1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 127843d17aSBarry Smith { 137843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 144e879edeSHong Zhang PetscInt i,*idxb = NULL,m = A->rmap->n,bs = A->cmap->bs; 154e879edeSHong Zhang PetscScalar *va,*vv; 164e879edeSHong Zhang Vec vB,vA; 174e879edeSHong Zhang const PetscScalar *vb; 187843d17aSBarry Smith 197843d17aSBarry Smith PetscFunctionBegin; 209566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vA)); 219566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A,vA,idx)); 224e879edeSHong Zhang 239566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA,&va)); 24985db425SBarry Smith if (idx) { 254e879edeSHong Zhang for (i=0; i<m; i++) { 2626fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2726fbe8dcSKarl Rupp } 28985db425SBarry Smith } 297843d17aSBarry Smith 309566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vB)); 319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&idxb)); 329566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B,vB,idxb)); 337843d17aSBarry Smith 349566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v,&vv)); 359566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB,&vb)); 364e879edeSHong Zhang for (i=0; i<m; i++) { 3726fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 384e879edeSHong Zhang vv[i] = vb[i]; 394e879edeSHong Zhang if (idx) idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs); 404e879edeSHong Zhang } else { 414e879edeSHong Zhang vv[i] = va[i]; 4243359b5eSHong Zhang if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs*a->garray[idxb[i]/bs] + (idxb[i] % bs)) 434e879edeSHong Zhang idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs); 4426fbe8dcSKarl Rupp } 457843d17aSBarry Smith } 469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA,&vv)); 479566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA,&va)); 489566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB,&vb)); 499566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 509566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 519566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 527843d17aSBarry Smith PetscFunctionReturn(0); 537843d17aSBarry Smith } 547843d17aSBarry Smith 557087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 567fc3c18eSBarry Smith { 577fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 587fc3c18eSBarry Smith 597fc3c18eSBarry Smith PetscFunctionBegin; 609566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 619566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 627fc3c18eSBarry Smith PetscFunctionReturn(0); 637fc3c18eSBarry Smith } 647fc3c18eSBarry Smith 657087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 667fc3c18eSBarry Smith { 677fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 687fc3c18eSBarry Smith 697fc3c18eSBarry Smith PetscFunctionBegin; 709566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 719566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 727fc3c18eSBarry Smith PetscFunctionReturn(0); 737fc3c18eSBarry Smith } 747fc3c18eSBarry Smith 75537820f0SBarry Smith /* 76537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7757b952d6SSatish Balay number to the local number in the off-diagonal part of the local 78e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7957b952d6SSatish Balay length of colmap equals the global matrix length. 8057b952d6SSatish Balay */ 81ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8257b952d6SSatish Balay { 8357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 8457b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 85d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8657b952d6SSatish Balay 87d64ed03dSBarry Smith PetscFunctionBegin; 88aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 899566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap)); 9048e59246SSatish Balay for (i=0; i<nbs; i++) { 919566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES)); 9248e59246SSatish Balay } 9348e59246SSatish Balay #else 949566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs+1,&baij->colmap)); 959566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt))); 96928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9748e59246SSatish Balay #endif 983a40ed3dSBarry Smith PetscFunctionReturn(0); 9957b952d6SSatish Balay } 10057b952d6SSatish Balay 101d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 10280c1aa95SSatish Balay { \ 10380c1aa95SSatish Balay brow = row/bs; \ 10480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 105ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10680c1aa95SSatish Balay bcol = col/bs; \ 10780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 108ab26458aSBarry Smith low = 0; high = nrow; \ 109ab26458aSBarry Smith while (high-low > 3) { \ 110ab26458aSBarry Smith t = (low+high)/2; \ 111ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 112ab26458aSBarry Smith else low = t; \ 113ab26458aSBarry Smith } \ 114ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 118eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 119eada6651SSatish Balay else *bap = value; \ 120ac7a638eSSatish Balay goto a_noinsert; \ 12180c1aa95SSatish Balay } \ 12280c1aa95SSatish Balay } \ 12389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1245f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 125fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12680c1aa95SSatish Balay N = nrow++ - 1; \ 12780c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1289566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\ 1299566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \ 1309566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 13180c1aa95SSatish Balay rp[_i] = bcol; \ 13280c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 133ac7a638eSSatish Balay a_noinsert:; \ 13480c1aa95SSatish Balay ailen[brow] = nrow; \ 13580c1aa95SSatish Balay } 13657b952d6SSatish Balay 137d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 138ac7a638eSSatish Balay { \ 139ac7a638eSSatish Balay brow = row/bs; \ 140ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 141ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 142ac7a638eSSatish Balay bcol = col/bs; \ 143ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 144ac7a638eSSatish Balay low = 0; high = nrow; \ 145ac7a638eSSatish Balay while (high-low > 3) { \ 146ac7a638eSSatish Balay t = (low+high)/2; \ 147ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 148ac7a638eSSatish Balay else low = t; \ 149ac7a638eSSatish Balay } \ 150ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 151ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 152ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 153ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 154ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 155ac7a638eSSatish Balay else *bap = value; \ 156ac7a638eSSatish Balay goto b_noinsert; \ 157ac7a638eSSatish Balay } \ 158ac7a638eSSatish Balay } \ 15989280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 1605f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 161fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 162ac7a638eSSatish Balay N = nrow++ - 1; \ 163ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 1649566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\ 1659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1)));\ 1669566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap+bs2*_i,bs2)); \ 167ac7a638eSSatish Balay rp[_i] = bcol; \ 168ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 169ac7a638eSSatish Balay b_noinsert:; \ 170ac7a638eSSatish Balay bilen[brow] = nrow; \ 171ac7a638eSSatish Balay } 172ac7a638eSSatish Balay 173b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 17457b952d6SSatish Balay { 17557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 17693fea6afSBarry Smith MatScalar value; 177ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 178b24ad042SBarry Smith PetscInt i,j,row,col; 179d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 180d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 181d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 18257b952d6SSatish Balay 183eada6651SSatish Balay /* Some Variables required in the macro */ 18480c1aa95SSatish Balay Mat A = baij->A; 18580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 186b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1873eda8832SBarry Smith MatScalar *aa =a->a; 188ac7a638eSSatish Balay 189ac7a638eSSatish Balay Mat B = baij->B; 190ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 191b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 1923eda8832SBarry Smith MatScalar *ba =b->a; 193ac7a638eSSatish Balay 194b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 195b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 1963eda8832SBarry Smith MatScalar *ap,*bap; 19780c1aa95SSatish Balay 198d64ed03dSBarry Smith PetscFunctionBegin; 19957b952d6SSatish Balay for (i=0; i<m; i++) { 2005ef9f2a5SBarry Smith if (im[i] < 0) continue; 2015f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 20257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 20357b952d6SSatish Balay row = im[i] - rstart_orig; 20457b952d6SSatish Balay for (j=0; j<n; j++) { 20557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 20657b952d6SSatish Balay col = in[j] - cstart_orig; 207db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 208db4deed7SKarl Rupp else value = v[i+j*m]; 209d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 21073959e64SBarry Smith } else if (in[j] < 0) continue; 2115f80ce2aSJacob Faibussowitsch else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1); 2129245e749SBarry Smith else { 21357b952d6SSatish Balay if (mat->was_assembled) { 214905e6a2fSBarry Smith if (!baij->colmap) { 2159566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 216905e6a2fSBarry Smith } 217aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2189566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col)); 219bba1ac68SSatish Balay col = col - 1; 22048e59246SSatish Balay #else 221bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 22248e59246SSatish Balay #endif 223c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 2249566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2258295de27SSatish Balay col = in[j]; 2269bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2279bf004c3SSatish Balay B = baij->B; 2289bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2299bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2309bf004c3SSatish Balay ba =b->a; 2315f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 232c9ef50b2SBarry Smith else col += in[j]%bs; 2338295de27SSatish Balay } else col = in[j]; 234db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 235db4deed7SKarl Rupp else value = v[i+j*m]; 236d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 2379566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 23857b952d6SSatish Balay } 23957b952d6SSatish Balay } 240d64ed03dSBarry Smith } else { 2415f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 24290f02eecSBarry Smith if (!baij->donotstash) { 2435080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 244ff2fd236SBarry Smith if (roworiented) { 2459566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE)); 246ff2fd236SBarry Smith } else { 2479566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE)); 24857b952d6SSatish Balay } 24957b952d6SSatish Balay } 25057b952d6SSatish Balay } 25190f02eecSBarry Smith } 2523a40ed3dSBarry Smith PetscFunctionReturn(0); 25357b952d6SSatish Balay } 25457b952d6SSatish Balay 2559fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 256880c6e6aSBarry Smith { 257880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2588ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 259880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 2608ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 261880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 262880c6e6aSBarry Smith const PetscScalar *value = v; 263880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 264880c6e6aSBarry Smith 265880c6e6aSBarry Smith PetscFunctionBegin; 266880c6e6aSBarry Smith rp = aj + ai[row]; 267880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 268880c6e6aSBarry Smith rmax = imax[row]; 269880c6e6aSBarry Smith nrow = ailen[row]; 2708ab52850SBarry Smith value = v; 2718ab52850SBarry Smith low = 0; 2728ab52850SBarry Smith high = nrow; 273880c6e6aSBarry Smith while (high-low > 7) { 274880c6e6aSBarry Smith t = (low+high)/2; 275880c6e6aSBarry Smith if (rp[t] > col) high = t; 276880c6e6aSBarry Smith else low = t; 277880c6e6aSBarry Smith } 278880c6e6aSBarry Smith for (i=low; i<high; i++) { 279880c6e6aSBarry Smith if (rp[i] > col) break; 280880c6e6aSBarry Smith if (rp[i] == col) { 281880c6e6aSBarry Smith bap = ap + bs2*i; 282880c6e6aSBarry Smith if (roworiented) { 283880c6e6aSBarry Smith if (is == ADD_VALUES) { 2848ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 285880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 286880c6e6aSBarry Smith bap[jj] += *value++; 287880c6e6aSBarry Smith } 288880c6e6aSBarry Smith } 289880c6e6aSBarry Smith } else { 2908ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 291880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 292880c6e6aSBarry Smith bap[jj] = *value++; 293880c6e6aSBarry Smith } 294880c6e6aSBarry Smith } 295880c6e6aSBarry Smith } 296880c6e6aSBarry Smith } else { 297880c6e6aSBarry Smith if (is == ADD_VALUES) { 2988ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 299880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 300880c6e6aSBarry Smith bap[jj] += value[jj]; 301880c6e6aSBarry Smith } 302880c6e6aSBarry Smith bap += bs; 303880c6e6aSBarry Smith } 304880c6e6aSBarry Smith } else { 3058ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 306880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 307880c6e6aSBarry Smith bap[jj] = value[jj]; 308880c6e6aSBarry Smith } 309880c6e6aSBarry Smith bap += bs; 310880c6e6aSBarry Smith } 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith } 313880c6e6aSBarry Smith goto noinsert2; 314880c6e6aSBarry Smith } 315880c6e6aSBarry Smith } 316880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3175f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 318880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 319880c6e6aSBarry Smith N = nrow++ - 1; high++; 320880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3219566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1)); 3229566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1))); 323880c6e6aSBarry Smith rp[i] = col; 324880c6e6aSBarry Smith bap = ap + bs2*i; 325880c6e6aSBarry Smith if (roworiented) { 3268ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 327880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 328880c6e6aSBarry Smith bap[jj] = *value++; 329880c6e6aSBarry Smith } 330880c6e6aSBarry Smith } 331880c6e6aSBarry Smith } else { 3328ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 333880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 334880c6e6aSBarry Smith *bap++ = *value++; 335880c6e6aSBarry Smith } 336880c6e6aSBarry Smith } 337880c6e6aSBarry Smith } 338880c6e6aSBarry Smith noinsert2:; 339880c6e6aSBarry Smith ailen[row] = nrow; 340880c6e6aSBarry Smith PetscFunctionReturn(0); 341880c6e6aSBarry Smith } 342880c6e6aSBarry Smith 3438ab52850SBarry Smith /* 3448ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3458ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3468ab52850SBarry Smith */ 34797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 348ab26458aSBarry Smith { 349ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 350dd6ea824SBarry Smith const PetscScalar *value; 351f15d580aSBarry Smith MatScalar *barray = baij->barray; 352ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 353899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 354899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 355d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 356ab26458aSBarry Smith 357b16ae2b1SBarry Smith PetscFunctionBegin; 35830793edcSSatish Balay if (!barray) { 3599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 36082502324SSatish Balay baij->barray = barray; 36130793edcSSatish Balay } 36230793edcSSatish Balay 36326fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 36426fbe8dcSKarl Rupp else stepval = (m-1)*bs; 36526fbe8dcSKarl Rupp 366ab26458aSBarry Smith for (i=0; i<m; i++) { 3675ef9f2a5SBarry Smith if (im[i] < 0) continue; 3686bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 369ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 370ab26458aSBarry Smith row = im[i] - rstart; 371ab26458aSBarry Smith for (j=0; j<n; j++) { 37215b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 37315b57d14SSatish Balay if ((roworiented) && (n == 1)) { 374f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 37515b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 376f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 37715b57d14SSatish Balay } else { /* Here a copy is required */ 378ab26458aSBarry Smith if (roworiented) { 37953ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 380ab26458aSBarry Smith } else { 38153ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 382abef11f7SSatish Balay } 38353ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 38426fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 38553ef36baSBarry Smith barray += bs; 38647513183SBarry Smith } 38730793edcSSatish Balay barray -= bs2; 38815b57d14SSatish Balay } 389abef11f7SSatish Balay 390abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 391abef11f7SSatish Balay col = in[j] - cstart; 3929566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 39326fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 3946bdcaf15SBarry Smith else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 3959245e749SBarry Smith else { 396ab26458aSBarry Smith if (mat->was_assembled) { 397ab26458aSBarry Smith if (!baij->colmap) { 3989566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 399ab26458aSBarry Smith } 400a5eb4965SSatish Balay 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 402aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 403b24ad042SBarry Smith { PetscInt data; 4049566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 40508401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 406fa46199cSSatish Balay } 40748e59246SSatish Balay #else 40808401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 409a5eb4965SSatish Balay #endif 41048e59246SSatish Balay #endif 411aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4129566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 413fa46199cSSatish Balay col = (col - 1)/bs; 41448e59246SSatish Balay #else 415a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 41648e59246SSatish Balay #endif 4170e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 4189566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 419ab26458aSBarry Smith col = in[j]; 4205f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix",im[i],in[j]); 421db4deed7SKarl Rupp } else col = in[j]; 4229566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 423ab26458aSBarry Smith } 424ab26458aSBarry Smith } 425d64ed03dSBarry Smith } else { 4265f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 427ab26458aSBarry Smith if (!baij->donotstash) { 428ff2fd236SBarry Smith if (roworiented) { 4299566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 430ff2fd236SBarry Smith } else { 4319566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 432ff2fd236SBarry Smith } 433abef11f7SSatish Balay } 434ab26458aSBarry Smith } 435ab26458aSBarry Smith } 4363a40ed3dSBarry Smith PetscFunctionReturn(0); 437ab26458aSBarry Smith } 4386fa18ffdSBarry Smith 4390bdbc534SSatish Balay #define HASH_KEY 0.6180339887 440b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 441b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 442b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 44397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4440bdbc534SSatish Balay { 4450bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 446ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 447b24ad042SBarry Smith PetscInt i,j,row,col; 448d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 449d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 450d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 451329f5518SBarry Smith PetscReal tmp; 4523eda8832SBarry Smith MatScalar **HD = baij->hd,value; 453b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4540bdbc534SSatish Balay 4550bdbc534SSatish Balay PetscFunctionBegin; 4560bdbc534SSatish Balay for (i=0; i<m; i++) { 45776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 4585f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 4595f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1); 46076bd3646SJed Brown } 4610bdbc534SSatish Balay row = im[i]; 462c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4630bdbc534SSatish Balay for (j=0; j<n; j++) { 4640bdbc534SSatish Balay col = in[j]; 465db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 466db4deed7SKarl Rupp else value = v[i+j*m]; 467b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 468c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 469c2760754SSatish Balay h1 = HASH(size,key,tmp); 4700bdbc534SSatish Balay 471c2760754SSatish Balay idx = h1; 47276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 473187ce0cbSSatish Balay insert_ct++; 474187ce0cbSSatish Balay total_ct++; 475187ce0cbSSatish Balay if (HT[idx] != key) { 476187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 477187ce0cbSSatish Balay if (idx == size) { 478187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 4795f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 480187ce0cbSSatish Balay } 481187ce0cbSSatish Balay } 48276bd3646SJed Brown } else if (HT[idx] != key) { 483c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 484c2760754SSatish Balay if (idx == size) { 485c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 4865f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 487c2760754SSatish Balay } 488c2760754SSatish Balay } 489c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 490c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 491c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4920bdbc534SSatish Balay } 49326fbe8dcSKarl Rupp } else if (!baij->donotstash) { 494ff2fd236SBarry Smith if (roworiented) { 4959566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE)); 496ff2fd236SBarry Smith } else { 4979566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE)); 4980bdbc534SSatish Balay } 4990bdbc534SSatish Balay } 5000bdbc534SSatish Balay } 50176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 502abf3b562SBarry Smith baij->ht_total_ct += total_ct; 503abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 50476bd3646SJed Brown } 5050bdbc534SSatish Balay PetscFunctionReturn(0); 5060bdbc534SSatish Balay } 5070bdbc534SSatish Balay 50897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5090bdbc534SSatish Balay { 5100bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 511ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 512b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 513899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 514d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 515b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 516329f5518SBarry Smith PetscReal tmp; 5173eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 518dd6ea824SBarry Smith const PetscScalar *v_t,*value; 519b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5200bdbc534SSatish Balay 521d0a41580SSatish Balay PetscFunctionBegin; 52226fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 52326fbe8dcSKarl Rupp else stepval = (m-1)*bs; 52426fbe8dcSKarl Rupp 5250bdbc534SSatish Balay for (i=0; i<m; i++) { 52676bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5275f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %" PetscInt_FMT,im[i]); 5285f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 52976bd3646SJed Brown } 5300bdbc534SSatish Balay row = im[i]; 531ab715e2cSSatish Balay v_t = v + i*nbs2; 532c2760754SSatish Balay if (row >= rstart && row < rend) { 5330bdbc534SSatish Balay for (j=0; j<n; j++) { 5340bdbc534SSatish Balay col = in[j]; 5350bdbc534SSatish Balay 5360bdbc534SSatish Balay /* Look up into the Hash Table */ 537c2760754SSatish Balay key = row*Nbs+col+1; 538c2760754SSatish Balay h1 = HASH(size,key,tmp); 5390bdbc534SSatish Balay 540c2760754SSatish Balay idx = h1; 54176bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 542187ce0cbSSatish Balay total_ct++; 543187ce0cbSSatish Balay insert_ct++; 544187ce0cbSSatish Balay if (HT[idx] != key) { 545187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 546187ce0cbSSatish Balay if (idx == size) { 547187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 5485f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 549187ce0cbSSatish Balay } 550187ce0cbSSatish Balay } 55176bd3646SJed Brown } else if (HT[idx] != key) { 552c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 553c2760754SSatish Balay if (idx == size) { 554c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 5555f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 556c2760754SSatish Balay } 557c2760754SSatish Balay } 558c2760754SSatish Balay baij_a = HD[idx]; 5590bdbc534SSatish Balay if (roworiented) { 560c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 561187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 562187ce0cbSSatish Balay value = v_t; 563187ce0cbSSatish Balay v_t += bs; 564fef45726SSatish Balay if (addv == ADD_VALUES) { 565c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 566c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 567fef45726SSatish Balay baij_a[jj] += *value++; 568b4cc0f5aSSatish Balay } 569b4cc0f5aSSatish Balay } 570fef45726SSatish Balay } else { 571c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 572c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 573fef45726SSatish Balay baij_a[jj] = *value++; 574fef45726SSatish Balay } 575fef45726SSatish Balay } 576fef45726SSatish Balay } 5770bdbc534SSatish Balay } else { 5780bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 579fef45726SSatish Balay if (addv == ADD_VALUES) { 580b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5810bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 582fef45726SSatish Balay baij_a[jj] += *value++; 583fef45726SSatish Balay } 584fef45726SSatish Balay } 585fef45726SSatish Balay } else { 586fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 587fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 588fef45726SSatish Balay baij_a[jj] = *value++; 589fef45726SSatish Balay } 590b4cc0f5aSSatish Balay } 5910bdbc534SSatish Balay } 5920bdbc534SSatish Balay } 5930bdbc534SSatish Balay } 5940bdbc534SSatish Balay } else { 5950bdbc534SSatish Balay if (!baij->donotstash) { 5960bdbc534SSatish Balay if (roworiented) { 5979566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 5980bdbc534SSatish Balay } else { 5999566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 6000bdbc534SSatish Balay } 6010bdbc534SSatish Balay } 6020bdbc534SSatish Balay } 6030bdbc534SSatish Balay } 60476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 605abf3b562SBarry Smith baij->ht_total_ct += total_ct; 606abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 60776bd3646SJed Brown } 6080bdbc534SSatish Balay PetscFunctionReturn(0); 6090bdbc534SSatish Balay } 610133cdb44SSatish Balay 611b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 612d6de1c52SSatish Balay { 613d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 614d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 615d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 616d6de1c52SSatish Balay 617133cdb44SSatish Balay PetscFunctionBegin; 618d6de1c52SSatish Balay for (i=0; i<m; i++) { 61954c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 62054c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1); 621d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 622d6de1c52SSatish Balay row = idxm[i] - bsrstart; 623d6de1c52SSatish Balay for (j=0; j<n; j++) { 62454c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 62554c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1); 626d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 627d6de1c52SSatish Balay col = idxn[j] - bscstart; 6289566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j)); 629d64ed03dSBarry Smith } else { 630905e6a2fSBarry Smith if (!baij->colmap) { 6319566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 632905e6a2fSBarry Smith } 633aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6349566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data)); 635fa46199cSSatish Balay data--; 63648e59246SSatish Balay #else 63748e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 63848e59246SSatish Balay #endif 63948e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 640d9d09a02SSatish Balay else { 64148e59246SSatish Balay col = data + idxn[j]%bs; 6429566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j)); 643d6de1c52SSatish Balay } 644d6de1c52SSatish Balay } 645d6de1c52SSatish Balay } 646f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 647d6de1c52SSatish Balay } 6483a40ed3dSBarry Smith PetscFunctionReturn(0); 649d6de1c52SSatish Balay } 650d6de1c52SSatish Balay 651dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 652d6de1c52SSatish Balay { 653d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 654d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 655d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 656329f5518SBarry Smith PetscReal sum = 0.0; 6573eda8832SBarry Smith MatScalar *v; 658d6de1c52SSatish Balay 659d64ed03dSBarry Smith PetscFunctionBegin; 660d6de1c52SSatish Balay if (baij->size == 1) { 6619566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A,type,nrm)); 662d6de1c52SSatish Balay } else { 663d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 664d6de1c52SSatish Balay v = amat->a; 6658a62d963SHong Zhang nz = amat->nz*bs2; 6668a62d963SHong Zhang for (i=0; i<nz; i++) { 667329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 668d6de1c52SSatish Balay } 669d6de1c52SSatish Balay v = bmat->a; 6708a62d963SHong Zhang nz = bmat->nz*bs2; 6718a62d963SHong Zhang for (i=0; i<nz; i++) { 672329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 673d6de1c52SSatish Balay } 6741c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 6758f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6768a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6778a62d963SHong Zhang PetscReal *tmp,*tmp2; 678899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 6799566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N,&tmp)); 6809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N,&tmp2)); 6818a62d963SHong Zhang v = amat->a; jj = amat->j; 6828a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6838a62d963SHong Zhang for (j=0; j<bs; j++) { 6848a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6858a62d963SHong Zhang for (row=0; row<bs; row++) { 6868a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6878a62d963SHong Zhang } 6888a62d963SHong Zhang } 6898a62d963SHong Zhang jj++; 6908a62d963SHong Zhang } 6918a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6928a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6938a62d963SHong Zhang for (j=0; j<bs; j++) { 6948a62d963SHong Zhang col = bs*garray[*jj] + j; 6958a62d963SHong Zhang for (row=0; row<bs; row++) { 6968a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6978a62d963SHong Zhang } 6988a62d963SHong Zhang } 6998a62d963SHong Zhang jj++; 7008a62d963SHong Zhang } 7011c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat))); 7028a62d963SHong Zhang *nrm = 0.0; 703d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7048a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7058a62d963SHong Zhang } 7069566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7079566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7088a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 709577dd1f9SKris Buschelman PetscReal *sums; 7109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&sums)); 7118a62d963SHong Zhang sum = 0.0; 7128a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7138a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7148a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7158a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7168a62d963SHong Zhang for (i=0; i<nz; i++) { 7178a62d963SHong Zhang for (col=0; col<bs; col++) { 7188a62d963SHong Zhang for (row=0; row<bs; row++) { 7198a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7208a62d963SHong Zhang } 7218a62d963SHong Zhang } 7228a62d963SHong Zhang } 7238a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7248a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7258a62d963SHong Zhang for (i=0; i<nz; i++) { 7268a62d963SHong Zhang for (col=0; col<bs; col++) { 7278a62d963SHong Zhang for (row=0; row<bs; row++) { 7288a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7298a62d963SHong Zhang } 7308a62d963SHong Zhang } 7318a62d963SHong Zhang } 7328a62d963SHong Zhang for (row=0; row<bs; row++) { 7338a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7348a62d963SHong Zhang } 7358a62d963SHong Zhang } 7361c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat))); 7379566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 738ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 739d64ed03dSBarry Smith } 7403a40ed3dSBarry Smith PetscFunctionReturn(0); 741d6de1c52SSatish Balay } 74257b952d6SSatish Balay 743fef45726SSatish Balay /* 744fef45726SSatish Balay Creates the hash table, and sets the table 745fef45726SSatish Balay This table is created only once. 746fef45726SSatish Balay If new entried need to be added to the matrix 747fef45726SSatish Balay then the hash table has to be destroyed and 748fef45726SSatish Balay recreated. 749fef45726SSatish Balay */ 750dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 751596b8d2eSBarry Smith { 752596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 753596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 754596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 755b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 756fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 757899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 758b24ad042SBarry Smith PetscInt *HT,key; 7593eda8832SBarry Smith MatScalar **HD; 760329f5518SBarry Smith PetscReal tmp; 7616cf91177SBarry Smith #if defined(PETSC_USE_INFO) 762b24ad042SBarry Smith PetscInt ct=0,max=0; 7634a15367fSSatish Balay #endif 764fef45726SSatish Balay 765d64ed03dSBarry Smith PetscFunctionBegin; 766fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 767fef45726SSatish Balay 768fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 769fca92195SBarry Smith ht_size = baij->ht_size; 7700bdbc534SSatish Balay 771fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7729566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht)); 773b9e4cc15SSatish Balay HD = baij->hd; 774a07cd24cSSatish Balay HT = baij->ht; 775b9e4cc15SSatish Balay 776596b8d2eSBarry Smith /* Loop Over A */ 7770bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 778596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7790bdbc534SSatish Balay row = i+rstart; 7800bdbc534SSatish Balay col = aj[j]+cstart; 781596b8d2eSBarry Smith 782187ce0cbSSatish Balay key = row*Nbs + col + 1; 783fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 784fca92195SBarry Smith for (k=0; k<ht_size; k++) { 785fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 786fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 787fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 788596b8d2eSBarry Smith break; 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay } else { 791187ce0cbSSatish Balay ct++; 792187ce0cbSSatish Balay #endif 793596b8d2eSBarry Smith } 794187ce0cbSSatish Balay } 7956cf91177SBarry Smith #if defined(PETSC_USE_INFO) 796187ce0cbSSatish Balay if (k> max) max = k; 797187ce0cbSSatish Balay #endif 798596b8d2eSBarry Smith } 799596b8d2eSBarry Smith } 800596b8d2eSBarry Smith /* Loop Over B */ 8010bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 802596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8030bdbc534SSatish Balay row = i+rstart; 8040bdbc534SSatish Balay col = garray[bj[j]]; 805187ce0cbSSatish Balay key = row*Nbs + col + 1; 806fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 807fca92195SBarry Smith for (k=0; k<ht_size; k++) { 808fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 809fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 810fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 811596b8d2eSBarry Smith break; 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay } else { 814187ce0cbSSatish Balay ct++; 815187ce0cbSSatish Balay #endif 816596b8d2eSBarry Smith } 817187ce0cbSSatish Balay } 8186cf91177SBarry Smith #if defined(PETSC_USE_INFO) 819187ce0cbSSatish Balay if (k> max) max = k; 820187ce0cbSSatish Balay #endif 821596b8d2eSBarry Smith } 822596b8d2eSBarry Smith } 823596b8d2eSBarry Smith 824596b8d2eSBarry Smith /* Print Summary */ 8256cf91177SBarry Smith #if defined(PETSC_USE_INFO) 826fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 82726fbe8dcSKarl Rupp if (HT[i]) j++; 828c38d4ed2SBarry Smith } 8299566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Average Search = %5.2g,max search = %" PetscInt_FMT "\n",(!j) ? (double)0.0:(double)(((PetscReal)(ct+j))/(double)j),max)); 830187ce0cbSSatish Balay #endif 8313a40ed3dSBarry Smith PetscFunctionReturn(0); 832596b8d2eSBarry Smith } 83357b952d6SSatish Balay 834dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 835bbb85fb3SSatish Balay { 836bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 837b24ad042SBarry Smith PetscInt nstash,reallocs; 838bbb85fb3SSatish Balay 839bbb85fb3SSatish Balay PetscFunctionBegin; 84026fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 841bbb85fb3SSatish Balay 8429566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range)); 8439566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs)); 8449566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs)); 8459566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 8469566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs)); 8479566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs)); 848bbb85fb3SSatish Balay PetscFunctionReturn(0); 849bbb85fb3SSatish Balay } 850bbb85fb3SSatish Balay 851dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 852bbb85fb3SSatish Balay { 853bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 85491c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 855b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 856e44c0bd4SBarry Smith PetscInt *row,*col; 857ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 8583eda8832SBarry Smith MatScalar *val; 859b24ad042SBarry Smith PetscMPIInt n; 860bbb85fb3SSatish Balay 861bbb85fb3SSatish Balay PetscFunctionBegin; 8625fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8634cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 864a2d1c673SSatish Balay while (1) { 8659566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg)); 866a2d1c673SSatish Balay if (!flg) break; 867a2d1c673SSatish Balay 868bbb85fb3SSatish Balay for (i=0; i<n;) { 869bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 87026fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 87126fbe8dcSKarl Rupp if (row[j] != rstart) break; 87226fbe8dcSKarl Rupp } 873bbb85fb3SSatish Balay if (j < n) ncols = j-i; 874bbb85fb3SSatish Balay else ncols = n-i; 875bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8769566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode)); 877bbb85fb3SSatish Balay i = j; 878bbb85fb3SSatish Balay } 879bbb85fb3SSatish Balay } 8809566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 881a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 882a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 883a2d1c673SSatish Balay restore the original flags */ 884a2d1c673SSatish Balay r1 = baij->roworiented; 885a2d1c673SSatish Balay r2 = a->roworiented; 88691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 88726fbe8dcSKarl Rupp 8887c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8897c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89026fbe8dcSKarl Rupp 89191c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 892a2d1c673SSatish Balay while (1) { 8939566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg)); 894a2d1c673SSatish Balay if (!flg) break; 895a2d1c673SSatish Balay 896a2d1c673SSatish Balay for (i=0; i<n;) { 897a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 89826fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 89926fbe8dcSKarl Rupp if (row[j] != rstart) break; 90026fbe8dcSKarl Rupp } 901a2d1c673SSatish Balay if (j < n) ncols = j-i; 902a2d1c673SSatish Balay else ncols = n-i; 9039566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode)); 904a2d1c673SSatish Balay i = j; 905a2d1c673SSatish Balay } 906a2d1c673SSatish Balay } 9079566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 90826fbe8dcSKarl Rupp 909a2d1c673SSatish Balay baij->roworiented = r1; 910a2d1c673SSatish Balay a->roworiented = r2; 91126fbe8dcSKarl Rupp 91291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 913bbb85fb3SSatish Balay } 914bbb85fb3SSatish Balay 9159566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A,mode)); 9169566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A,mode)); 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9196aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 920bbb85fb3SSatish Balay /* 921bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 922bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 923bbb85fb3SSatish Balay */ 924bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9251c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat))); 926bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 9279566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 928bbb85fb3SSatish Balay } 929bbb85fb3SSatish Balay } 930bbb85fb3SSatish Balay 931bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 9329566063dSJacob Faibussowitsch PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 933bbb85fb3SSatish Balay } 9349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B,mode)); 9359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B,mode)); 936bbb85fb3SSatish Balay 9376cf91177SBarry Smith #if defined(PETSC_USE_INFO) 938bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9399566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct)); 94026fbe8dcSKarl Rupp 941bbb85fb3SSatish Balay baij->ht_total_ct = 0; 942bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 943bbb85fb3SSatish Balay } 944bbb85fb3SSatish Balay #endif 945bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9469566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact)); 94726fbe8dcSKarl Rupp 948bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 949bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 950bbb85fb3SSatish Balay } 951bbb85fb3SSatish Balay 9529566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 95326fbe8dcSKarl Rupp 954f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9554f9cfa9eSBarry Smith 9564f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9574f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 958e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 9591c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat))); 960e56f5c9eSBarry Smith } 961bbb85fb3SSatish Balay PetscFunctionReturn(0); 962bbb85fb3SSatish Balay } 96357b952d6SSatish Balay 9647da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 9659804daf3SBarry Smith #include <petscdraw.h> 9666849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96757b952d6SSatish Balay { 96857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9697da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 970d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 971ace3abfcSBarry Smith PetscBool iascii,isdraw; 972b0a32e0cSBarry Smith PetscViewer sviewer; 973f3ef73ceSBarry Smith PetscViewerFormat format; 97457b952d6SSatish Balay 975d64ed03dSBarry Smith PetscFunctionBegin; 9769566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 9779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 97832077d6dSBarry Smith if (iascii) { 9799566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer,&format)); 980456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9814e220ebcSLois Curfman McInnes MatInfo info; 9829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank)); 9839566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat,MAT_LOCAL,&info)); 9849566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9859566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", 9865f80ce2aSJacob Faibussowitsch rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory)); 9879566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info)); 9889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 9899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info)); 9909566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used)); 9919566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9939566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n")); 9949566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx,viewer)); 9953a40ed3dSBarry Smith PetscFunctionReturn(0); 996fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer," block size is %" PetscInt_FMT "\n",bs)); 9983a40ed3dSBarry Smith PetscFunctionReturn(0); 99904929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 100004929863SHong Zhang PetscFunctionReturn(0); 100157b952d6SSatish Balay } 100257b952d6SSatish Balay } 100357b952d6SSatish Balay 10040f5bd95cSBarry Smith if (isdraw) { 1005b0a32e0cSBarry Smith PetscDraw draw; 1006ace3abfcSBarry Smith PetscBool isnull; 10079566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw)); 10089566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw,&isnull)); 100945f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 101057b952d6SSatish Balay } 101157b952d6SSatish Balay 10127da1fb6eSBarry Smith { 101357b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101457b952d6SSatish Balay Mat A; 101557b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1016d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10173eda8832SBarry Smith MatScalar *a; 10183e219373SBarry Smith const char *matname; 101957b952d6SSatish Balay 1020f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1021f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10229566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A)); 1023dd400576SPatrick Sanan if (rank == 0) { 10249566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,M,N,M,N)); 1025d64ed03dSBarry Smith } else { 10269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A,0,0,M,N)); 102757b952d6SSatish Balay } 10289566063dSJacob Faibussowitsch PetscCall(MatSetType(A,MATMPIBAIJ)); 10299566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL)); 10309566063dSJacob Faibussowitsch PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE)); 10319566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A)); 103257b952d6SSatish Balay 103357b952d6SSatish Balay /* copy over the A part */ 103457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 10369566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 103757b952d6SSatish Balay 103857b952d6SSatish Balay for (i=0; i<mbs; i++) { 1039899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104026fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 104157b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1042899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 104357b952d6SSatish Balay for (k=0; k<bs; k++) { 10449566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 1045cee3aa6bSSatish Balay col++; a += bs; 104657b952d6SSatish Balay } 104757b952d6SSatish Balay } 104857b952d6SSatish Balay } 104957b952d6SSatish Balay /* copy over the B part */ 105057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 105157b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 105257b952d6SSatish Balay for (i=0; i<mbs; i++) { 1053899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 105426fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 105557b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105657b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105757b952d6SSatish Balay for (k=0; k<bs; k++) { 10589566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES)); 1059cee3aa6bSSatish Balay col++; a += bs; 106057b952d6SSatish Balay } 106157b952d6SSatish Balay } 106257b952d6SSatish Balay } 10639566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10649566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 10659566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 106655843e3eSBarry Smith /* 106755843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1068b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106955843e3eSBarry Smith */ 10709566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 10719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat,&matname)); 1072dd400576SPatrick Sanan if (rank == 0) { 10739566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname)); 10749566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer)); 107557b952d6SSatish Balay } 10769566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer)); 10779566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10789566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 107957b952d6SSatish Balay } 10803a40ed3dSBarry Smith PetscFunctionReturn(0); 108157b952d6SSatish Balay } 108257b952d6SSatish Balay 1083618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1084b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1085660746e0SBarry Smith { 1086b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 1087b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)aij->A->data; 1088b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)aij->B->data; 1089b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1090b51a4376SLisandro Dalcin PetscInt header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l; 1091b51a4376SLisandro Dalcin PetscInt *rowlens,*colidxs; 1092b51a4376SLisandro Dalcin PetscScalar *matvals; 1093660746e0SBarry Smith 1094660746e0SBarry Smith PetscFunctionBegin; 10959566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1096b51a4376SLisandro Dalcin 1097b51a4376SLisandro Dalcin M = mat->rmap->N; 1098b51a4376SLisandro Dalcin N = mat->cmap->N; 1099b51a4376SLisandro Dalcin m = mat->rmap->n; 1100b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1101b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1102b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1103b51a4376SLisandro Dalcin nz = bs*bs*(A->nz + B->nz); 1104b51a4376SLisandro Dalcin 1105b51a4376SLisandro Dalcin /* write matrix header */ 1106660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1107b51a4376SLisandro Dalcin header[1] = M; header[2] = N; header[3] = nz; 11089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat))); 11099566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT)); 1110660746e0SBarry Smith 1111b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11129566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m,&rowlens)); 1113b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) 1114b51a4376SLisandro Dalcin for (j=0; j<bs; j++) 1115b51a4376SLisandro Dalcin rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]); 11169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT)); 11179566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1118660746e0SBarry Smith 1119b51a4376SLisandro Dalcin /* fill in and store column indices */ 11209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&colidxs)); 1121b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1122b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1123b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1124b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1125b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1126b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1127660746e0SBarry Smith } 1128b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1129b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1130b51a4376SLisandro Dalcin colidxs[cnt++] = bs*A->j[ja] + l + cs; 1131b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1132b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1133b51a4376SLisandro Dalcin colidxs[cnt++] = bs*garray[B->j[jb]] + l; 1134660746e0SBarry Smith } 1135660746e0SBarry Smith } 11365f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz); 11379566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT)); 11389566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1139660746e0SBarry Smith 1140b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz,&matvals)); 1142b51a4376SLisandro Dalcin for (cnt=0, i=0; i<A->mbs; i++) { 1143b51a4376SLisandro Dalcin for (k=0; k<bs; k++) { 1144b51a4376SLisandro Dalcin for (jb=B->i[i]; jb<B->i[i+1]; jb++) { 1145b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs/bs) break; 1146b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1147b51a4376SLisandro Dalcin matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1148660746e0SBarry Smith } 1149b51a4376SLisandro Dalcin for (ja=A->i[i]; ja<A->i[i+1]; ja++) 1150b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1151b51a4376SLisandro Dalcin matvals[cnt++] = A->a[bs*(bs*ja + l) + k]; 1152b51a4376SLisandro Dalcin for (; jb<B->i[i+1]; jb++) 1153b51a4376SLisandro Dalcin for (l=0; l<bs; l++) 1154d21b9a37SPierre Jolivet matvals[cnt++] = B->a[bs*(bs*jb + l) + k]; 1155660746e0SBarry Smith } 1156b51a4376SLisandro Dalcin } 11579566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR)); 11589566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1159660746e0SBarry Smith 1160b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 11619566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat,viewer)); 1162660746e0SBarry Smith PetscFunctionReturn(0); 1163660746e0SBarry Smith } 1164660746e0SBarry Smith 1165dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 116657b952d6SSatish Balay { 1167ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 116857b952d6SSatish Balay 1169d64ed03dSBarry Smith PetscFunctionBegin; 11709566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii)); 11719566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw)); 11729566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket)); 11739566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 1174660746e0SBarry Smith if (iascii || isdraw || issocket) { 11759566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer)); 1176*1baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat,viewer)); 11773a40ed3dSBarry Smith PetscFunctionReturn(0); 117857b952d6SSatish Balay } 117957b952d6SSatish Balay 1180dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 118179bdfe76SSatish Balay { 118279bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 118379bdfe76SSatish Balay 1184d64ed03dSBarry Smith PetscFunctionBegin; 1185aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1186c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N); 118779bdfe76SSatish Balay #endif 11889566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 11899566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 11909566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 11919566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 1192aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 11939566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 119448e59246SSatish Balay #else 11959566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 119648e59246SSatish Balay #endif 11979566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 11989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 11999566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 12009566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues,baij->rowindices)); 12019566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 12029566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->hd,baij->ht)); 12039566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 12049566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1205901853e0SKris Buschelman 12069566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL)); 12079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL)); 12089566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL)); 12099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL)); 12109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL)); 12119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL)); 12129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL)); 12139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL)); 12142e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiadj_C",NULL)); 12152e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiaij_C",NULL)); 12167ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL)); 12187ea3e4caSstefano_zampini #endif 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL)); 12203a40ed3dSBarry Smith PetscFunctionReturn(0); 122179bdfe76SSatish Balay } 122279bdfe76SSatish Balay 1223dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1224cee3aa6bSSatish Balay { 1225cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1226b24ad042SBarry Smith PetscInt nt; 1227cee3aa6bSSatish Balay 1228d64ed03dSBarry Smith PetscFunctionBegin; 12299566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx,&nt)); 12305f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 12319566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy,&nt)); 12325f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 12339566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12349566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A,xx,yy)); 12359566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12369566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy)); 12373a40ed3dSBarry Smith PetscFunctionReturn(0); 1238cee3aa6bSSatish Balay } 1239cee3aa6bSSatish Balay 1240dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1241cee3aa6bSSatish Balay { 1242cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1243d64ed03dSBarry Smith 1244d64ed03dSBarry Smith PetscFunctionBegin; 12459566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12469566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz)); 12479566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD)); 12489566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz)); 12493a40ed3dSBarry Smith PetscFunctionReturn(0); 1250cee3aa6bSSatish Balay } 1251cee3aa6bSSatish Balay 1252dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1253cee3aa6bSSatish Balay { 1254cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1255cee3aa6bSSatish Balay 1256d64ed03dSBarry Smith PetscFunctionBegin; 1257cee3aa6bSSatish Balay /* do nondiagonal part */ 12589566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 1259cee3aa6bSSatish Balay /* do local part */ 12609566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy)); 1261e4a140f6SJunchao Zhang /* add partial results together */ 12629566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 12639566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE)); 12643a40ed3dSBarry Smith PetscFunctionReturn(0); 1265cee3aa6bSSatish Balay } 1266cee3aa6bSSatish Balay 1267dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1268cee3aa6bSSatish Balay { 1269cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1270cee3aa6bSSatish Balay 1271d64ed03dSBarry Smith PetscFunctionBegin; 1272cee3aa6bSSatish Balay /* do nondiagonal part */ 12739566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec)); 1274cee3aa6bSSatish Balay /* do local part */ 12759566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz)); 1276e4a140f6SJunchao Zhang /* add partial results together */ 12779566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 12789566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE)); 12793a40ed3dSBarry Smith PetscFunctionReturn(0); 1280cee3aa6bSSatish Balay } 1281cee3aa6bSSatish Balay 1282cee3aa6bSSatish Balay /* 1283cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1284cee3aa6bSSatish Balay diagonal block 1285cee3aa6bSSatish Balay */ 1286dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1287cee3aa6bSSatish Balay { 1288d64ed03dSBarry Smith PetscFunctionBegin; 12895f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12909566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ*)A->data)->A,v)); 12913a40ed3dSBarry Smith PetscFunctionReturn(0); 1292cee3aa6bSSatish Balay } 1293cee3aa6bSSatish Balay 1294f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1295cee3aa6bSSatish Balay { 1296cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1297d64ed03dSBarry Smith 1298d64ed03dSBarry Smith PetscFunctionBegin; 12999566063dSJacob Faibussowitsch PetscCall(MatScale(a->A,aa)); 13009566063dSJacob Faibussowitsch PetscCall(MatScale(a->B,aa)); 13013a40ed3dSBarry Smith PetscFunctionReturn(0); 1302cee3aa6bSSatish Balay } 1303026e39d0SSatish Balay 1304b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1305acdf5bf4SSatish Balay { 1306acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 130787828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 1308d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1309d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1310899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1311acdf5bf4SSatish Balay 1312d64ed03dSBarry Smith PetscFunctionBegin; 13135f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 13145f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1315acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1316acdf5bf4SSatish Balay 1317acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1318acdf5bf4SSatish Balay /* 1319acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1320acdf5bf4SSatish Balay */ 1321acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1322b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1323bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1324acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 132526fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1326acdf5bf4SSatish Balay } 13279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices)); 1328acdf5bf4SSatish Balay } 1329d9d09a02SSatish Balay lrow = row - brstart; 1330acdf5bf4SSatish Balay 1331acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1332f4259b30SLisandro Dalcin if (!v) {pvA = NULL; pvB = NULL;} 1333f4259b30SLisandro Dalcin if (!idx) {pcA = NULL; if (!v) pcB = NULL;} 13349566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA)); 13359566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB)); 1336acdf5bf4SSatish Balay nztot = nzA + nzB; 1337acdf5bf4SSatish Balay 1338acdf5bf4SSatish Balay cmap = mat->garray; 1339acdf5bf4SSatish Balay if (v || idx) { 1340acdf5bf4SSatish Balay if (nztot) { 1341acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1342b24ad042SBarry Smith PetscInt imark = -1; 1343acdf5bf4SSatish Balay if (v) { 1344acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1345acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1346d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1347acdf5bf4SSatish Balay else break; 1348acdf5bf4SSatish Balay } 1349acdf5bf4SSatish Balay imark = i; 1350acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1351acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1352acdf5bf4SSatish Balay } 1353acdf5bf4SSatish Balay if (idx) { 1354acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1355acdf5bf4SSatish Balay if (imark > -1) { 1356acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1357bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1358acdf5bf4SSatish Balay } 1359acdf5bf4SSatish Balay } else { 1360acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 136126fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1362acdf5bf4SSatish Balay else break; 1363acdf5bf4SSatish Balay } 1364acdf5bf4SSatish Balay imark = i; 1365acdf5bf4SSatish Balay } 1366d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1367d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1368acdf5bf4SSatish Balay } 1369d64ed03dSBarry Smith } else { 1370f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1371f4259b30SLisandro Dalcin if (v) *v = NULL; 1372d212a18eSSatish Balay } 1373acdf5bf4SSatish Balay } 1374acdf5bf4SSatish Balay *nz = nztot; 13759566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA)); 13769566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB)); 13773a40ed3dSBarry Smith PetscFunctionReturn(0); 1378acdf5bf4SSatish Balay } 1379acdf5bf4SSatish Balay 1380b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1381acdf5bf4SSatish Balay { 1382acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1383d64ed03dSBarry Smith 1384d64ed03dSBarry Smith PetscFunctionBegin; 13855f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1386acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13873a40ed3dSBarry Smith PetscFunctionReturn(0); 1388acdf5bf4SSatish Balay } 1389acdf5bf4SSatish Balay 1390dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 139158667388SSatish Balay { 139258667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1393d64ed03dSBarry Smith 1394d64ed03dSBarry Smith PetscFunctionBegin; 13959566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13969566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 13973a40ed3dSBarry Smith PetscFunctionReturn(0); 139858667388SSatish Balay } 13990ac07820SSatish Balay 1400dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14010ac07820SSatish Balay { 14024e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14034e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 14043966268fSBarry Smith PetscLogDouble isend[5],irecv[5]; 14050ac07820SSatish Balay 1406d64ed03dSBarry Smith PetscFunctionBegin; 1407d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 140826fbe8dcSKarl Rupp 14099566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A,MAT_LOCAL,info)); 141026fbe8dcSKarl Rupp 14110e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1412de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 141326fbe8dcSKarl Rupp 14149566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B,MAT_LOCAL,info)); 141526fbe8dcSKarl Rupp 14160e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1417de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 141826fbe8dcSKarl Rupp 14190ac07820SSatish Balay if (flag == MAT_LOCAL) { 14204e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14214e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14224e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14234e220ebcSLois Curfman McInnes info->memory = isend[3]; 14244e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14250ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14261c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin))); 142726fbe8dcSKarl Rupp 14284e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14294e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14304e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14314e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14324e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14330ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14341c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin))); 143526fbe8dcSKarl Rupp 14364e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14374e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14384e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14394e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14404e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 144198921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14424e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14434e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14444e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14453a40ed3dSBarry Smith PetscFunctionReturn(0); 14460ac07820SSatish Balay } 14470ac07820SSatish Balay 1448ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 144958667388SSatish Balay { 145058667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 145158667388SSatish Balay 1452d64ed03dSBarry Smith PetscFunctionBegin; 145312c028f9SKris Buschelman switch (op) { 1454512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 145512c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 145628b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1457a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 145812c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 145943674050SBarry Smith MatCheckPreallocated(A,1); 14609566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14619566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 146212c028f9SKris Buschelman break; 146312c028f9SKris Buschelman case MAT_ROW_ORIENTED: 146443674050SBarry Smith MatCheckPreallocated(A,1); 14654e0d8c25SBarry Smith a->roworiented = flg; 146626fbe8dcSKarl Rupp 14679566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 14689566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B,op,flg)); 146912c028f9SKris Buschelman break; 14708c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1471071fcb05SBarry Smith case MAT_SORTED_FULL: 14729566063dSJacob Faibussowitsch PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op])); 147312c028f9SKris Buschelman break; 147412c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14754e0d8c25SBarry Smith a->donotstash = flg; 147612c028f9SKris Buschelman break; 147712c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14784e0d8c25SBarry Smith a->ht_flag = flg; 1479abf3b562SBarry Smith a->ht_fact = 1.39; 148012c028f9SKris Buschelman break; 148177e54ba9SKris Buschelman case MAT_SYMMETRIC: 148277e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14832188ac68SBarry Smith case MAT_HERMITIAN: 1484c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14852188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 148643674050SBarry Smith MatCheckPreallocated(A,1); 14879566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A,op,flg)); 148877e54ba9SKris Buschelman break; 148912c028f9SKris Buschelman default: 149098921bdaSJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1491d64ed03dSBarry Smith } 14923a40ed3dSBarry Smith PetscFunctionReturn(0); 149358667388SSatish Balay } 149458667388SSatish Balay 1495fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14960ac07820SSatish Balay { 14970ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14980ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14990ac07820SSatish Balay Mat B; 1500d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1501d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 15023eda8832SBarry Smith MatScalar *a; 15030ac07820SSatish Balay 1504d64ed03dSBarry Smith PetscFunctionBegin; 1505cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15069566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 15079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M)); 15089566063dSJacob Faibussowitsch PetscCall(MatSetType(B,((PetscObject)A)->type_name)); 15092e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15109566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL)); 1511fc4dec0aSBarry Smith } else { 1512fc4dec0aSBarry Smith B = *matout; 1513fc4dec0aSBarry Smith } 15140ac07820SSatish Balay 15150ac07820SSatish Balay /* copy over the A part */ 15160ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 15170ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs,&rvals)); 15190ac07820SSatish Balay 15200ac07820SSatish Balay for (i=0; i<mbs; i++) { 1521899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 152226fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15230ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1524899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 15250ac07820SSatish Balay for (k=0; k<bs; k++) { 15269566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES)); 152726fbe8dcSKarl Rupp 15280ac07820SSatish Balay col++; a += bs; 15290ac07820SSatish Balay } 15300ac07820SSatish Balay } 15310ac07820SSatish Balay } 15320ac07820SSatish Balay /* copy over the B part */ 15330ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 15340ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15350ac07820SSatish Balay for (i=0; i<mbs; i++) { 1536899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 153726fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 15380ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15390ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15400ac07820SSatish Balay for (k=0; k<bs; k++) { 15419566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES)); 154226fbe8dcSKarl Rupp col++; 154326fbe8dcSKarl Rupp a += bs; 15440ac07820SSatish Balay } 15450ac07820SSatish Balay } 15460ac07820SSatish Balay } 15479566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15489566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 15499566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 15500ac07820SSatish Balay 1551cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 155226fbe8dcSKarl Rupp else { 15539566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(A,&B)); 15540ac07820SSatish Balay } 15553a40ed3dSBarry Smith PetscFunctionReturn(0); 15560ac07820SSatish Balay } 15570e95ebc0SSatish Balay 1558dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15590e95ebc0SSatish Balay { 156036c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 156136c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1562b24ad042SBarry Smith PetscInt s1,s2,s3; 15630e95ebc0SSatish Balay 1564d64ed03dSBarry Smith PetscFunctionBegin; 15659566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&s2,&s3)); 156636c4a09eSSatish Balay if (rr) { 15679566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr,&s1)); 15685f80ce2aSJacob Faibussowitsch PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 156936c4a09eSSatish Balay /* Overlap communication with computation. */ 15709566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 157136c4a09eSSatish Balay } 15720e95ebc0SSatish Balay if (ll) { 15739566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll,&s1)); 15745f80ce2aSJacob Faibussowitsch PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 15759566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,ll,NULL)); 15760e95ebc0SSatish Balay } 157736c4a09eSSatish Balay /* scale the diagonal block */ 15789566063dSJacob Faibussowitsch PetscCall((*a->ops->diagonalscale)(a,ll,rr)); 157936c4a09eSSatish Balay 158036c4a09eSSatish Balay if (rr) { 158136c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD)); 15839566063dSJacob Faibussowitsch PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec)); 158436c4a09eSSatish Balay } 15853a40ed3dSBarry Smith PetscFunctionReturn(0); 15860e95ebc0SSatish Balay } 15870e95ebc0SSatish Balay 15882b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 15890ac07820SSatish Balay { 15900ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 159165a92638SMatthew G. Knepley PetscInt *lrows; 15926e520ac8SStefano Zampini PetscInt r, len; 159394342113SStefano Zampini PetscBool cong; 15940ac07820SSatish Balay 1595d64ed03dSBarry Smith PetscFunctionBegin; 15966e520ac8SStefano Zampini /* get locally owned rows */ 15979566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows)); 159897b48c8fSBarry Smith /* fix right hand side if needed */ 159997b48c8fSBarry Smith if (x && b) { 160065a92638SMatthew G. Knepley const PetscScalar *xx; 160165a92638SMatthew G. Knepley PetscScalar *bb; 160265a92638SMatthew G. Knepley 16039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x,&xx)); 16049566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 160565a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 16069566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x,&xx)); 16079566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 160897b48c8fSBarry Smith } 160997b48c8fSBarry Smith 16100ac07820SSatish Balay /* actually zap the local rows */ 161172dacd9aSBarry Smith /* 161272dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1613a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 161472dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 161572dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 161672dacd9aSBarry Smith 161772dacd9aSBarry Smith */ 16189c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16199566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL)); 16209566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A,&cong)); 162194342113SStefano Zampini if ((diag != 0.0) && cong) { 16229566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL)); 1623f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16249566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL)); 16255f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ*)l->A->data)->nonew,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1626512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 162765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 162865a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16299566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES)); 1630a07cd24cSSatish Balay } 16319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 16329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 16339c957beeSSatish Balay } else { 16349566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL)); 1635a07cd24cSSatish Balay } 16369566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16374f9cfa9eSBarry Smith 16384f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16394f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1640e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16411c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A))); 1642e56f5c9eSBarry Smith } 16433a40ed3dSBarry Smith PetscFunctionReturn(0); 16440ac07820SSatish Balay } 164572dacd9aSBarry Smith 16466f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 16476f0a72daSMatthew G. Knepley { 16486f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1649131c27b5Sprj- PetscMPIInt n = A->rmap->n,p = 0; 1650131c27b5Sprj- PetscInt i,j,k,r,len = 0,row,col,count; 16516f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 16526f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16536f0a72daSMatthew G. Knepley PetscSF sf; 16546f0a72daSMatthew G. Knepley const PetscScalar *xx; 16556f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 16566f0a72daSMatthew G. Knepley Vec xmask,lmask; 16576f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 16586f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16596f0a72daSMatthew G. Knepley PetscScalar *aa; 16606f0a72daSMatthew G. Knepley 16616f0a72daSMatthew G. Knepley PetscFunctionBegin; 16626f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16646f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16666f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16676f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16685f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")",idx,A->rmap->N); 16695ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16709566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap,idx,&p)); 16715ba17502SJed Brown } 16726f0a72daSMatthew G. Knepley rrows[r].rank = p; 16736f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16746f0a72daSMatthew G. Knepley } 16759566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) A), &sf)); 16769566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16776f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16789566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR)); 16799566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR)); 16809566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16816f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16826f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 16836f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16849566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A,len,lrows,diag,x,b)); 16856f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 16869566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A,&xmask,NULL)); 16879566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec,&lmask)); 16889566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask,&bb)); 16896f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 16909566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask,&bb)); 16919566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD)); 16929566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD)); 16939566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 16946f0a72daSMatthew G. Knepley if (x) { 16959566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD)); 16969566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD)); 16979566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec,&xx)); 16989566063dSJacob Faibussowitsch PetscCall(VecGetArray(b,&bb)); 16996f0a72daSMatthew G. Knepley } 17009566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask,&mask)); 17016f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17026f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17036f0a72daSMatthew G. Knepley row = lrows[i]; 17046f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 17056f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 17066f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17076f0a72daSMatthew G. Knepley aa[0] = 0.0; 17086f0a72daSMatthew G. Knepley aa += bs; 17096f0a72daSMatthew G. Knepley } 17106f0a72daSMatthew G. Knepley } 17116f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17126f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17136f0a72daSMatthew G. Knepley row = i/bs; 17146f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 17156f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17166f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 17176f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17186f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 171989ae1891SBarry Smith if (x) bb[i] -= aa[0]*xx[col]; 17206f0a72daSMatthew G. Knepley aa[0] = 0.0; 17216f0a72daSMatthew G. Knepley } 17226f0a72daSMatthew G. Knepley } 17236f0a72daSMatthew G. Knepley } 17246f0a72daSMatthew G. Knepley } 17256f0a72daSMatthew G. Knepley if (x) { 17269566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b,&bb)); 17279566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec,&xx)); 17286f0a72daSMatthew G. Knepley } 17299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask,&mask)); 17309566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17319566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17324f9cfa9eSBarry Smith 17334f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17344f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 17354f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17361c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A))); 17374f9cfa9eSBarry Smith } 17386f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17396f0a72daSMatthew G. Knepley } 17406f0a72daSMatthew G. Knepley 1741dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1742bb5a7306SBarry Smith { 1743bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1744d64ed03dSBarry Smith 1745d64ed03dSBarry Smith PetscFunctionBegin; 17469566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17473a40ed3dSBarry Smith PetscFunctionReturn(0); 1748bb5a7306SBarry Smith } 1749bb5a7306SBarry Smith 17506849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 17510ac07820SSatish Balay 1752ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 17537fc3c18eSBarry Smith { 17547fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17557fc3c18eSBarry Smith Mat a,b,c,d; 1756ace3abfcSBarry Smith PetscBool flg; 17577fc3c18eSBarry Smith 17587fc3c18eSBarry Smith PetscFunctionBegin; 17597fc3c18eSBarry Smith a = matA->A; b = matA->B; 17607fc3c18eSBarry Smith c = matB->A; d = matB->B; 17617fc3c18eSBarry Smith 17629566063dSJacob Faibussowitsch PetscCall(MatEqual(a,c,&flg)); 1763abc0a331SBarry Smith if (flg) { 17649566063dSJacob Faibussowitsch PetscCall(MatEqual(b,d,&flg)); 17657fc3c18eSBarry Smith } 17661c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A))); 17677fc3c18eSBarry Smith PetscFunctionReturn(0); 17687fc3c18eSBarry Smith } 17697fc3c18eSBarry Smith 17703c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17713c896bc6SHong Zhang { 17723c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 17733c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 17743c896bc6SHong Zhang 17753c896bc6SHong Zhang PetscFunctionBegin; 17763c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17773c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17789566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A,B,str)); 17793c896bc6SHong Zhang } else { 17809566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A,b->A,str)); 17819566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B,b->B,str)); 17823c896bc6SHong Zhang } 17839566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17843c896bc6SHong Zhang PetscFunctionReturn(0); 17853c896bc6SHong Zhang } 1786273d9f13SBarry Smith 17874994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 1788273d9f13SBarry Smith { 1789273d9f13SBarry Smith PetscFunctionBegin; 17909566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL)); 1791273d9f13SBarry Smith PetscFunctionReturn(0); 1792273d9f13SBarry Smith } 1793273d9f13SBarry Smith 17944de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 17954de5dceeSHong Zhang { 1796001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 17974de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 17984de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 17994de5dceeSHong Zhang 18004de5dceeSHong Zhang PetscFunctionBegin; 18019566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz)); 18024de5dceeSHong Zhang PetscFunctionReturn(0); 18034de5dceeSHong Zhang } 18044de5dceeSHong Zhang 18054fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 18064fe895cdSHong Zhang { 18074fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 18084fe895cdSHong Zhang PetscBLASInt bnz,one=1; 18094fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 1810b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs*Y->rmap->bs; 18114fe895cdSHong Zhang 18124fe895cdSHong Zhang PetscFunctionBegin; 18134fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18144fe895cdSHong Zhang PetscScalar alpha = a; 18154fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 18164fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 18179566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 18188b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18194fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 18204fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 18219566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz)); 18228b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 18239566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1824ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18259566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y,a,X,str)); 18264fe895cdSHong Zhang } else { 18274de5dceeSHong Zhang Mat B; 18284de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 18299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d)); 18309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o)); 18319566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B)); 18329566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name)); 18339566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N)); 18349566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B,Y,Y)); 18359566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIBAIJ)); 18369566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d)); 18379566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o)); 18389566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o)); 18394de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18409566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str)); 18419566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y,&B)); 18429566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18439566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18444fe895cdSHong Zhang } 18454fe895cdSHong Zhang PetscFunctionReturn(0); 18464fe895cdSHong Zhang } 18474fe895cdSHong Zhang 18482726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 18492726fb6dSPierre Jolivet { 18505f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18515f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18522726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 18532726fb6dSPierre Jolivet 18549566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18559566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18565f80ce2aSJacob Faibussowitsch } 18572726fb6dSPierre Jolivet PetscFunctionReturn(0); 18582726fb6dSPierre Jolivet } 18592726fb6dSPierre Jolivet 186099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 186199cafbc1SBarry Smith { 186299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 186399cafbc1SBarry Smith 186499cafbc1SBarry Smith PetscFunctionBegin; 18659566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18669566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 186799cafbc1SBarry Smith PetscFunctionReturn(0); 186899cafbc1SBarry Smith } 186999cafbc1SBarry Smith 187099cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 187199cafbc1SBarry Smith { 187299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 187399cafbc1SBarry Smith 187499cafbc1SBarry Smith PetscFunctionBegin; 18759566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18769566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 187799cafbc1SBarry Smith PetscFunctionReturn(0); 187899cafbc1SBarry Smith } 187999cafbc1SBarry Smith 18807dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18814aa3045dSJed Brown { 18824aa3045dSJed Brown IS iscol_local; 18834aa3045dSJed Brown PetscInt csize; 18844aa3045dSJed Brown 18854aa3045dSJed Brown PetscFunctionBegin; 18869566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol,&csize)); 1887b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18889566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local)); 18895f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1890b79d0421SJed Brown } else { 18919566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol,&iscol_local)); 1892b79d0421SJed Brown } 18939566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat)); 1894b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 18959566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local)); 18969566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1897b79d0421SJed Brown } 18984aa3045dSJed Brown PetscFunctionReturn(0); 18994aa3045dSJed Brown } 190017df9f7cSHong Zhang 190182094794SBarry Smith /* 190282094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 190382094794SBarry Smith in local and then by concatenating the local matrices the end result. 19047dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19058f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 190682094794SBarry Smith */ 19077dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 190882094794SBarry Smith { 190982094794SBarry Smith PetscMPIInt rank,size; 191082094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 1911c9ffca76SHong Zhang PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 191229dcf524SDmitry Karpeev Mat M,Mreuse; 191382094794SBarry Smith MatScalar *vwork,*aa; 1914ce94432eSBarry Smith MPI_Comm comm; 191529dcf524SDmitry Karpeev IS isrow_new, iscol_new; 191682094794SBarry Smith Mat_SeqBAIJ *aij; 191782094794SBarry Smith 191882094794SBarry Smith PetscFunctionBegin; 19199566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat,&comm)); 19209566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 19219566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 192229dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 192329dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19249566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new)); 19259566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new)); 192682094794SBarry Smith 192782094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19289566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse)); 19295f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 19309566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse)); 193182094794SBarry Smith } else { 19329566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse)); 193382094794SBarry Smith } 19349566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19359566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 193682094794SBarry Smith /* 193782094794SBarry Smith m - number of local rows 193882094794SBarry Smith n - number of columns (same on all processors) 193982094794SBarry Smith rstart - first row in new global matrix generated 194082094794SBarry Smith */ 19419566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat,&bs)); 19429566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse,&m,&n)); 194382094794SBarry Smith m = m/bs; 194482094794SBarry Smith n = n/bs; 194582094794SBarry Smith 194682094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 194782094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 194882094794SBarry Smith ii = aij->i; 194982094794SBarry Smith jj = aij->j; 195082094794SBarry Smith 195182094794SBarry Smith /* 195282094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 195382094794SBarry Smith portions of the matrix in order to do correct preallocation 195482094794SBarry Smith */ 195582094794SBarry Smith 195682094794SBarry Smith /* first get start and end of "diagonal" columns */ 195782094794SBarry Smith if (csize == PETSC_DECIDE) { 19589566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow,&mglobal)); 195982094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 196082094794SBarry Smith nlocal = m; 196182094794SBarry Smith } else { 196282094794SBarry Smith nlocal = n/size + ((n % size) > rank); 196382094794SBarry Smith } 196482094794SBarry Smith } else { 196582094794SBarry Smith nlocal = csize/bs; 196682094794SBarry Smith } 19679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm)); 196882094794SBarry Smith rstart = rend - nlocal; 1969aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT,rend,n); 197082094794SBarry Smith 197182094794SBarry Smith /* next, compute all the lengths */ 19729566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m+1,&dlens,m+1,&olens)); 197382094794SBarry Smith for (i=0; i<m; i++) { 197482094794SBarry Smith jend = ii[i+1] - ii[i]; 197582094794SBarry Smith olen = 0; 197682094794SBarry Smith dlen = 0; 197782094794SBarry Smith for (j=0; j<jend; j++) { 197882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 197982094794SBarry Smith else dlen++; 198082094794SBarry Smith jj++; 198182094794SBarry Smith } 198282094794SBarry Smith olens[i] = olen; 198382094794SBarry Smith dlens[i] = dlen; 198482094794SBarry Smith } 19859566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,&M)); 19869566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n)); 19879566063dSJacob Faibussowitsch PetscCall(MatSetType(M,((PetscObject)mat)->type_name)); 19889566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens)); 19899566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens)); 19909566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens,olens)); 199182094794SBarry Smith } else { 199282094794SBarry Smith PetscInt ml,nl; 199382094794SBarry Smith 199482094794SBarry Smith M = *newmat; 19959566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M,&ml,&nl)); 19965f80ce2aSJacob Faibussowitsch PetscCheck(ml == m,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 19979566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 199882094794SBarry Smith /* 199982094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 200082094794SBarry Smith rather than the slower MatSetValues(). 200182094794SBarry Smith */ 200282094794SBarry Smith M->was_assembled = PETSC_TRUE; 200382094794SBarry Smith M->assembled = PETSC_FALSE; 200482094794SBarry Smith } 20059566063dSJacob Faibussowitsch PetscCall(MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE)); 20069566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M,&rstart,&rend)); 200782094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 200882094794SBarry Smith ii = aij->i; 200982094794SBarry Smith jj = aij->j; 201082094794SBarry Smith aa = aij->a; 201182094794SBarry Smith for (i=0; i<m; i++) { 201282094794SBarry Smith row = rstart/bs + i; 201382094794SBarry Smith nz = ii[i+1] - ii[i]; 201482094794SBarry Smith cwork = jj; jj += nz; 201575f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 20169566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES)); 201782094794SBarry Smith } 201882094794SBarry Smith 20199566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY)); 20209566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY)); 202182094794SBarry Smith *newmat = M; 202282094794SBarry Smith 202382094794SBarry Smith /* save submatrix used in processor for next request */ 202482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20259566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse)); 20269566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 202782094794SBarry Smith } 202882094794SBarry Smith PetscFunctionReturn(0); 202982094794SBarry Smith } 203082094794SBarry Smith 203182094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 203282094794SBarry Smith { 203382094794SBarry Smith MPI_Comm comm,pcomm; 2034a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 203582094794SBarry Smith const PetscInt *rows; 2036dbf0e21dSBarry Smith PetscMPIInt size; 2037a0a83eb5SRémi Lacroix IS crowp,lcolp; 203882094794SBarry Smith 203982094794SBarry Smith PetscFunctionBegin; 20409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A,&comm)); 204182094794SBarry Smith /* make a collective version of 'rowp' */ 20429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp,&pcomm)); 204382094794SBarry Smith if (pcomm==comm) { 204482094794SBarry Smith crowp = rowp; 204582094794SBarry Smith } else { 20469566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp,&nrows)); 20479566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp,&rows)); 20489566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp)); 20499566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp,&rows)); 205082094794SBarry Smith } 20519566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2052a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20539566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp,&pcomm)); 20549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm,&size)); 2055dbf0e21dSBarry Smith if (size==1) { 205682094794SBarry Smith lcolp = colp; 205782094794SBarry Smith } else { 20589566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp,&lcolp)); 205982094794SBarry Smith } 20609566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 206175f6568bSJed Brown /* now we just get the submatrix */ 20629566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A,NULL,&clocal_size)); 20639566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B)); 2064a0a83eb5SRémi Lacroix /* clean up */ 2065a0a83eb5SRémi Lacroix if (pcomm!=comm) { 20669566063dSJacob Faibussowitsch PetscCall(ISDestroy(&crowp)); 2067a0a83eb5SRémi Lacroix } 2068dbf0e21dSBarry Smith if (size>1) { 20699566063dSJacob Faibussowitsch PetscCall(ISDestroy(&lcolp)); 207082094794SBarry Smith } 207182094794SBarry Smith PetscFunctionReturn(0); 207282094794SBarry Smith } 207382094794SBarry Smith 20747087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20758c7482ecSBarry Smith { 20768c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20778c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20788c7482ecSBarry Smith 20798c7482ecSBarry Smith PetscFunctionBegin; 208026fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 208126fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20828c7482ecSBarry Smith PetscFunctionReturn(0); 20838c7482ecSBarry Smith } 20848c7482ecSBarry Smith 2085d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2086f6d58c54SBarry Smith { 2087f6d58c54SBarry Smith Mat B; 2088f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2089f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2090f6d58c54SBarry Smith Mat_SeqAIJ *b; 2091f4259b30SLisandro Dalcin PetscMPIInt size,rank,*recvcounts = NULL,*displs = NULL; 2092f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2093f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2094f6d58c54SBarry Smith 2095f6d58c54SBarry Smith PetscFunctionBegin; 20969566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size)); 20979566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank)); 2098f6d58c54SBarry Smith 2099f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2100f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2101f6d58c54SBarry Smith */ 21029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N/bs,&lens)); 2103f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2104f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2105f6d58c54SBarry Smith } 21069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2*size,&recvcounts)); 2107f6d58c54SBarry Smith displs = recvcounts + size; 2108f6d58c54SBarry Smith for (i=0; i<size; i++) { 2109f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2110f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2111f6d58c54SBarry Smith } 21129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A))); 2113f6d58c54SBarry Smith /* --------------------------------------------------------------- 2114f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2115f6d58c54SBarry Smith */ 21169566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&B)); 21179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE)); 21189566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATSEQAIJ)); 21199566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,lens)); 2120f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2121f6d58c54SBarry Smith 2122f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2123f6d58c54SBarry Smith Copy my part of matrix column indices over 2124f6d58c54SBarry Smith */ 2125f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2126f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2127f6d58c54SBarry Smith a_jsendbuf = ad->j; 2128f6d58c54SBarry Smith b_jsendbuf = bd->j; 2129f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2130f6d58c54SBarry Smith cnt = 0; 2131f6d58c54SBarry Smith for (i=0; i<n; i++) { 2132f6d58c54SBarry Smith 2133f6d58c54SBarry Smith /* put in lower diagonal portion */ 2134f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2135f6d58c54SBarry Smith while (m > 0) { 2136f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2137f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2138f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2139f6d58c54SBarry Smith m--; 2140f6d58c54SBarry Smith } 2141f6d58c54SBarry Smith 2142f6d58c54SBarry Smith /* put in diagonal portion */ 2143f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2144f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2145f6d58c54SBarry Smith } 2146f6d58c54SBarry Smith 2147f6d58c54SBarry Smith /* put in upper diagonal portion */ 2148f6d58c54SBarry Smith while (m-- > 0) { 2149f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2150f6d58c54SBarry Smith } 2151f6d58c54SBarry Smith } 21525f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT,sendcount,cnt); 2153f6d58c54SBarry Smith 2154f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2155f6d58c54SBarry Smith Gather all column indices to all processors 2156f6d58c54SBarry Smith */ 2157f6d58c54SBarry Smith for (i=0; i<size; i++) { 2158f6d58c54SBarry Smith recvcounts[i] = 0; 2159f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2160f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2161f6d58c54SBarry Smith } 2162f6d58c54SBarry Smith } 2163f6d58c54SBarry Smith displs[0] = 0; 2164f6d58c54SBarry Smith for (i=1; i<size; i++) { 2165f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2166f6d58c54SBarry Smith } 21679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A))); 2168f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2169f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2170f6d58c54SBarry Smith */ 2171f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21729566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen,lens,A->rmap->N/bs)); 2173f6d58c54SBarry Smith /* set the b->i indices */ 2174f6d58c54SBarry Smith b->i[0] = 0; 2175f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2176f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2177f6d58c54SBarry Smith } 21789566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 21809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 21819566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2182f6d58c54SBarry Smith 2183*1baa6e33SBarry Smith if (A->symmetric) PetscCall(MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE)); 2184*1baa6e33SBarry Smith else if (A->hermitian) PetscCall(MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE)); 2185*1baa6e33SBarry Smith else if (A->structurally_symmetric) PetscCall(MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE)); 2186f6d58c54SBarry Smith *newmat = B; 2187f6d58c54SBarry Smith PetscFunctionReturn(0); 2188f6d58c54SBarry Smith } 2189f6d58c54SBarry Smith 2190b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2191b1a666ecSBarry Smith { 2192b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2193f4259b30SLisandro Dalcin Vec bb1 = NULL; 2194b1a666ecSBarry Smith 2195b1a666ecSBarry Smith PetscFunctionBegin; 2196b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21979566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2198b1a666ecSBarry Smith PetscFunctionReturn(0); 2199b1a666ecSBarry Smith } 2200b1a666ecSBarry Smith 22014e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 22029566063dSJacob Faibussowitsch PetscCall(VecDuplicate(bb,&bb1)); 22034e980039SJed Brown } 22044e980039SJed Brown 2205b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2206b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2208b1a666ecSBarry Smith its--; 2209b1a666ecSBarry Smith } 2210b1a666ecSBarry Smith 2211b1a666ecSBarry Smith while (its--) { 22129566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22139566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2214b1a666ecSBarry Smith 2215b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22169566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22179566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2218b1a666ecSBarry Smith 2219b1a666ecSBarry Smith /* local sweep */ 22209566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx)); 2221b1a666ecSBarry Smith } 2222b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2223b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22249566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2225b1a666ecSBarry Smith its--; 2226b1a666ecSBarry Smith } 2227b1a666ecSBarry Smith while (its--) { 22289566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22299566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2230b1a666ecSBarry Smith 2231b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22329566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22339566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2234b1a666ecSBarry Smith 2235b1a666ecSBarry Smith /* local sweep */ 22369566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx)); 2237b1a666ecSBarry Smith } 2238b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2239b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22409566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx)); 2241b1a666ecSBarry Smith its--; 2242b1a666ecSBarry Smith } 2243b1a666ecSBarry Smith while (its--) { 22449566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 22459566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD)); 2246b1a666ecSBarry Smith 2247b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22489566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec,-1.0)); 22499566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1)); 2250b1a666ecSBarry Smith 2251b1a666ecSBarry Smith /* local sweep */ 22529566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx)); 2253b1a666ecSBarry Smith } 2254ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2255b1a666ecSBarry Smith 22569566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2257b1a666ecSBarry Smith PetscFunctionReturn(0); 2258b1a666ecSBarry Smith } 2259b1a666ecSBarry Smith 2260857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A,PetscInt type,PetscReal *reductions) 226147f7623dSRémi Lacroix { 226247f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 2263a873a8cdSSam Reynolds PetscInt m,N,i,*garray = aij->garray; 226447f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 226547f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 226647f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 226747f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 226847f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 226947f7623dSRémi Lacroix PetscReal *work; 227047f7623dSRémi Lacroix 227147f7623dSRémi Lacroix PetscFunctionBegin; 22729566063dSJacob Faibussowitsch PetscCall(MatGetSize(A,&m,&N)); 22739566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N,&work)); 2274857cbf51SRichard Tran Mills if (type == NORM_2) { 227547f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 227647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 227747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 227847f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 227947f7623dSRémi Lacroix a_val++; 228047f7623dSRémi Lacroix } 228147f7623dSRémi Lacroix } 228247f7623dSRémi Lacroix } 228347f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 228447f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 228547f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 228647f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 228747f7623dSRémi Lacroix b_val++; 228847f7623dSRémi Lacroix } 228947f7623dSRémi Lacroix } 229047f7623dSRémi Lacroix } 2291857cbf51SRichard Tran Mills } else if (type == NORM_1) { 229247f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 229347f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 229447f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 229547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 229647f7623dSRémi Lacroix a_val++; 229747f7623dSRémi Lacroix } 229847f7623dSRémi Lacroix } 229947f7623dSRémi Lacroix } 230047f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 230147f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 230247f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 230347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 230447f7623dSRémi Lacroix b_val++; 230547f7623dSRémi Lacroix } 230647f7623dSRémi Lacroix } 230747f7623dSRémi Lacroix } 2308857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 230947f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 231047f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 231147f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 231247f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 231347f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 231447f7623dSRémi Lacroix a_val++; 231547f7623dSRémi Lacroix } 231647f7623dSRémi Lacroix } 231747f7623dSRémi Lacroix } 231847f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 231947f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 232047f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 232147f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 232247f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 232347f7623dSRémi Lacroix b_val++; 232447f7623dSRémi Lacroix } 232547f7623dSRémi Lacroix } 232647f7623dSRémi Lacroix } 2327857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2328a873a8cdSSam Reynolds for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 2329a873a8cdSSam Reynolds for (jb=0; jb<bs; jb++) { 2330a873a8cdSSam Reynolds for (ib=0; ib<bs; ib++) { 2331857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2332a873a8cdSSam Reynolds a_val++; 2333a873a8cdSSam Reynolds } 2334a873a8cdSSam Reynolds } 2335a873a8cdSSam Reynolds } 2336a873a8cdSSam Reynolds for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 2337a873a8cdSSam Reynolds for (jb=0; jb<bs; jb++) { 2338a873a8cdSSam Reynolds for (ib=0; ib<bs; ib++) { 2339857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2340a873a8cdSSam Reynolds b_val++; 2341a873a8cdSSam Reynolds } 2342a873a8cdSSam Reynolds } 2343a873a8cdSSam Reynolds } 2344857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2345857cbf51SRichard Tran Mills for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 2346857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 2347857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 2348857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2349857cbf51SRichard Tran Mills a_val++; 2350857cbf51SRichard Tran Mills } 2351857cbf51SRichard Tran Mills } 2352857cbf51SRichard Tran Mills } 2353857cbf51SRichard Tran Mills for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 2354857cbf51SRichard Tran Mills for (jb=0; jb<bs; jb++) { 2355857cbf51SRichard Tran Mills for (ib=0; ib<bs; ib++) { 2356857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2357857cbf51SRichard Tran Mills b_val++; 2358857cbf51SRichard Tran Mills } 2359857cbf51SRichard Tran Mills } 2360857cbf51SRichard Tran Mills } 2361857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type"); 2362857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A))); 236447f7623dSRémi Lacroix } else { 23651c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A))); 236647f7623dSRémi Lacroix } 23679566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2368857cbf51SRichard Tran Mills if (type == NORM_2) { 2369a873a8cdSSam Reynolds for (i=0; i<N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2370857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2371a873a8cdSSam Reynolds for (i=0; i<N; i++) reductions[i] /= m; 237247f7623dSRémi Lacroix } 237347f7623dSRémi Lacroix PetscFunctionReturn(0); 237447f7623dSRémi Lacroix } 237547f7623dSRémi Lacroix 2376713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2377bbead8a2SBarry Smith { 2378bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2379bbead8a2SBarry Smith 2380bbead8a2SBarry Smith PetscFunctionBegin; 23819566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A,values)); 23827b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23837b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23847b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2385bbead8a2SBarry Smith PetscFunctionReturn(0); 2386bbead8a2SBarry Smith } 2387bbead8a2SBarry Smith 23887d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 23897d68702bSBarry Smith { 23907d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 23916f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 23927d68702bSBarry Smith 23937d68702bSBarry Smith PetscFunctionBegin; 23946f33a894SBarry Smith if (!Y->preallocated) { 23959566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL)); 23966f33a894SBarry Smith } else if (!aij->nz) { 2397b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23989566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL)); 2399b83222d8SBarry Smith aij->nonew = nonew; 24007d68702bSBarry Smith } 24019566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y,a)); 24027d68702bSBarry Smith PetscFunctionReturn(0); 24037d68702bSBarry Smith } 24048c7482ecSBarry Smith 24053b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 24063b49f96aSBarry Smith { 24073b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 24083b49f96aSBarry Smith 24093b49f96aSBarry Smith PetscFunctionBegin; 24105f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 24119566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A,missing,d)); 24123b49f96aSBarry Smith if (d) { 24133b49f96aSBarry Smith PetscInt rstart; 24149566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A,&rstart,NULL)); 24153b49f96aSBarry Smith *d += rstart/A->rmap->bs; 24163b49f96aSBarry Smith 24173b49f96aSBarry Smith } 24183b49f96aSBarry Smith PetscFunctionReturn(0); 24193b49f96aSBarry Smith } 24203b49f96aSBarry Smith 2421a5b7ff6bSBarry Smith PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 2422a5b7ff6bSBarry Smith { 2423a5b7ff6bSBarry Smith PetscFunctionBegin; 2424a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 2425a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2426a5b7ff6bSBarry Smith } 2427a5b7ff6bSBarry Smith 242879bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24293964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2430cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2431cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2432cc2dc46cSBarry Smith MatMult_MPIBAIJ, 243397304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24347c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24357c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin NULL, 2438f4259b30SLisandro Dalcin NULL, 2439f4259b30SLisandro Dalcin /*10*/ NULL, 2440f4259b30SLisandro Dalcin NULL, 2441f4259b30SLisandro Dalcin NULL, 2442b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2443cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244497304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24457fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2446cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2447cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2448cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244997304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2450cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2451cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2452cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2453d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2454f4259b30SLisandro Dalcin NULL, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 2457f4259b30SLisandro Dalcin NULL, 24584994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2459f4259b30SLisandro Dalcin NULL, 2460f4259b30SLisandro Dalcin NULL, 2461a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2462f4259b30SLisandro Dalcin NULL, 2463d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin NULL, 2466f4259b30SLisandro Dalcin NULL, 2467f4259b30SLisandro Dalcin NULL, 2468d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24697dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2470cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2471cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24723c896bc6SHong Zhang MatCopy_MPIBAIJ, 2473f4259b30SLisandro Dalcin /*44*/ NULL, 2474cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24757d68702bSBarry Smith MatShift_MPIBAIJ, 2476f4259b30SLisandro Dalcin NULL, 24776f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2478f4259b30SLisandro Dalcin /*49*/ NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin NULL, 2481f4259b30SLisandro Dalcin NULL, 2482f4259b30SLisandro Dalcin NULL, 248393dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2484f4259b30SLisandro Dalcin NULL, 2485cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 248682094794SBarry Smith MatPermute_MPIBAIJ, 2487cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24887dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2489f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2490f14a1c24SBarry Smith MatView_MPIBAIJ, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin /*64*/ NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin NULL, 2498d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin /*74*/ NULL, 2504f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin /*79*/ NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 25125bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2513f4259b30SLisandro Dalcin /*84*/ NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin /*89*/ NULL, 2519f4259b30SLisandro Dalcin NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin /*94*/ NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 2527f4259b30SLisandro Dalcin NULL, 2528f4259b30SLisandro Dalcin /*99*/ NULL, 2529f4259b30SLisandro Dalcin NULL, 2530f4259b30SLisandro Dalcin NULL, 25312726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin /*104*/NULL, 253499cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25358c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin NULL, 2538f4259b30SLisandro Dalcin /*109*/NULL, 2539f4259b30SLisandro Dalcin NULL, 2540f4259b30SLisandro Dalcin NULL, 2541f4259b30SLisandro Dalcin NULL, 25423b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2543d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 2544f4259b30SLisandro Dalcin NULL, 25454683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2546f4259b30SLisandro Dalcin NULL, 2547f4259b30SLisandro Dalcin NULL, 2548f4259b30SLisandro Dalcin /*119*/NULL, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin NULL, 2552e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2553f4259b30SLisandro Dalcin /*124*/NULL, 2554a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25553964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2556f4259b30SLisandro Dalcin NULL, 2557f4259b30SLisandro Dalcin NULL, 2558f4259b30SLisandro Dalcin /*129*/ NULL, 2559f4259b30SLisandro Dalcin NULL, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin NULL, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin /*134*/ NULL, 2564f4259b30SLisandro Dalcin NULL, 2565f4259b30SLisandro Dalcin NULL, 2566f4259b30SLisandro Dalcin NULL, 2567f4259b30SLisandro Dalcin NULL, 256846533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2569f4259b30SLisandro Dalcin NULL, 2570f4259b30SLisandro Dalcin NULL, 2571bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2572f4259b30SLisandro Dalcin NULL, 2573d70f29a3SPierre Jolivet /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2574d70f29a3SPierre Jolivet NULL, 2575d70f29a3SPierre Jolivet NULL, 2576d70f29a3SPierre Jolivet NULL 25778c7482ecSBarry Smith }; 257879bdfe76SSatish Balay 2579cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*); 2580c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*); 2581d94109b8SHong Zhang 2582cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2583aac34f13SBarry Smith { 2584b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2585f4259b30SLisandro Dalcin PetscInt i,j,dlen,olen,nz,nz_max=0,*d_nnz=NULL,*o_nnz=NULL; 2586f4259b30SLisandro Dalcin const PetscInt *JJ =NULL; 2587f4259b30SLisandro Dalcin PetscScalar *values=NULL; 2588d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 25893bd0feecSPierre Jolivet PetscBool nooffprocentries; 2590aac34f13SBarry Smith 2591aac34f13SBarry Smith PetscFunctionBegin; 25929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap,bs)); 25939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap,bs)); 25949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25959566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25969566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2597d0f46423SBarry Smith m = B->rmap->n/bs; 2598d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2599d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2600d0f46423SBarry Smith cend = B->cmap->rend/bs; 2601b8d659d7SLisandro Dalcin 26025f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]); 26039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz)); 2604aac34f13SBarry Smith for (i=0; i<m; i++) { 2605cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 26065f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz); 2607b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 260837cd3c0dSBarry Smith dlen = 0; 260937cd3c0dSBarry Smith olen = 0; 2610cf12db73SBarry Smith JJ = jj + ii[i]; 2611b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 261237cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261337cd3c0dSBarry Smith else dlen++; 2614aac34f13SBarry Smith JJ++; 2615aac34f13SBarry Smith } 261637cd3c0dSBarry Smith d_nnz[i] = dlen; 261737cd3c0dSBarry Smith o_nnz[i] = olen; 2618aac34f13SBarry Smith } 26199566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz)); 26209566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 2621aac34f13SBarry Smith 2622b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2623b8d659d7SLisandro Dalcin if (!values) { 26249566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(bs*bs*nz_max,&values)); 2625b8d659d7SLisandro Dalcin } 2626b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2627b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2628cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2629cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2630bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2631cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 26329566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES)); 26333adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26343adadaf3SJed Brown PetscInt j; 26353adadaf3SJed Brown for (j=0; j<ncols; j++) { 26363adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 26379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES)); 26383adadaf3SJed Brown } 26393adadaf3SJed Brown } 2640aac34f13SBarry Smith } 2641aac34f13SBarry Smith 26429566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26433bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26443bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26459566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 26469566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 26473bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26483bd0feecSPierre Jolivet 26499566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE)); 2650aac34f13SBarry Smith PetscFunctionReturn(0); 2651aac34f13SBarry Smith } 2652aac34f13SBarry Smith 2653aac34f13SBarry Smith /*@C 2654664954b6SBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 2655aac34f13SBarry Smith 2656d083f849SBarry Smith Collective 2657aac34f13SBarry Smith 2658aac34f13SBarry Smith Input Parameters: 26591c4f3114SJed Brown + B - the matrix 2660dfb205c3SBarry Smith . bs - the block size 2661aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2662aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2663aac34f13SBarry Smith - v - optional values in the matrix 2664aac34f13SBarry Smith 2665664954b6SBarry Smith Level: advanced 2666aac34f13SBarry Smith 266795452b02SPatrick Sanan Notes: 266895452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26693adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26703adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26713adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26723adadaf3SJed Brown block column and the second index is over columns within a block. 26733adadaf3SJed Brown 2674664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2675664954b6SBarry Smith 2676db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2677aac34f13SBarry Smith @*/ 26787087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2679aac34f13SBarry Smith { 2680aac34f13SBarry Smith PetscFunctionBegin; 26816ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 26826ba663aaSJed Brown PetscValidType(B,1); 26836ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 2684cac4c232SBarry Smith PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v)); 2685aac34f13SBarry Smith PetscFunctionReturn(0); 2686aac34f13SBarry Smith } 2687aac34f13SBarry Smith 2688b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2689a23d5eceSKris Buschelman { 2690a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2691535b19f3SBarry Smith PetscInt i; 26925d2a9ed1SStefano Zampini PetscMPIInt size; 2693a23d5eceSKris Buschelman 2694a23d5eceSKris Buschelman PetscFunctionBegin; 26959566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B,PetscAbs(bs))); 26969566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26979566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26989566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs)); 2699899cda47SBarry Smith 2700a23d5eceSKris Buschelman if (d_nnz) { 2701d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 27025f80ce2aSJacob Faibussowitsch PetscCheck(d_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]); 2703a23d5eceSKris Buschelman } 2704a23d5eceSKris Buschelman } 2705a23d5eceSKris Buschelman if (o_nnz) { 2706d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 27075f80ce2aSJacob Faibussowitsch PetscCheck(o_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]); 2708a23d5eceSKris Buschelman } 2709a23d5eceSKris Buschelman } 2710a23d5eceSKris Buschelman 2711a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2712a23d5eceSKris Buschelman b->bs2 = bs*bs; 2713d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2714d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2715d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2716d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2717a23d5eceSKris Buschelman 2718a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2719d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2720a23d5eceSKris Buschelman } 2721d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2722d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2723d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2724d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2725a23d5eceSKris Buschelman 2726cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 27279566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 2728cb7b82ddSBarry Smith #else 27299566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2730cb7b82ddSBarry Smith #endif 27319566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27329566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27339566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2734cb7b82ddSBarry Smith 2735cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size)); 27379566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27389566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->B)); 27399566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0)); 27409566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B,MATSEQBAIJ)); 27419566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B)); 2742cb7b82ddSBarry Smith 2743526dfc15SBarry Smith if (!B->preallocated) { 27449566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF,&b->A)); 27459566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n)); 27469566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A,MATSEQBAIJ)); 27479566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A)); 27489566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash)); 2749526dfc15SBarry Smith } 2750a23d5eceSKris Buschelman 27519566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz)); 27529566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz)); 2753526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2754cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2755cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2756a23d5eceSKris Buschelman PetscFunctionReturn(0); 2757a23d5eceSKris Buschelman } 2758a23d5eceSKris Buschelman 27597087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 27607087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 27615bf65638SKris Buschelman 2762cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 276382094794SBarry Smith { 276482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 276582094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 276682094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 276782094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 276882094794SBarry Smith 276982094794SBarry Smith PetscFunctionBegin; 27709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M+1,&ii)); 277182094794SBarry Smith ii[0] = 0; 277282094794SBarry Smith for (i=0; i<M; i++) { 277308401ef6SPierre Jolivet PetscCheck((id[i+1] - id[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,id[i],id[i+1]); 277408401ef6SPierre Jolivet PetscCheck((io[i+1] - io[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,io[i],io[i+1]); 277582094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 27765ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27775ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 27785ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 27795ee9ba1cSJed Brown } 278082094794SBarry Smith } 27819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M],&jj)); 278282094794SBarry Smith cnt = 0; 278382094794SBarry Smith for (i=0; i<M; i++) { 278482094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 278582094794SBarry Smith if (garray[jo[j]] > rstart) break; 278682094794SBarry Smith jj[cnt++] = garray[jo[j]]; 278782094794SBarry Smith } 278882094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 27895ee9ba1cSJed Brown if (jd[k] != i) { 279082094794SBarry Smith jj[cnt++] = rstart + jd[k]; 279182094794SBarry Smith } 27925ee9ba1cSJed Brown } 279382094794SBarry Smith for (; j<io[i+1]; j++) { 279482094794SBarry Smith jj[cnt++] = garray[jo[j]]; 279582094794SBarry Smith } 279682094794SBarry Smith } 27979566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj)); 279882094794SBarry Smith PetscFunctionReturn(0); 279982094794SBarry Smith } 280082094794SBarry Smith 2801c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 280262471d69SBarry Smith 2803cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 2804b2573a8aSBarry Smith 2805cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 280662471d69SBarry Smith { 280762471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 280885a69837SSatish Balay Mat_MPIAIJ *b; 28095f80ce2aSJacob Faibussowitsch Mat B; 281062471d69SBarry Smith 281162471d69SBarry Smith PetscFunctionBegin; 28125f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 281362471d69SBarry Smith 28140f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28150f6d62edSLisandro Dalcin B = *newmat; 28160f6d62edSLisandro Dalcin } else { 28179566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B)); 28189566063dSJacob Faibussowitsch PetscCall(MatSetType(B,MATMPIAIJ)); 28199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N)); 28209566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs)); 28219566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B,0,NULL)); 28229566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL)); 28230f6d62edSLisandro Dalcin } 282462471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 282562471d69SBarry Smith 28260f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28279566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28289566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28290f6d62edSLisandro Dalcin } else { 28309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28319566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28329566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(A)); 28339566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28349566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 28369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 28370f6d62edSLisandro Dalcin } 28389566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 28399566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 28400f6d62edSLisandro Dalcin 2841511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28429566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A,&B)); 284362471d69SBarry Smith } else { 284462471d69SBarry Smith *newmat = B; 284562471d69SBarry Smith } 284662471d69SBarry Smith PetscFunctionReturn(0); 284762471d69SBarry Smith } 284862471d69SBarry Smith 28490bad9183SKris Buschelman /*MC 2850fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28510bad9183SKris Buschelman 28520bad9183SKris Buschelman Options Database Keys: 28538c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28548c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28556679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 285667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28570bad9183SKris Buschelman 28580bad9183SKris Buschelman Level: beginner 28590cd7f59aSBarry Smith 28600cd7f59aSBarry Smith Notes: 28610cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 28620cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 28630bad9183SKris Buschelman 2864db781477SPatrick Sanan .seealso: `MatCreateBAIJ` 28650bad9183SKris Buschelman M*/ 28660bad9183SKris Buschelman 2867cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 2868c0cdd4a1SDahai Guo 28698cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2870273d9f13SBarry Smith { 2871273d9f13SBarry Smith Mat_MPIBAIJ *b; 287294ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2873273d9f13SBarry Smith 2874273d9f13SBarry Smith PetscFunctionBegin; 28759566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B,&b)); 287682502324SSatish Balay B->data = (void*)b; 287782502324SSatish Balay 28789566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps))); 2879273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2880273d9f13SBarry Smith 2881273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank)); 28839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size)); 2884273d9f13SBarry Smith 2885273d9f13SBarry Smith /* build local table of row and column ownerships */ 28869566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size+1,&b->rangebs)); 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith /* build cache for off array entries formed */ 28899566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash)); 289026fbe8dcSKarl Rupp 2891273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28920298fd71SBarry Smith b->colmap = NULL; 28930298fd71SBarry Smith b->garray = NULL; 2894273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2895273d9f13SBarry Smith 2896273d9f13SBarry Smith /* stuff used in block assembly */ 2897f4259b30SLisandro Dalcin b->barray = NULL; 2898273d9f13SBarry Smith 2899273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2900f4259b30SLisandro Dalcin b->lvec = NULL; 2901f4259b30SLisandro Dalcin b->Mvctx = NULL; 2902273d9f13SBarry Smith 2903273d9f13SBarry Smith /* stuff for MatGetRow() */ 2904f4259b30SLisandro Dalcin b->rowindices = NULL; 2905f4259b30SLisandro Dalcin b->rowvalues = NULL; 2906273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2907273d9f13SBarry Smith 2908273d9f13SBarry Smith /* hash table stuff */ 2909f4259b30SLisandro Dalcin b->ht = NULL; 2910f4259b30SLisandro Dalcin b->hd = NULL; 2911273d9f13SBarry Smith b->ht_size = 0; 2912273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2913273d9f13SBarry Smith b->ht_fact = 0; 2914273d9f13SBarry Smith b->ht_total_ct = 0; 2915273d9f13SBarry Smith b->ht_insert_ct = 0; 2916273d9f13SBarry Smith 29177dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29187a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29197a868f3eSHong Zhang 29209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj)); 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ)); 29237ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE)); 29257ea3e4caSstefano_zampini #endif 29269566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ)); 29279566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ)); 29289566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ)); 29299566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29309566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ)); 29319566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ)); 29329566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS)); 29339566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ)); 293494ae4db5SBarry Smith 2935d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat"); 29369566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg)); 293794ae4db5SBarry Smith if (flg) { 293894ae4db5SBarry Smith PetscReal fact = 1.39; 29399566063dSJacob Faibussowitsch PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE)); 29409566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL)); 294194ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29429566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B,fact)); 29439566063dSJacob Faibussowitsch PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact)); 294494ae4db5SBarry Smith } 2945d0609cedSBarry Smith PetscOptionsEnd(); 2946273d9f13SBarry Smith PetscFunctionReturn(0); 2947273d9f13SBarry Smith } 2948273d9f13SBarry Smith 2949209238afSKris Buschelman /*MC 2950002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2951209238afSKris Buschelman 2952209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2953209238afSKris Buschelman and MATMPIBAIJ otherwise. 2954209238afSKris Buschelman 2955209238afSKris Buschelman Options Database Keys: 2956209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2957209238afSKris Buschelman 2958209238afSKris Buschelman Level: beginner 2959209238afSKris Buschelman 2960c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2961209238afSKris Buschelman M*/ 2962209238afSKris Buschelman 2963273d9f13SBarry Smith /*@C 2964aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2965273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2966273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2967273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2968273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2969273d9f13SBarry Smith 2970273d9f13SBarry Smith Collective on Mat 2971273d9f13SBarry Smith 2972273d9f13SBarry Smith Input Parameters: 29731c4f3114SJed Brown + B - the matrix 2974bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2975bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2976273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2977273d9f13SBarry Smith submatrix (same for all local rows) 2978273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2979273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29800298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 298195742e49SBarry Smith set it even if it is zero. 2982273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2983273d9f13SBarry Smith submatrix (same for all local rows). 2984273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2985273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 29860298fd71SBarry Smith each block row) or NULL. 2987273d9f13SBarry Smith 298849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2989273d9f13SBarry Smith 2990273d9f13SBarry Smith Options Database Keys: 29918c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 299267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2993273d9f13SBarry Smith 2994273d9f13SBarry Smith Notes: 2995273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2996273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2997273d9f13SBarry Smith 2998273d9f13SBarry Smith Storage Information: 2999273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3000273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3001273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3002273d9f13SBarry Smith local matrix (a rectangular submatrix). 3003273d9f13SBarry Smith 3004273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3005273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 30060298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3007273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3008273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3011273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3012273d9f13SBarry Smith 3013273d9f13SBarry Smith .vb 3014273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3015a4b1a0f6SJed Brown -------------------------- 3016273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3017273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3018273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3019a4b1a0f6SJed Brown -------------------------- 3020273d9f13SBarry Smith .ve 3021273d9f13SBarry Smith 3022273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3023273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3024273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3025273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3026273d9f13SBarry Smith 3027273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3028273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3029273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3030273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3031273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3032273d9f13SBarry Smith matrices. 3033273d9f13SBarry Smith 3034aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3035aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3036aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3037aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3038aa95bbe8SBarry Smith 3039273d9f13SBarry Smith Level: intermediate 3040273d9f13SBarry Smith 3041db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3042273d9f13SBarry Smith @*/ 30437087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3044273d9f13SBarry Smith { 3045273d9f13SBarry Smith PetscFunctionBegin; 30466ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 30476ba663aaSJed Brown PetscValidType(B,1); 30486ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 3049cac4c232SBarry Smith PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz)); 3050273d9f13SBarry Smith PetscFunctionReturn(0); 3051273d9f13SBarry Smith } 3052273d9f13SBarry Smith 305379bdfe76SSatish Balay /*@C 305469b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 305579bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 305679bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 305779bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 305879bdfe76SSatish Balay performance can be increased by more than a factor of 50. 305979bdfe76SSatish Balay 3060d083f849SBarry Smith Collective 3061db81eaa0SLois Curfman McInnes 306279bdfe76SSatish Balay Input Parameters: 3063db81eaa0SLois Curfman McInnes + comm - MPI communicator 3064bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3065bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 306679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 306792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 306992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 307092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 307192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3072be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3073be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 307447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 307579bdfe76SSatish Balay submatrix (same for all local rows) 307647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 307792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30780298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 307995742e49SBarry Smith and set it even if it is zero. 308047a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 308179bdfe76SSatish Balay submatrix (same for all local rows). 308247a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 308392e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30840298fd71SBarry Smith each block row) or NULL. 308579bdfe76SSatish Balay 308679bdfe76SSatish Balay Output Parameter: 308779bdfe76SSatish Balay . A - the matrix 308879bdfe76SSatish Balay 3089db81eaa0SLois Curfman McInnes Options Database Keys: 30908c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 309167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30923ffaccefSLois Curfman McInnes 3093175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3094f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3095175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3096175b88e8SBarry Smith 3097b259b22eSLois Curfman McInnes Notes: 309849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 309949a6f317SBarry Smith 310047a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 310147a75d0bSBarry Smith 310279bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 310379bdfe76SSatish Balay (possibly both). 310479bdfe76SSatish Balay 3105be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3106be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3107be79a94dSBarry Smith 310879bdfe76SSatish Balay Storage Information: 310979bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 311079bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311179bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311279bdfe76SSatish Balay local matrix (a rectangular submatrix). 311379bdfe76SSatish Balay 311479bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 311579bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 31160298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 311779bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 311879bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 311979bdfe76SSatish Balay 312079bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312179bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312279bdfe76SSatish Balay 3123db81eaa0SLois Curfman McInnes .vb 3124db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3125a4b1a0f6SJed Brown -------------------------- 3126db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3127db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3128db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3129a4b1a0f6SJed Brown -------------------------- 3130db81eaa0SLois Curfman McInnes .ve 313179bdfe76SSatish Balay 313279bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313379bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313479bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 313557b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 313679bdfe76SSatish Balay 3137d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3138d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 313979bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 314092e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 314192e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31426da5968aSLois Curfman McInnes matrices. 314379bdfe76SSatish Balay 3144027ccd11SLois Curfman McInnes Level: intermediate 3145027ccd11SLois Curfman McInnes 3146db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 314779bdfe76SSatish Balay @*/ 314869b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 314979bdfe76SSatish Balay { 3150b24ad042SBarry Smith PetscMPIInt size; 315179bdfe76SSatish Balay 3152d64ed03dSBarry Smith PetscFunctionBegin; 31539566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,A)); 31549566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A,m,n,M,N)); 31559566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm,&size)); 3156273d9f13SBarry Smith if (size > 1) { 31579566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATMPIBAIJ)); 31589566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz)); 3159273d9f13SBarry Smith } else { 31609566063dSJacob Faibussowitsch PetscCall(MatSetType(*A,MATSEQBAIJ)); 31619566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz)); 31623914022bSBarry Smith } 31633a40ed3dSBarry Smith PetscFunctionReturn(0); 316479bdfe76SSatish Balay } 3165026e39d0SSatish Balay 31666849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31670ac07820SSatish Balay { 31680ac07820SSatish Balay Mat mat; 31690ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3170b24ad042SBarry Smith PetscInt len=0; 31710ac07820SSatish Balay 3172d64ed03dSBarry Smith PetscFunctionBegin; 3173f4259b30SLisandro Dalcin *newmat = NULL; 31749566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat)); 31759566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N)); 31769566063dSJacob Faibussowitsch PetscCall(MatSetType(mat,((PetscObject)matin)->type_name)); 31777fff6886SHong Zhang 3178d5f3da31SBarry Smith mat->factortype = matin->factortype; 3179273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31800ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31817fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31827fff6886SHong Zhang 3183273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3184d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31850ac07820SSatish Balay a->bs2 = oldmat->bs2; 31860ac07820SSatish Balay a->mbs = oldmat->mbs; 31870ac07820SSatish Balay a->nbs = oldmat->nbs; 31880ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31890ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31900ac07820SSatish Balay 31919566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap)); 31929566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap)); 3193899cda47SBarry Smith 31940ac07820SSatish Balay a->size = oldmat->size; 31950ac07820SSatish Balay a->rank = oldmat->rank; 3196aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3197aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3198f4259b30SLisandro Dalcin a->rowindices = NULL; 3199f4259b30SLisandro Dalcin a->rowvalues = NULL; 32000ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3201f4259b30SLisandro Dalcin a->barray = NULL; 3202899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3203899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3204899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3205899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32060ac07820SSatish Balay 3207133cdb44SSatish Balay /* hash table stuff */ 3208f4259b30SLisandro Dalcin a->ht = NULL; 3209f4259b30SLisandro Dalcin a->hd = NULL; 3210133cdb44SSatish Balay a->ht_size = 0; 3211133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 321225fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3213133cdb44SSatish Balay a->ht_total_ct = 0; 3214133cdb44SSatish Balay a->ht_insert_ct = 0; 3215133cdb44SSatish Balay 32169566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1)); 32170ac07820SSatish Balay if (oldmat->colmap) { 3218aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 32199566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap)); 322048e59246SSatish Balay #else 32219566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs,&a->colmap)); 32229566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt))); 32239566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs)); 322448e59246SSatish Balay #endif 3225f4259b30SLisandro Dalcin } else a->colmap = NULL; 32264beb1cfeSHong Zhang 32270ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 32289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len,&a->garray)); 32299566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt))); 32309566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray,oldmat->garray,len)); 3231f4259b30SLisandro Dalcin } else a->garray = NULL; 32320ac07820SSatish Balay 32339566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash)); 32349566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec,&a->lvec)); 32359566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec)); 32369566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx)); 32379566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx)); 32387fff6886SHong Zhang 32399566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A)); 32409566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A)); 32419566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B)); 32429566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B)); 32439566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist)); 32440ac07820SSatish Balay *newmat = mat; 32453a40ed3dSBarry Smith PetscFunctionReturn(0); 32460ac07820SSatish Balay } 324757b952d6SSatish Balay 3248618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3249b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 3250b51a4376SLisandro Dalcin { 3251b51a4376SLisandro Dalcin PetscInt header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k; 3252b51a4376SLisandro Dalcin PetscInt *rowidxs,*colidxs,rs,cs,ce; 3253b51a4376SLisandro Dalcin PetscScalar *matvals; 3254b51a4376SLisandro Dalcin 3255b51a4376SLisandro Dalcin PetscFunctionBegin; 32569566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3257b51a4376SLisandro Dalcin 3258b51a4376SLisandro Dalcin /* read in matrix header */ 32599566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT)); 32605f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file"); 3261b51a4376SLisandro Dalcin M = header[1]; N = header[2]; nz = header[3]; 32625f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M); 32635f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N); 32645f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3265b51a4376SLisandro Dalcin 3266b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32679566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat,viewer)); 3268618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3269618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3270618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3271b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3272b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3273b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32749566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32759566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3276b51a4376SLisandro Dalcin 3277b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32789566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat,&rows,&cols)); 32795f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols); 32809566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat,&bs)); 32819566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat,&m,&n)); 32829566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap,&rs,NULL)); 32839566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap,&cs,&ce)); 3284b51a4376SLisandro Dalcin mbs = m/bs; nbs = n/bs; 3285b51a4376SLisandro Dalcin 3286b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m+1,&rowidxs)); 32889566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT)); 3289b51a4376SLisandro Dalcin rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i]; 32901c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer))); 32915f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT,nz,sum); 3292b51a4376SLisandro Dalcin 3293b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32949566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals)); 32959566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT)); 32969566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR)); 3297b51a4376SLisandro Dalcin 3298b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3299b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3300b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3301618cc2edSLisandro Dalcin PetscBool sbaij,done; 3302b51a4376SLisandro Dalcin PetscInt *d_nnz,*o_nnz; 3303b51a4376SLisandro Dalcin 33049566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs,&bt)); 33059566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33069566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz)); 33079566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij)); 3308b51a4376SLisandro Dalcin for (i=0; i<mbs; i++) { 33099566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs,bt)); 33109566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3311618cc2edSLisandro Dalcin for (k=0; k<bs; k++) { 3312618cc2edSLisandro Dalcin PetscInt row = bs*i + k; 3313618cc2edSLisandro Dalcin for (j=rowidxs[row]; j<rowidxs[row+1]; j++) { 3314618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3315618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3316618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3317618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++; 3318b51a4376SLisandro Dalcin } else { 33199566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht,col/bs,&done)); 3320b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3321b51a4376SLisandro Dalcin } 3322b51a4376SLisandro Dalcin } 3323618cc2edSLisandro Dalcin } 3324618cc2edSLisandro Dalcin } 3325618cc2edSLisandro Dalcin } 33269566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33279566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33289566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz)); 33299566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz)); 33309566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz,o_nnz)); 3331b51a4376SLisandro Dalcin } 3332b51a4376SLisandro Dalcin 3333b51a4376SLisandro Dalcin /* store matrix values */ 3334b51a4376SLisandro Dalcin for (i=0; i<m; i++) { 3335b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1]; 33369566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES)); 3337b51a4376SLisandro Dalcin } 3338b51a4376SLisandro Dalcin 33399566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33409566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs,matvals)); 33419566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY)); 33429566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY)); 3343b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3344b51a4376SLisandro Dalcin } 3345b51a4376SLisandro Dalcin 3346b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer) 33474683f7a4SShri Abhyankar { 33487f489da9SVaclav Hapla PetscBool isbinary; 33494683f7a4SShri Abhyankar 33504683f7a4SShri Abhyankar PetscFunctionBegin; 33519566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary)); 33525f80ce2aSJacob Faibussowitsch PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name); 33539566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat,viewer)); 33544683f7a4SShri Abhyankar PetscFunctionReturn(0); 33554683f7a4SShri Abhyankar } 33564683f7a4SShri Abhyankar 3357133cdb44SSatish Balay /*@ 3358133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3359133cdb44SSatish Balay 3360133cdb44SSatish Balay Input Parameters: 3361a2b725a8SWilliam Gropp + mat - the matrix 3362a2b725a8SWilliam Gropp - fact - factor 3363133cdb44SSatish Balay 3364c5eb9154SBarry Smith Not Collective, each process can use a different factor 3365fee21e36SBarry Smith 33668c890885SBarry Smith Level: advanced 33678c890885SBarry Smith 3368133cdb44SSatish Balay Notes: 33698c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3370133cdb44SSatish Balay 3371db781477SPatrick Sanan .seealso: `MatSetOption()` 3372133cdb44SSatish Balay @*/ 33737087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3374133cdb44SSatish Balay { 33755bf65638SKris Buschelman PetscFunctionBegin; 3376cac4c232SBarry Smith PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact)); 33775bf65638SKris Buschelman PetscFunctionReturn(0); 33785bf65638SKris Buschelman } 33795bf65638SKris Buschelman 33807087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 33815bf65638SKris Buschelman { 338225fdafccSSatish Balay Mat_MPIBAIJ *baij; 3383133cdb44SSatish Balay 3384133cdb44SSatish Balay PetscFunctionBegin; 3385133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3386133cdb44SSatish Balay baij->ht_fact = fact; 3387133cdb44SSatish Balay PetscFunctionReturn(0); 3388133cdb44SSatish Balay } 3389f2a5309cSSatish Balay 33909230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3391f2a5309cSSatish Balay { 3392f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 3393ab4d48faSStefano Zampini PetscBool flg; 33945fd66863SKarl Rupp 3395f2a5309cSSatish Balay PetscFunctionBegin; 33969566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg)); 33975f80ce2aSJacob Faibussowitsch PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input"); 339821e72a00SBarry Smith if (Ad) *Ad = a->A; 339921e72a00SBarry Smith if (Ao) *Ao = a->B; 340021e72a00SBarry Smith if (colmap) *colmap = a->garray; 3401f2a5309cSSatish Balay PetscFunctionReturn(0); 3402f2a5309cSSatish Balay } 340385535b8eSBarry Smith 340485535b8eSBarry Smith /* 340585535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 340685535b8eSBarry Smith */ 340785535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 340885535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 340985535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 341085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 341185535b8eSBarry Smith #endif 341285535b8eSBarry Smith 341385535b8eSBarry Smith /*@C 341485535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 341585535b8eSBarry Smith 341685535b8eSBarry Smith Collective on Mat 341785535b8eSBarry Smith 341885535b8eSBarry Smith Input Parameters: 341985535b8eSBarry Smith + mat - the matrix 342085535b8eSBarry Smith . min - number of input rows 342185535b8eSBarry Smith . im - input rows 342285535b8eSBarry Smith . nin - number of input columns 342385535b8eSBarry Smith . in - input columns 342485535b8eSBarry Smith . v - numerical values input 342585535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 342685535b8eSBarry Smith 342795452b02SPatrick Sanan Notes: 342895452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 342985535b8eSBarry Smith 343085535b8eSBarry Smith Level: advanced 343185535b8eSBarry Smith 3432db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()` 343385535b8eSBarry Smith @*/ 343485535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 343585535b8eSBarry Smith { 343685535b8eSBarry Smith /* convert input arguments to C version */ 343785535b8eSBarry Smith Mat mat = *matin; 343885535b8eSBarry Smith PetscInt m = *min, n = *nin; 343985535b8eSBarry Smith InsertMode addv = *addvin; 344085535b8eSBarry Smith 344185535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 344285535b8eSBarry Smith const MatScalar *value; 344385535b8eSBarry Smith MatScalar *barray = baij->barray; 3444ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 344585535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 344685535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3447d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 344885535b8eSBarry Smith 344985535b8eSBarry Smith PetscFunctionBegin; 345085535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 345126fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34525f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 34535f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 345485535b8eSBarry Smith if (mat->assembled) { 345585535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 345685535b8eSBarry Smith mat->assembled = PETSC_FALSE; 345785535b8eSBarry Smith } 34589566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues,mat,0,0,0)); 345985535b8eSBarry Smith 346085535b8eSBarry Smith if (!barray) { 34619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2,&barray)); 346285535b8eSBarry Smith baij->barray = barray; 346385535b8eSBarry Smith } 346485535b8eSBarry Smith 346526fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 346626fbe8dcSKarl Rupp else stepval = (m-1)*bs; 346726fbe8dcSKarl Rupp 346885535b8eSBarry Smith for (i=0; i<m; i++) { 346985535b8eSBarry Smith if (im[i] < 0) continue; 34706bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1); 347185535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 347285535b8eSBarry Smith row = im[i] - rstart; 347385535b8eSBarry Smith for (j=0; j<n; j++) { 347485535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 347585535b8eSBarry Smith if ((roworiented) && (n == 1)) { 347685535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 347785535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 347885535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 347985535b8eSBarry Smith } else { /* Here a copy is required */ 348085535b8eSBarry Smith if (roworiented) { 348185535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 348285535b8eSBarry Smith } else { 348385535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 348485535b8eSBarry Smith } 348585535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 348685535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 348785535b8eSBarry Smith *barray++ = *value++; 348885535b8eSBarry Smith } 348985535b8eSBarry Smith } 349085535b8eSBarry Smith barray -=bs2; 349185535b8eSBarry Smith } 349285535b8eSBarry Smith 349385535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 349485535b8eSBarry Smith col = in[j] - cstart; 34959566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j])); 349626fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 34976bdcaf15SBarry Smith else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1); 349885535b8eSBarry Smith else { 349985535b8eSBarry Smith if (mat->was_assembled) { 350085535b8eSBarry Smith if (!baij->colmap) { 35019566063dSJacob Faibussowitsch PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 350285535b8eSBarry Smith } 350385535b8eSBarry Smith 350485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 350585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 350685535b8eSBarry Smith { PetscInt data; 35079566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data)); 350808401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 350985535b8eSBarry Smith } 351085535b8eSBarry Smith #else 351108401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 351285535b8eSBarry Smith #endif 351385535b8eSBarry Smith #endif 351485535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 35159566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col)); 351685535b8eSBarry Smith col = (col - 1)/bs; 351785535b8eSBarry Smith #else 351885535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 351985535b8eSBarry Smith #endif 352085535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 35219566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 352285535b8eSBarry Smith col = in[j]; 352385535b8eSBarry Smith } 352426fbe8dcSKarl Rupp } else col = in[j]; 35259566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j])); 352685535b8eSBarry Smith } 352785535b8eSBarry Smith } 352885535b8eSBarry Smith } else { 352985535b8eSBarry Smith if (!baij->donotstash) { 353085535b8eSBarry Smith if (roworiented) { 35319566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 353285535b8eSBarry Smith } else { 35339566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i)); 353485535b8eSBarry Smith } 353585535b8eSBarry Smith } 353685535b8eSBarry Smith } 353785535b8eSBarry Smith } 353885535b8eSBarry Smith 353985535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35409566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues,mat,0,0,0)); 354185535b8eSBarry Smith PetscFunctionReturn(0); 354285535b8eSBarry Smith } 3543dfb205c3SBarry Smith 3544dfb205c3SBarry Smith /*@ 3545483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3546dfb205c3SBarry Smith CSR format the local rows. 3547dfb205c3SBarry Smith 3548d083f849SBarry Smith Collective 3549dfb205c3SBarry Smith 3550dfb205c3SBarry Smith Input Parameters: 3551dfb205c3SBarry Smith + comm - MPI communicator 3552dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3553dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3554dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3555dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3556dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3557dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3558dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3559483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3560dfb205c3SBarry Smith . j - column indices 3561dfb205c3SBarry Smith - a - matrix values 3562dfb205c3SBarry Smith 3563dfb205c3SBarry Smith Output Parameter: 3564dfb205c3SBarry Smith . mat - the matrix 3565dfb205c3SBarry Smith 3566dfb205c3SBarry Smith Level: intermediate 3567dfb205c3SBarry Smith 3568dfb205c3SBarry Smith Notes: 3569dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3570dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3571dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3572dfb205c3SBarry Smith 35733adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35743adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35753adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35763adadaf3SJed Brown with column-major ordering within blocks. 35773adadaf3SJed Brown 3578dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3579dfb205c3SBarry Smith 3580db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3581db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3582dfb205c3SBarry Smith @*/ 35837087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 3584dfb205c3SBarry Smith { 3585dfb205c3SBarry Smith PetscFunctionBegin; 35865f80ce2aSJacob Faibussowitsch PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 35875f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35889566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,mat)); 35899566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat,m,n,M,N)); 35909566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat,MATMPIBAIJ)); 35919566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat,bs)); 35929566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35939566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE)); 35949566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a)); 35959566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE)); 3596dfb205c3SBarry Smith PetscFunctionReturn(0); 3597dfb205c3SBarry Smith } 3598e561ad89SHong Zhang 3599bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 3600e561ad89SHong Zhang { 3601bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 3602bd153df0SHong Zhang PetscInt *indx; 3603bd153df0SHong Zhang PetscScalar *values; 3604e561ad89SHong Zhang 3605e561ad89SHong Zhang PetscFunctionBegin; 36069566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat,&m,&N)); 3607bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3608bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 36092c6ba4edSHong Zhang PetscInt *dnz,*onz,mbs,Nbs,nbs; 3610bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 361177f764caSHong Zhang PetscMPIInt rank,size; 3612e561ad89SHong Zhang 36139566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 3614bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 3615bd153df0SHong Zhang if (n == PETSC_DECIDE) { 36169566063dSJacob Faibussowitsch PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N)); 3617bd153df0SHong Zhang } 3618da91a574SPierre Jolivet nbs = n/cbs; 3619e561ad89SHong Zhang 36209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax,&bindx)); 3621d0609cedSBarry Smith MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */ 362277f764caSHong Zhang 36239566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&rank)); 36249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm,&size)); 362577f764caSHong Zhang if (rank == size-1) { 362677f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36275f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs); 362877f764caSHong Zhang } 362977f764caSHong Zhang 3630d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3631bd153df0SHong Zhang for (i=0; i<mbs; i++) { 36329566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */ 3633647a6520SHong Zhang nnz = nnz/bs; 3634647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 36359566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz)); 36369566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); 3637e561ad89SHong Zhang } 36389566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3639e561ad89SHong Zhang 36409566063dSJacob Faibussowitsch PetscCall(MatCreate(comm,outmat)); 36419566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE)); 36429566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat,bs,cbs)); 36439566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat,MATBAIJ)); 36449566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz)); 36459566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz)); 3646d0609cedSBarry Smith MatPreallocateEnd(dnz,onz); 36479566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE)); 3648e561ad89SHong Zhang } 3649e561ad89SHong Zhang 3650bd153df0SHong Zhang /* numeric phase */ 36519566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat,&bs,&cbs)); 36529566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL)); 3653e561ad89SHong Zhang 3654e561ad89SHong Zhang for (i=0; i<m; i++) { 36559566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values)); 3656e561ad89SHong Zhang Ii = i + rstart; 36579566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES)); 36589566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values)); 3659e561ad89SHong Zhang } 36609566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY)); 36619566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY)); 3662e561ad89SHong Zhang PetscFunctionReturn(0); 3663e561ad89SHong Zhang } 3664