balay imark = i; 1317acdf5bf4SSatish Balay } 1318d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1319d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1320acdf5bf4SSatish Balay } 1321d64ed03dSBarry Smith } else { 1322d212a18eSSatish Balay if (idx) *idx = 0; 1323d212a18eSSatish Balay if (v) *v = 0; 1324d212a18eSSatish Balay } 1325acdf5bf4SSatish Balay } 1326acdf5bf4SSatish Balay *nz = nztot; 1327f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1328f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13293a40ed3dSBarry Smith PetscFunctionReturn(0); 1330acdf5bf4SSatish Balay } 1331acdf5bf4SSatish Balay 13324a2ae208SSatish Balay #undef __FUNCT__ 13334a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1334b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1335acdf5bf4SSatish Balay { 1336acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1337d64ed03dSBarry Smith 1338d64ed03dSBarry Smith PetscFunctionBegin; 1339abc0a331SBarry Smith if (!baij->getrowactive) { 134029bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1341acdf5bf4SSatish Balay } 1342acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13433a40ed3dSBarry Smith PetscFunctionReturn(0); 1344acdf5bf4SSatish Balay } 1345acdf5bf4SSatish Balay 13464a2ae208SSatish Balay #undef __FUNCT__ 13474a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1348dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 134958667388SSatish Balay { 135058667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1351dfbe8321SBarry Smith PetscErrorCode ierr; 1352d64ed03dSBarry Smith 1353d64ed03dSBarry Smith PetscFunctionBegin; 135458667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 135558667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13563a40ed3dSBarry Smith PetscFunctionReturn(0); 135758667388SSatish Balay } 13580ac07820SSatish Balay 13594a2ae208SSatish Balay #undef __FUNCT__ 13604a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1361dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13620ac07820SSatish Balay { 13634e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13644e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1365dfbe8321SBarry Smith PetscErrorCode ierr; 1366329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13670ac07820SSatish Balay 1368d64ed03dSBarry Smith PetscFunctionBegin; 1369d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13704e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13710e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1372de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13734e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13740e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1375de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13760ac07820SSatish Balay if (flag == MAT_LOCAL) { 13774e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13784e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13794e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13804e220ebcSLois Curfman McInnes info->memory = isend[3]; 13814e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13820ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13837adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13844e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13874e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1396d41123aaSBarry Smith } else { 139777431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 13980ac07820SSatish Balay } 13994e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14004e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14014e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14023a40ed3dSBarry Smith PetscFunctionReturn(0); 14030ac07820SSatish Balay } 14040ac07820SSatish Balay 14054a2ae208SSatish Balay #undef __FUNCT__ 14064a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14074e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 140858667388SSatish Balay { 140958667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1410dfbe8321SBarry Smith PetscErrorCode ierr; 141158667388SSatish Balay 1412d64ed03dSBarry Smith PetscFunctionBegin; 141312c028f9SKris Buschelman switch (op) { 1414512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 141512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 141628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1417a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 141812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14194e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14204e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142112c028f9SKris Buschelman break; 142212c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14234e0d8c25SBarry Smith a->roworiented = flg; 14244e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14254e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142612c028f9SKris Buschelman break; 14274e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1428290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 142912c028f9SKris Buschelman break; 143012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14314e0d8c25SBarry Smith a->donotstash = flg; 143212c028f9SKris Buschelman break; 143312c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14344e0d8c25SBarry Smith a->ht_flag = flg; 143512c028f9SKris Buschelman break; 143677e54ba9SKris Buschelman case MAT_SYMMETRIC: 143777e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14382188ac68SBarry Smith case MAT_HERMITIAN: 14392188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14404e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144177e54ba9SKris Buschelman break; 144212c028f9SKris Buschelman default: 1443ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1444d64ed03dSBarry Smith } 14453a40ed3dSBarry Smith PetscFunctionReturn(0); 144658667388SSatish Balay } 144758667388SSatish Balay 14484a2ae208SSatish Balay #undef __FUNCT__ 14494a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1450fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14510ac07820SSatish Balay { 14520ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14530ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14540ac07820SSatish Balay Mat B; 1455dfbe8321SBarry Smith PetscErrorCode ierr; 1456d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1457d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14583eda8832SBarry Smith MatScalar *a; 14590ac07820SSatish Balay 1460d64ed03dSBarry Smith PetscFunctionBegin; 1461e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1462fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14637adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1464d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14657adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1466d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1467fc4dec0aSBarry Smith } else { 1468fc4dec0aSBarry Smith B = *matout; 1469fc4dec0aSBarry Smith } 14700ac07820SSatish Balay 14710ac07820SSatish Balay /* copy over the A part */ 14720ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14730ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1474b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14750ac07820SSatish Balay 14760ac07820SSatish Balay for (i=0; i<mbs; i++) { 1477899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14780ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14790ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1480899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14810ac07820SSatish Balay for (k=0; k<bs; k++) { 148297e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14830ac07820SSatish Balay col++; a += bs; 14840ac07820SSatish Balay } 14850ac07820SSatish Balay } 14860ac07820SSatish Balay } 14870ac07820SSatish Balay /* copy over the B part */ 14880ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14890ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14900ac07820SSatish Balay for (i=0; i<mbs; i++) { 1491899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14920ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14930ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 14940ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 14950ac07820SSatish Balay for (k=0; k<bs; k++) { 149697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14970ac07820SSatish Balay col++; a += bs; 14980ac07820SSatish Balay } 14990ac07820SSatish Balay } 15000ac07820SSatish Balay } 1501606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15020ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15030ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15040ac07820SSatish Balay 1505815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15060ac07820SSatish Balay *matout = B; 15070ac07820SSatish Balay } else { 1508273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15090ac07820SSatish Balay } 15103a40ed3dSBarry Smith PetscFunctionReturn(0); 15110ac07820SSatish Balay } 15120e95ebc0SSatish Balay 15134a2ae208SSatish Balay #undef __FUNCT__ 15144a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1515dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15160e95ebc0SSatish Balay { 151736c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 151836c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1519dfbe8321SBarry Smith PetscErrorCode ierr; 1520b24ad042SBarry Smith PetscInt s1,s2,s3; 15210e95ebc0SSatish Balay 1522d64ed03dSBarry Smith PetscFunctionBegin; 152336c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 152436c4a09eSSatish Balay if (rr) { 152536c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 152629bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 152736c4a09eSSatish Balay /* Overlap communication with computation. */ 1528ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 152936c4a09eSSatish Balay } 15300e95ebc0SSatish Balay if (ll) { 15310e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153229bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1533a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15340e95ebc0SSatish Balay } 153536c4a09eSSatish Balay /* scale the diagonal block */ 153636c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 153736c4a09eSSatish Balay 153836c4a09eSSatish Balay if (rr) { 153936c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1540ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1541a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154236c4a09eSSatish Balay } 154336c4a09eSSatish Balay 15443a40ed3dSBarry Smith PetscFunctionReturn(0); 15450e95ebc0SSatish Balay } 15460e95ebc0SSatish Balay 15474a2ae208SSatish Balay #undef __FUNCT__ 15484a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1549f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15500ac07820SSatish Balay { 15510ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15526849ba73SBarry Smith PetscErrorCode ierr; 1553b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1554d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1555b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1556b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15577adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1558d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15597adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15600ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15610ac07820SSatish Balay MPI_Status recv_status,*send_status; 15626543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15636543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15646543fbbaSBarry Smith #endif 15650ac07820SSatish Balay 1566d64ed03dSBarry Smith PetscFunctionBegin; 15670ac07820SSatish Balay /* first count number of contributors to each processor */ 1568b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1569b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1570b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15716543fbbaSBarry Smith j = 0; 15720ac07820SSatish Balay for (i=0; i<N; i++) { 15736543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15746543fbbaSBarry Smith lastidx = idx; 15756543fbbaSBarry Smith for (; j<size; j++) { 1576357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15776543fbbaSBarry Smith nprocs[2*j]++; 15786543fbbaSBarry Smith nprocs[2*j+1] = 1; 15796543fbbaSBarry Smith owner[i] = j; 15806543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15816543fbbaSBarry Smith found = PETSC_TRUE; 15826543fbbaSBarry Smith #endif 15836543fbbaSBarry Smith break; 15840ac07820SSatish Balay } 15850ac07820SSatish Balay } 15866543fbbaSBarry Smith #if defined(PETSC_DEBUG) 158729bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15886543fbbaSBarry Smith found = PETSC_FALSE; 15896543fbbaSBarry Smith #endif 15900ac07820SSatish Balay } 1591c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15920ac07820SSatish Balay 15930ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1594c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 15950ac07820SSatish Balay 15960ac07820SSatish Balay /* post receives: */ 1597b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1598b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 15990ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1600b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16010ac07820SSatish Balay } 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* do sends: 16040ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16050ac07820SSatish Balay the ith processor 16060ac07820SSatish Balay */ 1607b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1608b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1609b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16100ac07820SSatish Balay starts[0] = 0; 1611c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16120ac07820SSatish Balay for (i=0; i<N; i++) { 16130ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16140ac07820SSatish Balay } 16150ac07820SSatish Balay 16160ac07820SSatish Balay starts[0] = 0; 1617c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16180ac07820SSatish Balay count = 0; 16190ac07820SSatish Balay for (i=0; i<size; i++) { 1620c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1621b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16220ac07820SSatish Balay } 16230ac07820SSatish Balay } 1624606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16250ac07820SSatish Balay 1626357c27ecSBarry Smith base = owners[rank]; 16270ac07820SSatish Balay 16280ac07820SSatish Balay /* wait on receives */ 1629fca92195SBarry Smith ierr = PetscMalloc2(nrecvs+1,PetscInt,&lens,nrecvs+1,PetscInt,&source);CHKERRQ(ierr); 1630fca92195SBarry Smith count = nrecvs; 1631fca92195SBarry Smith slen = 0; 16320ac07820SSatish Balay while (count) { 1633ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16340ac07820SSatish Balay /* unpack receives into our local space */ 1635b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16360ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16370ac07820SSatish Balay lens[imdex] = n; 16380ac07820SSatish Balay slen += n; 16390ac07820SSatish Balay count--; 16400ac07820SSatish Balay } 1641606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16420ac07820SSatish Balay 16430ac07820SSatish Balay /* move the data into the send scatter */ 1644b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16450ac07820SSatish Balay count = 0; 16460ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16470ac07820SSatish Balay values = rvalues + i*nmax; 16480ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16490ac07820SSatish Balay lrows[count++] = values[j] - base; 16500ac07820SSatish Balay } 16510ac07820SSatish Balay } 1652606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1653fca92195SBarry Smith ierr = PetscFree2(lens,source);CHKERRQ(ierr); 1654606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1655606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16560ac07820SSatish Balay 16570ac07820SSatish Balay /* actually zap the local rows */ 165872dacd9aSBarry Smith /* 165972dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1660a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166172dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166272dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 166372dacd9aSBarry Smith 166472dacd9aSBarry Smith */ 16659c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1666f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1667d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1668f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1669f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1670f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1671fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 167229bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1673512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16746525c446SSatish Balay } 1675a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1676a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1677f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1678a07cd24cSSatish Balay } 1679a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1680a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16819c957beeSSatish Balay } else { 1682f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1683a07cd24cSSatish Balay } 16849c957beeSSatish Balay 1685606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1686a07cd24cSSatish Balay 16870ac07820SSatish Balay /* wait on sends */ 16880ac07820SSatish Balay if (nsends) { 168982502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1690ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1691606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16920ac07820SSatish Balay } 1693606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1694606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 16950ac07820SSatish Balay 16963a40ed3dSBarry Smith PetscFunctionReturn(0); 16970ac07820SSatish Balay } 169872dacd9aSBarry Smith 16994a2ae208SSatish Balay #undef __FUNCT__ 17004a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1701dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1702bb5a7306SBarry Smith { 1703bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1704dfbe8321SBarry Smith PetscErrorCode ierr; 1705d64ed03dSBarry Smith 1706d64ed03dSBarry Smith PetscFunctionBegin; 1707bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17083a40ed3dSBarry Smith PetscFunctionReturn(0); 1709bb5a7306SBarry Smith } 1710bb5a7306SBarry Smith 17116849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17120ac07820SSatish Balay 17134a2ae208SSatish Balay #undef __FUNCT__ 17144a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1715dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17167fc3c18eSBarry Smith { 17177fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17187fc3c18eSBarry Smith Mat a,b,c,d; 17197fc3c18eSBarry Smith PetscTruth flg; 1720dfbe8321SBarry Smith PetscErrorCode ierr; 17217fc3c18eSBarry Smith 17227fc3c18eSBarry Smith PetscFunctionBegin; 17237fc3c18eSBarry Smith a = matA->A; b = matA->B; 17247fc3c18eSBarry Smith c = matB->A; d = matB->B; 17257fc3c18eSBarry Smith 17267fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1727abc0a331SBarry Smith if (flg) { 17287fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17297fc3c18eSBarry Smith } 17307adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17317fc3c18eSBarry Smith PetscFunctionReturn(0); 17327fc3c18eSBarry Smith } 17337fc3c18eSBarry Smith 17343c896bc6SHong Zhang #undef __FUNCT__ 17353c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17363c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17373c896bc6SHong Zhang { 17383c896bc6SHong Zhang PetscErrorCode ierr; 17393c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17403c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17413c896bc6SHong Zhang 17423c896bc6SHong Zhang PetscFunctionBegin; 17433c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17443c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17453c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17463c896bc6SHong Zhang } else { 17473c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17483c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17493c896bc6SHong Zhang } 17503c896bc6SHong Zhang PetscFunctionReturn(0); 17513c896bc6SHong Zhang } 1752273d9f13SBarry Smith 17534a2ae208SSatish Balay #undef __FUNCT__ 17544a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1755dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1756273d9f13SBarry Smith { 1757dfbe8321SBarry Smith PetscErrorCode ierr; 1758273d9f13SBarry Smith 1759273d9f13SBarry Smith PetscFunctionBegin; 1760db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1761273d9f13SBarry Smith PetscFunctionReturn(0); 1762273d9f13SBarry Smith } 1763273d9f13SBarry Smith 17644fe895cdSHong Zhang #undef __FUNCT__ 17654fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17664fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17674fe895cdSHong Zhang { 17684fe895cdSHong Zhang PetscErrorCode ierr; 17694fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17704fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17714fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17724fe895cdSHong Zhang 17734fe895cdSHong Zhang PetscFunctionBegin; 17744fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17754fe895cdSHong Zhang PetscScalar alpha = a; 17764fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17774fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17780805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17794fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17804fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17814fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17820805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17834fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17844fe895cdSHong Zhang } else { 17854fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17864fe895cdSHong Zhang } 17874fe895cdSHong Zhang PetscFunctionReturn(0); 17884fe895cdSHong Zhang } 17894fe895cdSHong Zhang 179099cafbc1SBarry Smith #undef __FUNCT__ 179141c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 179241c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 179341c166b1SJed Brown { 179441c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1795829b6ff0SJed Brown PetscInt rbs,cbs; 179641c166b1SJed Brown PetscErrorCode ierr; 179741c166b1SJed Brown 179841c166b1SJed Brown PetscFunctionBegin; 179941c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 180041c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 1801829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->rmap,&rbs);CHKERRQ(ierr); 1802829b6ff0SJed Brown ierr = PetscLayoutGetBlockSize(A->cmap,&cbs);CHKERRQ(ierr); 1803829b6ff0SJed Brown if (rbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,rbs); 1804829b6ff0SJed Brown if (cbs != bs) SETERRQ2(PETSC_ERR_ARG_SIZ,"Attempt to set block size %d with BAIJ %d",bs,cbs); 180541c166b1SJed Brown PetscFunctionReturn(0); 180641c166b1SJed Brown } 180741c166b1SJed Brown 180841c166b1SJed Brown #undef __FUNCT__ 180999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 181099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 181199cafbc1SBarry Smith { 181299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181399cafbc1SBarry Smith PetscErrorCode ierr; 181499cafbc1SBarry Smith 181599cafbc1SBarry Smith PetscFunctionBegin; 181699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 181799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 181899cafbc1SBarry Smith PetscFunctionReturn(0); 181999cafbc1SBarry Smith } 182099cafbc1SBarry Smith 182199cafbc1SBarry Smith #undef __FUNCT__ 182299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 182399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 182499cafbc1SBarry Smith { 182599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 182699cafbc1SBarry Smith PetscErrorCode ierr; 182799cafbc1SBarry Smith 182899cafbc1SBarry Smith PetscFunctionBegin; 182999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 183099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 183199cafbc1SBarry Smith PetscFunctionReturn(0); 183299cafbc1SBarry Smith } 183399cafbc1SBarry Smith 183482094794SBarry Smith #undef __FUNCT__ 183582094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18364aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18374aa3045dSJed Brown { 18384aa3045dSJed Brown PetscErrorCode ierr; 18394aa3045dSJed Brown IS iscol_local; 18404aa3045dSJed Brown PetscInt csize; 18414aa3045dSJed Brown 18424aa3045dSJed Brown PetscFunctionBegin; 18434aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1844b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1845b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1846b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1847b79d0421SJed Brown } else { 18484aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1849b79d0421SJed Brown } 18504aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1851b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1852b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18534aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1854b79d0421SJed Brown } 18554aa3045dSJed Brown PetscFunctionReturn(0); 18564aa3045dSJed Brown } 18574aa3045dSJed Brown 18584aa3045dSJed Brown #undef __FUNCT__ 18594aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 186082094794SBarry Smith /* 186182094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 186282094794SBarry Smith in local and then by concatenating the local matrices the end result. 186382094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 186482094794SBarry Smith */ 18654aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 186682094794SBarry Smith { 186782094794SBarry Smith PetscErrorCode ierr; 186882094794SBarry Smith PetscMPIInt rank,size; 186982094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 187082094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 187182094794SBarry Smith Mat *local,M,Mreuse; 187282094794SBarry Smith MatScalar *vwork,*aa; 187382094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 187482094794SBarry Smith Mat_SeqBAIJ *aij; 187582094794SBarry Smith 187682094794SBarry Smith 187782094794SBarry Smith PetscFunctionBegin; 187882094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 187982094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188082094794SBarry Smith 188182094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 188282094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 188382094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 188482094794SBarry Smith local = &Mreuse; 188582094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 188682094794SBarry Smith } else { 188782094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 188882094794SBarry Smith Mreuse = *local; 188982094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 189082094794SBarry Smith } 189182094794SBarry Smith 189282094794SBarry Smith /* 189382094794SBarry Smith m - number of local rows 189482094794SBarry Smith n - number of columns (same on all processors) 189582094794SBarry Smith rstart - first row in new global matrix generated 189682094794SBarry Smith */ 189782094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 189882094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 189982094794SBarry Smith m = m/bs; 190082094794SBarry Smith n = n/bs; 190182094794SBarry Smith 190282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 190382094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 190482094794SBarry Smith ii = aij->i; 190582094794SBarry Smith jj = aij->j; 190682094794SBarry Smith 190782094794SBarry Smith /* 190882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 190982094794SBarry Smith portions of the matrix in order to do correct preallocation 191082094794SBarry Smith */ 191182094794SBarry Smith 191282094794SBarry Smith /* first get start and end of "diagonal" columns */ 191382094794SBarry Smith if (csize == PETSC_DECIDE) { 191482094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 191582094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 191682094794SBarry Smith nlocal = m; 191782094794SBarry Smith } else { 191882094794SBarry Smith nlocal = n/size + ((n % size) > rank); 191982094794SBarry Smith } 192082094794SBarry Smith } else { 192182094794SBarry Smith nlocal = csize/bs; 192282094794SBarry Smith } 192382094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 192482094794SBarry Smith rstart = rend - nlocal; 192582094794SBarry Smith if (rank == size - 1 && rend != n) { 192682094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 192782094794SBarry Smith } 192882094794SBarry Smith 192982094794SBarry Smith /* next, compute all the lengths */ 193082094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 193182094794SBarry Smith olens = dlens + m; 193282094794SBarry Smith for (i=0; i<m; i++) { 193382094794SBarry Smith jend = ii[i+1] - ii[i]; 193482094794SBarry Smith olen = 0; 193582094794SBarry Smith dlen = 0; 193682094794SBarry Smith for (j=0; j<jend; j++) { 193782094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 193882094794SBarry Smith else dlen++; 193982094794SBarry Smith jj++; 194082094794SBarry Smith } 194182094794SBarry Smith olens[i] = olen; 194282094794SBarry Smith dlens[i] = dlen; 194382094794SBarry Smith } 194482094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 194582094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 194682094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 194782094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 194882094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 194982094794SBarry Smith } else { 195082094794SBarry Smith PetscInt ml,nl; 195182094794SBarry Smith 195282094794SBarry Smith M = *newmat; 195382094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 195482094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 195582094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 195682094794SBarry Smith /* 195782094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 195882094794SBarry Smith rather than the slower MatSetValues(). 195982094794SBarry Smith */ 196082094794SBarry Smith M->was_assembled = PETSC_TRUE; 196182094794SBarry Smith M->assembled = PETSC_FALSE; 196282094794SBarry Smith } 196382094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 196482094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 196582094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 196682094794SBarry Smith ii = aij->i; 196782094794SBarry Smith jj = aij->j; 196882094794SBarry Smith aa = aij->a; 196982094794SBarry Smith for (i=0; i<m; i++) { 197082094794SBarry Smith row = rstart/bs + i; 197182094794SBarry Smith nz = ii[i+1] - ii[i]; 197282094794SBarry Smith cwork = jj; jj += nz; 197382094794SBarry Smith vwork = aa; aa += nz; 197482094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 197582094794SBarry Smith } 197682094794SBarry Smith 197782094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 197882094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 197982094794SBarry Smith *newmat = M; 198082094794SBarry Smith 198182094794SBarry Smith /* save submatrix used in processor for next request */ 198282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 198382094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 198482094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 198582094794SBarry Smith } 198682094794SBarry Smith 198782094794SBarry Smith PetscFunctionReturn(0); 198882094794SBarry Smith } 198982094794SBarry Smith 199082094794SBarry Smith #undef __FUNCT__ 199182094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 199282094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 199382094794SBarry Smith { 199482094794SBarry Smith MPI_Comm comm,pcomm; 199582094794SBarry Smith PetscInt first,local_size,nrows; 199682094794SBarry Smith const PetscInt *rows; 1997dbf0e21dSBarry Smith PetscMPIInt size; 199882094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 199982094794SBarry Smith PetscErrorCode ierr; 200082094794SBarry Smith 200182094794SBarry Smith PetscFunctionBegin; 200282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 200382094794SBarry Smith /* make a collective version of 'rowp' */ 200482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 200582094794SBarry Smith if (pcomm==comm) { 200682094794SBarry Smith crowp = rowp; 200782094794SBarry Smith } else { 200882094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 200982094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 201082094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 201182094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 201282094794SBarry Smith } 201382094794SBarry Smith /* collect the global row permutation and invert it */ 201482094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 201582094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 201682094794SBarry Smith if (pcomm!=comm) { 201782094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 201882094794SBarry Smith } 201982094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 202082094794SBarry Smith /* get the local target indices */ 202182094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 202282094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 202382094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 202482094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 202582094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 202782094794SBarry Smith /* the column permutation is so much easier; 202882094794SBarry Smith make a local version of 'colp' and invert it */ 202982094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2030dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2031dbf0e21dSBarry Smith if (size==1) { 203282094794SBarry Smith lcolp = colp; 203382094794SBarry Smith } else { 203482094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 203582094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 203682094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 203782094794SBarry Smith } 2038dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 203982094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20404aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2041dbf0e21dSBarry Smith if (size>1) { 204282094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 204382094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 204482094794SBarry Smith } 204582094794SBarry Smith /* now we just get the submatrix */ 20464aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 204782094794SBarry Smith /* clean up */ 204882094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 204982094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 205082094794SBarry Smith PetscFunctionReturn(0); 205182094794SBarry Smith } 205282094794SBarry Smith 20538c7482ecSBarry Smith #undef __FUNCT__ 20548c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20558c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20568c7482ecSBarry Smith { 20578c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20588c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20598c7482ecSBarry Smith 20608c7482ecSBarry Smith PetscFunctionBegin; 20618c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20628c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20638c7482ecSBarry Smith PetscFunctionReturn(0); 20648c7482ecSBarry Smith } 20658c7482ecSBarry Smith 2066f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2067f6d58c54SBarry Smith 2068f6d58c54SBarry Smith #undef __FUNCT__ 2069f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2070f6d58c54SBarry Smith /* 2071f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2072f6d58c54SBarry Smith */ 2073f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2074f6d58c54SBarry Smith { 2075f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2076f6d58c54SBarry Smith PetscErrorCode ierr; 2077f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2078f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2079f6d58c54SBarry Smith const PetscInt *is; 2080f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2081f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2082f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2083f6d58c54SBarry Smith IS *isa; 2084f6d58c54SBarry Smith PetscTruth done,flg; 2085f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2086f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2087f6d58c54SBarry Smith 2088f6d58c54SBarry Smith PetscFunctionBegin; 2089f6d58c54SBarry Smith if (!mat->assembled) { 2090f6d58c54SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2091f6d58c54SBarry Smith } 2092f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2093f6d58c54SBarry Smith 2094f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2095f6d58c54SBarry Smith 2096f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2097f6d58c54SBarry Smith M = mat->rmap->n/bs; 2098f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2099f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2100f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2101f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2102f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2103f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2104f6d58c54SBarry Smith 2105f6d58c54SBarry Smith c->ncolors = nis; 2106f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2107f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2108f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2109f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2110f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2111f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2112f6d58c54SBarry Smith 2113f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2114f6d58c54SBarry Smith if (!baij->colmap) { 2115f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2116f6d58c54SBarry Smith } 2117f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2118f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2119f6d58c54SBarry Smith 2120f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2121f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2122f6d58c54SBarry Smith 2123f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2124f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2125f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2126f6d58c54SBarry Smith c->ncolumns[i] = n; 2127f6d58c54SBarry Smith if (n) { 2128f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2129f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2130f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2131f6d58c54SBarry Smith } else { 2132f6d58c54SBarry Smith c->columns[i] = 0; 2133f6d58c54SBarry Smith } 2134f6d58c54SBarry Smith 2135f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2136f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2137f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2138fca92195SBarry Smith ierr = PetscMalloc2(size,PetscMPIInt,&ncolsonproc,size,PetscMPIInt,&disp);CHKERRQ(ierr); 2139f6d58c54SBarry Smith 2140f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2141f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2142f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2143f6d58c54SBarry Smith if (!nctot) { 2144f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2145f6d58c54SBarry Smith } 2146f6d58c54SBarry Smith 2147f6d58c54SBarry Smith disp[0] = 0; 2148f6d58c54SBarry Smith for (j=1; j<size; j++) { 2149f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2150f6d58c54SBarry Smith } 2151f6d58c54SBarry Smith 2152f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2153f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2154f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2155fca92195SBarry Smith ierr = PetscFree2(ncolsonproc,disp);CHKERRQ(ierr); 2156f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2157f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2158f6d58c54SBarry Smith nctot = n; 2159f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2160f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2161f6d58c54SBarry Smith } else { 2162f6d58c54SBarry Smith SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2163f6d58c54SBarry Smith } 2164f6d58c54SBarry Smith 2165f6d58c54SBarry Smith /* 2166f6d58c54SBarry Smith Mark all rows affect by these columns 2167f6d58c54SBarry Smith */ 2168f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2169f6d58c54SBarry Smith flg = PETSC_FALSE; 2170f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2171f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2172f6d58c54SBarry Smith /* crude, fast version */ 2173f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2174f6d58c54SBarry Smith /* loop over columns*/ 2175f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2176f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2177f6d58c54SBarry Smith col = ltog[cols[j]]; 2178f6d58c54SBarry Smith } else { 2179f6d58c54SBarry Smith col = cols[j]; 2180f6d58c54SBarry Smith } 2181f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2182f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2183f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2184f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2185f6d58c54SBarry Smith } else { 2186f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2187f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr) 2188f6d58c54SBarry Smith colb --; 2189f6d58c54SBarry Smith #else 2190f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2191f6d58c54SBarry Smith #endif 2192f6d58c54SBarry Smith if (colb == -1) { 2193f6d58c54SBarry Smith m = 0; 2194f6d58c54SBarry Smith } else { 2195f6d58c54SBarry Smith colb = colb/bs; 2196f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2197f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2198f6d58c54SBarry Smith } 2199f6d58c54SBarry Smith } 2200f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2201f6d58c54SBarry Smith for (k=0; k<m; k++) { 2202f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2203f6d58c54SBarry Smith } 2204f6d58c54SBarry Smith } 2205f6d58c54SBarry Smith 2206f6d58c54SBarry Smith /* count the number of hits */ 2207f6d58c54SBarry Smith nrows = 0; 2208f6d58c54SBarry Smith for (j=0; j<M; j++) { 2209f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2210f6d58c54SBarry Smith } 2211f6d58c54SBarry Smith c->nrows[i] = nrows; 2212f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2213f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2214f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2215f6d58c54SBarry Smith nrows = 0; 2216f6d58c54SBarry Smith for (j=0; j<M; j++) { 2217f6d58c54SBarry Smith if (rowhit[j]) { 2218f6d58c54SBarry Smith c->rows[i][nrows] = j; 2219f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2220f6d58c54SBarry Smith nrows++; 2221f6d58c54SBarry Smith } 2222f6d58c54SBarry Smith } 2223f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2224f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2225f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2226f6d58c54SBarry Smith rowhit[M] = M; 2227f6d58c54SBarry Smith nrows = 0; 2228f6d58c54SBarry Smith /* loop over columns*/ 2229f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2230f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2231f6d58c54SBarry Smith col = ltog[cols[j]]; 2232f6d58c54SBarry Smith } else { 2233f6d58c54SBarry Smith col = cols[j]; 2234f6d58c54SBarry Smith } 2235f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2236f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2237f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2238f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2239f6d58c54SBarry Smith } else { 2240f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2241f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2242f6d58c54SBarry Smith colb --; 2243f6d58c54SBarry Smith #else 2244f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2245f6d58c54SBarry Smith #endif 2246f6d58c54SBarry Smith if (colb == -1) { 2247f6d58c54SBarry Smith m = 0; 2248f6d58c54SBarry Smith } else { 2249f6d58c54SBarry Smith colb = colb/bs; 2250f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2251f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2252f6d58c54SBarry Smith } 2253f6d58c54SBarry Smith } 2254f6d58c54SBarry Smith 2255f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2256f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2257f6d58c54SBarry Smith for (k=0; k<m; k++) { 2258f6d58c54SBarry Smith currentcol = *rows++; 2259f6d58c54SBarry Smith /* is it already in the list? */ 2260f6d58c54SBarry Smith do { 2261f6d58c54SBarry Smith mfm = fm; 2262f6d58c54SBarry Smith fm = rowhit[fm]; 2263f6d58c54SBarry Smith } while (fm < currentcol); 2264f6d58c54SBarry Smith /* not in list so add it */ 2265f6d58c54SBarry Smith if (fm != currentcol) { 2266f6d58c54SBarry Smith nrows++; 2267f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2268f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2269f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2270f6d58c54SBarry Smith rowhit[currentcol] = fm; 2271f6d58c54SBarry Smith fm = currentcol; 2272f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2273f6d58c54SBarry Smith } else { 2274f6d58c54SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2275f6d58c54SBarry Smith } 2276f6d58c54SBarry Smith } 2277f6d58c54SBarry Smith } 2278f6d58c54SBarry Smith c->nrows[i] = nrows; 2279f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2280f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2281f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2282f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2283f6d58c54SBarry Smith nrows = 0; 2284f6d58c54SBarry Smith fm = rowhit[M]; 2285f6d58c54SBarry Smith do { 2286f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2287f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2288f6d58c54SBarry Smith fm = rowhit[fm]; 2289f6d58c54SBarry Smith } while (fm < M); 2290f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2291f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2292f6d58c54SBarry Smith } 2293f6d58c54SBarry Smith 2294f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2295f6d58c54SBarry Smith /* 2296f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2297f6d58c54SBarry Smith */ 2298f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2299f6d58c54SBarry Smith PetscInt *garray; 2300f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2301f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2302f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2303f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2304f6d58c54SBarry Smith } 2305f6d58c54SBarry Smith } 2306f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2307f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2308f6d58c54SBarry Smith CHKMEMQ; 2309f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2310f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2311f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2312f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2313f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2314f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2315f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2316f6d58c54SBarry Smith colb = col - cstart; 2317f6d58c54SBarry Smith } else { 2318f6d58c54SBarry Smith /* column is in "off-processor" part */ 2319f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2320f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2321f6d58c54SBarry Smith colb --; 2322f6d58c54SBarry Smith #else 2323f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2324f6d58c54SBarry Smith #endif 2325f6d58c54SBarry Smith colb = colb/bs; 2326f6d58c54SBarry Smith colb += cend - cstart; 2327f6d58c54SBarry Smith } 2328f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2329f6d58c54SBarry Smith } 2330f6d58c54SBarry Smith } 2331f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2332f6d58c54SBarry Smith /* Get gtol mapping */ 2333f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2334f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2335f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2336f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2337f6d58c54SBarry Smith 2338f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2339f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2340f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2341f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2342f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2343f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2344f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2345f6d58c54SBarry Smith } 2346f6d58c54SBarry Smith } 2347f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2348f6d58c54SBarry Smith } 2349f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2350f6d58c54SBarry Smith 2351f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2352f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2353f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2354f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2355f6d58c54SBarry Smith CHKMEMQ; 2356f6d58c54SBarry Smith PetscFunctionReturn(0); 2357f6d58c54SBarry Smith } 2358f6d58c54SBarry Smith 2359f6d58c54SBarry Smith #undef __FUNCT__ 2360f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2361f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2362f6d58c54SBarry Smith { 2363f6d58c54SBarry Smith Mat B; 2364f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2365f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2366f6d58c54SBarry Smith Mat_SeqAIJ *b; 2367f6d58c54SBarry Smith PetscErrorCode ierr; 2368f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2369f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2370f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2371f6d58c54SBarry Smith 2372f6d58c54SBarry Smith PetscFunctionBegin; 2373f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2374f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2375f6d58c54SBarry Smith 2376f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2377f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2378f6d58c54SBarry Smith */ 2379f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2380f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2381f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2382f6d58c54SBarry Smith } 2383f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2384f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2385f6d58c54SBarry Smith displs = recvcounts + size; 2386f6d58c54SBarry Smith for (i=0; i<size; i++) { 2387f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2388f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2389f6d58c54SBarry Smith } 2390f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2391f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2392f6d58c54SBarry Smith #else 2393f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2394f6d58c54SBarry Smith #endif 2395f6d58c54SBarry Smith /* --------------------------------------------------------------- 2396f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2397f6d58c54SBarry Smith */ 2398f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2399f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2400f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2401f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2402f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2403f6d58c54SBarry Smith 2404f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2405f6d58c54SBarry Smith Copy my part of matrix column indices over 2406f6d58c54SBarry Smith */ 2407f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2408f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2409f6d58c54SBarry Smith a_jsendbuf = ad->j; 2410f6d58c54SBarry Smith b_jsendbuf = bd->j; 2411f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2412f6d58c54SBarry Smith cnt = 0; 2413f6d58c54SBarry Smith for (i=0; i<n; i++) { 2414f6d58c54SBarry Smith 2415f6d58c54SBarry Smith /* put in lower diagonal portion */ 2416f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2417f6d58c54SBarry Smith while (m > 0) { 2418f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2419f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2420f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2421f6d58c54SBarry Smith m--; 2422f6d58c54SBarry Smith } 2423f6d58c54SBarry Smith 2424f6d58c54SBarry Smith /* put in diagonal portion */ 2425f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2426f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2427f6d58c54SBarry Smith } 2428f6d58c54SBarry Smith 2429f6d58c54SBarry Smith /* put in upper diagonal portion */ 2430f6d58c54SBarry Smith while (m-- > 0) { 2431f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2432f6d58c54SBarry Smith } 2433f6d58c54SBarry Smith } 2434f6d58c54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2435f6d58c54SBarry Smith 2436f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2437f6d58c54SBarry Smith Gather all column indices to all processors 2438f6d58c54SBarry Smith */ 2439f6d58c54SBarry Smith for (i=0; i<size; i++) { 2440f6d58c54SBarry Smith recvcounts[i] = 0; 2441f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2442f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2443f6d58c54SBarry Smith } 2444f6d58c54SBarry Smith } 2445f6d58c54SBarry Smith displs[0] = 0; 2446f6d58c54SBarry Smith for (i=1; i<size; i++) { 2447f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2448f6d58c54SBarry Smith } 2449f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2450f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2451f6d58c54SBarry Smith #else 2452f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2453f6d58c54SBarry Smith #endif 2454f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2455f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2456f6d58c54SBarry Smith */ 2457f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2458f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2459f6d58c54SBarry Smith /* set the b->i indices */ 2460f6d58c54SBarry Smith b->i[0] = 0; 2461f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2462f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2463f6d58c54SBarry Smith } 2464f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2465f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2466f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2467f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2468f6d58c54SBarry Smith 2469f6d58c54SBarry Smith if (A->symmetric){ 2470f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2471f6d58c54SBarry Smith } else if (A->hermitian) { 2472f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2473f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2474f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2475f6d58c54SBarry Smith } 2476f6d58c54SBarry Smith *newmat = B; 2477f6d58c54SBarry Smith PetscFunctionReturn(0); 2478f6d58c54SBarry Smith } 2479f6d58c54SBarry Smith 2480b1a666ecSBarry Smith #undef __FUNCT__ 2481b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2482b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2483b1a666ecSBarry Smith { 2484b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2485b1a666ecSBarry Smith PetscErrorCode ierr; 2486b1a666ecSBarry Smith Vec bb1 = 0; 2487b1a666ecSBarry Smith 2488b1a666ecSBarry Smith PetscFunctionBegin; 2489b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2490b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2491b1a666ecSBarry Smith } 2492b1a666ecSBarry Smith 2493b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2494b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2495b1a666ecSBarry Smith PetscFunctionReturn(0); 2496b1a666ecSBarry Smith } 2497b1a666ecSBarry Smith 2498b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2499b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2500b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2501b1a666ecSBarry Smith its--; 2502b1a666ecSBarry Smith } 2503b1a666ecSBarry Smith 2504b1a666ecSBarry Smith while (its--) { 2505b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2506b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2507b1a666ecSBarry Smith 2508b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2509b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2510b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2511b1a666ecSBarry Smith 2512b1a666ecSBarry Smith /* local sweep */ 2513b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2514b1a666ecSBarry Smith } 2515b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2516b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2517b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2518b1a666ecSBarry Smith its--; 2519b1a666ecSBarry Smith } 2520b1a666ecSBarry Smith while (its--) { 2521b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2522b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2523b1a666ecSBarry Smith 2524b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2525b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2526b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2527b1a666ecSBarry Smith 2528b1a666ecSBarry Smith /* local sweep */ 2529b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2530b1a666ecSBarry Smith } 2531b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2532b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2533b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2534b1a666ecSBarry Smith its--; 2535b1a666ecSBarry Smith } 2536b1a666ecSBarry Smith while (its--) { 2537b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2538b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2539b1a666ecSBarry Smith 2540b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2541b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2542b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2543b1a666ecSBarry Smith 2544b1a666ecSBarry Smith /* local sweep */ 2545b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2546b1a666ecSBarry Smith } 2547b1a666ecSBarry Smith } else { 2548b1a666ecSBarry Smith SETERRQ(PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2549b1a666ecSBarry Smith } 2550b1a666ecSBarry Smith 2551b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2552b1a666ecSBarry Smith PetscFunctionReturn(0); 2553b1a666ecSBarry Smith } 2554b1a666ecSBarry Smith 2555f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2556f6d58c54SBarry Smith 25578c7482ecSBarry Smith 255879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2559cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2560cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2561cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2562cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2563cc2dc46cSBarry Smith MatMult_MPIBAIJ, 256497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25657c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25667c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2567cc2dc46cSBarry Smith 0, 2568cc2dc46cSBarry Smith 0, 2569cc2dc46cSBarry Smith 0, 257097304618SKris Buschelman /*10*/ 0, 2571cc2dc46cSBarry Smith 0, 2572cc2dc46cSBarry Smith 0, 2573b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2574cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 257597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25767fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2577cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2578cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2579cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 258097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2581cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2582cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2583cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2584d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2585cc2dc46cSBarry Smith 0, 2586cc2dc46cSBarry Smith 0, 2587cc2dc46cSBarry Smith 0, 2588cc2dc46cSBarry Smith 0, 2589d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2590273d9f13SBarry Smith 0, 2591cc2dc46cSBarry Smith 0, 2592cc2dc46cSBarry Smith 0, 2593cc2dc46cSBarry Smith 0, 2594d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2595cc2dc46cSBarry Smith 0, 2596cc2dc46cSBarry Smith 0, 2597cc2dc46cSBarry Smith 0, 2598cc2dc46cSBarry Smith 0, 2599d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2600cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2601cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2602cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 26033c896bc6SHong Zhang MatCopy_MPIBAIJ, 2604d519adbfSMatthew Knepley /*44*/ 0, 2605cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2606cc2dc46cSBarry Smith 0, 2607cc2dc46cSBarry Smith 0, 2608cc2dc46cSBarry Smith 0, 260941c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2610cc2dc46cSBarry Smith 0, 2611cc2dc46cSBarry Smith 0, 2612cc2dc46cSBarry Smith 0, 2613cc2dc46cSBarry Smith 0, 2614f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2615cc2dc46cSBarry Smith 0, 2616cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 261782094794SBarry Smith MatPermute_MPIBAIJ, 2618cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2619d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2620f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2621f14a1c24SBarry Smith MatView_MPIBAIJ, 2622357abbc8SBarry Smith 0, 26237843d17aSBarry Smith 0, 2624d519adbfSMatthew Knepley /*64*/ 0, 26257843d17aSBarry Smith 0, 26267843d17aSBarry Smith 0, 26277843d17aSBarry Smith 0, 26287843d17aSBarry Smith 0, 2629d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26307843d17aSBarry Smith 0, 263197304618SKris Buschelman 0, 263297304618SKris Buschelman 0, 263397304618SKris Buschelman 0, 2634d519adbfSMatthew Knepley /*74*/ 0, 2635f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 263697304618SKris Buschelman 0, 263797304618SKris Buschelman 0, 263897304618SKris Buschelman 0, 2639d519adbfSMatthew Knepley /*79*/ 0, 264097304618SKris Buschelman 0, 264197304618SKris Buschelman 0, 264297304618SKris Buschelman 0, 2643865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2644d519adbfSMatthew Knepley /*84*/ 0, 2645865e5f61SKris Buschelman 0, 2646865e5f61SKris Buschelman 0, 2647865e5f61SKris Buschelman 0, 2648865e5f61SKris Buschelman 0, 2649d519adbfSMatthew Knepley /*89*/ 0, 2650865e5f61SKris Buschelman 0, 2651865e5f61SKris Buschelman 0, 2652865e5f61SKris Buschelman 0, 2653865e5f61SKris Buschelman 0, 2654d519adbfSMatthew Knepley /*94*/ 0, 2655865e5f61SKris Buschelman 0, 2656865e5f61SKris Buschelman 0, 265799cafbc1SBarry Smith 0, 265899cafbc1SBarry Smith 0, 2659d519adbfSMatthew Knepley /*99*/ 0, 266099cafbc1SBarry Smith 0, 266199cafbc1SBarry Smith 0, 266299cafbc1SBarry Smith 0, 266399cafbc1SBarry Smith 0, 2664d519adbfSMatthew Knepley /*104*/0, 266599cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26668c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26678c7482ecSBarry Smith 0, 26688c7482ecSBarry Smith 0, 2669d519adbfSMatthew Knepley /*109*/0, 26708c7482ecSBarry Smith 0, 26718c7482ecSBarry Smith 0, 26728c7482ecSBarry Smith 0, 26738c7482ecSBarry Smith 0, 2674f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26758c7482ecSBarry Smith 0, 26768c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 26778c7482ecSBarry Smith }; 267879bdfe76SSatish Balay 2679e18c124aSSatish Balay EXTERN_C_BEGIN 26804a2ae208SSatish Balay #undef __FUNCT__ 26814a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2682be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26835ef9f2a5SBarry Smith { 26845ef9f2a5SBarry Smith PetscFunctionBegin; 26855ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26865ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26875ef9f2a5SBarry Smith PetscFunctionReturn(0); 26885ef9f2a5SBarry Smith } 2689e18c124aSSatish Balay EXTERN_C_END 269079bdfe76SSatish Balay 2691273d9f13SBarry Smith EXTERN_C_BEGIN 2692f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2693d94109b8SHong Zhang EXTERN_C_END 2694d94109b8SHong Zhang 2695b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2696aac34f13SBarry Smith #undef __FUNCT__ 2697aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2698cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2699aac34f13SBarry Smith { 2700b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2701b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2702b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2703b8d659d7SLisandro Dalcin PetscScalar *values=0; 2704aac34f13SBarry Smith PetscErrorCode ierr; 2705aac34f13SBarry Smith 2706aac34f13SBarry Smith PetscFunctionBegin; 2707b8d659d7SLisandro Dalcin 2708b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 270926283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 271026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 271126283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 271226283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2713d0f46423SBarry Smith m = B->rmap->n/bs; 2714d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2715d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2716d0f46423SBarry Smith cend = B->cmap->rend/bs; 2717b8d659d7SLisandro Dalcin 2718cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2719fca92195SBarry Smith ierr = PetscMalloc2(m,PetscInt,&d_nnz,m,PetscInt,&o_nnz);CHKERRQ(ierr); 2720aac34f13SBarry Smith for (i=0; i<m; i++) { 2721cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2722b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2723b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2724cf12db73SBarry Smith JJ = jj + ii[i]; 2725b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2726aac34f13SBarry Smith if (*JJ >= cstart) break; 2727aac34f13SBarry Smith JJ++; 2728aac34f13SBarry Smith } 2729aac34f13SBarry Smith d = 0; 2730b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2731aac34f13SBarry Smith if (*JJ++ >= cend) break; 2732aac34f13SBarry Smith d++; 2733aac34f13SBarry Smith } 2734aac34f13SBarry Smith d_nnz[i] = d; 2735b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2736aac34f13SBarry Smith } 2737aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2738fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2739aac34f13SBarry Smith 2740b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2741b8d659d7SLisandro Dalcin if (!values) { 2742fca92195SBarry Smith ierr = PetscMalloc(bs*bs*nz_max*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2743b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2744b8d659d7SLisandro Dalcin } 2745b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2746b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2747cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2748cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2749cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2750b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2751aac34f13SBarry Smith } 2752aac34f13SBarry Smith 2753b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2754aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2755aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2756aac34f13SBarry Smith 2757aac34f13SBarry Smith PetscFunctionReturn(0); 2758aac34f13SBarry Smith } 2759b8d659d7SLisandro Dalcin EXTERN_C_END 2760aac34f13SBarry Smith 2761aac34f13SBarry Smith #undef __FUNCT__ 2762aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2763aac34f13SBarry Smith /*@C 2764aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2765aac34f13SBarry Smith (the default parallel PETSc format). 2766aac34f13SBarry Smith 2767aac34f13SBarry Smith Collective on MPI_Comm 2768aac34f13SBarry Smith 2769aac34f13SBarry Smith Input Parameters: 2770aac34f13SBarry Smith + A - the matrix 2771aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2772aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2773aac34f13SBarry Smith - v - optional values in the matrix 2774aac34f13SBarry Smith 2775aac34f13SBarry Smith Level: developer 2776aac34f13SBarry Smith 2777aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2778aac34f13SBarry Smith 2779aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2780aac34f13SBarry Smith @*/ 2781be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2782aac34f13SBarry Smith { 2783aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2784aac34f13SBarry Smith 2785aac34f13SBarry Smith PetscFunctionBegin; 2786aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2787aac34f13SBarry Smith if (f) { 2788aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2789aac34f13SBarry Smith } 2790aac34f13SBarry Smith PetscFunctionReturn(0); 2791aac34f13SBarry Smith } 2792aac34f13SBarry Smith 2793d94109b8SHong Zhang EXTERN_C_BEGIN 27944a2ae208SSatish Balay #undef __FUNCT__ 2795a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2796be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2797a23d5eceSKris Buschelman { 2798a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2799dfbe8321SBarry Smith PetscErrorCode ierr; 2800db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2801a23d5eceSKris Buschelman 2802a23d5eceSKris Buschelman PetscFunctionBegin; 2803db4efbfdSBarry Smith if (bs < 0) { 28047adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2805db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 28068c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2807db4efbfdSBarry Smith bs = PetscAbs(bs); 2808db4efbfdSBarry Smith } 2809db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2810db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2811db4efbfdSBarry Smith } 2812db4efbfdSBarry Smith bs = newbs; 2813db4efbfdSBarry Smith 2814a23d5eceSKris Buschelman 2815a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2816a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2817a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 281877431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 281977431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2820899cda47SBarry Smith 282126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 282226283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 282326283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 282426283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2825899cda47SBarry Smith 2826a23d5eceSKris Buschelman if (d_nnz) { 2827d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 282877431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2829a23d5eceSKris Buschelman } 2830a23d5eceSKris Buschelman } 2831a23d5eceSKris Buschelman if (o_nnz) { 2832d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 283377431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2834a23d5eceSKris Buschelman } 2835a23d5eceSKris Buschelman } 2836a23d5eceSKris Buschelman 2837a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2838a23d5eceSKris Buschelman b->bs2 = bs*bs; 2839d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2840d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2841d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2842d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2843a23d5eceSKris Buschelman 2844a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2845d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2846a23d5eceSKris Buschelman } 2847d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2848d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2849d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2850d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2851a23d5eceSKris Buschelman 2852526dfc15SBarry Smith if (!B->preallocated) { 2853f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2854d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28559c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 285652e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2857f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2858d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28599c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 286052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28617adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2862526dfc15SBarry Smith } 2863a23d5eceSKris Buschelman 2864526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2865526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2866526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2867a23d5eceSKris Buschelman PetscFunctionReturn(0); 2868a23d5eceSKris Buschelman } 2869a23d5eceSKris Buschelman EXTERN_C_END 2870a23d5eceSKris Buschelman 2871a23d5eceSKris Buschelman EXTERN_C_BEGIN 2872be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2873be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 287492b32695SKris Buschelman EXTERN_C_END 28755bf65638SKris Buschelman 287682094794SBarry Smith 287782094794SBarry Smith EXTERN_C_BEGIN 287882094794SBarry Smith #undef __FUNCT__ 287982094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 288082094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 288182094794SBarry Smith { 288282094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 288382094794SBarry Smith PetscErrorCode ierr; 288482094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 288582094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 288682094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 288782094794SBarry Smith 288882094794SBarry Smith PetscFunctionBegin; 288982094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 289082094794SBarry Smith ii[0] = 0; 289182094794SBarry Smith CHKMEMQ; 289282094794SBarry Smith for (i=0; i<M; i++) { 289382094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 289482094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 289582094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 289682094794SBarry Smith /* remove one from count of matrix has diagonal */ 289782094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 289882094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 289982094794SBarry Smith } 290082094794SBarry Smith CHKMEMQ; 290182094794SBarry Smith } 290282094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 290382094794SBarry Smith cnt = 0; 290482094794SBarry Smith for (i=0; i<M; i++) { 290582094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 290682094794SBarry Smith if (garray[jo[j]] > rstart) break; 290782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 290882094794SBarry Smith CHKMEMQ; 290982094794SBarry Smith } 291082094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 291182094794SBarry Smith if (jd[k] != i) { 291282094794SBarry Smith jj[cnt++] = rstart + jd[k]; 291382094794SBarry Smith CHKMEMQ; 291482094794SBarry Smith } 291582094794SBarry Smith } 291682094794SBarry Smith for (;j<io[i+1]; j++) { 291782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 291882094794SBarry Smith CHKMEMQ; 291982094794SBarry Smith } 292082094794SBarry Smith } 292182094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 292282094794SBarry Smith PetscFunctionReturn(0); 292382094794SBarry Smith } 2924dbf0e21dSBarry Smith EXTERN_C_END 292582094794SBarry Smith 29260bad9183SKris Buschelman /*MC 2927fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29280bad9183SKris Buschelman 29290bad9183SKris Buschelman Options Database Keys: 29308c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29318c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29328c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29330bad9183SKris Buschelman 29340bad9183SKris Buschelman Level: beginner 29350bad9183SKris Buschelman 29360bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29370bad9183SKris Buschelman M*/ 29380bad9183SKris Buschelman 293992b32695SKris Buschelman EXTERN_C_BEGIN 2940a23d5eceSKris Buschelman #undef __FUNCT__ 29414a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2942be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2943273d9f13SBarry Smith { 2944273d9f13SBarry Smith Mat_MPIBAIJ *b; 2945dfbe8321SBarry Smith PetscErrorCode ierr; 2946273d9f13SBarry Smith PetscTruth flg; 2947273d9f13SBarry Smith 2948273d9f13SBarry Smith PetscFunctionBegin; 294938f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 295082502324SSatish Balay B->data = (void*)b; 295182502324SSatish Balay 2952085a36d4SBarry Smith 2953273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2954273d9f13SBarry Smith B->mapping = 0; 2955273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2956273d9f13SBarry Smith 2957273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29587adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29597adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2960273d9f13SBarry Smith 2961273d9f13SBarry Smith /* build local table of row and column ownerships */ 2962899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2963273d9f13SBarry Smith 2964273d9f13SBarry Smith /* build cache for off array entries formed */ 29657adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2966273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2967273d9f13SBarry Smith b->colmap = PETSC_NULL; 2968273d9f13SBarry Smith b->garray = PETSC_NULL; 2969273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2970273d9f13SBarry Smith 2971273d9f13SBarry Smith /* stuff used in block assembly */ 2972273d9f13SBarry Smith b->barray = 0; 2973273d9f13SBarry Smith 2974273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2975273d9f13SBarry Smith b->lvec = 0; 2976273d9f13SBarry Smith b->Mvctx = 0; 2977273d9f13SBarry Smith 2978273d9f13SBarry Smith /* stuff for MatGetRow() */ 2979273d9f13SBarry Smith b->rowindices = 0; 2980273d9f13SBarry Smith b->rowvalues = 0; 2981273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2982273d9f13SBarry Smith 2983273d9f13SBarry Smith /* hash table stuff */ 2984273d9f13SBarry Smith b->ht = 0; 2985273d9f13SBarry Smith b->hd = 0; 2986273d9f13SBarry Smith b->ht_size = 0; 2987273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2988273d9f13SBarry Smith b->ht_fact = 0; 2989273d9f13SBarry Smith b->ht_total_ct = 0; 2990273d9f13SBarry Smith b->ht_insert_ct = 0; 2991273d9f13SBarry Smith 29927adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29938c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2994273d9f13SBarry Smith if (flg) { 2995f6275e2eSBarry Smith PetscReal fact = 1.39; 29964e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29978c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2998273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2999273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 30001e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3001273d9f13SBarry Smith } 30028c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 30038c07d4e3SBarry Smith 300482094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 300582094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 300682094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3007273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3008273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3009273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3010273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3011273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3012273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3013273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3014273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3015273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3016a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3017a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3018a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3019aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 302044ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3021aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 302292b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 302392b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 302492b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30255bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30265bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30275bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 302817667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3029273d9f13SBarry Smith PetscFunctionReturn(0); 3030273d9f13SBarry Smith } 3031273d9f13SBarry Smith EXTERN_C_END 3032273d9f13SBarry Smith 3033209238afSKris Buschelman /*MC 3034002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3035209238afSKris Buschelman 3036209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3037209238afSKris Buschelman and MATMPIBAIJ otherwise. 3038209238afSKris Buschelman 3039209238afSKris Buschelman Options Database Keys: 3040209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3041209238afSKris Buschelman 3042209238afSKris Buschelman Level: beginner 3043209238afSKris Buschelman 3044aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3045209238afSKris Buschelman M*/ 3046209238afSKris Buschelman 3047209238afSKris Buschelman EXTERN_C_BEGIN 3048209238afSKris Buschelman #undef __FUNCT__ 3049209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3050be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3051dfbe8321SBarry Smith { 30526849ba73SBarry Smith PetscErrorCode ierr; 3053b24ad042SBarry Smith PetscMPIInt size; 3054209238afSKris Buschelman 3055209238afSKris Buschelman PetscFunctionBegin; 30567adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3057209238afSKris Buschelman if (size == 1) { 3058209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3059209238afSKris Buschelman } else { 3060209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3061209238afSKris Buschelman } 3062209238afSKris Buschelman PetscFunctionReturn(0); 3063209238afSKris Buschelman } 3064209238afSKris Buschelman EXTERN_C_END 3065209238afSKris Buschelman 30664a2ae208SSatish Balay #undef __FUNCT__ 30674a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3068273d9f13SBarry Smith /*@C 3069aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3070273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3071273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3072273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3073273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3074273d9f13SBarry Smith 3075273d9f13SBarry Smith Collective on Mat 3076273d9f13SBarry Smith 3077273d9f13SBarry Smith Input Parameters: 3078273d9f13SBarry Smith + A - the matrix 3079273d9f13SBarry Smith . bs - size of blockk 3080273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3081273d9f13SBarry Smith submatrix (same for all local rows) 3082273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3083273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3084273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3085273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3086273d9f13SBarry Smith submatrix (same for all local rows). 3087273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3088273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3089273d9f13SBarry Smith each block row) or PETSC_NULL. 3090273d9f13SBarry Smith 309149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3092273d9f13SBarry Smith 3093273d9f13SBarry Smith Options Database Keys: 30948c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30958c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3096273d9f13SBarry Smith 3097273d9f13SBarry Smith Notes: 3098273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3099273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3100273d9f13SBarry Smith 3101273d9f13SBarry Smith Storage Information: 3102273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3103273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3104273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3105273d9f13SBarry Smith local matrix (a rectangular submatrix). 3106273d9f13SBarry Smith 3107273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3108273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3109273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3110273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3111273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3112273d9f13SBarry Smith 3113273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3114273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3115273d9f13SBarry Smith 3116273d9f13SBarry Smith .vb 3117273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3118273d9f13SBarry Smith ------------------- 3119273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3120273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3121273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3122273d9f13SBarry Smith ------------------- 3123273d9f13SBarry Smith .ve 3124273d9f13SBarry Smith 3125273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3126273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3127273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3128273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3129273d9f13SBarry Smith 3130273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3131273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3132273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3133273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3134273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3135273d9f13SBarry Smith matrices. 3136273d9f13SBarry Smith 3137aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3138aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3139aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3140aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3141aa95bbe8SBarry Smith 3142273d9f13SBarry Smith Level: intermediate 3143273d9f13SBarry Smith 3144273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3145273d9f13SBarry Smith 3146aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3147273d9f13SBarry Smith @*/ 3148be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3149273d9f13SBarry Smith { 3150b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3151273d9f13SBarry Smith 3152273d9f13SBarry Smith PetscFunctionBegin; 3153a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3154a23d5eceSKris Buschelman if (f) { 3155a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3156273d9f13SBarry Smith } 3157273d9f13SBarry Smith PetscFunctionReturn(0); 3158273d9f13SBarry Smith } 3159273d9f13SBarry Smith 31604a2ae208SSatish Balay #undef __FUNCT__ 31614a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 316279bdfe76SSatish Balay /*@C 316379bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 316479bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 316579bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 316679bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 316779bdfe76SSatish Balay performance can be increased by more than a factor of 50. 316879bdfe76SSatish Balay 3169db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3170db81eaa0SLois Curfman McInnes 317179bdfe76SSatish Balay Input Parameters: 3172db81eaa0SLois Curfman McInnes + comm - MPI communicator 317379bdfe76SSatish Balay . bs - size of blockk 317479bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 317592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 317692e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 317792e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 317892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 317992e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3180be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3181be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 318247a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 318379bdfe76SSatish Balay submatrix (same for all local rows) 318447a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 318592e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3186db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 318747a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 318879bdfe76SSatish Balay submatrix (same for all local rows). 318947a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 319092e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 319192e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 319279bdfe76SSatish Balay 319379bdfe76SSatish Balay Output Parameter: 319479bdfe76SSatish Balay . A - the matrix 319579bdfe76SSatish Balay 3196db81eaa0SLois Curfman McInnes Options Database Keys: 31978c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31988c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31993ffaccefSLois Curfman McInnes 3200175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3201ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3202175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3203175b88e8SBarry Smith 3204b259b22eSLois Curfman McInnes Notes: 320549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 320649a6f317SBarry Smith 320747a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 320847a75d0bSBarry Smith 320979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 321079bdfe76SSatish Balay (possibly both). 321179bdfe76SSatish Balay 3212be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3213be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3214be79a94dSBarry Smith 321579bdfe76SSatish Balay Storage Information: 321679bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 321779bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 321879bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 321979bdfe76SSatish Balay local matrix (a rectangular submatrix). 322079bdfe76SSatish Balay 322179bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 322279bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 322379bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 322479bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 322579bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 322679bdfe76SSatish Balay 322779bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 322879bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 322979bdfe76SSatish Balay 3230db81eaa0SLois Curfman McInnes .vb 3231db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3232db81eaa0SLois Curfman McInnes ------------------- 3233db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3234db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3235db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3236db81eaa0SLois Curfman McInnes ------------------- 3237db81eaa0SLois Curfman McInnes .ve 323879bdfe76SSatish Balay 323979bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 324079bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 324179bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 324257b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 324379bdfe76SSatish Balay 3244d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3245d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 324679bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 324792e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 324892e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32496da5968aSLois Curfman McInnes matrices. 325079bdfe76SSatish Balay 3251027ccd11SLois Curfman McInnes Level: intermediate 3252027ccd11SLois Curfman McInnes 325392e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 325479bdfe76SSatish Balay 3255aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 325679bdfe76SSatish Balay @*/ 3257be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 325879bdfe76SSatish Balay { 32596849ba73SBarry Smith PetscErrorCode ierr; 3260b24ad042SBarry Smith PetscMPIInt size; 326179bdfe76SSatish Balay 3262d64ed03dSBarry Smith PetscFunctionBegin; 3263f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3264f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3265d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3266273d9f13SBarry Smith if (size > 1) { 3267273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3268273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3269273d9f13SBarry Smith } else { 3270273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3271273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32723914022bSBarry Smith } 32733a40ed3dSBarry Smith PetscFunctionReturn(0); 327479bdfe76SSatish Balay } 3275026e39d0SSatish Balay 32764a2ae208SSatish Balay #undef __FUNCT__ 32774a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32786849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32790ac07820SSatish Balay { 32800ac07820SSatish Balay Mat mat; 32810ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3282dfbe8321SBarry Smith PetscErrorCode ierr; 3283b24ad042SBarry Smith PetscInt len=0; 32840ac07820SSatish Balay 3285d64ed03dSBarry Smith PetscFunctionBegin; 32860ac07820SSatish Balay *newmat = 0; 32877adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3288d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32897adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32901d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32917fff6886SHong Zhang 32924beb1cfeSHong Zhang mat->factor = matin->factor; 3293273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32940ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32957fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32967fff6886SHong Zhang 3297273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3298d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32990ac07820SSatish Balay a->bs2 = oldmat->bs2; 33000ac07820SSatish Balay a->mbs = oldmat->mbs; 33010ac07820SSatish Balay a->nbs = oldmat->nbs; 33020ac07820SSatish Balay a->Mbs = oldmat->Mbs; 33030ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33040ac07820SSatish Balay 330526283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 330626283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3307899cda47SBarry Smith 33080ac07820SSatish Balay a->size = oldmat->size; 33090ac07820SSatish Balay a->rank = oldmat->rank; 3310aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3311aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3312aef5e8e0SSatish Balay a->rowindices = 0; 33130ac07820SSatish Balay a->rowvalues = 0; 33140ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 331530793edcSSatish Balay a->barray = 0; 3316899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3317899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3318899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3319899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33200ac07820SSatish Balay 3321133cdb44SSatish Balay /* hash table stuff */ 3322133cdb44SSatish Balay a->ht = 0; 3323133cdb44SSatish Balay a->hd = 0; 3324133cdb44SSatish Balay a->ht_size = 0; 3325133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 332625fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3327133cdb44SSatish Balay a->ht_total_ct = 0; 3328133cdb44SSatish Balay a->ht_insert_ct = 0; 3329133cdb44SSatish Balay 3330899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33310ac07820SSatish Balay if (oldmat->colmap) { 3332aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33330f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 333448e59246SSatish Balay #else 3335b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 333652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3337b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 333848e59246SSatish Balay #endif 33390ac07820SSatish Balay } else a->colmap = 0; 33404beb1cfeSHong Zhang 33410ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3342b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 334352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3344b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33450ac07820SSatish Balay } else a->garray = 0; 33460ac07820SSatish Balay 3347533163c2SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33480ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 334952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33500ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 335152e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33527fff6886SHong Zhang 33532e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 335452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33552e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 335652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33577adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33580ac07820SSatish Balay *newmat = mat; 33594beb1cfeSHong Zhang 33603a40ed3dSBarry Smith PetscFunctionReturn(0); 33610ac07820SSatish Balay } 336257b952d6SSatish Balay 33634a2ae208SSatish Balay #undef __FUNCT__ 33644a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3365a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 336657b952d6SSatish Balay { 336757b952d6SSatish Balay Mat A; 33686849ba73SBarry Smith PetscErrorCode ierr; 3369b24ad042SBarry Smith int fd; 3370b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 337187828ca2SBarry Smith PetscScalar *vals,*buf; 337257b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 337357b952d6SSatish Balay MPI_Status status; 3374b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3375b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3376910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3377167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3378dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3379910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3380dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 338157b952d6SSatish Balay 3382d64ed03dSBarry Smith PetscFunctionBegin; 338377925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33848c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33858c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 338657b952d6SSatish Balay 3387d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3388d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 338957b952d6SSatish Balay if (!rank) { 3390b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3391e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3392552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33936c5fab8fSBarry Smith } 3394d64ed03dSBarry Smith 3395b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 339657b952d6SSatish Balay M = header[1]; N = header[2]; 339757b952d6SSatish Balay 339829bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 339957b952d6SSatish Balay 340057b952d6SSatish Balay /* 340157b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 340257b952d6SSatish Balay divisible by the blocksize 340357b952d6SSatish Balay */ 340457b952d6SSatish Balay Mbs = M/bs; 3405dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 340657b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 340757b952d6SSatish Balay else Mbs++; 340857b952d6SSatish Balay if (extra_rows && !rank) { 34091e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 341057b952d6SSatish Balay } 3411537820f0SBarry Smith 341257b952d6SSatish Balay /* determine ownership of all rows */ 341357b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 341457b952d6SSatish Balay m = mbs*bs; 3415dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3416b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3417167e7480SBarry Smith 3418167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3419167e7480SBarry Smith if (!rank) { 3420167e7480SBarry Smith mmax = rowners[1]; 3421167e7480SBarry Smith for (i=2; i<size; i++) { 3422167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3423167e7480SBarry Smith } 3424ca02efcfSSatish Balay mmax*=bs; 3425167e7480SBarry Smith } else mmax = m; 3426167e7480SBarry Smith 342757b952d6SSatish Balay rowners[0] = 0; 3428cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3429cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 343057b952d6SSatish Balay rstart = rowners[rank]; 343157b952d6SSatish Balay rend = rowners[rank+1]; 343257b952d6SSatish Balay 343357b952d6SSatish Balay /* distribute row lengths to all processors */ 343419c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 343557b952d6SSatish Balay if (!rank) { 3436dc231df0SBarry Smith mend = m; 3437dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3438dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3439dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3440dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3441b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3442b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3443dc231df0SBarry Smith for (j=0; j<m; j++) { 3444dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3445dc231df0SBarry Smith } 3446dc231df0SBarry Smith for (i=1; i<size; i++) { 3447dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3448dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3449dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3450dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3451dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3452dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 345357b952d6SSatish Balay procsnz[i] += rowlengths[j]; 345457b952d6SSatish Balay } 3455dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 345657b952d6SSatish Balay } 3457606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3458dc231df0SBarry Smith } else { 3459dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3460dc231df0SBarry Smith } 346157b952d6SSatish Balay 3462dc231df0SBarry Smith if (!rank) { 346357b952d6SSatish Balay /* determine max buffer needed and allocate it */ 34648a8e0b3aSBarry Smith maxnz = procsnz[0]; 3465cdc0ba36SBarry Smith for (i=1; i<size; i++) { 346657b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 346757b952d6SSatish Balay } 3468b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 346957b952d6SSatish Balay 347057b952d6SSatish Balay /* read in my part of the matrix column indices */ 347157b952d6SSatish Balay nz = procsnz[0]; 347219c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 347357b952d6SSatish Balay mycols = ibuf; 3474cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3475e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3476cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3477cee3aa6bSSatish Balay 347857b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 347957b952d6SSatish Balay for (i=1; i<size-1; i++) { 348057b952d6SSatish Balay nz = procsnz[i]; 3481e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3482b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 348357b952d6SSatish Balay } 348457b952d6SSatish Balay /* read in the stuff for the last proc */ 348557b952d6SSatish Balay if (size != 1) { 348657b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3487e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 348857b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3489b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 349057b952d6SSatish Balay } 3491606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3492d64ed03dSBarry Smith } else { 349357b952d6SSatish Balay /* determine buffer space needed for message */ 349457b952d6SSatish Balay nz = 0; 349557b952d6SSatish Balay for (i=0; i<m; i++) { 349657b952d6SSatish Balay nz += locrowlens[i]; 349757b952d6SSatish Balay } 349819c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 349957b952d6SSatish Balay mycols = ibuf; 350057b952d6SSatish Balay /* receive message of column indices*/ 3501b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3502b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 350329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 350457b952d6SSatish Balay } 350557b952d6SSatish Balay 350657b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3507dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3508dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3509dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3510dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3511dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 351257b952d6SSatish Balay rowcount = 0; nzcount = 0; 351357b952d6SSatish Balay for (i=0; i<mbs; i++) { 351457b952d6SSatish Balay dcount = 0; 351557b952d6SSatish Balay odcount = 0; 351657b952d6SSatish Balay for (j=0; j<bs; j++) { 351757b952d6SSatish Balay kmax = locrowlens[rowcount]; 351857b952d6SSatish Balay for (k=0; k<kmax; k++) { 351957b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 352057b952d6SSatish Balay if (!mask[tmp]) { 352157b952d6SSatish Balay mask[tmp] = 1; 352257b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 352357b952d6SSatish Balay else masked1[dcount++] = tmp; 352457b952d6SSatish Balay } 352557b952d6SSatish Balay } 352657b952d6SSatish Balay rowcount++; 352757b952d6SSatish Balay } 3528cee3aa6bSSatish Balay 352957b952d6SSatish Balay dlens[i] = dcount; 353057b952d6SSatish Balay odlens[i] = odcount; 3531cee3aa6bSSatish Balay 353257b952d6SSatish Balay /* zero out the mask elements we set */ 353357b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 353457b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 353557b952d6SSatish Balay } 3536cee3aa6bSSatish Balay 353757b952d6SSatish Balay /* create our matrix */ 3538f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3539f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 354078ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 354178ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 354278ae41b4SKris Buschelman 354357b952d6SSatish Balay if (!rank) { 354419c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 354557b952d6SSatish Balay /* read in my part of the matrix numerical values */ 354657b952d6SSatish Balay nz = procsnz[0]; 354757b952d6SSatish Balay vals = buf; 3548cee3aa6bSSatish Balay mycols = ibuf; 3549cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3550e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3551cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3552537820f0SBarry Smith 355357b952d6SSatish Balay /* insert into matrix */ 355457b952d6SSatish Balay jj = rstart*bs; 355557b952d6SSatish Balay for (i=0; i<m; i++) { 3556dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 355757b952d6SSatish Balay mycols += locrowlens[i]; 355857b952d6SSatish Balay vals += locrowlens[i]; 355957b952d6SSatish Balay jj++; 356057b952d6SSatish Balay } 356157b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 356257b952d6SSatish Balay for (i=1; i<size-1; i++) { 356357b952d6SSatish Balay nz = procsnz[i]; 356457b952d6SSatish Balay vals = buf; 3565e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35667adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 356757b952d6SSatish Balay } 356857b952d6SSatish Balay /* the last proc */ 356957b952d6SSatish Balay if (size != 1){ 357057b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3571cee3aa6bSSatish Balay vals = buf; 3572e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 357357b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35747adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 357557b952d6SSatish Balay } 3576606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3577d64ed03dSBarry Smith } else { 357857b952d6SSatish Balay /* receive numeric values */ 357919c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 358057b952d6SSatish Balay 358157b952d6SSatish Balay /* receive message of values*/ 358257b952d6SSatish Balay vals = buf; 3583cee3aa6bSSatish Balay mycols = ibuf; 35847adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3585ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 358629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 358757b952d6SSatish Balay 358857b952d6SSatish Balay /* insert into matrix */ 358957b952d6SSatish Balay jj = rstart*bs; 3590cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3591dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 359257b952d6SSatish Balay mycols += locrowlens[i]; 359357b952d6SSatish Balay vals += locrowlens[i]; 359457b952d6SSatish Balay jj++; 359557b952d6SSatish Balay } 359657b952d6SSatish Balay } 3597606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3598606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3599606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3600dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3601dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3602dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36036d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36046d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 360578ae41b4SKris Buschelman 360678ae41b4SKris Buschelman *newmat = A; 36073a40ed3dSBarry Smith PetscFunctionReturn(0); 360857b952d6SSatish Balay } 360957b952d6SSatish Balay 36104a2ae208SSatish Balay #undef __FUNCT__ 36114a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3612133cdb44SSatish Balay /*@ 3613133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3614133cdb44SSatish Balay 3615133cdb44SSatish Balay Input Parameters: 3616133cdb44SSatish Balay . mat - the matrix 3617133cdb44SSatish Balay . fact - factor 3618133cdb44SSatish Balay 3619fee21e36SBarry Smith Collective on Mat 3620fee21e36SBarry Smith 36218c890885SBarry Smith Level: advanced 36228c890885SBarry Smith 3623133cdb44SSatish Balay Notes: 36248c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3625133cdb44SSatish Balay 3626133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3627133cdb44SSatish Balay 3628133cdb44SSatish Balay .seealso: MatSetOption() 3629133cdb44SSatish Balay @*/ 3630be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3631133cdb44SSatish Balay { 3632dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36335bf65638SKris Buschelman 36345bf65638SKris Buschelman PetscFunctionBegin; 36355bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36365bf65638SKris Buschelman if (f) { 36375bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36385bf65638SKris Buschelman } 36395bf65638SKris Buschelman PetscFunctionReturn(0); 36405bf65638SKris Buschelman } 36415bf65638SKris Buschelman 3642be1d678aSKris Buschelman EXTERN_C_BEGIN 36435bf65638SKris Buschelman #undef __FUNCT__ 36445bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3645be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36465bf65638SKris Buschelman { 364725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3648133cdb44SSatish Balay 3649133cdb44SSatish Balay PetscFunctionBegin; 3650133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3651133cdb44SSatish Balay baij->ht_fact = fact; 3652133cdb44SSatish Balay PetscFunctionReturn(0); 3653133cdb44SSatish Balay } 3654be1d678aSKris Buschelman EXTERN_C_END 3655f2a5309cSSatish Balay 36564a2ae208SSatish Balay #undef __FUNCT__ 36574a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3658be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3659f2a5309cSSatish Balay { 3660f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3661f2a5309cSSatish Balay PetscFunctionBegin; 3662f2a5309cSSatish Balay *Ad = a->A; 3663f2a5309cSSatish Balay *Ao = a->B; 3664195d93cdSBarry Smith *colmap = a->garray; 3665f2a5309cSSatish Balay PetscFunctionReturn(0); 3666f2a5309cSSatish Balay } 366785535b8eSBarry Smith 366885535b8eSBarry Smith /* 366985535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 367085535b8eSBarry Smith */ 367185535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 367285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 367385535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 367485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 367585535b8eSBarry Smith #endif 367685535b8eSBarry Smith 367785535b8eSBarry Smith #undef __FUNCT__ 367885535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 367985535b8eSBarry Smith /*@C 368085535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 368185535b8eSBarry Smith 368285535b8eSBarry Smith Collective on Mat 368385535b8eSBarry Smith 368485535b8eSBarry Smith Input Parameters: 368585535b8eSBarry Smith + mat - the matrix 368685535b8eSBarry Smith . min - number of input rows 368785535b8eSBarry Smith . im - input rows 368885535b8eSBarry Smith . nin - number of input columns 368985535b8eSBarry Smith . in - input columns 369085535b8eSBarry Smith . v - numerical values input 369185535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 369285535b8eSBarry Smith 369385535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 369485535b8eSBarry Smith 369585535b8eSBarry Smith Level: advanced 369685535b8eSBarry Smith 369785535b8eSBarry Smith .seealso: MatSetValuesBlocked() 369885535b8eSBarry Smith @*/ 369985535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 370085535b8eSBarry Smith { 370185535b8eSBarry Smith /* convert input arguments to C version */ 370285535b8eSBarry Smith Mat mat = *matin; 370385535b8eSBarry Smith PetscInt m = *min, n = *nin; 370485535b8eSBarry Smith InsertMode addv = *addvin; 370585535b8eSBarry Smith 370685535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 370785535b8eSBarry Smith const MatScalar *value; 370885535b8eSBarry Smith MatScalar *barray=baij->barray; 370985535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 371085535b8eSBarry Smith PetscErrorCode ierr; 371185535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 371285535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3713d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 371485535b8eSBarry Smith 371585535b8eSBarry Smith PetscFunctionBegin; 371685535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 371785535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 371885535b8eSBarry Smith mat->insertmode = addv; 371985535b8eSBarry Smith } 372085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 372185535b8eSBarry Smith else if (mat->insertmode != addv) { 372285535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 372385535b8eSBarry Smith } 372485535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 372585535b8eSBarry Smith #endif 372685535b8eSBarry Smith if (mat->assembled) { 372785535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 372885535b8eSBarry Smith mat->assembled = PETSC_FALSE; 372985535b8eSBarry Smith } 373085535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 373185535b8eSBarry Smith 373285535b8eSBarry Smith 373385535b8eSBarry Smith if(!barray) { 373485535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 373585535b8eSBarry Smith baij->barray = barray; 373685535b8eSBarry Smith } 373785535b8eSBarry Smith 373885535b8eSBarry Smith if (roworiented) { 373985535b8eSBarry Smith stepval = (n-1)*bs; 374085535b8eSBarry Smith } else { 374185535b8eSBarry Smith stepval = (m-1)*bs; 374285535b8eSBarry Smith } 374385535b8eSBarry Smith for (i=0; i<m; i++) { 374485535b8eSBarry Smith if (im[i] < 0) continue; 374585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 374685535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 374785535b8eSBarry Smith #endif 374885535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 374985535b8eSBarry Smith row = im[i] - rstart; 375085535b8eSBarry Smith for (j=0; j<n; j++) { 375185535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 375285535b8eSBarry Smith if ((roworiented) && (n == 1)) { 375385535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 375485535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 375585535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 375685535b8eSBarry Smith } else { /* Here a copy is required */ 375785535b8eSBarry Smith if (roworiented) { 375885535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 375985535b8eSBarry Smith } else { 376085535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 376185535b8eSBarry Smith } 376285535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 376385535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 376485535b8eSBarry Smith *barray++ = *value++; 376585535b8eSBarry Smith } 376685535b8eSBarry Smith } 376785535b8eSBarry Smith barray -=bs2; 376885535b8eSBarry Smith } 376985535b8eSBarry Smith 377085535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 377185535b8eSBarry Smith col = in[j] - cstart; 377297e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 377385535b8eSBarry Smith } 377485535b8eSBarry Smith else if (in[j] < 0) continue; 377585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 377685535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 377785535b8eSBarry Smith #endif 377885535b8eSBarry Smith else { 377985535b8eSBarry Smith if (mat->was_assembled) { 378085535b8eSBarry Smith if (!baij->colmap) { 378185535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 378285535b8eSBarry Smith } 378385535b8eSBarry Smith 378485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 378585535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 378685535b8eSBarry Smith { PetscInt data; 378785535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 378885535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 378985535b8eSBarry Smith } 379085535b8eSBarry Smith #else 379185535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 379285535b8eSBarry Smith #endif 379385535b8eSBarry Smith #endif 379485535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 379585535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 379685535b8eSBarry Smith col = (col - 1)/bs; 379785535b8eSBarry Smith #else 379885535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 379985535b8eSBarry Smith #endif 380085535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 380185535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 380285535b8eSBarry Smith col = in[j]; 380385535b8eSBarry Smith } 380485535b8eSBarry Smith } 380585535b8eSBarry Smith else col = in[j]; 380697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 380785535b8eSBarry Smith } 380885535b8eSBarry Smith } 380985535b8eSBarry Smith } else { 381085535b8eSBarry Smith if (!baij->donotstash) { 381185535b8eSBarry Smith if (roworiented) { 381285535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 381385535b8eSBarry Smith } else { 381485535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 381585535b8eSBarry Smith } 381685535b8eSBarry Smith } 381785535b8eSBarry Smith } 381885535b8eSBarry Smith } 381985535b8eSBarry Smith 382085535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 382185535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 382285535b8eSBarry Smith PetscFunctionReturn(0); 382385535b8eSBarry Smith } 3824