1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 26290f02eecSBarry Smith if (!baij->donotstash) { 263ff2fd236SBarry Smith if (roworiented) { 264b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 265ff2fd236SBarry Smith } else { 266b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27090f02eecSBarry Smith } 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 27257b952d6SSatish Balay } 27357b952d6SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 277ab26458aSBarry Smith { 278ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 279dd6ea824SBarry Smith const PetscScalar *value; 280f15d580aSBarry Smith MatScalar *barray=baij->barray; 281273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 282dfbe8321SBarry Smith PetscErrorCode ierr; 283899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 284899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 285d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 286ab26458aSBarry Smith 287b16ae2b1SBarry Smith PetscFunctionBegin; 28830793edcSSatish Balay if(!barray) { 28982502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29082502324SSatish Balay baij->barray = barray; 29130793edcSSatish Balay } 29230793edcSSatish Balay 293ab26458aSBarry Smith if (roworiented) { 294ab26458aSBarry Smith stepval = (n-1)*bs; 295ab26458aSBarry Smith } else { 296ab26458aSBarry Smith stepval = (m-1)*bs; 297ab26458aSBarry Smith } 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 313ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 314ab26458aSBarry Smith } else { 315ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 316abef11f7SSatish Balay } 31747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31847513183SBarry Smith for (jj=0; jj<bs; jj++) { 31930793edcSSatish Balay *barray++ = *value++; 32047513183SBarry Smith } 32147513183SBarry Smith } 32230793edcSSatish Balay barray -=bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 328ab26458aSBarry Smith } 3295ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 332ab26458aSBarry Smith #endif 333ab26458aSBarry Smith else { 334ab26458aSBarry Smith if (mat->was_assembled) { 335ab26458aSBarry Smith if (!baij->colmap) { 336ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 337ab26458aSBarry Smith } 338a5eb4965SSatish Balay 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 341b24ad042SBarry Smith { PetscInt data; 3420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34329bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 344fa46199cSSatish Balay } 34548e59246SSatish Balay #else 34629bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 347a5eb4965SSatish Balay #endif 34848e59246SSatish Balay #endif 349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3500f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 351fa46199cSSatish Balay col = (col - 1)/bs; 35248e59246SSatish Balay #else 353a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35448e59246SSatish Balay #endif 355ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 356ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357ab26458aSBarry Smith col = in[j]; 358ab26458aSBarry Smith } 359ab26458aSBarry Smith } 360ab26458aSBarry Smith else col = in[j]; 36197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 364d64ed03dSBarry Smith } else { 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 42477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 43477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 446b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 448b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48777431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 50977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 51977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 58897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 59397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 6567adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 657064f8208SBarry Smith *nrm = sqrt(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 662d0f46423SBarry Smith tmp2 = tmp + mat->cmap->N; 663d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6648a62d963SHong Zhang v = amat->a; jj = amat->j; 6658a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6668a62d963SHong Zhang for (j=0; j<bs; j++){ 6678a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6688a62d963SHong Zhang for (row=0; row<bs; row++){ 6698a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6708a62d963SHong Zhang } 6718a62d963SHong Zhang } 6728a62d963SHong Zhang jj++; 6738a62d963SHong Zhang } 6748a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6758a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6768a62d963SHong Zhang for (j=0; j<bs; j++){ 6778a62d963SHong Zhang col = bs*garray[*jj] + j; 6788a62d963SHong Zhang for (row=0; row<bs; row++){ 6798a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6808a62d963SHong Zhang } 6818a62d963SHong Zhang } 6828a62d963SHong Zhang jj++; 6838a62d963SHong Zhang } 684d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6858a62d963SHong Zhang *nrm = 0.0; 686d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6878a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6888a62d963SHong Zhang } 6898a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6908a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 691577dd1f9SKris Buschelman PetscReal *sums; 692577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6938a62d963SHong Zhang sum = 0.0; 6948a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6958a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6968a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6978a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6988a62d963SHong Zhang for (i=0; i<nz; i++) { 6998a62d963SHong Zhang for (col=0; col<bs; col++){ 7008a62d963SHong Zhang for (row=0; row<bs; row++){ 7018a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7068a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7078a62d963SHong Zhang for (i=0; i<nz; i++) { 7088a62d963SHong Zhang for (col=0; col<bs; col++){ 7098a62d963SHong Zhang for (row=0; row<bs; row++){ 7108a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang for (row=0; row<bs; row++){ 7158a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7187adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 719577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 720d64ed03dSBarry Smith } else { 72129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 722d6de1c52SSatish Balay } 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7540bdbc534SSatish Balay size = baij->ht_size; 755fef45726SSatish Balay 7560bdbc534SSatish Balay if (baij->ht) { 7570bdbc534SSatish Balay PetscFunctionReturn(0); 758596b8d2eSBarry Smith } 7590bdbc534SSatish Balay 760fef45726SSatish Balay /* Allocate Memory for Hash Table */ 761b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 762b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 763b9e4cc15SSatish Balay HD = baij->hd; 764a07cd24cSSatish Balay HT = baij->ht; 765b9e4cc15SSatish Balay 766b9e4cc15SSatish Balay 767b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7680bdbc534SSatish Balay 769596b8d2eSBarry Smith 770596b8d2eSBarry Smith /* Loop Over A */ 7710bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 772596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7730bdbc534SSatish Balay row = i+rstart; 7740bdbc534SSatish Balay col = aj[j]+cstart; 775596b8d2eSBarry Smith 776187ce0cbSSatish Balay key = row*Nbs + col + 1; 777c2760754SSatish Balay h1 = HASH(size,key,tmp); 7780bdbc534SSatish Balay for (k=0; k<size; k++){ 779958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7800bdbc534SSatish Balay HT[(h1+k)%size] = key; 7810bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 782596b8d2eSBarry Smith break; 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay } else { 785187ce0cbSSatish Balay ct++; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788187ce0cbSSatish Balay } 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay if (k> max) max = k; 791187ce0cbSSatish Balay #endif 792596b8d2eSBarry Smith } 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith /* Loop Over B */ 7950bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 796596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7970bdbc534SSatish Balay row = i+rstart; 7980bdbc534SSatish Balay col = garray[bj[j]]; 799187ce0cbSSatish Balay key = row*Nbs + col + 1; 800c2760754SSatish Balay h1 = HASH(size,key,tmp); 8010bdbc534SSatish Balay for (k=0; k<size; k++){ 802958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8030bdbc534SSatish Balay HT[(h1+k)%size] = key; 8040bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 805596b8d2eSBarry Smith break; 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807187ce0cbSSatish Balay } else { 808187ce0cbSSatish Balay ct++; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811187ce0cbSSatish Balay } 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay if (k> max) max = k; 814187ce0cbSSatish Balay #endif 815596b8d2eSBarry Smith } 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith 818596b8d2eSBarry Smith /* Print Summary */ 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 821596b8d2eSBarry Smith if (HT[i]) {j++;} 822c38d4ed2SBarry Smith } 8231e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 824187ce0cbSSatish Balay #endif 8253a40ed3dSBarry Smith PetscFunctionReturn(0); 826596b8d2eSBarry Smith } 82757b952d6SSatish Balay 8284a2ae208SSatish Balay #undef __FUNCT__ 8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 831bbb85fb3SSatish Balay { 832bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834b24ad042SBarry Smith PetscInt nstash,reallocs; 835bbb85fb3SSatish Balay InsertMode addv; 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay PetscFunctionBegin; 838bbb85fb3SSatish Balay if (baij->donotstash) { 839bbb85fb3SSatish Balay PetscFunctionReturn(0); 840bbb85fb3SSatish Balay } 841bbb85fb3SSatish Balay 842bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8437adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 844bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 848bbb85fb3SSatish Balay 849d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8541e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 855bbb85fb3SSatish Balay PetscFunctionReturn(0); 856bbb85fb3SSatish Balay } 857bbb85fb3SSatish Balay 8584a2ae208SSatish Balay #undef __FUNCT__ 8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 861bbb85fb3SSatish Balay { 862bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8646849ba73SBarry Smith PetscErrorCode ierr; 865b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 866e44c0bd4SBarry Smith PetscInt *row,*col; 867e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8683eda8832SBarry Smith MatScalar *val; 869bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 870b24ad042SBarry Smith PetscMPIInt n; 871bbb85fb3SSatish Balay 87291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 873bbb85fb3SSatish Balay PetscFunctionBegin; 874bbb85fb3SSatish Balay if (!baij->donotstash) { 875a2d1c673SSatish Balay while (1) { 8768798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 877a2d1c673SSatish Balay if (!flg) break; 878a2d1c673SSatish Balay 879bbb85fb3SSatish Balay for (i=0; i<n;) { 880bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 881bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 882bbb85fb3SSatish Balay if (j < n) ncols = j-i; 883bbb85fb3SSatish Balay else ncols = n-i; 884bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 886bbb85fb3SSatish Balay i = j; 887bbb85fb3SSatish Balay } 888bbb85fb3SSatish Balay } 8898798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 890a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 891a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 892a2d1c673SSatish Balay restore the original flags */ 893a2d1c673SSatish Balay r1 = baij->roworiented; 894a2d1c673SSatish Balay r2 = a->roworiented; 89591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8967c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8977c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 899a2d1c673SSatish Balay while (1) { 9008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 901a2d1c673SSatish Balay if (!flg) break; 902a2d1c673SSatish Balay 903a2d1c673SSatish Balay for (i=0; i<n;) { 904a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 905a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 906a2d1c673SSatish Balay if (j < n) ncols = j-i; 907a2d1c673SSatish Balay else ncols = n-i; 90897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 909a2d1c673SSatish Balay i = j; 910a2d1c673SSatish Balay } 911a2d1c673SSatish Balay } 9128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 913a2d1c673SSatish Balay baij->roworiented = r1; 914a2d1c673SSatish Balay a->roworiented = r2; 91591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 916bbb85fb3SSatish Balay } 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 919bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 922bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 923bbb85fb3SSatish Balay /* 924bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 925bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 926bbb85fb3SSatish Balay */ 927bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9287adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 929bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 930bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 931bbb85fb3SSatish Balay } 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay 934bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 935bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 936bbb85fb3SSatish Balay } 93791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 938bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 939bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay 9416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 942bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9431e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 944bbb85fb3SSatish Balay baij->ht_total_ct = 0; 945bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 946bbb85fb3SSatish Balay } 947bbb85fb3SSatish Balay #endif 948bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 949bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 950bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 951bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 955606d414cSSatish Balay baij->rowvalues = 0; 956bbb85fb3SSatish Balay PetscFunctionReturn(0); 957bbb85fb3SSatish Balay } 95857b952d6SSatish Balay 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96257b952d6SSatish Balay { 96357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 964dfbe8321SBarry Smith PetscErrorCode ierr; 965b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 966d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96732077d6dSBarry Smith PetscTruth iascii,isdraw; 968b0a32e0cSBarry Smith PetscViewer sviewer; 969f3ef73ceSBarry Smith PetscViewerFormat format; 97057b952d6SSatish Balay 971d64ed03dSBarry Smith PetscFunctionBegin; 97232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 973fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97432077d6dSBarry Smith if (iascii) { 975b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 976456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9774e220ebcSLois Curfman McInnes MatInfo info; 9787adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 979d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 981d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 982d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 983d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 985d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 987b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9903a40ed3dSBarry Smith PetscFunctionReturn(0); 991fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9933a40ed3dSBarry Smith PetscFunctionReturn(0); 99404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99504929863SHong Zhang PetscFunctionReturn(0); 99657b952d6SSatish Balay } 99757b952d6SSatish Balay } 99857b952d6SSatish Balay 9990f5bd95cSBarry Smith if (isdraw) { 1000b0a32e0cSBarry Smith PetscDraw draw; 100157b952d6SSatish Balay PetscTruth isnull; 1002b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1003b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100457b952d6SSatish Balay } 100557b952d6SSatish Balay 100657b952d6SSatish Balay if (size == 1) { 10077adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100857b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1009d64ed03dSBarry Smith } else { 101057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101157b952d6SSatish Balay Mat A; 101257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1013d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10143eda8832SBarry Smith MatScalar *a; 101557b952d6SSatish Balay 1016f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1017f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10187adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101957b952d6SSatish Balay if (!rank) { 1020f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1021d64ed03dSBarry Smith } else { 1022f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102357b952d6SSatish Balay } 1024f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1025d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay /* copy over the A part */ 102957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1031b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103257b952d6SSatish Balay 103357b952d6SSatish Balay for (i=0; i<mbs; i++) { 1034899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1037899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103857b952d6SSatish Balay for (k=0; k<bs; k++) { 103997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1040cee3aa6bSSatish Balay col++; a += bs; 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay /* copy over the B part */ 104557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1048899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++) { 105397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 1058606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10596d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106155843e3eSBarry Smith /* 106255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1063b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106455843e3eSBarry Smith */ 1065b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1066f14a1c24SBarry Smith if (!rank) { 10677adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10686831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106957b952d6SSatish Balay } 1070b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107257b952d6SSatish Balay } 10733a40ed3dSBarry Smith PetscFunctionReturn(0); 107457b952d6SSatish Balay } 107557b952d6SSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107957b952d6SSatish Balay { 1080dfbe8321SBarry Smith PetscErrorCode ierr; 108132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108257b952d6SSatish Balay 1083d64ed03dSBarry Smith PetscFunctionBegin; 108432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1085fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1086b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1087fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10897b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10905cd90555SBarry Smith } else { 109179a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109257b952d6SSatish Balay } 10933a40ed3dSBarry Smith PetscFunctionReturn(0); 109457b952d6SSatish Balay } 109557b952d6SSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109979bdfe76SSatish Balay { 110079bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 110279bdfe76SSatish Balay 1103d64ed03dSBarry Smith PetscFunctionBegin; 1104aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1105d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110679bdfe76SSatish Balay #endif 11078798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11129c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111348e59246SSatish Balay #else 111405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111548e59246SSatish Balay #endif 111605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1117606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1118606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 111905b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1122899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1123606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1124901853e0SKris Buschelman 1125dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1130aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1131901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11333a40ed3dSBarry Smith PetscFunctionReturn(0); 113479bdfe76SSatish Balay } 113579bdfe76SSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1139cee3aa6bSSatish Balay { 1140cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1141dfbe8321SBarry Smith PetscErrorCode ierr; 1142b24ad042SBarry Smith PetscInt nt; 1143cee3aa6bSSatish Balay 1144d64ed03dSBarry Smith PetscFunctionBegin; 1145e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1146d0f46423SBarry Smith if (nt != A->cmap->n) { 114729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114847b4a8eaSLois Curfman McInnes } 1149e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1150d0f46423SBarry Smith if (nt != A->rmap->n) { 115129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115247b4a8eaSLois Curfman McInnes } 1153ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1154f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1155ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1156f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11573a40ed3dSBarry Smith PetscFunctionReturn(0); 1158cee3aa6bSSatish Balay } 1159cee3aa6bSSatish Balay 11604a2ae208SSatish Balay #undef __FUNCT__ 11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1163cee3aa6bSSatish Balay { 1164cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1165dfbe8321SBarry Smith PetscErrorCode ierr; 1166d64ed03dSBarry Smith 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1169f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1170ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1171f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11723a40ed3dSBarry Smith PetscFunctionReturn(0); 1173cee3aa6bSSatish Balay } 1174cee3aa6bSSatish Balay 11754a2ae208SSatish Balay #undef __FUNCT__ 11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1178cee3aa6bSSatish Balay { 1179cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1180dfbe8321SBarry Smith PetscErrorCode ierr; 1181a5ff213dSBarry Smith PetscTruth merged; 1182cee3aa6bSSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do nondiagonal part */ 11867c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1187a5ff213dSBarry Smith if (!merged) { 1188cee3aa6bSSatish Balay /* send it on its way */ 1189ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* do local part */ 11917c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1192cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1193a5ff213dSBarry Smith /* inserted in yy until the next line */ 1194ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith } else { 1196a5ff213dSBarry Smith /* do local part */ 1197a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1198a5ff213dSBarry Smith /* send it on its way */ 1199ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1200a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1201ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1202a5ff213dSBarry Smith } 12033a40ed3dSBarry Smith PetscFunctionReturn(0); 1204cee3aa6bSSatish Balay } 1205cee3aa6bSSatish Balay 12064a2ae208SSatish Balay #undef __FUNCT__ 12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1209cee3aa6bSSatish Balay { 1210cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1211dfbe8321SBarry Smith PetscErrorCode ierr; 1212cee3aa6bSSatish Balay 1213d64ed03dSBarry Smith PetscFunctionBegin; 1214cee3aa6bSSatish Balay /* do nondiagonal part */ 12157c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1216cee3aa6bSSatish Balay /* send it on its way */ 1217ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218cee3aa6bSSatish Balay /* do local part */ 12197c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1220cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1221cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1222cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1223ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226cee3aa6bSSatish Balay 1227cee3aa6bSSatish Balay /* 1228cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1229cee3aa6bSSatish Balay diagonal block 1230cee3aa6bSSatish Balay */ 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1234cee3aa6bSSatish Balay { 1235cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237d64ed03dSBarry Smith 1238d64ed03dSBarry Smith PetscFunctionBegin; 1239d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12403a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12413a40ed3dSBarry Smith PetscFunctionReturn(0); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 12444a2ae208SSatish Balay #undef __FUNCT__ 12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1247cee3aa6bSSatish Balay { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1253f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256026e39d0SSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1260acdf5bf4SSatish Balay { 1261acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12636849ba73SBarry Smith PetscErrorCode ierr; 1264d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1265d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1266899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1267acdf5bf4SSatish Balay 1268d64ed03dSBarry Smith PetscFunctionBegin; 1269abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1270acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1271acdf5bf4SSatish Balay 1272acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1273acdf5bf4SSatish Balay /* 1274acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1275acdf5bf4SSatish Balay */ 1276acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1277b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1278bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1279acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1280acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1281acdf5bf4SSatish Balay } 1282b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1283b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1284acdf5bf4SSatish Balay } 1285acdf5bf4SSatish Balay 128629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1287d9d09a02SSatish Balay lrow = row - brstart; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1290acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1291acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1292f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1293f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1294acdf5bf4SSatish Balay nztot = nzA + nzB; 1295acdf5bf4SSatish Balay 1296acdf5bf4SSatish Balay cmap = mat->garray; 1297acdf5bf4SSatish Balay if (v || idx) { 1298acdf5bf4SSatish Balay if (nztot) { 1299acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1300b24ad042SBarry Smith PetscInt imark = -1; 1301acdf5bf4SSatish Balay if (v) { 1302acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1303acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1304d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1305acdf5bf4SSatish Balay else break; 1306acdf5bf4SSatish Balay } 1307acdf5bf4SSatish Balay imark = i; 1308acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1309acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1310acdf5bf4SSatish Balay } 1311acdf5bf4SSatish Balay if (idx) { 1312acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1313acdf5bf4SSatish Balay if (imark > -1) { 1314acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1315bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay } else { 1318acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1319d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1320d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1321acdf5bf4SSatish Balay else break; 1322acdf5bf4SSatish Balay } 1323acdf5bf4SSatish Balay imark = i; 1324acdf5bf4SSatish Balay } 1325d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1326d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1327acdf5bf4SSatish Balay } 1328d64ed03dSBarry Smith } else { 1329d212a18eSSatish Balay if (idx) *idx = 0; 1330d212a18eSSatish Balay if (v) *v = 0; 1331d212a18eSSatish Balay } 1332acdf5bf4SSatish Balay } 1333acdf5bf4SSatish Balay *nz = nztot; 1334f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1335f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1342acdf5bf4SSatish Balay { 1343acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1344d64ed03dSBarry Smith 1345d64ed03dSBarry Smith PetscFunctionBegin; 1346abc0a331SBarry Smith if (!baij->getrowactive) { 134729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1348acdf5bf4SSatish Balay } 1349acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13503a40ed3dSBarry Smith PetscFunctionReturn(0); 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay 13534a2ae208SSatish Balay #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135658667388SSatish Balay { 135758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359d64ed03dSBarry Smith 1360d64ed03dSBarry Smith PetscFunctionBegin; 136158667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136258667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 136458667388SSatish Balay } 13650ac07820SSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13690ac07820SSatish Balay { 13704e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13714e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1372dfbe8321SBarry Smith PetscErrorCode ierr; 1373329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13740ac07820SSatish Balay 1375d64ed03dSBarry Smith PetscFunctionBegin; 1376d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13774e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13780e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1379de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13804e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13810e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1382de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13830ac07820SSatish Balay if (flag == MAT_LOCAL) { 13844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13874e220ebcSLois Curfman McInnes info->memory = isend[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13960ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13977adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1403d41123aaSBarry Smith } else { 140477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14050ac07820SSatish Balay } 14064e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14074e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14084e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14093a40ed3dSBarry Smith PetscFunctionReturn(0); 14100ac07820SSatish Balay } 14110ac07820SSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 141558667388SSatish Balay { 141658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1417dfbe8321SBarry Smith PetscErrorCode ierr; 141858667388SSatish Balay 1419d64ed03dSBarry Smith PetscFunctionBegin; 142012c028f9SKris Buschelman switch (op) { 1421512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1424a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 142512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14274e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142812c028f9SKris Buschelman break; 142912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14304e0d8c25SBarry Smith a->roworiented = flg; 14314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14324e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143312c028f9SKris Buschelman break; 14344e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1435290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 143612c028f9SKris Buschelman break; 143712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14384e0d8c25SBarry Smith a->donotstash = flg; 143912c028f9SKris Buschelman break; 144012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14414e0d8c25SBarry Smith a->ht_flag = flg; 144212c028f9SKris Buschelman break; 144377e54ba9SKris Buschelman case MAT_SYMMETRIC: 144477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14452188ac68SBarry Smith case MAT_HERMITIAN: 14462188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14474e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144877e54ba9SKris Buschelman break; 144912c028f9SKris Buschelman default: 1450ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1451d64ed03dSBarry Smith } 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 145358667388SSatish Balay } 145458667388SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14580ac07820SSatish Balay { 14590ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14600ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14610ac07820SSatish Balay Mat B; 1462dfbe8321SBarry Smith PetscErrorCode ierr; 1463d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1464d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14653eda8832SBarry Smith MatScalar *a; 14660ac07820SSatish Balay 1467d64ed03dSBarry Smith PetscFunctionBegin; 1468e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1469fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14707adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1471d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14727adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1473d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1474fc4dec0aSBarry Smith } else { 1475fc4dec0aSBarry Smith B = *matout; 1476fc4dec0aSBarry Smith } 14770ac07820SSatish Balay 14780ac07820SSatish Balay /* copy over the A part */ 14790ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14800ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1481b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14820ac07820SSatish Balay 14830ac07820SSatish Balay for (i=0; i<mbs; i++) { 1484899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14850ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14860ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1487899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14880ac07820SSatish Balay for (k=0; k<bs; k++) { 148997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14900ac07820SSatish Balay col++; a += bs; 14910ac07820SSatish Balay } 14920ac07820SSatish Balay } 14930ac07820SSatish Balay } 14940ac07820SSatish Balay /* copy over the B part */ 14950ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14960ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14970ac07820SSatish Balay for (i=0; i<mbs; i++) { 1498899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14990ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15000ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15010ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15020ac07820SSatish Balay for (k=0; k<bs; k++) { 150397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15040ac07820SSatish Balay col++; a += bs; 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 1508606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15090ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15100ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15110ac07820SSatish Balay 1512815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15130ac07820SSatish Balay *matout = B; 15140ac07820SSatish Balay } else { 1515273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15160ac07820SSatish Balay } 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15180ac07820SSatish Balay } 15190e95ebc0SSatish Balay 15204a2ae208SSatish Balay #undef __FUNCT__ 15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15230e95ebc0SSatish Balay { 152436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1526dfbe8321SBarry Smith PetscErrorCode ierr; 1527b24ad042SBarry Smith PetscInt s1,s2,s3; 15280e95ebc0SSatish Balay 1529d64ed03dSBarry Smith PetscFunctionBegin; 153036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153136c4a09eSSatish Balay if (rr) { 153236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153436c4a09eSSatish Balay /* Overlap communication with computation. */ 1535ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 153636c4a09eSSatish Balay } 15370e95ebc0SSatish Balay if (ll) { 15380e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1540a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15410e95ebc0SSatish Balay } 154236c4a09eSSatish Balay /* scale the diagonal block */ 154336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154436c4a09eSSatish Balay 154536c4a09eSSatish Balay if (rr) { 154636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1547ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1548a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154936c4a09eSSatish Balay } 155036c4a09eSSatish Balay 15513a40ed3dSBarry Smith PetscFunctionReturn(0); 15520e95ebc0SSatish Balay } 15530e95ebc0SSatish Balay 15544a2ae208SSatish Balay #undef __FUNCT__ 15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15570ac07820SSatish Balay { 15580ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15596849ba73SBarry Smith PetscErrorCode ierr; 1560b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1561d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1562b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1563b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15647adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1565d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15667adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15670ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15680ac07820SSatish Balay MPI_Status recv_status,*send_status; 15696543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15706543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15716543fbbaSBarry Smith #endif 15720ac07820SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 15740ac07820SSatish Balay /* first count number of contributors to each processor */ 1575b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1576b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1577b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15786543fbbaSBarry Smith j = 0; 15790ac07820SSatish Balay for (i=0; i<N; i++) { 15806543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15816543fbbaSBarry Smith lastidx = idx; 15826543fbbaSBarry Smith for (; j<size; j++) { 1583357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15846543fbbaSBarry Smith nprocs[2*j]++; 15856543fbbaSBarry Smith nprocs[2*j+1] = 1; 15866543fbbaSBarry Smith owner[i] = j; 15876543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15886543fbbaSBarry Smith found = PETSC_TRUE; 15896543fbbaSBarry Smith #endif 15906543fbbaSBarry Smith break; 15910ac07820SSatish Balay } 15920ac07820SSatish Balay } 15936543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15956543fbbaSBarry Smith found = PETSC_FALSE; 15966543fbbaSBarry Smith #endif 15970ac07820SSatish Balay } 1598c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15990ac07820SSatish Balay 16000ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1601c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* post receives: */ 1604b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1605b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16060ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1607b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16080ac07820SSatish Balay } 16090ac07820SSatish Balay 16100ac07820SSatish Balay /* do sends: 16110ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16120ac07820SSatish Balay the ith processor 16130ac07820SSatish Balay */ 1614b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1615b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1616b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16170ac07820SSatish Balay starts[0] = 0; 1618c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16190ac07820SSatish Balay for (i=0; i<N; i++) { 16200ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16210ac07820SSatish Balay } 16220ac07820SSatish Balay 16230ac07820SSatish Balay starts[0] = 0; 1624c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16250ac07820SSatish Balay count = 0; 16260ac07820SSatish Balay for (i=0; i<size; i++) { 1627c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1628b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16290ac07820SSatish Balay } 16300ac07820SSatish Balay } 1631606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16320ac07820SSatish Balay 1633357c27ecSBarry Smith base = owners[rank]; 16340ac07820SSatish Balay 16350ac07820SSatish Balay /* wait on receives */ 1636b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16370ac07820SSatish Balay source = lens + nrecvs; 16380ac07820SSatish Balay count = nrecvs; slen = 0; 16390ac07820SSatish Balay while (count) { 1640ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16410ac07820SSatish Balay /* unpack receives into our local space */ 1642b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16430ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16440ac07820SSatish Balay lens[imdex] = n; 16450ac07820SSatish Balay slen += n; 16460ac07820SSatish Balay count--; 16470ac07820SSatish Balay } 1648606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16490ac07820SSatish Balay 16500ac07820SSatish Balay /* move the data into the send scatter */ 1651b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16520ac07820SSatish Balay count = 0; 16530ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16540ac07820SSatish Balay values = rvalues + i*nmax; 16550ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16560ac07820SSatish Balay lrows[count++] = values[j] - base; 16570ac07820SSatish Balay } 16580ac07820SSatish Balay } 1659606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1660606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1661606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1662606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16630ac07820SSatish Balay 16640ac07820SSatish Balay /* actually zap the local rows */ 166572dacd9aSBarry Smith /* 166672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1667a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167072dacd9aSBarry Smith 167172dacd9aSBarry Smith */ 16729c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1673f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1674d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1675f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1676f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1677f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1678fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 167929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1680512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16816525c446SSatish Balay } 1682a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1683a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1684f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1685a07cd24cSSatish Balay } 1686a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1687a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16889c957beeSSatish Balay } else { 1689f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1690a07cd24cSSatish Balay } 16919c957beeSSatish Balay 1692606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1693a07cd24cSSatish Balay 16940ac07820SSatish Balay /* wait on sends */ 16950ac07820SSatish Balay if (nsends) { 169682502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1697ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1698606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16990ac07820SSatish Balay } 1700606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1701606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17020ac07820SSatish Balay 17033a40ed3dSBarry Smith PetscFunctionReturn(0); 17040ac07820SSatish Balay } 170572dacd9aSBarry Smith 17064a2ae208SSatish Balay #undef __FUNCT__ 17074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1708dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1709bb5a7306SBarry Smith { 1710bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1711dfbe8321SBarry Smith PetscErrorCode ierr; 1712d64ed03dSBarry Smith 1713d64ed03dSBarry Smith PetscFunctionBegin; 1714bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17153a40ed3dSBarry Smith PetscFunctionReturn(0); 1716bb5a7306SBarry Smith } 1717bb5a7306SBarry Smith 17186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17190ac07820SSatish Balay 17204a2ae208SSatish Balay #undef __FUNCT__ 17214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1722dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17237fc3c18eSBarry Smith { 17247fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17257fc3c18eSBarry Smith Mat a,b,c,d; 17267fc3c18eSBarry Smith PetscTruth flg; 1727dfbe8321SBarry Smith PetscErrorCode ierr; 17287fc3c18eSBarry Smith 17297fc3c18eSBarry Smith PetscFunctionBegin; 17307fc3c18eSBarry Smith a = matA->A; b = matA->B; 17317fc3c18eSBarry Smith c = matB->A; d = matB->B; 17327fc3c18eSBarry Smith 17337fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1734abc0a331SBarry Smith if (flg) { 17357fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17367fc3c18eSBarry Smith } 17377adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17387fc3c18eSBarry Smith PetscFunctionReturn(0); 17397fc3c18eSBarry Smith } 17407fc3c18eSBarry Smith 17413c896bc6SHong Zhang #undef __FUNCT__ 17423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17433c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17443c896bc6SHong Zhang { 17453c896bc6SHong Zhang PetscErrorCode ierr; 17463c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17473c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17483c896bc6SHong Zhang 17493c896bc6SHong Zhang PetscFunctionBegin; 17503c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17513c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17523c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17533c896bc6SHong Zhang } else { 17543c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17553c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17563c896bc6SHong Zhang } 17573c896bc6SHong Zhang PetscFunctionReturn(0); 17583c896bc6SHong Zhang } 1759273d9f13SBarry Smith 17604a2ae208SSatish Balay #undef __FUNCT__ 17614a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1762dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1763273d9f13SBarry Smith { 1764dfbe8321SBarry Smith PetscErrorCode ierr; 1765273d9f13SBarry Smith 1766273d9f13SBarry Smith PetscFunctionBegin; 1767db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1768273d9f13SBarry Smith PetscFunctionReturn(0); 1769273d9f13SBarry Smith } 1770273d9f13SBarry Smith 17714fe895cdSHong Zhang #include "petscblaslapack.h" 17724fe895cdSHong Zhang #undef __FUNCT__ 17734fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17754fe895cdSHong Zhang { 17764fe895cdSHong Zhang PetscErrorCode ierr; 17774fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17784fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17794fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17804fe895cdSHong Zhang 17814fe895cdSHong Zhang PetscFunctionBegin; 17824fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17834fe895cdSHong Zhang PetscScalar alpha = a; 17844fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17854fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17860805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17874fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17884fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17894fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17900805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17914fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17924fe895cdSHong Zhang } else { 17934fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17944fe895cdSHong Zhang } 17954fe895cdSHong Zhang PetscFunctionReturn(0); 17964fe895cdSHong Zhang } 17974fe895cdSHong Zhang 179899cafbc1SBarry Smith #undef __FUNCT__ 179999cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 180099cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 180199cafbc1SBarry Smith { 180299cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 180399cafbc1SBarry Smith PetscErrorCode ierr; 180499cafbc1SBarry Smith 180599cafbc1SBarry Smith PetscFunctionBegin; 180699cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 180799cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 180899cafbc1SBarry Smith PetscFunctionReturn(0); 180999cafbc1SBarry Smith } 181099cafbc1SBarry Smith 181199cafbc1SBarry Smith #undef __FUNCT__ 181299cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 181399cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 181499cafbc1SBarry Smith { 181599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181699cafbc1SBarry Smith PetscErrorCode ierr; 181799cafbc1SBarry Smith 181899cafbc1SBarry Smith PetscFunctionBegin; 181999cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 182099cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 182199cafbc1SBarry Smith PetscFunctionReturn(0); 182299cafbc1SBarry Smith } 182399cafbc1SBarry Smith 182482094794SBarry Smith #undef __FUNCT__ 182582094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18264aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18274aa3045dSJed Brown { 18284aa3045dSJed Brown PetscErrorCode ierr; 18294aa3045dSJed Brown IS iscol_local; 18304aa3045dSJed Brown PetscInt csize; 18314aa3045dSJed Brown 18324aa3045dSJed Brown PetscFunctionBegin; 18334aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1834b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1835b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1836b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1837b79d0421SJed Brown } else { 18384aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1839b79d0421SJed Brown } 18404aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1841b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1842b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18434aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1844b79d0421SJed Brown } 18454aa3045dSJed Brown PetscFunctionReturn(0); 18464aa3045dSJed Brown } 18474aa3045dSJed Brown 18484aa3045dSJed Brown #undef __FUNCT__ 18494aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 185082094794SBarry Smith /* 185182094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 185282094794SBarry Smith in local and then by concatenating the local matrices the end result. 185382094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 185482094794SBarry Smith */ 18554aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 185682094794SBarry Smith { 185782094794SBarry Smith PetscErrorCode ierr; 185882094794SBarry Smith PetscMPIInt rank,size; 185982094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 186082094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 186182094794SBarry Smith Mat *local,M,Mreuse; 186282094794SBarry Smith MatScalar *vwork,*aa; 186382094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 186482094794SBarry Smith Mat_SeqBAIJ *aij; 186582094794SBarry Smith 186682094794SBarry Smith 186782094794SBarry Smith PetscFunctionBegin; 186882094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 186982094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 187082094794SBarry Smith 187182094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 187282094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 187382094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 187482094794SBarry Smith local = &Mreuse; 187582094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 187682094794SBarry Smith } else { 187782094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 187882094794SBarry Smith Mreuse = *local; 187982094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 188082094794SBarry Smith } 188182094794SBarry Smith 188282094794SBarry Smith /* 188382094794SBarry Smith m - number of local rows 188482094794SBarry Smith n - number of columns (same on all processors) 188582094794SBarry Smith rstart - first row in new global matrix generated 188682094794SBarry Smith */ 188782094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 188882094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 188982094794SBarry Smith m = m/bs; 189082094794SBarry Smith n = n/bs; 189182094794SBarry Smith 189282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 189382094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 189482094794SBarry Smith ii = aij->i; 189582094794SBarry Smith jj = aij->j; 189682094794SBarry Smith 189782094794SBarry Smith /* 189882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 189982094794SBarry Smith portions of the matrix in order to do correct preallocation 190082094794SBarry Smith */ 190182094794SBarry Smith 190282094794SBarry Smith /* first get start and end of "diagonal" columns */ 190382094794SBarry Smith if (csize == PETSC_DECIDE) { 190482094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 190582094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 190682094794SBarry Smith nlocal = m; 190782094794SBarry Smith } else { 190882094794SBarry Smith nlocal = n/size + ((n % size) > rank); 190982094794SBarry Smith } 191082094794SBarry Smith } else { 191182094794SBarry Smith nlocal = csize/bs; 191282094794SBarry Smith } 191382094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 191482094794SBarry Smith rstart = rend - nlocal; 191582094794SBarry Smith if (rank == size - 1 && rend != n) { 191682094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 191782094794SBarry Smith } 191882094794SBarry Smith 191982094794SBarry Smith /* next, compute all the lengths */ 192082094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 192182094794SBarry Smith olens = dlens + m; 192282094794SBarry Smith for (i=0; i<m; i++) { 192382094794SBarry Smith jend = ii[i+1] - ii[i]; 192482094794SBarry Smith olen = 0; 192582094794SBarry Smith dlen = 0; 192682094794SBarry Smith for (j=0; j<jend; j++) { 192782094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 192882094794SBarry Smith else dlen++; 192982094794SBarry Smith jj++; 193082094794SBarry Smith } 193182094794SBarry Smith olens[i] = olen; 193282094794SBarry Smith dlens[i] = dlen; 193382094794SBarry Smith } 193482094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 193582094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 193682094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 193782094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 193882094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 193982094794SBarry Smith } else { 194082094794SBarry Smith PetscInt ml,nl; 194182094794SBarry Smith 194282094794SBarry Smith M = *newmat; 194382094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 194482094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 194582094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 194682094794SBarry Smith /* 194782094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 194882094794SBarry Smith rather than the slower MatSetValues(). 194982094794SBarry Smith */ 195082094794SBarry Smith M->was_assembled = PETSC_TRUE; 195182094794SBarry Smith M->assembled = PETSC_FALSE; 195282094794SBarry Smith } 195382094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 195482094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 195582094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 195682094794SBarry Smith ii = aij->i; 195782094794SBarry Smith jj = aij->j; 195882094794SBarry Smith aa = aij->a; 195982094794SBarry Smith for (i=0; i<m; i++) { 196082094794SBarry Smith row = rstart/bs + i; 196182094794SBarry Smith nz = ii[i+1] - ii[i]; 196282094794SBarry Smith cwork = jj; jj += nz; 196382094794SBarry Smith vwork = aa; aa += nz; 196482094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 196582094794SBarry Smith } 196682094794SBarry Smith 196782094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196882094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 196982094794SBarry Smith *newmat = M; 197082094794SBarry Smith 197182094794SBarry Smith /* save submatrix used in processor for next request */ 197282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 197382094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 197482094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 197582094794SBarry Smith } 197682094794SBarry Smith 197782094794SBarry Smith PetscFunctionReturn(0); 197882094794SBarry Smith } 197982094794SBarry Smith 198082094794SBarry Smith #undef __FUNCT__ 198182094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 198282094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 198382094794SBarry Smith { 198482094794SBarry Smith MPI_Comm comm,pcomm; 198582094794SBarry Smith PetscInt first,local_size,nrows; 198682094794SBarry Smith const PetscInt *rows; 1987dbf0e21dSBarry Smith PetscMPIInt size; 198882094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 198982094794SBarry Smith PetscErrorCode ierr; 199082094794SBarry Smith 199182094794SBarry Smith PetscFunctionBegin; 199282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 199382094794SBarry Smith /* make a collective version of 'rowp' */ 199482094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 199582094794SBarry Smith if (pcomm==comm) { 199682094794SBarry Smith crowp = rowp; 199782094794SBarry Smith } else { 199882094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 199982094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 200082094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 200182094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 200282094794SBarry Smith } 200382094794SBarry Smith /* collect the global row permutation and invert it */ 200482094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 200582094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 200682094794SBarry Smith if (pcomm!=comm) { 200782094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 200882094794SBarry Smith } 200982094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 201082094794SBarry Smith /* get the local target indices */ 201182094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 201282094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 201382094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 201482094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 201582094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 201682094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 201782094794SBarry Smith /* the column permutation is so much easier; 201882094794SBarry Smith make a local version of 'colp' and invert it */ 201982094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2020dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2021dbf0e21dSBarry Smith if (size==1) { 202282094794SBarry Smith lcolp = colp; 202382094794SBarry Smith } else { 202482094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 202582094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 202782094794SBarry Smith } 2028dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 202982094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20304aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2031dbf0e21dSBarry Smith if (size>1) { 203282094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 203382094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 203482094794SBarry Smith } 203582094794SBarry Smith /* now we just get the submatrix */ 20364aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 203782094794SBarry Smith /* clean up */ 203882094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 203982094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 204082094794SBarry Smith PetscFunctionReturn(0); 204182094794SBarry Smith } 204282094794SBarry Smith 20438c7482ecSBarry Smith #undef __FUNCT__ 20448c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20458c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20468c7482ecSBarry Smith { 20478c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20488c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20498c7482ecSBarry Smith 20508c7482ecSBarry Smith PetscFunctionBegin; 20518c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20528c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20538c7482ecSBarry Smith PetscFunctionReturn(0); 20548c7482ecSBarry Smith } 20558c7482ecSBarry Smith 2056f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2057f6d58c54SBarry Smith 2058f6d58c54SBarry Smith #undef __FUNCT__ 2059f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2060f6d58c54SBarry Smith /* 2061f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2062f6d58c54SBarry Smith */ 2063f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2064f6d58c54SBarry Smith { 2065f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2066f6d58c54SBarry Smith PetscErrorCode ierr; 2067f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2068f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2069f6d58c54SBarry Smith const PetscInt *is; 2070f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2071f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2072f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2073f6d58c54SBarry Smith IS *isa; 2074f6d58c54SBarry Smith PetscTruth done,flg; 2075f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2076f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2077f6d58c54SBarry Smith 2078f6d58c54SBarry Smith PetscFunctionBegin; 2079f6d58c54SBarry Smith if (!mat->assembled) { 2080f6d58c54SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2081f6d58c54SBarry Smith } 2082f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2083f6d58c54SBarry Smith 2084f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2085f6d58c54SBarry Smith 2086f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2087f6d58c54SBarry Smith M = mat->rmap->n/bs; 2088f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2089f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2090f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2091f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2092f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2093f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2094f6d58c54SBarry Smith 2095f6d58c54SBarry Smith c->ncolors = nis; 2096f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2097f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2098f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2099f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2100f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2101f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2102f6d58c54SBarry Smith 2103f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2104f6d58c54SBarry Smith if (!baij->colmap) { 2105f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2106f6d58c54SBarry Smith } 2107f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2108f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2109f6d58c54SBarry Smith 2110f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2111f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2112f6d58c54SBarry Smith 2113f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2114f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2115f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2116f6d58c54SBarry Smith c->ncolumns[i] = n; 2117f6d58c54SBarry Smith if (n) { 2118f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2119f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2120f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2121f6d58c54SBarry Smith } else { 2122f6d58c54SBarry Smith c->columns[i] = 0; 2123f6d58c54SBarry Smith } 2124f6d58c54SBarry Smith 2125f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2126f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2127f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2128f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt*),&ncolsonproc);CHKERRQ(ierr); 2129f6d58c54SBarry Smith disp = ncolsonproc + size; 2130f6d58c54SBarry Smith 2131f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2132f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2133f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2134f6d58c54SBarry Smith if (!nctot) { 2135f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2136f6d58c54SBarry Smith } 2137f6d58c54SBarry Smith 2138f6d58c54SBarry Smith disp[0] = 0; 2139f6d58c54SBarry Smith for (j=1; j<size; j++) { 2140f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2141f6d58c54SBarry Smith } 2142f6d58c54SBarry Smith 2143f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2144f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2145f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2146f6d58c54SBarry Smith ierr = PetscFree(ncolsonproc);CHKERRQ(ierr); 2147f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2148f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2149f6d58c54SBarry Smith nctot = n; 2150f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2151f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2152f6d58c54SBarry Smith } else { 2153f6d58c54SBarry Smith SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2154f6d58c54SBarry Smith } 2155f6d58c54SBarry Smith 2156f6d58c54SBarry Smith /* 2157f6d58c54SBarry Smith Mark all rows affect by these columns 2158f6d58c54SBarry Smith */ 2159f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2160f6d58c54SBarry Smith flg = PETSC_FALSE; 2161f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2162f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2163f6d58c54SBarry Smith /* crude, fast version */ 2164f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2165f6d58c54SBarry Smith /* loop over columns*/ 2166f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2167f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2168f6d58c54SBarry Smith col = ltog[cols[j]]; 2169f6d58c54SBarry Smith } else { 2170f6d58c54SBarry Smith col = cols[j]; 2171f6d58c54SBarry Smith } 2172f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2173f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2174f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2175f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2176f6d58c54SBarry Smith } else { 2177f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2178f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr) 2179f6d58c54SBarry Smith colb --; 2180f6d58c54SBarry Smith #else 2181f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2182f6d58c54SBarry Smith #endif 2183f6d58c54SBarry Smith if (colb == -1) { 2184f6d58c54SBarry Smith m = 0; 2185f6d58c54SBarry Smith } else { 2186f6d58c54SBarry Smith colb = colb/bs; 2187f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2188f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2189f6d58c54SBarry Smith } 2190f6d58c54SBarry Smith } 2191f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2192f6d58c54SBarry Smith for (k=0; k<m; k++) { 2193f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2194f6d58c54SBarry Smith } 2195f6d58c54SBarry Smith } 2196f6d58c54SBarry Smith 2197f6d58c54SBarry Smith /* count the number of hits */ 2198f6d58c54SBarry Smith nrows = 0; 2199f6d58c54SBarry Smith for (j=0; j<M; j++) { 2200f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2201f6d58c54SBarry Smith } 2202f6d58c54SBarry Smith c->nrows[i] = nrows; 2203f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2204f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2205f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2206f6d58c54SBarry Smith nrows = 0; 2207f6d58c54SBarry Smith for (j=0; j<M; j++) { 2208f6d58c54SBarry Smith if (rowhit[j]) { 2209f6d58c54SBarry Smith c->rows[i][nrows] = j; 2210f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2211f6d58c54SBarry Smith nrows++; 2212f6d58c54SBarry Smith } 2213f6d58c54SBarry Smith } 2214f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2215f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2216f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2217f6d58c54SBarry Smith rowhit[M] = M; 2218f6d58c54SBarry Smith nrows = 0; 2219f6d58c54SBarry Smith /* loop over columns*/ 2220f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2221f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2222f6d58c54SBarry Smith col = ltog[cols[j]]; 2223f6d58c54SBarry Smith } else { 2224f6d58c54SBarry Smith col = cols[j]; 2225f6d58c54SBarry Smith } 2226f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2227f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2228f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2229f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2230f6d58c54SBarry Smith } else { 2231f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2232f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2233f6d58c54SBarry Smith colb --; 2234f6d58c54SBarry Smith #else 2235f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2236f6d58c54SBarry Smith #endif 2237f6d58c54SBarry Smith if (colb == -1) { 2238f6d58c54SBarry Smith m = 0; 2239f6d58c54SBarry Smith } else { 2240f6d58c54SBarry Smith colb = colb/bs; 2241f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2242f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2243f6d58c54SBarry Smith } 2244f6d58c54SBarry Smith } 2245f6d58c54SBarry Smith 2246f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2247f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2248f6d58c54SBarry Smith for (k=0; k<m; k++) { 2249f6d58c54SBarry Smith currentcol = *rows++; 2250f6d58c54SBarry Smith /* is it already in the list? */ 2251f6d58c54SBarry Smith do { 2252f6d58c54SBarry Smith mfm = fm; 2253f6d58c54SBarry Smith fm = rowhit[fm]; 2254f6d58c54SBarry Smith } while (fm < currentcol); 2255f6d58c54SBarry Smith /* not in list so add it */ 2256f6d58c54SBarry Smith if (fm != currentcol) { 2257f6d58c54SBarry Smith nrows++; 2258f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2259f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2260f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2261f6d58c54SBarry Smith rowhit[currentcol] = fm; 2262f6d58c54SBarry Smith fm = currentcol; 2263f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2264f6d58c54SBarry Smith } else { 2265f6d58c54SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2266f6d58c54SBarry Smith } 2267f6d58c54SBarry Smith } 2268f6d58c54SBarry Smith } 2269f6d58c54SBarry Smith c->nrows[i] = nrows; 2270f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2271f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2272f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2273f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2274f6d58c54SBarry Smith nrows = 0; 2275f6d58c54SBarry Smith fm = rowhit[M]; 2276f6d58c54SBarry Smith do { 2277f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2278f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2279f6d58c54SBarry Smith fm = rowhit[fm]; 2280f6d58c54SBarry Smith } while (fm < M); 2281f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2282f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2283f6d58c54SBarry Smith } 2284f6d58c54SBarry Smith 2285f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2286f6d58c54SBarry Smith /* 2287f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2288f6d58c54SBarry Smith */ 2289f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2290f6d58c54SBarry Smith PetscInt *garray; 2291f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2292f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2293f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2294f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2295f6d58c54SBarry Smith } 2296f6d58c54SBarry Smith } 2297f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2298f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2299f6d58c54SBarry Smith CHKMEMQ; 2300f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2301f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2302f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2303f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2304f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2305f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2306f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2307f6d58c54SBarry Smith colb = col - cstart; 2308f6d58c54SBarry Smith } else { 2309f6d58c54SBarry Smith /* column is in "off-processor" part */ 2310f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2311f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2312f6d58c54SBarry Smith colb --; 2313f6d58c54SBarry Smith #else 2314f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2315f6d58c54SBarry Smith #endif 2316f6d58c54SBarry Smith colb = colb/bs; 2317f6d58c54SBarry Smith colb += cend - cstart; 2318f6d58c54SBarry Smith } 2319f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2320f6d58c54SBarry Smith } 2321f6d58c54SBarry Smith } 2322f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2323f6d58c54SBarry Smith /* Get gtol mapping */ 2324f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2325f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2326f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2327f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2328f6d58c54SBarry Smith 2329f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2330f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2331f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2332f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2333f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2334f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2335f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2336f6d58c54SBarry Smith } 2337f6d58c54SBarry Smith } 2338f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2339f6d58c54SBarry Smith } 2340f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2341f6d58c54SBarry Smith 2342f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2343f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2344f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2345f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2346f6d58c54SBarry Smith CHKMEMQ; 2347f6d58c54SBarry Smith PetscFunctionReturn(0); 2348f6d58c54SBarry Smith } 2349f6d58c54SBarry Smith 2350f6d58c54SBarry Smith #undef __FUNCT__ 2351f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2352f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2353f6d58c54SBarry Smith { 2354f6d58c54SBarry Smith Mat B; 2355f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2356f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2357f6d58c54SBarry Smith Mat_SeqAIJ *b; 2358f6d58c54SBarry Smith PetscErrorCode ierr; 2359f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2360f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2361f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2362f6d58c54SBarry Smith 2363f6d58c54SBarry Smith PetscFunctionBegin; 2364f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2365f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2366f6d58c54SBarry Smith 2367f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2368f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2369f6d58c54SBarry Smith */ 2370f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2371f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2372f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2373f6d58c54SBarry Smith } 2374f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2375f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2376f6d58c54SBarry Smith displs = recvcounts + size; 2377f6d58c54SBarry Smith for (i=0; i<size; i++) { 2378f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2379f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2380f6d58c54SBarry Smith } 2381f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2382f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2383f6d58c54SBarry Smith #else 2384f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2385f6d58c54SBarry Smith #endif 2386f6d58c54SBarry Smith /* --------------------------------------------------------------- 2387f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2388f6d58c54SBarry Smith */ 2389f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2390f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2391f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2392f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2393f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2394f6d58c54SBarry Smith 2395f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2396f6d58c54SBarry Smith Copy my part of matrix column indices over 2397f6d58c54SBarry Smith */ 2398f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2399f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2400f6d58c54SBarry Smith a_jsendbuf = ad->j; 2401f6d58c54SBarry Smith b_jsendbuf = bd->j; 2402f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2403f6d58c54SBarry Smith cnt = 0; 2404f6d58c54SBarry Smith for (i=0; i<n; i++) { 2405f6d58c54SBarry Smith 2406f6d58c54SBarry Smith /* put in lower diagonal portion */ 2407f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2408f6d58c54SBarry Smith while (m > 0) { 2409f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2410f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2411f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2412f6d58c54SBarry Smith m--; 2413f6d58c54SBarry Smith } 2414f6d58c54SBarry Smith 2415f6d58c54SBarry Smith /* put in diagonal portion */ 2416f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2417f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2418f6d58c54SBarry Smith } 2419f6d58c54SBarry Smith 2420f6d58c54SBarry Smith /* put in upper diagonal portion */ 2421f6d58c54SBarry Smith while (m-- > 0) { 2422f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2423f6d58c54SBarry Smith } 2424f6d58c54SBarry Smith } 2425f6d58c54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2426f6d58c54SBarry Smith 2427f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2428f6d58c54SBarry Smith Gather all column indices to all processors 2429f6d58c54SBarry Smith */ 2430f6d58c54SBarry Smith for (i=0; i<size; i++) { 2431f6d58c54SBarry Smith recvcounts[i] = 0; 2432f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2433f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2434f6d58c54SBarry Smith } 2435f6d58c54SBarry Smith } 2436f6d58c54SBarry Smith displs[0] = 0; 2437f6d58c54SBarry Smith for (i=1; i<size; i++) { 2438f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2439f6d58c54SBarry Smith } 2440f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2441f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2442f6d58c54SBarry Smith #else 2443f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2444f6d58c54SBarry Smith #endif 2445f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2446f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2447f6d58c54SBarry Smith */ 2448f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2449f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2450f6d58c54SBarry Smith /* set the b->i indices */ 2451f6d58c54SBarry Smith b->i[0] = 0; 2452f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2453f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2454f6d58c54SBarry Smith } 2455f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2456f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2457f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2458f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2459f6d58c54SBarry Smith 2460f6d58c54SBarry Smith if (A->symmetric){ 2461f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2462f6d58c54SBarry Smith } else if (A->hermitian) { 2463f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2464f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2465f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2466f6d58c54SBarry Smith } 2467f6d58c54SBarry Smith *newmat = B; 2468f6d58c54SBarry Smith PetscFunctionReturn(0); 2469f6d58c54SBarry Smith } 2470f6d58c54SBarry Smith 2471f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2472f6d58c54SBarry Smith 24738c7482ecSBarry Smith 247479bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2475cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2476cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2477cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2478cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2479cc2dc46cSBarry Smith MatMult_MPIBAIJ, 248097304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24817c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24827c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2483cc2dc46cSBarry Smith 0, 2484cc2dc46cSBarry Smith 0, 2485cc2dc46cSBarry Smith 0, 248697304618SKris Buschelman /*10*/ 0, 2487cc2dc46cSBarry Smith 0, 2488cc2dc46cSBarry Smith 0, 2489cc2dc46cSBarry Smith 0, 2490cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 249197304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24927fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2493cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2494cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2495cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 249697304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2497cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2498cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2499cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2500d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2501cc2dc46cSBarry Smith 0, 2502cc2dc46cSBarry Smith 0, 2503cc2dc46cSBarry Smith 0, 2504cc2dc46cSBarry Smith 0, 2505d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2506273d9f13SBarry Smith 0, 2507cc2dc46cSBarry Smith 0, 2508cc2dc46cSBarry Smith 0, 2509cc2dc46cSBarry Smith 0, 2510d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2511cc2dc46cSBarry Smith 0, 2512cc2dc46cSBarry Smith 0, 2513cc2dc46cSBarry Smith 0, 2514cc2dc46cSBarry Smith 0, 2515d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2516cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2517cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2518cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 25193c896bc6SHong Zhang MatCopy_MPIBAIJ, 2520d519adbfSMatthew Knepley /*44*/ 0, 2521cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2522cc2dc46cSBarry Smith 0, 2523cc2dc46cSBarry Smith 0, 2524cc2dc46cSBarry Smith 0, 2525d519adbfSMatthew Knepley /*49*/ 0, 2526cc2dc46cSBarry Smith 0, 2527cc2dc46cSBarry Smith 0, 2528cc2dc46cSBarry Smith 0, 2529cc2dc46cSBarry Smith 0, 2530f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2531cc2dc46cSBarry Smith 0, 2532cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 253382094794SBarry Smith MatPermute_MPIBAIJ, 2534cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2535d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2536f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2537f14a1c24SBarry Smith MatView_MPIBAIJ, 2538357abbc8SBarry Smith 0, 25397843d17aSBarry Smith 0, 2540d519adbfSMatthew Knepley /*64*/ 0, 25417843d17aSBarry Smith 0, 25427843d17aSBarry Smith 0, 25437843d17aSBarry Smith 0, 25447843d17aSBarry Smith 0, 2545d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 25467843d17aSBarry Smith 0, 254797304618SKris Buschelman 0, 254897304618SKris Buschelman 0, 254997304618SKris Buschelman 0, 2550d519adbfSMatthew Knepley /*74*/ 0, 2551f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 255297304618SKris Buschelman 0, 255397304618SKris Buschelman 0, 255497304618SKris Buschelman 0, 2555d519adbfSMatthew Knepley /*79*/ 0, 255697304618SKris Buschelman 0, 255797304618SKris Buschelman 0, 255897304618SKris Buschelman 0, 2559865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2560d519adbfSMatthew Knepley /*84*/ 0, 2561865e5f61SKris Buschelman 0, 2562865e5f61SKris Buschelman 0, 2563865e5f61SKris Buschelman 0, 2564865e5f61SKris Buschelman 0, 2565d519adbfSMatthew Knepley /*89*/ 0, 2566865e5f61SKris Buschelman 0, 2567865e5f61SKris Buschelman 0, 2568865e5f61SKris Buschelman 0, 2569865e5f61SKris Buschelman 0, 2570d519adbfSMatthew Knepley /*94*/ 0, 2571865e5f61SKris Buschelman 0, 2572865e5f61SKris Buschelman 0, 257399cafbc1SBarry Smith 0, 257499cafbc1SBarry Smith 0, 2575d519adbfSMatthew Knepley /*99*/ 0, 257699cafbc1SBarry Smith 0, 257799cafbc1SBarry Smith 0, 257899cafbc1SBarry Smith 0, 257999cafbc1SBarry Smith 0, 2580d519adbfSMatthew Knepley /*104*/0, 258199cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25828c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 25838c7482ecSBarry Smith 0, 25848c7482ecSBarry Smith 0, 2585d519adbfSMatthew Knepley /*109*/0, 25868c7482ecSBarry Smith 0, 25878c7482ecSBarry Smith 0, 25888c7482ecSBarry Smith 0, 25898c7482ecSBarry Smith 0, 2590f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 25918c7482ecSBarry Smith 0, 25928c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 25938c7482ecSBarry Smith }; 259479bdfe76SSatish Balay 2595e18c124aSSatish Balay EXTERN_C_BEGIN 25964a2ae208SSatish Balay #undef __FUNCT__ 25974a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2598be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 25995ef9f2a5SBarry Smith { 26005ef9f2a5SBarry Smith PetscFunctionBegin; 26015ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26025ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26035ef9f2a5SBarry Smith PetscFunctionReturn(0); 26045ef9f2a5SBarry Smith } 2605e18c124aSSatish Balay EXTERN_C_END 260679bdfe76SSatish Balay 2607273d9f13SBarry Smith EXTERN_C_BEGIN 2608f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2609d94109b8SHong Zhang EXTERN_C_END 2610d94109b8SHong Zhang 2611b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2612aac34f13SBarry Smith #undef __FUNCT__ 2613aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2614cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2615aac34f13SBarry Smith { 2616b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2617b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2618b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2619b8d659d7SLisandro Dalcin PetscScalar *values=0; 2620aac34f13SBarry Smith PetscErrorCode ierr; 2621aac34f13SBarry Smith 2622aac34f13SBarry Smith PetscFunctionBegin; 2623b8d659d7SLisandro Dalcin 2624b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 2625*26283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2626*26283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2627*26283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2628*26283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2629d0f46423SBarry Smith m = B->rmap->n/bs; 2630d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2631d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2632d0f46423SBarry Smith cend = B->cmap->rend/bs; 2633b8d659d7SLisandro Dalcin 2634cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2635aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2636aac34f13SBarry Smith o_nnz = d_nnz + m; 2637aac34f13SBarry Smith for (i=0; i<m; i++) { 2638cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2639b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2640b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2641cf12db73SBarry Smith JJ = jj + ii[i]; 2642b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2643aac34f13SBarry Smith if (*JJ >= cstart) break; 2644aac34f13SBarry Smith JJ++; 2645aac34f13SBarry Smith } 2646aac34f13SBarry Smith d = 0; 2647b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2648aac34f13SBarry Smith if (*JJ++ >= cend) break; 2649aac34f13SBarry Smith d++; 2650aac34f13SBarry Smith } 2651aac34f13SBarry Smith d_nnz[i] = d; 2652b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2653aac34f13SBarry Smith } 2654aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2655aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2656aac34f13SBarry Smith 2657b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2658b8d659d7SLisandro Dalcin if (!values) { 2659b8d659d7SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2660b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2661b8d659d7SLisandro Dalcin } 2662b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2663b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2664cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2665cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2666cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2667b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2668aac34f13SBarry Smith } 2669aac34f13SBarry Smith 2670b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2671aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2672aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2673aac34f13SBarry Smith 2674aac34f13SBarry Smith PetscFunctionReturn(0); 2675aac34f13SBarry Smith } 2676b8d659d7SLisandro Dalcin EXTERN_C_END 2677aac34f13SBarry Smith 2678aac34f13SBarry Smith #undef __FUNCT__ 2679aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2680aac34f13SBarry Smith /*@C 2681aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2682aac34f13SBarry Smith (the default parallel PETSc format). 2683aac34f13SBarry Smith 2684aac34f13SBarry Smith Collective on MPI_Comm 2685aac34f13SBarry Smith 2686aac34f13SBarry Smith Input Parameters: 2687aac34f13SBarry Smith + A - the matrix 2688aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2689aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2690aac34f13SBarry Smith - v - optional values in the matrix 2691aac34f13SBarry Smith 2692aac34f13SBarry Smith Level: developer 2693aac34f13SBarry Smith 2694aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2695aac34f13SBarry Smith 2696aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2697aac34f13SBarry Smith @*/ 2698be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2699aac34f13SBarry Smith { 2700aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2701aac34f13SBarry Smith 2702aac34f13SBarry Smith PetscFunctionBegin; 2703aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2704aac34f13SBarry Smith if (f) { 2705aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2706aac34f13SBarry Smith } 2707aac34f13SBarry Smith PetscFunctionReturn(0); 2708aac34f13SBarry Smith } 2709aac34f13SBarry Smith 2710d94109b8SHong Zhang EXTERN_C_BEGIN 27114a2ae208SSatish Balay #undef __FUNCT__ 2712a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2713be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2714a23d5eceSKris Buschelman { 2715a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2716dfbe8321SBarry Smith PetscErrorCode ierr; 2717db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2718a23d5eceSKris Buschelman 2719a23d5eceSKris Buschelman PetscFunctionBegin; 2720db4efbfdSBarry Smith if (bs < 0) { 27217adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2722db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 27238c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2724db4efbfdSBarry Smith bs = PetscAbs(bs); 2725db4efbfdSBarry Smith } 2726db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2727db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2728db4efbfdSBarry Smith } 2729db4efbfdSBarry Smith bs = newbs; 2730db4efbfdSBarry Smith 2731a23d5eceSKris Buschelman 2732a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2733a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2734a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 273577431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 273677431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2737899cda47SBarry Smith 2738*26283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 2739*26283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 2740*26283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 2741*26283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2742899cda47SBarry Smith 2743a23d5eceSKris Buschelman if (d_nnz) { 2744d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 274577431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2746a23d5eceSKris Buschelman } 2747a23d5eceSKris Buschelman } 2748a23d5eceSKris Buschelman if (o_nnz) { 2749d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 275077431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2751a23d5eceSKris Buschelman } 2752a23d5eceSKris Buschelman } 2753a23d5eceSKris Buschelman 2754a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2755a23d5eceSKris Buschelman b->bs2 = bs*bs; 2756d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2757d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2758d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2759d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2760a23d5eceSKris Buschelman 2761a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2762d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2763a23d5eceSKris Buschelman } 2764d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2765d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2766d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2767d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2768a23d5eceSKris Buschelman 2769526dfc15SBarry Smith if (!B->preallocated) { 2770f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2771d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 27729c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 277352e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2774f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2775d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 27769c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 277752e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 27787adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2779526dfc15SBarry Smith } 2780a23d5eceSKris Buschelman 2781526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2782526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2783526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2784a23d5eceSKris Buschelman PetscFunctionReturn(0); 2785a23d5eceSKris Buschelman } 2786a23d5eceSKris Buschelman EXTERN_C_END 2787a23d5eceSKris Buschelman 2788a23d5eceSKris Buschelman EXTERN_C_BEGIN 2789be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2790be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 279192b32695SKris Buschelman EXTERN_C_END 27925bf65638SKris Buschelman 279382094794SBarry Smith 279482094794SBarry Smith EXTERN_C_BEGIN 279582094794SBarry Smith #undef __FUNCT__ 279682094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 279782094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 279882094794SBarry Smith { 279982094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 280082094794SBarry Smith PetscErrorCode ierr; 280182094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 280282094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 280382094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 280482094794SBarry Smith 280582094794SBarry Smith PetscFunctionBegin; 280682094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 280782094794SBarry Smith ii[0] = 0; 280882094794SBarry Smith CHKMEMQ; 280982094794SBarry Smith for (i=0; i<M; i++) { 281082094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 281182094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 281282094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 281382094794SBarry Smith /* remove one from count of matrix has diagonal */ 281482094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 281582094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 281682094794SBarry Smith } 281782094794SBarry Smith CHKMEMQ; 281882094794SBarry Smith } 281982094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 282082094794SBarry Smith cnt = 0; 282182094794SBarry Smith for (i=0; i<M; i++) { 282282094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 282382094794SBarry Smith if (garray[jo[j]] > rstart) break; 282482094794SBarry Smith jj[cnt++] = garray[jo[j]]; 282582094794SBarry Smith CHKMEMQ; 282682094794SBarry Smith } 282782094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 282882094794SBarry Smith if (jd[k] != i) { 282982094794SBarry Smith jj[cnt++] = rstart + jd[k]; 283082094794SBarry Smith CHKMEMQ; 283182094794SBarry Smith } 283282094794SBarry Smith } 283382094794SBarry Smith for (;j<io[i+1]; j++) { 283482094794SBarry Smith jj[cnt++] = garray[jo[j]]; 283582094794SBarry Smith CHKMEMQ; 283682094794SBarry Smith } 283782094794SBarry Smith } 283882094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 283982094794SBarry Smith PetscFunctionReturn(0); 284082094794SBarry Smith } 2841dbf0e21dSBarry Smith EXTERN_C_END 284282094794SBarry Smith 28430bad9183SKris Buschelman /*MC 2844fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28450bad9183SKris Buschelman 28460bad9183SKris Buschelman Options Database Keys: 28478c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 28488c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28498c07d4e3SBarry Smith - -mat_use_hash_table <fact> 28500bad9183SKris Buschelman 28510bad9183SKris Buschelman Level: beginner 28520bad9183SKris Buschelman 28530bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 28540bad9183SKris Buschelman M*/ 28550bad9183SKris Buschelman 285692b32695SKris Buschelman EXTERN_C_BEGIN 2857a23d5eceSKris Buschelman #undef __FUNCT__ 28584a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2859be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2860273d9f13SBarry Smith { 2861273d9f13SBarry Smith Mat_MPIBAIJ *b; 2862dfbe8321SBarry Smith PetscErrorCode ierr; 2863273d9f13SBarry Smith PetscTruth flg; 2864273d9f13SBarry Smith 2865273d9f13SBarry Smith PetscFunctionBegin; 286638f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 286782502324SSatish Balay B->data = (void*)b; 286882502324SSatish Balay 2869085a36d4SBarry Smith 2870273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2871273d9f13SBarry Smith B->mapping = 0; 2872273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2873273d9f13SBarry Smith 2874273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28757adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 28767adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2877273d9f13SBarry Smith 2878273d9f13SBarry Smith /* build local table of row and column ownerships */ 2879899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2880273d9f13SBarry Smith 2881273d9f13SBarry Smith /* build cache for off array entries formed */ 28827adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2883273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2884273d9f13SBarry Smith b->colmap = PETSC_NULL; 2885273d9f13SBarry Smith b->garray = PETSC_NULL; 2886273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2887273d9f13SBarry Smith 2888273d9f13SBarry Smith /* stuff used in block assembly */ 2889273d9f13SBarry Smith b->barray = 0; 2890273d9f13SBarry Smith 2891273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2892273d9f13SBarry Smith b->lvec = 0; 2893273d9f13SBarry Smith b->Mvctx = 0; 2894273d9f13SBarry Smith 2895273d9f13SBarry Smith /* stuff for MatGetRow() */ 2896273d9f13SBarry Smith b->rowindices = 0; 2897273d9f13SBarry Smith b->rowvalues = 0; 2898273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2899273d9f13SBarry Smith 2900273d9f13SBarry Smith /* hash table stuff */ 2901273d9f13SBarry Smith b->ht = 0; 2902273d9f13SBarry Smith b->hd = 0; 2903273d9f13SBarry Smith b->ht_size = 0; 2904273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2905273d9f13SBarry Smith b->ht_fact = 0; 2906273d9f13SBarry Smith b->ht_total_ct = 0; 2907273d9f13SBarry Smith b->ht_insert_ct = 0; 2908273d9f13SBarry Smith 29097adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29108c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2911273d9f13SBarry Smith if (flg) { 2912f6275e2eSBarry Smith PetscReal fact = 1.39; 29134e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 29148c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2915273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2916273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 29171e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2918273d9f13SBarry Smith } 29198c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 29208c07d4e3SBarry Smith 292182094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 292282094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 292382094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 2924273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2925273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2926273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2927273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2928273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2929273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2930273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2931273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2932273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2933a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2934a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2935a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2936aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 293744ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 2938aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 293992b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 294092b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 294192b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 29425bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 29435bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 29445bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 294517667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 2946273d9f13SBarry Smith PetscFunctionReturn(0); 2947273d9f13SBarry Smith } 2948273d9f13SBarry Smith EXTERN_C_END 2949273d9f13SBarry Smith 2950209238afSKris Buschelman /*MC 2951002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2952209238afSKris Buschelman 2953209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2954209238afSKris Buschelman and MATMPIBAIJ otherwise. 2955209238afSKris Buschelman 2956209238afSKris Buschelman Options Database Keys: 2957209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2958209238afSKris Buschelman 2959209238afSKris Buschelman Level: beginner 2960209238afSKris Buschelman 2961aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2962209238afSKris Buschelman M*/ 2963209238afSKris Buschelman 2964209238afSKris Buschelman EXTERN_C_BEGIN 2965209238afSKris Buschelman #undef __FUNCT__ 2966209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2967be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 2968dfbe8321SBarry Smith { 29696849ba73SBarry Smith PetscErrorCode ierr; 2970b24ad042SBarry Smith PetscMPIInt size; 2971209238afSKris Buschelman 2972209238afSKris Buschelman PetscFunctionBegin; 29737adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2974209238afSKris Buschelman if (size == 1) { 2975209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2976209238afSKris Buschelman } else { 2977209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2978209238afSKris Buschelman } 2979209238afSKris Buschelman PetscFunctionReturn(0); 2980209238afSKris Buschelman } 2981209238afSKris Buschelman EXTERN_C_END 2982209238afSKris Buschelman 29834a2ae208SSatish Balay #undef __FUNCT__ 29844a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2985273d9f13SBarry Smith /*@C 2986aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2987273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2988273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2989273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2990273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2991273d9f13SBarry Smith 2992273d9f13SBarry Smith Collective on Mat 2993273d9f13SBarry Smith 2994273d9f13SBarry Smith Input Parameters: 2995273d9f13SBarry Smith + A - the matrix 2996273d9f13SBarry Smith . bs - size of blockk 2997273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2998273d9f13SBarry Smith submatrix (same for all local rows) 2999273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3000273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3001273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3002273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3003273d9f13SBarry Smith submatrix (same for all local rows). 3004273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3005273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3006273d9f13SBarry Smith each block row) or PETSC_NULL. 3007273d9f13SBarry Smith 300849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith Options Database Keys: 30118c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 30128c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3013273d9f13SBarry Smith 3014273d9f13SBarry Smith Notes: 3015273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3016273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3017273d9f13SBarry Smith 3018273d9f13SBarry Smith Storage Information: 3019273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3020273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3021273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3022273d9f13SBarry Smith local matrix (a rectangular submatrix). 3023273d9f13SBarry Smith 3024273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3025273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3026273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3027273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3028273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3029273d9f13SBarry Smith 3030273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3031273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3032273d9f13SBarry Smith 3033273d9f13SBarry Smith .vb 3034273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3035273d9f13SBarry Smith ------------------- 3036273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3037273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3038273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3039273d9f13SBarry Smith ------------------- 3040273d9f13SBarry Smith .ve 3041273d9f13SBarry Smith 3042273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3043273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3044273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3045273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3046273d9f13SBarry Smith 3047273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3048273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3049273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3050273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3051273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3052273d9f13SBarry Smith matrices. 3053273d9f13SBarry Smith 3054aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3055aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3056aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3057aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3058aa95bbe8SBarry Smith 3059273d9f13SBarry Smith Level: intermediate 3060273d9f13SBarry Smith 3061273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3062273d9f13SBarry Smith 3063aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3064273d9f13SBarry Smith @*/ 3065be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3066273d9f13SBarry Smith { 3067b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3068273d9f13SBarry Smith 3069273d9f13SBarry Smith PetscFunctionBegin; 3070a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3071a23d5eceSKris Buschelman if (f) { 3072a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3073273d9f13SBarry Smith } 3074273d9f13SBarry Smith PetscFunctionReturn(0); 3075273d9f13SBarry Smith } 3076273d9f13SBarry Smith 30774a2ae208SSatish Balay #undef __FUNCT__ 30784a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 307979bdfe76SSatish Balay /*@C 308079bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 308179bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 308279bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 308379bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 308479bdfe76SSatish Balay performance can be increased by more than a factor of 50. 308579bdfe76SSatish Balay 3086db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3087db81eaa0SLois Curfman McInnes 308879bdfe76SSatish Balay Input Parameters: 3089db81eaa0SLois Curfman McInnes + comm - MPI communicator 309079bdfe76SSatish Balay . bs - size of blockk 309179bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 309292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 309392e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 309492e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 309592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 309692e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3097be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3098be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 309947a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 310079bdfe76SSatish Balay submatrix (same for all local rows) 310147a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 310292e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3103db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 310447a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 310579bdfe76SSatish Balay submatrix (same for all local rows). 310647a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 310792e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 310892e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 310979bdfe76SSatish Balay 311079bdfe76SSatish Balay Output Parameter: 311179bdfe76SSatish Balay . A - the matrix 311279bdfe76SSatish Balay 3113db81eaa0SLois Curfman McInnes Options Database Keys: 31148c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31158c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31163ffaccefSLois Curfman McInnes 3117175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3118ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3119175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3120175b88e8SBarry Smith 3121b259b22eSLois Curfman McInnes Notes: 312249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 312349a6f317SBarry Smith 312447a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 312547a75d0bSBarry Smith 312679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 312779bdfe76SSatish Balay (possibly both). 312879bdfe76SSatish Balay 3129be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3130be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3131be79a94dSBarry Smith 313279bdfe76SSatish Balay Storage Information: 313379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 313479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 313579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 313679bdfe76SSatish Balay local matrix (a rectangular submatrix). 313779bdfe76SSatish Balay 313879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 313979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 314079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 314179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 314279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 314379bdfe76SSatish Balay 314479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 314579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 314679bdfe76SSatish Balay 3147db81eaa0SLois Curfman McInnes .vb 3148db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3149db81eaa0SLois Curfman McInnes ------------------- 3150db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3151db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3152db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3153db81eaa0SLois Curfman McInnes ------------------- 3154db81eaa0SLois Curfman McInnes .ve 315579bdfe76SSatish Balay 315679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 315779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 315879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 315957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 316079bdfe76SSatish Balay 3161d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3162d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 316379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 316492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 316592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31666da5968aSLois Curfman McInnes matrices. 316779bdfe76SSatish Balay 3168027ccd11SLois Curfman McInnes Level: intermediate 3169027ccd11SLois Curfman McInnes 317092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 317179bdfe76SSatish Balay 3172aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 317379bdfe76SSatish Balay @*/ 3174be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 317579bdfe76SSatish Balay { 31766849ba73SBarry Smith PetscErrorCode ierr; 3177b24ad042SBarry Smith PetscMPIInt size; 317879bdfe76SSatish Balay 3179d64ed03dSBarry Smith PetscFunctionBegin; 3180f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3181f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3182d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3183273d9f13SBarry Smith if (size > 1) { 3184273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3185273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3186273d9f13SBarry Smith } else { 3187273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3188273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 31893914022bSBarry Smith } 31903a40ed3dSBarry Smith PetscFunctionReturn(0); 319179bdfe76SSatish Balay } 3192026e39d0SSatish Balay 31934a2ae208SSatish Balay #undef __FUNCT__ 31944a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 31956849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 31960ac07820SSatish Balay { 31970ac07820SSatish Balay Mat mat; 31980ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3199dfbe8321SBarry Smith PetscErrorCode ierr; 3200b24ad042SBarry Smith PetscInt len=0; 32010ac07820SSatish Balay 3202d64ed03dSBarry Smith PetscFunctionBegin; 32030ac07820SSatish Balay *newmat = 0; 32047adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3205d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32067adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32071d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32087fff6886SHong Zhang 32094beb1cfeSHong Zhang mat->factor = matin->factor; 3210273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32110ac07820SSatish Balay mat->assembled = PETSC_TRUE; 32127fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 32137fff6886SHong Zhang 3214273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3215d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 32160ac07820SSatish Balay a->bs2 = oldmat->bs2; 32170ac07820SSatish Balay a->mbs = oldmat->mbs; 32180ac07820SSatish Balay a->nbs = oldmat->nbs; 32190ac07820SSatish Balay a->Mbs = oldmat->Mbs; 32200ac07820SSatish Balay a->Nbs = oldmat->Nbs; 32210ac07820SSatish Balay 3222*26283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 3223*26283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3224899cda47SBarry Smith 32250ac07820SSatish Balay a->size = oldmat->size; 32260ac07820SSatish Balay a->rank = oldmat->rank; 3227aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3228aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3229aef5e8e0SSatish Balay a->rowindices = 0; 32300ac07820SSatish Balay a->rowvalues = 0; 32310ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 323230793edcSSatish Balay a->barray = 0; 3233899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3234899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3235899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3236899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32370ac07820SSatish Balay 3238133cdb44SSatish Balay /* hash table stuff */ 3239133cdb44SSatish Balay a->ht = 0; 3240133cdb44SSatish Balay a->hd = 0; 3241133cdb44SSatish Balay a->ht_size = 0; 3242133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 324325fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3244133cdb44SSatish Balay a->ht_total_ct = 0; 3245133cdb44SSatish Balay a->ht_insert_ct = 0; 3246133cdb44SSatish Balay 3247899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 32487adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 3249d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 32500ac07820SSatish Balay if (oldmat->colmap) { 3251aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 32520f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 325348e59246SSatish Balay #else 3254b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 325552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3256b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 325748e59246SSatish Balay #endif 32580ac07820SSatish Balay } else a->colmap = 0; 32594beb1cfeSHong Zhang 32600ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3261b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 326252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3263b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 32640ac07820SSatish Balay } else a->garray = 0; 32650ac07820SSatish Balay 32660ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 326752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 32680ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 326952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 32707fff6886SHong Zhang 32712e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 327252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 32732e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 327452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 32757adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 32760ac07820SSatish Balay *newmat = mat; 32774beb1cfeSHong Zhang 32783a40ed3dSBarry Smith PetscFunctionReturn(0); 32790ac07820SSatish Balay } 328057b952d6SSatish Balay 3281e090d566SSatish Balay #include "petscsys.h" 328257b952d6SSatish Balay 32834a2ae208SSatish Balay #undef __FUNCT__ 32844a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3285a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 328657b952d6SSatish Balay { 328757b952d6SSatish Balay Mat A; 32886849ba73SBarry Smith PetscErrorCode ierr; 3289b24ad042SBarry Smith int fd; 3290b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 329187828ca2SBarry Smith PetscScalar *vals,*buf; 329257b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 329357b952d6SSatish Balay MPI_Status status; 3294b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3295b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3296910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3297167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3298dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3299910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3300dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 330157b952d6SSatish Balay 3302d64ed03dSBarry Smith PetscFunctionBegin; 330377925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33048c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33058c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 330657b952d6SSatish Balay 3307d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3308d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 330957b952d6SSatish Balay if (!rank) { 3310b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3311e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3312552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 33136c5fab8fSBarry Smith } 3314d64ed03dSBarry Smith 3315b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 331657b952d6SSatish Balay M = header[1]; N = header[2]; 331757b952d6SSatish Balay 331829bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 331957b952d6SSatish Balay 332057b952d6SSatish Balay /* 332157b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 332257b952d6SSatish Balay divisible by the blocksize 332357b952d6SSatish Balay */ 332457b952d6SSatish Balay Mbs = M/bs; 3325dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 332657b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 332757b952d6SSatish Balay else Mbs++; 332857b952d6SSatish Balay if (extra_rows && !rank) { 33291e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 333057b952d6SSatish Balay } 3331537820f0SBarry Smith 333257b952d6SSatish Balay /* determine ownership of all rows */ 333357b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 333457b952d6SSatish Balay m = mbs*bs; 3335dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3336b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3337167e7480SBarry Smith 3338167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3339167e7480SBarry Smith if (!rank) { 3340167e7480SBarry Smith mmax = rowners[1]; 3341167e7480SBarry Smith for (i=2; i<size; i++) { 3342167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3343167e7480SBarry Smith } 3344ca02efcfSSatish Balay mmax*=bs; 3345167e7480SBarry Smith } else mmax = m; 3346167e7480SBarry Smith 334757b952d6SSatish Balay rowners[0] = 0; 3348cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3349cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 335057b952d6SSatish Balay rstart = rowners[rank]; 335157b952d6SSatish Balay rend = rowners[rank+1]; 335257b952d6SSatish Balay 335357b952d6SSatish Balay /* distribute row lengths to all processors */ 335419c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 335557b952d6SSatish Balay if (!rank) { 3356dc231df0SBarry Smith mend = m; 3357dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3358dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3359dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3360dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3361b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3362b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3363dc231df0SBarry Smith for (j=0; j<m; j++) { 3364dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3365dc231df0SBarry Smith } 3366dc231df0SBarry Smith for (i=1; i<size; i++) { 3367dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3368dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3369dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3370dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3371dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3372dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 337357b952d6SSatish Balay procsnz[i] += rowlengths[j]; 337457b952d6SSatish Balay } 3375dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 337657b952d6SSatish Balay } 3377606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3378dc231df0SBarry Smith } else { 3379dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3380dc231df0SBarry Smith } 338157b952d6SSatish Balay 3382dc231df0SBarry Smith if (!rank) { 338357b952d6SSatish Balay /* determine max buffer needed and allocate it */ 33848a8e0b3aSBarry Smith maxnz = procsnz[0]; 3385cdc0ba36SBarry Smith for (i=1; i<size; i++) { 338657b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 338757b952d6SSatish Balay } 3388b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 338957b952d6SSatish Balay 339057b952d6SSatish Balay /* read in my part of the matrix column indices */ 339157b952d6SSatish Balay nz = procsnz[0]; 339219c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 339357b952d6SSatish Balay mycols = ibuf; 3394cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3395e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3396cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3397cee3aa6bSSatish Balay 339857b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 339957b952d6SSatish Balay for (i=1; i<size-1; i++) { 340057b952d6SSatish Balay nz = procsnz[i]; 3401e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3402b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 340357b952d6SSatish Balay } 340457b952d6SSatish Balay /* read in the stuff for the last proc */ 340557b952d6SSatish Balay if (size != 1) { 340657b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3407e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 340857b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3409b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 341057b952d6SSatish Balay } 3411606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3412d64ed03dSBarry Smith } else { 341357b952d6SSatish Balay /* determine buffer space needed for message */ 341457b952d6SSatish Balay nz = 0; 341557b952d6SSatish Balay for (i=0; i<m; i++) { 341657b952d6SSatish Balay nz += locrowlens[i]; 341757b952d6SSatish Balay } 341819c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 341957b952d6SSatish Balay mycols = ibuf; 342057b952d6SSatish Balay /* receive message of column indices*/ 3421b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3422b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 342329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 342457b952d6SSatish Balay } 342557b952d6SSatish Balay 342657b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3427dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3428dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3429dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3430dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3431dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 343257b952d6SSatish Balay rowcount = 0; nzcount = 0; 343357b952d6SSatish Balay for (i=0; i<mbs; i++) { 343457b952d6SSatish Balay dcount = 0; 343557b952d6SSatish Balay odcount = 0; 343657b952d6SSatish Balay for (j=0; j<bs; j++) { 343757b952d6SSatish Balay kmax = locrowlens[rowcount]; 343857b952d6SSatish Balay for (k=0; k<kmax; k++) { 343957b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 344057b952d6SSatish Balay if (!mask[tmp]) { 344157b952d6SSatish Balay mask[tmp] = 1; 344257b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 344357b952d6SSatish Balay else masked1[dcount++] = tmp; 344457b952d6SSatish Balay } 344557b952d6SSatish Balay } 344657b952d6SSatish Balay rowcount++; 344757b952d6SSatish Balay } 3448cee3aa6bSSatish Balay 344957b952d6SSatish Balay dlens[i] = dcount; 345057b952d6SSatish Balay odlens[i] = odcount; 3451cee3aa6bSSatish Balay 345257b952d6SSatish Balay /* zero out the mask elements we set */ 345357b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 345457b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 345557b952d6SSatish Balay } 3456cee3aa6bSSatish Balay 345757b952d6SSatish Balay /* create our matrix */ 3458f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3459f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 346078ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 346178ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 346278ae41b4SKris Buschelman 346357b952d6SSatish Balay if (!rank) { 346419c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 346557b952d6SSatish Balay /* read in my part of the matrix numerical values */ 346657b952d6SSatish Balay nz = procsnz[0]; 346757b952d6SSatish Balay vals = buf; 3468cee3aa6bSSatish Balay mycols = ibuf; 3469cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3470e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3471cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3472537820f0SBarry Smith 347357b952d6SSatish Balay /* insert into matrix */ 347457b952d6SSatish Balay jj = rstart*bs; 347557b952d6SSatish Balay for (i=0; i<m; i++) { 3476dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 347757b952d6SSatish Balay mycols += locrowlens[i]; 347857b952d6SSatish Balay vals += locrowlens[i]; 347957b952d6SSatish Balay jj++; 348057b952d6SSatish Balay } 348157b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 348257b952d6SSatish Balay for (i=1; i<size-1; i++) { 348357b952d6SSatish Balay nz = procsnz[i]; 348457b952d6SSatish Balay vals = buf; 3485e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 34867adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 348757b952d6SSatish Balay } 348857b952d6SSatish Balay /* the last proc */ 348957b952d6SSatish Balay if (size != 1){ 349057b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3491cee3aa6bSSatish Balay vals = buf; 3492e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 349357b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 34947adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 349557b952d6SSatish Balay } 3496606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3497d64ed03dSBarry Smith } else { 349857b952d6SSatish Balay /* receive numeric values */ 349919c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 350057b952d6SSatish Balay 350157b952d6SSatish Balay /* receive message of values*/ 350257b952d6SSatish Balay vals = buf; 3503cee3aa6bSSatish Balay mycols = ibuf; 35047adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3505ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 350629bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 350757b952d6SSatish Balay 350857b952d6SSatish Balay /* insert into matrix */ 350957b952d6SSatish Balay jj = rstart*bs; 3510cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3511dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 351257b952d6SSatish Balay mycols += locrowlens[i]; 351357b952d6SSatish Balay vals += locrowlens[i]; 351457b952d6SSatish Balay jj++; 351557b952d6SSatish Balay } 351657b952d6SSatish Balay } 3517606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3518606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3519606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3520dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3521dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3522dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 35236d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 35246d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 352578ae41b4SKris Buschelman 352678ae41b4SKris Buschelman *newmat = A; 35273a40ed3dSBarry Smith PetscFunctionReturn(0); 352857b952d6SSatish Balay } 352957b952d6SSatish Balay 35304a2ae208SSatish Balay #undef __FUNCT__ 35314a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3532133cdb44SSatish Balay /*@ 3533133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3534133cdb44SSatish Balay 3535133cdb44SSatish Balay Input Parameters: 3536133cdb44SSatish Balay . mat - the matrix 3537133cdb44SSatish Balay . fact - factor 3538133cdb44SSatish Balay 3539fee21e36SBarry Smith Collective on Mat 3540fee21e36SBarry Smith 35418c890885SBarry Smith Level: advanced 35428c890885SBarry Smith 3543133cdb44SSatish Balay Notes: 35448c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3545133cdb44SSatish Balay 3546133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3547133cdb44SSatish Balay 3548133cdb44SSatish Balay .seealso: MatSetOption() 3549133cdb44SSatish Balay @*/ 3550be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3551133cdb44SSatish Balay { 3552dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 35535bf65638SKris Buschelman 35545bf65638SKris Buschelman PetscFunctionBegin; 35555bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 35565bf65638SKris Buschelman if (f) { 35575bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 35585bf65638SKris Buschelman } 35595bf65638SKris Buschelman PetscFunctionReturn(0); 35605bf65638SKris Buschelman } 35615bf65638SKris Buschelman 3562be1d678aSKris Buschelman EXTERN_C_BEGIN 35635bf65638SKris Buschelman #undef __FUNCT__ 35645bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3565be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 35665bf65638SKris Buschelman { 356725fdafccSSatish Balay Mat_MPIBAIJ *baij; 3568133cdb44SSatish Balay 3569133cdb44SSatish Balay PetscFunctionBegin; 3570133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3571133cdb44SSatish Balay baij->ht_fact = fact; 3572133cdb44SSatish Balay PetscFunctionReturn(0); 3573133cdb44SSatish Balay } 3574be1d678aSKris Buschelman EXTERN_C_END 3575f2a5309cSSatish Balay 35764a2ae208SSatish Balay #undef __FUNCT__ 35774a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3578be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3579f2a5309cSSatish Balay { 3580f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3581f2a5309cSSatish Balay PetscFunctionBegin; 3582f2a5309cSSatish Balay *Ad = a->A; 3583f2a5309cSSatish Balay *Ao = a->B; 3584195d93cdSBarry Smith *colmap = a->garray; 3585f2a5309cSSatish Balay PetscFunctionReturn(0); 3586f2a5309cSSatish Balay } 358785535b8eSBarry Smith 358885535b8eSBarry Smith /* 358985535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 359085535b8eSBarry Smith */ 359185535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 359285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 359385535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 359485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 359585535b8eSBarry Smith #endif 359685535b8eSBarry Smith 359785535b8eSBarry Smith #undef __FUNCT__ 359885535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 359985535b8eSBarry Smith /*@C 360085535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 360185535b8eSBarry Smith 360285535b8eSBarry Smith Collective on Mat 360385535b8eSBarry Smith 360485535b8eSBarry Smith Input Parameters: 360585535b8eSBarry Smith + mat - the matrix 360685535b8eSBarry Smith . min - number of input rows 360785535b8eSBarry Smith . im - input rows 360885535b8eSBarry Smith . nin - number of input columns 360985535b8eSBarry Smith . in - input columns 361085535b8eSBarry Smith . v - numerical values input 361185535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 361285535b8eSBarry Smith 361385535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 361485535b8eSBarry Smith 361585535b8eSBarry Smith Level: advanced 361685535b8eSBarry Smith 361785535b8eSBarry Smith .seealso: MatSetValuesBlocked() 361885535b8eSBarry Smith @*/ 361985535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 362085535b8eSBarry Smith { 362185535b8eSBarry Smith /* convert input arguments to C version */ 362285535b8eSBarry Smith Mat mat = *matin; 362385535b8eSBarry Smith PetscInt m = *min, n = *nin; 362485535b8eSBarry Smith InsertMode addv = *addvin; 362585535b8eSBarry Smith 362685535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 362785535b8eSBarry Smith const MatScalar *value; 362885535b8eSBarry Smith MatScalar *barray=baij->barray; 362985535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 363085535b8eSBarry Smith PetscErrorCode ierr; 363185535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 363285535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3633d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 363485535b8eSBarry Smith 363585535b8eSBarry Smith PetscFunctionBegin; 363685535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 363785535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 363885535b8eSBarry Smith mat->insertmode = addv; 363985535b8eSBarry Smith } 364085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 364185535b8eSBarry Smith else if (mat->insertmode != addv) { 364285535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 364385535b8eSBarry Smith } 364485535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 364585535b8eSBarry Smith #endif 364685535b8eSBarry Smith if (mat->assembled) { 364785535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 364885535b8eSBarry Smith mat->assembled = PETSC_FALSE; 364985535b8eSBarry Smith } 365085535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 365185535b8eSBarry Smith 365285535b8eSBarry Smith 365385535b8eSBarry Smith if(!barray) { 365485535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 365585535b8eSBarry Smith baij->barray = barray; 365685535b8eSBarry Smith } 365785535b8eSBarry Smith 365885535b8eSBarry Smith if (roworiented) { 365985535b8eSBarry Smith stepval = (n-1)*bs; 366085535b8eSBarry Smith } else { 366185535b8eSBarry Smith stepval = (m-1)*bs; 366285535b8eSBarry Smith } 366385535b8eSBarry Smith for (i=0; i<m; i++) { 366485535b8eSBarry Smith if (im[i] < 0) continue; 366585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 366685535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 366785535b8eSBarry Smith #endif 366885535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 366985535b8eSBarry Smith row = im[i] - rstart; 367085535b8eSBarry Smith for (j=0; j<n; j++) { 367185535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 367285535b8eSBarry Smith if ((roworiented) && (n == 1)) { 367385535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 367485535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 367585535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 367685535b8eSBarry Smith } else { /* Here a copy is required */ 367785535b8eSBarry Smith if (roworiented) { 367885535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 367985535b8eSBarry Smith } else { 368085535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 368185535b8eSBarry Smith } 368285535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 368385535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 368485535b8eSBarry Smith *barray++ = *value++; 368585535b8eSBarry Smith } 368685535b8eSBarry Smith } 368785535b8eSBarry Smith barray -=bs2; 368885535b8eSBarry Smith } 368985535b8eSBarry Smith 369085535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 369185535b8eSBarry Smith col = in[j] - cstart; 369297e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 369385535b8eSBarry Smith } 369485535b8eSBarry Smith else if (in[j] < 0) continue; 369585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 369685535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 369785535b8eSBarry Smith #endif 369885535b8eSBarry Smith else { 369985535b8eSBarry Smith if (mat->was_assembled) { 370085535b8eSBarry Smith if (!baij->colmap) { 370185535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 370285535b8eSBarry Smith } 370385535b8eSBarry Smith 370485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 370585535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 370685535b8eSBarry Smith { PetscInt data; 370785535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 370885535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 370985535b8eSBarry Smith } 371085535b8eSBarry Smith #else 371185535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 371285535b8eSBarry Smith #endif 371385535b8eSBarry Smith #endif 371485535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 371585535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 371685535b8eSBarry Smith col = (col - 1)/bs; 371785535b8eSBarry Smith #else 371885535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 371985535b8eSBarry Smith #endif 372085535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 372185535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 372285535b8eSBarry Smith col = in[j]; 372385535b8eSBarry Smith } 372485535b8eSBarry Smith } 372585535b8eSBarry Smith else col = in[j]; 372697e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 372785535b8eSBarry Smith } 372885535b8eSBarry Smith } 372985535b8eSBarry Smith } else { 373085535b8eSBarry Smith if (!baij->donotstash) { 373185535b8eSBarry Smith if (roworiented) { 373285535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 373385535b8eSBarry Smith } else { 373485535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 373585535b8eSBarry Smith } 373685535b8eSBarry Smith } 373785535b8eSBarry Smith } 373885535b8eSBarry Smith } 373985535b8eSBarry Smith 374085535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 374185535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 374285535b8eSBarry Smith PetscFunctionReturn(0); 374385535b8eSBarry Smith } 3744