xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 17df9f7c95b0ef00153aa5f4903b08e2f3467d6b)
179bdfe76SSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
3c5d9258eSSatish Balay 
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
97ea3e4caSstefano_zampini #endif
107ea3e4caSstefano_zampini 
11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
127843d17aSBarry Smith {
137843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
14dfbe8321SBarry Smith   PetscErrorCode ierr;
15985db425SBarry Smith   PetscInt       i,*idxb = 0;
1687828ca2SBarry Smith   PetscScalar    *va,*vb;
177843d17aSBarry Smith   Vec            vtmp;
187843d17aSBarry Smith 
197843d17aSBarry Smith   PetscFunctionBegin;
20985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
211ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
22985db425SBarry Smith   if (idx) {
2326fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
2426fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2526fbe8dcSKarl Rupp     }
26985db425SBarry Smith   }
277843d17aSBarry Smith 
28d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
29785e854fSJed Brown   if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);}
30985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
311ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
327843d17aSBarry Smith 
33d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
3426fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
3526fbe8dcSKarl Rupp       va[i] = vb[i];
3626fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
3726fbe8dcSKarl Rupp     }
387843d17aSBarry Smith   }
397843d17aSBarry Smith 
401ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
411ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
42c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
436bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
447843d17aSBarry Smith   PetscFunctionReturn(0);
457843d17aSBarry Smith }
467843d17aSBarry Smith 
477087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
487fc3c18eSBarry Smith {
497fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
517fc3c18eSBarry Smith 
527fc3c18eSBarry Smith   PetscFunctionBegin;
537fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
547fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
557fc3c18eSBarry Smith   PetscFunctionReturn(0);
567fc3c18eSBarry Smith }
577fc3c18eSBarry Smith 
587087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
597fc3c18eSBarry Smith {
607fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
61dfbe8321SBarry Smith   PetscErrorCode ierr;
627fc3c18eSBarry Smith 
637fc3c18eSBarry Smith   PetscFunctionBegin;
647fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
657fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
667fc3c18eSBarry Smith   PetscFunctionReturn(0);
677fc3c18eSBarry Smith }
687fc3c18eSBarry Smith 
69537820f0SBarry Smith /*
70537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
72e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7357b952d6SSatish Balay    length of colmap equals the global matrix length.
7457b952d6SSatish Balay */
75ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
7657b952d6SSatish Balay {
7757b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
7857b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
796849ba73SBarry Smith   PetscErrorCode ierr;
80d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8157b952d6SSatish Balay 
82d64ed03dSBarry Smith   PetscFunctionBegin;
83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
84e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
8548e59246SSatish Balay   for (i=0; i<nbs; i++) {
863861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
8748e59246SSatish Balay   }
8848e59246SSatish Balay #else
89854ce69bSBarry Smith   ierr = PetscMalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
903bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
91b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
92928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9348e59246SSatish Balay #endif
943a40ed3dSBarry Smith   PetscFunctionReturn(0);
9557b952d6SSatish Balay }
9657b952d6SSatish Balay 
97d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol)       \
9880c1aa95SSatish Balay   { \
9980c1aa95SSatish Balay  \
10080c1aa95SSatish Balay     brow = row/bs;  \
10180c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
102ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10380c1aa95SSatish Balay     bcol = col/bs; \
10480c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
105ab26458aSBarry Smith     low  = 0; high = nrow; \
106ab26458aSBarry Smith     while (high-low > 3) { \
107ab26458aSBarry Smith       t = (low+high)/2; \
108ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
109ab26458aSBarry Smith       else              low  = t; \
110ab26458aSBarry Smith     } \
111ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11280c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11380c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11480c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
115eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
116eada6651SSatish Balay         else                    *bap  = value;  \
117ac7a638eSSatish Balay         goto a_noinsert; \
11880c1aa95SSatish Balay       } \
11980c1aa95SSatish Balay     } \
12089280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
121d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
122fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12380c1aa95SSatish Balay     N = nrow++ - 1;  \
12480c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
12580c1aa95SSatish Balay     for (ii=N; ii>=_i; ii--) { \
12680c1aa95SSatish Balay       rp[ii+1] = rp[ii]; \
1273eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
12880c1aa95SSatish Balay     } \
1293eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
13080c1aa95SSatish Balay     rp[_i]                      = bcol;  \
13180c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
132ac7a638eSSatish Balay a_noinsert:; \
13380c1aa95SSatish Balay     ailen[brow] = nrow; \
13480c1aa95SSatish Balay   }
13557b952d6SSatish Balay 
136d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol)       \
137ac7a638eSSatish Balay   { \
138ac7a638eSSatish Balay     brow = row/bs;  \
139ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
140ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
141ac7a638eSSatish Balay     bcol = col/bs; \
142ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
143ac7a638eSSatish Balay     low  = 0; high = nrow; \
144ac7a638eSSatish Balay     while (high-low > 3) { \
145ac7a638eSSatish Balay       t = (low+high)/2; \
146ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
147ac7a638eSSatish Balay       else              low  = t; \
148ac7a638eSSatish Balay     } \
149ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
150ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
151ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
152ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
153ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
154ac7a638eSSatish Balay         else                    *bap  = value;  \
155ac7a638eSSatish Balay         goto b_noinsert; \
156ac7a638eSSatish Balay       } \
157ac7a638eSSatish Balay     } \
15889280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
159d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column  (%D, %D) into matrix", orow, ocol); \
160fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
161ac7a638eSSatish Balay     N = nrow++ - 1;  \
162ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
163ac7a638eSSatish Balay     for (ii=N; ii>=_i; ii--) { \
164ac7a638eSSatish Balay       rp[ii+1] = rp[ii]; \
1653eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
166ac7a638eSSatish Balay     } \
1673eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
168ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
169ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
170ac7a638eSSatish Balay b_noinsert:; \
171ac7a638eSSatish Balay     bilen[brow] = nrow; \
172ac7a638eSSatish Balay   }
173ac7a638eSSatish Balay 
174b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
17557b952d6SSatish Balay {
17657b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
17793fea6afSBarry Smith   MatScalar      value;
178ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
179dfbe8321SBarry Smith   PetscErrorCode ierr;
180b24ad042SBarry Smith   PetscInt       i,j,row,col;
181d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
182d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
183d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
18457b952d6SSatish Balay 
185eada6651SSatish Balay   /* Some Variables required in the macro */
18680c1aa95SSatish Balay   Mat         A     = baij->A;
18780c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
188b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1893eda8832SBarry Smith   MatScalar   *aa   =a->a;
190ac7a638eSSatish Balay 
191ac7a638eSSatish Balay   Mat         B     = baij->B;
192ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
193b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
1943eda8832SBarry Smith   MatScalar   *ba   =b->a;
195ac7a638eSSatish Balay 
196b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
197b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
1983eda8832SBarry Smith   MatScalar *ap,*bap;
19980c1aa95SSatish Balay 
200d64ed03dSBarry Smith   PetscFunctionBegin;
20157b952d6SSatish Balay   for (i=0; i<m; i++) {
2025ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2032515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
204e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
205639f9d9dSBarry Smith #endif
20657b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
20757b952d6SSatish Balay       row = im[i] - rstart_orig;
20857b952d6SSatish Balay       for (j=0; j<n; j++) {
20957b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
21057b952d6SSatish Balay           col = in[j] - cstart_orig;
211db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
212db4deed7SKarl Rupp           else             value = v[i+j*m];
213d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
21480c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
21573959e64SBarry Smith         } else if (in[j] < 0) continue;
2162515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
217660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
218639f9d9dSBarry Smith #endif
21957b952d6SSatish Balay         else {
22057b952d6SSatish Balay           if (mat->was_assembled) {
221905e6a2fSBarry Smith             if (!baij->colmap) {
222ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
223905e6a2fSBarry Smith             }
224aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2250f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
226bba1ac68SSatish Balay             col  = col - 1;
22748e59246SSatish Balay #else
228bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
22948e59246SSatish Balay #endif
230c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
231ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2328295de27SSatish Balay               col  =  in[j];
2339bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2349bf004c3SSatish Balay               B    = baij->B;
2359bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2369bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2379bf004c3SSatish Balay               ba   =b->a;
238c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
239c9ef50b2SBarry Smith             else col += in[j]%bs;
2408295de27SSatish Balay           } else col = in[j];
241db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
242db4deed7SKarl Rupp           else             value = v[i+j*m];
243d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
24490da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
24557b952d6SSatish Balay         }
24657b952d6SSatish Balay       }
247d64ed03dSBarry Smith     } else {
2484cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
24990f02eecSBarry Smith       if (!baij->donotstash) {
2505080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
251ff2fd236SBarry Smith         if (roworiented) {
252b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
253ff2fd236SBarry Smith         } else {
254b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
25557b952d6SSatish Balay         }
25657b952d6SSatish Balay       }
25757b952d6SSatish Balay     }
25890f02eecSBarry Smith   }
2593a40ed3dSBarry Smith   PetscFunctionReturn(0);
26057b952d6SSatish Balay }
26157b952d6SSatish Balay 
2628ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
263880c6e6aSBarry Smith {
264880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
2658ab52850SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
266880c6e6aSBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
267880c6e6aSBarry Smith   PetscErrorCode    ierr;
2688ab52850SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
269880c6e6aSBarry Smith   PetscBool         roworiented=a->roworiented;
270880c6e6aSBarry Smith   const PetscScalar *value     = v;
271880c6e6aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
272880c6e6aSBarry Smith 
273880c6e6aSBarry Smith   PetscFunctionBegin;
274880c6e6aSBarry Smith   rp   = aj + ai[row];
275880c6e6aSBarry Smith   ap   = aa + bs2*ai[row];
276880c6e6aSBarry Smith   rmax = imax[row];
277880c6e6aSBarry Smith   nrow = ailen[row];
2788ab52850SBarry Smith   value = v;
2798ab52850SBarry Smith   low = 0;
2808ab52850SBarry Smith   high = nrow;
281880c6e6aSBarry Smith   while (high-low > 7) {
282880c6e6aSBarry Smith     t = (low+high)/2;
283880c6e6aSBarry Smith     if (rp[t] > col) high = t;
284880c6e6aSBarry Smith     else             low  = t;
285880c6e6aSBarry Smith   }
286880c6e6aSBarry Smith   for (i=low; i<high; i++) {
287880c6e6aSBarry Smith     if (rp[i] > col) break;
288880c6e6aSBarry Smith     if (rp[i] == col) {
289880c6e6aSBarry Smith       bap = ap +  bs2*i;
290880c6e6aSBarry Smith       if (roworiented) {
291880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2928ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
293880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
294880c6e6aSBarry Smith               bap[jj] += *value++;
295880c6e6aSBarry Smith             }
296880c6e6aSBarry Smith           }
297880c6e6aSBarry Smith         } else {
2988ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
299880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
300880c6e6aSBarry Smith               bap[jj] = *value++;
301880c6e6aSBarry Smith             }
302880c6e6aSBarry Smith           }
303880c6e6aSBarry Smith         }
304880c6e6aSBarry Smith       } else {
305880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3068ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
307880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
308880c6e6aSBarry Smith               bap[jj] += value[jj];
309880c6e6aSBarry Smith             }
310880c6e6aSBarry Smith             bap += bs;
311880c6e6aSBarry Smith           }
312880c6e6aSBarry Smith         } else {
3138ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
314880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
315880c6e6aSBarry Smith               bap[jj]  = value[jj];
316880c6e6aSBarry Smith             }
317880c6e6aSBarry Smith             bap += bs;
318880c6e6aSBarry Smith           }
319880c6e6aSBarry Smith         }
320880c6e6aSBarry Smith       }
321880c6e6aSBarry Smith       goto noinsert2;
322880c6e6aSBarry Smith     }
323880c6e6aSBarry Smith   }
324880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
325880c6e6aSBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
326880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
327880c6e6aSBarry Smith   N = nrow++ - 1; high++;
328880c6e6aSBarry Smith   /* shift up all the later entries in this row */
329880c6e6aSBarry Smith   for (ii=N; ii>=i; ii--) {
330880c6e6aSBarry Smith     rp[ii+1] = rp[ii];
331880c6e6aSBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
332880c6e6aSBarry Smith   }
333880c6e6aSBarry Smith   if (N >= i) {
334880c6e6aSBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
335880c6e6aSBarry Smith   }
336880c6e6aSBarry Smith   rp[i] = col;
337880c6e6aSBarry Smith   bap   = ap +  bs2*i;
338880c6e6aSBarry Smith   if (roworiented) {
3398ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
340880c6e6aSBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
341880c6e6aSBarry Smith         bap[jj] = *value++;
342880c6e6aSBarry Smith       }
343880c6e6aSBarry Smith     }
344880c6e6aSBarry Smith   } else {
3458ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
346880c6e6aSBarry Smith       for (jj=0; jj<bs; jj++) {
347880c6e6aSBarry Smith         *bap++ = *value++;
348880c6e6aSBarry Smith       }
349880c6e6aSBarry Smith     }
350880c6e6aSBarry Smith   }
351880c6e6aSBarry Smith   noinsert2:;
352880c6e6aSBarry Smith   ailen[row] = nrow;
353880c6e6aSBarry Smith   PetscFunctionReturn(0);
354880c6e6aSBarry Smith }
355880c6e6aSBarry Smith 
3568ab52850SBarry Smith /*
3578ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3588ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3598ab52850SBarry Smith */
36097e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
361ab26458aSBarry Smith {
362ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
363dd6ea824SBarry Smith   const PetscScalar *value;
364f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
365ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
366dfbe8321SBarry Smith   PetscErrorCode    ierr;
367899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
368899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
369d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
370ab26458aSBarry Smith 
371b16ae2b1SBarry Smith   PetscFunctionBegin;
37230793edcSSatish Balay   if (!barray) {
373785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
37482502324SSatish Balay     baij->barray = barray;
37530793edcSSatish Balay   }
37630793edcSSatish Balay 
37726fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
37826fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
37926fbe8dcSKarl Rupp 
380ab26458aSBarry Smith   for (i=0; i<m; i++) {
3815ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3822515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
383bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
384ab26458aSBarry Smith #endif
385ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
386ab26458aSBarry Smith       row = im[i] - rstart;
387ab26458aSBarry Smith       for (j=0; j<n; j++) {
38815b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
38915b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
390f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
39115b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
392f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
39315b57d14SSatish Balay         } else { /* Here a copy is required */
394ab26458aSBarry Smith           if (roworiented) {
39553ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
396ab26458aSBarry Smith           } else {
39753ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
398abef11f7SSatish Balay           }
39953ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
40026fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
40153ef36baSBarry Smith             barray += bs;
40247513183SBarry Smith           }
40330793edcSSatish Balay           barray -= bs2;
40415b57d14SSatish Balay         }
405abef11f7SSatish Balay 
406abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
407abef11f7SSatish Balay           col  = in[j] - cstart;
4088ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
40926fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4102515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
4118ab52850SBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
412ab26458aSBarry Smith #endif
413ab26458aSBarry Smith         else {
414ab26458aSBarry Smith           if (mat->was_assembled) {
415ab26458aSBarry Smith             if (!baij->colmap) {
416ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
417ab26458aSBarry Smith             }
418a5eb4965SSatish Balay 
4192515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
420aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
421b24ad042SBarry Smith             { PetscInt data;
4220f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
423e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
424fa46199cSSatish Balay             }
42548e59246SSatish Balay #else
426e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
427a5eb4965SSatish Balay #endif
42848e59246SSatish Balay #endif
429aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4300f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
431fa46199cSSatish Balay             col  = (col - 1)/bs;
43248e59246SSatish Balay #else
433a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
43448e59246SSatish Balay #endif
4350e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
436ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
437ab26458aSBarry Smith               col  =  in[j];
438bb003d0fSBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]);
439db4deed7SKarl Rupp           } else col = in[j];
4408ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
441ab26458aSBarry Smith         }
442ab26458aSBarry Smith       }
443d64ed03dSBarry Smith     } else {
444bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
445ab26458aSBarry Smith       if (!baij->donotstash) {
446ff2fd236SBarry Smith         if (roworiented) {
4476fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
448ff2fd236SBarry Smith         } else {
4496fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
450ff2fd236SBarry Smith         }
451abef11f7SSatish Balay       }
452ab26458aSBarry Smith     }
453ab26458aSBarry Smith   }
4543a40ed3dSBarry Smith   PetscFunctionReturn(0);
455ab26458aSBarry Smith }
4566fa18ffdSBarry Smith 
4570bdbc534SSatish Balay #define HASH_KEY 0.6180339887
458b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
459b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
460b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
46197e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4620bdbc534SSatish Balay {
4630bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
464ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
465dfbe8321SBarry Smith   PetscErrorCode ierr;
466b24ad042SBarry Smith   PetscInt       i,j,row,col;
467d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
468d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
469d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
470329f5518SBarry Smith   PetscReal      tmp;
4713eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
4722515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
473b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4744a15367fSSatish Balay #endif
4750bdbc534SSatish Balay 
4760bdbc534SSatish Balay   PetscFunctionBegin;
4770bdbc534SSatish Balay   for (i=0; i<m; i++) {
4782515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
479e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
480e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4810bdbc534SSatish Balay #endif
4820bdbc534SSatish Balay     row = im[i];
483c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4840bdbc534SSatish Balay       for (j=0; j<n; j++) {
4850bdbc534SSatish Balay         col = in[j];
486db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
487db4deed7SKarl Rupp         else             value = v[i+j*m];
488b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
489c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
490c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4910bdbc534SSatish Balay 
492c2760754SSatish Balay 
493c2760754SSatish Balay         idx = h1;
4942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
495187ce0cbSSatish Balay         insert_ct++;
496187ce0cbSSatish Balay         total_ct++;
497187ce0cbSSatish Balay         if (HT[idx] != key) {
498187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
499187ce0cbSSatish Balay           if (idx == size) {
500187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
501f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
502187ce0cbSSatish Balay           }
503187ce0cbSSatish Balay         }
504187ce0cbSSatish Balay #else
505c2760754SSatish Balay         if (HT[idx] != key) {
506c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
507c2760754SSatish Balay           if (idx == size) {
508c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
509f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
510c2760754SSatish Balay           }
511c2760754SSatish Balay         }
512187ce0cbSSatish Balay #endif
513c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
514c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
515c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5160bdbc534SSatish Balay       }
51726fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
518ff2fd236SBarry Smith       if (roworiented) {
519b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
520ff2fd236SBarry Smith       } else {
521b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
5220bdbc534SSatish Balay       }
5230bdbc534SSatish Balay     }
5240bdbc534SSatish Balay   }
5252515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
526abf3b562SBarry Smith   baij->ht_total_ct  += total_ct;
527abf3b562SBarry Smith   baij->ht_insert_ct += insert_ct;
528187ce0cbSSatish Balay #endif
5290bdbc534SSatish Balay   PetscFunctionReturn(0);
5300bdbc534SSatish Balay }
5310bdbc534SSatish Balay 
53297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
5330bdbc534SSatish Balay {
5340bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
535ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
536dfbe8321SBarry Smith   PetscErrorCode    ierr;
537b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
538899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
539d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
540b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
541329f5518SBarry Smith   PetscReal         tmp;
5423eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
543dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
5442515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
545b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5464a15367fSSatish Balay #endif
5470bdbc534SSatish Balay 
548d0a41580SSatish Balay   PetscFunctionBegin;
54926fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
55026fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
55126fbe8dcSKarl Rupp 
5520bdbc534SSatish Balay   for (i=0; i<m; i++) {
5532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
554e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
555e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
5560bdbc534SSatish Balay #endif
5570bdbc534SSatish Balay     row = im[i];
558ab715e2cSSatish Balay     v_t = v + i*nbs2;
559c2760754SSatish Balay     if (row >= rstart && row < rend) {
5600bdbc534SSatish Balay       for (j=0; j<n; j++) {
5610bdbc534SSatish Balay         col = in[j];
5620bdbc534SSatish Balay 
5630bdbc534SSatish Balay         /* Look up into the Hash Table */
564c2760754SSatish Balay         key = row*Nbs+col+1;
565c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5660bdbc534SSatish Balay 
567c2760754SSatish Balay         idx = h1;
5682515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
569187ce0cbSSatish Balay         total_ct++;
570187ce0cbSSatish Balay         insert_ct++;
571187ce0cbSSatish Balay         if (HT[idx] != key) {
572187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
573187ce0cbSSatish Balay           if (idx == size) {
574187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
575f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
576187ce0cbSSatish Balay           }
577187ce0cbSSatish Balay         }
578187ce0cbSSatish Balay #else
579c2760754SSatish Balay         if (HT[idx] != key) {
580c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
581c2760754SSatish Balay           if (idx == size) {
582c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
583f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
584c2760754SSatish Balay           }
585c2760754SSatish Balay         }
586187ce0cbSSatish Balay #endif
587c2760754SSatish Balay         baij_a = HD[idx];
5880bdbc534SSatish Balay         if (roworiented) {
589c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
590187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
591187ce0cbSSatish Balay           value = v_t;
592187ce0cbSSatish Balay           v_t  += bs;
593fef45726SSatish Balay           if (addv == ADD_VALUES) {
594c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
595c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
596fef45726SSatish Balay                 baij_a[jj] += *value++;
597b4cc0f5aSSatish Balay               }
598b4cc0f5aSSatish Balay             }
599fef45726SSatish Balay           } else {
600c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
601c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
602fef45726SSatish Balay                 baij_a[jj] = *value++;
603fef45726SSatish Balay               }
604fef45726SSatish Balay             }
605fef45726SSatish Balay           }
6060bdbc534SSatish Balay         } else {
6070bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
608fef45726SSatish Balay           if (addv == ADD_VALUES) {
609b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
6100bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
611fef45726SSatish Balay                 baij_a[jj] += *value++;
612fef45726SSatish Balay               }
613fef45726SSatish Balay             }
614fef45726SSatish Balay           } else {
615fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
616fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
617fef45726SSatish Balay                 baij_a[jj] = *value++;
618fef45726SSatish Balay               }
619b4cc0f5aSSatish Balay             }
6200bdbc534SSatish Balay           }
6210bdbc534SSatish Balay         }
6220bdbc534SSatish Balay       }
6230bdbc534SSatish Balay     } else {
6240bdbc534SSatish Balay       if (!baij->donotstash) {
6250bdbc534SSatish Balay         if (roworiented) {
6268798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6270bdbc534SSatish Balay         } else {
6288798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6290bdbc534SSatish Balay         }
6300bdbc534SSatish Balay       }
6310bdbc534SSatish Balay     }
6320bdbc534SSatish Balay   }
6332515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
634abf3b562SBarry Smith   baij->ht_total_ct  += total_ct;
635abf3b562SBarry Smith   baij->ht_insert_ct += insert_ct;
636187ce0cbSSatish Balay #endif
6370bdbc534SSatish Balay   PetscFunctionReturn(0);
6380bdbc534SSatish Balay }
639133cdb44SSatish Balay 
640b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
641d6de1c52SSatish Balay {
642d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6436849ba73SBarry Smith   PetscErrorCode ierr;
644d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
645d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
646d6de1c52SSatish Balay 
647133cdb44SSatish Balay   PetscFunctionBegin;
648d6de1c52SSatish Balay   for (i=0; i<m; i++) {
649e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
650e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
651d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
652d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
653d6de1c52SSatish Balay       for (j=0; j<n; j++) {
654e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
655e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
656d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
657d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
65898dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
659d64ed03dSBarry Smith         } else {
660905e6a2fSBarry Smith           if (!baij->colmap) {
661ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
662905e6a2fSBarry Smith           }
663aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6640f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
665fa46199cSSatish Balay           data--;
66648e59246SSatish Balay #else
66748e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
66848e59246SSatish Balay #endif
66948e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
670d9d09a02SSatish Balay           else {
67148e59246SSatish Balay             col  = data + idxn[j]%bs;
67298dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
673d6de1c52SSatish Balay           }
674d6de1c52SSatish Balay         }
675d6de1c52SSatish Balay       }
676f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
677d6de1c52SSatish Balay   }
6783a40ed3dSBarry Smith   PetscFunctionReturn(0);
679d6de1c52SSatish Balay }
680d6de1c52SSatish Balay 
681dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
682d6de1c52SSatish Balay {
683d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
684d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
685dfbe8321SBarry Smith   PetscErrorCode ierr;
686d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
687329f5518SBarry Smith   PetscReal      sum = 0.0;
6883eda8832SBarry Smith   MatScalar      *v;
689d6de1c52SSatish Balay 
690d64ed03dSBarry Smith   PetscFunctionBegin;
691d6de1c52SSatish Balay   if (baij->size == 1) {
692064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
693d6de1c52SSatish Balay   } else {
694d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
695d6de1c52SSatish Balay       v  = amat->a;
6968a62d963SHong Zhang       nz = amat->nz*bs2;
6978a62d963SHong Zhang       for (i=0; i<nz; i++) {
698329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
699d6de1c52SSatish Balay       }
700d6de1c52SSatish Balay       v  = bmat->a;
7018a62d963SHong Zhang       nz = bmat->nz*bs2;
7028a62d963SHong Zhang       for (i=0; i<nz; i++) {
703329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
704d6de1c52SSatish Balay       }
705b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7068f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7078a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7088a62d963SHong Zhang       PetscReal *tmp,*tmp2;
709899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
710dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr);
711d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
7128a62d963SHong Zhang       v    = amat->a; jj = amat->j;
7138a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7148a62d963SHong Zhang         for (j=0; j<bs; j++) {
7158a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7168a62d963SHong Zhang           for (row=0; row<bs; row++) {
7178a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7188a62d963SHong Zhang           }
7198a62d963SHong Zhang         }
7208a62d963SHong Zhang         jj++;
7218a62d963SHong Zhang       }
7228a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7238a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7248a62d963SHong Zhang         for (j=0; j<bs; j++) {
7258a62d963SHong Zhang           col = bs*garray[*jj] + j;
7268a62d963SHong Zhang           for (row=0; row<bs; row++) {
7278a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7288a62d963SHong Zhang           }
7298a62d963SHong Zhang         }
7308a62d963SHong Zhang         jj++;
7318a62d963SHong Zhang       }
732b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7338a62d963SHong Zhang       *nrm = 0.0;
734d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
7358a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7368a62d963SHong Zhang       }
737fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
7388a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
739577dd1f9SKris Buschelman       PetscReal *sums;
740785e854fSJed Brown       ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr);
7418a62d963SHong Zhang       sum  = 0.0;
7428a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
7438a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
7448a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
7458a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
7468a62d963SHong Zhang         for (i=0; i<nz; i++) {
7478a62d963SHong Zhang           for (col=0; col<bs; col++) {
7488a62d963SHong Zhang             for (row=0; row<bs; row++) {
7498a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7508a62d963SHong Zhang             }
7518a62d963SHong Zhang           }
7528a62d963SHong Zhang         }
7538a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
7548a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7558a62d963SHong Zhang         for (i=0; i<nz; i++) {
7568a62d963SHong Zhang           for (col=0; col<bs; col++) {
7578a62d963SHong Zhang             for (row=0; row<bs; row++) {
7588a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7598a62d963SHong Zhang             }
7608a62d963SHong Zhang           }
7618a62d963SHong Zhang         }
7628a62d963SHong Zhang         for (row=0; row<bs; row++) {
7638a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7648a62d963SHong Zhang         }
7658a62d963SHong Zhang       }
766b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
767577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
768ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
769d64ed03dSBarry Smith   }
7703a40ed3dSBarry Smith   PetscFunctionReturn(0);
771d6de1c52SSatish Balay }
77257b952d6SSatish Balay 
773fef45726SSatish Balay /*
774fef45726SSatish Balay   Creates the hash table, and sets the table
775fef45726SSatish Balay   This table is created only once.
776fef45726SSatish Balay   If new entried need to be added to the matrix
777fef45726SSatish Balay   then the hash table has to be destroyed and
778fef45726SSatish Balay   recreated.
779fef45726SSatish Balay */
780dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
781596b8d2eSBarry Smith {
782596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
783596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
784596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
785b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7866849ba73SBarry Smith   PetscErrorCode ierr;
787fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
788899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
789b24ad042SBarry Smith   PetscInt       *HT,key;
7903eda8832SBarry Smith   MatScalar      **HD;
791329f5518SBarry Smith   PetscReal      tmp;
7926cf91177SBarry Smith #if defined(PETSC_USE_INFO)
793b24ad042SBarry Smith   PetscInt ct=0,max=0;
7944a15367fSSatish Balay #endif
795fef45726SSatish Balay 
796d64ed03dSBarry Smith   PetscFunctionBegin;
797fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
798fef45726SSatish Balay 
799fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
800fca92195SBarry Smith   ht_size       = baij->ht_size;
8010bdbc534SSatish Balay 
802fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8031795a4d1SJed Brown   ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
804b9e4cc15SSatish Balay   HD   = baij->hd;
805a07cd24cSSatish Balay   HT   = baij->ht;
806b9e4cc15SSatish Balay 
807596b8d2eSBarry Smith   /* Loop Over A */
8080bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
809596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8100bdbc534SSatish Balay       row = i+rstart;
8110bdbc534SSatish Balay       col = aj[j]+cstart;
812596b8d2eSBarry Smith 
813187ce0cbSSatish Balay       key = row*Nbs + col + 1;
814fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
815fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
816fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
817fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
818fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
819596b8d2eSBarry Smith           break;
8206cf91177SBarry Smith #if defined(PETSC_USE_INFO)
821187ce0cbSSatish Balay         } else {
822187ce0cbSSatish Balay           ct++;
823187ce0cbSSatish Balay #endif
824596b8d2eSBarry Smith         }
825187ce0cbSSatish Balay       }
8266cf91177SBarry Smith #if defined(PETSC_USE_INFO)
827187ce0cbSSatish Balay       if (k> max) max = k;
828187ce0cbSSatish Balay #endif
829596b8d2eSBarry Smith     }
830596b8d2eSBarry Smith   }
831596b8d2eSBarry Smith   /* Loop Over B */
8320bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
833596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
8340bdbc534SSatish Balay       row = i+rstart;
8350bdbc534SSatish Balay       col = garray[bj[j]];
836187ce0cbSSatish Balay       key = row*Nbs + col + 1;
837fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
838fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
839fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
840fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
841fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
842596b8d2eSBarry Smith           break;
8436cf91177SBarry Smith #if defined(PETSC_USE_INFO)
844187ce0cbSSatish Balay         } else {
845187ce0cbSSatish Balay           ct++;
846187ce0cbSSatish Balay #endif
847596b8d2eSBarry Smith         }
848187ce0cbSSatish Balay       }
8496cf91177SBarry Smith #if defined(PETSC_USE_INFO)
850187ce0cbSSatish Balay       if (k> max) max = k;
851187ce0cbSSatish Balay #endif
852596b8d2eSBarry Smith     }
853596b8d2eSBarry Smith   }
854596b8d2eSBarry Smith 
855596b8d2eSBarry Smith   /* Print Summary */
8566cf91177SBarry Smith #if defined(PETSC_USE_INFO)
857fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
85826fbe8dcSKarl Rupp     if (HT[i]) j++;
859c38d4ed2SBarry Smith   }
8601e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
861187ce0cbSSatish Balay #endif
8623a40ed3dSBarry Smith   PetscFunctionReturn(0);
863596b8d2eSBarry Smith }
86457b952d6SSatish Balay 
865dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
866bbb85fb3SSatish Balay {
867bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
868dfbe8321SBarry Smith   PetscErrorCode ierr;
869b24ad042SBarry Smith   PetscInt       nstash,reallocs;
870bbb85fb3SSatish Balay 
871bbb85fb3SSatish Balay   PetscFunctionBegin;
87226fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
873bbb85fb3SSatish Balay 
874d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8751e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8768798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8771e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
87846680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8791e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
880bbb85fb3SSatish Balay   PetscFunctionReturn(0);
881bbb85fb3SSatish Balay }
882bbb85fb3SSatish Balay 
883dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
884bbb85fb3SSatish Balay {
885bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
88691c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
8876849ba73SBarry Smith   PetscErrorCode ierr;
888b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
889e44c0bd4SBarry Smith   PetscInt       *row,*col;
890ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8913eda8832SBarry Smith   MatScalar      *val;
892b24ad042SBarry Smith   PetscMPIInt    n;
893bbb85fb3SSatish Balay 
894bbb85fb3SSatish Balay   PetscFunctionBegin;
8955fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8964cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
897a2d1c673SSatish Balay     while (1) {
8988798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
899a2d1c673SSatish Balay       if (!flg) break;
900a2d1c673SSatish Balay 
901bbb85fb3SSatish Balay       for (i=0; i<n;) {
902bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
90326fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
90426fbe8dcSKarl Rupp           if (row[j] != rstart) break;
90526fbe8dcSKarl Rupp         }
906bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
907bbb85fb3SSatish Balay         else       ncols = n-i;
908bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9094b4eb8d3SJed Brown         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
910bbb85fb3SSatish Balay         i    = j;
911bbb85fb3SSatish Balay       }
912bbb85fb3SSatish Balay     }
9138798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
914a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
915a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
916a2d1c673SSatish Balay        restore the original flags */
917a2d1c673SSatish Balay     r1 = baij->roworiented;
918a2d1c673SSatish Balay     r2 = a->roworiented;
91991c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
92026fbe8dcSKarl Rupp 
9217c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
9227c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
92326fbe8dcSKarl Rupp 
92491c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
925a2d1c673SSatish Balay     while (1) {
9268798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
927a2d1c673SSatish Balay       if (!flg) break;
928a2d1c673SSatish Balay 
929a2d1c673SSatish Balay       for (i=0; i<n;) {
930a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
93126fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
93226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
93326fbe8dcSKarl Rupp         }
934a2d1c673SSatish Balay         if (j < n) ncols = j-i;
935a2d1c673SSatish Balay         else       ncols = n-i;
9364b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
937a2d1c673SSatish Balay         i    = j;
938a2d1c673SSatish Balay       }
939a2d1c673SSatish Balay     }
9408798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
94126fbe8dcSKarl Rupp 
942a2d1c673SSatish Balay     baij->roworiented = r1;
943a2d1c673SSatish Balay     a->roworiented    = r2;
94426fbe8dcSKarl Rupp 
94591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
946bbb85fb3SSatish Balay   }
947bbb85fb3SSatish Balay 
948bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
949bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
950bbb85fb3SSatish Balay 
951bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
952bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
953bbb85fb3SSatish Balay   /*
954bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
955bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
956bbb85fb3SSatish Balay   */
957bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
958b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
959bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
960ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
961bbb85fb3SSatish Balay     }
962bbb85fb3SSatish Balay   }
963bbb85fb3SSatish Balay 
964bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
965bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
966bbb85fb3SSatish Balay   }
967bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
968bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
969bbb85fb3SSatish Balay 
9706cf91177SBarry Smith #if defined(PETSC_USE_INFO)
971bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
972abf3b562SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
97326fbe8dcSKarl Rupp 
974bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
975bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
976bbb85fb3SSatish Balay   }
977bbb85fb3SSatish Balay #endif
978bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
979bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
98026fbe8dcSKarl Rupp 
981bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
982bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
983bbb85fb3SSatish Balay   }
984bbb85fb3SSatish Balay 
985fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
98626fbe8dcSKarl Rupp 
987606d414cSSatish Balay   baij->rowvalues = 0;
9884f9cfa9eSBarry Smith 
9894f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9904f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
991e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
992b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
993e56f5c9eSBarry Smith   }
994bbb85fb3SSatish Balay   PetscFunctionReturn(0);
995bbb85fb3SSatish Balay }
99657b952d6SSatish Balay 
9977da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9989804daf3SBarry Smith #include <petscdraw.h>
9996849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
100057b952d6SSatish Balay {
100157b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1002dfbe8321SBarry Smith   PetscErrorCode    ierr;
10037da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1004d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1005ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
1006b0a32e0cSBarry Smith   PetscViewer       sviewer;
1007f3ef73ceSBarry Smith   PetscViewerFormat format;
100857b952d6SSatish Balay 
1009d64ed03dSBarry Smith   PetscFunctionBegin;
1010251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1011251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
101232077d6dSBarry Smith   if (iascii) {
1013b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1014456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10154e220ebcSLois Curfman McInnes       MatInfo info;
1016ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1017d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
10181575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
101977431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
102016608c43SJed Brown                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
1021d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
1022e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1023d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
1024e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1025b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
10261575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
102707d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
102857b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
10293a40ed3dSBarry Smith       PetscFunctionReturn(0);
1030fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
103177431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
10323a40ed3dSBarry Smith       PetscFunctionReturn(0);
103304929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
103404929863SHong Zhang       PetscFunctionReturn(0);
103557b952d6SSatish Balay     }
103657b952d6SSatish Balay   }
103757b952d6SSatish Balay 
10380f5bd95cSBarry Smith   if (isdraw) {
1039b0a32e0cSBarry Smith     PetscDraw draw;
1040ace3abfcSBarry Smith     PetscBool isnull;
1041b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
104245f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
104345f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
104457b952d6SSatish Balay   }
104557b952d6SSatish Balay 
10467da1fb6eSBarry Smith   {
104757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
104857b952d6SSatish Balay     Mat         A;
104957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1050d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10513eda8832SBarry Smith     MatScalar   *a;
10523e219373SBarry Smith     const char  *matname;
105357b952d6SSatish Balay 
1054f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1055f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1056ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
105757b952d6SSatish Balay     if (!rank) {
1058f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1059d64ed03dSBarry Smith     } else {
1060f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
106157b952d6SSatish Balay     }
1062f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
10630298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
10642b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
10653bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
106657b952d6SSatish Balay 
106757b952d6SSatish Balay     /* copy over the A part */
106857b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
106957b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1070785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
107157b952d6SSatish Balay 
107257b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1073899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
107426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
107557b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1076899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
107757b952d6SSatish Balay         for (k=0; k<bs; k++) {
107897e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1079cee3aa6bSSatish Balay           col++; a += bs;
108057b952d6SSatish Balay         }
108157b952d6SSatish Balay       }
108257b952d6SSatish Balay     }
108357b952d6SSatish Balay     /* copy over the B part */
108457b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
108557b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
108657b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1087899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
108826fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
108957b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
109057b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
109157b952d6SSatish Balay         for (k=0; k<bs; k++) {
109297e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1093cee3aa6bSSatish Balay           col++; a += bs;
109457b952d6SSatish Balay         }
109557b952d6SSatish Balay       }
109657b952d6SSatish Balay     }
1097606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10986d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10996d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
110055843e3eSBarry Smith     /*
110155843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1102b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
110355843e3eSBarry Smith     */
11043f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
1105ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
11063e219373SBarry Smith     if (!rank) {
1107ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
11087da1fb6eSBarry Smith       ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
110957b952d6SSatish Balay     }
11103f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
11111575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
11126bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
111357b952d6SSatish Balay   }
11143a40ed3dSBarry Smith   PetscFunctionReturn(0);
111557b952d6SSatish Balay }
111657b952d6SSatish Balay 
1117660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1118660746e0SBarry Smith {
1119660746e0SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)mat->data;
1120660746e0SBarry Smith   Mat_SeqBAIJ    *A = (Mat_SeqBAIJ*)a->A->data;
1121660746e0SBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
1122660746e0SBarry Smith   PetscErrorCode ierr;
11235f48b12bSBarry Smith   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
1124e96a6426SSatish Balay   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
1125660746e0SBarry Smith   int            fd;
1126660746e0SBarry Smith   PetscScalar    *column_values;
1127660746e0SBarry Smith   FILE           *file;
1128660746e0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
1129638eb2ebSBarry Smith   PetscInt       message_count,flowcontrolcount;
1130660746e0SBarry Smith 
1131660746e0SBarry Smith   PetscFunctionBegin;
1132ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1133ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
1134660746e0SBarry Smith   nz   = bs2*(A->nz + B->nz);
1135660746e0SBarry Smith   rlen = mat->rmap->n;
11365872f025SBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1137660746e0SBarry Smith   if (!rank) {
1138660746e0SBarry Smith     header[0] = MAT_FILE_CLASSID;
1139660746e0SBarry Smith     header[1] = mat->rmap->N;
1140660746e0SBarry Smith     header[2] = mat->cmap->N;
114126fbe8dcSKarl Rupp 
1142ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1143660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1144660746e0SBarry Smith     /* get largest number of rows any processor has */
1145660746e0SBarry Smith     range = mat->rmap->range;
1146660746e0SBarry Smith     for (i=1; i<size; i++) {
1147660746e0SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
1148660746e0SBarry Smith     }
1149660746e0SBarry Smith   } else {
1150ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1151660746e0SBarry Smith   }
1152660746e0SBarry Smith 
1153854ce69bSBarry Smith   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
1154660746e0SBarry Smith   /* compute lengths of each row  */
1155660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1156660746e0SBarry Smith     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1157660746e0SBarry Smith   }
1158660746e0SBarry Smith   /* store the row lengths to the file */
1159638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1160660746e0SBarry Smith   if (!rank) {
1161660746e0SBarry Smith     MPI_Status status;
1162785e854fSJed Brown     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1163660746e0SBarry Smith     rlen = (range[1] - range[0])/bs;
1164660746e0SBarry Smith     for (i=0; i<rlen; i++) {
1165660746e0SBarry Smith       for (j=0; j<bs; j++) {
1166660746e0SBarry Smith         row_lens[i*bs+j] = bs*crow_lens[i];
1167660746e0SBarry Smith       }
1168660746e0SBarry Smith     }
1169660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1170660746e0SBarry Smith     for (i=1; i<size; i++) {
1171660746e0SBarry Smith       rlen = (range[i+1] - range[i])/bs;
1172639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1173ce94432eSBarry Smith       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1174660746e0SBarry Smith       for (k=0; k<rlen; k++) {
1175660746e0SBarry Smith         for (j=0; j<bs; j++) {
1176660746e0SBarry Smith           row_lens[k*bs+j] = bs*crow_lens[k];
1177660746e0SBarry Smith         }
1178660746e0SBarry Smith       }
1179660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1180660746e0SBarry Smith     }
1181639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1182660746e0SBarry Smith     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1183660746e0SBarry Smith   } else {
1184639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1185ce94432eSBarry Smith     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1186639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1187660746e0SBarry Smith   }
1188660746e0SBarry Smith   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1189660746e0SBarry Smith 
1190660746e0SBarry Smith   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1191660746e0SBarry Smith      information needed to make it for each row from a block row. This does require more communication but still not more than
1192660746e0SBarry Smith      the communication needed for the nonzero values  */
1193660746e0SBarry Smith   nzmax = nz; /*  space a largest processor needs */
1194ce94432eSBarry Smith   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1195785e854fSJed Brown   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1196660746e0SBarry Smith   cnt   = 0;
1197660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1198660746e0SBarry Smith     pcnt = cnt;
1199660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1200660746e0SBarry Smith       if ((col = garray[B->j[j]]) > cstart) break;
1201660746e0SBarry Smith       for (l=0; l<bs; l++) {
1202660746e0SBarry Smith         column_indices[cnt++] = bs*col+l;
1203660746e0SBarry Smith       }
1204660746e0SBarry Smith     }
1205660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1206660746e0SBarry Smith       for (l=0; l<bs; l++) {
1207660746e0SBarry Smith         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1208660746e0SBarry Smith       }
1209660746e0SBarry Smith     }
1210660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1211660746e0SBarry Smith       for (l=0; l<bs; l++) {
1212660746e0SBarry Smith         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1213660746e0SBarry Smith       }
1214660746e0SBarry Smith     }
1215660746e0SBarry Smith     len = cnt - pcnt;
1216660746e0SBarry Smith     for (k=1; k<bs; k++) {
1217660746e0SBarry Smith       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1218660746e0SBarry Smith       cnt += len;
1219660746e0SBarry Smith     }
1220660746e0SBarry Smith   }
1221660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1222660746e0SBarry Smith 
1223660746e0SBarry Smith   /* store the columns to the file */
1224638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1225660746e0SBarry Smith   if (!rank) {
1226660746e0SBarry Smith     MPI_Status status;
1227660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1228660746e0SBarry Smith     for (i=1; i<size; i++) {
1229639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1230ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1231ce94432eSBarry Smith       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1232660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1233660746e0SBarry Smith     }
1234639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1235660746e0SBarry Smith   } else {
1236639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1237ce94432eSBarry Smith     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1238ce94432eSBarry Smith     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1239639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1240660746e0SBarry Smith   }
1241660746e0SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1242660746e0SBarry Smith 
1243660746e0SBarry Smith   /* load up the numerical values */
1244785e854fSJed Brown   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1245660746e0SBarry Smith   cnt  = 0;
1246660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1247660746e0SBarry Smith     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1248660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1249660746e0SBarry Smith       if (garray[B->j[j]] > cstart) break;
1250660746e0SBarry Smith       for (l=0; l<bs; l++) {
1251660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1252660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1253660746e0SBarry Smith         }
1254660746e0SBarry Smith       }
1255660746e0SBarry Smith       cnt += bs;
1256660746e0SBarry Smith     }
1257660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1258660746e0SBarry Smith       for (l=0; l<bs; l++) {
1259660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1260660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1261660746e0SBarry Smith         }
1262660746e0SBarry Smith       }
1263660746e0SBarry Smith       cnt += bs;
1264660746e0SBarry Smith     }
1265660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1266660746e0SBarry Smith       for (l=0; l<bs; l++) {
1267660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1268660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1269660746e0SBarry Smith         }
1270660746e0SBarry Smith       }
1271660746e0SBarry Smith       cnt += bs;
1272660746e0SBarry Smith     }
1273660746e0SBarry Smith     cnt += (bs-1)*rlen;
1274660746e0SBarry Smith   }
1275660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1276660746e0SBarry Smith 
1277660746e0SBarry Smith   /* store the column values to the file */
1278638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1279660746e0SBarry Smith   if (!rank) {
1280660746e0SBarry Smith     MPI_Status status;
1281660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1282660746e0SBarry Smith     for (i=1; i<size; i++) {
1283639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1284ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1285ce94432eSBarry Smith       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1286660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1287660746e0SBarry Smith     }
1288639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1289660746e0SBarry Smith   } else {
1290639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1291ce94432eSBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1292ce94432eSBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1293639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1294660746e0SBarry Smith   }
1295660746e0SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
1296660746e0SBarry Smith 
1297660746e0SBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1298660746e0SBarry Smith   if (file) {
1299660746e0SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1300660746e0SBarry Smith   }
1301660746e0SBarry Smith   PetscFunctionReturn(0);
1302660746e0SBarry Smith }
1303660746e0SBarry Smith 
1304dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
130557b952d6SSatish Balay {
1306dfbe8321SBarry Smith   PetscErrorCode ierr;
1307ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
130857b952d6SSatish Balay 
1309d64ed03dSBarry Smith   PetscFunctionBegin;
1310251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1311251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1312251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1313251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1314660746e0SBarry Smith   if (iascii || isdraw || issocket) {
13157b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1316660746e0SBarry Smith   } else if (isbinary) {
1317660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
131857b952d6SSatish Balay   }
13193a40ed3dSBarry Smith   PetscFunctionReturn(0);
132057b952d6SSatish Balay }
132157b952d6SSatish Balay 
1322dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
132379bdfe76SSatish Balay {
132479bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1325dfbe8321SBarry Smith   PetscErrorCode ierr;
132679bdfe76SSatish Balay 
1327d64ed03dSBarry Smith   PetscFunctionBegin;
1328aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1329d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
133079bdfe76SSatish Balay #endif
13318798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
13328798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
13336bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
13346bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1335aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
13366bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
133748e59246SSatish Balay #else
133805b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
133948e59246SSatish Balay #endif
134005b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
13416bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
13426bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1343fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
134405b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1345fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1346899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1347bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1348901853e0SKris Buschelman 
1349dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1350bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1351bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1352bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1353bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1354bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1355bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1356bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1357bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
13587ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
13597ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL);CHKERRQ(ierr);
13607ea3e4caSstefano_zampini #endif
13613a40ed3dSBarry Smith   PetscFunctionReturn(0);
136279bdfe76SSatish Balay }
136379bdfe76SSatish Balay 
1364dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1365cee3aa6bSSatish Balay {
1366cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1367dfbe8321SBarry Smith   PetscErrorCode ierr;
1368b24ad042SBarry Smith   PetscInt       nt;
1369cee3aa6bSSatish Balay 
1370d64ed03dSBarry Smith   PetscFunctionBegin;
1371e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1372e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1373e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1374e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1375ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1376f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1377ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1378f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
13793a40ed3dSBarry Smith   PetscFunctionReturn(0);
1380cee3aa6bSSatish Balay }
1381cee3aa6bSSatish Balay 
1382dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1383cee3aa6bSSatish Balay {
1384cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1385dfbe8321SBarry Smith   PetscErrorCode ierr;
1386d64ed03dSBarry Smith 
1387d64ed03dSBarry Smith   PetscFunctionBegin;
1388ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1389f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1390ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1391f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
13923a40ed3dSBarry Smith   PetscFunctionReturn(0);
1393cee3aa6bSSatish Balay }
1394cee3aa6bSSatish Balay 
1395dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1396cee3aa6bSSatish Balay {
1397cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1398dfbe8321SBarry Smith   PetscErrorCode ierr;
1399ace3abfcSBarry Smith   PetscBool      merged;
1400cee3aa6bSSatish Balay 
1401d64ed03dSBarry Smith   PetscFunctionBegin;
1402a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1403cee3aa6bSSatish Balay   /* do nondiagonal part */
14047c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1405a5ff213dSBarry Smith   if (!merged) {
1406cee3aa6bSSatish Balay     /* send it on its way */
1407ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1408cee3aa6bSSatish Balay     /* do local part */
14097c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1410cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1411a5ff213dSBarry Smith     /* inserted in yy until the next line */
1412ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1413a5ff213dSBarry Smith   } else {
1414a5ff213dSBarry Smith     /* do local part */
1415a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1416a5ff213dSBarry Smith     /* send it on its way */
1417ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1418a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1419ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1420a5ff213dSBarry Smith   }
14213a40ed3dSBarry Smith   PetscFunctionReturn(0);
1422cee3aa6bSSatish Balay }
1423cee3aa6bSSatish Balay 
1424dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1425cee3aa6bSSatish Balay {
1426cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1427dfbe8321SBarry Smith   PetscErrorCode ierr;
1428cee3aa6bSSatish Balay 
1429d64ed03dSBarry Smith   PetscFunctionBegin;
1430cee3aa6bSSatish Balay   /* do nondiagonal part */
14317c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1432cee3aa6bSSatish Balay   /* send it on its way */
1433ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1434cee3aa6bSSatish Balay   /* do local part */
14357c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1436cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1437cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1438cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1439ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
14403a40ed3dSBarry Smith   PetscFunctionReturn(0);
1441cee3aa6bSSatish Balay }
1442cee3aa6bSSatish Balay 
1443cee3aa6bSSatish Balay /*
1444cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1445cee3aa6bSSatish Balay    diagonal block
1446cee3aa6bSSatish Balay */
1447dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1448cee3aa6bSSatish Balay {
1449cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1450dfbe8321SBarry Smith   PetscErrorCode ierr;
1451d64ed03dSBarry Smith 
1452d64ed03dSBarry Smith   PetscFunctionBegin;
1453e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
14543a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
14553a40ed3dSBarry Smith   PetscFunctionReturn(0);
1456cee3aa6bSSatish Balay }
1457cee3aa6bSSatish Balay 
1458f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1459cee3aa6bSSatish Balay {
1460cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1461dfbe8321SBarry Smith   PetscErrorCode ierr;
1462d64ed03dSBarry Smith 
1463d64ed03dSBarry Smith   PetscFunctionBegin;
1464f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1465f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
14663a40ed3dSBarry Smith   PetscFunctionReturn(0);
1467cee3aa6bSSatish Balay }
1468026e39d0SSatish Balay 
1469b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1470acdf5bf4SSatish Balay {
1471acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
147287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
14736849ba73SBarry Smith   PetscErrorCode ierr;
1474d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1475d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1476899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1477acdf5bf4SSatish Balay 
1478d64ed03dSBarry Smith   PetscFunctionBegin;
1479e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1480e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1481acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1482acdf5bf4SSatish Balay 
1483acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1484acdf5bf4SSatish Balay     /*
1485acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1486acdf5bf4SSatish Balay     */
1487acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1488b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1489bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1490acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
149126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1492acdf5bf4SSatish Balay     }
1493dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1494acdf5bf4SSatish Balay   }
1495d9d09a02SSatish Balay   lrow = row - brstart;
1496acdf5bf4SSatish Balay 
1497acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1498acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1499acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1500f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1501f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1502acdf5bf4SSatish Balay   nztot = nzA + nzB;
1503acdf5bf4SSatish Balay 
1504acdf5bf4SSatish Balay   cmap = mat->garray;
1505acdf5bf4SSatish Balay   if (v  || idx) {
1506acdf5bf4SSatish Balay     if (nztot) {
1507acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1508b24ad042SBarry Smith       PetscInt imark = -1;
1509acdf5bf4SSatish Balay       if (v) {
1510acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1511acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1512d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1513acdf5bf4SSatish Balay           else break;
1514acdf5bf4SSatish Balay         }
1515acdf5bf4SSatish Balay         imark = i;
1516acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1517acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1518acdf5bf4SSatish Balay       }
1519acdf5bf4SSatish Balay       if (idx) {
1520acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1521acdf5bf4SSatish Balay         if (imark > -1) {
1522acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1523bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1524acdf5bf4SSatish Balay           }
1525acdf5bf4SSatish Balay         } else {
1526acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
152726fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1528acdf5bf4SSatish Balay             else break;
1529acdf5bf4SSatish Balay           }
1530acdf5bf4SSatish Balay           imark = i;
1531acdf5bf4SSatish Balay         }
1532d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1533d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1534acdf5bf4SSatish Balay       }
1535d64ed03dSBarry Smith     } else {
1536d212a18eSSatish Balay       if (idx) *idx = 0;
1537d212a18eSSatish Balay       if (v)   *v   = 0;
1538d212a18eSSatish Balay     }
1539acdf5bf4SSatish Balay   }
1540acdf5bf4SSatish Balay   *nz  = nztot;
1541f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1542f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
15433a40ed3dSBarry Smith   PetscFunctionReturn(0);
1544acdf5bf4SSatish Balay }
1545acdf5bf4SSatish Balay 
1546b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1547acdf5bf4SSatish Balay {
1548acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1549d64ed03dSBarry Smith 
1550d64ed03dSBarry Smith   PetscFunctionBegin;
1551e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1552acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
15533a40ed3dSBarry Smith   PetscFunctionReturn(0);
1554acdf5bf4SSatish Balay }
1555acdf5bf4SSatish Balay 
1556dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
155758667388SSatish Balay {
155858667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1559dfbe8321SBarry Smith   PetscErrorCode ierr;
1560d64ed03dSBarry Smith 
1561d64ed03dSBarry Smith   PetscFunctionBegin;
156258667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
156358667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
15643a40ed3dSBarry Smith   PetscFunctionReturn(0);
156558667388SSatish Balay }
15660ac07820SSatish Balay 
1567dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
15680ac07820SSatish Balay {
15694e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
15704e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1571dfbe8321SBarry Smith   PetscErrorCode ierr;
1572329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
15730ac07820SSatish Balay 
1574d64ed03dSBarry Smith   PetscFunctionBegin;
1575d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
157626fbe8dcSKarl Rupp 
15774e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
157826fbe8dcSKarl Rupp 
15790e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1580de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
158126fbe8dcSKarl Rupp 
15824e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
158326fbe8dcSKarl Rupp 
15840e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1585de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
158626fbe8dcSKarl Rupp 
15870ac07820SSatish Balay   if (flag == MAT_LOCAL) {
15884e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
15894e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
15904e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
15914e220ebcSLois Curfman McInnes     info->memory       = isend[3];
15924e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
15930ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1594b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
159526fbe8dcSKarl Rupp 
15964e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
15974e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
15984e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
15994e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16004e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
16010ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1602b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
160326fbe8dcSKarl Rupp 
16044e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16054e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16064e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16074e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16084e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1609ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
16104e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16114e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16124e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16133a40ed3dSBarry Smith   PetscFunctionReturn(0);
16140ac07820SSatish Balay }
16150ac07820SSatish Balay 
1616ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
161758667388SSatish Balay {
161858667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1619dfbe8321SBarry Smith   PetscErrorCode ierr;
162058667388SSatish Balay 
1621d64ed03dSBarry Smith   PetscFunctionBegin;
162212c028f9SKris Buschelman   switch (op) {
1623512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
162412c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
162528b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1626a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
162712c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
162843674050SBarry Smith     MatCheckPreallocated(A,1);
16294e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16304e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
163112c028f9SKris Buschelman     break;
163212c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
163343674050SBarry Smith     MatCheckPreallocated(A,1);
16344e0d8c25SBarry Smith     a->roworiented = flg;
163526fbe8dcSKarl Rupp 
16364e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16374e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
163812c028f9SKris Buschelman     break;
16394e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1640290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
164112c028f9SKris Buschelman     break;
164212c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16434e0d8c25SBarry Smith     a->donotstash = flg;
164412c028f9SKris Buschelman     break;
164512c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
16464e0d8c25SBarry Smith     a->ht_flag = flg;
1647abf3b562SBarry Smith     a->ht_fact = 1.39;
164812c028f9SKris Buschelman     break;
164977e54ba9SKris Buschelman   case MAT_SYMMETRIC:
165077e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
16512188ac68SBarry Smith   case MAT_HERMITIAN:
1652c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
16532188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
165443674050SBarry Smith     MatCheckPreallocated(A,1);
16554e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
165677e54ba9SKris Buschelman     break;
165712c028f9SKris Buschelman   default:
1658ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1659d64ed03dSBarry Smith   }
16603a40ed3dSBarry Smith   PetscFunctionReturn(0);
166158667388SSatish Balay }
166258667388SSatish Balay 
1663fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
16640ac07820SSatish Balay {
16650ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
16660ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
16670ac07820SSatish Balay   Mat            B;
1668dfbe8321SBarry Smith   PetscErrorCode ierr;
1669d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1670d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
16713eda8832SBarry Smith   MatScalar      *a;
16720ac07820SSatish Balay 
1673d64ed03dSBarry Smith   PetscFunctionBegin;
1674cf37664fSBarry Smith   if (reuse == MAT_INPLACE_MATRIX && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1675cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
1676ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1677d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
16787adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
16792e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
16800298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1681fc4dec0aSBarry Smith   } else {
1682fc4dec0aSBarry Smith     B = *matout;
1683fc4dec0aSBarry Smith   }
16840ac07820SSatish Balay 
16850ac07820SSatish Balay   /* copy over the A part */
16860ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
16870ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1688785e854fSJed Brown   ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
16890ac07820SSatish Balay 
16900ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1691899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
169226fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
16930ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1694899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
16950ac07820SSatish Balay       for (k=0; k<bs; k++) {
169697e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
169726fbe8dcSKarl Rupp 
16980ac07820SSatish Balay         col++; a += bs;
16990ac07820SSatish Balay       }
17000ac07820SSatish Balay     }
17010ac07820SSatish Balay   }
17020ac07820SSatish Balay   /* copy over the B part */
17030ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
17040ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
17050ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1706899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
170726fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
17080ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
17090ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
17100ac07820SSatish Balay       for (k=0; k<bs; k++) {
171197e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
171226fbe8dcSKarl Rupp         col++;
171326fbe8dcSKarl Rupp         a += bs;
17140ac07820SSatish Balay       }
17150ac07820SSatish Balay     }
17160ac07820SSatish Balay   }
1717606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
17180ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17190ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17200ac07820SSatish Balay 
1721cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
172226fbe8dcSKarl Rupp   else {
172328be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
17240ac07820SSatish Balay   }
17253a40ed3dSBarry Smith   PetscFunctionReturn(0);
17260ac07820SSatish Balay }
17270e95ebc0SSatish Balay 
1728dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
17290e95ebc0SSatish Balay {
173036c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
173136c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1732dfbe8321SBarry Smith   PetscErrorCode ierr;
1733b24ad042SBarry Smith   PetscInt       s1,s2,s3;
17340e95ebc0SSatish Balay 
1735d64ed03dSBarry Smith   PetscFunctionBegin;
173636c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
173736c4a09eSSatish Balay   if (rr) {
173836c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1739e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
174036c4a09eSSatish Balay     /* Overlap communication with computation. */
1741ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
174236c4a09eSSatish Balay   }
17430e95ebc0SSatish Balay   if (ll) {
17440e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1745e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
17460298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
17470e95ebc0SSatish Balay   }
174836c4a09eSSatish Balay   /* scale  the diagonal block */
174936c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
175036c4a09eSSatish Balay 
175136c4a09eSSatish Balay   if (rr) {
175236c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1753ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
17540298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
175536c4a09eSSatish Balay   }
17563a40ed3dSBarry Smith   PetscFunctionReturn(0);
17570e95ebc0SSatish Balay }
17580e95ebc0SSatish Balay 
17592b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
17600ac07820SSatish Balay {
17610ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
176265a92638SMatthew G. Knepley   PetscInt      *lrows;
17636e520ac8SStefano Zampini   PetscInt       r, len;
17646849ba73SBarry Smith   PetscErrorCode ierr;
17650ac07820SSatish Balay 
1766d64ed03dSBarry Smith   PetscFunctionBegin;
17676e520ac8SStefano Zampini   /* get locally owned rows */
17686e520ac8SStefano Zampini   ierr = MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows);CHKERRQ(ierr);
176997b48c8fSBarry Smith   /* fix right hand side if needed */
177097b48c8fSBarry Smith   if (x && b) {
177165a92638SMatthew G. Knepley     const PetscScalar *xx;
177265a92638SMatthew G. Knepley     PetscScalar       *bb;
177365a92638SMatthew G. Knepley 
177497b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
177597b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
177665a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
177797b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
177897b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
177997b48c8fSBarry Smith   }
178097b48c8fSBarry Smith 
17810ac07820SSatish Balay   /* actually zap the local rows */
178272dacd9aSBarry Smith   /*
178372dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1784a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
178572dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
178672dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
178772dacd9aSBarry Smith 
178872dacd9aSBarry Smith   */
17899c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1790a34163a4SJed Brown   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
17919ae29715SStefano Zampini   if (A->congruentlayouts == -1) { /* first time we compare rows and cols layouts */
17929ae29715SStefano Zampini     PetscBool cong;
17939ae29715SStefano Zampini     ierr = PetscLayoutCompare(A->rmap,A->cmap,&cong);CHKERRQ(ierr);
17949ae29715SStefano Zampini     if (cong) A->congruentlayouts = 1;
17959ae29715SStefano Zampini     else      A->congruentlayouts = 0;
17969ae29715SStefano Zampini   }
17979ae29715SStefano Zampini   if ((diag != 0.0) && A->congruentlayouts) {
1798a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr);
1799f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
180065a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1801e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1802512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
180365a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
180465a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1805f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1806a07cd24cSSatish Balay     }
1807a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1808a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18099c957beeSSatish Balay   } else {
1810a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1811a07cd24cSSatish Balay   }
1812606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
18134f9cfa9eSBarry Smith 
18144f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
18154f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1816e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1817b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1818e56f5c9eSBarry Smith   }
18193a40ed3dSBarry Smith   PetscFunctionReturn(0);
18200ac07820SSatish Balay }
182172dacd9aSBarry Smith 
18226f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
18236f0a72daSMatthew G. Knepley {
18246f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
18256f0a72daSMatthew G. Knepley   PetscErrorCode    ierr;
18265ba17502SJed Brown   PetscMPIInt       n = A->rmap->n;
1827fbb64d0eSMatthew G. Knepley   PetscInt          i,j,k,r,p = 0,len = 0,row,col,count;
18286f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
18296f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
18306f0a72daSMatthew G. Knepley   PetscSF           sf;
18316f0a72daSMatthew G. Knepley   const PetscScalar *xx;
18326f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
18336f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
18346f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
18356f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
18366f0a72daSMatthew G. Knepley   PetscScalar       *aa;
18376f0a72daSMatthew G. Knepley 
18386f0a72daSMatthew G. Knepley   PetscFunctionBegin;
18396f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
18406f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
18416f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
18426f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);
18436f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
18446f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
18455ba17502SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
18465ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
18475ba17502SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
18485ba17502SJed Brown     }
18496f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
18506f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
18516f0a72daSMatthew G. Knepley   }
18526f0a72daSMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
18536f0a72daSMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
18546f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
18556f0a72daSMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
18566f0a72daSMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
18576f0a72daSMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
18586f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
18596f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
18606f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
18616f0a72daSMatthew G. Knepley   ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr);
18626f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
18632a7a6963SBarry Smith   ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr);
18646f0a72daSMatthew G. Knepley   ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr);
18656f0a72daSMatthew G. Knepley   ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr);
18666f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
18676f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr);
18686f0a72daSMatthew G. Knepley   ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18696f0a72daSMatthew G. Knepley   ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18706f0a72daSMatthew G. Knepley   ierr = VecDestroy(&xmask);CHKERRQ(ierr);
18716f0a72daSMatthew G. Knepley   if (x) {
18726f0a72daSMatthew G. Knepley     ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18736f0a72daSMatthew G. Knepley     ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18746f0a72daSMatthew G. Knepley     ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr);
18756f0a72daSMatthew G. Knepley     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
18766f0a72daSMatthew G. Knepley   }
18776f0a72daSMatthew G. Knepley   ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr);
18786f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
18796f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
18806f0a72daSMatthew G. Knepley     row   = lrows[i];
18816f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
18826f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
18836f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
18846f0a72daSMatthew G. Knepley       aa[0] = 0.0;
18856f0a72daSMatthew G. Knepley       aa   += bs;
18866f0a72daSMatthew G. Knepley     }
18876f0a72daSMatthew G. Knepley   }
18886f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
18896f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
18906f0a72daSMatthew G. Knepley     row = i/bs;
18916f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
18926f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
18936f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
18946f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
18956f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
189689ae1891SBarry Smith           if (x) bb[i] -= aa[0]*xx[col];
18976f0a72daSMatthew G. Knepley           aa[0] = 0.0;
18986f0a72daSMatthew G. Knepley         }
18996f0a72daSMatthew G. Knepley       }
19006f0a72daSMatthew G. Knepley     }
19016f0a72daSMatthew G. Knepley   }
19026f0a72daSMatthew G. Knepley   if (x) {
19036f0a72daSMatthew G. Knepley     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
19046f0a72daSMatthew G. Knepley     ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr);
19056f0a72daSMatthew G. Knepley   }
19066f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr);
19076f0a72daSMatthew G. Knepley   ierr = VecDestroy(&lmask);CHKERRQ(ierr);
19086f0a72daSMatthew G. Knepley   ierr = PetscFree(lrows);CHKERRQ(ierr);
19094f9cfa9eSBarry Smith 
19104f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
19114f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
19124f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1913b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
19144f9cfa9eSBarry Smith   }
19156f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
19166f0a72daSMatthew G. Knepley }
19176f0a72daSMatthew G. Knepley 
1918dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1919bb5a7306SBarry Smith {
1920bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1921dfbe8321SBarry Smith   PetscErrorCode ierr;
1922d64ed03dSBarry Smith 
1923d64ed03dSBarry Smith   PetscFunctionBegin;
1924bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
19253a40ed3dSBarry Smith   PetscFunctionReturn(0);
1926bb5a7306SBarry Smith }
1927bb5a7306SBarry Smith 
19286849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
19290ac07820SSatish Balay 
1930ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
19317fc3c18eSBarry Smith {
19327fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
19337fc3c18eSBarry Smith   Mat            a,b,c,d;
1934ace3abfcSBarry Smith   PetscBool      flg;
1935dfbe8321SBarry Smith   PetscErrorCode ierr;
19367fc3c18eSBarry Smith 
19377fc3c18eSBarry Smith   PetscFunctionBegin;
19387fc3c18eSBarry Smith   a = matA->A; b = matA->B;
19397fc3c18eSBarry Smith   c = matB->A; d = matB->B;
19407fc3c18eSBarry Smith 
19417fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1942abc0a331SBarry Smith   if (flg) {
19437fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
19447fc3c18eSBarry Smith   }
1945b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
19467fc3c18eSBarry Smith   PetscFunctionReturn(0);
19477fc3c18eSBarry Smith }
19487fc3c18eSBarry Smith 
19493c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
19503c896bc6SHong Zhang {
19513c896bc6SHong Zhang   PetscErrorCode ierr;
19523c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
19533c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
19543c896bc6SHong Zhang 
19553c896bc6SHong Zhang   PetscFunctionBegin;
19563c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
19573c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
19583c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
19593c896bc6SHong Zhang   } else {
19603c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
19613c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
19623c896bc6SHong Zhang   }
19633c896bc6SHong Zhang   PetscFunctionReturn(0);
19643c896bc6SHong Zhang }
1965273d9f13SBarry Smith 
19664994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1967273d9f13SBarry Smith {
1968dfbe8321SBarry Smith   PetscErrorCode ierr;
1969273d9f13SBarry Smith 
1970273d9f13SBarry Smith   PetscFunctionBegin;
1971535b19f3SBarry Smith   ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1972273d9f13SBarry Smith   PetscFunctionReturn(0);
1973273d9f13SBarry Smith }
1974273d9f13SBarry Smith 
19754de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
19764de5dceeSHong Zhang {
1977001ddc4fSHong Zhang   PetscErrorCode ierr;
1978001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
19794de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
19804de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
19814de5dceeSHong Zhang 
19824de5dceeSHong Zhang   PetscFunctionBegin;
1983001ddc4fSHong Zhang   ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr);
19844de5dceeSHong Zhang   PetscFunctionReturn(0);
19854de5dceeSHong Zhang }
19864de5dceeSHong Zhang 
19874fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
19884fe895cdSHong Zhang {
19894fe895cdSHong Zhang   PetscErrorCode ierr;
19904fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
19914fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
19924fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
19934fe895cdSHong Zhang 
19944fe895cdSHong Zhang   PetscFunctionBegin;
19954fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
19964fe895cdSHong Zhang     PetscScalar alpha = a;
19974fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
19984fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
1999c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
20008b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
20014fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
20024fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
2003c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
20048b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
2005a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
2006ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2007ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
20084fe895cdSHong Zhang   } else {
20094de5dceeSHong Zhang     Mat      B;
20104de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
20114de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
20124de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
20134de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
20144de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
20154de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
20164de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
20174de5dceeSHong Zhang     ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr);
20184de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
20194de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
20204de5dceeSHong Zhang     ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
20214de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
20224de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
202328be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
20244de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
20254de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
20264fe895cdSHong Zhang   }
20274fe895cdSHong Zhang   PetscFunctionReturn(0);
20284fe895cdSHong Zhang }
20294fe895cdSHong Zhang 
203099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
203199cafbc1SBarry Smith {
203299cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
203399cafbc1SBarry Smith   PetscErrorCode ierr;
203499cafbc1SBarry Smith 
203599cafbc1SBarry Smith   PetscFunctionBegin;
203699cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
203799cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
203899cafbc1SBarry Smith   PetscFunctionReturn(0);
203999cafbc1SBarry Smith }
204099cafbc1SBarry Smith 
204199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
204299cafbc1SBarry Smith {
204399cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
204499cafbc1SBarry Smith   PetscErrorCode ierr;
204599cafbc1SBarry Smith 
204699cafbc1SBarry Smith   PetscFunctionBegin;
204799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
204899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
204999cafbc1SBarry Smith   PetscFunctionReturn(0);
205099cafbc1SBarry Smith }
205199cafbc1SBarry Smith 
20524aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
20534aa3045dSJed Brown {
20544aa3045dSJed Brown   PetscErrorCode ierr;
20554aa3045dSJed Brown   IS             iscol_local;
20564aa3045dSJed Brown   PetscInt       csize;
20574aa3045dSJed Brown 
20584aa3045dSJed Brown   PetscFunctionBegin;
20594aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
2060b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
2061b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
2062e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
2063b79d0421SJed Brown   } else {
20644aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
2065b79d0421SJed Brown   }
20664aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
2067b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
2068b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
20696bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
2070b79d0421SJed Brown   }
20714aa3045dSJed Brown   PetscFunctionReturn(0);
20724aa3045dSJed Brown }
2073*17df9f7cSHong Zhang 
207429dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*);
2075*17df9f7cSHong Zhang extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local_new(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*);
207682094794SBarry Smith /*
207782094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
207882094794SBarry Smith   in local and then by concatenating the local matrices the end result.
20798f46ffcaSHong Zhang   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ().
20808f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
208182094794SBarry Smith */
20824aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
208382094794SBarry Smith {
208482094794SBarry Smith   PetscErrorCode ierr;
208582094794SBarry Smith   PetscMPIInt    rank,size;
208682094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
208729dcf524SDmitry Karpeev   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow;
208829dcf524SDmitry Karpeev   Mat            M,Mreuse;
208982094794SBarry Smith   MatScalar      *vwork,*aa;
2090ce94432eSBarry Smith   MPI_Comm       comm;
209129dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
209229dcf524SDmitry Karpeev   PetscBool      idflag,allrows, allcols;
209382094794SBarry Smith   Mat_SeqBAIJ    *aij;
209482094794SBarry Smith 
209582094794SBarry Smith   PetscFunctionBegin;
2096ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
209782094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
209882094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
209929dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
210029dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
210129dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
210229dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
210382094794SBarry Smith 
210429dcf524SDmitry Karpeev   /* Check for special case: each processor gets entire matrix columns */
210529dcf524SDmitry Karpeev   ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr);
210629dcf524SDmitry Karpeev   ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr);
210726fbe8dcSKarl Rupp   if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE;
210826fbe8dcSKarl Rupp   else allcols = PETSC_FALSE;
210929dcf524SDmitry Karpeev 
211029dcf524SDmitry Karpeev   ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr);
211129dcf524SDmitry Karpeev   ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr);
211226fbe8dcSKarl Rupp   if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE;
211326fbe8dcSKarl Rupp   else allrows = PETSC_FALSE;
211426fbe8dcSKarl Rupp 
211582094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
211682094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
2117e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
211875f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
211982094794SBarry Smith   } else {
212075f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
212182094794SBarry Smith   }
212229dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
212329dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
212482094794SBarry Smith   /*
212582094794SBarry Smith       m - number of local rows
212682094794SBarry Smith       n - number of columns (same on all processors)
212782094794SBarry Smith       rstart - first row in new global matrix generated
212882094794SBarry Smith   */
212982094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
213082094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
213182094794SBarry Smith   m    = m/bs;
213282094794SBarry Smith   n    = n/bs;
213382094794SBarry Smith 
213482094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
213582094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
213682094794SBarry Smith     ii  = aij->i;
213782094794SBarry Smith     jj  = aij->j;
213882094794SBarry Smith 
213982094794SBarry Smith     /*
214082094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
214182094794SBarry Smith         portions of the matrix in order to do correct preallocation
214282094794SBarry Smith     */
214382094794SBarry Smith 
214482094794SBarry Smith     /* first get start and end of "diagonal" columns */
214582094794SBarry Smith     if (csize == PETSC_DECIDE) {
214682094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
214782094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
214882094794SBarry Smith         nlocal = m;
214982094794SBarry Smith       } else {
215082094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
215182094794SBarry Smith       }
215282094794SBarry Smith     } else {
215382094794SBarry Smith       nlocal = csize/bs;
215482094794SBarry Smith     }
215582094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
215682094794SBarry Smith     rstart = rend - nlocal;
215765e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
215882094794SBarry Smith 
215982094794SBarry Smith     /* next, compute all the lengths */
2160dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
216182094794SBarry Smith     for (i=0; i<m; i++) {
216282094794SBarry Smith       jend = ii[i+1] - ii[i];
216382094794SBarry Smith       olen = 0;
216482094794SBarry Smith       dlen = 0;
216582094794SBarry Smith       for (j=0; j<jend; j++) {
216682094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
216782094794SBarry Smith         else dlen++;
216882094794SBarry Smith         jj++;
216982094794SBarry Smith       }
217082094794SBarry Smith       olens[i] = olen;
217182094794SBarry Smith       dlens[i] = dlen;
217282094794SBarry Smith     }
217382094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
217482094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
217582094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
217682094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
21778f46ffcaSHong Zhang     ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2178eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
217982094794SBarry Smith   } else {
218082094794SBarry Smith     PetscInt ml,nl;
218182094794SBarry Smith 
218282094794SBarry Smith     M    = *newmat;
218382094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2184e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
218582094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
218682094794SBarry Smith     /*
218782094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
218882094794SBarry Smith        rather than the slower MatSetValues().
218982094794SBarry Smith     */
219082094794SBarry Smith     M->was_assembled = PETSC_TRUE;
219182094794SBarry Smith     M->assembled     = PETSC_FALSE;
219282094794SBarry Smith   }
219382094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
219482094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
219582094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
219682094794SBarry Smith   ii   = aij->i;
219782094794SBarry Smith   jj   = aij->j;
219882094794SBarry Smith   aa   = aij->a;
219982094794SBarry Smith   for (i=0; i<m; i++) {
220082094794SBarry Smith     row   = rstart/bs + i;
220182094794SBarry Smith     nz    = ii[i+1] - ii[i];
220282094794SBarry Smith     cwork = jj;     jj += nz;
220375f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
220482094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
220582094794SBarry Smith   }
220682094794SBarry Smith 
220782094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
220882094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
220982094794SBarry Smith   *newmat = M;
221082094794SBarry Smith 
221182094794SBarry Smith   /* save submatrix used in processor for next request */
221282094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
221382094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
221482094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
221582094794SBarry Smith   }
221682094794SBarry Smith   PetscFunctionReturn(0);
221782094794SBarry Smith }
221882094794SBarry Smith 
221982094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
222082094794SBarry Smith {
222182094794SBarry Smith   MPI_Comm       comm,pcomm;
2222a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
222382094794SBarry Smith   const PetscInt *rows;
2224dbf0e21dSBarry Smith   PetscMPIInt    size;
2225a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
222682094794SBarry Smith   PetscErrorCode ierr;
222782094794SBarry Smith 
222882094794SBarry Smith   PetscFunctionBegin;
222982094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
223082094794SBarry Smith   /* make a collective version of 'rowp' */
223182094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
223282094794SBarry Smith   if (pcomm==comm) {
223382094794SBarry Smith     crowp = rowp;
223482094794SBarry Smith   } else {
223582094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
223682094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
223770b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
223882094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
223982094794SBarry Smith   }
2240a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2241a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
224282094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2243dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2244dbf0e21dSBarry Smith   if (size==1) {
224582094794SBarry Smith     lcolp = colp;
224682094794SBarry Smith   } else {
224775f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
224882094794SBarry Smith   }
2249dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
225075f6568bSJed Brown   /* now we just get the submatrix */
22517afc1a8bSJed Brown   ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr);
2252a0a83eb5SRémi Lacroix   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2253a0a83eb5SRémi Lacroix   /* clean up */
2254a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2255a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2256a0a83eb5SRémi Lacroix   }
2257dbf0e21dSBarry Smith   if (size>1) {
22586bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
225982094794SBarry Smith   }
226082094794SBarry Smith   PetscFunctionReturn(0);
226182094794SBarry Smith }
226282094794SBarry Smith 
22637087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
22648c7482ecSBarry Smith {
22658c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
22668c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
22678c7482ecSBarry Smith 
22688c7482ecSBarry Smith   PetscFunctionBegin;
226926fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
227026fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
22718c7482ecSBarry Smith   PetscFunctionReturn(0);
22728c7482ecSBarry Smith }
22738c7482ecSBarry Smith 
2274d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2275f6d58c54SBarry Smith {
2276f6d58c54SBarry Smith   Mat            B;
2277f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2278f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2279f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2280f6d58c54SBarry Smith   PetscErrorCode ierr;
2281f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2282f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2283f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2284f6d58c54SBarry Smith 
2285f6d58c54SBarry Smith   PetscFunctionBegin;
2286ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2287ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2288f6d58c54SBarry Smith 
2289f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2290f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2291f6d58c54SBarry Smith   */
2292854ce69bSBarry Smith   ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr);
2293f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2294f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2295f6d58c54SBarry Smith   }
2296785e854fSJed Brown   ierr      = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr);
2297f6d58c54SBarry Smith   displs    = recvcounts + size;
2298f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2299f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2300f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2301f6d58c54SBarry Smith   }
2302f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2303ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2304f6d58c54SBarry Smith #else
23053d3eaba7SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2306ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2307f6d58c54SBarry Smith #endif
2308f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2309f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2310f6d58c54SBarry Smith   */
2311f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2312f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2313f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2314f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2315f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2316f6d58c54SBarry Smith 
2317f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2318f6d58c54SBarry Smith     Copy my part of matrix column indices over
2319f6d58c54SBarry Smith   */
2320f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2321f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2322f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2323f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2324f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2325f6d58c54SBarry Smith   cnt        = 0;
2326f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2327f6d58c54SBarry Smith 
2328f6d58c54SBarry Smith     /* put in lower diagonal portion */
2329f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2330f6d58c54SBarry Smith     while (m > 0) {
2331f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2332f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2333f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2334f6d58c54SBarry Smith       m--;
2335f6d58c54SBarry Smith     }
2336f6d58c54SBarry Smith 
2337f6d58c54SBarry Smith     /* put in diagonal portion */
2338f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2339f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2340f6d58c54SBarry Smith     }
2341f6d58c54SBarry Smith 
2342f6d58c54SBarry Smith     /* put in upper diagonal portion */
2343f6d58c54SBarry Smith     while (m-- > 0) {
2344f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2345f6d58c54SBarry Smith     }
2346f6d58c54SBarry Smith   }
2347e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2348f6d58c54SBarry Smith 
2349f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2350f6d58c54SBarry Smith     Gather all column indices to all processors
2351f6d58c54SBarry Smith   */
2352f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2353f6d58c54SBarry Smith     recvcounts[i] = 0;
2354f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2355f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2356f6d58c54SBarry Smith     }
2357f6d58c54SBarry Smith   }
2358f6d58c54SBarry Smith   displs[0] = 0;
2359f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2360f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2361f6d58c54SBarry Smith   }
2362f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2363ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2364f6d58c54SBarry Smith #else
2365ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2366f6d58c54SBarry Smith #endif
2367f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2368f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2369f6d58c54SBarry Smith   */
2370f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2371f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2372f6d58c54SBarry Smith   /* set the b->i indices */
2373f6d58c54SBarry Smith   b->i[0] = 0;
2374f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2375f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2376f6d58c54SBarry Smith   }
2377f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2378f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2379f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2380f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2381f6d58c54SBarry Smith 
2382f6d58c54SBarry Smith   if (A->symmetric) {
2383f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2384f6d58c54SBarry Smith   } else if (A->hermitian) {
2385f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2386f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2387f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2388f6d58c54SBarry Smith   }
2389f6d58c54SBarry Smith   *newmat = B;
2390f6d58c54SBarry Smith   PetscFunctionReturn(0);
2391f6d58c54SBarry Smith }
2392f6d58c54SBarry Smith 
2393b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2394b1a666ecSBarry Smith {
2395b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2396b1a666ecSBarry Smith   PetscErrorCode ierr;
2397b1a666ecSBarry Smith   Vec            bb1 = 0;
2398b1a666ecSBarry Smith 
2399b1a666ecSBarry Smith   PetscFunctionBegin;
2400b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2401b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2402b1a666ecSBarry Smith     PetscFunctionReturn(0);
2403b1a666ecSBarry Smith   }
2404b1a666ecSBarry Smith 
24054e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
24064e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
24074e980039SJed Brown   }
24084e980039SJed Brown 
2409b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2410b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2411b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2412b1a666ecSBarry Smith       its--;
2413b1a666ecSBarry Smith     }
2414b1a666ecSBarry Smith 
2415b1a666ecSBarry Smith     while (its--) {
2416b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2417b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2418b1a666ecSBarry Smith 
2419b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2420b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2421b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2422b1a666ecSBarry Smith 
2423b1a666ecSBarry Smith       /* local sweep */
2424b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2425b1a666ecSBarry Smith     }
2426b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2427b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2428b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2429b1a666ecSBarry Smith       its--;
2430b1a666ecSBarry Smith     }
2431b1a666ecSBarry Smith     while (its--) {
2432b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2433b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2434b1a666ecSBarry Smith 
2435b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2436b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2437b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2438b1a666ecSBarry Smith 
2439b1a666ecSBarry Smith       /* local sweep */
2440b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2441b1a666ecSBarry Smith     }
2442b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2443b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2444b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2445b1a666ecSBarry Smith       its--;
2446b1a666ecSBarry Smith     }
2447b1a666ecSBarry Smith     while (its--) {
2448b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2449b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2450b1a666ecSBarry Smith 
2451b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2452b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2453b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2454b1a666ecSBarry Smith 
2455b1a666ecSBarry Smith       /* local sweep */
2456b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2457b1a666ecSBarry Smith     }
2458ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2459b1a666ecSBarry Smith 
24606bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2461b1a666ecSBarry Smith   PetscFunctionReturn(0);
2462b1a666ecSBarry Smith }
2463b1a666ecSBarry Smith 
246447f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
246547f7623dSRémi Lacroix {
246647f7623dSRémi Lacroix   PetscErrorCode ierr;
246747f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
246847f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
246947f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
247047f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
247147f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
247247f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
247347f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
247447f7623dSRémi Lacroix   PetscReal      *work;
247547f7623dSRémi Lacroix 
247647f7623dSRémi Lacroix   PetscFunctionBegin;
247747f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
24781795a4d1SJed Brown   ierr = PetscCalloc1(N,&work);CHKERRQ(ierr);
247947f7623dSRémi Lacroix   if (type == NORM_2) {
248047f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
248147f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
248247f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
248347f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
248447f7623dSRémi Lacroix           a_val++;
248547f7623dSRémi Lacroix         }
248647f7623dSRémi Lacroix       }
248747f7623dSRémi Lacroix     }
248847f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
248947f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
249047f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
249147f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
249247f7623dSRémi Lacroix           b_val++;
249347f7623dSRémi Lacroix         }
249447f7623dSRémi Lacroix       }
249547f7623dSRémi Lacroix     }
249647f7623dSRémi Lacroix   } else if (type == NORM_1) {
249747f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
249847f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
249947f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
250047f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
250147f7623dSRémi Lacroix           a_val++;
250247f7623dSRémi Lacroix         }
250347f7623dSRémi Lacroix       }
250447f7623dSRémi Lacroix     }
250547f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
250647f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
250747f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
250847f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
250947f7623dSRémi Lacroix           b_val++;
251047f7623dSRémi Lacroix         }
251147f7623dSRémi Lacroix       }
251247f7623dSRémi Lacroix     }
251347f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
251447f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
251547f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
251647f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
251747f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
251847f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
251947f7623dSRémi Lacroix           a_val++;
252047f7623dSRémi Lacroix         }
252147f7623dSRémi Lacroix       }
252247f7623dSRémi Lacroix     }
252347f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
252447f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
252547f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
252647f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
252747f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
252847f7623dSRémi Lacroix           b_val++;
252947f7623dSRémi Lacroix         }
253047f7623dSRémi Lacroix       }
253147f7623dSRémi Lacroix     }
253247f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
253347f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
2534b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
253547f7623dSRémi Lacroix   } else {
2536b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
253747f7623dSRémi Lacroix   }
253847f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
253947f7623dSRémi Lacroix   if (type == NORM_2) {
254047f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
254147f7623dSRémi Lacroix   }
254247f7623dSRémi Lacroix   PetscFunctionReturn(0);
254347f7623dSRémi Lacroix }
254447f7623dSRémi Lacroix 
2545713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2546bbead8a2SBarry Smith {
2547bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2548bbead8a2SBarry Smith   PetscErrorCode ierr;
2549bbead8a2SBarry Smith 
2550bbead8a2SBarry Smith   PetscFunctionBegin;
2551bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
25527b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
25537b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
25547b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
2555bbead8a2SBarry Smith   PetscFunctionReturn(0);
2556bbead8a2SBarry Smith }
2557bbead8a2SBarry Smith 
25587d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a)
25597d68702bSBarry Smith {
25607d68702bSBarry Smith   PetscErrorCode ierr;
25617d68702bSBarry Smith   Mat_MPIBAIJ    *maij = (Mat_MPIBAIJ*)Y->data;
25626f33a894SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)maij->A->data;
25637d68702bSBarry Smith 
25647d68702bSBarry Smith   PetscFunctionBegin;
25656f33a894SBarry Smith   if (!Y->preallocated) {
25667d68702bSBarry Smith     ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
25676f33a894SBarry Smith   } else if (!aij->nz) {
2568b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
25696f33a894SBarry Smith     ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
2570b83222d8SBarry Smith     aij->nonew = nonew;
25717d68702bSBarry Smith   }
25727d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
25737d68702bSBarry Smith   PetscFunctionReturn(0);
25747d68702bSBarry Smith }
25758c7482ecSBarry Smith 
25763b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
25773b49f96aSBarry Smith {
25783b49f96aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
25793b49f96aSBarry Smith   PetscErrorCode ierr;
25803b49f96aSBarry Smith 
25813b49f96aSBarry Smith   PetscFunctionBegin;
25823b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
25833b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
25843b49f96aSBarry Smith   if (d) {
25853b49f96aSBarry Smith     PetscInt rstart;
25863b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
25873b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
25883b49f96aSBarry Smith 
25893b49f96aSBarry Smith   }
25903b49f96aSBarry Smith   PetscFunctionReturn(0);
25913b49f96aSBarry Smith }
25923b49f96aSBarry Smith 
2593a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
2594a5b7ff6bSBarry Smith {
2595a5b7ff6bSBarry Smith   PetscFunctionBegin;
2596a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
2597a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2598a5b7ff6bSBarry Smith }
2599a5b7ff6bSBarry Smith 
260079bdfe76SSatish Balay /* -------------------------------------------------------------------*/
26013964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2602cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2603cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2604cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
260597304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
26067c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
26077c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2608cc2dc46cSBarry Smith                                        0,
2609cc2dc46cSBarry Smith                                        0,
2610cc2dc46cSBarry Smith                                        0,
261197304618SKris Buschelman                                 /*10*/ 0,
2612cc2dc46cSBarry Smith                                        0,
2613cc2dc46cSBarry Smith                                        0,
2614b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2615cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
261697304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
26177fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2618cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2619cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2620cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
262197304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2622cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2623cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2624cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2625d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2626cc2dc46cSBarry Smith                                        0,
2627cc2dc46cSBarry Smith                                        0,
2628cc2dc46cSBarry Smith                                        0,
2629cc2dc46cSBarry Smith                                        0,
26304994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2631273d9f13SBarry Smith                                        0,
2632cc2dc46cSBarry Smith                                        0,
2633a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2634cc2dc46cSBarry Smith                                        0,
2635d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2636cc2dc46cSBarry Smith                                        0,
2637cc2dc46cSBarry Smith                                        0,
2638cc2dc46cSBarry Smith                                        0,
2639cc2dc46cSBarry Smith                                        0,
2640d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
2641cc2dc46cSBarry Smith                                        MatGetSubMatrices_MPIBAIJ,
2642cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2643cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
26443c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2645d519adbfSMatthew Knepley                                 /*44*/ 0,
2646cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
26477d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2648cc2dc46cSBarry Smith                                        0,
26496f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2650f73d5cc4SBarry Smith                                 /*49*/ 0,
2651cc2dc46cSBarry Smith                                        0,
2652cc2dc46cSBarry Smith                                        0,
2653cc2dc46cSBarry Smith                                        0,
2654cc2dc46cSBarry Smith                                        0,
265593dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2656cc2dc46cSBarry Smith                                        0,
2657cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
265882094794SBarry Smith                                        MatPermute_MPIBAIJ,
2659cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
2660d519adbfSMatthew Knepley                                 /*59*/ MatGetSubMatrix_MPIBAIJ,
2661f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2662f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2663357abbc8SBarry Smith                                        0,
26647843d17aSBarry Smith                                        0,
2665d519adbfSMatthew Knepley                                 /*64*/ 0,
26667843d17aSBarry Smith                                        0,
26677843d17aSBarry Smith                                        0,
26687843d17aSBarry Smith                                        0,
26697843d17aSBarry Smith                                        0,
2670d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
26717843d17aSBarry Smith                                        0,
267297304618SKris Buschelman                                        0,
267397304618SKris Buschelman                                        0,
267497304618SKris Buschelman                                        0,
2675d519adbfSMatthew Knepley                                 /*74*/ 0,
2676f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
267797304618SKris Buschelman                                        0,
267897304618SKris Buschelman                                        0,
267997304618SKris Buschelman                                        0,
2680d519adbfSMatthew Knepley                                 /*79*/ 0,
268197304618SKris Buschelman                                        0,
268297304618SKris Buschelman                                        0,
268397304618SKris Buschelman                                        0,
26845bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2685d519adbfSMatthew Knepley                                 /*84*/ 0,
2686865e5f61SKris Buschelman                                        0,
2687865e5f61SKris Buschelman                                        0,
2688865e5f61SKris Buschelman                                        0,
2689865e5f61SKris Buschelman                                        0,
2690d519adbfSMatthew Knepley                                 /*89*/ 0,
2691865e5f61SKris Buschelman                                        0,
2692865e5f61SKris Buschelman                                        0,
2693865e5f61SKris Buschelman                                        0,
2694865e5f61SKris Buschelman                                        0,
2695d519adbfSMatthew Knepley                                 /*94*/ 0,
2696865e5f61SKris Buschelman                                        0,
2697865e5f61SKris Buschelman                                        0,
269899cafbc1SBarry Smith                                        0,
269999cafbc1SBarry Smith                                        0,
2700d519adbfSMatthew Knepley                                 /*99*/ 0,
270199cafbc1SBarry Smith                                        0,
270299cafbc1SBarry Smith                                        0,
270399cafbc1SBarry Smith                                        0,
270499cafbc1SBarry Smith                                        0,
2705d519adbfSMatthew Knepley                                 /*104*/0,
270699cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
27078c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
27088c7482ecSBarry Smith                                        0,
27098c7482ecSBarry Smith                                        0,
2710d519adbfSMatthew Knepley                                 /*109*/0,
27118c7482ecSBarry Smith                                        0,
27128c7482ecSBarry Smith                                        0,
27138c7482ecSBarry Smith                                        0,
27143b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2715d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
27168c7482ecSBarry Smith                                        0,
27174683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
27184683f7a4SShri Abhyankar                                        0,
27194683f7a4SShri Abhyankar                                        0,
27204683f7a4SShri Abhyankar                                 /*119*/0,
27214683f7a4SShri Abhyankar                                        0,
27224683f7a4SShri Abhyankar                                        0,
2723bbead8a2SBarry Smith                                        0,
2724e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2725bbead8a2SBarry Smith                                 /*124*/0,
272647f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
27273964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
27283964eb88SJed Brown                                        0,
27293964eb88SJed Brown                                        0,
27303964eb88SJed Brown                                /*129*/ 0,
27313964eb88SJed Brown                                        0,
27323964eb88SJed Brown                                        0,
27333964eb88SJed Brown                                        0,
27343964eb88SJed Brown                                        0,
27353964eb88SJed Brown                                /*134*/ 0,
27363964eb88SJed Brown                                        0,
27373964eb88SJed Brown                                        0,
27383964eb88SJed Brown                                        0,
27393964eb88SJed Brown                                        0,
274046533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2741f9426fe0SMark Adams                                        0,
27421919a2e2SJed Brown                                        0,
2743bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2744bdf6f3fcSHong Zhang                                        0,
2745bdf6f3fcSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ
27468c7482ecSBarry Smith };
274779bdfe76SSatish Balay 
274879bdfe76SSatish Balay 
2749cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2750d94109b8SHong Zhang 
2751cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2752aac34f13SBarry Smith {
2753b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2754b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2755b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2756b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2757d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2758aac34f13SBarry Smith   PetscErrorCode ierr;
2759aac34f13SBarry Smith 
2760aac34f13SBarry Smith   PetscFunctionBegin;
276126283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
276226283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
276326283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
276426283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2765e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2766d0f46423SBarry Smith   m      = B->rmap->n/bs;
2767d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2768d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2769d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2770b8d659d7SLisandro Dalcin 
2771e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2772dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2773aac34f13SBarry Smith   for (i=0; i<m; i++) {
2774cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2775e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2776b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2777cf12db73SBarry Smith     JJ     = jj + ii[i];
2778b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2779aac34f13SBarry Smith       if (*JJ >= cstart) break;
2780aac34f13SBarry Smith       JJ++;
2781aac34f13SBarry Smith     }
2782aac34f13SBarry Smith     d = 0;
2783b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2784aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2785aac34f13SBarry Smith       d++;
2786aac34f13SBarry Smith     }
2787aac34f13SBarry Smith     d_nnz[i] = d;
2788b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2789aac34f13SBarry Smith   }
2790aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2791fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2792aac34f13SBarry Smith 
2793b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2794b8d659d7SLisandro Dalcin   if (!values) {
2795785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2796b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2797b8d659d7SLisandro Dalcin   }
2798b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2799b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2800cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2801cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
28023adadaf3SJed Brown     if (!roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2803cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2804b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
28053adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
28063adadaf3SJed Brown       PetscInt j;
28073adadaf3SJed Brown       for (j=0; j<ncols; j++) {
28083adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
28093adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
28103adadaf3SJed Brown       }
28113adadaf3SJed Brown     }
2812aac34f13SBarry Smith   }
2813aac34f13SBarry Smith 
2814b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2815aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2816aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
28177827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2818aac34f13SBarry Smith   PetscFunctionReturn(0);
2819aac34f13SBarry Smith }
2820aac34f13SBarry Smith 
2821aac34f13SBarry Smith /*@C
2822dfb205c3SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2823aac34f13SBarry Smith    (the default parallel PETSc format).
2824aac34f13SBarry Smith 
2825aac34f13SBarry Smith    Collective on MPI_Comm
2826aac34f13SBarry Smith 
2827aac34f13SBarry Smith    Input Parameters:
28281c4f3114SJed Brown +  B - the matrix
2829dfb205c3SBarry Smith .  bs - the block size
2830aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2831aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2832aac34f13SBarry Smith -  v - optional values in the matrix
2833aac34f13SBarry Smith 
2834aac34f13SBarry Smith    Level: developer
2835aac34f13SBarry Smith 
28363adadaf3SJed Brown    Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
28373adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
28383adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
28393adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
28403adadaf3SJed Brown    block column and the second index is over columns within a block.
28413adadaf3SJed Brown 
2842aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2843aac34f13SBarry Smith 
28443adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2845aac34f13SBarry Smith @*/
28467087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2847aac34f13SBarry Smith {
28484ac538c5SBarry Smith   PetscErrorCode ierr;
2849aac34f13SBarry Smith 
2850aac34f13SBarry Smith   PetscFunctionBegin;
28516ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
28526ba663aaSJed Brown   PetscValidType(B,1);
28536ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
28544ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2855aac34f13SBarry Smith   PetscFunctionReturn(0);
2856aac34f13SBarry Smith }
2857aac34f13SBarry Smith 
2858b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2859a23d5eceSKris Buschelman {
2860a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2861dfbe8321SBarry Smith   PetscErrorCode ierr;
2862535b19f3SBarry Smith   PetscInt       i;
2863a23d5eceSKris Buschelman 
2864a23d5eceSKris Buschelman   PetscFunctionBegin;
286533d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
286626283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
286726283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2868e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2869899cda47SBarry Smith 
2870a23d5eceSKris Buschelman   if (d_nnz) {
2871d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2872e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2873a23d5eceSKris Buschelman     }
2874a23d5eceSKris Buschelman   }
2875a23d5eceSKris Buschelman   if (o_nnz) {
2876d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2877e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2878a23d5eceSKris Buschelman     }
2879a23d5eceSKris Buschelman   }
2880a23d5eceSKris Buschelman 
2881a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2882a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2883d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2884d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2885d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2886d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2887a23d5eceSKris Buschelman 
2888a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2889d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2890a23d5eceSKris Buschelman   }
2891d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2892d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2893d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2894d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2895a23d5eceSKris Buschelman 
2896cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2897cb7b82ddSBarry Smith   ierr = PetscTableDestroy(&b->colmap);CHKERRQ(ierr);
2898cb7b82ddSBarry Smith #else
2899cb7b82ddSBarry Smith   ierr = PetscFree(b->colmap);CHKERRQ(ierr);
2900cb7b82ddSBarry Smith #endif
2901cb7b82ddSBarry Smith   ierr = PetscFree(b->garray);CHKERRQ(ierr);
2902cb7b82ddSBarry Smith   ierr = VecDestroy(&b->lvec);CHKERRQ(ierr);
2903cb7b82ddSBarry Smith   ierr = VecScatterDestroy(&b->Mvctx);CHKERRQ(ierr);
2904cb7b82ddSBarry Smith 
2905cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
2906cb7b82ddSBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2907cb7b82ddSBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2908cb7b82ddSBarry Smith   ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
2909cb7b82ddSBarry Smith   ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
2910cb7b82ddSBarry Smith   ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
2911cb7b82ddSBarry Smith 
2912526dfc15SBarry Smith   if (!B->preallocated) {
2913f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2914d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
29159c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
29163bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
2917ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
2918526dfc15SBarry Smith   }
2919a23d5eceSKris Buschelman 
2920526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2921526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2922526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2923cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2924cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2925a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2926a23d5eceSKris Buschelman }
2927a23d5eceSKris Buschelman 
29287087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
29297087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
29305bf65638SKris Buschelman 
2931cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
293282094794SBarry Smith {
293382094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
293482094794SBarry Smith   PetscErrorCode ierr;
293582094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
293682094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
293782094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
293882094794SBarry Smith 
293982094794SBarry Smith   PetscFunctionBegin;
2940854ce69bSBarry Smith   ierr  = PetscMalloc1(M+1,&ii);CHKERRQ(ierr);
294182094794SBarry Smith   ii[0] = 0;
294282094794SBarry Smith   for (i=0; i<M; i++) {
2943e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
2944e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
294582094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
29465ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
29475ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
29485ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
29495ee9ba1cSJed Brown     }
295082094794SBarry Smith   }
2951785e854fSJed Brown   ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr);
295282094794SBarry Smith   cnt  = 0;
295382094794SBarry Smith   for (i=0; i<M; i++) {
295482094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
295582094794SBarry Smith       if (garray[jo[j]] > rstart) break;
295682094794SBarry Smith       jj[cnt++] = garray[jo[j]];
295782094794SBarry Smith     }
295882094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
29595ee9ba1cSJed Brown       if (jd[k] != i) {
296082094794SBarry Smith         jj[cnt++] = rstart + jd[k];
296182094794SBarry Smith       }
29625ee9ba1cSJed Brown     }
296382094794SBarry Smith     for (; j<io[i+1]; j++) {
296482094794SBarry Smith       jj[cnt++] = garray[jo[j]];
296582094794SBarry Smith     }
296682094794SBarry Smith   }
2967ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
296882094794SBarry Smith   PetscFunctionReturn(0);
296982094794SBarry Smith }
297082094794SBarry Smith 
2971c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
297262471d69SBarry Smith 
2973cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2974b2573a8aSBarry Smith 
2975cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
297662471d69SBarry Smith {
297762471d69SBarry Smith   PetscErrorCode ierr;
297862471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
297962471d69SBarry Smith   Mat            B;
298085a69837SSatish Balay   Mat_MPIAIJ     *b;
298162471d69SBarry Smith 
298262471d69SBarry Smith   PetscFunctionBegin;
2983ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
298462471d69SBarry Smith 
2985ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
29866d0a4a0eSHong Zhang   ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
2987f090d951SRémi Lacroix   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
2988f090d951SRémi Lacroix   ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr);
29890298fd71SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
29900298fd71SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
299162471d69SBarry Smith   b    = (Mat_MPIAIJ*) B->data;
299262471d69SBarry Smith 
29936bf464f9SBarry Smith   ierr = MatDestroy(&b->A);CHKERRQ(ierr);
29946bf464f9SBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
2995ab9863d7SBarry Smith   ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
299662471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
299762471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
299862471d69SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
299962471d69SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
30006a719282SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
30016a719282SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3002511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
300328be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
300462471d69SBarry Smith   } else {
300562471d69SBarry Smith    *newmat = B;
300662471d69SBarry Smith   }
300762471d69SBarry Smith   PetscFunctionReturn(0);
300862471d69SBarry Smith }
300962471d69SBarry Smith 
30100bad9183SKris Buschelman /*MC
3011fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
30120bad9183SKris Buschelman 
30130bad9183SKris Buschelman    Options Database Keys:
30148c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
30158c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
30168c07d4e3SBarry Smith - -mat_use_hash_table <fact>
30170bad9183SKris Buschelman 
30180bad9183SKris Buschelman   Level: beginner
30190bad9183SKris Buschelman 
30200bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
30210bad9183SKris Buschelman M*/
30220bad9183SKris Buschelman 
3023cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
3024c0cdd4a1SDahai Guo 
30258cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
3026273d9f13SBarry Smith {
3027273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
3028dfbe8321SBarry Smith   PetscErrorCode ierr;
302994ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
3030273d9f13SBarry Smith 
3031273d9f13SBarry Smith   PetscFunctionBegin;
3032b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
303382502324SSatish Balay   B->data = (void*)b;
303482502324SSatish Balay 
3035273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
3036273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
3037273d9f13SBarry Smith 
3038273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
3039ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
3040ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
3041273d9f13SBarry Smith 
3042273d9f13SBarry Smith   /* build local table of row and column ownerships */
3043854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr);
3044273d9f13SBarry Smith 
3045273d9f13SBarry Smith   /* build cache for off array entries formed */
3046ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
304726fbe8dcSKarl Rupp 
3048273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
30490298fd71SBarry Smith   b->colmap      = NULL;
30500298fd71SBarry Smith   b->garray      = NULL;
3051273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
3052273d9f13SBarry Smith 
3053273d9f13SBarry Smith   /* stuff used in block assembly */
3054273d9f13SBarry Smith   b->barray = 0;
3055273d9f13SBarry Smith 
3056273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
3057273d9f13SBarry Smith   b->lvec  = 0;
3058273d9f13SBarry Smith   b->Mvctx = 0;
3059273d9f13SBarry Smith 
3060273d9f13SBarry Smith   /* stuff for MatGetRow() */
3061273d9f13SBarry Smith   b->rowindices   = 0;
3062273d9f13SBarry Smith   b->rowvalues    = 0;
3063273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
3064273d9f13SBarry Smith 
3065273d9f13SBarry Smith   /* hash table stuff */
3066273d9f13SBarry Smith   b->ht           = 0;
3067273d9f13SBarry Smith   b->hd           = 0;
3068273d9f13SBarry Smith   b->ht_size      = 0;
3069273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
3070273d9f13SBarry Smith   b->ht_fact      = 0;
3071273d9f13SBarry Smith   b->ht_total_ct  = 0;
3072273d9f13SBarry Smith   b->ht_insert_ct = 0;
3073273d9f13SBarry Smith 
30747a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
30757a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
30767a868f3eSHong Zhang 
30778c07d4e3SBarry Smith 
3078bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
3079bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
3080bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
30817ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
30827ea3e4caSstefano_zampini   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE);CHKERRQ(ierr);
30837ea3e4caSstefano_zampini #endif
3084bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3085bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3086bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3087bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
3088bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
3089bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
309017667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
309194ae4db5SBarry Smith 
309294ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
3093abf3b562SBarry Smith   ierr = PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg);CHKERRQ(ierr);
309494ae4db5SBarry Smith   if (flg) {
309594ae4db5SBarry Smith     PetscReal fact = 1.39;
309694ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
309794ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
309894ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
309994ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
310094ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
310194ae4db5SBarry Smith   }
310294ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
3103273d9f13SBarry Smith   PetscFunctionReturn(0);
3104273d9f13SBarry Smith }
3105273d9f13SBarry Smith 
3106209238afSKris Buschelman /*MC
3107002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3108209238afSKris Buschelman 
3109209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3110209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3111209238afSKris Buschelman 
3112209238afSKris Buschelman    Options Database Keys:
3113209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3114209238afSKris Buschelman 
3115209238afSKris Buschelman   Level: beginner
3116209238afSKris Buschelman 
311769b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3118209238afSKris Buschelman M*/
3119209238afSKris Buschelman 
3120273d9f13SBarry Smith /*@C
3121aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3122273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3123273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3124273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3125273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3126273d9f13SBarry Smith 
3127273d9f13SBarry Smith    Collective on Mat
3128273d9f13SBarry Smith 
3129273d9f13SBarry Smith    Input Parameters:
31301c4f3114SJed Brown +  B - the matrix
3131bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3132bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3133273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3134273d9f13SBarry Smith            submatrix  (same for all local rows)
3135273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3136273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
31370298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
313895742e49SBarry Smith            set it even if it is zero.
3139273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3140273d9f13SBarry Smith            submatrix (same for all local rows).
3141273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3142273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
31430298fd71SBarry Smith            each block row) or NULL.
3144273d9f13SBarry Smith 
314549a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3146273d9f13SBarry Smith 
3147273d9f13SBarry Smith    Options Database Keys:
31488c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31498c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3150273d9f13SBarry Smith 
3151273d9f13SBarry Smith    Notes:
3152273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3153273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3154273d9f13SBarry Smith 
3155273d9f13SBarry Smith    Storage Information:
3156273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3157273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3158273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3159273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3160273d9f13SBarry Smith 
3161273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3162273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
31630298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3164273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3165273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3166273d9f13SBarry Smith 
3167273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3168273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3169273d9f13SBarry Smith 
3170273d9f13SBarry Smith .vb
3171273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3172a4b1a0f6SJed Brown           --------------------------
3173273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3174273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3175273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3176a4b1a0f6SJed Brown           --------------------------
3177273d9f13SBarry Smith .ve
3178273d9f13SBarry Smith 
3179273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3180273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3181273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3182273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3183273d9f13SBarry Smith 
3184273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3185273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3186273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3187273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3188273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3189273d9f13SBarry Smith    matrices.
3190273d9f13SBarry Smith 
3191aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3192aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3193aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3194aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3195aa95bbe8SBarry Smith 
3196273d9f13SBarry Smith    Level: intermediate
3197273d9f13SBarry Smith 
3198273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3199273d9f13SBarry Smith 
3200ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3201273d9f13SBarry Smith @*/
32027087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3203273d9f13SBarry Smith {
32044ac538c5SBarry Smith   PetscErrorCode ierr;
3205273d9f13SBarry Smith 
3206273d9f13SBarry Smith   PetscFunctionBegin;
32076ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
32086ba663aaSJed Brown   PetscValidType(B,1);
32096ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
32104ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3211273d9f13SBarry Smith   PetscFunctionReturn(0);
3212273d9f13SBarry Smith }
3213273d9f13SBarry Smith 
321479bdfe76SSatish Balay /*@C
321569b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
321679bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
321779bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
321879bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
321979bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
322079bdfe76SSatish Balay 
3221db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3222db81eaa0SLois Curfman McInnes 
322379bdfe76SSatish Balay    Input Parameters:
3224db81eaa0SLois Curfman McInnes +  comm - MPI communicator
3225bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3226bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
322779bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
322892e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
322992e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
323092e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
323192e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
323292e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3233be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3234be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
323547a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
323679bdfe76SSatish Balay            submatrix  (same for all local rows)
323747a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
323892e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
32390298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
324095742e49SBarry Smith            and set it even if it is zero.
324147a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
324279bdfe76SSatish Balay            submatrix (same for all local rows).
324347a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
324492e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
32450298fd71SBarry Smith            each block row) or NULL.
324679bdfe76SSatish Balay 
324779bdfe76SSatish Balay    Output Parameter:
324879bdfe76SSatish Balay .  A - the matrix
324979bdfe76SSatish Balay 
3250db81eaa0SLois Curfman McInnes    Options Database Keys:
32518c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
32528c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
32533ffaccefSLois Curfman McInnes 
3254175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3255ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3256175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3257175b88e8SBarry Smith 
3258b259b22eSLois Curfman McInnes    Notes:
325949a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
326049a6f317SBarry Smith 
326147a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
326247a75d0bSBarry Smith 
326379bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
326479bdfe76SSatish Balay    (possibly both).
326579bdfe76SSatish Balay 
3266be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3267be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3268be79a94dSBarry Smith 
326979bdfe76SSatish Balay    Storage Information:
327079bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
327179bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
327279bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
327379bdfe76SSatish Balay    local matrix (a rectangular submatrix).
327479bdfe76SSatish Balay 
327579bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
327679bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
32770298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
327879bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
327979bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
328079bdfe76SSatish Balay 
328179bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
328279bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
328379bdfe76SSatish Balay 
3284db81eaa0SLois Curfman McInnes .vb
3285db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3286a4b1a0f6SJed Brown           --------------------------
3287db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3288db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3289db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3290a4b1a0f6SJed Brown           --------------------------
3291db81eaa0SLois Curfman McInnes .ve
329279bdfe76SSatish Balay 
329379bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
329479bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
329579bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
329657b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
329779bdfe76SSatish Balay 
3298d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3299d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
330079bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
330192e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
330292e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
33036da5968aSLois Curfman McInnes    matrices.
330479bdfe76SSatish Balay 
3305027ccd11SLois Curfman McInnes    Level: intermediate
3306027ccd11SLois Curfman McInnes 
330792e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
330879bdfe76SSatish Balay 
330969b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
331079bdfe76SSatish Balay @*/
331169b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
331279bdfe76SSatish Balay {
33136849ba73SBarry Smith   PetscErrorCode ierr;
3314b24ad042SBarry Smith   PetscMPIInt    size;
331579bdfe76SSatish Balay 
3316d64ed03dSBarry Smith   PetscFunctionBegin;
3317f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3318f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3319d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3320273d9f13SBarry Smith   if (size > 1) {
3321273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3322273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3323273d9f13SBarry Smith   } else {
3324273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3325273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
33263914022bSBarry Smith   }
33273a40ed3dSBarry Smith   PetscFunctionReturn(0);
332879bdfe76SSatish Balay }
3329026e39d0SSatish Balay 
33306849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
33310ac07820SSatish Balay {
33320ac07820SSatish Balay   Mat            mat;
33330ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3334dfbe8321SBarry Smith   PetscErrorCode ierr;
3335b24ad042SBarry Smith   PetscInt       len=0;
33360ac07820SSatish Balay 
3337d64ed03dSBarry Smith   PetscFunctionBegin;
33380ac07820SSatish Balay   *newmat = 0;
3339ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3340d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
33417adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
33421d5dac46SHong Zhang   ierr    = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
33437fff6886SHong Zhang 
3344d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3345273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
33460ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
33477fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
33487fff6886SHong Zhang 
3349273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3350d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
33510ac07820SSatish Balay   a->bs2        = oldmat->bs2;
33520ac07820SSatish Balay   a->mbs        = oldmat->mbs;
33530ac07820SSatish Balay   a->nbs        = oldmat->nbs;
33540ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
33550ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
33560ac07820SSatish Balay 
33571e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
33581e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3359899cda47SBarry Smith 
33600ac07820SSatish Balay   a->size         = oldmat->size;
33610ac07820SSatish Balay   a->rank         = oldmat->rank;
3362aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3363aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3364aef5e8e0SSatish Balay   a->rowindices   = 0;
33650ac07820SSatish Balay   a->rowvalues    = 0;
33660ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
336730793edcSSatish Balay   a->barray       = 0;
3368899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3369899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3370899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3371899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
33720ac07820SSatish Balay 
3373133cdb44SSatish Balay   /* hash table stuff */
3374133cdb44SSatish Balay   a->ht           = 0;
3375133cdb44SSatish Balay   a->hd           = 0;
3376133cdb44SSatish Balay   a->ht_size      = 0;
3377133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
337825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3379133cdb44SSatish Balay   a->ht_total_ct  = 0;
3380133cdb44SSatish Balay   a->ht_insert_ct = 0;
3381133cdb44SSatish Balay 
3382899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
33830ac07820SSatish Balay   if (oldmat->colmap) {
3384aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
33850f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
338648e59246SSatish Balay #else
3387854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
33883bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3389b24ad042SBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
339048e59246SSatish Balay #endif
33910ac07820SSatish Balay   } else a->colmap = 0;
33924beb1cfeSHong Zhang 
33930ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3394785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
33953bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3396b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
33970ac07820SSatish Balay   } else a->garray = 0;
33980ac07820SSatish Balay 
3399ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
34000ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
34013bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
34020ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
34033bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
34047fff6886SHong Zhang 
34052e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
34063bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
34072e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
34083bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3409140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
34100ac07820SSatish Balay   *newmat = mat;
34113a40ed3dSBarry Smith   PetscFunctionReturn(0);
34120ac07820SSatish Balay }
341357b952d6SSatish Balay 
3414112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer)
34154683f7a4SShri Abhyankar {
34164683f7a4SShri Abhyankar   PetscErrorCode ierr;
34174683f7a4SShri Abhyankar   int            fd;
34184683f7a4SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
34194683f7a4SShri Abhyankar   PetscScalar    *vals,*buf;
3420ce94432eSBarry Smith   MPI_Comm       comm;
34214683f7a4SShri Abhyankar   MPI_Status     status;
34224683f7a4SShri Abhyankar   PetscMPIInt    rank,size,maxnz;
34234683f7a4SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
34240298fd71SBarry Smith   PetscInt       *locrowlens = NULL,*procsnz = NULL,*browners = NULL;
34253059b6faSBarry Smith   PetscInt       jj,*mycols,*ibuf,bs = newmat->rmap->bs,Mbs,mbs,extra_rows,mmax;
34264683f7a4SShri Abhyankar   PetscMPIInt    tag    = ((PetscObject)viewer)->tag;
34270298fd71SBarry Smith   PetscInt       *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount;
3428461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
34294683f7a4SShri Abhyankar 
34304683f7a4SShri Abhyankar   PetscFunctionBegin;
3431c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
3432c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
3433ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
34340298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
34350298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
34364683f7a4SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
34373059b6faSBarry Smith   if (bs < 0) bs = 1;
34384683f7a4SShri Abhyankar 
34394683f7a4SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
34404683f7a4SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
34414683f7a4SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
34425872f025SBarry Smith   if (!rank) {
34434683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
34444683f7a4SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
344502f61395SBarry Smith     if (header[3] < 0) SETERRQ(PetscObjectComm((PetscObject)newmat),PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIAIJ");
34464683f7a4SShri Abhyankar   }
34474683f7a4SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
34484683f7a4SShri Abhyankar   M    = header[1]; N = header[2];
34494683f7a4SShri Abhyankar 
34504683f7a4SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
3451461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
3452461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
34534683f7a4SShri Abhyankar 
3454ce94432eSBarry Smith   if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices");
34554683f7a4SShri Abhyankar 
34564683f7a4SShri Abhyankar   /*
34574683f7a4SShri Abhyankar      This code adds extra rows to make sure the number of rows is
34584683f7a4SShri Abhyankar      divisible by the blocksize
34594683f7a4SShri Abhyankar   */
34604683f7a4SShri Abhyankar   Mbs        = M/bs;
34614683f7a4SShri Abhyankar   extra_rows = bs - M + bs*Mbs;
34624683f7a4SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
34634683f7a4SShri Abhyankar   else                  Mbs++;
34644683f7a4SShri Abhyankar   if (extra_rows && !rank) {
34654683f7a4SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
34664683f7a4SShri Abhyankar   }
34674683f7a4SShri Abhyankar 
34684683f7a4SShri Abhyankar   /* determine ownership of all rows */
34694683f7a4SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
34704683f7a4SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
34714683f7a4SShri Abhyankar     m   = mbs*bs;
34724683f7a4SShri Abhyankar   } else { /* User set */
34734683f7a4SShri Abhyankar     m   = newmat->rmap->n;
34744683f7a4SShri Abhyankar     mbs = m/bs;
34754683f7a4SShri Abhyankar   }
3476dcca6d9dSJed Brown   ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
34774683f7a4SShri Abhyankar   ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
34784683f7a4SShri Abhyankar 
34794683f7a4SShri Abhyankar   /* process 0 needs enough room for process with most rows */
34804683f7a4SShri Abhyankar   if (!rank) {
34814683f7a4SShri Abhyankar     mmax = rowners[1];
34821251c579SMatthew G Knepley     for (i=2; i<=size; i++) {
34834683f7a4SShri Abhyankar       mmax = PetscMax(mmax,rowners[i]);
34844683f7a4SShri Abhyankar     }
34854683f7a4SShri Abhyankar     mmax*=bs;
34863964eb88SJed Brown   } else mmax = -1;             /* unused, but compiler warns anyway */
34874683f7a4SShri Abhyankar 
34884683f7a4SShri Abhyankar   rowners[0] = 0;
34894683f7a4SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
34904683f7a4SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
34914683f7a4SShri Abhyankar   rstart = rowners[rank];
34924683f7a4SShri Abhyankar   rend   = rowners[rank+1];
34934683f7a4SShri Abhyankar 
34944683f7a4SShri Abhyankar   /* distribute row lengths to all processors */
3495785e854fSJed Brown   ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr);
34964683f7a4SShri Abhyankar   if (!rank) {
34974683f7a4SShri Abhyankar     mend = m;
34984683f7a4SShri Abhyankar     if (size == 1) mend = mend - extra_rows;
34994683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
35004683f7a4SShri Abhyankar     for (j=mend; j<m; j++) locrowlens[j] = 1;
3501785e854fSJed Brown     ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr);
35021795a4d1SJed Brown     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
35034683f7a4SShri Abhyankar     for (j=0; j<m; j++) {
35044683f7a4SShri Abhyankar       procsnz[0] += locrowlens[j];
35054683f7a4SShri Abhyankar     }
35064683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
35074683f7a4SShri Abhyankar       mend = browners[i+1] - browners[i];
35084683f7a4SShri Abhyankar       if (i == size-1) mend = mend - extra_rows;
35094683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
35104683f7a4SShri Abhyankar       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
35114683f7a4SShri Abhyankar       /* calculate the number of nonzeros on each processor */
35124683f7a4SShri Abhyankar       for (j=0; j<browners[i+1]-browners[i]; j++) {
35134683f7a4SShri Abhyankar         procsnz[i] += rowlengths[j];
35144683f7a4SShri Abhyankar       }
35154683f7a4SShri Abhyankar       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
35164683f7a4SShri Abhyankar     }
35174683f7a4SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
35184683f7a4SShri Abhyankar   } else {
35194683f7a4SShri Abhyankar     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
35204683f7a4SShri Abhyankar   }
35214683f7a4SShri Abhyankar 
35224683f7a4SShri Abhyankar   if (!rank) {
35234683f7a4SShri Abhyankar     /* determine max buffer needed and allocate it */
35244683f7a4SShri Abhyankar     maxnz = procsnz[0];
35254683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
35264683f7a4SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
35274683f7a4SShri Abhyankar     }
3528785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
35294683f7a4SShri Abhyankar 
35304683f7a4SShri Abhyankar     /* read in my part of the matrix column indices  */
35314683f7a4SShri Abhyankar     nz     = procsnz[0];
3532854ce69bSBarry Smith     ierr   = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr);
35334683f7a4SShri Abhyankar     mycols = ibuf;
35344683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
35354683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
353626fbe8dcSKarl Rupp     if (size == 1) {
353726fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
353826fbe8dcSKarl Rupp     }
35394683f7a4SShri Abhyankar 
35404683f7a4SShri Abhyankar     /* read in every ones (except the last) and ship off */
35414683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
35424683f7a4SShri Abhyankar       nz   = procsnz[i];
35434683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
35444683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
35454683f7a4SShri Abhyankar     }
35464683f7a4SShri Abhyankar     /* read in the stuff for the last proc */
35474683f7a4SShri Abhyankar     if (size != 1) {
35484683f7a4SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
35494683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
35504683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
35514683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
35524683f7a4SShri Abhyankar     }
35534683f7a4SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
35544683f7a4SShri Abhyankar   } else {
35554683f7a4SShri Abhyankar     /* determine buffer space needed for message */
35564683f7a4SShri Abhyankar     nz = 0;
35574683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
35584683f7a4SShri Abhyankar       nz += locrowlens[i];
35594683f7a4SShri Abhyankar     }
3560854ce69bSBarry Smith     ierr   = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr);
35614683f7a4SShri Abhyankar     mycols = ibuf;
35624683f7a4SShri Abhyankar     /* receive message of column indices*/
35634683f7a4SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
35644683f7a4SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
35654683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
35664683f7a4SShri Abhyankar   }
35674683f7a4SShri Abhyankar 
35684683f7a4SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
3569dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
35701795a4d1SJed Brown   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
35714683f7a4SShri Abhyankar   rowcount = 0; nzcount = 0;
35724683f7a4SShri Abhyankar   for (i=0; i<mbs; i++) {
35734683f7a4SShri Abhyankar     dcount  = 0;
35744683f7a4SShri Abhyankar     odcount = 0;
35754683f7a4SShri Abhyankar     for (j=0; j<bs; j++) {
35764683f7a4SShri Abhyankar       kmax = locrowlens[rowcount];
35774683f7a4SShri Abhyankar       for (k=0; k<kmax; k++) {
35784683f7a4SShri Abhyankar         tmp = mycols[nzcount++]/bs;
35794683f7a4SShri Abhyankar         if (!mask[tmp]) {
35804683f7a4SShri Abhyankar           mask[tmp] = 1;
35814683f7a4SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
35824683f7a4SShri Abhyankar           else masked1[dcount++] = tmp;
35834683f7a4SShri Abhyankar         }
35844683f7a4SShri Abhyankar       }
35854683f7a4SShri Abhyankar       rowcount++;
35864683f7a4SShri Abhyankar     }
35874683f7a4SShri Abhyankar 
35884683f7a4SShri Abhyankar     dlens[i]  = dcount;
35894683f7a4SShri Abhyankar     odlens[i] = odcount;
35904683f7a4SShri Abhyankar 
35914683f7a4SShri Abhyankar     /* zero out the mask elements we set */
35924683f7a4SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
35934683f7a4SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
35944683f7a4SShri Abhyankar   }
35954683f7a4SShri Abhyankar 
35964683f7a4SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
35974683f7a4SShri Abhyankar   ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
35984683f7a4SShri Abhyankar 
35994683f7a4SShri Abhyankar   if (!rank) {
3600854ce69bSBarry Smith     ierr = PetscMalloc1(maxnz+1,&buf);CHKERRQ(ierr);
36014683f7a4SShri Abhyankar     /* read in my part of the matrix numerical values  */
36024683f7a4SShri Abhyankar     nz     = procsnz[0];
36034683f7a4SShri Abhyankar     vals   = buf;
36044683f7a4SShri Abhyankar     mycols = ibuf;
36054683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
36064683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
360726fbe8dcSKarl Rupp     if (size == 1) {
360826fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
360926fbe8dcSKarl Rupp     }
36104683f7a4SShri Abhyankar 
36114683f7a4SShri Abhyankar     /* insert into matrix */
36124683f7a4SShri Abhyankar     jj = rstart*bs;
36134683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
36144683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
36154683f7a4SShri Abhyankar       mycols += locrowlens[i];
36164683f7a4SShri Abhyankar       vals   += locrowlens[i];
36174683f7a4SShri Abhyankar       jj++;
36184683f7a4SShri Abhyankar     }
36194683f7a4SShri Abhyankar     /* read in other processors (except the last one) and ship out */
36204683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
36214683f7a4SShri Abhyankar       nz   = procsnz[i];
36224683f7a4SShri Abhyankar       vals = buf;
36234683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3624479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36254683f7a4SShri Abhyankar     }
36264683f7a4SShri Abhyankar     /* the last proc */
36274683f7a4SShri Abhyankar     if (size != 1) {
36284683f7a4SShri Abhyankar       nz   = procsnz[i] - extra_rows;
36294683f7a4SShri Abhyankar       vals = buf;
36304683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
36314683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
3632479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36334683f7a4SShri Abhyankar     }
36344683f7a4SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
36354683f7a4SShri Abhyankar   } else {
36364683f7a4SShri Abhyankar     /* receive numeric values */
3637854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&buf);CHKERRQ(ierr);
36384683f7a4SShri Abhyankar 
36394683f7a4SShri Abhyankar     /* receive message of values*/
36404683f7a4SShri Abhyankar     vals   = buf;
36414683f7a4SShri Abhyankar     mycols = ibuf;
3642479e424cSMichael Lange     ierr   = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
36434683f7a4SShri Abhyankar 
36444683f7a4SShri Abhyankar     /* insert into matrix */
36454683f7a4SShri Abhyankar     jj = rstart*bs;
36464683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
36474683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
36484683f7a4SShri Abhyankar       mycols += locrowlens[i];
36494683f7a4SShri Abhyankar       vals   += locrowlens[i];
36504683f7a4SShri Abhyankar       jj++;
36514683f7a4SShri Abhyankar     }
36524683f7a4SShri Abhyankar   }
36534683f7a4SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
36544683f7a4SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
36554683f7a4SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
36564683f7a4SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
36574683f7a4SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
36584683f7a4SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
36594683f7a4SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36604683f7a4SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36614683f7a4SShri Abhyankar   PetscFunctionReturn(0);
36624683f7a4SShri Abhyankar }
36634683f7a4SShri Abhyankar 
3664133cdb44SSatish Balay /*@
3665133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3666133cdb44SSatish Balay 
3667133cdb44SSatish Balay    Input Parameters:
3668133cdb44SSatish Balay .  mat  - the matrix
3669133cdb44SSatish Balay .  fact - factor
3670133cdb44SSatish Balay 
3671c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3672fee21e36SBarry Smith 
36738c890885SBarry Smith    Level: advanced
36748c890885SBarry Smith 
3675133cdb44SSatish Balay   Notes:
36768c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3677133cdb44SSatish Balay 
3678133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3679133cdb44SSatish Balay 
3680133cdb44SSatish Balay .seealso: MatSetOption()
3681133cdb44SSatish Balay @*/
36827087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3683133cdb44SSatish Balay {
36844ac538c5SBarry Smith   PetscErrorCode ierr;
36855bf65638SKris Buschelman 
36865bf65638SKris Buschelman   PetscFunctionBegin;
36874ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
36885bf65638SKris Buschelman   PetscFunctionReturn(0);
36895bf65638SKris Buschelman }
36905bf65638SKris Buschelman 
36917087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
36925bf65638SKris Buschelman {
369325fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3694133cdb44SSatish Balay 
3695133cdb44SSatish Balay   PetscFunctionBegin;
3696133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3697133cdb44SSatish Balay   baij->ht_fact = fact;
3698133cdb44SSatish Balay   PetscFunctionReturn(0);
3699133cdb44SSatish Balay }
3700f2a5309cSSatish Balay 
37019230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3702f2a5309cSSatish Balay {
3703f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
37045fd66863SKarl Rupp 
3705f2a5309cSSatish Balay   PetscFunctionBegin;
370621e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
370721e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
370821e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3709f2a5309cSSatish Balay   PetscFunctionReturn(0);
3710f2a5309cSSatish Balay }
371185535b8eSBarry Smith 
371285535b8eSBarry Smith /*
371385535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
371485535b8eSBarry Smith */
371585535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
371685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
371785535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
371885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
371985535b8eSBarry Smith #endif
372085535b8eSBarry Smith 
372185535b8eSBarry Smith /*@C
372285535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
372385535b8eSBarry Smith 
372485535b8eSBarry Smith   Collective on Mat
372585535b8eSBarry Smith 
372685535b8eSBarry Smith   Input Parameters:
372785535b8eSBarry Smith + mat - the matrix
372885535b8eSBarry Smith . min - number of input rows
372985535b8eSBarry Smith . im - input rows
373085535b8eSBarry Smith . nin - number of input columns
373185535b8eSBarry Smith . in - input columns
373285535b8eSBarry Smith . v - numerical values input
373385535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
373485535b8eSBarry Smith 
373585535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
373685535b8eSBarry Smith 
373785535b8eSBarry Smith   Level: advanced
373885535b8eSBarry Smith 
373985535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
374085535b8eSBarry Smith @*/
374185535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
374285535b8eSBarry Smith {
374385535b8eSBarry Smith   /* convert input arguments to C version */
374485535b8eSBarry Smith   Mat        mat  = *matin;
374585535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
374685535b8eSBarry Smith   InsertMode addv = *addvin;
374785535b8eSBarry Smith 
374885535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
374985535b8eSBarry Smith   const MatScalar *value;
375085535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3751ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
375285535b8eSBarry Smith   PetscErrorCode  ierr;
375385535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
375485535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3755d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
375685535b8eSBarry Smith 
375785535b8eSBarry Smith   PetscFunctionBegin;
375885535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
375926fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
376085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3761e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3762e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
376385535b8eSBarry Smith #endif
376485535b8eSBarry Smith   if (mat->assembled) {
376585535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
376685535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
376785535b8eSBarry Smith   }
376885535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
376985535b8eSBarry Smith 
377085535b8eSBarry Smith 
377185535b8eSBarry Smith   if (!barray) {
3772785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
377385535b8eSBarry Smith     baij->barray = barray;
377485535b8eSBarry Smith   }
377585535b8eSBarry Smith 
377626fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
377726fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
377826fbe8dcSKarl Rupp 
377985535b8eSBarry Smith   for (i=0; i<m; i++) {
378085535b8eSBarry Smith     if (im[i] < 0) continue;
378185535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3782e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
378385535b8eSBarry Smith #endif
378485535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
378585535b8eSBarry Smith       row = im[i] - rstart;
378685535b8eSBarry Smith       for (j=0; j<n; j++) {
378785535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
378885535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
378985535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
379085535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
379185535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
379285535b8eSBarry Smith         } else { /* Here a copy is required */
379385535b8eSBarry Smith           if (roworiented) {
379485535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
379585535b8eSBarry Smith           } else {
379685535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
379785535b8eSBarry Smith           }
379885535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
379985535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
380085535b8eSBarry Smith               *barray++ = *value++;
380185535b8eSBarry Smith             }
380285535b8eSBarry Smith           }
380385535b8eSBarry Smith           barray -=bs2;
380485535b8eSBarry Smith         }
380585535b8eSBarry Smith 
380685535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
380785535b8eSBarry Smith           col  = in[j] - cstart;
38088ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
380926fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
381085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3811cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
381285535b8eSBarry Smith #endif
381385535b8eSBarry Smith         else {
381485535b8eSBarry Smith           if (mat->was_assembled) {
381585535b8eSBarry Smith             if (!baij->colmap) {
3816ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
381785535b8eSBarry Smith             }
381885535b8eSBarry Smith 
381985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
382085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
382185535b8eSBarry Smith             { PetscInt data;
382285535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3823e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
382485535b8eSBarry Smith             }
382585535b8eSBarry Smith #else
3826e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
382785535b8eSBarry Smith #endif
382885535b8eSBarry Smith #endif
382985535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
383085535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
383185535b8eSBarry Smith             col  = (col - 1)/bs;
383285535b8eSBarry Smith #else
383385535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
383485535b8eSBarry Smith #endif
383585535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3836ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
383785535b8eSBarry Smith               col  =  in[j];
383885535b8eSBarry Smith             }
383926fbe8dcSKarl Rupp           } else col = in[j];
38408ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
384185535b8eSBarry Smith         }
384285535b8eSBarry Smith       }
384385535b8eSBarry Smith     } else {
384485535b8eSBarry Smith       if (!baij->donotstash) {
384585535b8eSBarry Smith         if (roworiented) {
384685535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
384785535b8eSBarry Smith         } else {
384885535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
384985535b8eSBarry Smith         }
385085535b8eSBarry Smith       }
385185535b8eSBarry Smith     }
385285535b8eSBarry Smith   }
385385535b8eSBarry Smith 
385485535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
385585535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
385685535b8eSBarry Smith   PetscFunctionReturn(0);
385785535b8eSBarry Smith }
3858dfb205c3SBarry Smith 
3859dfb205c3SBarry Smith /*@
3860dfb205c3SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard
3861dfb205c3SBarry Smith          CSR format the local rows.
3862dfb205c3SBarry Smith 
3863dfb205c3SBarry Smith    Collective on MPI_Comm
3864dfb205c3SBarry Smith 
3865dfb205c3SBarry Smith    Input Parameters:
3866dfb205c3SBarry Smith +  comm - MPI communicator
3867dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3868dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3869dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3870dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3871dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3872dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3873dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3874dfb205c3SBarry Smith .   i - row indices
3875dfb205c3SBarry Smith .   j - column indices
3876dfb205c3SBarry Smith -   a - matrix values
3877dfb205c3SBarry Smith 
3878dfb205c3SBarry Smith    Output Parameter:
3879dfb205c3SBarry Smith .   mat - the matrix
3880dfb205c3SBarry Smith 
3881dfb205c3SBarry Smith    Level: intermediate
3882dfb205c3SBarry Smith 
3883dfb205c3SBarry Smith    Notes:
3884dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3885dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3886dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3887dfb205c3SBarry Smith 
38883adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
38893adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
38903adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
38913adadaf3SJed Brown      with column-major ordering within blocks.
38923adadaf3SJed Brown 
3893dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3894dfb205c3SBarry Smith 
3895dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
3896dfb205c3SBarry Smith 
3897dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
389869b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
3899dfb205c3SBarry Smith @*/
39007087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3901dfb205c3SBarry Smith {
3902dfb205c3SBarry Smith   PetscErrorCode ierr;
3903dfb205c3SBarry Smith 
3904dfb205c3SBarry Smith   PetscFunctionBegin;
3905f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
3906dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
3907dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
3908dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
3909dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
3910d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
3911dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
3912d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
3913dfb205c3SBarry Smith   PetscFunctionReturn(0);
3914dfb205c3SBarry Smith }
3915e561ad89SHong Zhang 
3916bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3917e561ad89SHong Zhang {
3918e561ad89SHong Zhang   PetscErrorCode ierr;
3919bd153df0SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
3920bd153df0SHong Zhang   PetscInt       *indx;
3921bd153df0SHong Zhang   PetscScalar    *values;
3922e561ad89SHong Zhang 
3923e561ad89SHong Zhang   PetscFunctionBegin;
3924e561ad89SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
3925bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3926bd153df0SHong Zhang     Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inmat->data;
3927bd153df0SHong Zhang     PetscInt       *dnz,*onz,sum,mbs,Nbs;
3928bd153df0SHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
3929e561ad89SHong Zhang 
3930bd153df0SHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3931bd153df0SHong Zhang     mbs = m/bs; Nbs = N/cbs;
3932bd153df0SHong Zhang     if (n == PETSC_DECIDE) {
3933bd153df0SHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
3934bd153df0SHong Zhang     }
3935bd153df0SHong Zhang     /* Check sum(n) = Nbs */
3936b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
3937bd153df0SHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
3938bd153df0SHong Zhang 
3939bd153df0SHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
3940bd153df0SHong Zhang     rstart -= mbs;
3941e561ad89SHong Zhang 
3942647a6520SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
3943bd153df0SHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
3944bd153df0SHong Zhang     for (i=0; i<mbs; i++) {
3945647a6520SHong Zhang       ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
3946647a6520SHong Zhang       nnz = nnz/bs;
3947647a6520SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
3948647a6520SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
3949647a6520SHong Zhang       ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
3950e561ad89SHong Zhang     }
3951647a6520SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
3952e561ad89SHong Zhang 
3953e561ad89SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
3954bd153df0SHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
3955e561ad89SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
3956e561ad89SHong Zhang     ierr = MatSetType(*outmat,MATMPIBAIJ);CHKERRQ(ierr);
3957e561ad89SHong Zhang     ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
3958e561ad89SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
3959e561ad89SHong Zhang   }
3960e561ad89SHong Zhang 
3961bd153df0SHong Zhang   /* numeric phase */
3962647a6520SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
3963bd153df0SHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
3964e561ad89SHong Zhang 
3965e561ad89SHong Zhang   for (i=0; i<m; i++) {
3966e561ad89SHong Zhang     ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3967e561ad89SHong Zhang     Ii   = i + rstart;
3968bd153df0SHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
3969e561ad89SHong Zhang     ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
3970e561ad89SHong Zhang   }
3971bd153df0SHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3972bd153df0SHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3973e561ad89SHong Zhang   PetscFunctionReturn(0);
3974e561ad89SHong Zhang }
3975