1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 7*26cec326SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 8*26cec326SBarry Smith { 9*26cec326SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10*26cec326SBarry Smith 11*26cec326SBarry Smith PetscFunctionBegin; 12*26cec326SBarry Smith #if defined(PETSC_USE_LOG) 13*26cec326SBarry Smith PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N)); 14*26cec326SBarry Smith #endif 15*26cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->stash)); 16*26cec326SBarry Smith PetscCall(MatStashDestroy_Private(&mat->bstash)); 17*26cec326SBarry Smith PetscCall(MatDestroy(&baij->A)); 18*26cec326SBarry Smith PetscCall(MatDestroy(&baij->B)); 19*26cec326SBarry Smith #if defined(PETSC_USE_CTABLE) 20*26cec326SBarry Smith PetscCall(PetscHMapIDestroy(&baij->colmap)); 21*26cec326SBarry Smith #else 22*26cec326SBarry Smith PetscCall(PetscFree(baij->colmap)); 23*26cec326SBarry Smith #endif 24*26cec326SBarry Smith PetscCall(PetscFree(baij->garray)); 25*26cec326SBarry Smith PetscCall(VecDestroy(&baij->lvec)); 26*26cec326SBarry Smith PetscCall(VecScatterDestroy(&baij->Mvctx)); 27*26cec326SBarry Smith PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 28*26cec326SBarry Smith PetscCall(PetscFree(baij->barray)); 29*26cec326SBarry Smith PetscCall(PetscFree2(baij->hd, baij->ht)); 30*26cec326SBarry Smith PetscCall(PetscFree(baij->rangebs)); 31*26cec326SBarry Smith PetscCall(PetscFree(mat->data)); 32*26cec326SBarry Smith 33*26cec326SBarry Smith PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 34*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 35*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 36*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 37*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 38*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 39*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 40*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 41*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 42*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 43*26cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE) 44*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 45*26cec326SBarry Smith #endif 46*26cec326SBarry Smith PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 47*26cec326SBarry Smith PetscFunctionReturn(PETSC_SUCCESS); 48*26cec326SBarry Smith } 49*26cec326SBarry Smith 50*26cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and MatAssemblyEnd_MPI_Hash() */ 51*26cec326SBarry Smith #define TYPE BAIJ 52*26cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h" 53*26cec326SBarry Smith #undef TYPE 54*26cec326SBarry Smith 557ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 567ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 577ea3e4caSstefano_zampini #endif 587ea3e4caSstefano_zampini 59d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) 60d71ae5a4SJacob Faibussowitsch { 617843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 624e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 634e879edeSHong Zhang PetscScalar *va, *vv; 644e879edeSHong Zhang Vec vB, vA; 654e879edeSHong Zhang const PetscScalar *vb; 667843d17aSBarry Smith 677843d17aSBarry Smith PetscFunctionBegin; 689566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 699566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 704e879edeSHong Zhang 719566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 72985db425SBarry Smith if (idx) { 734e879edeSHong Zhang for (i = 0; i < m; i++) { 7426fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 7526fbe8dcSKarl Rupp } 76985db425SBarry Smith } 777843d17aSBarry Smith 789566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 809566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 817843d17aSBarry Smith 829566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 839566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 844e879edeSHong Zhang for (i = 0; i < m; i++) { 8526fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 864e879edeSHong Zhang vv[i] = vb[i]; 874e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 884e879edeSHong Zhang } else { 894e879edeSHong Zhang vv[i] = va[i]; 909371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 9126fbe8dcSKarl Rupp } 927843d17aSBarry Smith } 939566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 949566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 959566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 969566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 979566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 989566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1007843d17aSBarry Smith } 1017843d17aSBarry Smith 102d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 103d71ae5a4SJacob Faibussowitsch { 1047fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1057fc3c18eSBarry Smith 1067fc3c18eSBarry Smith PetscFunctionBegin; 1079566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 1089566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 1093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1107fc3c18eSBarry Smith } 1117fc3c18eSBarry Smith 112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 113d71ae5a4SJacob Faibussowitsch { 1147fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1157fc3c18eSBarry Smith 1167fc3c18eSBarry Smith PetscFunctionBegin; 1179566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 1189566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 1193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1207fc3c18eSBarry Smith } 1217fc3c18eSBarry Smith 122537820f0SBarry Smith /* 123537820f0SBarry Smith Local utility routine that creates a mapping from the global column 12457b952d6SSatish Balay number to the local number in the off-diagonal part of the local 125e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 12657b952d6SSatish Balay length of colmap equals the global matrix length. 12757b952d6SSatish Balay */ 128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 129d71ae5a4SJacob Faibussowitsch { 13057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 13157b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 132d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 13357b952d6SSatish Balay 134d64ed03dSBarry Smith PetscFunctionBegin; 135aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 136eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap)); 137c76ffc5fSJacob Faibussowitsch for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1)); 13848e59246SSatish Balay #else 1399566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 140928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 14148e59246SSatish Balay #endif 1423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14357b952d6SSatish Balay } 14457b952d6SSatish Balay 145d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 14680c1aa95SSatish Balay { \ 14780c1aa95SSatish Balay brow = row / bs; \ 1489371c9d4SSatish Balay rp = aj + ai[brow]; \ 1499371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 1509371c9d4SSatish Balay rmax = aimax[brow]; \ 1519371c9d4SSatish Balay nrow = ailen[brow]; \ 15280c1aa95SSatish Balay bcol = col / bs; \ 1539371c9d4SSatish Balay ridx = row % bs; \ 1549371c9d4SSatish Balay cidx = col % bs; \ 1559371c9d4SSatish Balay low = 0; \ 1569371c9d4SSatish Balay high = nrow; \ 157ab26458aSBarry Smith while (high - low > 3) { \ 158ab26458aSBarry Smith t = (low + high) / 2; \ 159ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 160ab26458aSBarry Smith else low = t; \ 161ab26458aSBarry Smith } \ 162ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 16380c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 16480c1aa95SSatish Balay if (rp[_i] == bcol) { \ 16580c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 166eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 167eada6651SSatish Balay else *bap = value; \ 168ac7a638eSSatish Balay goto a_noinsert; \ 16980c1aa95SSatish Balay } \ 17080c1aa95SSatish Balay } \ 17189280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1725f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 173fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 17480c1aa95SSatish Balay N = nrow++ - 1; \ 17580c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1769566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1779566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1789566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 17980c1aa95SSatish Balay rp[_i] = bcol; \ 18080c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 181ac7a638eSSatish Balay a_noinsert:; \ 18280c1aa95SSatish Balay ailen[brow] = nrow; \ 18380c1aa95SSatish Balay } 18457b952d6SSatish Balay 185d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 186ac7a638eSSatish Balay { \ 187ac7a638eSSatish Balay brow = row / bs; \ 1889371c9d4SSatish Balay rp = bj + bi[brow]; \ 1899371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 1909371c9d4SSatish Balay rmax = bimax[brow]; \ 1919371c9d4SSatish Balay nrow = bilen[brow]; \ 192ac7a638eSSatish Balay bcol = col / bs; \ 1939371c9d4SSatish Balay ridx = row % bs; \ 1949371c9d4SSatish Balay cidx = col % bs; \ 1959371c9d4SSatish Balay low = 0; \ 1969371c9d4SSatish Balay high = nrow; \ 197ac7a638eSSatish Balay while (high - low > 3) { \ 198ac7a638eSSatish Balay t = (low + high) / 2; \ 199ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 200ac7a638eSSatish Balay else low = t; \ 201ac7a638eSSatish Balay } \ 202ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 203ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 204ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 205ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 206ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 207ac7a638eSSatish Balay else *bap = value; \ 208ac7a638eSSatish Balay goto b_noinsert; \ 209ac7a638eSSatish Balay } \ 210ac7a638eSSatish Balay } \ 21189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 2125f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 213fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 214ac7a638eSSatish Balay N = nrow++ - 1; \ 215ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 2169566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 2179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 2189566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 219ac7a638eSSatish Balay rp[_i] = bcol; \ 220ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 221ac7a638eSSatish Balay b_noinsert:; \ 222ac7a638eSSatish Balay bilen[brow] = nrow; \ 223ac7a638eSSatish Balay } 224ac7a638eSSatish Balay 225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 226d71ae5a4SJacob Faibussowitsch { 22757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 22893fea6afSBarry Smith MatScalar value; 229ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 230b24ad042SBarry Smith PetscInt i, j, row, col; 231d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 232d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 233d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 23457b952d6SSatish Balay 235eada6651SSatish Balay /* Some Variables required in the macro */ 23680c1aa95SSatish Balay Mat A = baij->A; 23780c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 238b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 2393eda8832SBarry Smith MatScalar *aa = a->a; 240ac7a638eSSatish Balay 241ac7a638eSSatish Balay Mat B = baij->B; 242ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 243b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 2443eda8832SBarry Smith MatScalar *ba = b->a; 245ac7a638eSSatish Balay 246b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 247b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 2483eda8832SBarry Smith MatScalar *ap, *bap; 24980c1aa95SSatish Balay 250d64ed03dSBarry Smith PetscFunctionBegin; 25157b952d6SSatish Balay for (i = 0; i < m; i++) { 2525ef9f2a5SBarry Smith if (im[i] < 0) continue; 2535f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 25457b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 25557b952d6SSatish Balay row = im[i] - rstart_orig; 25657b952d6SSatish Balay for (j = 0; j < n; j++) { 25757b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 25857b952d6SSatish Balay col = in[j] - cstart_orig; 259db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 260db4deed7SKarl Rupp else value = v[i + j * m]; 261d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 262f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 263f7d195e4SLawrence Mitchell continue; 264f7d195e4SLawrence Mitchell } else { 265f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 26657b952d6SSatish Balay if (mat->was_assembled) { 26748a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 268aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 269eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col)); 270bba1ac68SSatish Balay col = col - 1; 27148e59246SSatish Balay #else 272bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 27348e59246SSatish Balay #endif 274c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 2759566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2768295de27SSatish Balay col = in[j]; 2779bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2789bf004c3SSatish Balay B = baij->B; 2799bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2809371c9d4SSatish Balay bimax = b->imax; 2819371c9d4SSatish Balay bi = b->i; 2829371c9d4SSatish Balay bilen = b->ilen; 2839371c9d4SSatish Balay bj = b->j; 2849bf004c3SSatish Balay ba = b->a; 285f7d195e4SLawrence Mitchell } else { 286f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 287f7d195e4SLawrence Mitchell col += in[j] % bs; 288f7d195e4SLawrence Mitchell } 2898295de27SSatish Balay } else col = in[j]; 290db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 291db4deed7SKarl Rupp else value = v[i + j * m]; 292d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2939566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 29457b952d6SSatish Balay } 29557b952d6SSatish Balay } 296d64ed03dSBarry Smith } else { 2975f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 29890f02eecSBarry Smith if (!baij->donotstash) { 2995080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 300ff2fd236SBarry Smith if (roworiented) { 3019566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 302ff2fd236SBarry Smith } else { 3039566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 30457b952d6SSatish Balay } 30557b952d6SSatish Balay } 30657b952d6SSatish Balay } 30790f02eecSBarry Smith } 3083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30957b952d6SSatish Balay } 31057b952d6SSatish Balay 311d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) 312d71ae5a4SJacob Faibussowitsch { 313880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 3148ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 315880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 3168ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 317880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 318880c6e6aSBarry Smith const PetscScalar *value = v; 319880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 320880c6e6aSBarry Smith 321880c6e6aSBarry Smith PetscFunctionBegin; 322880c6e6aSBarry Smith rp = aj + ai[row]; 323880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 324880c6e6aSBarry Smith rmax = imax[row]; 325880c6e6aSBarry Smith nrow = ailen[row]; 3268ab52850SBarry Smith value = v; 3278ab52850SBarry Smith low = 0; 3288ab52850SBarry Smith high = nrow; 329880c6e6aSBarry Smith while (high - low > 7) { 330880c6e6aSBarry Smith t = (low + high) / 2; 331880c6e6aSBarry Smith if (rp[t] > col) high = t; 332880c6e6aSBarry Smith else low = t; 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith for (i = low; i < high; i++) { 335880c6e6aSBarry Smith if (rp[i] > col) break; 336880c6e6aSBarry Smith if (rp[i] == col) { 337880c6e6aSBarry Smith bap = ap + bs2 * i; 338880c6e6aSBarry Smith if (roworiented) { 339880c6e6aSBarry Smith if (is == ADD_VALUES) { 3408ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 341ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++; 342880c6e6aSBarry Smith } 343880c6e6aSBarry Smith } else { 3448ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 345ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 346880c6e6aSBarry Smith } 347880c6e6aSBarry Smith } 348880c6e6aSBarry Smith } else { 349880c6e6aSBarry Smith if (is == ADD_VALUES) { 3508ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 351ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] += value[jj]; 352880c6e6aSBarry Smith bap += bs; 353880c6e6aSBarry Smith } 354880c6e6aSBarry Smith } else { 3558ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 356ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) bap[jj] = value[jj]; 357880c6e6aSBarry Smith bap += bs; 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith } 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith goto noinsert2; 362880c6e6aSBarry Smith } 363880c6e6aSBarry Smith } 364880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3655f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 366880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3679371c9d4SSatish Balay N = nrow++ - 1; 3689371c9d4SSatish Balay high++; 369880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3709566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3719566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 372880c6e6aSBarry Smith rp[i] = col; 373880c6e6aSBarry Smith bap = ap + bs2 * i; 374880c6e6aSBarry Smith if (roworiented) { 3758ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 376ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++; 377880c6e6aSBarry Smith } 378880c6e6aSBarry Smith } else { 3798ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 380ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *bap++ = *value++; 381880c6e6aSBarry Smith } 382880c6e6aSBarry Smith } 383880c6e6aSBarry Smith noinsert2:; 384880c6e6aSBarry Smith ailen[row] = nrow; 3853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 386880c6e6aSBarry Smith } 387880c6e6aSBarry Smith 3888ab52850SBarry Smith /* 3898ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3908ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3918ab52850SBarry Smith */ 392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 393d71ae5a4SJacob Faibussowitsch { 394ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 395dd6ea824SBarry Smith const PetscScalar *value; 396f15d580aSBarry Smith MatScalar *barray = baij->barray; 397ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 398899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 399899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 400d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 401ab26458aSBarry Smith 402b16ae2b1SBarry Smith PetscFunctionBegin; 40330793edcSSatish Balay if (!barray) { 4049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 40582502324SSatish Balay baij->barray = barray; 40630793edcSSatish Balay } 40730793edcSSatish Balay 40826fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 40926fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 41026fbe8dcSKarl Rupp 411ab26458aSBarry Smith for (i = 0; i < m; i++) { 4125ef9f2a5SBarry Smith if (im[i] < 0) continue; 4136bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 414ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 415ab26458aSBarry Smith row = im[i] - rstart; 416ab26458aSBarry Smith for (j = 0; j < n; j++) { 41715b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 41815b57d14SSatish Balay if ((roworiented) && (n == 1)) { 419f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 42015b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 421f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 42215b57d14SSatish Balay } else { /* Here a copy is required */ 423ab26458aSBarry Smith if (roworiented) { 42453ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 425ab26458aSBarry Smith } else { 42653ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 427abef11f7SSatish Balay } 42853ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 42926fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 43053ef36baSBarry Smith barray += bs; 43147513183SBarry Smith } 43230793edcSSatish Balay barray -= bs2; 43315b57d14SSatish Balay } 434abef11f7SSatish Balay 435abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 436abef11f7SSatish Balay col = in[j] - cstart; 4379566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 438f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 439f7d195e4SLawrence Mitchell continue; 440f7d195e4SLawrence Mitchell } else { 441f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 442ab26458aSBarry Smith if (mat->was_assembled) { 44348a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 444a5eb4965SSatish Balay 4452515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 446aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4479371c9d4SSatish Balay { 4489371c9d4SSatish Balay PetscInt data; 449eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 45008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 451fa46199cSSatish Balay } 45248e59246SSatish Balay #else 45308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 454a5eb4965SSatish Balay #endif 45548e59246SSatish Balay #endif 456aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 457eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 458fa46199cSSatish Balay col = (col - 1) / bs; 45948e59246SSatish Balay #else 460a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 46148e59246SSatish Balay #endif 4620e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 4639566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 464ab26458aSBarry Smith col = in[j]; 4655f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 466db4deed7SKarl Rupp } else col = in[j]; 4679566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 468ab26458aSBarry Smith } 469ab26458aSBarry Smith } 470d64ed03dSBarry Smith } else { 4715f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 472ab26458aSBarry Smith if (!baij->donotstash) { 473ff2fd236SBarry Smith if (roworiented) { 4749566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 475ff2fd236SBarry Smith } else { 4769566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 477ff2fd236SBarry Smith } 478abef11f7SSatish Balay } 479ab26458aSBarry Smith } 480ab26458aSBarry Smith } 4813ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 482ab26458aSBarry Smith } 4836fa18ffdSBarry Smith 4840bdbc534SSatish Balay #define HASH_KEY 0.6180339887 485b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 486b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 487b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 489d71ae5a4SJacob Faibussowitsch { 4900bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 491ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 492b24ad042SBarry Smith PetscInt i, j, row, col; 493d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 494d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 495d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 496329f5518SBarry Smith PetscReal tmp; 4973eda8832SBarry Smith MatScalar **HD = baij->hd, value; 498b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4990bdbc534SSatish Balay 5000bdbc534SSatish Balay PetscFunctionBegin; 5010bdbc534SSatish Balay for (i = 0; i < m; i++) { 50276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5035f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 5045f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 50576bd3646SJed Brown } 5060bdbc534SSatish Balay row = im[i]; 507c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5080bdbc534SSatish Balay for (j = 0; j < n; j++) { 5090bdbc534SSatish Balay col = in[j]; 510db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 511db4deed7SKarl Rupp else value = v[i + j * m]; 512b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 513c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 514c2760754SSatish Balay h1 = HASH(size, key, tmp); 5150bdbc534SSatish Balay 516c2760754SSatish Balay idx = h1; 51776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 518187ce0cbSSatish Balay insert_ct++; 519187ce0cbSSatish Balay total_ct++; 520187ce0cbSSatish Balay if (HT[idx] != key) { 5219371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5229371c9d4SSatish Balay ; 523187ce0cbSSatish Balay if (idx == size) { 5249371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5259371c9d4SSatish Balay ; 5265f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 527187ce0cbSSatish Balay } 528187ce0cbSSatish Balay } 52976bd3646SJed Brown } else if (HT[idx] != key) { 5309371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 5319371c9d4SSatish Balay ; 532c2760754SSatish Balay if (idx == size) { 5339371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 5349371c9d4SSatish Balay ; 5355f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 536c2760754SSatish Balay } 537c2760754SSatish Balay } 538c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 539c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 540c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 5410bdbc534SSatish Balay } 54226fbe8dcSKarl Rupp } else if (!baij->donotstash) { 543ff2fd236SBarry Smith if (roworiented) { 5449566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 545ff2fd236SBarry Smith } else { 5469566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 5470bdbc534SSatish Balay } 5480bdbc534SSatish Balay } 5490bdbc534SSatish Balay } 55076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 551abf3b562SBarry Smith baij->ht_total_ct += total_ct; 552abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 55376bd3646SJed Brown } 5543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 5550bdbc534SSatish Balay } 5560bdbc534SSatish Balay 557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) 558d71ae5a4SJacob Faibussowitsch { 5590bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 560ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 561b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 562899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 563d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 564b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 565329f5518SBarry Smith PetscReal tmp; 5663eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 567dd6ea824SBarry Smith const PetscScalar *v_t, *value; 568b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5690bdbc534SSatish Balay 570d0a41580SSatish Balay PetscFunctionBegin; 57126fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 57226fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 57326fbe8dcSKarl Rupp 5740bdbc534SSatish Balay for (i = 0; i < m; i++) { 57576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5765f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5775f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 57876bd3646SJed Brown } 5790bdbc534SSatish Balay row = im[i]; 580ab715e2cSSatish Balay v_t = v + i * nbs2; 581c2760754SSatish Balay if (row >= rstart && row < rend) { 5820bdbc534SSatish Balay for (j = 0; j < n; j++) { 5830bdbc534SSatish Balay col = in[j]; 5840bdbc534SSatish Balay 5850bdbc534SSatish Balay /* Look up into the Hash Table */ 586c2760754SSatish Balay key = row * Nbs + col + 1; 587c2760754SSatish Balay h1 = HASH(size, key, tmp); 5880bdbc534SSatish Balay 589c2760754SSatish Balay idx = h1; 59076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 591187ce0cbSSatish Balay total_ct++; 592187ce0cbSSatish Balay insert_ct++; 593187ce0cbSSatish Balay if (HT[idx] != key) { 5949371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5959371c9d4SSatish Balay ; 596187ce0cbSSatish Balay if (idx == size) { 5979371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5989371c9d4SSatish Balay ; 5995f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 600187ce0cbSSatish Balay } 601187ce0cbSSatish Balay } 60276bd3646SJed Brown } else if (HT[idx] != key) { 6039371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 6049371c9d4SSatish Balay ; 605c2760754SSatish Balay if (idx == size) { 6069371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 6079371c9d4SSatish Balay ; 6085f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 609c2760754SSatish Balay } 610c2760754SSatish Balay } 611c2760754SSatish Balay baij_a = HD[idx]; 6120bdbc534SSatish Balay if (roworiented) { 613c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 614187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 615187ce0cbSSatish Balay value = v_t; 616187ce0cbSSatish Balay v_t += bs; 617fef45726SSatish Balay if (addv == ADD_VALUES) { 618c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 619ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++; 620b4cc0f5aSSatish Balay } 621fef45726SSatish Balay } else { 622c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 623ad540459SPierre Jolivet for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++; 624fef45726SSatish Balay } 625fef45726SSatish Balay } 6260bdbc534SSatish Balay } else { 6270bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 628fef45726SSatish Balay if (addv == ADD_VALUES) { 629b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 630ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++; 631fef45726SSatish Balay } 632fef45726SSatish Balay } else { 633fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 634ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++; 635b4cc0f5aSSatish Balay } 6360bdbc534SSatish Balay } 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay } else { 6400bdbc534SSatish Balay if (!baij->donotstash) { 6410bdbc534SSatish Balay if (roworiented) { 6429566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6430bdbc534SSatish Balay } else { 6449566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 6450bdbc534SSatish Balay } 6460bdbc534SSatish Balay } 6470bdbc534SSatish Balay } 6480bdbc534SSatish Balay } 64976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 650abf3b562SBarry Smith baij->ht_total_ct += total_ct; 651abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 65276bd3646SJed Brown } 6533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 6540bdbc534SSatish Balay } 655133cdb44SSatish Balay 656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) 657d71ae5a4SJacob Faibussowitsch { 658d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 659d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 660d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 661d6de1c52SSatish Balay 662133cdb44SSatish Balay PetscFunctionBegin; 663d6de1c52SSatish Balay for (i = 0; i < m; i++) { 66454c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 66554c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 666d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 667d6de1c52SSatish Balay row = idxm[i] - bsrstart; 668d6de1c52SSatish Balay for (j = 0; j < n; j++) { 66954c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 67054c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 671d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 672d6de1c52SSatish Balay col = idxn[j] - bscstart; 6739566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 674d64ed03dSBarry Smith } else { 67548a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 676aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 677eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data)); 678fa46199cSSatish Balay data--; 67948e59246SSatish Balay #else 68048e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 68148e59246SSatish Balay #endif 68248e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 683d9d09a02SSatish Balay else { 68448e59246SSatish Balay col = data + idxn[j] % bs; 6859566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 686d6de1c52SSatish Balay } 687d6de1c52SSatish Balay } 688d6de1c52SSatish Balay } 689f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 690d6de1c52SSatish Balay } 6913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 692d6de1c52SSatish Balay } 693d6de1c52SSatish Balay 694d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) 695d71ae5a4SJacob Faibussowitsch { 696d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 697d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 698d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 699329f5518SBarry Smith PetscReal sum = 0.0; 7003eda8832SBarry Smith MatScalar *v; 701d6de1c52SSatish Balay 702d64ed03dSBarry Smith PetscFunctionBegin; 703d6de1c52SSatish Balay if (baij->size == 1) { 7049566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 705d6de1c52SSatish Balay } else { 706d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 707d6de1c52SSatish Balay v = amat->a; 7088a62d963SHong Zhang nz = amat->nz * bs2; 7098a62d963SHong Zhang for (i = 0; i < nz; i++) { 7109371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7119371c9d4SSatish Balay v++; 712d6de1c52SSatish Balay } 713d6de1c52SSatish Balay v = bmat->a; 7148a62d963SHong Zhang nz = bmat->nz * bs2; 7158a62d963SHong Zhang for (i = 0; i < nz; i++) { 7169371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 7179371c9d4SSatish Balay v++; 718d6de1c52SSatish Balay } 7191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7208f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7218a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7228a62d963SHong Zhang PetscReal *tmp, *tmp2; 723899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 7249566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 7259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 7269371c9d4SSatish Balay v = amat->a; 7279371c9d4SSatish Balay jj = amat->j; 7288a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 7298a62d963SHong Zhang for (j = 0; j < bs; j++) { 7308a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 7318a62d963SHong Zhang for (row = 0; row < bs; row++) { 7329371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7339371c9d4SSatish Balay v++; 7348a62d963SHong Zhang } 7358a62d963SHong Zhang } 7368a62d963SHong Zhang jj++; 7378a62d963SHong Zhang } 7389371c9d4SSatish Balay v = bmat->a; 7399371c9d4SSatish Balay jj = bmat->j; 7408a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 7418a62d963SHong Zhang for (j = 0; j < bs; j++) { 7428a62d963SHong Zhang col = bs * garray[*jj] + j; 7438a62d963SHong Zhang for (row = 0; row < bs; row++) { 7449371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 7459371c9d4SSatish Balay v++; 7468a62d963SHong Zhang } 7478a62d963SHong Zhang } 7488a62d963SHong Zhang jj++; 7498a62d963SHong Zhang } 7501c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 7518a62d963SHong Zhang *nrm = 0.0; 752d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 7538a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7548a62d963SHong Zhang } 7559566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 7569566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 7578a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 758577dd1f9SKris Buschelman PetscReal *sums; 7599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7608a62d963SHong Zhang sum = 0.0; 7618a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7628a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7638a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7648a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7658a62d963SHong Zhang for (i = 0; i < nz; i++) { 7668a62d963SHong Zhang for (col = 0; col < bs; col++) { 7678a62d963SHong Zhang for (row = 0; row < bs; row++) { 7689371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7699371c9d4SSatish Balay v++; 7708a62d963SHong Zhang } 7718a62d963SHong Zhang } 7728a62d963SHong Zhang } 7738a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7748a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7758a62d963SHong Zhang for (i = 0; i < nz; i++) { 7768a62d963SHong Zhang for (col = 0; col < bs; col++) { 7778a62d963SHong Zhang for (row = 0; row < bs; row++) { 7789371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7799371c9d4SSatish Balay v++; 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 7828a62d963SHong Zhang } 7838a62d963SHong Zhang for (row = 0; row < bs; row++) { 7848a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7858a62d963SHong Zhang } 7868a62d963SHong Zhang } 7871c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7889566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 789ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 790d64ed03dSBarry Smith } 7913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 792d6de1c52SSatish Balay } 79357b952d6SSatish Balay 794fef45726SSatish Balay /* 795fef45726SSatish Balay Creates the hash table, and sets the table 796fef45726SSatish Balay This table is created only once. 797fef45726SSatish Balay If new entried need to be added to the matrix 798fef45726SSatish Balay then the hash table has to be destroyed and 799fef45726SSatish Balay recreated. 800fef45726SSatish Balay */ 801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) 802d71ae5a4SJacob Faibussowitsch { 803596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 804596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 805596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 806b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 807fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 808899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 809b24ad042SBarry Smith PetscInt *HT, key; 8103eda8832SBarry Smith MatScalar **HD; 811329f5518SBarry Smith PetscReal tmp; 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813b24ad042SBarry Smith PetscInt ct = 0, max = 0; 8144a15367fSSatish Balay #endif 815fef45726SSatish Balay 816d64ed03dSBarry Smith PetscFunctionBegin; 8173ba16761SJacob Faibussowitsch if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS); 818fef45726SSatish Balay 819fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 820fca92195SBarry Smith ht_size = baij->ht_size; 8210bdbc534SSatish Balay 822fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8239566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 824b9e4cc15SSatish Balay HD = baij->hd; 825a07cd24cSSatish Balay HT = baij->ht; 826b9e4cc15SSatish Balay 827596b8d2eSBarry Smith /* Loop Over A */ 8280bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 829596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 8300bdbc534SSatish Balay row = i + rstart; 8310bdbc534SSatish Balay col = aj[j] + cstart; 832596b8d2eSBarry Smith 833187ce0cbSSatish Balay key = row * Nbs + col + 1; 834fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 835fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 836fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 837fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 838fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 839596b8d2eSBarry Smith break; 8406cf91177SBarry Smith #if defined(PETSC_USE_INFO) 841187ce0cbSSatish Balay } else { 842187ce0cbSSatish Balay ct++; 843187ce0cbSSatish Balay #endif 844596b8d2eSBarry Smith } 845187ce0cbSSatish Balay } 8466cf91177SBarry Smith #if defined(PETSC_USE_INFO) 847187ce0cbSSatish Balay if (k > max) max = k; 848187ce0cbSSatish Balay #endif 849596b8d2eSBarry Smith } 850596b8d2eSBarry Smith } 851596b8d2eSBarry Smith /* Loop Over B */ 8520bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 853596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 8540bdbc534SSatish Balay row = i + rstart; 8550bdbc534SSatish Balay col = garray[bj[j]]; 856187ce0cbSSatish Balay key = row * Nbs + col + 1; 857fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 858fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 859fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 860fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 861fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 862596b8d2eSBarry Smith break; 8636cf91177SBarry Smith #if defined(PETSC_USE_INFO) 864187ce0cbSSatish Balay } else { 865187ce0cbSSatish Balay ct++; 866187ce0cbSSatish Balay #endif 867596b8d2eSBarry Smith } 868187ce0cbSSatish Balay } 8696cf91177SBarry Smith #if defined(PETSC_USE_INFO) 870187ce0cbSSatish Balay if (k > max) max = k; 871187ce0cbSSatish Balay #endif 872596b8d2eSBarry Smith } 873596b8d2eSBarry Smith } 874596b8d2eSBarry Smith 875596b8d2eSBarry Smith /* Print Summary */ 8766cf91177SBarry Smith #if defined(PETSC_USE_INFO) 877fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 87826fbe8dcSKarl Rupp if (HT[i]) j++; 879c38d4ed2SBarry Smith } 8809566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 881187ce0cbSSatish Balay #endif 8823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 883596b8d2eSBarry Smith } 88457b952d6SSatish Balay 885d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) 886d71ae5a4SJacob Faibussowitsch { 887bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 888b24ad042SBarry Smith PetscInt nstash, reallocs; 889bbb85fb3SSatish Balay 890bbb85fb3SSatish Balay PetscFunctionBegin; 8913ba16761SJacob Faibussowitsch if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS); 892bbb85fb3SSatish Balay 8939566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8949566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8959566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8969566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8979566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8989566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 900bbb85fb3SSatish Balay } 901bbb85fb3SSatish Balay 902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) 903d71ae5a4SJacob Faibussowitsch { 904bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 90591c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 906b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 907e44c0bd4SBarry Smith PetscInt *row, *col; 908ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 9093eda8832SBarry Smith MatScalar *val; 910b24ad042SBarry Smith PetscMPIInt n; 911bbb85fb3SSatish Balay 912bbb85fb3SSatish Balay PetscFunctionBegin; 9135fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9144cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 915a2d1c673SSatish Balay while (1) { 9169566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 917a2d1c673SSatish Balay if (!flg) break; 918a2d1c673SSatish Balay 919bbb85fb3SSatish Balay for (i = 0; i < n;) { 920bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92126fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 92226fbe8dcSKarl Rupp if (row[j] != rstart) break; 92326fbe8dcSKarl Rupp } 924bbb85fb3SSatish Balay if (j < n) ncols = j - i; 925bbb85fb3SSatish Balay else ncols = n - i; 926bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 928bbb85fb3SSatish Balay i = j; 929bbb85fb3SSatish Balay } 930bbb85fb3SSatish Balay } 9319566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 932a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 933a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 934a2d1c673SSatish Balay restore the original flags */ 935a2d1c673SSatish Balay r1 = baij->roworiented; 936a2d1c673SSatish Balay r2 = a->roworiented; 93791c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 93826fbe8dcSKarl Rupp 9397c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9407c922b88SBarry Smith a->roworiented = PETSC_FALSE; 94126fbe8dcSKarl Rupp 94291c97fd4SSatish Balay (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 943a2d1c673SSatish Balay while (1) { 9449566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 945a2d1c673SSatish Balay if (!flg) break; 946a2d1c673SSatish Balay 947a2d1c673SSatish Balay for (i = 0; i < n;) { 948a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 94926fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 95026fbe8dcSKarl Rupp if (row[j] != rstart) break; 95126fbe8dcSKarl Rupp } 952a2d1c673SSatish Balay if (j < n) ncols = j - i; 953a2d1c673SSatish Balay else ncols = n - i; 9549566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 955a2d1c673SSatish Balay i = j; 956a2d1c673SSatish Balay } 957a2d1c673SSatish Balay } 9589566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 95926fbe8dcSKarl Rupp 960a2d1c673SSatish Balay baij->roworiented = r1; 961a2d1c673SSatish Balay a->roworiented = r2; 96226fbe8dcSKarl Rupp 96391c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 964bbb85fb3SSatish Balay } 965bbb85fb3SSatish Balay 9669566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9679566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 968bbb85fb3SSatish Balay 969bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9706aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 971bbb85fb3SSatish Balay /* 972bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 973bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 974bbb85fb3SSatish Balay */ 975bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9765f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 97748a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 978bbb85fb3SSatish Balay } 979bbb85fb3SSatish Balay 98048a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9819566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9829566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 983bbb85fb3SSatish Balay 9846cf91177SBarry Smith #if defined(PETSC_USE_INFO) 985bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9869566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 98726fbe8dcSKarl Rupp 988bbb85fb3SSatish Balay baij->ht_total_ct = 0; 989bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 990bbb85fb3SSatish Balay } 991bbb85fb3SSatish Balay #endif 992bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9939566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 99426fbe8dcSKarl Rupp 995bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 996bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 997bbb85fb3SSatish Balay } 998bbb85fb3SSatish Balay 9999566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 100026fbe8dcSKarl Rupp 1001f4259b30SLisandro Dalcin baij->rowvalues = NULL; 10024f9cfa9eSBarry Smith 10034f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 10044f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 1005e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 10061c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 1007e56f5c9eSBarry Smith } 10083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1009bbb85fb3SSatish Balay } 101057b952d6SSatish Balay 10117da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 10129804daf3SBarry Smith #include <petscdraw.h> 1013d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) 1014d71ae5a4SJacob Faibussowitsch { 101557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 10167da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1017d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1018ace3abfcSBarry Smith PetscBool iascii, isdraw; 1019b0a32e0cSBarry Smith PetscViewer sviewer; 1020f3ef73ceSBarry Smith PetscViewerFormat format; 102157b952d6SSatish Balay 1022d64ed03dSBarry Smith PetscFunctionBegin; 10239566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 10249566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 102532077d6dSBarry Smith if (iascii) { 10269566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 1027456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10284e220ebcSLois Curfman McInnes MatInfo info; 10299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 10309566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 10319566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 10329371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 10339371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 10349566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 10359566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10369566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 10379566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 10389566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10399566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 10409566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 10419566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 10423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1043fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 10449566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 10453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104604929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 10473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 104857b952d6SSatish Balay } 104957b952d6SSatish Balay } 105057b952d6SSatish Balay 10510f5bd95cSBarry Smith if (isdraw) { 1052b0a32e0cSBarry Smith PetscDraw draw; 1053ace3abfcSBarry Smith PetscBool isnull; 10549566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 10559566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 10563ba16761SJacob Faibussowitsch if (isnull) PetscFunctionReturn(PETSC_SUCCESS); 105757b952d6SSatish Balay } 105857b952d6SSatish Balay 10597da1fb6eSBarry Smith { 106057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 106157b952d6SSatish Balay Mat A; 106257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1063d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10643eda8832SBarry Smith MatScalar *a; 10653e219373SBarry Smith const char *matname; 106657b952d6SSatish Balay 1067f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1068f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10699566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1070dd400576SPatrick Sanan if (rank == 0) { 10719566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1072d64ed03dSBarry Smith } else { 10739566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 107457b952d6SSatish Balay } 10759566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10769566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10779566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 107857b952d6SSatish Balay 107957b952d6SSatish Balay /* copy over the A part */ 108057b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10819371c9d4SSatish Balay ai = Aloc->i; 10829371c9d4SSatish Balay aj = Aloc->j; 10839371c9d4SSatish Balay a = Aloc->a; 10849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 108557b952d6SSatish Balay 108657b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1087899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 108826fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 108957b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1090899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 109157b952d6SSatish Balay for (k = 0; k < bs; k++) { 10929566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10939371c9d4SSatish Balay col++; 10949371c9d4SSatish Balay a += bs; 109557b952d6SSatish Balay } 109657b952d6SSatish Balay } 109757b952d6SSatish Balay } 109857b952d6SSatish Balay /* copy over the B part */ 109957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 11009371c9d4SSatish Balay ai = Aloc->i; 11019371c9d4SSatish Balay aj = Aloc->j; 11029371c9d4SSatish Balay a = Aloc->a; 110357b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1104899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 110526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 110657b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 110757b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 110857b952d6SSatish Balay for (k = 0; k < bs; k++) { 11099566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 11109371c9d4SSatish Balay col++; 11119371c9d4SSatish Balay a += bs; 111257b952d6SSatish Balay } 111357b952d6SSatish Balay } 111457b952d6SSatish Balay } 11159566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 11169566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 11179566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 111855843e3eSBarry Smith /* 111955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1120b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 112155843e3eSBarry Smith */ 11229566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 112323a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1124dd400576SPatrick Sanan if (rank == 0) { 112523a3927dSBarry Smith if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname)); 11269566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer)); 112757b952d6SSatish Balay } 11289566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 11299566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 11309566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 113157b952d6SSatish Balay } 11323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 113357b952d6SSatish Balay } 113457b952d6SSatish Balay 1135618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 1136d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 1137d71ae5a4SJacob Faibussowitsch { 1138b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1139b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1140b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1141b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1142b51a4376SLisandro Dalcin PetscInt header[4], M, N, m, rs, cs, bs, nz, cnt, i, j, ja, jb, k, l; 1143b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1144b51a4376SLisandro Dalcin PetscScalar *matvals; 1145660746e0SBarry Smith 1146660746e0SBarry Smith PetscFunctionBegin; 11479566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1148b51a4376SLisandro Dalcin 1149b51a4376SLisandro Dalcin M = mat->rmap->N; 1150b51a4376SLisandro Dalcin N = mat->cmap->N; 1151b51a4376SLisandro Dalcin m = mat->rmap->n; 1152b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1153b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1154b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1155b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1156b51a4376SLisandro Dalcin 1157b51a4376SLisandro Dalcin /* write matrix header */ 1158660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 11599371c9d4SSatish Balay header[1] = M; 11609371c9d4SSatish Balay header[2] = N; 11619371c9d4SSatish Balay header[3] = nz; 11629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nz, &header[3], 1, MPIU_INT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 11639566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1164660746e0SBarry Smith 1165b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1167b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11689371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11699566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11709566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1171660746e0SBarry Smith 1172b51a4376SLisandro Dalcin /* fill in and store column indices */ 11739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1174b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1175b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1176b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1177b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11789371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1179660746e0SBarry Smith } 1180b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11819371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1182b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11839371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1184660746e0SBarry Smith } 1185660746e0SBarry Smith } 11865f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz); 11879566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11889566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1189660746e0SBarry Smith 1190b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1192b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1193b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1194b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1195b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11969371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1197660746e0SBarry Smith } 1198b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11999371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1200b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 12019371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1202660746e0SBarry Smith } 1203b51a4376SLisandro Dalcin } 12049566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 12059566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1206660746e0SBarry Smith 1207b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 12089566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 12093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1210660746e0SBarry Smith } 1211660746e0SBarry Smith 1212d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) 1213d71ae5a4SJacob Faibussowitsch { 1214ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 121557b952d6SSatish Balay 1216d64ed03dSBarry Smith PetscFunctionBegin; 12179566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 12189566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 12199566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 12209566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1221660746e0SBarry Smith if (iascii || isdraw || issocket) { 12229566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 12231baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 12243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 122557b952d6SSatish Balay } 122657b952d6SSatish Balay 1227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) 1228d71ae5a4SJacob Faibussowitsch { 1229cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1230b24ad042SBarry Smith PetscInt nt; 1231cee3aa6bSSatish Balay 1232d64ed03dSBarry Smith PetscFunctionBegin; 12339566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12345f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12359566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 1236da81f932SPierre Jolivet PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy"); 12379566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12389566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12399566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12409566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 1244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1245d71ae5a4SJacob Faibussowitsch { 1246cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1247d64ed03dSBarry Smith 1248d64ed03dSBarry Smith PetscFunctionBegin; 12499566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12509566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12519566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12533ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1254cee3aa6bSSatish Balay } 1255cee3aa6bSSatish Balay 1256d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) 1257d71ae5a4SJacob Faibussowitsch { 1258cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1259cee3aa6bSSatish Balay 1260d64ed03dSBarry Smith PetscFunctionBegin; 1261cee3aa6bSSatish Balay /* do nondiagonal part */ 12629566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1263cee3aa6bSSatish Balay /* do local part */ 12649566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1265e4a140f6SJunchao Zhang /* add partial results together */ 12669566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12679566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1269cee3aa6bSSatish Balay } 1270cee3aa6bSSatish Balay 1271d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) 1272d71ae5a4SJacob Faibussowitsch { 1273cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1274cee3aa6bSSatish Balay 1275d64ed03dSBarry Smith PetscFunctionBegin; 1276cee3aa6bSSatish Balay /* do nondiagonal part */ 12779566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1278cee3aa6bSSatish Balay /* do local part */ 12799566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1280e4a140f6SJunchao Zhang /* add partial results together */ 12819566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12829566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1284cee3aa6bSSatish Balay } 1285cee3aa6bSSatish Balay 1286cee3aa6bSSatish Balay /* 1287cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1288cee3aa6bSSatish Balay diagonal block 1289cee3aa6bSSatish Balay */ 1290d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) 1291d71ae5a4SJacob Faibussowitsch { 1292d64ed03dSBarry Smith PetscFunctionBegin; 12935f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12949566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12953ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1296cee3aa6bSSatish Balay } 1297cee3aa6bSSatish Balay 1298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) 1299d71ae5a4SJacob Faibussowitsch { 1300cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1301d64ed03dSBarry Smith 1302d64ed03dSBarry Smith PetscFunctionBegin; 13039566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 13049566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 13053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1306cee3aa6bSSatish Balay } 1307026e39d0SSatish Balay 1308d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1309d71ae5a4SJacob Faibussowitsch { 1310acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 131187828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1312d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1313d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1314899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1315acdf5bf4SSatish Balay 1316d64ed03dSBarry Smith PetscFunctionBegin; 13175f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 13185f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1319acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1320acdf5bf4SSatish Balay 1321acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1322acdf5bf4SSatish Balay /* 1323acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1324acdf5bf4SSatish Balay */ 1325acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1326b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1327bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1328acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 132926fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1330acdf5bf4SSatish Balay } 13319566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1332acdf5bf4SSatish Balay } 1333d9d09a02SSatish Balay lrow = row - brstart; 1334acdf5bf4SSatish Balay 13359371c9d4SSatish Balay pvA = &vworkA; 13369371c9d4SSatish Balay pcA = &cworkA; 13379371c9d4SSatish Balay pvB = &vworkB; 13389371c9d4SSatish Balay pcB = &cworkB; 13399371c9d4SSatish Balay if (!v) { 13409371c9d4SSatish Balay pvA = NULL; 13419371c9d4SSatish Balay pvB = NULL; 13429371c9d4SSatish Balay } 13439371c9d4SSatish Balay if (!idx) { 13449371c9d4SSatish Balay pcA = NULL; 13459371c9d4SSatish Balay if (!v) pcB = NULL; 13469371c9d4SSatish Balay } 13479566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13489566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1349acdf5bf4SSatish Balay nztot = nzA + nzB; 1350acdf5bf4SSatish Balay 1351acdf5bf4SSatish Balay cmap = mat->garray; 1352acdf5bf4SSatish Balay if (v || idx) { 1353acdf5bf4SSatish Balay if (nztot) { 1354acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1355b24ad042SBarry Smith PetscInt imark = -1; 1356acdf5bf4SSatish Balay if (v) { 1357acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1358acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1359d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1360acdf5bf4SSatish Balay else break; 1361acdf5bf4SSatish Balay } 1362acdf5bf4SSatish Balay imark = i; 1363acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1364acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1365acdf5bf4SSatish Balay } 1366acdf5bf4SSatish Balay if (idx) { 1367acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1368acdf5bf4SSatish Balay if (imark > -1) { 1369ad540459SPierre Jolivet for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1370acdf5bf4SSatish Balay } else { 1371acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 137226fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1373acdf5bf4SSatish Balay else break; 1374acdf5bf4SSatish Balay } 1375acdf5bf4SSatish Balay imark = i; 1376acdf5bf4SSatish Balay } 1377d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1378d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1379acdf5bf4SSatish Balay } 1380d64ed03dSBarry Smith } else { 1381f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1382f4259b30SLisandro Dalcin if (v) *v = NULL; 1383d212a18eSSatish Balay } 1384acdf5bf4SSatish Balay } 1385acdf5bf4SSatish Balay *nz = nztot; 13869566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13879566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13883ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1389acdf5bf4SSatish Balay } 1390acdf5bf4SSatish Balay 1391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) 1392d71ae5a4SJacob Faibussowitsch { 1393acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1394d64ed03dSBarry Smith 1395d64ed03dSBarry Smith PetscFunctionBegin; 13965f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1397acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1399acdf5bf4SSatish Balay } 1400acdf5bf4SSatish Balay 1401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 1402d71ae5a4SJacob Faibussowitsch { 140358667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1404d64ed03dSBarry Smith 1405d64ed03dSBarry Smith PetscFunctionBegin; 14069566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 14079566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 14083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140958667388SSatish Balay } 14100ac07820SSatish Balay 1411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) 1412d71ae5a4SJacob Faibussowitsch { 14134e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 14144e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 14153966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 14160ac07820SSatish Balay 1417d64ed03dSBarry Smith PetscFunctionBegin; 1418d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 141926fbe8dcSKarl Rupp 14209566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 142126fbe8dcSKarl Rupp 14229371c9d4SSatish Balay isend[0] = info->nz_used; 14239371c9d4SSatish Balay isend[1] = info->nz_allocated; 14249371c9d4SSatish Balay isend[2] = info->nz_unneeded; 14259371c9d4SSatish Balay isend[3] = info->memory; 14269371c9d4SSatish Balay isend[4] = info->mallocs; 142726fbe8dcSKarl Rupp 14289566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 142926fbe8dcSKarl Rupp 14309371c9d4SSatish Balay isend[0] += info->nz_used; 14319371c9d4SSatish Balay isend[1] += info->nz_allocated; 14329371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14339371c9d4SSatish Balay isend[3] += info->memory; 14349371c9d4SSatish Balay isend[4] += info->mallocs; 143526fbe8dcSKarl Rupp 14360ac07820SSatish Balay if (flag == MAT_LOCAL) { 14374e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14384e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14394e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14404e220ebcSLois Curfman McInnes info->memory = isend[3]; 14414e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14420ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14431c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 144426fbe8dcSKarl Rupp 14454e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14464e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14474e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14484e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14494e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14500ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14511c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 145226fbe8dcSKarl Rupp 14534e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14544e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14554e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14564e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14574e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 145898921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14594e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14604e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14614e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14630ac07820SSatish Balay } 14640ac07820SSatish Balay 1465d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) 1466d71ae5a4SJacob Faibussowitsch { 146758667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 146858667388SSatish Balay 1469d64ed03dSBarry Smith PetscFunctionBegin; 147012c028f9SKris Buschelman switch (op) { 1471512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 147212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 147328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1474a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 147512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 147643674050SBarry Smith MatCheckPreallocated(A, 1); 14779566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14789566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 147912c028f9SKris Buschelman break; 148012c028f9SKris Buschelman case MAT_ROW_ORIENTED: 148143674050SBarry Smith MatCheckPreallocated(A, 1); 14824e0d8c25SBarry Smith a->roworiented = flg; 148326fbe8dcSKarl Rupp 14849566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14859566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 148612c028f9SKris Buschelman break; 14878c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 1488d71ae5a4SJacob Faibussowitsch case MAT_SORTED_FULL: 1489d71ae5a4SJacob Faibussowitsch PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); 1490d71ae5a4SJacob Faibussowitsch break; 1491d71ae5a4SJacob Faibussowitsch case MAT_IGNORE_OFF_PROC_ENTRIES: 1492d71ae5a4SJacob Faibussowitsch a->donotstash = flg; 1493d71ae5a4SJacob Faibussowitsch break; 149412c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14954e0d8c25SBarry Smith a->ht_flag = flg; 1496abf3b562SBarry Smith a->ht_fact = 1.39; 149712c028f9SKris Buschelman break; 149877e54ba9SKris Buschelman case MAT_SYMMETRIC: 149977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15002188ac68SBarry Smith case MAT_HERMITIAN: 1501c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 15022188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1503b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1504b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1505b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 150677e54ba9SKris Buschelman break; 1507d71ae5a4SJacob Faibussowitsch default: 1508d71ae5a4SJacob Faibussowitsch SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1509d64ed03dSBarry Smith } 15103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 151158667388SSatish Balay } 151258667388SSatish Balay 1513d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) 1514d71ae5a4SJacob Faibussowitsch { 15150ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 15160ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 15170ac07820SSatish Balay Mat B; 1518d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1519d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 15203eda8832SBarry Smith MatScalar *a; 15210ac07820SSatish Balay 1522d64ed03dSBarry Smith PetscFunctionBegin; 15237fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1524cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 15259566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 15269566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 15279566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 15282e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 15299566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1530fc4dec0aSBarry Smith } else { 1531fc4dec0aSBarry Smith B = *matout; 1532fc4dec0aSBarry Smith } 15330ac07820SSatish Balay 15340ac07820SSatish Balay /* copy over the A part */ 15350ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 15369371c9d4SSatish Balay ai = Aloc->i; 15379371c9d4SSatish Balay aj = Aloc->j; 15389371c9d4SSatish Balay a = Aloc->a; 15399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15400ac07820SSatish Balay 15410ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1542899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 154326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15440ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1545899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15460ac07820SSatish Balay for (k = 0; k < bs; k++) { 15479566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 154826fbe8dcSKarl Rupp 15499371c9d4SSatish Balay col++; 15509371c9d4SSatish Balay a += bs; 15510ac07820SSatish Balay } 15520ac07820SSatish Balay } 15530ac07820SSatish Balay } 15540ac07820SSatish Balay /* copy over the B part */ 15550ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15569371c9d4SSatish Balay ai = Aloc->i; 15579371c9d4SSatish Balay aj = Aloc->j; 15589371c9d4SSatish Balay a = Aloc->a; 15590ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1560899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 156126fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15620ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15630ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15640ac07820SSatish Balay for (k = 0; k < bs; k++) { 15659566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 156626fbe8dcSKarl Rupp col++; 156726fbe8dcSKarl Rupp a += bs; 15680ac07820SSatish Balay } 15690ac07820SSatish Balay } 15700ac07820SSatish Balay } 15719566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15729566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15739566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15740ac07820SSatish Balay 1575cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 157648a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15780ac07820SSatish Balay } 15790e95ebc0SSatish Balay 1580d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) 1581d71ae5a4SJacob Faibussowitsch { 158236c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 158336c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1584b24ad042SBarry Smith PetscInt s1, s2, s3; 15850e95ebc0SSatish Balay 1586d64ed03dSBarry Smith PetscFunctionBegin; 15879566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 158836c4a09eSSatish Balay if (rr) { 15899566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15905f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 159136c4a09eSSatish Balay /* Overlap communication with computation. */ 15929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 159336c4a09eSSatish Balay } 15940e95ebc0SSatish Balay if (ll) { 15959566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15965f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1597dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15980e95ebc0SSatish Balay } 159936c4a09eSSatish Balay /* scale the diagonal block */ 1600dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 160136c4a09eSSatish Balay 160236c4a09eSSatish Balay if (rr) { 160336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 16049566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1605dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 160636c4a09eSSatish Balay } 16073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16080e95ebc0SSatish Balay } 16090e95ebc0SSatish Balay 1610d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1611d71ae5a4SJacob Faibussowitsch { 16120ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 161365a92638SMatthew G. Knepley PetscInt *lrows; 16146e520ac8SStefano Zampini PetscInt r, len; 161594342113SStefano Zampini PetscBool cong; 16160ac07820SSatish Balay 1617d64ed03dSBarry Smith PetscFunctionBegin; 16186e520ac8SStefano Zampini /* get locally owned rows */ 16199566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 162097b48c8fSBarry Smith /* fix right hand side if needed */ 162197b48c8fSBarry Smith if (x && b) { 162265a92638SMatthew G. Knepley const PetscScalar *xx; 162365a92638SMatthew G. Knepley PetscScalar *bb; 162465a92638SMatthew G. Knepley 16259566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 16269566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 162765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 16289566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 16299566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 163097b48c8fSBarry Smith } 163197b48c8fSBarry Smith 16320ac07820SSatish Balay /* actually zap the local rows */ 163372dacd9aSBarry Smith /* 163472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1635a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 163672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 163772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 163872dacd9aSBarry Smith 163972dacd9aSBarry Smith */ 16409c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16419566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16429566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 164394342113SStefano Zampini if ((diag != 0.0) && cong) { 16449566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1645f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16469566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 16475f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1648512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 164965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 165065a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16519566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1652a07cd24cSSatish Balay } 16539566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16549566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16559c957beeSSatish Balay } else { 16569566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1657a07cd24cSSatish Balay } 16589566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16594f9cfa9eSBarry Smith 16604f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16614f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 1662e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16631c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1664e56f5c9eSBarry Smith } 16653ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 16660ac07820SSatish Balay } 166772dacd9aSBarry Smith 1668d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) 1669d71ae5a4SJacob Faibussowitsch { 16706f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1671131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1672131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16736f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16746f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16756f0a72daSMatthew G. Knepley PetscSF sf; 16766f0a72daSMatthew G. Knepley const PetscScalar *xx; 16776f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16786f0a72daSMatthew G. Knepley Vec xmask, lmask; 16796f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16806f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16816f0a72daSMatthew G. Knepley PetscScalar *aa; 16826f0a72daSMatthew G. Knepley 16836f0a72daSMatthew G. Knepley PetscFunctionBegin; 16846f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16866f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16879566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16886f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16896f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16905f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16915ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16929566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16935ba17502SJed Brown } 16946f0a72daSMatthew G. Knepley rrows[r].rank = p; 16956f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16966f0a72daSMatthew G. Knepley } 16979566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16989566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16996f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 17009566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17019566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 17029566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 17036f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 17049371c9d4SSatish Balay for (r = 0; r < n; ++r) 17059371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 17066f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 17079566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 17086f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 17099566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 17109566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 17119566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 17126f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 17139566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 17149566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17159566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 17169566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 17176f0a72daSMatthew G. Knepley if (x) { 17189566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17199566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 17209566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 17219566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 17226f0a72daSMatthew G. Knepley } 17239566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 17246f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 17256f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 17266f0a72daSMatthew G. Knepley row = lrows[i]; 17276f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 17286f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs); 17296f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 17306f0a72daSMatthew G. Knepley aa[0] = 0.0; 17316f0a72daSMatthew G. Knepley aa += bs; 17326f0a72daSMatthew G. Knepley } 17336f0a72daSMatthew G. Knepley } 17346f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 17356f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 17366f0a72daSMatthew G. Knepley row = i / bs; 17376f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 17386f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 17396f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 17406f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17416f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k; 174289ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17436f0a72daSMatthew G. Knepley aa[0] = 0.0; 17446f0a72daSMatthew G. Knepley } 17456f0a72daSMatthew G. Knepley } 17466f0a72daSMatthew G. Knepley } 17476f0a72daSMatthew G. Knepley } 17486f0a72daSMatthew G. Knepley if (x) { 17499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17509566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17516f0a72daSMatthew G. Knepley } 17529566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17549566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17554f9cfa9eSBarry Smith 17564f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17574f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 17584f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17591c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17604f9cfa9eSBarry Smith } 17613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17626f0a72daSMatthew G. Knepley } 17636f0a72daSMatthew G. Knepley 1764d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1765d71ae5a4SJacob Faibussowitsch { 1766bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1767d64ed03dSBarry Smith 1768d64ed03dSBarry Smith PetscFunctionBegin; 17699566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1771bb5a7306SBarry Smith } 1772bb5a7306SBarry Smith 17736849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17740ac07820SSatish Balay 1775d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) 1776d71ae5a4SJacob Faibussowitsch { 17777fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17787fc3c18eSBarry Smith Mat a, b, c, d; 1779ace3abfcSBarry Smith PetscBool flg; 17807fc3c18eSBarry Smith 17817fc3c18eSBarry Smith PetscFunctionBegin; 17829371c9d4SSatish Balay a = matA->A; 17839371c9d4SSatish Balay b = matA->B; 17849371c9d4SSatish Balay c = matB->A; 17859371c9d4SSatish Balay d = matB->B; 17867fc3c18eSBarry Smith 17879566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 178848a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17891c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 17917fc3c18eSBarry Smith } 17927fc3c18eSBarry Smith 1793d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) 1794d71ae5a4SJacob Faibussowitsch { 17953c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17963c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17973c896bc6SHong Zhang 17983c896bc6SHong Zhang PetscFunctionBegin; 17993c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18003c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18019566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 18023c896bc6SHong Zhang } else { 18039566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 18049566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 18053c896bc6SHong Zhang } 18069566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 18073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18083c896bc6SHong Zhang } 1809273d9f13SBarry Smith 1810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) 1811d71ae5a4SJacob Faibussowitsch { 1812001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 18134de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 18144de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 18154de5dceeSHong Zhang 18164de5dceeSHong Zhang PetscFunctionBegin; 18179566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 18183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18194de5dceeSHong Zhang } 18204de5dceeSHong Zhang 1821d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) 1822d71ae5a4SJacob Faibussowitsch { 18234fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 18244fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 18254fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1826b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 18274fe895cdSHong Zhang 18284fe895cdSHong Zhang PetscFunctionBegin; 18294fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 18304fe895cdSHong Zhang PetscScalar alpha = a; 18314fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 18324fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 18339566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1834792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18354fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 18364fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 18379566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1838792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 18399566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1840ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18419566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18424fe895cdSHong Zhang } else { 18434de5dceeSHong Zhang Mat B; 18444de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18479566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18489566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18509566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18519566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18529566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18539566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18549566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18554de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18569566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18579566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18589566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18599566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18604fe895cdSHong Zhang } 18613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18624fe895cdSHong Zhang } 18634fe895cdSHong Zhang 1864d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) 1865d71ae5a4SJacob Faibussowitsch { 18665f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18675f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18682726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18692726fb6dSPierre Jolivet 18709566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18719566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18725f80ce2aSJacob Faibussowitsch } 18733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 18742726fb6dSPierre Jolivet } 18752726fb6dSPierre Jolivet 1876d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 1877d71ae5a4SJacob Faibussowitsch { 187899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 187999cafbc1SBarry Smith 188099cafbc1SBarry Smith PetscFunctionBegin; 18819566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18829566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 18833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 188499cafbc1SBarry Smith } 188599cafbc1SBarry Smith 1886d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 1887d71ae5a4SJacob Faibussowitsch { 188899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 188999cafbc1SBarry Smith 189099cafbc1SBarry Smith PetscFunctionBegin; 18919566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18929566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 18933ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 189499cafbc1SBarry Smith } 189599cafbc1SBarry Smith 1896d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) 1897d71ae5a4SJacob Faibussowitsch { 18984aa3045dSJed Brown IS iscol_local; 18994aa3045dSJed Brown PetscInt csize; 19004aa3045dSJed Brown 19014aa3045dSJed Brown PetscFunctionBegin; 19029566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1903b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 19049566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 19055f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1906b79d0421SJed Brown } else { 19079566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1908b79d0421SJed Brown } 19099566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 1910b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 19119566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 19129566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1913b79d0421SJed Brown } 19143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19154aa3045dSJed Brown } 191617df9f7cSHong Zhang 191782094794SBarry Smith /* 191882094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 191982094794SBarry Smith in local and then by concatenating the local matrices the end result. 19207dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 19218f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 192282094794SBarry Smith */ 1923d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) 1924d71ae5a4SJacob Faibussowitsch { 192582094794SBarry Smith PetscMPIInt rank, size; 192682094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1927c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 192829dcf524SDmitry Karpeev Mat M, Mreuse; 192982094794SBarry Smith MatScalar *vwork, *aa; 1930ce94432eSBarry Smith MPI_Comm comm; 193129dcf524SDmitry Karpeev IS isrow_new, iscol_new; 193282094794SBarry Smith Mat_SeqBAIJ *aij; 193382094794SBarry Smith 193482094794SBarry Smith PetscFunctionBegin; 19359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 19369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 19379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 193829dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 193929dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 19409566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 19419566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 194282094794SBarry Smith 194382094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 19449566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19455f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 19469566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse)); 194782094794SBarry Smith } else { 19489566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse)); 194982094794SBarry Smith } 19509566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19519566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 195282094794SBarry Smith /* 195382094794SBarry Smith m - number of local rows 195482094794SBarry Smith n - number of columns (same on all processors) 195582094794SBarry Smith rstart - first row in new global matrix generated 195682094794SBarry Smith */ 19579566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19589566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 195982094794SBarry Smith m = m / bs; 196082094794SBarry Smith n = n / bs; 196182094794SBarry Smith 196282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 196382094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 196482094794SBarry Smith ii = aij->i; 196582094794SBarry Smith jj = aij->j; 196682094794SBarry Smith 196782094794SBarry Smith /* 196882094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 196982094794SBarry Smith portions of the matrix in order to do correct preallocation 197082094794SBarry Smith */ 197182094794SBarry Smith 197282094794SBarry Smith /* first get start and end of "diagonal" columns */ 197382094794SBarry Smith if (csize == PETSC_DECIDE) { 19749566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 197582094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 197682094794SBarry Smith nlocal = m; 197782094794SBarry Smith } else { 197882094794SBarry Smith nlocal = n / size + ((n % size) > rank); 197982094794SBarry Smith } 198082094794SBarry Smith } else { 198182094794SBarry Smith nlocal = csize / bs; 198282094794SBarry Smith } 19839566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 198482094794SBarry Smith rstart = rend - nlocal; 1985aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 198682094794SBarry Smith 198782094794SBarry Smith /* next, compute all the lengths */ 19889566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 198982094794SBarry Smith for (i = 0; i < m; i++) { 199082094794SBarry Smith jend = ii[i + 1] - ii[i]; 199182094794SBarry Smith olen = 0; 199282094794SBarry Smith dlen = 0; 199382094794SBarry Smith for (j = 0; j < jend; j++) { 199482094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 199582094794SBarry Smith else dlen++; 199682094794SBarry Smith jj++; 199782094794SBarry Smith } 199882094794SBarry Smith olens[i] = olen; 199982094794SBarry Smith dlens[i] = dlen; 200082094794SBarry Smith } 20019566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 20029566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 20039566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 20049566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20059566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 20069566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 200782094794SBarry Smith } else { 200882094794SBarry Smith PetscInt ml, nl; 200982094794SBarry Smith 201082094794SBarry Smith M = *newmat; 20119566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 20125f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 20139566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 201482094794SBarry Smith /* 201582094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 201682094794SBarry Smith rather than the slower MatSetValues(). 201782094794SBarry Smith */ 201882094794SBarry Smith M->was_assembled = PETSC_TRUE; 201982094794SBarry Smith M->assembled = PETSC_FALSE; 202082094794SBarry Smith } 20219566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 20229566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 202382094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 202482094794SBarry Smith ii = aij->i; 202582094794SBarry Smith jj = aij->j; 202682094794SBarry Smith aa = aij->a; 202782094794SBarry Smith for (i = 0; i < m; i++) { 202882094794SBarry Smith row = rstart / bs + i; 202982094794SBarry Smith nz = ii[i + 1] - ii[i]; 20309371c9d4SSatish Balay cwork = jj; 20319371c9d4SSatish Balay jj += nz; 20329371c9d4SSatish Balay vwork = aa; 20339371c9d4SSatish Balay aa += nz * bs * bs; 20349566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 203582094794SBarry Smith } 203682094794SBarry Smith 20379566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 20389566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 203982094794SBarry Smith *newmat = M; 204082094794SBarry Smith 204182094794SBarry Smith /* save submatrix used in processor for next request */ 204282094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 20439566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 20449566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 204582094794SBarry Smith } 20463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 204782094794SBarry Smith } 204882094794SBarry Smith 2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) 2050d71ae5a4SJacob Faibussowitsch { 205182094794SBarry Smith MPI_Comm comm, pcomm; 2052a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 205382094794SBarry Smith const PetscInt *rows; 2054dbf0e21dSBarry Smith PetscMPIInt size; 2055a0a83eb5SRémi Lacroix IS crowp, lcolp; 205682094794SBarry Smith 205782094794SBarry Smith PetscFunctionBegin; 20589566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 205982094794SBarry Smith /* make a collective version of 'rowp' */ 20609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 206182094794SBarry Smith if (pcomm == comm) { 206282094794SBarry Smith crowp = rowp; 206382094794SBarry Smith } else { 20649566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20659566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20669566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20679566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 206882094794SBarry Smith } 20699566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2070a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2073dbf0e21dSBarry Smith if (size == 1) { 207482094794SBarry Smith lcolp = colp; 207582094794SBarry Smith } else { 20769566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 207782094794SBarry Smith } 20789566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 207975f6568bSJed Brown /* now we just get the submatrix */ 20809566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 20819566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B)); 2082a0a83eb5SRémi Lacroix /* clean up */ 208348a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 208448a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 20853ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 208682094794SBarry Smith } 208782094794SBarry Smith 2088d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) 2089d71ae5a4SJacob Faibussowitsch { 20908c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20918c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20928c7482ecSBarry Smith 20938c7482ecSBarry Smith PetscFunctionBegin; 209426fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 209526fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 20978c7482ecSBarry Smith } 20988c7482ecSBarry Smith 2099d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) 2100d71ae5a4SJacob Faibussowitsch { 2101f6d58c54SBarry Smith Mat B; 2102f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2103f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2104f6d58c54SBarry Smith Mat_SeqAIJ *b; 2105f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2106f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2107f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2108f6d58c54SBarry Smith 2109f6d58c54SBarry Smith PetscFunctionBegin; 21109566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 21119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2112f6d58c54SBarry Smith 2113f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2114f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2115f6d58c54SBarry Smith */ 21169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 2117ad540459SPierre Jolivet for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; 21189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2119f6d58c54SBarry Smith displs = recvcounts + size; 2120f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2121f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2122f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2123f6d58c54SBarry Smith } 21249566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 2125f6d58c54SBarry Smith /* --------------------------------------------------------------- 2126f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2127f6d58c54SBarry Smith */ 21289566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 21299566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 21309566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 21319566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2132f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2133f6d58c54SBarry Smith 2134f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2135f6d58c54SBarry Smith Copy my part of matrix column indices over 2136f6d58c54SBarry Smith */ 2137f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2138f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2139f6d58c54SBarry Smith a_jsendbuf = ad->j; 2140f6d58c54SBarry Smith b_jsendbuf = bd->j; 2141f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2142f6d58c54SBarry Smith cnt = 0; 2143f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2144f6d58c54SBarry Smith /* put in lower diagonal portion */ 2145f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2146f6d58c54SBarry Smith while (m > 0) { 2147f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2148f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2149f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2150f6d58c54SBarry Smith m--; 2151f6d58c54SBarry Smith } 2152f6d58c54SBarry Smith 2153f6d58c54SBarry Smith /* put in diagonal portion */ 2154ad540459SPierre Jolivet for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; 2155f6d58c54SBarry Smith 2156f6d58c54SBarry Smith /* put in upper diagonal portion */ 2157ad540459SPierre Jolivet while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2158f6d58c54SBarry Smith } 21595f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2160f6d58c54SBarry Smith 2161f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2162f6d58c54SBarry Smith Gather all column indices to all processors 2163f6d58c54SBarry Smith */ 2164f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2165f6d58c54SBarry Smith recvcounts[i] = 0; 2166ad540459SPierre Jolivet for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j]; 2167f6d58c54SBarry Smith } 2168f6d58c54SBarry Smith displs[0] = 0; 2169ad540459SPierre Jolivet for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1]; 21709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 2171f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2172f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2173f6d58c54SBarry Smith */ 2174f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21759566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2176f6d58c54SBarry Smith /* set the b->i indices */ 2177f6d58c54SBarry Smith b->i[0] = 0; 2178ad540459SPierre Jolivet for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1]; 21799566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21809566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21819566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21829566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2183f6d58c54SBarry Smith 2184b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2185f6d58c54SBarry Smith *newmat = B; 21863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2187f6d58c54SBarry Smith } 2188f6d58c54SBarry Smith 2189d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) 2190d71ae5a4SJacob Faibussowitsch { 2191b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2192f4259b30SLisandro Dalcin Vec bb1 = NULL; 2193b1a666ecSBarry Smith 2194b1a666ecSBarry Smith PetscFunctionBegin; 2195b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21969566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 21973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2198b1a666ecSBarry Smith } 2199b1a666ecSBarry Smith 220048a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 22014e980039SJed Brown 2202b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2203b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22049566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2205b1a666ecSBarry Smith its--; 2206b1a666ecSBarry Smith } 2207b1a666ecSBarry Smith 2208b1a666ecSBarry Smith while (its--) { 22099566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22109566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2211b1a666ecSBarry Smith 2212b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22139566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22149566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2215b1a666ecSBarry Smith 2216b1a666ecSBarry Smith /* local sweep */ 22179566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2218b1a666ecSBarry Smith } 2219b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2220b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22219566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2222b1a666ecSBarry Smith its--; 2223b1a666ecSBarry Smith } 2224b1a666ecSBarry Smith while (its--) { 22259566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22269566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2227b1a666ecSBarry Smith 2228b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22299566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22309566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2231b1a666ecSBarry Smith 2232b1a666ecSBarry Smith /* local sweep */ 22339566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2234b1a666ecSBarry Smith } 2235b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2236b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 22379566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2238b1a666ecSBarry Smith its--; 2239b1a666ecSBarry Smith } 2240b1a666ecSBarry Smith while (its--) { 22419566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 22429566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2243b1a666ecSBarry Smith 2244b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 22459566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 22469566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2247b1a666ecSBarry Smith 2248b1a666ecSBarry Smith /* local sweep */ 22499566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2250b1a666ecSBarry Smith } 2251ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2252b1a666ecSBarry Smith 22539566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 22543ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2255b1a666ecSBarry Smith } 2256b1a666ecSBarry Smith 2257d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) 2258d71ae5a4SJacob Faibussowitsch { 225947f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2260a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 226147f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 226247f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 226347f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 226447f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 226547f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 226647f7623dSRémi Lacroix PetscReal *work; 226747f7623dSRémi Lacroix 226847f7623dSRémi Lacroix PetscFunctionBegin; 22699566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22709566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2271857cbf51SRichard Tran Mills if (type == NORM_2) { 227247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 227347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 227447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 227547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 227647f7623dSRémi Lacroix a_val++; 227747f7623dSRémi Lacroix } 227847f7623dSRémi Lacroix } 227947f7623dSRémi Lacroix } 228047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 228147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 228247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 228347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 228447f7623dSRémi Lacroix b_val++; 228547f7623dSRémi Lacroix } 228647f7623dSRémi Lacroix } 228747f7623dSRémi Lacroix } 2288857cbf51SRichard Tran Mills } else if (type == NORM_1) { 228947f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 229047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 229247f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 229347f7623dSRémi Lacroix a_val++; 229447f7623dSRémi Lacroix } 229547f7623dSRémi Lacroix } 229647f7623dSRémi Lacroix } 229747f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 229847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 229947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230047f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 230147f7623dSRémi Lacroix b_val++; 230247f7623dSRémi Lacroix } 230347f7623dSRémi Lacroix } 230447f7623dSRémi Lacroix } 2305857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 230647f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 230747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 230847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 230947f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 231047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 231147f7623dSRémi Lacroix a_val++; 231247f7623dSRémi Lacroix } 231347f7623dSRémi Lacroix } 231447f7623dSRémi Lacroix } 231547f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 231647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 231747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 231847f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 231947f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 232047f7623dSRémi Lacroix b_val++; 232147f7623dSRémi Lacroix } 232247f7623dSRémi Lacroix } 232347f7623dSRémi Lacroix } 2324857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2325a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2326a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2327a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2328857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2329a873a8cdSSam Reynolds a_val++; 2330a873a8cdSSam Reynolds } 2331a873a8cdSSam Reynolds } 2332a873a8cdSSam Reynolds } 2333a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2334a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2335a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2336857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2337a873a8cdSSam Reynolds b_val++; 2338a873a8cdSSam Reynolds } 2339a873a8cdSSam Reynolds } 2340a873a8cdSSam Reynolds } 2341857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2342857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2343857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2344857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2345857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2346857cbf51SRichard Tran Mills a_val++; 2347857cbf51SRichard Tran Mills } 2348857cbf51SRichard Tran Mills } 2349857cbf51SRichard Tran Mills } 2350857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2351857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2352857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2353857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2354857cbf51SRichard Tran Mills b_val++; 2355857cbf51SRichard Tran Mills } 2356857cbf51SRichard Tran Mills } 2357857cbf51SRichard Tran Mills } 2358857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2359857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23601c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 236147f7623dSRémi Lacroix } else { 23621c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 236347f7623dSRémi Lacroix } 23649566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2365857cbf51SRichard Tran Mills if (type == NORM_2) { 2366a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2367857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2368a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 236947f7623dSRémi Lacroix } 23703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 237147f7623dSRémi Lacroix } 237247f7623dSRémi Lacroix 2373d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) 2374d71ae5a4SJacob Faibussowitsch { 2375bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2376bbead8a2SBarry Smith 2377bbead8a2SBarry Smith PetscFunctionBegin; 23789566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23797b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23807b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23817b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 23823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2383bbead8a2SBarry Smith } 2384bbead8a2SBarry Smith 2385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) 2386d71ae5a4SJacob Faibussowitsch { 23877d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23886f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23897d68702bSBarry Smith 23907d68702bSBarry Smith PetscFunctionBegin; 23916f33a894SBarry Smith if (!Y->preallocated) { 23929566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23936f33a894SBarry Smith } else if (!aij->nz) { 2394b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23959566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2396b83222d8SBarry Smith aij->nonew = nonew; 23977d68702bSBarry Smith } 23989566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24007d68702bSBarry Smith } 24018c7482ecSBarry Smith 2402d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) 2403d71ae5a4SJacob Faibussowitsch { 24043b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 24053b49f96aSBarry Smith 24063b49f96aSBarry Smith PetscFunctionBegin; 24075f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 24089566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 24093b49f96aSBarry Smith if (d) { 24103b49f96aSBarry Smith PetscInt rstart; 24119566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 24123b49f96aSBarry Smith *d += rstart / A->rmap->bs; 24133b49f96aSBarry Smith } 24143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24153b49f96aSBarry Smith } 24163b49f96aSBarry Smith 2417d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) 2418d71ae5a4SJacob Faibussowitsch { 2419a5b7ff6bSBarry Smith PetscFunctionBegin; 2420a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 24213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2422a5b7ff6bSBarry Smith } 2423a5b7ff6bSBarry Smith 242479bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 24253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2426cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2427cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2428cc2dc46cSBarry Smith MatMult_MPIBAIJ, 242997304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 24307c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 24317c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2432f4259b30SLisandro Dalcin NULL, 2433f4259b30SLisandro Dalcin NULL, 2434f4259b30SLisandro Dalcin NULL, 2435f4259b30SLisandro Dalcin /*10*/ NULL, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin NULL, 2438b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2439cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 244097304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 24417fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2442cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2443cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2444cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 244597304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2446cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2447cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2448cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2449d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2450f4259b30SLisandro Dalcin NULL, 2451f4259b30SLisandro Dalcin NULL, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 2454*26cec326SBarry Smith /*29*/ MatSetUp_MPI_Hash, 2455f4259b30SLisandro Dalcin NULL, 2456f4259b30SLisandro Dalcin NULL, 2457a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2458f4259b30SLisandro Dalcin NULL, 2459d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2460f4259b30SLisandro Dalcin NULL, 2461f4259b30SLisandro Dalcin NULL, 2462f4259b30SLisandro Dalcin NULL, 2463f4259b30SLisandro Dalcin NULL, 2464d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24657dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2466cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2467cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24683c896bc6SHong Zhang MatCopy_MPIBAIJ, 2469f4259b30SLisandro Dalcin /*44*/ NULL, 2470cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24717d68702bSBarry Smith MatShift_MPIBAIJ, 2472f4259b30SLisandro Dalcin NULL, 24736f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2474f4259b30SLisandro Dalcin /*49*/ NULL, 2475f4259b30SLisandro Dalcin NULL, 2476f4259b30SLisandro Dalcin NULL, 2477f4259b30SLisandro Dalcin NULL, 2478f4259b30SLisandro Dalcin NULL, 247993dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2480f4259b30SLisandro Dalcin NULL, 2481cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 248282094794SBarry Smith MatPermute_MPIBAIJ, 2483cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24847dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2485f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2486f14a1c24SBarry Smith MatView_MPIBAIJ, 2487f4259b30SLisandro Dalcin NULL, 2488f4259b30SLisandro Dalcin NULL, 2489f4259b30SLisandro Dalcin /*64*/ NULL, 2490f4259b30SLisandro Dalcin NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2495f4259b30SLisandro Dalcin NULL, 2496f4259b30SLisandro Dalcin NULL, 2497f4259b30SLisandro Dalcin NULL, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin /*74*/ NULL, 2500f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin /*79*/ NULL, 2505f4259b30SLisandro Dalcin NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 25085bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2509f4259b30SLisandro Dalcin /*84*/ NULL, 2510f4259b30SLisandro Dalcin NULL, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin NULL, 2513f4259b30SLisandro Dalcin NULL, 2514f4259b30SLisandro Dalcin /*89*/ NULL, 2515f4259b30SLisandro Dalcin NULL, 2516f4259b30SLisandro Dalcin NULL, 2517f4259b30SLisandro Dalcin NULL, 2518f4259b30SLisandro Dalcin NULL, 2519f4259b30SLisandro Dalcin /*94*/ NULL, 2520f4259b30SLisandro Dalcin NULL, 2521f4259b30SLisandro Dalcin NULL, 2522f4259b30SLisandro Dalcin NULL, 2523f4259b30SLisandro Dalcin NULL, 2524f4259b30SLisandro Dalcin /*99*/ NULL, 2525f4259b30SLisandro Dalcin NULL, 2526f4259b30SLisandro Dalcin NULL, 25272726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2528f4259b30SLisandro Dalcin NULL, 2529f4259b30SLisandro Dalcin /*104*/ NULL, 253099cafbc1SBarry Smith MatRealPart_MPIBAIJ, 25318c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2532f4259b30SLisandro Dalcin NULL, 2533f4259b30SLisandro Dalcin NULL, 2534f4259b30SLisandro Dalcin /*109*/ NULL, 2535f4259b30SLisandro Dalcin NULL, 2536f4259b30SLisandro Dalcin NULL, 2537f4259b30SLisandro Dalcin NULL, 25383b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2539d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2540f4259b30SLisandro Dalcin NULL, 25414683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2542f4259b30SLisandro Dalcin NULL, 2543f4259b30SLisandro Dalcin NULL, 2544f4259b30SLisandro Dalcin /*119*/ NULL, 2545f4259b30SLisandro Dalcin NULL, 2546f4259b30SLisandro Dalcin NULL, 2547f4259b30SLisandro Dalcin NULL, 2548e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2549f4259b30SLisandro Dalcin /*124*/ NULL, 2550a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 25513964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2552f4259b30SLisandro Dalcin NULL, 2553f4259b30SLisandro Dalcin NULL, 2554f4259b30SLisandro Dalcin /*129*/ NULL, 2555f4259b30SLisandro Dalcin NULL, 2556f4259b30SLisandro Dalcin NULL, 2557f4259b30SLisandro Dalcin NULL, 2558f4259b30SLisandro Dalcin NULL, 2559f4259b30SLisandro Dalcin /*134*/ NULL, 2560f4259b30SLisandro Dalcin NULL, 2561f4259b30SLisandro Dalcin NULL, 2562f4259b30SLisandro Dalcin NULL, 2563f4259b30SLisandro Dalcin NULL, 256446533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2565f4259b30SLisandro Dalcin NULL, 2566f4259b30SLisandro Dalcin NULL, 2567bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2568f4259b30SLisandro Dalcin NULL, 2569d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2570d70f29a3SPierre Jolivet NULL, 2571d70f29a3SPierre Jolivet NULL, 257299a7f59eSMark Adams NULL, 257399a7f59eSMark Adams NULL, 25747fb60732SBarry Smith NULL, 2575dec0b466SHong Zhang /*150*/ NULL, 2576dec0b466SHong Zhang NULL}; 257779bdfe76SSatish Balay 2578cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2579c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2580d94109b8SHong Zhang 2581d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) 2582d71ae5a4SJacob Faibussowitsch { 2583b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2584f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2585f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2586f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2587d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25883bd0feecSPierre Jolivet PetscBool nooffprocentries; 2589aac34f13SBarry Smith 2590aac34f13SBarry Smith PetscFunctionBegin; 25919566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25929566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25959566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2596d0f46423SBarry Smith m = B->rmap->n / bs; 2597d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2598d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2599d0f46423SBarry Smith cend = B->cmap->rend / bs; 2600b8d659d7SLisandro Dalcin 26015f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 26029566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2603aac34f13SBarry Smith for (i = 0; i < m; i++) { 2604cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 26055f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2606b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 260737cd3c0dSBarry Smith dlen = 0; 260837cd3c0dSBarry Smith olen = 0; 2609cf12db73SBarry Smith JJ = jj + ii[i]; 2610b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 261137cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 261237cd3c0dSBarry Smith else dlen++; 2613aac34f13SBarry Smith JJ++; 2614aac34f13SBarry Smith } 261537cd3c0dSBarry Smith d_nnz[i] = dlen; 261637cd3c0dSBarry Smith o_nnz[i] = olen; 2617aac34f13SBarry Smith } 26189566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 26199566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2620aac34f13SBarry Smith 2621b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 262248a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2623b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2624b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2625cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2626cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2627bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2628cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 26299566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 26303adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 26313adadaf3SJed Brown PetscInt j; 26323adadaf3SJed Brown for (j = 0; j < ncols; j++) { 26333adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 26349566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 26353adadaf3SJed Brown } 26363adadaf3SJed Brown } 2637aac34f13SBarry Smith } 2638aac34f13SBarry Smith 26399566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 26403bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 26413bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 26429566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 26439566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 26443bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 26453bd0feecSPierre Jolivet 26469566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 26473ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2648aac34f13SBarry Smith } 2649aac34f13SBarry Smith 2650aac34f13SBarry Smith /*@C 265111a5261eSBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values 2652aac34f13SBarry Smith 2653d083f849SBarry Smith Collective 2654aac34f13SBarry Smith 2655aac34f13SBarry Smith Input Parameters: 26561c4f3114SJed Brown + B - the matrix 2657dfb205c3SBarry Smith . bs - the block size 2658aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2659aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2660aac34f13SBarry Smith - v - optional values in the matrix 2661aac34f13SBarry Smith 2662664954b6SBarry Smith Level: advanced 2663aac34f13SBarry Smith 266495452b02SPatrick Sanan Notes: 266511a5261eSBarry Smith The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`. For example, C programs 266611a5261eSBarry Smith may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is 26673adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 266811a5261eSBarry Smith `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26693adadaf3SJed Brown block column and the second index is over columns within a block. 26703adadaf3SJed Brown 2671664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2672664954b6SBarry Smith 267367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2674aac34f13SBarry Smith @*/ 2675d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) 2676d71ae5a4SJacob Faibussowitsch { 2677aac34f13SBarry Smith PetscFunctionBegin; 26786ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26796ba663aaSJed Brown PetscValidType(B, 1); 26806ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2681cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 26823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2683aac34f13SBarry Smith } 2684aac34f13SBarry Smith 2685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) 2686d71ae5a4SJacob Faibussowitsch { 2687a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2688535b19f3SBarry Smith PetscInt i; 26895d2a9ed1SStefano Zampini PetscMPIInt size; 2690a23d5eceSKris Buschelman 2691a23d5eceSKris Buschelman PetscFunctionBegin; 26929566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 26939566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26949566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26959566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2696899cda47SBarry Smith 2697a23d5eceSKris Buschelman if (d_nnz) { 2698ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); 2699a23d5eceSKris Buschelman } 2700a23d5eceSKris Buschelman if (o_nnz) { 2701ad540459SPierre Jolivet for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); 2702a23d5eceSKris Buschelman } 2703a23d5eceSKris Buschelman 2704a23d5eceSKris Buschelman b = (Mat_MPIBAIJ *)B->data; 2705a23d5eceSKris Buschelman b->bs2 = bs * bs; 2706d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2707d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2708d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2709d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2710a23d5eceSKris Buschelman 2711ad540459SPierre Jolivet for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs; 2712d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2713d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2714d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2715d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2716a23d5eceSKris Buschelman 2717cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 2718eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&b->colmap)); 2719cb7b82ddSBarry Smith #else 27209566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2721cb7b82ddSBarry Smith #endif 27229566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 27239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 27249566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2725cb7b82ddSBarry Smith 2726cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 27279566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 27289566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27299566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 27309566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 27319566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 2732cb7b82ddSBarry Smith 2733526dfc15SBarry Smith if (!B->preallocated) { 27349566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 27359566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 27369566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 27379566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 2738526dfc15SBarry Smith } 2739a23d5eceSKris Buschelman 27409566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 27419566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2742526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2743cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2744cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 27453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2746a23d5eceSKris Buschelman } 2747a23d5eceSKris Buschelman 27487087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 27497087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 27505bf65638SKris Buschelman 2751d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) 2752d71ae5a4SJacob Faibussowitsch { 275382094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 275482094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 275582094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 275682094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 275782094794SBarry Smith 275882094794SBarry Smith PetscFunctionBegin; 27599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 276082094794SBarry Smith ii[0] = 0; 276182094794SBarry Smith for (i = 0; i < M; i++) { 276208401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 276308401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 276482094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27655ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27665ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27679371c9d4SSatish Balay if (jd[j] == i) { 27689371c9d4SSatish Balay ii[i + 1]--; 27699371c9d4SSatish Balay break; 27709371c9d4SSatish Balay } 27715ee9ba1cSJed Brown } 277282094794SBarry Smith } 27739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 277482094794SBarry Smith cnt = 0; 277582094794SBarry Smith for (i = 0; i < M; i++) { 277682094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 277782094794SBarry Smith if (garray[jo[j]] > rstart) break; 277882094794SBarry Smith jj[cnt++] = garray[jo[j]]; 277982094794SBarry Smith } 278082094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 2781ad540459SPierre Jolivet if (jd[k] != i) jj[cnt++] = rstart + jd[k]; 278282094794SBarry Smith } 2783ad540459SPierre Jolivet for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]]; 278482094794SBarry Smith } 27859566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 27863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 278782094794SBarry Smith } 278882094794SBarry Smith 2789c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 279062471d69SBarry Smith 2791cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2792b2573a8aSBarry Smith 2793d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) 2794d71ae5a4SJacob Faibussowitsch { 279562471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 279685a69837SSatish Balay Mat_MPIAIJ *b; 27975f80ce2aSJacob Faibussowitsch Mat B; 279862471d69SBarry Smith 279962471d69SBarry Smith PetscFunctionBegin; 28005f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 280162471d69SBarry Smith 28020f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28030f6d62edSLisandro Dalcin B = *newmat; 28040f6d62edSLisandro Dalcin } else { 28059566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 28069566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 28079566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 28089566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 28099566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 28109566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 28110f6d62edSLisandro Dalcin } 281262471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 281362471d69SBarry Smith 28140f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 28159566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 28169566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 28170f6d62edSLisandro Dalcin } else { 2818539ef8ebSBarry Smith PetscBool3 sym = A->symmetric, hermitian = A->hermitian, structurally_symmetric = A->structurally_symmetric, spd = A->spd; 28199566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 28209566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 28219566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(A)); 28229566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 28239566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 28249566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 28259566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 2826539ef8ebSBarry Smith A->symmetric = sym; 2827539ef8ebSBarry Smith A->hermitian = hermitian; 2828539ef8ebSBarry Smith A->structurally_symmetric = structurally_symmetric; 2829539ef8ebSBarry Smith A->spd = spd; 28300f6d62edSLisandro Dalcin } 28319566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 28329566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 28330f6d62edSLisandro Dalcin 2834511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 28359566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 283662471d69SBarry Smith } else { 283762471d69SBarry Smith *newmat = B; 283862471d69SBarry Smith } 28393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 284062471d69SBarry Smith } 284162471d69SBarry Smith 28420bad9183SKris Buschelman /*MC 2843fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 28440bad9183SKris Buschelman 28450bad9183SKris Buschelman Options Database Keys: 284611a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()` 28478c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 28486679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 284967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 28500bad9183SKris Buschelman 28510bad9183SKris Buschelman Level: beginner 28520cd7f59aSBarry Smith 285311a5261eSBarry Smith Note: 285411a5261eSBarry Smith `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no 285511a5261eSBarry Smith space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored 28560bad9183SKris Buschelman 285767be906fSBarry Smith .seealso: `Mat`, MATBAIJ`, MATSEQBAIJ`, `MatCreateBAIJ` 28580bad9183SKris Buschelman M*/ 28590bad9183SKris Buschelman 2860cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2861c0cdd4a1SDahai Guo 2862d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 2863d71ae5a4SJacob Faibussowitsch { 2864273d9f13SBarry Smith Mat_MPIBAIJ *b; 286594ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2866273d9f13SBarry Smith 2867273d9f13SBarry Smith PetscFunctionBegin; 28684dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&b)); 286982502324SSatish Balay B->data = (void *)b; 287082502324SSatish Balay 28719566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 2872273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2873273d9f13SBarry Smith 2874273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2877273d9f13SBarry Smith 2878273d9f13SBarry Smith /* build local table of row and column ownerships */ 28799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2880273d9f13SBarry Smith 2881273d9f13SBarry Smith /* build cache for off array entries formed */ 28829566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 288326fbe8dcSKarl Rupp 2884273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28850298fd71SBarry Smith b->colmap = NULL; 28860298fd71SBarry Smith b->garray = NULL; 2887273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2888273d9f13SBarry Smith 2889273d9f13SBarry Smith /* stuff used in block assembly */ 2890f4259b30SLisandro Dalcin b->barray = NULL; 2891273d9f13SBarry Smith 2892273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2893f4259b30SLisandro Dalcin b->lvec = NULL; 2894f4259b30SLisandro Dalcin b->Mvctx = NULL; 2895273d9f13SBarry Smith 2896273d9f13SBarry Smith /* stuff for MatGetRow() */ 2897f4259b30SLisandro Dalcin b->rowindices = NULL; 2898f4259b30SLisandro Dalcin b->rowvalues = NULL; 2899273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith /* hash table stuff */ 2902f4259b30SLisandro Dalcin b->ht = NULL; 2903f4259b30SLisandro Dalcin b->hd = NULL; 2904273d9f13SBarry Smith b->ht_size = 0; 2905273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2906273d9f13SBarry Smith b->ht_fact = 0; 2907273d9f13SBarry Smith b->ht_total_ct = 0; 2908273d9f13SBarry Smith b->ht_insert_ct = 0; 2909273d9f13SBarry Smith 29107dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 29117a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 29127a868f3eSHong Zhang 29139566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 29149566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 29159566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 29167ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 29179566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 29187ea3e4caSstefano_zampini #endif 29199566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 29209566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 29219566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 29229566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 29239566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 29249566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 29259566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 29269566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 292794ae4db5SBarry Smith 2928d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 29299566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 293094ae4db5SBarry Smith if (flg) { 293194ae4db5SBarry Smith PetscReal fact = 1.39; 29329566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 29339566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 293494ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 29359566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 29369566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 293794ae4db5SBarry Smith } 2938d0609cedSBarry Smith PetscOptionsEnd(); 29393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2940273d9f13SBarry Smith } 2941273d9f13SBarry Smith 2942209238afSKris Buschelman /*MC 2943002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2944209238afSKris Buschelman 294511a5261eSBarry Smith This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator, 294611a5261eSBarry Smith and `MATMPIBAIJ` otherwise. 2947209238afSKris Buschelman 2948209238afSKris Buschelman Options Database Keys: 294911a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()` 2950209238afSKris Buschelman 2951209238afSKris Buschelman Level: beginner 2952209238afSKris Buschelman 295367be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2954209238afSKris Buschelman M*/ 2955209238afSKris Buschelman 2956273d9f13SBarry Smith /*@C 295711a5261eSBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format 295867be906fSBarry Smith (block compressed row). 2959273d9f13SBarry Smith 2960c3339decSBarry Smith Collective 2961273d9f13SBarry Smith 2962273d9f13SBarry Smith Input Parameters: 29631c4f3114SJed Brown + B - the matrix 296411a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 296567be906fSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 2966273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2967273d9f13SBarry Smith submatrix (same for all local rows) 2968273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2969273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 297067be906fSBarry Smith row) or `NULL`. If you plan to factor the matrix you must leave room for the diagonal entry and 297195742e49SBarry Smith set it even if it is zero. 2972273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2973273d9f13SBarry Smith submatrix (same for all local rows). 2974273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2975273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 297667be906fSBarry Smith each block row) or `NULL`. 2977273d9f13SBarry Smith 297849a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2979273d9f13SBarry Smith 2980273d9f13SBarry Smith Options Database Keys: 29818c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 298267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2983273d9f13SBarry Smith 298467be906fSBarry Smith Level: intermediate 298567be906fSBarry Smith 2986273d9f13SBarry Smith Notes: 298767be906fSBarry Smith For good matrix assembly performance 298867be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 298967be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 299067be906fSBarry Smith performance can be increased by more than a factor of 50. 299167be906fSBarry Smith 299211a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 2993273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2994273d9f13SBarry Smith 2995273d9f13SBarry Smith Storage Information: 2996273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2997273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2998273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2999273d9f13SBarry Smith local matrix (a rectangular submatrix). 3000273d9f13SBarry Smith 3001273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 300267be906fSBarry Smith the local submatrix with either `d_nz` or `d_nnz` (not both). Set 300367be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 3004273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 300567be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 3006273d9f13SBarry Smith 3007273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3008273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3009273d9f13SBarry Smith 3010273d9f13SBarry Smith .vb 3011273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3012a4b1a0f6SJed Brown -------------------------- 3013273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3014273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3015273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3016a4b1a0f6SJed Brown -------------------------- 3017273d9f13SBarry Smith .ve 3018273d9f13SBarry Smith 3019273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3020273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3021273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 302211a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 3023273d9f13SBarry Smith 302467be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 302567be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 3026273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 302767be906fSBarry Smith one expects `d_nz` >> `o_nz`. For large problems you MUST preallocate memory 3028273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3029273d9f13SBarry Smith matrices. 3030273d9f13SBarry Smith 303111a5261eSBarry Smith You can call `MatGetInfo()` to get information on how effective the preallocation was; 3032aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 303367be906fSBarry Smith You can also run with the option `-info` and look for messages with the string 3034aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3035aa95bbe8SBarry Smith 303667be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 3037273d9f13SBarry Smith @*/ 3038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) 3039d71ae5a4SJacob Faibussowitsch { 3040273d9f13SBarry Smith PetscFunctionBegin; 30416ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 30426ba663aaSJed Brown PetscValidType(B, 1); 30436ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 3044cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 30453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3046273d9f13SBarry Smith } 3047273d9f13SBarry Smith 304879bdfe76SSatish Balay /*@C 304911a5261eSBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format 305067be906fSBarry Smith (block compressed row). 305179bdfe76SSatish Balay 3052d083f849SBarry Smith Collective 3053db81eaa0SLois Curfman McInnes 305479bdfe76SSatish Balay Input Parameters: 3055db81eaa0SLois Curfman McInnes + comm - MPI communicator 305611a5261eSBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row 305711a5261eSBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()` 305811a5261eSBarry Smith . m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given) 305992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306092e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 306111a5261eSBarry Smith . n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given) 306292e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 306392e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 306411a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 306511a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 306647a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 306779bdfe76SSatish Balay submatrix (same for all local rows) 306847a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 306992e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30700298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 307195742e49SBarry Smith and set it even if it is zero. 307247a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 307379bdfe76SSatish Balay submatrix (same for all local rows). 307447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 307592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30760298fd71SBarry Smith each block row) or NULL. 307779bdfe76SSatish Balay 307879bdfe76SSatish Balay Output Parameter: 307979bdfe76SSatish Balay . A - the matrix 308079bdfe76SSatish Balay 3081db81eaa0SLois Curfman McInnes Options Database Keys: 30828c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 308367b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30843ffaccefSLois Curfman McInnes 308567be906fSBarry Smith Level: intermediate 308667be906fSBarry Smith 308767be906fSBarry Smith Notes: 308867be906fSBarry Smith For good matrix assembly performance 308967be906fSBarry Smith the user should preallocate the matrix storage by setting the parameters 309067be906fSBarry Smith `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`). By setting these parameters accurately, 309167be906fSBarry Smith performance can be increased by more than a factor of 50. 309267be906fSBarry Smith 309311a5261eSBarry Smith It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`, 3094f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 309511a5261eSBarry Smith [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`] 3096175b88e8SBarry Smith 309749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 309849a6f317SBarry Smith 309947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 310047a75d0bSBarry Smith 310179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 310279bdfe76SSatish Balay (possibly both). 310379bdfe76SSatish Balay 310411a5261eSBarry Smith If `PETSC_DECIDE` or `PETSC_DETERMINE` is used for a particular argument on one processor 3105be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3106be79a94dSBarry Smith 310779bdfe76SSatish Balay Storage Information: 310879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 310979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 311079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 311179bdfe76SSatish Balay local matrix (a rectangular submatrix). 311279bdfe76SSatish Balay 311379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 311479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 311567be906fSBarry Smith `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic 311679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 311767be906fSBarry Smith off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both). 311879bdfe76SSatish Balay 311979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 312079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 312179bdfe76SSatish Balay 3122db81eaa0SLois Curfman McInnes .vb 3123db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3124a4b1a0f6SJed Brown -------------------------- 3125db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3126db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3127db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3128a4b1a0f6SJed Brown -------------------------- 3129db81eaa0SLois Curfman McInnes .ve 313079bdfe76SSatish Balay 313179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 313279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 313379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 313411a5261eSBarry Smith stored simply in the `MATSEQBAIJ` format for compressed row storage. 313579bdfe76SSatish Balay 313667be906fSBarry Smith Now `d_nz` should indicate the number of block nonzeros per row in the d matrix, 313767be906fSBarry Smith and `o_nz` should indicate the number of block nonzeros per row in the o matrix. 313879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 313967be906fSBarry Smith one expects `d_nz` >> `o_nz`. For large problems you MUST preallocate memory 314092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 31416da5968aSLois Curfman McInnes matrices. 314279bdfe76SSatish Balay 314367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 314479bdfe76SSatish Balay @*/ 3145d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) 3146d71ae5a4SJacob Faibussowitsch { 3147b24ad042SBarry Smith PetscMPIInt size; 314879bdfe76SSatish Balay 3149d64ed03dSBarry Smith PetscFunctionBegin; 31509566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 31519566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 31529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3153273d9f13SBarry Smith if (size > 1) { 31549566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 31559566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3156273d9f13SBarry Smith } else { 31579566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 31589566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 31593914022bSBarry Smith } 31603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 316179bdfe76SSatish Balay } 3162026e39d0SSatish Balay 3163d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) 3164d71ae5a4SJacob Faibussowitsch { 31650ac07820SSatish Balay Mat mat; 31660ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3167b24ad042SBarry Smith PetscInt len = 0; 31680ac07820SSatish Balay 3169d64ed03dSBarry Smith PetscFunctionBegin; 3170f4259b30SLisandro Dalcin *newmat = NULL; 31719566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31739566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31747fff6886SHong Zhang 3175d5f3da31SBarry Smith mat->factortype = matin->factortype; 3176273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31770ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31787fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31797fff6886SHong Zhang 3180273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3181d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31820ac07820SSatish Balay a->bs2 = oldmat->bs2; 31830ac07820SSatish Balay a->mbs = oldmat->mbs; 31840ac07820SSatish Balay a->nbs = oldmat->nbs; 31850ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31860ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31870ac07820SSatish Balay 31889566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 31899566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3190899cda47SBarry Smith 31910ac07820SSatish Balay a->size = oldmat->size; 31920ac07820SSatish Balay a->rank = oldmat->rank; 3193aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3194aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3195f4259b30SLisandro Dalcin a->rowindices = NULL; 3196f4259b30SLisandro Dalcin a->rowvalues = NULL; 31970ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3198f4259b30SLisandro Dalcin a->barray = NULL; 3199899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3200899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3201899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3202899cda47SBarry Smith a->cendbs = oldmat->cendbs; 32030ac07820SSatish Balay 3204133cdb44SSatish Balay /* hash table stuff */ 3205f4259b30SLisandro Dalcin a->ht = NULL; 3206f4259b30SLisandro Dalcin a->hd = NULL; 3207133cdb44SSatish Balay a->ht_size = 0; 3208133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 320925fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3210133cdb44SSatish Balay a->ht_total_ct = 0; 3211133cdb44SSatish Balay a->ht_insert_ct = 0; 3212133cdb44SSatish Balay 32139566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 32140ac07820SSatish Balay if (oldmat->colmap) { 3215aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3216eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap)); 321748e59246SSatish Balay #else 32189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 32199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 322048e59246SSatish Balay #endif 3221f4259b30SLisandro Dalcin } else a->colmap = NULL; 32224beb1cfeSHong Zhang 32230ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 32249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 32259566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3226f4259b30SLisandro Dalcin } else a->garray = NULL; 32270ac07820SSatish Balay 32289566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 32299566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 32309566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 32317fff6886SHong Zhang 32329566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 32339566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 32349566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 32350ac07820SSatish Balay *newmat = mat; 32363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 32370ac07820SSatish Balay } 323857b952d6SSatish Balay 3239618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 3240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) 3241d71ae5a4SJacob Faibussowitsch { 3242b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3243b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3244b51a4376SLisandro Dalcin PetscScalar *matvals; 3245b51a4376SLisandro Dalcin 3246b51a4376SLisandro Dalcin PetscFunctionBegin; 32479566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3248b51a4376SLisandro Dalcin 3249b51a4376SLisandro Dalcin /* read in matrix header */ 32509566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 32515f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 32529371c9d4SSatish Balay M = header[1]; 32539371c9d4SSatish Balay N = header[2]; 32549371c9d4SSatish Balay nz = header[3]; 32555f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 32565f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 32575f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3258b51a4376SLisandro Dalcin 3259b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 32609566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3261618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3262618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3263618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3264b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3265b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3266b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3269b51a4376SLisandro Dalcin 3270b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32719566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32725f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32739566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32749566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32759566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32769566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32779371c9d4SSatish Balay mbs = m / bs; 32789371c9d4SSatish Balay nbs = n / bs; 3279b51a4376SLisandro Dalcin 3280b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32829566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32839371c9d4SSatish Balay rowidxs[0] = 0; 32849371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32851c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32865f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3287b51a4376SLisandro Dalcin 3288b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32899566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32909566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32919566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3292b51a4376SLisandro Dalcin 3293b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3294b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3295b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3296618cc2edSLisandro Dalcin PetscBool sbaij, done; 3297b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3298b51a4376SLisandro Dalcin 32999566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 33009566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 33019566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 33029566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3303b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 33049566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 33059566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3306618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3307618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3308618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3309618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3310618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3311618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3312618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3313b51a4376SLisandro Dalcin } else { 33149566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3315b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3316b51a4376SLisandro Dalcin } 3317b51a4376SLisandro Dalcin } 3318618cc2edSLisandro Dalcin } 3319618cc2edSLisandro Dalcin } 3320618cc2edSLisandro Dalcin } 33219566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 33229566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 33239566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33249566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 33259566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3326b51a4376SLisandro Dalcin } 3327b51a4376SLisandro Dalcin 3328b51a4376SLisandro Dalcin /* store matrix values */ 3329b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3330b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 33319566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES)); 3332b51a4376SLisandro Dalcin } 3333b51a4376SLisandro Dalcin 33349566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 33359566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 33369566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 33379566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 33383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3339b51a4376SLisandro Dalcin } 3340b51a4376SLisandro Dalcin 3341d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) 3342d71ae5a4SJacob Faibussowitsch { 33437f489da9SVaclav Hapla PetscBool isbinary; 33444683f7a4SShri Abhyankar 33454683f7a4SShri Abhyankar PetscFunctionBegin; 33469566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 33475f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 33489566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 33493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33504683f7a4SShri Abhyankar } 33514683f7a4SShri Abhyankar 3352133cdb44SSatish Balay /*@ 335311a5261eSBarry Smith MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table 3354133cdb44SSatish Balay 3355133cdb44SSatish Balay Input Parameters: 3356a2b725a8SWilliam Gropp + mat - the matrix 3357a2b725a8SWilliam Gropp - fact - factor 3358133cdb44SSatish Balay 335911a5261eSBarry Smith Options Database Key: 336011a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor 3361fee21e36SBarry Smith 33628c890885SBarry Smith Level: advanced 33638c890885SBarry Smith 336467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()` 3365133cdb44SSatish Balay @*/ 3366d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) 3367d71ae5a4SJacob Faibussowitsch { 33685bf65638SKris Buschelman PetscFunctionBegin; 3369cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 33715bf65638SKris Buschelman } 33725bf65638SKris Buschelman 3373d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) 3374d71ae5a4SJacob Faibussowitsch { 337525fdafccSSatish Balay Mat_MPIBAIJ *baij; 3376133cdb44SSatish Balay 3377133cdb44SSatish Balay PetscFunctionBegin; 3378133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3379133cdb44SSatish Balay baij->ht_fact = fact; 33803ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3381133cdb44SSatish Balay } 3382f2a5309cSSatish Balay 3383d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) 3384d71ae5a4SJacob Faibussowitsch { 3385f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3386ab4d48faSStefano Zampini PetscBool flg; 33875fd66863SKarl Rupp 3388f2a5309cSSatish Balay PetscFunctionBegin; 33899566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33905f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 339121e72a00SBarry Smith if (Ad) *Ad = a->A; 339221e72a00SBarry Smith if (Ao) *Ao = a->B; 339321e72a00SBarry Smith if (colmap) *colmap = a->garray; 33943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3395f2a5309cSSatish Balay } 339685535b8eSBarry Smith 339785535b8eSBarry Smith /* 339885535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 339985535b8eSBarry Smith */ 340085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 340185535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 340285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 340385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 340485535b8eSBarry Smith #endif 340585535b8eSBarry Smith 340685535b8eSBarry Smith /*@C 340711a5261eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()` 340885535b8eSBarry Smith 3409c3339decSBarry Smith Collective 341085535b8eSBarry Smith 341185535b8eSBarry Smith Input Parameters: 341285535b8eSBarry Smith + mat - the matrix 341385535b8eSBarry Smith . min - number of input rows 341485535b8eSBarry Smith . im - input rows 341585535b8eSBarry Smith . nin - number of input columns 341685535b8eSBarry Smith . in - input columns 341785535b8eSBarry Smith . v - numerical values input 341811a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES` 341985535b8eSBarry Smith 342011a5261eSBarry Smith Developer Note: 342111a5261eSBarry Smith This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse. 342285535b8eSBarry Smith 342385535b8eSBarry Smith Level: advanced 342485535b8eSBarry Smith 342567be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()` 342685535b8eSBarry Smith @*/ 3427d71ae5a4SJacob Faibussowitsch PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) 3428d71ae5a4SJacob Faibussowitsch { 342985535b8eSBarry Smith /* convert input arguments to C version */ 343085535b8eSBarry Smith Mat mat = *matin; 343185535b8eSBarry Smith PetscInt m = *min, n = *nin; 343285535b8eSBarry Smith InsertMode addv = *addvin; 343385535b8eSBarry Smith 343485535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 343585535b8eSBarry Smith const MatScalar *value; 343685535b8eSBarry Smith MatScalar *barray = baij->barray; 3437ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 343885535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 343985535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3440d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 344185535b8eSBarry Smith 344285535b8eSBarry Smith PetscFunctionBegin; 344385535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 344426fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 34455f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 34465f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 344785535b8eSBarry Smith if (mat->assembled) { 344885535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 344985535b8eSBarry Smith mat->assembled = PETSC_FALSE; 345085535b8eSBarry Smith } 34519566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 345285535b8eSBarry Smith 345385535b8eSBarry Smith if (!barray) { 34549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 345585535b8eSBarry Smith baij->barray = barray; 345685535b8eSBarry Smith } 345785535b8eSBarry Smith 345826fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 345926fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 346026fbe8dcSKarl Rupp 346185535b8eSBarry Smith for (i = 0; i < m; i++) { 346285535b8eSBarry Smith if (im[i] < 0) continue; 34636bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 346485535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 346585535b8eSBarry Smith row = im[i] - rstart; 346685535b8eSBarry Smith for (j = 0; j < n; j++) { 346785535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 346885535b8eSBarry Smith if ((roworiented) && (n == 1)) { 346985535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 347085535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 347185535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 347285535b8eSBarry Smith } else { /* Here a copy is required */ 347385535b8eSBarry Smith if (roworiented) { 347485535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 347585535b8eSBarry Smith } else { 347685535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 347785535b8eSBarry Smith } 347885535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 3479ad540459SPierre Jolivet for (jj = 0; jj < bs; jj++) *barray++ = *value++; 348085535b8eSBarry Smith } 348185535b8eSBarry Smith barray -= bs2; 348285535b8eSBarry Smith } 348385535b8eSBarry Smith 348485535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 348585535b8eSBarry Smith col = in[j] - cstart; 34869566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3487f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3488f7d195e4SLawrence Mitchell continue; 3489f7d195e4SLawrence Mitchell } else { 3490f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 349185535b8eSBarry Smith if (mat->was_assembled) { 349248a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 349385535b8eSBarry Smith 349485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 349585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34969371c9d4SSatish Balay { 34979371c9d4SSatish Balay PetscInt data; 3498eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data)); 349908401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350085535b8eSBarry Smith } 350185535b8eSBarry Smith #else 350208401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 350385535b8eSBarry Smith #endif 350485535b8eSBarry Smith #endif 350585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 3506eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col)); 350785535b8eSBarry Smith col = (col - 1) / bs; 350885535b8eSBarry Smith #else 350985535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 351085535b8eSBarry Smith #endif 351185535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 35129566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 351385535b8eSBarry Smith col = in[j]; 351485535b8eSBarry Smith } 351526fbe8dcSKarl Rupp } else col = in[j]; 35169566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 351785535b8eSBarry Smith } 351885535b8eSBarry Smith } 351985535b8eSBarry Smith } else { 352085535b8eSBarry Smith if (!baij->donotstash) { 352185535b8eSBarry Smith if (roworiented) { 35229566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352385535b8eSBarry Smith } else { 35249566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 352585535b8eSBarry Smith } 352685535b8eSBarry Smith } 352785535b8eSBarry Smith } 352885535b8eSBarry Smith } 352985535b8eSBarry Smith 353085535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 35319566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 35323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 353385535b8eSBarry Smith } 3534dfb205c3SBarry Smith 3535dfb205c3SBarry Smith /*@ 353611a5261eSBarry Smith MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block 3537dfb205c3SBarry Smith CSR format the local rows. 3538dfb205c3SBarry Smith 3539d083f849SBarry Smith Collective 3540dfb205c3SBarry Smith 3541dfb205c3SBarry Smith Input Parameters: 3542dfb205c3SBarry Smith + comm - MPI communicator 3543dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 354411a5261eSBarry Smith . m - number of local rows (Cannot be `PETSC_DECIDE`) 3545dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 354611a5261eSBarry Smith x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have 3547dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 354811a5261eSBarry Smith . M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given) 354911a5261eSBarry Smith . N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given) 3550483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3551dfb205c3SBarry Smith . j - column indices 3552dfb205c3SBarry Smith - a - matrix values 3553dfb205c3SBarry Smith 3554dfb205c3SBarry Smith Output Parameter: 3555dfb205c3SBarry Smith . mat - the matrix 3556dfb205c3SBarry Smith 3557dfb205c3SBarry Smith Level: intermediate 3558dfb205c3SBarry Smith 3559dfb205c3SBarry Smith Notes: 356067be906fSBarry Smith The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc; 3561dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 356211a5261eSBarry Smith called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays. 3563dfb205c3SBarry Smith 35643adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 35653adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 35663adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 35673adadaf3SJed Brown with column-major ordering within blocks. 35683adadaf3SJed Brown 356967be906fSBarry Smith The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array. 3570dfb205c3SBarry Smith 357167be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3572db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3573dfb205c3SBarry Smith @*/ 3574d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) 3575d71ae5a4SJacob Faibussowitsch { 3576dfb205c3SBarry Smith PetscFunctionBegin; 35775f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35785f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35799566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35809566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35819566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35829566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35839566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35849566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35859566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35869566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 35873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3588dfb205c3SBarry Smith } 3589e561ad89SHong Zhang 3590d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) 3591d71ae5a4SJacob Faibussowitsch { 3592bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3593bd153df0SHong Zhang PetscInt *indx; 3594bd153df0SHong Zhang PetscScalar *values; 3595e561ad89SHong Zhang 3596e561ad89SHong Zhang PetscFunctionBegin; 35979566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3598bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3599bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 36002c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3601bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 360277f764caSHong Zhang PetscMPIInt rank, size; 3603e561ad89SHong Zhang 36049566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36059371c9d4SSatish Balay mbs = m / bs; 36069371c9d4SSatish Balay Nbs = N / cbs; 360748a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3608da91a574SPierre Jolivet nbs = n / cbs; 3609e561ad89SHong Zhang 36109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3611d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 361277f764caSHong Zhang 36139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 36149566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 361577f764caSHong Zhang if (rank == size - 1) { 361677f764caSHong Zhang /* Check sum(nbs) = Nbs */ 36175f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 361877f764caSHong Zhang } 361977f764caSHong Zhang 3620d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3621bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 36229566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3623647a6520SHong Zhang nnz = nnz / bs; 3624647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 36259566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 36269566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3627e561ad89SHong Zhang } 36289566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3629e561ad89SHong Zhang 36309566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 36319566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 36329566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 36339566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 36349566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 36359566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3636d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 36379566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3638e561ad89SHong Zhang } 3639e561ad89SHong Zhang 3640bd153df0SHong Zhang /* numeric phase */ 36419566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 36429566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3643e561ad89SHong Zhang 3644e561ad89SHong Zhang for (i = 0; i < m; i++) { 36459566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3646e561ad89SHong Zhang Ii = i + rstart; 36479566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 36489566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3649e561ad89SHong Zhang } 36509566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 36519566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 36523ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 3653e561ad89SHong Zhang } 3654