1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 726cec326SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 826cec326SBarry Smith { 926cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1026cec326SBarry Smith 1126cec326SBarry Smith PetscFunctionBegin; 1226cec326SBarry Smith #if defined(PETSC_USE_LOG) 1326cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 1426cec326SBarry Smith #endif 1526cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 1626cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 1726cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 1826cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 2026cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 2126cec326SBarry Smith #else 2226cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 2326cec326SBarry Smith #endif 2426cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 2526cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 2626cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 2726cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 2826cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 2926cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 3026cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 3126cec326SBarry Smith PetscCall(PetscFree(mat->data)); 3226cec326SBarry Smith 3326cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 3426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 3526cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 3626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 3726cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 3826cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 3926cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 4026cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 4126cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 4226cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 4326cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 4426cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 4526cec326SBarry Smith #endif 4626cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 4726cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 4826cec326SBarry Smith } 4926cec326SBarry Smith 5026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 5126cec326SBarry Smith #define TYPE BAIJ 5226cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 5326cec326SBarry Smith #undef TYPE 5426cec326SBarry Smith 557ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 567ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 577ea3e4caSstefano_zampini #endif 587ea3e4caSstefano_zampini 59d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 60d71ae5a4SJacob Faibussowitsch { 617843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 624e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 634e879edeSHong Zhang PetscScalar *va, *vv; 644e879edeSHong Zhang Vec vB, vA; 654e879edeSHong Zhang const PetscScalar *vb; 667843d17aSBarry Smith 677843d17aSBarry Smith PetscFunctionBegin; 689566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 699566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 704e879edeSHong Zhang 719566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 72985db425SBarry Smith if (idx) { 734e879edeSHong Zhang for (i = 0; i < m; i++) { 7426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7526fbe8dcSKarl Rupp } 76985db425SBarry Smith } 777843d17aSBarry Smith 789566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 809566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 817843d17aSBarry Smith 829566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 839566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 844e879edeSHong Zhang for (i = 0; i < m; i++) { 8526fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 864e879edeSHong Zhang vv[i] = vb[i]; 874e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 884e879edeSHong Zhang } else { 894e879edeSHong Zhang vv[i] = va[i]; 909371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 9126fbe8dcSKarl Rupp } 927843d17aSBarry Smith } 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 969566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1007843d17aSBarry Smith } 1017843d17aSBarry Smith 102d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 103d71ae5a4SJacob Faibussowitsch { 1047fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1057fc3c18eSBarry Smith 1067fc3c18eSBarry Smith PetscFunctionBegin; 1079566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1089566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1107fc3c18eSBarry Smith } 1117fc3c18eSBarry Smith 112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 113d71ae5a4SJacob Faibussowitsch { 1147fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1157fc3c18eSBarry Smith 1167fc3c18eSBarry Smith PetscFunctionBegin; 1179566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1189566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1207fc3c18eSBarry Smith } 1217fc3c18eSBarry Smith 122537820f0SBarry Smith /* 123537820f0SBarry Smith Local utility routine that creates a mapping from the global column 12457b952d6SSatish Balay number to the local number in the off-diagonal part of the local 125e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 12657b952d6SSatish Balay length of colmap equals the global matrix length. 12757b952d6SSatish Balay */ 128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 129d71ae5a4SJacob Faibussowitsch { 13057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 13157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 132d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 13357b952d6SSatish Balay 134d64ed03dSBarry Smith PetscFunctionBegin; 135aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 136eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 137c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 13848e59246SSatish Balay #else 1399566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 140928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 14148e59246SSatish Balay #endif 1423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14357b952d6SSatish Balay } 14457b952d6SSatish Balay 145d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 14680c1aa95SSatish Balay { \ 14780c1aa95SSatish Balay brow = row / bs; \ 1489371c9d4SSatish Balay rp = aj + ai[brow]; \ 1499371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 1509371c9d4SSatish Balay rmax = aimax[brow]; \ 1519371c9d4SSatish Balay nrow = ailen[brow]; \ 15280c1aa95SSatish Balay bcol = col / bs; \ 1539371c9d4SSatish Balay ridx = row % bs; \ 1549371c9d4SSatish Balay cidx = col % bs; \ 1559371c9d4SSatish Balay low = 0; \ 1569371c9d4SSatish Balay high = nrow; \ 157ab26458aSBarry Smith while (high - low > 3) { \ 158ab26458aSBarry Smith t = (low + high) / 2; \ 159ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 160ab26458aSBarry Smith else low = t; \ 161ab26458aSBarry Smith } \ 162ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 16380c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 16480c1aa95SSatish Balay if (rp[_i] == bcol) { \ 16580c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 166eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167eada6651SSatish Balay else *bap = value; \ 168ac7a638eSSatish Balay goto a_noinsert; \ 16980c1aa95SSatish Balay } \ 17080c1aa95SSatish Balay } \ 17189280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1725f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 17480c1aa95SSatish Balay N = nrow++ - 1; \ 17580c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1769566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1779566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1789566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 17980c1aa95SSatish Balay rp[_i] = bcol; \ 18080c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 181ac7a638eSSatish Balay a_noinsert:; \ 18280c1aa95SSatish Balay ailen[brow] = nrow; \ 18380c1aa95SSatish Balay } 18457b952d6SSatish Balay 185d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 186ac7a638eSSatish Balay { \ 187ac7a638eSSatish Balay brow = row / bs; \ 1889371c9d4SSatish Balay rp = bj + bi[brow]; \ 1899371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 1909371c9d4SSatish Balay rmax = bimax[brow]; \ 1919371c9d4SSatish Balay nrow = bilen[brow]; \ 192ac7a638eSSatish Balay bcol = col / bs; \ 1939371c9d4SSatish Balay ridx = row % bs; \ 1949371c9d4SSatish Balay cidx = col % bs; \ 1959371c9d4SSatish Balay low = 0; \ 1969371c9d4SSatish Balay high = nrow; \ 197ac7a638eSSatish Balay while (high - low > 3) { \ 198ac7a638eSSatish Balay t = (low + high) / 2; \ 199ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 200ac7a638eSSatish Balay else low = t; \ 201ac7a638eSSatish Balay } \ 202ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 203ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 204ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 205ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 206ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 207ac7a638eSSatish Balay else *bap = value; \ 208ac7a638eSSatish Balay goto b_noinsert; \ 209ac7a638eSSatish Balay } \ 210ac7a638eSSatish Balay } \ 21189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2125f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 213fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 214ac7a638eSSatish Balay N = nrow++ - 1; \ 215ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2169566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 219ac7a638eSSatish Balay rp[_i] = bcol; \ 220ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 221ac7a638eSSatish Balay b_noinsert:; \ 222ac7a638eSSatish Balay bilen[brow] = nrow; \ 223ac7a638eSSatish Balay } 224ac7a638eSSatish Balay 225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 226d71ae5a4SJacob Faibussowitsch { 22757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 22893fea6afSBarry Smith MatScalar value; 229ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 230b24ad042SBarry Smith PetscInt i, j, row, col; 231d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 232d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 233d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 23457b952d6SSatish Balay 235eada6651SSatish Balay /* Some Variables required in the macro */ 23680c1aa95SSatish Balay Mat A = baij->A; 23780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 238b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2393eda8832SBarry Smith MatScalar *aa = a->a; 240ac7a638eSSatish Balay 241ac7a638eSSatish Balay Mat B = baij->B; 242ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 243b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2443eda8832SBarry Smith MatScalar *ba = b->a; 245ac7a638eSSatish Balay 246b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 247b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2483eda8832SBarry Smith MatScalar *ap, *bap; 24980c1aa95SSatish Balay 250d64ed03dSBarry Smith PetscFunctionBegin; 25157b952d6SSatish Balay for (i = 0; i < m; i++) { 2525ef9f2a5SBarry Smith if (im[i] < 0) continue; 2535f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 25457b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 25557b952d6SSatish Balay row = im[i] - rstart_orig; 25657b952d6SSatish Balay for (j = 0; j < n; j++) { 25757b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 25857b952d6SSatish Balay col = in[j] - cstart_orig; 259db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 260db4deed7SKarl Rupp else value = v[i + j * m]; 261d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 262f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 263f7d195e4SLawrence Mitchell continue; 264f7d195e4SLawrence Mitchell } else { 265f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 26657b952d6SSatish Balay if (mat->was_assembled) { 26748a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 268aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 269eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 270bba1ac68SSatish Balay col = col - 1; 27148e59246SSatish Balay #else 272bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 27348e59246SSatish Balay #endif 274c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 2759566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2768295de27SSatish Balay col = in[j]; 2779bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2789bf004c3SSatish Balay B = baij->B; 2799bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2809371c9d4SSatish Balay bimax = b->imax; 2819371c9d4SSatish Balay bi = b->i; 2829371c9d4SSatish Balay bilen = b->ilen; 2839371c9d4SSatish Balay bj = b->j; 2849bf004c3SSatish Balay ba = b->a; 285f7d195e4SLawrence Mitchell } else { 286f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 287f7d195e4SLawrence Mitchell col += in[j] % bs; 288f7d195e4SLawrence Mitchell } 2898295de27SSatish Balay } else col = in[j]; 290db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 291db4deed7SKarl Rupp else value = v[i + j * m]; 292d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2939566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 29457b952d6SSatish Balay } 29557b952d6SSatish Balay } 296d64ed03dSBarry Smith } else { 2975f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 29890f02eecSBarry Smith if (!baij->donotstash) { 2995080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 300ff2fd236SBarry Smith if (roworiented) { 3019566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 302ff2fd236SBarry Smith } else { 3039566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 30457b952d6SSatish Balay } 30557b952d6SSatish Balay } 30657b952d6SSatish Balay } 30790f02eecSBarry Smith } 3083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30957b952d6SSatish Balay } 31057b952d6SSatish Balay 311d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 312d71ae5a4SJacob Faibussowitsch { 313880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3148ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 315880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3168ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 317880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 318880c6e6aSBarry Smith const PetscScalar *value = v; 319880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 320880c6e6aSBarry Smith 321880c6e6aSBarry Smith PetscFunctionBegin; 322880c6e6aSBarry Smith rp = aj + ai[row]; 323880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 324880c6e6aSBarry Smith rmax = imax[row]; 325880c6e6aSBarry Smith nrow = ailen[row]; 3268ab52850SBarry Smith value = v; 3278ab52850SBarry Smith low = 0; 3288ab52850SBarry Smith high = nrow; 329880c6e6aSBarry Smith while (high - low > 7) { 330880c6e6aSBarry Smith t = (low + high) / 2; 331880c6e6aSBarry Smith if (rp[t] > col) high = t; 332880c6e6aSBarry Smith else low = t; 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith for (i = low; i < high; i++) { 335880c6e6aSBarry Smith if (rp[i] > col) break; 336880c6e6aSBarry Smith if (rp[i] == col) { 337880c6e6aSBarry Smith bap = ap + bs2 * i; 338880c6e6aSBarry Smith if (roworiented) { 339880c6e6aSBarry Smith if (is == ADD_VALUES) { 3408ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 341ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 342880c6e6aSBarry Smith } 343880c6e6aSBarry Smith } else { 3448ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 345ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 346880c6e6aSBarry Smith } 347880c6e6aSBarry Smith } 348880c6e6aSBarry Smith } else { 349880c6e6aSBarry Smith if (is == ADD_VALUES) { 3508ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 351ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 352880c6e6aSBarry Smith bap += bs; 353880c6e6aSBarry Smith } 354880c6e6aSBarry Smith } else { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 356ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 357880c6e6aSBarry Smith bap += bs; 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith } 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith goto noinsert2; 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } 364880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3655f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 366880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3679371c9d4SSatish Balay N = nrow++ - 1; 3689371c9d4SSatish Balay high++; 369880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3709566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3719566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 372880c6e6aSBarry Smith rp[i] = col; 373880c6e6aSBarry Smith bap = ap + bs2 * i; 374880c6e6aSBarry Smith if (roworiented) { 3758ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 376ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } else { 3798ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 380ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 381880c6e6aSBarry Smith } 382880c6e6aSBarry Smith } 383880c6e6aSBarry Smith noinsert2:; 384880c6e6aSBarry Smith ailen[row] = nrow; 3853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 386880c6e6aSBarry Smith } 387880c6e6aSBarry Smith 3888ab52850SBarry Smith /* 3898ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3908ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3918ab52850SBarry Smith */ 392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 393d71ae5a4SJacob Faibussowitsch { 394ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 395dd6ea824SBarry Smith const PetscScalar *value; 396f15d580aSBarry Smith MatScalar *barray = baij->barray; 397ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 398899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 399899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 400d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 401ab26458aSBarry Smith 402b16ae2b1SBarry Smith PetscFunctionBegin; 40330793edcSSatish Balay if (!barray) { 4049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 40582502324SSatish Balay baij->barray = barray; 40630793edcSSatish Balay } 40730793edcSSatish Balay 40826fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 40926fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 41026fbe8dcSKarl Rupp 411ab26458aSBarry Smith for (i = 0; i < m; i++) { 4125ef9f2a5SBarry Smith if (im[i] < 0) continue; 4136bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 414ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 415ab26458aSBarry Smith row = im[i] - rstart; 416ab26458aSBarry Smith for (j = 0; j < n; j++) { 41715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 41815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 419f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 42015b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 421f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 42215b57d14SSatish Balay } else { /* Here a copy is required */ 423ab26458aSBarry Smith if (roworiented) { 42453ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 425ab26458aSBarry Smith } else { 42653ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 427abef11f7SSatish Balay } 42853ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 42926fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 43053ef36baSBarry Smith barray += bs; 43147513183SBarry Smith } 43230793edcSSatish Balay barray -= bs2; 43315b57d14SSatish Balay } 434abef11f7SSatish Balay 435abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 436abef11f7SSatish Balay col = in[j] - cstart; 4379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 438f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 439f7d195e4SLawrence Mitchell continue; 440f7d195e4SLawrence Mitchell } else { 441f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 442ab26458aSBarry Smith if (mat->was_assembled) { 44348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 444a5eb4965SSatish Balay 4452515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 446aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4479371c9d4SSatish Balay { 4489371c9d4SSatish Balay PetscInt data; 449eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 45008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 451fa46199cSSatish Balay } 45248e59246SSatish Balay #else 45308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 454a5eb4965SSatish Balay #endif 45548e59246SSatish Balay #endif 456aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 457eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 458fa46199cSSatish Balay col = (col - 1) / bs; 45948e59246SSatish Balay #else 460a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 46148e59246SSatish Balay #endif 4620e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 4639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 464ab26458aSBarry Smith col = in[j]; 4655f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 466db4deed7SKarl Rupp } else col = in[j]; 4679566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 468ab26458aSBarry Smith } 469ab26458aSBarry Smith } 470d64ed03dSBarry Smith } else { 4715f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 472ab26458aSBarry Smith if (!baij->donotstash) { 473ff2fd236SBarry Smith if (roworiented) { 4749566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 475ff2fd236SBarry Smith } else { 4769566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 477ff2fd236SBarry Smith } 478abef11f7SSatish Balay } 479ab26458aSBarry Smith } 480ab26458aSBarry Smith } 4813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482ab26458aSBarry Smith } 4836fa18ffdSBarry Smith 4840bdbc534SSatish Balay #define HASH_KEY 0.6180339887 485b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 486b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 487b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 489d71ae5a4SJacob Faibussowitsch { 4900bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 491ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 492b24ad042SBarry Smith PetscInt i, j, row, col; 493d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 494d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 495d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 496329f5518SBarry Smith PetscReal tmp; 4973eda8832SBarry Smith MatScalar **HD = baij->hd, value; 498b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4990bdbc534SSatish Balay 5000bdbc534SSatish Balay PetscFunctionBegin; 5010bdbc534SSatish Balay for (i = 0; i < m; i++) { 50276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5035f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5045f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50576bd3646SJed Brown } 5060bdbc534SSatish Balay row = im[i]; 507c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5080bdbc534SSatish Balay for (j = 0; j < n; j++) { 5090bdbc534SSatish Balay col = in[j]; 510db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 511db4deed7SKarl Rupp else value = v[i + j * m]; 512b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 513c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 514c2760754SSatish Balay h1 = HASH(size, key, tmp); 5150bdbc534SSatish Balay 516c2760754SSatish Balay idx = h1; 51776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 518187ce0cbSSatish Balay insert_ct++; 519187ce0cbSSatish Balay total_ct++; 520187ce0cbSSatish Balay if (HT[idx] != key) { 5219371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5229371c9d4SSatish Balay ; 523187ce0cbSSatish Balay if (idx == size) { 5249371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5259371c9d4SSatish Balay ; 5265f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 527187ce0cbSSatish Balay } 528187ce0cbSSatish Balay } 52976bd3646SJed Brown } else if (HT[idx] != key) { 5309371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 5319371c9d4SSatish Balay ; 532c2760754SSatish Balay if (idx == size) { 5339371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 5349371c9d4SSatish Balay ; 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 5949371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5959371c9d4SSatish Balay ; 596187ce0cbSSatish Balay if (idx == size) { 5979371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5989371c9d4SSatish Balay ; 5995f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 600187ce0cbSSatish Balay } 601187ce0cbSSatish Balay } 60276bd3646SJed Brown } else if (HT[idx] != key) { 6039371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 6049371c9d4SSatish Balay ; 605c2760754SSatish Balay if (idx == size) { 6069371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 6079371c9d4SSatish Balay ; 6085f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 609c2760754SSatish Balay } 610c2760754SSatish Balay } 611c2760754SSatish Balay baij_a = HD[idx]; 6120bdbc534SSatish Balay if (roworiented) { 613c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 614187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 615187ce0cbSSatish Balay value = v_t; 616187ce0cbSSatish Balay v_t += bs; 617fef45726SSatish Balay if (addv == ADD_VALUES) { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 620b4cc0f5aSSatish Balay } 621fef45726SSatish Balay } else { 622c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 623ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 624fef45726SSatish Balay } 625fef45726SSatish Balay } 6260bdbc534SSatish Balay } else { 6270bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 628fef45726SSatish Balay if (addv == ADD_VALUES) { 629b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 631fef45726SSatish Balay } 632fef45726SSatish Balay } else { 633fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 634ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 635b4cc0f5aSSatish Balay } 6360bdbc534SSatish Balay } 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay } else { 6400bdbc534SSatish Balay if (!baij->donotstash) { 6410bdbc534SSatish Balay if (roworiented) { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430bdbc534SSatish Balay } else { 6449566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6450bdbc534SSatish Balay } 6460bdbc534SSatish Balay } 6470bdbc534SSatish Balay } 6480bdbc534SSatish Balay } 64976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 650abf3b562SBarry Smith baij->ht_total_ct += total_ct; 651abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 65276bd3646SJed Brown } 6533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6540bdbc534SSatish Balay } 655133cdb44SSatish Balay 656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 657d71ae5a4SJacob Faibussowitsch { 658d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 659d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 660d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 661d6de1c52SSatish Balay 662133cdb44SSatish Balay PetscFunctionBegin; 663d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 666d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 667d6de1c52SSatish Balay row = idxm[i] - bsrstart; 668d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 671d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 672d6de1c52SSatish Balay col = idxn[j] - bscstart; 6739566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 674d64ed03dSBarry Smith } else { 67548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 676aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 677eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 678fa46199cSSatish Balay data--; 67948e59246SSatish Balay #else 68048e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 68148e59246SSatish Balay #endif 68248e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 683d9d09a02SSatish Balay else { 68448e59246SSatish Balay col = data + idxn[j] % bs; 6859566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 686d6de1c52SSatish Balay } 687d6de1c52SSatish Balay } 688d6de1c52SSatish Balay } 689f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 690d6de1c52SSatish Balay } 6913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 692d6de1c52SSatish Balay } 693d6de1c52SSatish Balay 694d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 695d71ae5a4SJacob Faibussowitsch { 696d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 697d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 698d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 699329f5518SBarry Smith PetscReal sum = 0.0; 7003eda8832SBarry Smith MatScalar *v; 701d6de1c52SSatish Balay 702d64ed03dSBarry Smith PetscFunctionBegin; 703d6de1c52SSatish Balay if (baij->size == 1) { 7049566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 705d6de1c52SSatish Balay } else { 706d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 707d6de1c52SSatish Balay v = amat->a; 7088a62d963SHong Zhang nz = amat->nz * bs2; 7098a62d963SHong Zhang for (i = 0; i < nz; i++) { 7109371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7119371c9d4SSatish Balay v++; 712d6de1c52SSatish Balay } 713d6de1c52SSatish Balay v = bmat->a; 7148a62d963SHong Zhang nz = bmat->nz * bs2; 7158a62d963SHong Zhang for (i = 0; i < nz; i++) { 7169371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7179371c9d4SSatish Balay v++; 718d6de1c52SSatish Balay } 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7218a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7228a62d963SHong Zhang PetscReal *tmp, *tmp2; 723899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7249566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7269371c9d4SSatish Balay v = amat->a; 7279371c9d4SSatish Balay jj = amat->j; 7288a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7298a62d963SHong Zhang for (j = 0; j < bs; j++) { 7308a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7318a62d963SHong Zhang for (row = 0; row < bs; row++) { 7329371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7339371c9d4SSatish Balay v++; 7348a62d963SHong Zhang } 7358a62d963SHong Zhang } 7368a62d963SHong Zhang jj++; 7378a62d963SHong Zhang } 7389371c9d4SSatish Balay v = bmat->a; 7399371c9d4SSatish Balay jj = bmat->j; 7408a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7418a62d963SHong Zhang for (j = 0; j < bs; j++) { 7428a62d963SHong Zhang col = bs * garray[*jj] + j; 7438a62d963SHong Zhang for (row = 0; row < bs; row++) { 7449371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7459371c9d4SSatish Balay v++; 7468a62d963SHong Zhang } 7478a62d963SHong Zhang } 7488a62d963SHong Zhang jj++; 7498a62d963SHong Zhang } 7501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7518a62d963SHong Zhang *nrm = 0.0; 752d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7538a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7548a62d963SHong Zhang } 7559566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7578a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 758577dd1f9SKris Buschelman PetscReal *sums; 7599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7608a62d963SHong Zhang sum = 0.0; 7618a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7628a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7638a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7648a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7658a62d963SHong Zhang for (i = 0; i < nz; i++) { 7668a62d963SHong Zhang for (col = 0; col < bs; col++) { 7678a62d963SHong Zhang for (row = 0; row < bs; row++) { 7689371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7699371c9d4SSatish Balay v++; 7708a62d963SHong Zhang } 7718a62d963SHong Zhang } 7728a62d963SHong Zhang } 7738a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7748a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7758a62d963SHong Zhang for (i = 0; i < nz; i++) { 7768a62d963SHong Zhang for (col = 0; col < bs; col++) { 7778a62d963SHong Zhang for (row = 0; row < bs; row++) { 7789371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7799371c9d4SSatish Balay v++; 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 7828a62d963SHong Zhang } 7838a62d963SHong Zhang for (row = 0; row < bs; row++) { 7848a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7858a62d963SHong Zhang } 7868a62d963SHong Zhang } 7871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7889566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 789ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 790d64ed03dSBarry Smith } 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 792d6de1c52SSatish Balay } 79357b952d6SSatish Balay 794fef45726SSatish Balay /* 795fef45726SSatish Balay Creates the hash table, and sets the table 796fef45726SSatish Balay This table is created only once. 797fef45726SSatish Balay If new entried need to be added to the matrix 798fef45726SSatish Balay then the hash table has to be destroyed and 799fef45726SSatish Balay recreated. 800fef45726SSatish Balay */ 801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 802d71ae5a4SJacob Faibussowitsch { 803596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 804596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 805596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 806b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 807fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 808899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 809b24ad042SBarry Smith PetscInt *HT, key; 8103eda8832SBarry Smith MatScalar **HD; 811329f5518SBarry Smith PetscReal tmp; 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8144a15367fSSatish Balay #endif 815fef45726SSatish Balay 816d64ed03dSBarry Smith PetscFunctionBegin; 8173ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 818fef45726SSatish Balay 819fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 820fca92195SBarry Smith ht_size = baij->ht_size; 8210bdbc534SSatish Balay 822fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8239566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 824b9e4cc15SSatish Balay HD = baij->hd; 825a07cd24cSSatish Balay HT = baij->ht; 826b9e4cc15SSatish Balay 827596b8d2eSBarry Smith /* Loop Over A */ 8280bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 829596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8300bdbc534SSatish Balay row = i + rstart; 8310bdbc534SSatish Balay col = aj[j] + cstart; 832596b8d2eSBarry Smith 833187ce0cbSSatish Balay key = row * Nbs + col + 1; 834fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 835fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 836fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 837fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 838fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 839596b8d2eSBarry Smith break; 8406cf91177SBarry Smith #if defined(PETSC_USE_INFO) 841187ce0cbSSatish Balay } else { 842187ce0cbSSatish Balay ct++; 843187ce0cbSSatish Balay #endif 844596b8d2eSBarry Smith } 845187ce0cbSSatish Balay } 8466cf91177SBarry Smith #if defined(PETSC_USE_INFO) 847187ce0cbSSatish Balay if (k > max) max = k; 848187ce0cbSSatish Balay #endif 849596b8d2eSBarry Smith } 850596b8d2eSBarry Smith } 851596b8d2eSBarry Smith /* Loop Over B */ 8520bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 853596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8540bdbc534SSatish Balay row = i + rstart; 8550bdbc534SSatish Balay col = garray[bj[j]]; 856187ce0cbSSatish Balay key = row * Nbs + col + 1; 857fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 858fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 859fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 860fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 861fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 862596b8d2eSBarry Smith break; 8636cf91177SBarry Smith #if defined(PETSC_USE_INFO) 864187ce0cbSSatish Balay } else { 865187ce0cbSSatish Balay ct++; 866187ce0cbSSatish Balay #endif 867596b8d2eSBarry Smith } 868187ce0cbSSatish Balay } 8696cf91177SBarry Smith #if defined(PETSC_USE_INFO) 870187ce0cbSSatish Balay if (k > max) max = k; 871187ce0cbSSatish Balay #endif 872596b8d2eSBarry Smith } 873596b8d2eSBarry Smith } 874596b8d2eSBarry Smith 875596b8d2eSBarry Smith /* Print Summary */ 8766cf91177SBarry Smith #if defined(PETSC_USE_INFO) 877fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87826fbe8dcSKarl Rupp if (HT[i]) j++; 879c38d4ed2SBarry Smith } 8809566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 881187ce0cbSSatish Balay #endif 8823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 883596b8d2eSBarry Smith } 88457b952d6SSatish Balay 885d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 886d71ae5a4SJacob Faibussowitsch { 887bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 888b24ad042SBarry Smith PetscInt nstash, reallocs; 889bbb85fb3SSatish Balay 890bbb85fb3SSatish Balay PetscFunctionBegin; 8913ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 892bbb85fb3SSatish Balay 8939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8949566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8959566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8969566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8979566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8989566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 900bbb85fb3SSatish Balay } 901bbb85fb3SSatish Balay 902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 903d71ae5a4SJacob Faibussowitsch { 904bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90591c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 906b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 907e44c0bd4SBarry Smith PetscInt *row, *col; 908ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9093eda8832SBarry Smith MatScalar *val; 910b24ad042SBarry Smith PetscMPIInt n; 911bbb85fb3SSatish Balay 912bbb85fb3SSatish Balay PetscFunctionBegin; 9135fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 915a2d1c673SSatish Balay while (1) { 9169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 917a2d1c673SSatish Balay if (!flg) break; 918a2d1c673SSatish Balay 919bbb85fb3SSatish Balay for (i = 0; i < n;) { 920bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92226fbe8dcSKarl Rupp if (row[j] != rstart) break; 92326fbe8dcSKarl Rupp } 924bbb85fb3SSatish Balay if (j < n) ncols = j - i; 925bbb85fb3SSatish Balay else ncols = n - i; 926bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 928bbb85fb3SSatish Balay i = j; 929bbb85fb3SSatish Balay } 930bbb85fb3SSatish Balay } 9319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 932a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 933a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 934a2d1c673SSatish Balay restore the original flags */ 935a2d1c673SSatish Balay r1 = baij->roworiented; 936a2d1c673SSatish Balay r2 = a->roworiented; 93791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93826fbe8dcSKarl Rupp 9397c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9407c922b88SBarry Smith a->roworiented = PETSC_FALSE; 94126fbe8dcSKarl Rupp 94291c97fd4SSatish Balay (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 943a2d1c673SSatish Balay while (1) { 9449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 945a2d1c673SSatish Balay if (!flg) break; 946a2d1c673SSatish Balay 947a2d1c673SSatish Balay for (i = 0; i < n;) { 948a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 95026fbe8dcSKarl Rupp if (row[j] != rstart) break; 95126fbe8dcSKarl Rupp } 952a2d1c673SSatish Balay if (j < n) ncols = j - i; 953a2d1c673SSatish Balay else ncols = n - i; 9549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 955a2d1c673SSatish Balay i = j; 956a2d1c673SSatish Balay } 957a2d1c673SSatish Balay } 9589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95926fbe8dcSKarl Rupp 960a2d1c673SSatish Balay baij->roworiented = r1; 961a2d1c673SSatish Balay a->roworiented = r2; 96226fbe8dcSKarl Rupp 96391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 964bbb85fb3SSatish Balay } 965bbb85fb3SSatish Balay 9669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 968bbb85fb3SSatish Balay 969bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 971bbb85fb3SSatish Balay /* 972bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 973bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 974bbb85fb3SSatish Balay */ 975bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 978bbb85fb3SSatish Balay } 979bbb85fb3SSatish Balay 98048a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 983bbb85fb3SSatish Balay 9846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 985bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98726fbe8dcSKarl Rupp 988bbb85fb3SSatish Balay baij->ht_total_ct = 0; 989bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 990bbb85fb3SSatish Balay } 991bbb85fb3SSatish Balay #endif 992bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9939566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99426fbe8dcSKarl Rupp 995bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 996bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 997bbb85fb3SSatish Balay } 998bbb85fb3SSatish Balay 9999566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 100026fbe8dcSKarl Rupp 1001f4259b30SLisandro Dalcin baij->rowvalues = NULL; 10024f9cfa9eSBarry Smith 10034f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 10044f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 1005e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 10061c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1007e56f5c9eSBarry Smith } 10083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1009bbb85fb3SSatish Balay } 101057b952d6SSatish Balay 10117da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10129804daf3SBarry Smith #include <petscdraw.h> 1013d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1014d71ae5a4SJacob Faibussowitsch { 101557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10167da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1017d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1018ace3abfcSBarry Smith PetscBool iascii, isdraw; 1019b0a32e0cSBarry Smith PetscViewer sviewer; 1020f3ef73ceSBarry Smith PetscViewerFormat format; 102157b952d6SSatish Balay 1022d64ed03dSBarry Smith PetscFunctionBegin; 10239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 102532077d6dSBarry Smith if (iascii) { 10269566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1027456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10284e220ebcSLois Curfman McInnes MatInfo info; 10299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10309566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10329371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10339371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10349566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10369566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10389566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1043fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104604929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104857b952d6SSatish Balay } 104957b952d6SSatish Balay } 105057b952d6SSatish Balay 10510f5bd95cSBarry Smith if (isdraw) { 1052b0a32e0cSBarry Smith PetscDraw draw; 1053ace3abfcSBarry Smith PetscBool isnull; 10549566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10559566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10563ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105757b952d6SSatish Balay } 105857b952d6SSatish Balay 10597da1fb6eSBarry Smith { 106057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 106157b952d6SSatish Balay Mat A; 106257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1063d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10643eda8832SBarry Smith MatScalar *a; 10653e219373SBarry Smith const char *matname; 106657b952d6SSatish Balay 1067f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1068f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1070dd400576SPatrick Sanan if (rank == 0) { 10719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1072d64ed03dSBarry Smith } else { 10739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 107457b952d6SSatish Balay } 10759566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10769566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10779566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107857b952d6SSatish Balay 107957b952d6SSatish Balay /* copy over the A part */ 108057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10819371c9d4SSatish Balay ai = Aloc->i; 10829371c9d4SSatish Balay aj = Aloc->j; 10839371c9d4SSatish Balay a = Aloc->a; 10849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 108557b952d6SSatish Balay 108657b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1087899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108957b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1090899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 109157b952d6SSatish Balay for (k = 0; k < bs; k++) { 10929566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10939371c9d4SSatish Balay col++; 10949371c9d4SSatish Balay a += bs; 109557b952d6SSatish Balay } 109657b952d6SSatish Balay } 109757b952d6SSatish Balay } 109857b952d6SSatish Balay /* copy over the B part */ 109957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 11009371c9d4SSatish Balay ai = Aloc->i; 11019371c9d4SSatish Balay aj = Aloc->j; 11029371c9d4SSatish Balay a = Aloc->a; 110357b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1104899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 110526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 110657b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110757b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110857b952d6SSatish Balay for (k = 0; k < bs; k++) { 11099566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11109371c9d4SSatish Balay col++; 11119371c9d4SSatish Balay a += bs; 111257b952d6SSatish Balay } 111357b952d6SSatish Balay } 111457b952d6SSatish Balay } 11159566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11169566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11179566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111855843e3eSBarry Smith /* 111955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1120b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 112155843e3eSBarry Smith */ 11229566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 112323a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1124dd400576SPatrick Sanan if (rank == 0) { 112523a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname)); 11269566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer)); 112757b952d6SSatish Balay } 11289566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11299566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 11309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 113157b952d6SSatish Balay } 11323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113357b952d6SSatish Balay } 113457b952d6SSatish Balay 1135618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1136d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1137d71ae5a4SJacob Faibussowitsch { 1138b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1139b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1140b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1141b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1142b51a4376SLisandro Dalcin PetscInt header[4], M, N, m, rs, cs, bs, nz, cnt, i, j, ja, jb, k, l; 1143b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1144b51a4376SLisandro Dalcin PetscScalar *matvals; 1145660746e0SBarry Smith 1146660746e0SBarry Smith PetscFunctionBegin; 11479566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1148b51a4376SLisandro Dalcin 1149b51a4376SLisandro Dalcin M = mat->rmap->N; 1150b51a4376SLisandro Dalcin N = mat->cmap->N; 1151b51a4376SLisandro Dalcin m = mat->rmap->n; 1152b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1153b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1154b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1155b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1156b51a4376SLisandro Dalcin 1157b51a4376SLisandro Dalcin /* write matrix header */ 1158660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11599371c9d4SSatish Balay header[1] = M; 11609371c9d4SSatish Balay header[2] = N; 11619371c9d4SSatish Balay header[3] = nz; 11629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nz, &header[3], 1, MPIU_INT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 11639566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1164660746e0SBarry Smith 1165b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1167b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11689371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11709566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1171660746e0SBarry Smith 1172b51a4376SLisandro Dalcin /* fill in and store column indices */ 11739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1174b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1175b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1176b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1177b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11789371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1179660746e0SBarry Smith } 1180b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11819371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1182b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11839371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1184660746e0SBarry Smith } 1185660746e0SBarry Smith } 11865f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz); 11879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11889566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1189660746e0SBarry Smith 1190b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1192b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1193b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1194b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1195b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11969371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1197660746e0SBarry Smith } 1198b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11999371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1200b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 12019371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1202660746e0SBarry Smith } 1203b51a4376SLisandro Dalcin } 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1206660746e0SBarry Smith 1207b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12089566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1210660746e0SBarry Smith } 1211660746e0SBarry Smith 1212d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1213d71ae5a4SJacob Faibussowitsch { 1214ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121557b952d6SSatish Balay 1216d64ed03dSBarry Smith PetscFunctionBegin; 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1221660746e0SBarry Smith if (iascii || isdraw || issocket) { 12229566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12231baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122557b952d6SSatish Balay } 122657b952d6SSatish Balay 1227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1228d71ae5a4SJacob Faibussowitsch { 1229cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1230b24ad042SBarry Smith PetscInt nt; 1231cee3aa6bSSatish Balay 1232d64ed03dSBarry Smith PetscFunctionBegin; 12339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12345f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12359566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1236da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12389566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12409566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 1244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1245d71ae5a4SJacob Faibussowitsch { 1246cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1247d64ed03dSBarry Smith 1248d64ed03dSBarry Smith PetscFunctionBegin; 12499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12509566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1254cee3aa6bSSatish Balay } 1255cee3aa6bSSatish Balay 1256d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1257d71ae5a4SJacob Faibussowitsch { 1258cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1259cee3aa6bSSatish Balay 1260d64ed03dSBarry Smith PetscFunctionBegin; 1261cee3aa6bSSatish Balay /* do nondiagonal part */ 12629566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1263cee3aa6bSSatish Balay /* do local part */ 12649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1265e4a140f6SJunchao Zhang /* add partial results together */ 12669566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12679566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1269cee3aa6bSSatish Balay } 1270cee3aa6bSSatish Balay 1271d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1272d71ae5a4SJacob Faibussowitsch { 1273cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1274cee3aa6bSSatish Balay 1275d64ed03dSBarry Smith PetscFunctionBegin; 1276cee3aa6bSSatish Balay /* do nondiagonal part */ 12779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1278cee3aa6bSSatish Balay /* do local part */ 12799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1280e4a140f6SJunchao Zhang /* add partial results together */ 12819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1284cee3aa6bSSatish Balay } 1285cee3aa6bSSatish Balay 1286cee3aa6bSSatish Balay /* 1287cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1288cee3aa6bSSatish Balay diagonal block 1289cee3aa6bSSatish Balay */ 1290d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1291d71ae5a4SJacob Faibussowitsch { 1292d64ed03dSBarry Smith PetscFunctionBegin; 12935f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12949566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296cee3aa6bSSatish Balay } 1297cee3aa6bSSatish Balay 1298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1299d71ae5a4SJacob Faibussowitsch { 1300cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1301d64ed03dSBarry Smith 1302d64ed03dSBarry Smith PetscFunctionBegin; 13039566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13049566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1306cee3aa6bSSatish Balay } 1307026e39d0SSatish Balay 1308d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1309d71ae5a4SJacob Faibussowitsch { 1310acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 131187828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1312d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1313d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1314899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1315acdf5bf4SSatish Balay 1316d64ed03dSBarry Smith PetscFunctionBegin; 13175f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13185f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1319acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1320acdf5bf4SSatish Balay 1321acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1322acdf5bf4SSatish Balay /* 1323acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1324acdf5bf4SSatish Balay */ 1325acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1326b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1327bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1328acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1330acdf5bf4SSatish Balay } 13319566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1332acdf5bf4SSatish Balay } 1333d9d09a02SSatish Balay lrow = row - brstart; 1334acdf5bf4SSatish Balay 13359371c9d4SSatish Balay pvA = &vworkA; 13369371c9d4SSatish Balay pcA = &cworkA; 13379371c9d4SSatish Balay pvB = &vworkB; 13389371c9d4SSatish Balay pcB = &cworkB; 13399371c9d4SSatish Balay if (!v) { 13409371c9d4SSatish Balay pvA = NULL; 13419371c9d4SSatish Balay pvB = NULL; 13429371c9d4SSatish Balay } 13439371c9d4SSatish Balay if (!idx) { 13449371c9d4SSatish Balay pcA = NULL; 13459371c9d4SSatish Balay if (!v) pcB = NULL; 13469371c9d4SSatish Balay } 13479566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13489566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1349acdf5bf4SSatish Balay nztot = nzA + nzB; 1350acdf5bf4SSatish Balay 1351acdf5bf4SSatish Balay cmap = mat->garray; 1352acdf5bf4SSatish Balay if (v || idx) { 1353acdf5bf4SSatish Balay if (nztot) { 1354acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1355b24ad042SBarry Smith PetscInt imark = -1; 1356acdf5bf4SSatish Balay if (v) { 1357acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1358acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1359d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1360acdf5bf4SSatish Balay else break; 1361acdf5bf4SSatish Balay } 1362acdf5bf4SSatish Balay imark = i; 1363acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1364acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1365acdf5bf4SSatish Balay } 1366acdf5bf4SSatish Balay if (idx) { 1367acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1368acdf5bf4SSatish Balay if (imark > -1) { 1369ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1370acdf5bf4SSatish Balay } else { 1371acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 137226fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1373acdf5bf4SSatish Balay else break; 1374acdf5bf4SSatish Balay } 1375acdf5bf4SSatish Balay imark = i; 1376acdf5bf4SSatish Balay } 1377d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1378d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1379acdf5bf4SSatish Balay } 1380d64ed03dSBarry Smith } else { 1381f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1382f4259b30SLisandro Dalcin if (v) *v = NULL; 1383d212a18eSSatish Balay } 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay *nz = nztot; 13869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13879566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1389acdf5bf4SSatish Balay } 1390acdf5bf4SSatish Balay 1391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1392d71ae5a4SJacob Faibussowitsch { 1393acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1394d64ed03dSBarry Smith 1395d64ed03dSBarry Smith PetscFunctionBegin; 13965f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1397acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1399acdf5bf4SSatish Balay } 1400acdf5bf4SSatish Balay 1401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1402d71ae5a4SJacob Faibussowitsch { 140358667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1404d64ed03dSBarry Smith 1405d64ed03dSBarry Smith PetscFunctionBegin; 14069566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14079566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140958667388SSatish Balay } 14100ac07820SSatish Balay 1411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1412d71ae5a4SJacob Faibussowitsch { 14134e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14144e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14153966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14160ac07820SSatish Balay 1417d64ed03dSBarry Smith PetscFunctionBegin; 1418d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141926fbe8dcSKarl Rupp 14209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 142126fbe8dcSKarl Rupp 14229371c9d4SSatish Balay isend[0] = info->nz_used; 14239371c9d4SSatish Balay isend[1] = info->nz_allocated; 14249371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14259371c9d4SSatish Balay isend[3] = info->memory; 14269371c9d4SSatish Balay isend[4] = info->mallocs; 142726fbe8dcSKarl Rupp 14289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142926fbe8dcSKarl Rupp 14309371c9d4SSatish Balay isend[0] += info->nz_used; 14319371c9d4SSatish Balay isend[1] += info->nz_allocated; 14329371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14339371c9d4SSatish Balay isend[3] += info->memory; 14349371c9d4SSatish Balay isend[4] += info->mallocs; 143526fbe8dcSKarl Rupp 14360ac07820SSatish Balay if (flag == MAT_LOCAL) { 14374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14404e220ebcSLois Curfman McInnes info->memory = isend[3]; 14414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14420ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 144426fbe8dcSKarl Rupp 14454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14500ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 145226fbe8dcSKarl Rupp 14534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14630ac07820SSatish Balay } 14640ac07820SSatish Balay 1465d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1466d71ae5a4SJacob Faibussowitsch { 146758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146858667388SSatish Balay 1469d64ed03dSBarry Smith PetscFunctionBegin; 147012c028f9SKris Buschelman switch (op) { 1471512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1474a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147643674050SBarry Smith MatCheckPreallocated(A, 1); 14779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14789566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147912c028f9SKris Buschelman break; 148012c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148143674050SBarry Smith MatCheckPreallocated(A, 1); 14824e0d8c25SBarry Smith a->roworiented = flg; 148326fbe8dcSKarl Rupp 14849566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14859566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148612c028f9SKris Buschelman break; 14878c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1488d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1489d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1490d71ae5a4SJacob Faibussowitsch break; 1491d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1492d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1493d71ae5a4SJacob Faibussowitsch break; 149412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14954e0d8c25SBarry Smith a->ht_flag = flg; 1496abf3b562SBarry Smith a->ht_fact = 1.39; 149712c028f9SKris Buschelman break; 149877e54ba9SKris Buschelman case MAT_SYMMETRIC: 149977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15002188ac68SBarry Smith case MAT_HERMITIAN: 1501c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15022188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1503b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1504b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1505b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150677e54ba9SKris Buschelman break; 1507d71ae5a4SJacob Faibussowitsch default: 1508d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1509d64ed03dSBarry Smith } 15103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151158667388SSatish Balay } 151258667388SSatish Balay 1513d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1514d71ae5a4SJacob Faibussowitsch { 15150ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15160ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15170ac07820SSatish Balay Mat B; 1518d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1519d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15203eda8832SBarry Smith MatScalar *a; 15210ac07820SSatish Balay 1522d64ed03dSBarry Smith PetscFunctionBegin; 15237fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1524cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15259566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15279566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15282e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15299566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1530fc4dec0aSBarry Smith } else { 1531fc4dec0aSBarry Smith B = *matout; 1532fc4dec0aSBarry Smith } 15330ac07820SSatish Balay 15340ac07820SSatish Balay /* copy over the A part */ 15350ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15369371c9d4SSatish Balay ai = Aloc->i; 15379371c9d4SSatish Balay aj = Aloc->j; 15389371c9d4SSatish Balay a = Aloc->a; 15399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15400ac07820SSatish Balay 15410ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1542899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15440ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1545899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15460ac07820SSatish Balay for (k = 0; k < bs; k++) { 15479566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154826fbe8dcSKarl Rupp 15499371c9d4SSatish Balay col++; 15509371c9d4SSatish Balay a += bs; 15510ac07820SSatish Balay } 15520ac07820SSatish Balay } 15530ac07820SSatish Balay } 15540ac07820SSatish Balay /* copy over the B part */ 15550ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15569371c9d4SSatish Balay ai = Aloc->i; 15579371c9d4SSatish Balay aj = Aloc->j; 15589371c9d4SSatish Balay a = Aloc->a; 15590ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1560899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 156126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15620ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15630ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15640ac07820SSatish Balay for (k = 0; k < bs; k++) { 15659566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156626fbe8dcSKarl Rupp col++; 156726fbe8dcSKarl Rupp a += bs; 15680ac07820SSatish Balay } 15690ac07820SSatish Balay } 15700ac07820SSatish Balay } 15719566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15740ac07820SSatish Balay 1575cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157648a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15780ac07820SSatish Balay } 15790e95ebc0SSatish Balay 1580d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1581d71ae5a4SJacob Faibussowitsch { 158236c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 158336c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1584b24ad042SBarry Smith PetscInt s1, s2, s3; 15850e95ebc0SSatish Balay 1586d64ed03dSBarry Smith PetscFunctionBegin; 15879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158836c4a09eSSatish Balay if (rr) { 15899566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15905f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 159136c4a09eSSatish Balay /* Overlap communication with computation. */ 15929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 159336c4a09eSSatish Balay } 15940e95ebc0SSatish Balay if (ll) { 15959566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15965f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1597dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15980e95ebc0SSatish Balay } 159936c4a09eSSatish Balay /* scale the diagonal block */ 1600dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 160136c4a09eSSatish Balay 160236c4a09eSSatish Balay if (rr) { 160336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 16049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1605dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160636c4a09eSSatish Balay } 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16080e95ebc0SSatish Balay } 16090e95ebc0SSatish Balay 1610d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1611d71ae5a4SJacob Faibussowitsch { 16120ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 161365a92638SMatthew G. Knepley PetscInt *lrows; 16146e520ac8SStefano Zampini PetscInt r, len; 161594342113SStefano Zampini PetscBool cong; 16160ac07820SSatish Balay 1617d64ed03dSBarry Smith PetscFunctionBegin; 16186e520ac8SStefano Zampini /* get locally owned rows */ 16199566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 162097b48c8fSBarry Smith /* fix right hand side if needed */ 162197b48c8fSBarry Smith if (x && b) { 162265a92638SMatthew G. Knepley const PetscScalar *xx; 162365a92638SMatthew G. Knepley PetscScalar *bb; 162465a92638SMatthew G. Knepley 16259566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16269566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 162765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 163097b48c8fSBarry Smith } 163197b48c8fSBarry Smith 16320ac07820SSatish Balay /* actually zap the local rows */ 163372dacd9aSBarry Smith /* 163472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1635a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 163772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163872dacd9aSBarry Smith 163972dacd9aSBarry Smith */ 16409c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16419566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16429566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 164394342113SStefano Zampini if ((diag != 0.0) && cong) { 16449566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1645f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16469566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 16475f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1648512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 164965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 165065a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16519566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1652a07cd24cSSatish Balay } 16539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16549566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16559c957beeSSatish Balay } else { 16569566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1657a07cd24cSSatish Balay } 16589566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16594f9cfa9eSBarry Smith 16604f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16614f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 1662e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1664e56f5c9eSBarry Smith } 16653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16660ac07820SSatish Balay } 166772dacd9aSBarry Smith 1668d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1669d71ae5a4SJacob Faibussowitsch { 16706f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1671131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1672131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16736f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16746f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16756f0a72daSMatthew G. Knepley PetscSF sf; 16766f0a72daSMatthew G. Knepley const PetscScalar *xx; 16776f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16786f0a72daSMatthew G. Knepley Vec xmask, lmask; 16796f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16806f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16816f0a72daSMatthew G. Knepley PetscScalar *aa; 16826f0a72daSMatthew G. Knepley 16836f0a72daSMatthew G. Knepley PetscFunctionBegin; 16846f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16866f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16886f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16896f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16905f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16915ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16929566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16935ba17502SJed Brown } 16946f0a72daSMatthew G. Knepley rrows[r].rank = p; 16956f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16966f0a72daSMatthew G. Knepley } 16979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16996f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17019566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 17036f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17049371c9d4SSatish Balay for (r = 0; r < n; ++r) 17059371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17066f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17079566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17086f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 17099566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17109566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17119566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17126f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17149566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17159566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17176f0a72daSMatthew G. Knepley if (x) { 17189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17209566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17219566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17226f0a72daSMatthew G. Knepley } 17239566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17246f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17256f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17266f0a72daSMatthew G. Knepley row = lrows[i]; 17276f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 17286f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs); 17296f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17306f0a72daSMatthew G. Knepley aa[0] = 0.0; 17316f0a72daSMatthew G. Knepley aa += bs; 17326f0a72daSMatthew G. Knepley } 17336f0a72daSMatthew G. Knepley } 17346f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17356f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17366f0a72daSMatthew G. Knepley row = i / bs; 17376f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17386f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17396f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17406f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17416f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k; 174289ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17436f0a72daSMatthew G. Knepley aa[0] = 0.0; 17446f0a72daSMatthew G. Knepley } 17456f0a72daSMatthew G. Knepley } 17466f0a72daSMatthew G. Knepley } 17476f0a72daSMatthew G. Knepley } 17486f0a72daSMatthew G. Knepley if (x) { 17499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17516f0a72daSMatthew G. Knepley } 17529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17549566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17554f9cfa9eSBarry Smith 17564f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17574f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 17584f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17591c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17604f9cfa9eSBarry Smith } 17613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17626f0a72daSMatthew G. Knepley } 17636f0a72daSMatthew G. Knepley 1764d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1765d71ae5a4SJacob Faibussowitsch { 1766bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1767d64ed03dSBarry Smith 1768d64ed03dSBarry Smith PetscFunctionBegin; 17699566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1771bb5a7306SBarry Smith } 1772bb5a7306SBarry Smith 17736849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17740ac07820SSatish Balay 1775d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1776d71ae5a4SJacob Faibussowitsch { 17777fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17787fc3c18eSBarry Smith Mat a, b, c, d; 1779ace3abfcSBarry Smith PetscBool flg; 17807fc3c18eSBarry Smith 17817fc3c18eSBarry Smith PetscFunctionBegin; 17829371c9d4SSatish Balay a = matA->A; 17839371c9d4SSatish Balay b = matA->B; 17849371c9d4SSatish Balay c = matB->A; 17859371c9d4SSatish Balay d = matB->B; 17867fc3c18eSBarry Smith 17879566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17891c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17917fc3c18eSBarry Smith } 17927fc3c18eSBarry Smith 1793d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1794d71ae5a4SJacob Faibussowitsch { 17953c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17963c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17973c896bc6SHong Zhang 17983c896bc6SHong Zhang PetscFunctionBegin; 17993c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18003c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18019566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 18023c896bc6SHong Zhang } else { 18039566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 18049566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18053c896bc6SHong Zhang } 18069566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18083c896bc6SHong Zhang } 1809273d9f13SBarry Smith 1810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1811d71ae5a4SJacob Faibussowitsch { 1812001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18134de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18144de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18154de5dceeSHong Zhang 18164de5dceeSHong Zhang PetscFunctionBegin; 18179566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18194de5dceeSHong Zhang } 18204de5dceeSHong Zhang 1821d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1822d71ae5a4SJacob Faibussowitsch { 18234fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18244fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18254fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1826b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18274fe895cdSHong Zhang 18284fe895cdSHong Zhang PetscFunctionBegin; 18294fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18304fe895cdSHong Zhang PetscScalar alpha = a; 18314fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18324fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18339566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1834792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18354fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18364fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18379566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1838792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18399566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1840ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18419566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18424fe895cdSHong Zhang } else { 18434de5dceeSHong Zhang Mat B; 18444de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18479566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18509566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18519566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18529566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18539566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18549566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18554de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18569566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18579566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18589566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18599566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18604fe895cdSHong Zhang } 18613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18624fe895cdSHong Zhang } 18634fe895cdSHong Zhang 1864d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1865d71ae5a4SJacob Faibussowitsch { 18665f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18675f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18682726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18692726fb6dSPierre Jolivet 18709566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18719566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18725f80ce2aSJacob Faibussowitsch } 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18742726fb6dSPierre Jolivet } 18752726fb6dSPierre Jolivet 1876d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1877d71ae5a4SJacob Faibussowitsch { 187899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187999cafbc1SBarry Smith 188099cafbc1SBarry Smith PetscFunctionBegin; 18819566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18829566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188499cafbc1SBarry Smith } 188599cafbc1SBarry Smith 1886d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1887d71ae5a4SJacob Faibussowitsch { 188899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188999cafbc1SBarry Smith 189099cafbc1SBarry Smith PetscFunctionBegin; 18919566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18929566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189499cafbc1SBarry Smith } 189599cafbc1SBarry Smith 1896d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1897d71ae5a4SJacob Faibussowitsch { 18984aa3045dSJed Brown IS iscol_local; 18994aa3045dSJed Brown PetscInt csize; 19004aa3045dSJed Brown 19014aa3045dSJed Brown PetscFunctionBegin; 19029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1903b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19049566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19055f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1906b79d0421SJed Brown } else { 19079566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1908b79d0421SJed Brown } 19099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 1910b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19119566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1913b79d0421SJed Brown } 19143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19154aa3045dSJed Brown } 191617df9f7cSHong Zhang 191782094794SBarry Smith /* 191882094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191982094794SBarry Smith in local and then by concatenating the local matrices the end result. 19207dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19218f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192282094794SBarry Smith */ 1923d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 1924d71ae5a4SJacob Faibussowitsch { 192582094794SBarry Smith PetscMPIInt rank, size; 192682094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1927c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 192829dcf524SDmitry Karpeev Mat M, Mreuse; 192982094794SBarry Smith MatScalar *vwork, *aa; 1930ce94432eSBarry Smith MPI_Comm comm; 193129dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193282094794SBarry Smith Mat_SeqBAIJ *aij; 193382094794SBarry Smith 193482094794SBarry Smith PetscFunctionBegin; 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 193829dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193929dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19409566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 19419566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194282094794SBarry Smith 194382094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19455f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 19469566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse)); 194782094794SBarry Smith } else { 19489566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse)); 194982094794SBarry Smith } 19509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195282094794SBarry Smith /* 195382094794SBarry Smith m - number of local rows 195482094794SBarry Smith n - number of columns (same on all processors) 195582094794SBarry Smith rstart - first row in new global matrix generated 195682094794SBarry Smith */ 19579566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19589566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195982094794SBarry Smith m = m / bs; 196082094794SBarry Smith n = n / bs; 196182094794SBarry Smith 196282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196382094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 196482094794SBarry Smith ii = aij->i; 196582094794SBarry Smith jj = aij->j; 196682094794SBarry Smith 196782094794SBarry Smith /* 196882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196982094794SBarry Smith portions of the matrix in order to do correct preallocation 197082094794SBarry Smith */ 197182094794SBarry Smith 197282094794SBarry Smith /* first get start and end of "diagonal" columns */ 197382094794SBarry Smith if (csize == PETSC_DECIDE) { 19749566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197582094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197682094794SBarry Smith nlocal = m; 197782094794SBarry Smith } else { 197882094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197982094794SBarry Smith } 198082094794SBarry Smith } else { 198182094794SBarry Smith nlocal = csize / bs; 198282094794SBarry Smith } 19839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 198482094794SBarry Smith rstart = rend - nlocal; 1985aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198682094794SBarry Smith 198782094794SBarry Smith /* next, compute all the lengths */ 19889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198982094794SBarry Smith for (i = 0; i < m; i++) { 199082094794SBarry Smith jend = ii[i + 1] - ii[i]; 199182094794SBarry Smith olen = 0; 199282094794SBarry Smith dlen = 0; 199382094794SBarry Smith for (j = 0; j < jend; j++) { 199482094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199582094794SBarry Smith else dlen++; 199682094794SBarry Smith jj++; 199782094794SBarry Smith } 199882094794SBarry Smith olens[i] = olen; 199982094794SBarry Smith dlens[i] = dlen; 200082094794SBarry Smith } 20019566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 20039566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 20049566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20059566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20069566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200782094794SBarry Smith } else { 200882094794SBarry Smith PetscInt ml, nl; 200982094794SBarry Smith 201082094794SBarry Smith M = *newmat; 20119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20125f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20139566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 201482094794SBarry Smith /* 201582094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201682094794SBarry Smith rather than the slower MatSetValues(). 201782094794SBarry Smith */ 201882094794SBarry Smith M->was_assembled = PETSC_TRUE; 201982094794SBarry Smith M->assembled = PETSC_FALSE; 202082094794SBarry Smith } 20219566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202382094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 202482094794SBarry Smith ii = aij->i; 202582094794SBarry Smith jj = aij->j; 202682094794SBarry Smith aa = aij->a; 202782094794SBarry Smith for (i = 0; i < m; i++) { 202882094794SBarry Smith row = rstart / bs + i; 202982094794SBarry Smith nz = ii[i + 1] - ii[i]; 20309371c9d4SSatish Balay cwork = jj; 20319371c9d4SSatish Balay jj += nz; 20329371c9d4SSatish Balay vwork = aa; 20339371c9d4SSatish Balay aa += nz * bs * bs; 20349566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203582094794SBarry Smith } 203682094794SBarry Smith 20379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203982094794SBarry Smith *newmat = M; 204082094794SBarry Smith 204182094794SBarry Smith /* save submatrix used in processor for next request */ 204282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20439566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20449566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204582094794SBarry Smith } 20463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204782094794SBarry Smith } 204882094794SBarry Smith 2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2050d71ae5a4SJacob Faibussowitsch { 205182094794SBarry Smith MPI_Comm comm, pcomm; 2052a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205382094794SBarry Smith const PetscInt *rows; 2054dbf0e21dSBarry Smith PetscMPIInt size; 2055a0a83eb5SRémi Lacroix IS crowp, lcolp; 205682094794SBarry Smith 205782094794SBarry Smith PetscFunctionBegin; 20589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205982094794SBarry Smith /* make a collective version of 'rowp' */ 20609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 206182094794SBarry Smith if (pcomm == comm) { 206282094794SBarry Smith crowp = rowp; 206382094794SBarry Smith } else { 20649566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206882094794SBarry Smith } 20699566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2070a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2073dbf0e21dSBarry Smith if (size == 1) { 207482094794SBarry Smith lcolp = colp; 207582094794SBarry Smith } else { 20769566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207782094794SBarry Smith } 20789566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207975f6568bSJed Brown /* now we just get the submatrix */ 20809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 20819566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B)); 2082a0a83eb5SRémi Lacroix /* clean up */ 208348a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 208448a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208682094794SBarry Smith } 208782094794SBarry Smith 2088d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2089d71ae5a4SJacob Faibussowitsch { 20908c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20918c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20928c7482ecSBarry Smith 20938c7482ecSBarry Smith PetscFunctionBegin; 209426fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209526fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20978c7482ecSBarry Smith } 20988c7482ecSBarry Smith 2099d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2100d71ae5a4SJacob Faibussowitsch { 2101f6d58c54SBarry Smith Mat B; 2102f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2103f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2104f6d58c54SBarry Smith Mat_SeqAIJ *b; 2105f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2106f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2107f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2108f6d58c54SBarry Smith 2109f6d58c54SBarry Smith PetscFunctionBegin; 21109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2112f6d58c54SBarry Smith 21132ef1f0ffSBarry Smith /* Tell every processor the number of nonzeros per row */ 21149566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2115ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2117f6d58c54SBarry Smith displs = recvcounts + size; 2118f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2119f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2120f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2121f6d58c54SBarry Smith } 21229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21232ef1f0ffSBarry Smith /* Create the sequential matrix of the same type as the local block diagonal */ 21249566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21259566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21269566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21279566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2128f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2129f6d58c54SBarry Smith 21302ef1f0ffSBarry Smith /* Copy my part of matrix column indices over */ 2131f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2132f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2133f6d58c54SBarry Smith a_jsendbuf = ad->j; 2134f6d58c54SBarry Smith b_jsendbuf = bd->j; 2135f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2136f6d58c54SBarry Smith cnt = 0; 2137f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2138f6d58c54SBarry Smith /* put in lower diagonal portion */ 2139f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2140f6d58c54SBarry Smith while (m > 0) { 2141f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2142f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2143f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2144f6d58c54SBarry Smith m--; 2145f6d58c54SBarry Smith } 2146f6d58c54SBarry Smith 2147f6d58c54SBarry Smith /* put in diagonal portion */ 2148ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2149f6d58c54SBarry Smith 2150f6d58c54SBarry Smith /* put in upper diagonal portion */ 2151ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2152f6d58c54SBarry Smith } 21535f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2154f6d58c54SBarry Smith 21552ef1f0ffSBarry Smith /* Gather all column indices to all processors */ 2156f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2157f6d58c54SBarry Smith recvcounts[i] = 0; 2158ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2159f6d58c54SBarry Smith } 2160f6d58c54SBarry Smith displs[0] = 0; 2161ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 21632ef1f0ffSBarry Smith /* Assemble the matrix into useable form (note numerical values not yet set) */ 2164f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21659566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2166f6d58c54SBarry Smith /* set the b->i indices */ 2167f6d58c54SBarry Smith b->i[0] = 0; 2168ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21699566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21729566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2173f6d58c54SBarry Smith 2174b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2175f6d58c54SBarry Smith *newmat = B; 21763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2177f6d58c54SBarry Smith } 2178f6d58c54SBarry Smith 2179d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2180d71ae5a4SJacob Faibussowitsch { 2181b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2182f4259b30SLisandro Dalcin Vec bb1 = NULL; 2183b1a666ecSBarry Smith 2184b1a666ecSBarry Smith PetscFunctionBegin; 2185b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2188b1a666ecSBarry Smith } 2189b1a666ecSBarry Smith 219048a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21914e980039SJed Brown 2192b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2193b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21949566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2195b1a666ecSBarry Smith its--; 2196b1a666ecSBarry Smith } 2197b1a666ecSBarry Smith 2198b1a666ecSBarry Smith while (its--) { 21999566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22009566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2201b1a666ecSBarry Smith 2202b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22039566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22049566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2205b1a666ecSBarry Smith 2206b1a666ecSBarry Smith /* local sweep */ 22079566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2208b1a666ecSBarry Smith } 2209b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2210b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22119566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2212b1a666ecSBarry Smith its--; 2213b1a666ecSBarry Smith } 2214b1a666ecSBarry Smith while (its--) { 22159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22169566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2217b1a666ecSBarry Smith 2218b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22199566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22209566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2221b1a666ecSBarry Smith 2222b1a666ecSBarry Smith /* local sweep */ 22239566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2224b1a666ecSBarry Smith } 2225b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2226b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22279566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2228b1a666ecSBarry Smith its--; 2229b1a666ecSBarry Smith } 2230b1a666ecSBarry Smith while (its--) { 22319566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22329566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2233b1a666ecSBarry Smith 2234b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22359566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22369566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2237b1a666ecSBarry Smith 2238b1a666ecSBarry Smith /* local sweep */ 22399566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2240b1a666ecSBarry Smith } 2241ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2242b1a666ecSBarry Smith 22439566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2245b1a666ecSBarry Smith } 2246b1a666ecSBarry Smith 2247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2248d71ae5a4SJacob Faibussowitsch { 224947f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2250a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 225147f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 225247f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 225347f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 225447f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 225547f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 225647f7623dSRémi Lacroix PetscReal *work; 225747f7623dSRémi Lacroix 225847f7623dSRémi Lacroix PetscFunctionBegin; 22599566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22609566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2261857cbf51SRichard Tran Mills if (type == NORM_2) { 226247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 226347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 226647f7623dSRémi Lacroix a_val++; 226747f7623dSRémi Lacroix } 226847f7623dSRémi Lacroix } 226947f7623dSRémi Lacroix } 227047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 227147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 227447f7623dSRémi Lacroix b_val++; 227547f7623dSRémi Lacroix } 227647f7623dSRémi Lacroix } 227747f7623dSRémi Lacroix } 2278857cbf51SRichard Tran Mills } else if (type == NORM_1) { 227947f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 228047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228247f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 228347f7623dSRémi Lacroix a_val++; 228447f7623dSRémi Lacroix } 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix } 228747f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229047f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 229147f7623dSRémi Lacroix b_val++; 229247f7623dSRémi Lacroix } 229347f7623dSRémi Lacroix } 229447f7623dSRémi Lacroix } 2295857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 229647f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229947f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 230047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 230147f7623dSRémi Lacroix a_val++; 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix } 230447f7623dSRémi Lacroix } 230547f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 230647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230847f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 230947f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 231047f7623dSRémi Lacroix b_val++; 231147f7623dSRémi Lacroix } 231247f7623dSRémi Lacroix } 231347f7623dSRémi Lacroix } 2314857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2315a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2316a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2317a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2318857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2319a873a8cdSSam Reynolds a_val++; 2320a873a8cdSSam Reynolds } 2321a873a8cdSSam Reynolds } 2322a873a8cdSSam Reynolds } 2323a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2324a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2325a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2326857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2327a873a8cdSSam Reynolds b_val++; 2328a873a8cdSSam Reynolds } 2329a873a8cdSSam Reynolds } 2330a873a8cdSSam Reynolds } 2331857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2332857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2333857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2334857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2335857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2336857cbf51SRichard Tran Mills a_val++; 2337857cbf51SRichard Tran Mills } 2338857cbf51SRichard Tran Mills } 2339857cbf51SRichard Tran Mills } 2340857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2341857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2342857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2343857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2344857cbf51SRichard Tran Mills b_val++; 2345857cbf51SRichard Tran Mills } 2346857cbf51SRichard Tran Mills } 2347857cbf51SRichard Tran Mills } 2348857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2349857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 235147f7623dSRémi Lacroix } else { 23521c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 235347f7623dSRémi Lacroix } 23549566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2355857cbf51SRichard Tran Mills if (type == NORM_2) { 2356a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2357857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2358a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 235947f7623dSRémi Lacroix } 23603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 236147f7623dSRémi Lacroix } 236247f7623dSRémi Lacroix 2363d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2364d71ae5a4SJacob Faibussowitsch { 2365bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2366bbead8a2SBarry Smith 2367bbead8a2SBarry Smith PetscFunctionBegin; 23689566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23697b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23707b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23717b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2373bbead8a2SBarry Smith } 2374bbead8a2SBarry Smith 2375d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2376d71ae5a4SJacob Faibussowitsch { 23777d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23786f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23797d68702bSBarry Smith 23807d68702bSBarry Smith PetscFunctionBegin; 23816f33a894SBarry Smith if (!Y->preallocated) { 23829566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23836f33a894SBarry Smith } else if (!aij->nz) { 2384b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23859566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2386b83222d8SBarry Smith aij->nonew = nonew; 23877d68702bSBarry Smith } 23889566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 23907d68702bSBarry Smith } 23918c7482ecSBarry Smith 2392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2393d71ae5a4SJacob Faibussowitsch { 23943b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23953b49f96aSBarry Smith 23963b49f96aSBarry Smith PetscFunctionBegin; 23975f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23989566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23993b49f96aSBarry Smith if (d) { 24003b49f96aSBarry Smith PetscInt rstart; 24019566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24023b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24033b49f96aSBarry Smith } 24043ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24053b49f96aSBarry Smith } 24063b49f96aSBarry Smith 2407d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2408d71ae5a4SJacob Faibussowitsch { 2409a5b7ff6bSBarry Smith PetscFunctionBegin; 2410a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24113ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2412a5b7ff6bSBarry Smith } 2413a5b7ff6bSBarry Smith 24143964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2415cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2416cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2417cc2dc46cSBarry Smith MatMult_MPIBAIJ, 241897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24197c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24207c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2421f4259b30SLisandro Dalcin NULL, 2422f4259b30SLisandro Dalcin NULL, 2423f4259b30SLisandro Dalcin NULL, 2424f4259b30SLisandro Dalcin /*10*/ NULL, 2425f4259b30SLisandro Dalcin NULL, 2426f4259b30SLisandro Dalcin NULL, 2427b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2428cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 242997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24307fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2431cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2432cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2433cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 243497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2435cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2436cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2437cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2438d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2439f4259b30SLisandro Dalcin NULL, 2440f4259b30SLisandro Dalcin NULL, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 244326cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2444f4259b30SLisandro Dalcin NULL, 2445f4259b30SLisandro Dalcin NULL, 2446a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2447f4259b30SLisandro Dalcin NULL, 2448d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2449f4259b30SLisandro Dalcin NULL, 2450f4259b30SLisandro Dalcin NULL, 2451f4259b30SLisandro Dalcin NULL, 2452f4259b30SLisandro Dalcin NULL, 2453d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24547dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2455cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2456cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24573c896bc6SHong Zhang MatCopy_MPIBAIJ, 2458f4259b30SLisandro Dalcin /*44*/ NULL, 2459cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24607d68702bSBarry Smith MatShift_MPIBAIJ, 2461f4259b30SLisandro Dalcin NULL, 24626f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2463f4259b30SLisandro Dalcin /*49*/ NULL, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin NULL, 2466f4259b30SLisandro Dalcin NULL, 2467f4259b30SLisandro Dalcin NULL, 246893dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2469f4259b30SLisandro Dalcin NULL, 2470cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 247182094794SBarry Smith MatPermute_MPIBAIJ, 2472cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24737dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2474f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2475f14a1c24SBarry Smith MatView_MPIBAIJ, 2476f4259b30SLisandro Dalcin NULL, 2477f4259b30SLisandro Dalcin NULL, 2478f4259b30SLisandro Dalcin /*64*/ NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin NULL, 2481f4259b30SLisandro Dalcin NULL, 2482f4259b30SLisandro Dalcin NULL, 2483d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2484f4259b30SLisandro Dalcin NULL, 2485f4259b30SLisandro Dalcin NULL, 2486f4259b30SLisandro Dalcin NULL, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin /*74*/ NULL, 2489f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin /*79*/ NULL, 2494f4259b30SLisandro Dalcin NULL, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 24975bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2498f4259b30SLisandro Dalcin /*84*/ NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin /*89*/ NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin /*94*/ NULL, 2509f4259b30SLisandro Dalcin NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin /*99*/ NULL, 2514f4259b30SLisandro Dalcin NULL, 2515f4259b30SLisandro Dalcin NULL, 25162726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin /*104*/ NULL, 251999cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25208c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin /*109*/ NULL, 2524f4259b30SLisandro Dalcin NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 25273b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2528d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2529f4259b30SLisandro Dalcin NULL, 25304683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2531f4259b30SLisandro Dalcin NULL, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin /*119*/ NULL, 2534f4259b30SLisandro Dalcin NULL, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2538f4259b30SLisandro Dalcin /*124*/ NULL, 2539a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25403964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2541f4259b30SLisandro Dalcin NULL, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin /*129*/ NULL, 2544f4259b30SLisandro Dalcin NULL, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin NULL, 2547f4259b30SLisandro Dalcin NULL, 2548f4259b30SLisandro Dalcin /*134*/ NULL, 2549f4259b30SLisandro Dalcin NULL, 2550f4259b30SLisandro Dalcin NULL, 2551f4259b30SLisandro Dalcin NULL, 2552f4259b30SLisandro Dalcin NULL, 255346533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2554f4259b30SLisandro Dalcin NULL, 2555f4259b30SLisandro Dalcin NULL, 2556bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2557f4259b30SLisandro Dalcin NULL, 2558d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2559d70f29a3SPierre Jolivet NULL, 2560d70f29a3SPierre Jolivet NULL, 256199a7f59eSMark Adams NULL, 256299a7f59eSMark Adams NULL, 25637fb60732SBarry Smith NULL, 2564dec0b466SHong Zhang /*150*/ NULL, 2565dec0b466SHong Zhang NULL}; 256679bdfe76SSatish Balay 2567cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2568c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2569d94109b8SHong Zhang 2570d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2571d71ae5a4SJacob Faibussowitsch { 2572b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2573f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2574f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2575f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2576d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25773bd0feecSPierre Jolivet PetscBool nooffprocentries; 2578aac34f13SBarry Smith 2579aac34f13SBarry Smith PetscFunctionBegin; 25809566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25819566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25829566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25839566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25849566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2585d0f46423SBarry Smith m = B->rmap->n / bs; 2586d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2587d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2588d0f46423SBarry Smith cend = B->cmap->rend / bs; 2589b8d659d7SLisandro Dalcin 25905f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25919566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2592aac34f13SBarry Smith for (i = 0; i < m; i++) { 2593cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25945f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2595b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 259637cd3c0dSBarry Smith dlen = 0; 259737cd3c0dSBarry Smith olen = 0; 2598cf12db73SBarry Smith JJ = jj + ii[i]; 2599b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 260037cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 260137cd3c0dSBarry Smith else dlen++; 2602aac34f13SBarry Smith JJ++; 2603aac34f13SBarry Smith } 260437cd3c0dSBarry Smith d_nnz[i] = dlen; 260537cd3c0dSBarry Smith o_nnz[i] = olen; 2606aac34f13SBarry Smith } 26079566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26089566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2609aac34f13SBarry Smith 2610b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 261148a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2612b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2613b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2614cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2615cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2616bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2617cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26189566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26193adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26203adadaf3SJed Brown PetscInt j; 26213adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26223adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26239566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26243adadaf3SJed Brown } 26253adadaf3SJed Brown } 2626aac34f13SBarry Smith } 2627aac34f13SBarry Smith 26289566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26293bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26303bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26333bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26343bd0feecSPierre Jolivet 26359566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2637aac34f13SBarry Smith } 2638aac34f13SBarry Smith 2639aac34f13SBarry Smith /*@C 264011a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2641aac34f13SBarry Smith 2642d083f849SBarry Smith Collective 2643aac34f13SBarry Smith 2644aac34f13SBarry Smith Input Parameters: 26451c4f3114SJed Brown + B - the matrix 2646dfb205c3SBarry Smith . bs - the block size 2647*20f4b53cSBarry Smith . i - the indices into `j` for the start of each local row (starts with zero) 2648aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2649aac34f13SBarry Smith - v - optional values in the matrix 2650aac34f13SBarry Smith 2651664954b6SBarry Smith Level: advanced 2652aac34f13SBarry Smith 265395452b02SPatrick Sanan Notes: 265411a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 265511a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26563adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 265711a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26583adadaf3SJed Brown block column and the second index is over columns within a block. 26593adadaf3SJed Brown 2660664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2661664954b6SBarry Smith 266267be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2663aac34f13SBarry Smith @*/ 2664d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2665d71ae5a4SJacob Faibussowitsch { 2666aac34f13SBarry Smith PetscFunctionBegin; 26676ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26686ba663aaSJed Brown PetscValidType(B, 1); 26696ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2670cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2672aac34f13SBarry Smith } 2673aac34f13SBarry Smith 2674d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2675d71ae5a4SJacob Faibussowitsch { 2676ad79cf63SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 2677535b19f3SBarry Smith PetscInt i; 26785d2a9ed1SStefano Zampini PetscMPIInt size; 2679a23d5eceSKris Buschelman 2680a23d5eceSKris Buschelman PetscFunctionBegin; 2681ad79cf63SBarry Smith if (B->hash_active) { 2682ad79cf63SBarry Smith PetscCall(PetscMemcpy(&B->ops, &b->cops, sizeof(*(B->ops)))); 2683ad79cf63SBarry Smith B->hash_active = PETSC_FALSE; 2684ad79cf63SBarry Smith } 2685ad79cf63SBarry Smith if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 26869566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 26879566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26889566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26899566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2690899cda47SBarry Smith 2691a23d5eceSKris Buschelman if (d_nnz) { 2692ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2693a23d5eceSKris Buschelman } 2694a23d5eceSKris Buschelman if (o_nnz) { 2695ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2696a23d5eceSKris Buschelman } 2697a23d5eceSKris Buschelman 2698a23d5eceSKris Buschelman b->bs2 = bs * bs; 2699d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2700d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2701d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2702d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2703a23d5eceSKris Buschelman 2704ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2705d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2706d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2707d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2708d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2709a23d5eceSKris Buschelman 2710cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2711eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2712cb7b82ddSBarry Smith #else 27139566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2714cb7b82ddSBarry Smith #endif 27159566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27179566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2718cb7b82ddSBarry Smith 27199566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 27209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27219566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27229566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27239566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2724cb7b82ddSBarry Smith 2725ad79cf63SBarry Smith PetscCall(MatDestroy(&b->A)); 27269566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27279566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27289566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 2729a23d5eceSKris Buschelman 27309566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27319566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2732526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2733cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2734cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2736a23d5eceSKris Buschelman } 2737a23d5eceSKris Buschelman 27387087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27397087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27405bf65638SKris Buschelman 2741d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2742d71ae5a4SJacob Faibussowitsch { 274382094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 274482094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 274582094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 274682094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 274782094794SBarry Smith 274882094794SBarry Smith PetscFunctionBegin; 27499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 275082094794SBarry Smith ii[0] = 0; 275182094794SBarry Smith for (i = 0; i < M; i++) { 275208401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 275308401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 275482094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27555ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27565ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27579371c9d4SSatish Balay if (jd[j] == i) { 27589371c9d4SSatish Balay ii[i + 1]--; 27599371c9d4SSatish Balay break; 27609371c9d4SSatish Balay } 27615ee9ba1cSJed Brown } 276282094794SBarry Smith } 27639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 276482094794SBarry Smith cnt = 0; 276582094794SBarry Smith for (i = 0; i < M; i++) { 276682094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 276782094794SBarry Smith if (garray[jo[j]] > rstart) break; 276882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 276982094794SBarry Smith } 277082094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2771ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 277282094794SBarry Smith } 2773ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 277482094794SBarry Smith } 27759566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 277782094794SBarry Smith } 277882094794SBarry Smith 2779c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 278062471d69SBarry Smith 2781cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2782b2573a8aSBarry Smith 2783d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2784d71ae5a4SJacob Faibussowitsch { 278562471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 278685a69837SSatish Balay Mat_MPIAIJ *b; 27875f80ce2aSJacob Faibussowitsch Mat B; 278862471d69SBarry Smith 278962471d69SBarry Smith PetscFunctionBegin; 27905f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 279162471d69SBarry Smith 27920f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27930f6d62edSLisandro Dalcin B = *newmat; 27940f6d62edSLisandro Dalcin } else { 27959566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 27969566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 27979566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 27989566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 27999566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28009566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28010f6d62edSLisandro Dalcin } 280262471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 280362471d69SBarry Smith 28040f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28059566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28069566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28070f6d62edSLisandro Dalcin } else { 2808539ef8ebSBarry Smith PetscBool3 sym = A->symmetric, hermitian = A->hermitian, structurally_symmetric = A->structurally_symmetric, spd = A->spd; 28099566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28109566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28119566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(A)); 28129566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28139566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28149566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 28159566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 2816539ef8ebSBarry Smith A->symmetric = sym; 2817539ef8ebSBarry Smith A->hermitian = hermitian; 2818539ef8ebSBarry Smith A->structurally_symmetric = structurally_symmetric; 2819539ef8ebSBarry Smith A->spd = spd; 28200f6d62edSLisandro Dalcin } 28219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28230f6d62edSLisandro Dalcin 2824511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28259566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 282662471d69SBarry Smith } else { 282762471d69SBarry Smith *newmat = B; 282862471d69SBarry Smith } 28293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 283062471d69SBarry Smith } 283162471d69SBarry Smith 28320bad9183SKris Buschelman /*MC 2833fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28340bad9183SKris Buschelman 28350bad9183SKris Buschelman Options Database Keys: 283611a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28378c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28386679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 283967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28400bad9183SKris Buschelman 28410bad9183SKris Buschelman Level: beginner 28420cd7f59aSBarry Smith 284311a5261eSBarry Smith Note: 284411a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 284511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28460bad9183SKris Buschelman 284767be906fSBarry Smith .seealso: `Mat`, MATBAIJ`, MATSEQBAIJ`, `MatCreateBAIJ` 28480bad9183SKris Buschelman M*/ 28490bad9183SKris Buschelman 2850cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2851c0cdd4a1SDahai Guo 2852d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2853d71ae5a4SJacob Faibussowitsch { 2854273d9f13SBarry Smith Mat_MPIBAIJ *b; 285594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2856273d9f13SBarry Smith 2857273d9f13SBarry Smith PetscFunctionBegin; 28584dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 285982502324SSatish Balay B->data = (void *)b; 286082502324SSatish Balay 28619566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 2862273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2863273d9f13SBarry Smith 2864273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28659566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28669566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2867273d9f13SBarry Smith 2868273d9f13SBarry Smith /* build local table of row and column ownerships */ 28699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2870273d9f13SBarry Smith 2871273d9f13SBarry Smith /* build cache for off array entries formed */ 28729566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 287326fbe8dcSKarl Rupp 2874273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28750298fd71SBarry Smith b->colmap = NULL; 28760298fd71SBarry Smith b->garray = NULL; 2877273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2878273d9f13SBarry Smith 2879273d9f13SBarry Smith /* stuff used in block assembly */ 2880f4259b30SLisandro Dalcin b->barray = NULL; 2881273d9f13SBarry Smith 2882273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2883f4259b30SLisandro Dalcin b->lvec = NULL; 2884f4259b30SLisandro Dalcin b->Mvctx = NULL; 2885273d9f13SBarry Smith 2886273d9f13SBarry Smith /* stuff for MatGetRow() */ 2887f4259b30SLisandro Dalcin b->rowindices = NULL; 2888f4259b30SLisandro Dalcin b->rowvalues = NULL; 2889273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith /* hash table stuff */ 2892f4259b30SLisandro Dalcin b->ht = NULL; 2893f4259b30SLisandro Dalcin b->hd = NULL; 2894273d9f13SBarry Smith b->ht_size = 0; 2895273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2896273d9f13SBarry Smith b->ht_fact = 0; 2897273d9f13SBarry Smith b->ht_total_ct = 0; 2898273d9f13SBarry Smith b->ht_insert_ct = 0; 2899273d9f13SBarry Smith 29007dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29017a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29027a868f3eSHong Zhang 29039566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29049566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29059566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29067ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29079566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29087ea3e4caSstefano_zampini #endif 29099566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29109566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29119566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29129566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29169566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 291794ae4db5SBarry Smith 2918d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29199566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 292094ae4db5SBarry Smith if (flg) { 292194ae4db5SBarry Smith PetscReal fact = 1.39; 29229566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29239566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 292494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29259566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29269566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 292794ae4db5SBarry Smith } 2928d0609cedSBarry Smith PetscOptionsEnd(); 29293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2930273d9f13SBarry Smith } 2931273d9f13SBarry Smith 2932209238afSKris Buschelman /*MC 2933002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2934209238afSKris Buschelman 293511a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 293611a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2937209238afSKris Buschelman 2938209238afSKris Buschelman Options Database Keys: 293911a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2940209238afSKris Buschelman 2941209238afSKris Buschelman Level: beginner 2942209238afSKris Buschelman 294367be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2944209238afSKris Buschelman M*/ 2945209238afSKris Buschelman 2946273d9f13SBarry Smith /*@C 294711a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 294867be906fSBarry Smith (block compressed row). 2949273d9f13SBarry Smith 2950c3339decSBarry Smith Collective 2951273d9f13SBarry Smith 2952273d9f13SBarry Smith Input Parameters: 29531c4f3114SJed Brown + B - the matrix 295411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 295567be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2956273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2957273d9f13SBarry Smith submatrix (same for all local rows) 2958273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2959273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 296067be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 296195742e49SBarry Smith set it even if it is zero. 2962273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2963273d9f13SBarry Smith submatrix (same for all local rows). 2964273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2965273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 296667be906fSBarry Smith each block row) or `NULL`. 2967273d9f13SBarry Smith 296849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2969273d9f13SBarry Smith 2970273d9f13SBarry Smith Options Database Keys: 29718c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 297267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2973273d9f13SBarry Smith 297467be906fSBarry Smith Level: intermediate 297567be906fSBarry Smith 2976273d9f13SBarry Smith Notes: 297767be906fSBarry Smith For good matrix assembly performance 297867be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 297967be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 298067be906fSBarry Smith performance can be increased by more than a factor of 50. 298167be906fSBarry Smith 298211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2983273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2984273d9f13SBarry Smith 2985273d9f13SBarry Smith Storage Information: 2986273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2987273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2988273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2989273d9f13SBarry Smith local matrix (a rectangular submatrix). 2990273d9f13SBarry Smith 2991273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 299267be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 299367be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 2994273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 299567be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 2996273d9f13SBarry Smith 2997273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2998273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2999273d9f13SBarry Smith 3000273d9f13SBarry Smith .vb 3001273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3002a4b1a0f6SJed Brown -------------------------- 3003273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3004273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3005273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3006a4b1a0f6SJed Brown -------------------------- 3007273d9f13SBarry Smith .ve 3008273d9f13SBarry Smith 3009273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3010273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3011273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 301211a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3013273d9f13SBarry Smith 301467be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 301567be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3016273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3017*20f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 3018273d9f13SBarry Smith 301911a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3020aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 302167be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3022aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3023aa95bbe8SBarry Smith 302467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3025273d9f13SBarry Smith @*/ 3026d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3027d71ae5a4SJacob Faibussowitsch { 3028273d9f13SBarry Smith PetscFunctionBegin; 30296ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30306ba663aaSJed Brown PetscValidType(B, 1); 30316ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3032cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3034273d9f13SBarry Smith } 3035273d9f13SBarry Smith 303679bdfe76SSatish Balay /*@C 303711a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 303867be906fSBarry Smith (block compressed row). 303979bdfe76SSatish Balay 3040d083f849SBarry Smith Collective 3041db81eaa0SLois Curfman McInnes 304279bdfe76SSatish Balay Input Parameters: 3043db81eaa0SLois Curfman McInnes + comm - MPI communicator 304411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 304511a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 304611a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 304792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 304892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 304911a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 305092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 305192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 305211a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 305311a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 305447a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 305579bdfe76SSatish Balay submatrix (same for all local rows) 305647a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 305792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30580298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 305995742e49SBarry Smith and set it even if it is zero. 306047a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 306179bdfe76SSatish Balay submatrix (same for all local rows). 306247a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 306392e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30640298fd71SBarry Smith each block row) or NULL. 306579bdfe76SSatish Balay 306679bdfe76SSatish Balay Output Parameter: 306779bdfe76SSatish Balay . A - the matrix 306879bdfe76SSatish Balay 3069db81eaa0SLois Curfman McInnes Options Database Keys: 30708c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 307167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30723ffaccefSLois Curfman McInnes 307367be906fSBarry Smith Level: intermediate 307467be906fSBarry Smith 307567be906fSBarry Smith Notes: 307667be906fSBarry Smith For good matrix assembly performance 307767be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 307867be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 307967be906fSBarry Smith performance can be increased by more than a factor of 50. 308067be906fSBarry Smith 308111a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 3082f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 308311a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 3084175b88e8SBarry Smith 308549a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 308649a6f317SBarry Smith 308747a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 308847a75d0bSBarry Smith 308979bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 309079bdfe76SSatish Balay (possibly both). 309179bdfe76SSatish Balay 309211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3093be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3094be79a94dSBarry Smith 309579bdfe76SSatish Balay Storage Information: 309679bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 309779bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 309879bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 309979bdfe76SSatish Balay local matrix (a rectangular submatrix). 310079bdfe76SSatish Balay 310179bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 310279bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 310367be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 310479bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 310567be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 310679bdfe76SSatish Balay 310779bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 310879bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 310979bdfe76SSatish Balay 3110db81eaa0SLois Curfman McInnes .vb 3111db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3112a4b1a0f6SJed Brown -------------------------- 3113db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3114db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3115db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3116a4b1a0f6SJed Brown -------------------------- 3117db81eaa0SLois Curfman McInnes .ve 311879bdfe76SSatish Balay 311979bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 312079bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 312179bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 312211a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 312379bdfe76SSatish Balay 312467be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 312567be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 312679bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 3127*20f4b53cSBarry Smith one expects `d_nz` >> `o_nz`. 312879bdfe76SSatish Balay 312967be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 313079bdfe76SSatish Balay @*/ 3131d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3132d71ae5a4SJacob Faibussowitsch { 3133b24ad042SBarry Smith PetscMPIInt size; 313479bdfe76SSatish Balay 3135d64ed03dSBarry Smith PetscFunctionBegin; 31369566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31379566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3139273d9f13SBarry Smith if (size > 1) { 31409566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31419566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3142273d9f13SBarry Smith } else { 31439566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31449566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31453914022bSBarry Smith } 31463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 314779bdfe76SSatish Balay } 3148026e39d0SSatish Balay 3149d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3150d71ae5a4SJacob Faibussowitsch { 31510ac07820SSatish Balay Mat mat; 31520ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3153b24ad042SBarry Smith PetscInt len = 0; 31540ac07820SSatish Balay 3155d64ed03dSBarry Smith PetscFunctionBegin; 3156f4259b30SLisandro Dalcin *newmat = NULL; 31579566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31589566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31599566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31607fff6886SHong Zhang 3161d5f3da31SBarry Smith mat->factortype = matin->factortype; 3162273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31630ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31647fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31657fff6886SHong Zhang 3166273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3167d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31680ac07820SSatish Balay a->bs2 = oldmat->bs2; 31690ac07820SSatish Balay a->mbs = oldmat->mbs; 31700ac07820SSatish Balay a->nbs = oldmat->nbs; 31710ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31720ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31730ac07820SSatish Balay 31749566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 31759566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3176899cda47SBarry Smith 31770ac07820SSatish Balay a->size = oldmat->size; 31780ac07820SSatish Balay a->rank = oldmat->rank; 3179aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3180aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3181f4259b30SLisandro Dalcin a->rowindices = NULL; 3182f4259b30SLisandro Dalcin a->rowvalues = NULL; 31830ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3184f4259b30SLisandro Dalcin a->barray = NULL; 3185899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3186899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3187899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3188899cda47SBarry Smith a->cendbs = oldmat->cendbs; 31890ac07820SSatish Balay 3190133cdb44SSatish Balay /* hash table stuff */ 3191f4259b30SLisandro Dalcin a->ht = NULL; 3192f4259b30SLisandro Dalcin a->hd = NULL; 3193133cdb44SSatish Balay a->ht_size = 0; 3194133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 319525fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3196133cdb44SSatish Balay a->ht_total_ct = 0; 3197133cdb44SSatish Balay a->ht_insert_ct = 0; 3198133cdb44SSatish Balay 31999566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32000ac07820SSatish Balay if (oldmat->colmap) { 3201aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3202eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 320348e59246SSatish Balay #else 32049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32059566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 320648e59246SSatish Balay #endif 3207f4259b30SLisandro Dalcin } else a->colmap = NULL; 32084beb1cfeSHong Zhang 32090ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 32109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32119566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3212f4259b30SLisandro Dalcin } else a->garray = NULL; 32130ac07820SSatish Balay 32149566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32159566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32169566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32177fff6886SHong Zhang 32189566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32199566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 32209566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32210ac07820SSatish Balay *newmat = mat; 32223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32230ac07820SSatish Balay } 322457b952d6SSatish Balay 3225618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3226d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3227d71ae5a4SJacob Faibussowitsch { 3228b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3229b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3230b51a4376SLisandro Dalcin PetscScalar *matvals; 3231b51a4376SLisandro Dalcin 3232b51a4376SLisandro Dalcin PetscFunctionBegin; 32339566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3234b51a4376SLisandro Dalcin 3235b51a4376SLisandro Dalcin /* read in matrix header */ 32369566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32375f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32389371c9d4SSatish Balay M = header[1]; 32399371c9d4SSatish Balay N = header[2]; 32409371c9d4SSatish Balay nz = header[3]; 32415f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32425f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32435f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3244b51a4376SLisandro Dalcin 3245b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32469566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3247618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3248618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3249618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3250b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3251b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3252b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32539566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32549566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3255b51a4376SLisandro Dalcin 3256b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32579566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32585f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32599566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32609566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32619566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32629566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32639371c9d4SSatish Balay mbs = m / bs; 32649371c9d4SSatish Balay nbs = n / bs; 3265b51a4376SLisandro Dalcin 3266b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32689566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32699371c9d4SSatish Balay rowidxs[0] = 0; 32709371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32711c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32725f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3273b51a4376SLisandro Dalcin 3274b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32759566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32769566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32779566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3278b51a4376SLisandro Dalcin 3279b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3280b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3281b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3282618cc2edSLisandro Dalcin PetscBool sbaij, done; 3283b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3284b51a4376SLisandro Dalcin 32859566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 32869566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 32879566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 32889566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3289b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 32909566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 32919566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3292618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3293618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3294618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3295618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3296618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3297618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3298618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3299b51a4376SLisandro Dalcin } else { 33009566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3301b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3302b51a4376SLisandro Dalcin } 3303b51a4376SLisandro Dalcin } 3304618cc2edSLisandro Dalcin } 3305618cc2edSLisandro Dalcin } 3306618cc2edSLisandro Dalcin } 33079566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33089566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33099566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33109566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33119566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3312b51a4376SLisandro Dalcin } 3313b51a4376SLisandro Dalcin 3314b51a4376SLisandro Dalcin /* store matrix values */ 3315b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3316b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33179566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES)); 3318b51a4376SLisandro Dalcin } 3319b51a4376SLisandro Dalcin 33209566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33219566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33229566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33239566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3325b51a4376SLisandro Dalcin } 3326b51a4376SLisandro Dalcin 3327d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3328d71ae5a4SJacob Faibussowitsch { 33297f489da9SVaclav Hapla PetscBool isbinary; 33304683f7a4SShri Abhyankar 33314683f7a4SShri Abhyankar PetscFunctionBegin; 33329566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33335f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33349566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33364683f7a4SShri Abhyankar } 33374683f7a4SShri Abhyankar 3338133cdb44SSatish Balay /*@ 333911a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3340133cdb44SSatish Balay 3341133cdb44SSatish Balay Input Parameters: 3342a2b725a8SWilliam Gropp + mat - the matrix 3343a2b725a8SWilliam Gropp - fact - factor 3344133cdb44SSatish Balay 334511a5261eSBarry Smith Options Database Key: 334611a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3347fee21e36SBarry Smith 33488c890885SBarry Smith Level: advanced 33498c890885SBarry Smith 335067be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3351133cdb44SSatish Balay @*/ 3352d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3353d71ae5a4SJacob Faibussowitsch { 33545bf65638SKris Buschelman PetscFunctionBegin; 3355cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33563ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33575bf65638SKris Buschelman } 33585bf65638SKris Buschelman 3359d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3360d71ae5a4SJacob Faibussowitsch { 336125fdafccSSatish Balay Mat_MPIBAIJ *baij; 3362133cdb44SSatish Balay 3363133cdb44SSatish Balay PetscFunctionBegin; 3364133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3365133cdb44SSatish Balay baij->ht_fact = fact; 33663ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3367133cdb44SSatish Balay } 3368f2a5309cSSatish Balay 3369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3370d71ae5a4SJacob Faibussowitsch { 3371f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3372ab4d48faSStefano Zampini PetscBool flg; 33735fd66863SKarl Rupp 3374f2a5309cSSatish Balay PetscFunctionBegin; 33759566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33765f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 337721e72a00SBarry Smith if (Ad) *Ad = a->A; 337821e72a00SBarry Smith if (Ao) *Ao = a->B; 337921e72a00SBarry Smith if (colmap) *colmap = a->garray; 33803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3381f2a5309cSSatish Balay } 338285535b8eSBarry Smith 338385535b8eSBarry Smith /* 338485535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 338585535b8eSBarry Smith */ 338685535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 338785535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 338885535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 338985535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 339085535b8eSBarry Smith #endif 339185535b8eSBarry Smith 339285535b8eSBarry Smith /*@C 339311a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 339485535b8eSBarry Smith 3395c3339decSBarry Smith Collective 339685535b8eSBarry Smith 339785535b8eSBarry Smith Input Parameters: 339885535b8eSBarry Smith + mat - the matrix 339985535b8eSBarry Smith . min - number of input rows 340085535b8eSBarry Smith . im - input rows 340185535b8eSBarry Smith . nin - number of input columns 340285535b8eSBarry Smith . in - input columns 340385535b8eSBarry Smith . v - numerical values input 340411a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 340585535b8eSBarry Smith 3406*20f4b53cSBarry Smith Level: advanced 3407*20f4b53cSBarry Smith 340811a5261eSBarry Smith Developer Note: 340911a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 341085535b8eSBarry Smith 341167be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 341285535b8eSBarry Smith @*/ 3413d71ae5a4SJacob Faibussowitsch PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3414d71ae5a4SJacob Faibussowitsch { 341585535b8eSBarry Smith /* convert input arguments to C version */ 341685535b8eSBarry Smith Mat mat = *matin; 341785535b8eSBarry Smith PetscInt m = *min, n = *nin; 341885535b8eSBarry Smith InsertMode addv = *addvin; 341985535b8eSBarry Smith 342085535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 342185535b8eSBarry Smith const MatScalar *value; 342285535b8eSBarry Smith MatScalar *barray = baij->barray; 3423ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 342485535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 342585535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3426d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 342785535b8eSBarry Smith 342885535b8eSBarry Smith PetscFunctionBegin; 342985535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 343026fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34315f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34325f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 343385535b8eSBarry Smith if (mat->assembled) { 343485535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 343585535b8eSBarry Smith mat->assembled = PETSC_FALSE; 343685535b8eSBarry Smith } 34379566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 343885535b8eSBarry Smith 343985535b8eSBarry Smith if (!barray) { 34409566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 344185535b8eSBarry Smith baij->barray = barray; 344285535b8eSBarry Smith } 344385535b8eSBarry Smith 344426fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 344526fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 344626fbe8dcSKarl Rupp 344785535b8eSBarry Smith for (i = 0; i < m; i++) { 344885535b8eSBarry Smith if (im[i] < 0) continue; 34496bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 345085535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 345185535b8eSBarry Smith row = im[i] - rstart; 345285535b8eSBarry Smith for (j = 0; j < n; j++) { 345385535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 345485535b8eSBarry Smith if ((roworiented) && (n == 1)) { 345585535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 345685535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 345785535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 345885535b8eSBarry Smith } else { /* Here a copy is required */ 345985535b8eSBarry Smith if (roworiented) { 346085535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 346185535b8eSBarry Smith } else { 346285535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 346385535b8eSBarry Smith } 346485535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3465ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 346685535b8eSBarry Smith } 346785535b8eSBarry Smith barray -= bs2; 346885535b8eSBarry Smith } 346985535b8eSBarry Smith 347085535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 347185535b8eSBarry Smith col = in[j] - cstart; 34729566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3473f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3474f7d195e4SLawrence Mitchell continue; 3475f7d195e4SLawrence Mitchell } else { 3476f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 347785535b8eSBarry Smith if (mat->was_assembled) { 347848a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 347985535b8eSBarry Smith 348085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 348185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34829371c9d4SSatish Balay { 34839371c9d4SSatish Balay PetscInt data; 3484eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 348508401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 348685535b8eSBarry Smith } 348785535b8eSBarry Smith #else 348808401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 348985535b8eSBarry Smith #endif 349085535b8eSBarry Smith #endif 349185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3492eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 349385535b8eSBarry Smith col = (col - 1) / bs; 349485535b8eSBarry Smith #else 349585535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 349685535b8eSBarry Smith #endif 349785535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 34989566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 349985535b8eSBarry Smith col = in[j]; 350085535b8eSBarry Smith } 350126fbe8dcSKarl Rupp } else col = in[j]; 35029566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 350385535b8eSBarry Smith } 350485535b8eSBarry Smith } 350585535b8eSBarry Smith } else { 350685535b8eSBarry Smith if (!baij->donotstash) { 350785535b8eSBarry Smith if (roworiented) { 35089566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 350985535b8eSBarry Smith } else { 35109566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 351185535b8eSBarry Smith } 351285535b8eSBarry Smith } 351385535b8eSBarry Smith } 351485535b8eSBarry Smith } 351585535b8eSBarry Smith 351685535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 351985535b8eSBarry Smith } 3520dfb205c3SBarry Smith 3521dfb205c3SBarry Smith /*@ 352211a5261eSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block 3523dfb205c3SBarry Smith CSR format the local rows. 3524dfb205c3SBarry Smith 3525d083f849SBarry Smith Collective 3526dfb205c3SBarry Smith 3527dfb205c3SBarry Smith Input Parameters: 3528dfb205c3SBarry Smith + comm - MPI communicator 3529dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 353011a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3531dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 353211a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 3533dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 353411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 353511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 3536483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3537dfb205c3SBarry Smith . j - column indices 3538dfb205c3SBarry Smith - a - matrix values 3539dfb205c3SBarry Smith 3540dfb205c3SBarry Smith Output Parameter: 3541dfb205c3SBarry Smith . mat - the matrix 3542dfb205c3SBarry Smith 3543dfb205c3SBarry Smith Level: intermediate 3544dfb205c3SBarry Smith 3545dfb205c3SBarry Smith Notes: 354667be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3547dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 354811a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3549dfb205c3SBarry Smith 35503adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35513adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35523adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35533adadaf3SJed Brown with column-major ordering within blocks. 35543adadaf3SJed Brown 355567be906fSBarry Smith The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array. 3556dfb205c3SBarry Smith 355767be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3558db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3559dfb205c3SBarry Smith @*/ 3560d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3561d71ae5a4SJacob Faibussowitsch { 3562dfb205c3SBarry Smith PetscFunctionBegin; 35635f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35645f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35659566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35669566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35679566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35689566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35699566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35709566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35719566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35729566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3574dfb205c3SBarry Smith } 3575e561ad89SHong Zhang 3576d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3577d71ae5a4SJacob Faibussowitsch { 3578bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3579bd153df0SHong Zhang PetscInt *indx; 3580bd153df0SHong Zhang PetscScalar *values; 3581e561ad89SHong Zhang 3582e561ad89SHong Zhang PetscFunctionBegin; 35839566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3584bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3585bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 35862c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3587bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 358877f764caSHong Zhang PetscMPIInt rank, size; 3589e561ad89SHong Zhang 35909566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 35919371c9d4SSatish Balay mbs = m / bs; 35929371c9d4SSatish Balay Nbs = N / cbs; 359348a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3594da91a574SPierre Jolivet nbs = n / cbs; 3595e561ad89SHong Zhang 35969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3597d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 359877f764caSHong Zhang 35999566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 360177f764caSHong Zhang if (rank == size - 1) { 360277f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36035f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 360477f764caSHong Zhang } 360577f764caSHong Zhang 3606d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3607bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36089566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3609647a6520SHong Zhang nnz = nnz / bs; 3610647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36119566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36129566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3613e561ad89SHong Zhang } 36149566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3615e561ad89SHong Zhang 36169566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36179566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36189566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36199566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36209566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36219566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3622d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36239566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3624e561ad89SHong Zhang } 3625e561ad89SHong Zhang 3626bd153df0SHong Zhang /* numeric phase */ 36279566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36289566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3629e561ad89SHong Zhang 3630e561ad89SHong Zhang for (i = 0; i < m; i++) { 36319566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3632e561ad89SHong Zhang Ii = i + rstart; 36339566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36349566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3635e561ad89SHong Zhang } 36369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3639e561ad89SHong Zhang } 3640