xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 26cec32642a02ddeaa9481e1a5bd50b8500ffeea)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
7*26cec326SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
8*26cec326SBarry Smith {
9*26cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
10*26cec326SBarry Smith 
11*26cec326SBarry Smith   PetscFunctionBegin;
12*26cec326SBarry Smith #if defined(PETSC_USE_LOG)
13*26cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
14*26cec326SBarry Smith #endif
15*26cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
16*26cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
17*26cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
18*26cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
19*26cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
20*26cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
21*26cec326SBarry Smith #else
22*26cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
23*26cec326SBarry Smith #endif
24*26cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
25*26cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
26*26cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
27*26cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
28*26cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
29*26cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
30*26cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
31*26cec326SBarry Smith   PetscCall(PetscFree(mat->data));
32*26cec326SBarry Smith 
33*26cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
34*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
35*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
36*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
37*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
38*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
39*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
40*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
41*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
42*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
43*26cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
44*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
45*26cec326SBarry Smith #endif
46*26cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
47*26cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
48*26cec326SBarry Smith }
49*26cec326SBarry Smith 
50*26cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
51*26cec326SBarry Smith #define TYPE BAIJ
52*26cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
53*26cec326SBarry Smith #undef TYPE
54*26cec326SBarry Smith 
557ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
567ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
577ea3e4caSstefano_zampini #endif
587ea3e4caSstefano_zampini 
59d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
60d71ae5a4SJacob Faibussowitsch {
617843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
624e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
634e879edeSHong Zhang   PetscScalar       *va, *vv;
644e879edeSHong Zhang   Vec                vB, vA;
654e879edeSHong Zhang   const PetscScalar *vb;
667843d17aSBarry Smith 
677843d17aSBarry Smith   PetscFunctionBegin;
689566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
699566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
704e879edeSHong Zhang 
719566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
72985db425SBarry Smith   if (idx) {
734e879edeSHong Zhang     for (i = 0; i < m; i++) {
7426fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7526fbe8dcSKarl Rupp     }
76985db425SBarry Smith   }
777843d17aSBarry Smith 
789566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
809566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
817843d17aSBarry Smith 
829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
839566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
844e879edeSHong Zhang   for (i = 0; i < m; i++) {
8526fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
864e879edeSHong Zhang       vv[i] = vb[i];
874e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
884e879edeSHong Zhang     } else {
894e879edeSHong Zhang       vv[i] = va[i];
909371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
9126fbe8dcSKarl Rupp     }
927843d17aSBarry Smith   }
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
969566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
989566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1007843d17aSBarry Smith }
1017843d17aSBarry Smith 
102d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
103d71ae5a4SJacob Faibussowitsch {
1047fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1057fc3c18eSBarry Smith 
1067fc3c18eSBarry Smith   PetscFunctionBegin;
1079566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1089566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1107fc3c18eSBarry Smith }
1117fc3c18eSBarry Smith 
112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
113d71ae5a4SJacob Faibussowitsch {
1147fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1157fc3c18eSBarry Smith 
1167fc3c18eSBarry Smith   PetscFunctionBegin;
1179566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1189566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1207fc3c18eSBarry Smith }
1217fc3c18eSBarry Smith 
122537820f0SBarry Smith /*
123537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
12457b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
125e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
12657b952d6SSatish Balay    length of colmap equals the global matrix length.
12757b952d6SSatish Balay */
128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
129d71ae5a4SJacob Faibussowitsch {
13057b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
13157b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
132d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
13357b952d6SSatish Balay 
134d64ed03dSBarry Smith   PetscFunctionBegin;
135aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
136eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
137c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
13848e59246SSatish Balay #else
1399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
140928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
14148e59246SSatish Balay #endif
1423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14357b952d6SSatish Balay }
14457b952d6SSatish Balay 
145d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
14680c1aa95SSatish Balay   { \
14780c1aa95SSatish Balay     brow = row / bs; \
1489371c9d4SSatish Balay     rp   = aj + ai[brow]; \
1499371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
1509371c9d4SSatish Balay     rmax = aimax[brow]; \
1519371c9d4SSatish Balay     nrow = ailen[brow]; \
15280c1aa95SSatish Balay     bcol = col / bs; \
1539371c9d4SSatish Balay     ridx = row % bs; \
1549371c9d4SSatish Balay     cidx = col % bs; \
1559371c9d4SSatish Balay     low  = 0; \
1569371c9d4SSatish Balay     high = nrow; \
157ab26458aSBarry Smith     while (high - low > 3) { \
158ab26458aSBarry Smith       t = (low + high) / 2; \
159ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
160ab26458aSBarry Smith       else low = t; \
161ab26458aSBarry Smith     } \
162ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
16380c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
16480c1aa95SSatish Balay       if (rp[_i] == bcol) { \
16580c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
166eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
167eada6651SSatish Balay         else *bap = value; \
168ac7a638eSSatish Balay         goto a_noinsert; \
16980c1aa95SSatish Balay       } \
17080c1aa95SSatish Balay     } \
17189280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1725f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
173fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
17480c1aa95SSatish Balay     N = nrow++ - 1; \
17580c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1769566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1779566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1789566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
17980c1aa95SSatish Balay     rp[_i]                          = bcol; \
18080c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
181ac7a638eSSatish Balay   a_noinsert:; \
18280c1aa95SSatish Balay     ailen[brow] = nrow; \
18380c1aa95SSatish Balay   }
18457b952d6SSatish Balay 
185d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
186ac7a638eSSatish Balay   { \
187ac7a638eSSatish Balay     brow = row / bs; \
1889371c9d4SSatish Balay     rp   = bj + bi[brow]; \
1899371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
1909371c9d4SSatish Balay     rmax = bimax[brow]; \
1919371c9d4SSatish Balay     nrow = bilen[brow]; \
192ac7a638eSSatish Balay     bcol = col / bs; \
1939371c9d4SSatish Balay     ridx = row % bs; \
1949371c9d4SSatish Balay     cidx = col % bs; \
1959371c9d4SSatish Balay     low  = 0; \
1969371c9d4SSatish Balay     high = nrow; \
197ac7a638eSSatish Balay     while (high - low > 3) { \
198ac7a638eSSatish Balay       t = (low + high) / 2; \
199ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
200ac7a638eSSatish Balay       else low = t; \
201ac7a638eSSatish Balay     } \
202ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
203ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
204ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
205ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
206ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
207ac7a638eSSatish Balay         else *bap = value; \
208ac7a638eSSatish Balay         goto b_noinsert; \
209ac7a638eSSatish Balay       } \
210ac7a638eSSatish Balay     } \
21189280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2125f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
213fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
214ac7a638eSSatish Balay     N = nrow++ - 1; \
215ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2169566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2179566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
219ac7a638eSSatish Balay     rp[_i]                          = bcol; \
220ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
221ac7a638eSSatish Balay   b_noinsert:; \
222ac7a638eSSatish Balay     bilen[brow] = nrow; \
223ac7a638eSSatish Balay   }
224ac7a638eSSatish Balay 
225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
226d71ae5a4SJacob Faibussowitsch {
22757b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
22893fea6afSBarry Smith   MatScalar    value;
229ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
230b24ad042SBarry Smith   PetscInt     i, j, row, col;
231d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
232d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
233d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
23457b952d6SSatish Balay 
235eada6651SSatish Balay   /* Some Variables required in the macro */
23680c1aa95SSatish Balay   Mat          A     = baij->A;
23780c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
238b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2393eda8832SBarry Smith   MatScalar   *aa = a->a;
240ac7a638eSSatish Balay 
241ac7a638eSSatish Balay   Mat          B     = baij->B;
242ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
243b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2443eda8832SBarry Smith   MatScalar   *ba = b->a;
245ac7a638eSSatish Balay 
246b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
247b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2483eda8832SBarry Smith   MatScalar *ap, *bap;
24980c1aa95SSatish Balay 
250d64ed03dSBarry Smith   PetscFunctionBegin;
25157b952d6SSatish Balay   for (i = 0; i < m; i++) {
2525ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2535f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
25457b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
25557b952d6SSatish Balay       row = im[i] - rstart_orig;
25657b952d6SSatish Balay       for (j = 0; j < n; j++) {
25757b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
25857b952d6SSatish Balay           col = in[j] - cstart_orig;
259db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
260db4deed7SKarl Rupp           else value = v[i + j * m];
261d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
262f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
263f7d195e4SLawrence Mitchell           continue;
264f7d195e4SLawrence Mitchell         } else {
265f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
26657b952d6SSatish Balay           if (mat->was_assembled) {
26748a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
268aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
269eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
270bba1ac68SSatish Balay             col = col - 1;
27148e59246SSatish Balay #else
272bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
27348e59246SSatish Balay #endif
274c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
2759566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2768295de27SSatish Balay               col = in[j];
2779bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2789bf004c3SSatish Balay               B     = baij->B;
2799bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2809371c9d4SSatish Balay               bimax = b->imax;
2819371c9d4SSatish Balay               bi    = b->i;
2829371c9d4SSatish Balay               bilen = b->ilen;
2839371c9d4SSatish Balay               bj    = b->j;
2849bf004c3SSatish Balay               ba    = b->a;
285f7d195e4SLawrence Mitchell             } else {
286f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
287f7d195e4SLawrence Mitchell               col += in[j] % bs;
288f7d195e4SLawrence Mitchell             }
2898295de27SSatish Balay           } else col = in[j];
290db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
291db4deed7SKarl Rupp           else value = v[i + j * m];
292d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
2939566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
29457b952d6SSatish Balay         }
29557b952d6SSatish Balay       }
296d64ed03dSBarry Smith     } else {
2975f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
29890f02eecSBarry Smith       if (!baij->donotstash) {
2995080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
300ff2fd236SBarry Smith         if (roworiented) {
3019566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
302ff2fd236SBarry Smith         } else {
3039566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
30457b952d6SSatish Balay         }
30557b952d6SSatish Balay       }
30657b952d6SSatish Balay     }
30790f02eecSBarry Smith   }
3083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30957b952d6SSatish Balay }
31057b952d6SSatish Balay 
311d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
312d71ae5a4SJacob Faibussowitsch {
313880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3148ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
315880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3168ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
317880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
318880c6e6aSBarry Smith   const PetscScalar *value       = v;
319880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
320880c6e6aSBarry Smith 
321880c6e6aSBarry Smith   PetscFunctionBegin;
322880c6e6aSBarry Smith   rp    = aj + ai[row];
323880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
324880c6e6aSBarry Smith   rmax  = imax[row];
325880c6e6aSBarry Smith   nrow  = ailen[row];
3268ab52850SBarry Smith   value = v;
3278ab52850SBarry Smith   low   = 0;
3288ab52850SBarry Smith   high  = nrow;
329880c6e6aSBarry Smith   while (high - low > 7) {
330880c6e6aSBarry Smith     t = (low + high) / 2;
331880c6e6aSBarry Smith     if (rp[t] > col) high = t;
332880c6e6aSBarry Smith     else low = t;
333880c6e6aSBarry Smith   }
334880c6e6aSBarry Smith   for (i = low; i < high; i++) {
335880c6e6aSBarry Smith     if (rp[i] > col) break;
336880c6e6aSBarry Smith     if (rp[i] == col) {
337880c6e6aSBarry Smith       bap = ap + bs2 * i;
338880c6e6aSBarry Smith       if (roworiented) {
339880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3408ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
341ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
342880c6e6aSBarry Smith           }
343880c6e6aSBarry Smith         } else {
3448ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
345ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
346880c6e6aSBarry Smith           }
347880c6e6aSBarry Smith         }
348880c6e6aSBarry Smith       } else {
349880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3508ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
351ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
352880c6e6aSBarry Smith             bap += bs;
353880c6e6aSBarry Smith           }
354880c6e6aSBarry Smith         } else {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
356ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
357880c6e6aSBarry Smith             bap += bs;
358880c6e6aSBarry Smith           }
359880c6e6aSBarry Smith         }
360880c6e6aSBarry Smith       }
361880c6e6aSBarry Smith       goto noinsert2;
362880c6e6aSBarry Smith     }
363880c6e6aSBarry Smith   }
364880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3655f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
366880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3679371c9d4SSatish Balay   N = nrow++ - 1;
3689371c9d4SSatish Balay   high++;
369880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3709566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3719566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
372880c6e6aSBarry Smith   rp[i] = col;
373880c6e6aSBarry Smith   bap   = ap + bs2 * i;
374880c6e6aSBarry Smith   if (roworiented) {
3758ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
376ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   } else {
3798ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
380ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
381880c6e6aSBarry Smith     }
382880c6e6aSBarry Smith   }
383880c6e6aSBarry Smith noinsert2:;
384880c6e6aSBarry Smith   ailen[row] = nrow;
3853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
386880c6e6aSBarry Smith }
387880c6e6aSBarry Smith 
3888ab52850SBarry Smith /*
3898ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3908ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3918ab52850SBarry Smith */
392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
393d71ae5a4SJacob Faibussowitsch {
394ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
395dd6ea824SBarry Smith   const PetscScalar *value;
396f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
397ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
398899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
399899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
400d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
401ab26458aSBarry Smith 
402b16ae2b1SBarry Smith   PetscFunctionBegin;
40330793edcSSatish Balay   if (!barray) {
4049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
40582502324SSatish Balay     baij->barray = barray;
40630793edcSSatish Balay   }
40730793edcSSatish Balay 
40826fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
40926fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
41026fbe8dcSKarl Rupp 
411ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4125ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4136bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
414ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
415ab26458aSBarry Smith       row = im[i] - rstart;
416ab26458aSBarry Smith       for (j = 0; j < n; j++) {
41715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
41815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
419f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
42015b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
421f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
42215b57d14SSatish Balay         } else { /* Here a copy is required */
423ab26458aSBarry Smith           if (roworiented) {
42453ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
425ab26458aSBarry Smith           } else {
42653ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
427abef11f7SSatish Balay           }
42853ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
42926fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
43053ef36baSBarry Smith             barray += bs;
43147513183SBarry Smith           }
43230793edcSSatish Balay           barray -= bs2;
43315b57d14SSatish Balay         }
434abef11f7SSatish Balay 
435abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
436abef11f7SSatish Balay           col = in[j] - cstart;
4379566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
438f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
439f7d195e4SLawrence Mitchell           continue;
440f7d195e4SLawrence Mitchell         } else {
441f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
442ab26458aSBarry Smith           if (mat->was_assembled) {
44348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
444a5eb4965SSatish Balay 
4452515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
446aa482453SBarry Smith   #if defined(PETSC_USE_CTABLE)
4479371c9d4SSatish Balay             {
4489371c9d4SSatish Balay               PetscInt data;
449eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
45008401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
451fa46199cSSatish Balay             }
45248e59246SSatish Balay   #else
45308401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
454a5eb4965SSatish Balay   #endif
45548e59246SSatish Balay #endif
456aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
457eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
458fa46199cSSatish Balay             col = (col - 1) / bs;
45948e59246SSatish Balay #else
460a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1) / bs;
46148e59246SSatish Balay #endif
4620e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
4639566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
464ab26458aSBarry Smith               col = in[j];
4655f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
466db4deed7SKarl Rupp           } else col = in[j];
4679566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
468ab26458aSBarry Smith         }
469ab26458aSBarry Smith       }
470d64ed03dSBarry Smith     } else {
4715f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
472ab26458aSBarry Smith       if (!baij->donotstash) {
473ff2fd236SBarry Smith         if (roworiented) {
4749566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
475ff2fd236SBarry Smith         } else {
4769566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
477ff2fd236SBarry Smith         }
478abef11f7SSatish Balay       }
479ab26458aSBarry Smith     }
480ab26458aSBarry Smith   }
4813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482ab26458aSBarry Smith }
4836fa18ffdSBarry Smith 
4840bdbc534SSatish Balay #define HASH_KEY             0.6180339887
485b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
486b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
487b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
489d71ae5a4SJacob Faibussowitsch {
4900bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
491ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
492b24ad042SBarry Smith   PetscInt     i, j, row, col;
493d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
494d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
495d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
496329f5518SBarry Smith   PetscReal    tmp;
4973eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
498b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
4990bdbc534SSatish Balay 
5000bdbc534SSatish Balay   PetscFunctionBegin;
5010bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50276bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5035f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5045f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50576bd3646SJed Brown     }
5060bdbc534SSatish Balay     row = im[i];
507c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5080bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5090bdbc534SSatish Balay         col = in[j];
510db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
511db4deed7SKarl Rupp         else value = v[i + j * m];
512b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
513c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
514c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5150bdbc534SSatish Balay 
516c2760754SSatish Balay         idx = h1;
51776bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
518187ce0cbSSatish Balay           insert_ct++;
519187ce0cbSSatish Balay           total_ct++;
520187ce0cbSSatish Balay           if (HT[idx] != key) {
5219371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5229371c9d4SSatish Balay               ;
523187ce0cbSSatish Balay             if (idx == size) {
5249371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5259371c9d4SSatish Balay                 ;
5265f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
527187ce0cbSSatish Balay             }
528187ce0cbSSatish Balay           }
52976bd3646SJed Brown         } else if (HT[idx] != key) {
5309371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
5319371c9d4SSatish Balay             ;
532c2760754SSatish Balay           if (idx == size) {
5339371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
5349371c9d4SSatish Balay               ;
5355f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536c2760754SSatish Balay           }
537c2760754SSatish Balay         }
538c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
539c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5410bdbc534SSatish Balay       }
54226fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
543ff2fd236SBarry Smith       if (roworiented) {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545ff2fd236SBarry Smith       } else {
5469566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5470bdbc534SSatish Balay       }
5480bdbc534SSatish Balay     }
5490bdbc534SSatish Balay   }
55076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
551abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
552abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55376bd3646SJed Brown   }
5543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5550bdbc534SSatish Balay }
5560bdbc534SSatish Balay 
557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558d71ae5a4SJacob Faibussowitsch {
5590bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
560ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
561b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
562899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
563d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565329f5518SBarry Smith   PetscReal          tmp;
5663eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
567dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
568b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5690bdbc534SSatish Balay 
570d0a41580SSatish Balay   PetscFunctionBegin;
57126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57326fbe8dcSKarl Rupp 
5740bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5765f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5775f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57876bd3646SJed Brown     }
5790bdbc534SSatish Balay     row = im[i];
580ab715e2cSSatish Balay     v_t = v + i * nbs2;
581c2760754SSatish Balay     if (row >= rstart && row < rend) {
5820bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5830bdbc534SSatish Balay         col = in[j];
5840bdbc534SSatish Balay 
5850bdbc534SSatish Balay         /* Look up into the Hash Table */
586c2760754SSatish Balay         key = row * Nbs + col + 1;
587c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5880bdbc534SSatish Balay 
589c2760754SSatish Balay         idx = h1;
59076bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
591187ce0cbSSatish Balay           total_ct++;
592187ce0cbSSatish Balay           insert_ct++;
593187ce0cbSSatish Balay           if (HT[idx] != key) {
5949371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5959371c9d4SSatish Balay               ;
596187ce0cbSSatish Balay             if (idx == size) {
5979371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5989371c9d4SSatish Balay                 ;
5995f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
600187ce0cbSSatish Balay             }
601187ce0cbSSatish Balay           }
60276bd3646SJed Brown         } else if (HT[idx] != key) {
6039371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
6049371c9d4SSatish Balay             ;
605c2760754SSatish Balay           if (idx == size) {
6069371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
6079371c9d4SSatish Balay               ;
6085f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
609c2760754SSatish Balay           }
610c2760754SSatish Balay         }
611c2760754SSatish Balay         baij_a = HD[idx];
6120bdbc534SSatish Balay         if (roworiented) {
613c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
614187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
615187ce0cbSSatish Balay           value = v_t;
616187ce0cbSSatish Balay           v_t += bs;
617fef45726SSatish Balay           if (addv == ADD_VALUES) {
618c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
619ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
620b4cc0f5aSSatish Balay             }
621fef45726SSatish Balay           } else {
622c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
623ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
624fef45726SSatish Balay             }
625fef45726SSatish Balay           }
6260bdbc534SSatish Balay         } else {
6270bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
628fef45726SSatish Balay           if (addv == ADD_VALUES) {
629b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
631fef45726SSatish Balay             }
632fef45726SSatish Balay           } else {
633fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
634ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
635b4cc0f5aSSatish Balay             }
6360bdbc534SSatish Balay           }
6370bdbc534SSatish Balay         }
6380bdbc534SSatish Balay       }
6390bdbc534SSatish Balay     } else {
6400bdbc534SSatish Balay       if (!baij->donotstash) {
6410bdbc534SSatish Balay         if (roworiented) {
6429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430bdbc534SSatish Balay         } else {
6449566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6450bdbc534SSatish Balay         }
6460bdbc534SSatish Balay       }
6470bdbc534SSatish Balay     }
6480bdbc534SSatish Balay   }
64976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
650abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
651abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
65276bd3646SJed Brown   }
6533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6540bdbc534SSatish Balay }
655133cdb44SSatish Balay 
656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
657d71ae5a4SJacob Faibussowitsch {
658d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
659d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
660d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
661d6de1c52SSatish Balay 
662133cdb44SSatish Balay   PetscFunctionBegin;
663d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
666d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
667d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
668d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
66954c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
67054c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
671d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
672d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6739566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
674d64ed03dSBarry Smith         } else {
67548a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
676aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
677eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
678fa46199cSSatish Balay           data--;
67948e59246SSatish Balay #else
68048e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
68148e59246SSatish Balay #endif
68248e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
683d9d09a02SSatish Balay           else {
68448e59246SSatish Balay             col = data + idxn[j] % bs;
6859566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
686d6de1c52SSatish Balay           }
687d6de1c52SSatish Balay         }
688d6de1c52SSatish Balay       }
689f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
690d6de1c52SSatish Balay   }
6913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
692d6de1c52SSatish Balay }
693d6de1c52SSatish Balay 
694d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
695d71ae5a4SJacob Faibussowitsch {
696d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
697d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
698d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
699329f5518SBarry Smith   PetscReal    sum = 0.0;
7003eda8832SBarry Smith   MatScalar   *v;
701d6de1c52SSatish Balay 
702d64ed03dSBarry Smith   PetscFunctionBegin;
703d6de1c52SSatish Balay   if (baij->size == 1) {
7049566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
705d6de1c52SSatish Balay   } else {
706d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
707d6de1c52SSatish Balay       v  = amat->a;
7088a62d963SHong Zhang       nz = amat->nz * bs2;
7098a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7109371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7119371c9d4SSatish Balay         v++;
712d6de1c52SSatish Balay       }
713d6de1c52SSatish Balay       v  = bmat->a;
7148a62d963SHong Zhang       nz = bmat->nz * bs2;
7158a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7169371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7179371c9d4SSatish Balay         v++;
718d6de1c52SSatish Balay       }
7191c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7208f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7218a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7228a62d963SHong Zhang       PetscReal *tmp, *tmp2;
723899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7249566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7259566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7269371c9d4SSatish Balay       v  = amat->a;
7279371c9d4SSatish Balay       jj = amat->j;
7288a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7298a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7308a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7318a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7329371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7339371c9d4SSatish Balay             v++;
7348a62d963SHong Zhang           }
7358a62d963SHong Zhang         }
7368a62d963SHong Zhang         jj++;
7378a62d963SHong Zhang       }
7389371c9d4SSatish Balay       v  = bmat->a;
7399371c9d4SSatish Balay       jj = bmat->j;
7408a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7418a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7428a62d963SHong Zhang           col = bs * garray[*jj] + j;
7438a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7449371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7459371c9d4SSatish Balay             v++;
7468a62d963SHong Zhang           }
7478a62d963SHong Zhang         }
7488a62d963SHong Zhang         jj++;
7498a62d963SHong Zhang       }
7501c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7518a62d963SHong Zhang       *nrm = 0.0;
752d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7538a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7548a62d963SHong Zhang       }
7559566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7569566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7578a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
758577dd1f9SKris Buschelman       PetscReal *sums;
7599566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7608a62d963SHong Zhang       sum = 0.0;
7618a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7628a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7638a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7648a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7658a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7668a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7678a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7689371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7699371c9d4SSatish Balay               v++;
7708a62d963SHong Zhang             }
7718a62d963SHong Zhang           }
7728a62d963SHong Zhang         }
7738a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7748a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7758a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7768a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7778a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7789371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7799371c9d4SSatish Balay               v++;
7808a62d963SHong Zhang             }
7818a62d963SHong Zhang           }
7828a62d963SHong Zhang         }
7838a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7848a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7858a62d963SHong Zhang         }
7868a62d963SHong Zhang       }
7871c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7889566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
789ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
790d64ed03dSBarry Smith   }
7913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
792d6de1c52SSatish Balay }
79357b952d6SSatish Balay 
794fef45726SSatish Balay /*
795fef45726SSatish Balay   Creates the hash table, and sets the table
796fef45726SSatish Balay   This table is created only once.
797fef45726SSatish Balay   If new entried need to be added to the matrix
798fef45726SSatish Balay   then the hash table has to be destroyed and
799fef45726SSatish Balay   recreated.
800fef45726SSatish Balay */
801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
802d71ae5a4SJacob Faibussowitsch {
803596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
804596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
805596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
806b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
807fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
808899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
809b24ad042SBarry Smith   PetscInt    *HT, key;
8103eda8832SBarry Smith   MatScalar  **HD;
811329f5518SBarry Smith   PetscReal    tmp;
8126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
813b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8144a15367fSSatish Balay #endif
815fef45726SSatish Balay 
816d64ed03dSBarry Smith   PetscFunctionBegin;
8173ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
818fef45726SSatish Balay 
819fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
820fca92195SBarry Smith   ht_size       = baij->ht_size;
8210bdbc534SSatish Balay 
822fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8239566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
824b9e4cc15SSatish Balay   HD = baij->hd;
825a07cd24cSSatish Balay   HT = baij->ht;
826b9e4cc15SSatish Balay 
827596b8d2eSBarry Smith   /* Loop Over A */
8280bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
829596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8300bdbc534SSatish Balay       row = i + rstart;
8310bdbc534SSatish Balay       col = aj[j] + cstart;
832596b8d2eSBarry Smith 
833187ce0cbSSatish Balay       key = row * Nbs + col + 1;
834fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
835fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
836fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
837fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
838fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
839596b8d2eSBarry Smith           break;
8406cf91177SBarry Smith #if defined(PETSC_USE_INFO)
841187ce0cbSSatish Balay         } else {
842187ce0cbSSatish Balay           ct++;
843187ce0cbSSatish Balay #endif
844596b8d2eSBarry Smith         }
845187ce0cbSSatish Balay       }
8466cf91177SBarry Smith #if defined(PETSC_USE_INFO)
847187ce0cbSSatish Balay       if (k > max) max = k;
848187ce0cbSSatish Balay #endif
849596b8d2eSBarry Smith     }
850596b8d2eSBarry Smith   }
851596b8d2eSBarry Smith   /* Loop Over B */
8520bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
853596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8540bdbc534SSatish Balay       row = i + rstart;
8550bdbc534SSatish Balay       col = garray[bj[j]];
856187ce0cbSSatish Balay       key = row * Nbs + col + 1;
857fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
858fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
859fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
860fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
861fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
862596b8d2eSBarry Smith           break;
8636cf91177SBarry Smith #if defined(PETSC_USE_INFO)
864187ce0cbSSatish Balay         } else {
865187ce0cbSSatish Balay           ct++;
866187ce0cbSSatish Balay #endif
867596b8d2eSBarry Smith         }
868187ce0cbSSatish Balay       }
8696cf91177SBarry Smith #if defined(PETSC_USE_INFO)
870187ce0cbSSatish Balay       if (k > max) max = k;
871187ce0cbSSatish Balay #endif
872596b8d2eSBarry Smith     }
873596b8d2eSBarry Smith   }
874596b8d2eSBarry Smith 
875596b8d2eSBarry Smith   /* Print Summary */
8766cf91177SBarry Smith #if defined(PETSC_USE_INFO)
877fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87826fbe8dcSKarl Rupp     if (HT[i]) j++;
879c38d4ed2SBarry Smith   }
8809566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
881187ce0cbSSatish Balay #endif
8823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
883596b8d2eSBarry Smith }
88457b952d6SSatish Balay 
885d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
886d71ae5a4SJacob Faibussowitsch {
887bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
888b24ad042SBarry Smith   PetscInt     nstash, reallocs;
889bbb85fb3SSatish Balay 
890bbb85fb3SSatish Balay   PetscFunctionBegin;
8913ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
892bbb85fb3SSatish Balay 
8939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8949566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8959566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8969566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8979566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8989566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
900bbb85fb3SSatish Balay }
901bbb85fb3SSatish Balay 
902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
903d71ae5a4SJacob Faibussowitsch {
904bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90591c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
906b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
907e44c0bd4SBarry Smith   PetscInt    *row, *col;
908ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9093eda8832SBarry Smith   MatScalar   *val;
910b24ad042SBarry Smith   PetscMPIInt  n;
911bbb85fb3SSatish Balay 
912bbb85fb3SSatish Balay   PetscFunctionBegin;
9135fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9144cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
915a2d1c673SSatish Balay     while (1) {
9169566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
917a2d1c673SSatish Balay       if (!flg) break;
918a2d1c673SSatish Balay 
919bbb85fb3SSatish Balay       for (i = 0; i < n;) {
920bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92126fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92326fbe8dcSKarl Rupp         }
924bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
925bbb85fb3SSatish Balay         else ncols = n - i;
926bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9279566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
928bbb85fb3SSatish Balay         i = j;
929bbb85fb3SSatish Balay       }
930bbb85fb3SSatish Balay     }
9319566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
932a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
933a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
934a2d1c673SSatish Balay        restore the original flags */
935a2d1c673SSatish Balay     r1 = baij->roworiented;
936a2d1c673SSatish Balay     r2 = a->roworiented;
93791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93826fbe8dcSKarl Rupp 
9397c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
9407c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
94126fbe8dcSKarl Rupp 
94291c97fd4SSatish Balay     (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
943a2d1c673SSatish Balay     while (1) {
9449566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
945a2d1c673SSatish Balay       if (!flg) break;
946a2d1c673SSatish Balay 
947a2d1c673SSatish Balay       for (i = 0; i < n;) {
948a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
95026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
95126fbe8dcSKarl Rupp         }
952a2d1c673SSatish Balay         if (j < n) ncols = j - i;
953a2d1c673SSatish Balay         else ncols = n - i;
9549566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
955a2d1c673SSatish Balay         i = j;
956a2d1c673SSatish Balay       }
957a2d1c673SSatish Balay     }
9589566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95926fbe8dcSKarl Rupp 
960a2d1c673SSatish Balay     baij->roworiented = r1;
961a2d1c673SSatish Balay     a->roworiented    = r2;
96226fbe8dcSKarl Rupp 
96391c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
964bbb85fb3SSatish Balay   }
965bbb85fb3SSatish Balay 
9669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
968bbb85fb3SSatish Balay 
969bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9706aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
971bbb85fb3SSatish Balay   /*
972bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
973bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
974bbb85fb3SSatish Balay   */
975bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9765f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
97748a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
978bbb85fb3SSatish Balay   }
979bbb85fb3SSatish Balay 
98048a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
983bbb85fb3SSatish Balay 
9846cf91177SBarry Smith #if defined(PETSC_USE_INFO)
985bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9869566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98726fbe8dcSKarl Rupp 
988bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
989bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
990bbb85fb3SSatish Balay   }
991bbb85fb3SSatish Balay #endif
992bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9939566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99426fbe8dcSKarl Rupp 
995bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
996bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
997bbb85fb3SSatish Balay   }
998bbb85fb3SSatish Balay 
9999566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
100026fbe8dcSKarl Rupp 
1001f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
10024f9cfa9eSBarry Smith 
10034f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
10044f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
1005e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
10061c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1007e56f5c9eSBarry Smith   }
10083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1009bbb85fb3SSatish Balay }
101057b952d6SSatish Balay 
10117da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10129804daf3SBarry Smith #include <petscdraw.h>
1013d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1014d71ae5a4SJacob Faibussowitsch {
101557b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10167da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1017d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1018ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1019b0a32e0cSBarry Smith   PetscViewer       sviewer;
1020f3ef73ceSBarry Smith   PetscViewerFormat format;
102157b952d6SSatish Balay 
1022d64ed03dSBarry Smith   PetscFunctionBegin;
10239566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
102532077d6dSBarry Smith   if (iascii) {
10269566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1027456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10284e220ebcSLois Curfman McInnes       MatInfo info;
10299566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10309566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10319566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10329371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10339371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10349566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10369566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10379566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10389566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10399566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10409566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10419566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10423ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1043fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10449566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10453ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104604929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10473ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104857b952d6SSatish Balay     }
104957b952d6SSatish Balay   }
105057b952d6SSatish Balay 
10510f5bd95cSBarry Smith   if (isdraw) {
1052b0a32e0cSBarry Smith     PetscDraw draw;
1053ace3abfcSBarry Smith     PetscBool isnull;
10549566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10559566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10563ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
105757b952d6SSatish Balay   }
105857b952d6SSatish Balay 
10597da1fb6eSBarry Smith   {
106057b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
106157b952d6SSatish Balay     Mat          A;
106257b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1063d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10643eda8832SBarry Smith     MatScalar   *a;
10653e219373SBarry Smith     const char  *matname;
106657b952d6SSatish Balay 
1067f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1068f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10699566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1070dd400576SPatrick Sanan     if (rank == 0) {
10719566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1072d64ed03dSBarry Smith     } else {
10739566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
107457b952d6SSatish Balay     }
10759566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10769566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
107857b952d6SSatish Balay 
107957b952d6SSatish Balay     /* copy over the A part */
108057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10819371c9d4SSatish Balay     ai   = Aloc->i;
10829371c9d4SSatish Balay     aj   = Aloc->j;
10839371c9d4SSatish Balay     a    = Aloc->a;
10849566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
108557b952d6SSatish Balay 
108657b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1087899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108826fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108957b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1090899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
109157b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10929566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10939371c9d4SSatish Balay           col++;
10949371c9d4SSatish Balay           a += bs;
109557b952d6SSatish Balay         }
109657b952d6SSatish Balay       }
109757b952d6SSatish Balay     }
109857b952d6SSatish Balay     /* copy over the B part */
109957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
11009371c9d4SSatish Balay     ai   = Aloc->i;
11019371c9d4SSatish Balay     aj   = Aloc->j;
11029371c9d4SSatish Balay     a    = Aloc->a;
110357b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1104899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
110526fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
110657b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
110757b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
110857b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11099566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11109371c9d4SSatish Balay           col++;
11119371c9d4SSatish Balay           a += bs;
111257b952d6SSatish Balay         }
111357b952d6SSatish Balay       }
111457b952d6SSatish Balay     }
11159566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11169566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11179566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
111855843e3eSBarry Smith     /*
111955843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1120b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
112155843e3eSBarry Smith     */
11229566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
112323a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1124dd400576SPatrick Sanan     if (rank == 0) {
112523a3927dSBarry Smith       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname));
11269566063dSJacob Faibussowitsch       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer));
112757b952d6SSatish Balay     }
11289566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11299566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
11309566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
113157b952d6SSatish Balay   }
11323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
113357b952d6SSatish Balay }
113457b952d6SSatish Balay 
1135618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1136d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1137d71ae5a4SJacob Faibussowitsch {
1138b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1139b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1140b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1141b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
1142b51a4376SLisandro Dalcin   PetscInt        header[4], M, N, m, rs, cs, bs, nz, cnt, i, j, ja, jb, k, l;
1143b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1144b51a4376SLisandro Dalcin   PetscScalar    *matvals;
1145660746e0SBarry Smith 
1146660746e0SBarry Smith   PetscFunctionBegin;
11479566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1148b51a4376SLisandro Dalcin 
1149b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1150b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1151b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1152b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1153b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1154b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1155b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1156b51a4376SLisandro Dalcin 
1157b51a4376SLisandro Dalcin   /* write matrix header */
1158660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11599371c9d4SSatish Balay   header[1] = M;
11609371c9d4SSatish Balay   header[2] = N;
11619371c9d4SSatish Balay   header[3] = nz;
11629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Reduce(&nz, &header[3], 1, MPIU_INT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
11639566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1164660746e0SBarry Smith 
1165b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11669566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1167b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11689371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11699566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11709566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1171660746e0SBarry Smith 
1172b51a4376SLisandro Dalcin   /* fill in and store column indices */
11739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1174b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1175b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1176b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1177b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11789371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1179660746e0SBarry Smith       }
1180b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11819371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1182b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11839371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1184660746e0SBarry Smith     }
1185660746e0SBarry Smith   }
11865f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz);
11879566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11889566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1189660746e0SBarry Smith 
1190b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11919566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1192b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1193b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1194b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1195b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11969371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1197660746e0SBarry Smith       }
1198b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11999371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1200b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
12019371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1202660746e0SBarry Smith     }
1203b51a4376SLisandro Dalcin   }
12049566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1206660746e0SBarry Smith 
1207b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12089566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1210660746e0SBarry Smith }
1211660746e0SBarry Smith 
1212d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1213d71ae5a4SJacob Faibussowitsch {
1214ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
121557b952d6SSatish Balay 
1216d64ed03dSBarry Smith   PetscFunctionBegin;
12179566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12189566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12199566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1221660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12229566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12231baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122557b952d6SSatish Balay }
122657b952d6SSatish Balay 
1227d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1228d71ae5a4SJacob Faibussowitsch {
1229cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1230b24ad042SBarry Smith   PetscInt     nt;
1231cee3aa6bSSatish Balay 
1232d64ed03dSBarry Smith   PetscFunctionBegin;
12339566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12345f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12359566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1236da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12379566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12389566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12399566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12409566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1242cee3aa6bSSatish Balay }
1243cee3aa6bSSatish Balay 
1244d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1245d71ae5a4SJacob Faibussowitsch {
1246cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1247d64ed03dSBarry Smith 
1248d64ed03dSBarry Smith   PetscFunctionBegin;
12499566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12509566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12519566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12529566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1254cee3aa6bSSatish Balay }
1255cee3aa6bSSatish Balay 
1256d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1257d71ae5a4SJacob Faibussowitsch {
1258cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1259cee3aa6bSSatish Balay 
1260d64ed03dSBarry Smith   PetscFunctionBegin;
1261cee3aa6bSSatish Balay   /* do nondiagonal part */
12629566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1263cee3aa6bSSatish Balay   /* do local part */
12649566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1265e4a140f6SJunchao Zhang   /* add partial results together */
12669566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12679566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1269cee3aa6bSSatish Balay }
1270cee3aa6bSSatish Balay 
1271d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1272d71ae5a4SJacob Faibussowitsch {
1273cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1274cee3aa6bSSatish Balay 
1275d64ed03dSBarry Smith   PetscFunctionBegin;
1276cee3aa6bSSatish Balay   /* do nondiagonal part */
12779566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1278cee3aa6bSSatish Balay   /* do local part */
12799566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1280e4a140f6SJunchao Zhang   /* add partial results together */
12819566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12829566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1284cee3aa6bSSatish Balay }
1285cee3aa6bSSatish Balay 
1286cee3aa6bSSatish Balay /*
1287cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1288cee3aa6bSSatish Balay    diagonal block
1289cee3aa6bSSatish Balay */
1290d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1291d71ae5a4SJacob Faibussowitsch {
1292d64ed03dSBarry Smith   PetscFunctionBegin;
12935f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12949566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1296cee3aa6bSSatish Balay }
1297cee3aa6bSSatish Balay 
1298d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1299d71ae5a4SJacob Faibussowitsch {
1300cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1301d64ed03dSBarry Smith 
1302d64ed03dSBarry Smith   PetscFunctionBegin;
13039566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
13049566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1306cee3aa6bSSatish Balay }
1307026e39d0SSatish Balay 
1308d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1309d71ae5a4SJacob Faibussowitsch {
1310acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
131187828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1312d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1313d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1314899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1315acdf5bf4SSatish Balay 
1316d64ed03dSBarry Smith   PetscFunctionBegin;
13175f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13185f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1319acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1320acdf5bf4SSatish Balay 
1321acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1322acdf5bf4SSatish Balay     /*
1323acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1324acdf5bf4SSatish Balay     */
1325acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1326b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1327bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1328acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
132926fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1330acdf5bf4SSatish Balay     }
13319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1332acdf5bf4SSatish Balay   }
1333d9d09a02SSatish Balay   lrow = row - brstart;
1334acdf5bf4SSatish Balay 
13359371c9d4SSatish Balay   pvA = &vworkA;
13369371c9d4SSatish Balay   pcA = &cworkA;
13379371c9d4SSatish Balay   pvB = &vworkB;
13389371c9d4SSatish Balay   pcB = &cworkB;
13399371c9d4SSatish Balay   if (!v) {
13409371c9d4SSatish Balay     pvA = NULL;
13419371c9d4SSatish Balay     pvB = NULL;
13429371c9d4SSatish Balay   }
13439371c9d4SSatish Balay   if (!idx) {
13449371c9d4SSatish Balay     pcA = NULL;
13459371c9d4SSatish Balay     if (!v) pcB = NULL;
13469371c9d4SSatish Balay   }
13479566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13489566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1349acdf5bf4SSatish Balay   nztot = nzA + nzB;
1350acdf5bf4SSatish Balay 
1351acdf5bf4SSatish Balay   cmap = mat->garray;
1352acdf5bf4SSatish Balay   if (v || idx) {
1353acdf5bf4SSatish Balay     if (nztot) {
1354acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1355b24ad042SBarry Smith       PetscInt imark = -1;
1356acdf5bf4SSatish Balay       if (v) {
1357acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1358acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1359d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1360acdf5bf4SSatish Balay           else break;
1361acdf5bf4SSatish Balay         }
1362acdf5bf4SSatish Balay         imark = i;
1363acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1364acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1365acdf5bf4SSatish Balay       }
1366acdf5bf4SSatish Balay       if (idx) {
1367acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1368acdf5bf4SSatish Balay         if (imark > -1) {
1369ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1370acdf5bf4SSatish Balay         } else {
1371acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
137226fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1373acdf5bf4SSatish Balay             else break;
1374acdf5bf4SSatish Balay           }
1375acdf5bf4SSatish Balay           imark = i;
1376acdf5bf4SSatish Balay         }
1377d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1378d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1379acdf5bf4SSatish Balay       }
1380d64ed03dSBarry Smith     } else {
1381f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1382f4259b30SLisandro Dalcin       if (v) *v = NULL;
1383d212a18eSSatish Balay     }
1384acdf5bf4SSatish Balay   }
1385acdf5bf4SSatish Balay   *nz = nztot;
13869566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13879566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1389acdf5bf4SSatish Balay }
1390acdf5bf4SSatish Balay 
1391d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1392d71ae5a4SJacob Faibussowitsch {
1393acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1394d64ed03dSBarry Smith 
1395d64ed03dSBarry Smith   PetscFunctionBegin;
13965f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1397acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1399acdf5bf4SSatish Balay }
1400acdf5bf4SSatish Balay 
1401d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1402d71ae5a4SJacob Faibussowitsch {
140358667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1404d64ed03dSBarry Smith 
1405d64ed03dSBarry Smith   PetscFunctionBegin;
14069566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14079566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
140958667388SSatish Balay }
14100ac07820SSatish Balay 
1411d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1412d71ae5a4SJacob Faibussowitsch {
14134e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14144e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14153966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14160ac07820SSatish Balay 
1417d64ed03dSBarry Smith   PetscFunctionBegin;
1418d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141926fbe8dcSKarl Rupp 
14209566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
142126fbe8dcSKarl Rupp 
14229371c9d4SSatish Balay   isend[0] = info->nz_used;
14239371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14249371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14259371c9d4SSatish Balay   isend[3] = info->memory;
14269371c9d4SSatish Balay   isend[4] = info->mallocs;
142726fbe8dcSKarl Rupp 
14289566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
142926fbe8dcSKarl Rupp 
14309371c9d4SSatish Balay   isend[0] += info->nz_used;
14319371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14329371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14339371c9d4SSatish Balay   isend[3] += info->memory;
14349371c9d4SSatish Balay   isend[4] += info->mallocs;
143526fbe8dcSKarl Rupp 
14360ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14374e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14384e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14394e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14404e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14414e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14420ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14431c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
144426fbe8dcSKarl Rupp 
14454e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14464e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14474e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14484e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14494e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14500ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14511c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
145226fbe8dcSKarl Rupp 
14534e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14544e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14554e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14564e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14574e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
145898921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14594e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14604e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14614e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14630ac07820SSatish Balay }
14640ac07820SSatish Balay 
1465d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1466d71ae5a4SJacob Faibussowitsch {
146758667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
146858667388SSatish Balay 
1469d64ed03dSBarry Smith   PetscFunctionBegin;
147012c028f9SKris Buschelman   switch (op) {
1471512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1474a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
147512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147643674050SBarry Smith     MatCheckPreallocated(A, 1);
14779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14789566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
147912c028f9SKris Buschelman     break;
148012c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
148143674050SBarry Smith     MatCheckPreallocated(A, 1);
14824e0d8c25SBarry Smith     a->roworiented = flg;
148326fbe8dcSKarl Rupp 
14849566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14859566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148612c028f9SKris Buschelman     break;
14878c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1488d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1489d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1490d71ae5a4SJacob Faibussowitsch     break;
1491d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1492d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1493d71ae5a4SJacob Faibussowitsch     break;
149412c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14954e0d8c25SBarry Smith     a->ht_flag = flg;
1496abf3b562SBarry Smith     a->ht_fact = 1.39;
149712c028f9SKris Buschelman     break;
149877e54ba9SKris Buschelman   case MAT_SYMMETRIC:
149977e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15002188ac68SBarry Smith   case MAT_HERMITIAN:
1501c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15022188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1503b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1504b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1505b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
150677e54ba9SKris Buschelman     break;
1507d71ae5a4SJacob Faibussowitsch   default:
1508d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1509d64ed03dSBarry Smith   }
15103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151158667388SSatish Balay }
151258667388SSatish Balay 
1513d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1514d71ae5a4SJacob Faibussowitsch {
15150ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15160ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15170ac07820SSatish Balay   Mat          B;
1518d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1519d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15203eda8832SBarry Smith   MatScalar   *a;
15210ac07820SSatish Balay 
1522d64ed03dSBarry Smith   PetscFunctionBegin;
15237fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1524cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15259566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15269566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15279566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15282e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15299566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1530fc4dec0aSBarry Smith   } else {
1531fc4dec0aSBarry Smith     B = *matout;
1532fc4dec0aSBarry Smith   }
15330ac07820SSatish Balay 
15340ac07820SSatish Balay   /* copy over the A part */
15350ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15369371c9d4SSatish Balay   ai   = Aloc->i;
15379371c9d4SSatish Balay   aj   = Aloc->j;
15389371c9d4SSatish Balay   a    = Aloc->a;
15399566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15400ac07820SSatish Balay 
15410ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1542899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154326fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15440ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1545899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15460ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15479566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
154826fbe8dcSKarl Rupp 
15499371c9d4SSatish Balay         col++;
15509371c9d4SSatish Balay         a += bs;
15510ac07820SSatish Balay       }
15520ac07820SSatish Balay     }
15530ac07820SSatish Balay   }
15540ac07820SSatish Balay   /* copy over the B part */
15550ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15569371c9d4SSatish Balay   ai   = Aloc->i;
15579371c9d4SSatish Balay   aj   = Aloc->j;
15589371c9d4SSatish Balay   a    = Aloc->a;
15590ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1560899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
156126fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15620ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15630ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15640ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15659566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
156626fbe8dcSKarl Rupp         col++;
156726fbe8dcSKarl Rupp         a += bs;
15680ac07820SSatish Balay       }
15690ac07820SSatish Balay     }
15700ac07820SSatish Balay   }
15719566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15729566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15739566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15740ac07820SSatish Balay 
1575cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
157648a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15780ac07820SSatish Balay }
15790e95ebc0SSatish Balay 
1580d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1581d71ae5a4SJacob Faibussowitsch {
158236c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
158336c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1584b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15850e95ebc0SSatish Balay 
1586d64ed03dSBarry Smith   PetscFunctionBegin;
15879566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
158836c4a09eSSatish Balay   if (rr) {
15899566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15905f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
159136c4a09eSSatish Balay     /* Overlap communication with computation. */
15929566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
159336c4a09eSSatish Balay   }
15940e95ebc0SSatish Balay   if (ll) {
15959566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15965f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1597dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15980e95ebc0SSatish Balay   }
159936c4a09eSSatish Balay   /* scale  the diagonal block */
1600dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
160136c4a09eSSatish Balay 
160236c4a09eSSatish Balay   if (rr) {
160336c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
16049566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1605dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
160636c4a09eSSatish Balay   }
16073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16080e95ebc0SSatish Balay }
16090e95ebc0SSatish Balay 
1610d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1611d71ae5a4SJacob Faibussowitsch {
16120ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
161365a92638SMatthew G. Knepley   PetscInt    *lrows;
16146e520ac8SStefano Zampini   PetscInt     r, len;
161594342113SStefano Zampini   PetscBool    cong;
16160ac07820SSatish Balay 
1617d64ed03dSBarry Smith   PetscFunctionBegin;
16186e520ac8SStefano Zampini   /* get locally owned rows */
16199566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
162097b48c8fSBarry Smith   /* fix right hand side if needed */
162197b48c8fSBarry Smith   if (x && b) {
162265a92638SMatthew G. Knepley     const PetscScalar *xx;
162365a92638SMatthew G. Knepley     PetscScalar       *bb;
162465a92638SMatthew G. Knepley 
16259566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16269566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
162765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16299566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
163097b48c8fSBarry Smith   }
163197b48c8fSBarry Smith 
16320ac07820SSatish Balay   /* actually zap the local rows */
163372dacd9aSBarry Smith   /*
163472dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1635a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
163672dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
163772dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
163872dacd9aSBarry Smith 
163972dacd9aSBarry Smith   */
16409c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16419566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16429566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
164394342113SStefano Zampini   if ((diag != 0.0) && cong) {
16449566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1645f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16469566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
16475f80ce2aSJacob Faibussowitsch     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1648512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
164965a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
165065a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16519566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1652a07cd24cSSatish Balay     }
16539566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16549566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16559c957beeSSatish Balay   } else {
16569566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1657a07cd24cSSatish Balay   }
16589566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16594f9cfa9eSBarry Smith 
16604f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16614f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
1662e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16631c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1664e56f5c9eSBarry Smith   }
16653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16660ac07820SSatish Balay }
166772dacd9aSBarry Smith 
1668d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1669d71ae5a4SJacob Faibussowitsch {
16706f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1671131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1672131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16736f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16746f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16756f0a72daSMatthew G. Knepley   PetscSF            sf;
16766f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16776f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16786f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16796f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16806f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16816f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16826f0a72daSMatthew G. Knepley 
16836f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16846f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16859566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16866f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16886f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16896f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16905f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16915ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16929566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16935ba17502SJed Brown     }
16946f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16956f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16966f0a72daSMatthew G. Knepley   }
16979566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16989566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16996f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17009566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17019566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17029566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
17036f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17049371c9d4SSatish Balay   for (r = 0; r < n; ++r)
17059371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
17066f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17079566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
17086f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
17099566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17109566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17119566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17126f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17139566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17149566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17159566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17169566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17176f0a72daSMatthew G. Knepley   if (x) {
17189566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17199566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17209566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17219566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17226f0a72daSMatthew G. Knepley   }
17239566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17246f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17256f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17266f0a72daSMatthew G. Knepley     row   = lrows[i];
17276f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
17286f0a72daSMatthew G. Knepley     aa    = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs);
17296f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17306f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17316f0a72daSMatthew G. Knepley       aa += bs;
17326f0a72daSMatthew G. Knepley     }
17336f0a72daSMatthew G. Knepley   }
17346f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17356f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17366f0a72daSMatthew G. Knepley     row = i / bs;
17376f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17386f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17396f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17406f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17416f0a72daSMatthew G. Knepley           aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k;
174289ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17436f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17446f0a72daSMatthew G. Knepley         }
17456f0a72daSMatthew G. Knepley       }
17466f0a72daSMatthew G. Knepley     }
17476f0a72daSMatthew G. Knepley   }
17486f0a72daSMatthew G. Knepley   if (x) {
17499566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17509566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17516f0a72daSMatthew G. Knepley   }
17529566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17549566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17554f9cfa9eSBarry Smith 
17564f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17574f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
17584f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17591c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17604f9cfa9eSBarry Smith   }
17613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17626f0a72daSMatthew G. Knepley }
17636f0a72daSMatthew G. Knepley 
1764d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1765d71ae5a4SJacob Faibussowitsch {
1766bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1767d64ed03dSBarry Smith 
1768d64ed03dSBarry Smith   PetscFunctionBegin;
17699566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1771bb5a7306SBarry Smith }
1772bb5a7306SBarry Smith 
17736849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17740ac07820SSatish Balay 
1775d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1776d71ae5a4SJacob Faibussowitsch {
17777fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17787fc3c18eSBarry Smith   Mat          a, b, c, d;
1779ace3abfcSBarry Smith   PetscBool    flg;
17807fc3c18eSBarry Smith 
17817fc3c18eSBarry Smith   PetscFunctionBegin;
17829371c9d4SSatish Balay   a = matA->A;
17839371c9d4SSatish Balay   b = matA->B;
17849371c9d4SSatish Balay   c = matB->A;
17859371c9d4SSatish Balay   d = matB->B;
17867fc3c18eSBarry Smith 
17879566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
178848a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17891c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17903ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17917fc3c18eSBarry Smith }
17927fc3c18eSBarry Smith 
1793d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1794d71ae5a4SJacob Faibussowitsch {
17953c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17963c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17973c896bc6SHong Zhang 
17983c896bc6SHong Zhang   PetscFunctionBegin;
17993c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18003c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18019566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
18023c896bc6SHong Zhang   } else {
18039566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
18049566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
18053c896bc6SHong Zhang   }
18069566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
18073ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18083c896bc6SHong Zhang }
1809273d9f13SBarry Smith 
1810d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1811d71ae5a4SJacob Faibussowitsch {
1812001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18134de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18144de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18154de5dceeSHong Zhang 
18164de5dceeSHong Zhang   PetscFunctionBegin;
18179566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18183ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18194de5dceeSHong Zhang }
18204de5dceeSHong Zhang 
1821d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1822d71ae5a4SJacob Faibussowitsch {
18234fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18244fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18254fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1826b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18274fe895cdSHong Zhang 
18284fe895cdSHong Zhang   PetscFunctionBegin;
18294fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18304fe895cdSHong Zhang     PetscScalar alpha = a;
18314fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18324fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18339566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1834792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18354fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18364fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18379566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1838792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18399566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1840ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18419566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18424fe895cdSHong Zhang   } else {
18434de5dceeSHong Zhang     Mat       B;
18444de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18459566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18469566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18479566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18489566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18499566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18509566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18519566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18529566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18539566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18549566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18554de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18569566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18579566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18589566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18599566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18604fe895cdSHong Zhang   }
18613ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18624fe895cdSHong Zhang }
18634fe895cdSHong Zhang 
1864d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1865d71ae5a4SJacob Faibussowitsch {
18665f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18675f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18682726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18692726fb6dSPierre Jolivet 
18709566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18719566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18725f80ce2aSJacob Faibussowitsch   }
18733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18742726fb6dSPierre Jolivet }
18752726fb6dSPierre Jolivet 
1876d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1877d71ae5a4SJacob Faibussowitsch {
187899cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
187999cafbc1SBarry Smith 
188099cafbc1SBarry Smith   PetscFunctionBegin;
18819566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18829566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188499cafbc1SBarry Smith }
188599cafbc1SBarry Smith 
1886d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1887d71ae5a4SJacob Faibussowitsch {
188899cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188999cafbc1SBarry Smith 
189099cafbc1SBarry Smith   PetscFunctionBegin;
18919566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18929566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189499cafbc1SBarry Smith }
189599cafbc1SBarry Smith 
1896d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1897d71ae5a4SJacob Faibussowitsch {
18984aa3045dSJed Brown   IS       iscol_local;
18994aa3045dSJed Brown   PetscInt csize;
19004aa3045dSJed Brown 
19014aa3045dSJed Brown   PetscFunctionBegin;
19029566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1903b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
19049566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
19055f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1906b79d0421SJed Brown   } else {
19079566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1908b79d0421SJed Brown   }
19099566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat));
1910b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19119566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19129566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1913b79d0421SJed Brown   }
19143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19154aa3045dSJed Brown }
191617df9f7cSHong Zhang 
191782094794SBarry Smith /*
191882094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
191982094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19207dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19218f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
192282094794SBarry Smith */
1923d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
1924d71ae5a4SJacob Faibussowitsch {
192582094794SBarry Smith   PetscMPIInt  rank, size;
192682094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1927c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
192829dcf524SDmitry Karpeev   Mat          M, Mreuse;
192982094794SBarry Smith   MatScalar   *vwork, *aa;
1930ce94432eSBarry Smith   MPI_Comm     comm;
193129dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
193282094794SBarry Smith   Mat_SeqBAIJ *aij;
193382094794SBarry Smith 
193482094794SBarry Smith   PetscFunctionBegin;
19359566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19369566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19379566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
193829dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
193929dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19409566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
19419566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
194282094794SBarry Smith 
194382094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19449566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19455f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
19469566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse));
194782094794SBarry Smith   } else {
19489566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse));
194982094794SBarry Smith   }
19509566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19519566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
195282094794SBarry Smith   /*
195382094794SBarry Smith       m - number of local rows
195482094794SBarry Smith       n - number of columns (same on all processors)
195582094794SBarry Smith       rstart - first row in new global matrix generated
195682094794SBarry Smith   */
19579566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19589566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
195982094794SBarry Smith   m = m / bs;
196082094794SBarry Smith   n = n / bs;
196182094794SBarry Smith 
196282094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
196382094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
196482094794SBarry Smith     ii  = aij->i;
196582094794SBarry Smith     jj  = aij->j;
196682094794SBarry Smith 
196782094794SBarry Smith     /*
196882094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
196982094794SBarry Smith         portions of the matrix in order to do correct preallocation
197082094794SBarry Smith     */
197182094794SBarry Smith 
197282094794SBarry Smith     /* first get start and end of "diagonal" columns */
197382094794SBarry Smith     if (csize == PETSC_DECIDE) {
19749566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
197582094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
197682094794SBarry Smith         nlocal = m;
197782094794SBarry Smith       } else {
197882094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
197982094794SBarry Smith       }
198082094794SBarry Smith     } else {
198182094794SBarry Smith       nlocal = csize / bs;
198282094794SBarry Smith     }
19839566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
198482094794SBarry Smith     rstart = rend - nlocal;
1985aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
198682094794SBarry Smith 
198782094794SBarry Smith     /* next, compute all the lengths */
19889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
198982094794SBarry Smith     for (i = 0; i < m; i++) {
199082094794SBarry Smith       jend = ii[i + 1] - ii[i];
199182094794SBarry Smith       olen = 0;
199282094794SBarry Smith       dlen = 0;
199382094794SBarry Smith       for (j = 0; j < jend; j++) {
199482094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
199582094794SBarry Smith         else dlen++;
199682094794SBarry Smith         jj++;
199782094794SBarry Smith       }
199882094794SBarry Smith       olens[i] = olen;
199982094794SBarry Smith       dlens[i] = dlen;
200082094794SBarry Smith     }
20019566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
20029566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
20039566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
20049566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20059566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20069566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
200782094794SBarry Smith   } else {
200882094794SBarry Smith     PetscInt ml, nl;
200982094794SBarry Smith 
201082094794SBarry Smith     M = *newmat;
20119566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20125f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20139566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
201482094794SBarry Smith     /*
201582094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
201682094794SBarry Smith        rather than the slower MatSetValues().
201782094794SBarry Smith     */
201882094794SBarry Smith     M->was_assembled = PETSC_TRUE;
201982094794SBarry Smith     M->assembled     = PETSC_FALSE;
202082094794SBarry Smith   }
20219566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20229566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
202382094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
202482094794SBarry Smith   ii  = aij->i;
202582094794SBarry Smith   jj  = aij->j;
202682094794SBarry Smith   aa  = aij->a;
202782094794SBarry Smith   for (i = 0; i < m; i++) {
202882094794SBarry Smith     row   = rstart / bs + i;
202982094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20309371c9d4SSatish Balay     cwork = jj;
20319371c9d4SSatish Balay     jj += nz;
20329371c9d4SSatish Balay     vwork = aa;
20339371c9d4SSatish Balay     aa += nz * bs * bs;
20349566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
203582094794SBarry Smith   }
203682094794SBarry Smith 
20379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
203982094794SBarry Smith   *newmat = M;
204082094794SBarry Smith 
204182094794SBarry Smith   /* save submatrix used in processor for next request */
204282094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20439566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20449566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
204582094794SBarry Smith   }
20463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
204782094794SBarry Smith }
204882094794SBarry Smith 
2049d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2050d71ae5a4SJacob Faibussowitsch {
205182094794SBarry Smith   MPI_Comm        comm, pcomm;
2052a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
205382094794SBarry Smith   const PetscInt *rows;
2054dbf0e21dSBarry Smith   PetscMPIInt     size;
2055a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
205682094794SBarry Smith 
205782094794SBarry Smith   PetscFunctionBegin;
20589566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
205982094794SBarry Smith   /* make a collective version of 'rowp' */
20609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
206182094794SBarry Smith   if (pcomm == comm) {
206282094794SBarry Smith     crowp = rowp;
206382094794SBarry Smith   } else {
20649566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20659566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20669566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20679566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
206882094794SBarry Smith   }
20699566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2070a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20719566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20729566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2073dbf0e21dSBarry Smith   if (size == 1) {
207482094794SBarry Smith     lcolp = colp;
207582094794SBarry Smith   } else {
20769566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
207782094794SBarry Smith   }
20789566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
207975f6568bSJed Brown   /* now we just get the submatrix */
20809566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
20819566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B));
2082a0a83eb5SRémi Lacroix   /* clean up */
208348a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
208448a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
208682094794SBarry Smith }
208782094794SBarry Smith 
2088d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2089d71ae5a4SJacob Faibussowitsch {
20908c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20918c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20928c7482ecSBarry Smith 
20938c7482ecSBarry Smith   PetscFunctionBegin;
209426fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
209526fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
20978c7482ecSBarry Smith }
20988c7482ecSBarry Smith 
2099d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2100d71ae5a4SJacob Faibussowitsch {
2101f6d58c54SBarry Smith   Mat          B;
2102f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2103f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2104f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2105f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2106f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2107f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2108f6d58c54SBarry Smith 
2109f6d58c54SBarry Smith   PetscFunctionBegin;
21109566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2112f6d58c54SBarry Smith 
2113f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2114f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2115f6d58c54SBarry Smith   */
21169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2117ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2119f6d58c54SBarry Smith   displs = recvcounts + size;
2120f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2121f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2122f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2123f6d58c54SBarry Smith   }
21249566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
2125f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2126f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2127f6d58c54SBarry Smith   */
21289566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21299566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21309566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21319566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2132f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2133f6d58c54SBarry Smith 
2134f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2135f6d58c54SBarry Smith     Copy my part of matrix column indices over
2136f6d58c54SBarry Smith   */
2137f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2138f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2139f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2140f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2141f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2142f6d58c54SBarry Smith   cnt        = 0;
2143f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2144f6d58c54SBarry Smith     /* put in lower diagonal portion */
2145f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2146f6d58c54SBarry Smith     while (m > 0) {
2147f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2148f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2149f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2150f6d58c54SBarry Smith       m--;
2151f6d58c54SBarry Smith     }
2152f6d58c54SBarry Smith 
2153f6d58c54SBarry Smith     /* put in diagonal portion */
2154ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2155f6d58c54SBarry Smith 
2156f6d58c54SBarry Smith     /* put in upper diagonal portion */
2157ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2158f6d58c54SBarry Smith   }
21595f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2160f6d58c54SBarry Smith 
2161f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2162f6d58c54SBarry Smith     Gather all column indices to all processors
2163f6d58c54SBarry Smith   */
2164f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2165f6d58c54SBarry Smith     recvcounts[i] = 0;
2166ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2167f6d58c54SBarry Smith   }
2168f6d58c54SBarry Smith   displs[0] = 0;
2169ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21709566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
2171f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2172f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2173f6d58c54SBarry Smith   */
2174f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21759566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2176f6d58c54SBarry Smith   /* set the b->i indices */
2177f6d58c54SBarry Smith   b->i[0] = 0;
2178ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21799566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21829566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2183f6d58c54SBarry Smith 
2184b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2185f6d58c54SBarry Smith   *newmat = B;
21863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2187f6d58c54SBarry Smith }
2188f6d58c54SBarry Smith 
2189d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2190d71ae5a4SJacob Faibussowitsch {
2191b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2192f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2193b1a666ecSBarry Smith 
2194b1a666ecSBarry Smith   PetscFunctionBegin;
2195b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21969566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21973ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2198b1a666ecSBarry Smith   }
2199b1a666ecSBarry Smith 
220048a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
22014e980039SJed Brown 
2202b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2203b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22049566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2205b1a666ecSBarry Smith       its--;
2206b1a666ecSBarry Smith     }
2207b1a666ecSBarry Smith 
2208b1a666ecSBarry Smith     while (its--) {
22099566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22109566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2211b1a666ecSBarry Smith 
2212b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22139566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22149566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2215b1a666ecSBarry Smith 
2216b1a666ecSBarry Smith       /* local sweep */
22179566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2218b1a666ecSBarry Smith     }
2219b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2220b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22219566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2222b1a666ecSBarry Smith       its--;
2223b1a666ecSBarry Smith     }
2224b1a666ecSBarry Smith     while (its--) {
22259566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22269566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2227b1a666ecSBarry Smith 
2228b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22299566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22309566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2231b1a666ecSBarry Smith 
2232b1a666ecSBarry Smith       /* local sweep */
22339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2234b1a666ecSBarry Smith     }
2235b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2236b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22379566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2238b1a666ecSBarry Smith       its--;
2239b1a666ecSBarry Smith     }
2240b1a666ecSBarry Smith     while (its--) {
22419566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22429566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2243b1a666ecSBarry Smith 
2244b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22459566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22469566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2247b1a666ecSBarry Smith 
2248b1a666ecSBarry Smith       /* local sweep */
22499566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2250b1a666ecSBarry Smith     }
2251ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2252b1a666ecSBarry Smith 
22539566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2255b1a666ecSBarry Smith }
2256b1a666ecSBarry Smith 
2257d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2258d71ae5a4SJacob Faibussowitsch {
225947f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2260a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
226147f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
226247f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
226347f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
226447f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
226547f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
226647f7623dSRémi Lacroix   PetscReal   *work;
226747f7623dSRémi Lacroix 
226847f7623dSRémi Lacroix   PetscFunctionBegin;
22699566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22709566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2271857cbf51SRichard Tran Mills   if (type == NORM_2) {
227247f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
227347f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227447f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227547f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
227647f7623dSRémi Lacroix           a_val++;
227747f7623dSRémi Lacroix         }
227847f7623dSRémi Lacroix       }
227947f7623dSRémi Lacroix     }
228047f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
228147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228347f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
228447f7623dSRémi Lacroix           b_val++;
228547f7623dSRémi Lacroix         }
228647f7623dSRémi Lacroix       }
228747f7623dSRémi Lacroix     }
2288857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
228947f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
229047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229247f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
229347f7623dSRémi Lacroix           a_val++;
229447f7623dSRémi Lacroix         }
229547f7623dSRémi Lacroix       }
229647f7623dSRémi Lacroix     }
229747f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229847f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229947f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230047f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
230147f7623dSRémi Lacroix           b_val++;
230247f7623dSRémi Lacroix         }
230347f7623dSRémi Lacroix       }
230447f7623dSRémi Lacroix     }
2305857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
230647f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
230747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230947f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
231047f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
231147f7623dSRémi Lacroix           a_val++;
231247f7623dSRémi Lacroix         }
231347f7623dSRémi Lacroix       }
231447f7623dSRémi Lacroix     }
231547f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
231647f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
231747f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
231847f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
231947f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
232047f7623dSRémi Lacroix           b_val++;
232147f7623dSRémi Lacroix         }
232247f7623dSRémi Lacroix       }
232347f7623dSRémi Lacroix     }
2324857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2325a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2326a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2327a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2328857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2329a873a8cdSSam Reynolds           a_val++;
2330a873a8cdSSam Reynolds         }
2331a873a8cdSSam Reynolds       }
2332a873a8cdSSam Reynolds     }
2333a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2334a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2335a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2336857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2337a873a8cdSSam Reynolds           b_val++;
2338a873a8cdSSam Reynolds         }
2339a873a8cdSSam Reynolds       }
2340a873a8cdSSam Reynolds     }
2341857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2342857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2343857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2344857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2345857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2346857cbf51SRichard Tran Mills           a_val++;
2347857cbf51SRichard Tran Mills         }
2348857cbf51SRichard Tran Mills       }
2349857cbf51SRichard Tran Mills     }
2350857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2351857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2352857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2353857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2354857cbf51SRichard Tran Mills           b_val++;
2355857cbf51SRichard Tran Mills         }
2356857cbf51SRichard Tran Mills       }
2357857cbf51SRichard Tran Mills     }
2358857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2359857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23601c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
236147f7623dSRémi Lacroix   } else {
23621c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
236347f7623dSRémi Lacroix   }
23649566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2365857cbf51SRichard Tran Mills   if (type == NORM_2) {
2366a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2367857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2368a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
236947f7623dSRémi Lacroix   }
23703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
237147f7623dSRémi Lacroix }
237247f7623dSRémi Lacroix 
2373d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2374d71ae5a4SJacob Faibussowitsch {
2375bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2376bbead8a2SBarry Smith 
2377bbead8a2SBarry Smith   PetscFunctionBegin;
23789566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23797b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23807b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23817b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2383bbead8a2SBarry Smith }
2384bbead8a2SBarry Smith 
2385d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2386d71ae5a4SJacob Faibussowitsch {
23877d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23886f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23897d68702bSBarry Smith 
23907d68702bSBarry Smith   PetscFunctionBegin;
23916f33a894SBarry Smith   if (!Y->preallocated) {
23929566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23936f33a894SBarry Smith   } else if (!aij->nz) {
2394b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23959566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2396b83222d8SBarry Smith     aij->nonew = nonew;
23977d68702bSBarry Smith   }
23989566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24007d68702bSBarry Smith }
24018c7482ecSBarry Smith 
2402d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2403d71ae5a4SJacob Faibussowitsch {
24043b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
24053b49f96aSBarry Smith 
24063b49f96aSBarry Smith   PetscFunctionBegin;
24075f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
24089566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
24093b49f96aSBarry Smith   if (d) {
24103b49f96aSBarry Smith     PetscInt rstart;
24119566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
24123b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
24133b49f96aSBarry Smith   }
24143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24153b49f96aSBarry Smith }
24163b49f96aSBarry Smith 
2417d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2418d71ae5a4SJacob Faibussowitsch {
2419a5b7ff6bSBarry Smith   PetscFunctionBegin;
2420a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2422a5b7ff6bSBarry Smith }
2423a5b7ff6bSBarry Smith 
242479bdfe76SSatish Balay /* -------------------------------------------------------------------*/
24253964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2426cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2427cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2428cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
242997304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24307c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24317c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2432f4259b30SLisandro Dalcin                                        NULL,
2433f4259b30SLisandro Dalcin                                        NULL,
2434f4259b30SLisandro Dalcin                                        NULL,
2435f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2436f4259b30SLisandro Dalcin                                        NULL,
2437f4259b30SLisandro Dalcin                                        NULL,
2438b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2439cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
244097304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24417fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2442cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2443cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2444cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
244597304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2446cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2447cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2448cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2449d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2450f4259b30SLisandro Dalcin                                        NULL,
2451f4259b30SLisandro Dalcin                                        NULL,
2452f4259b30SLisandro Dalcin                                        NULL,
2453f4259b30SLisandro Dalcin                                        NULL,
2454*26cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
2457a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2458f4259b30SLisandro Dalcin                                        NULL,
2459d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2460f4259b30SLisandro Dalcin                                        NULL,
2461f4259b30SLisandro Dalcin                                        NULL,
2462f4259b30SLisandro Dalcin                                        NULL,
2463f4259b30SLisandro Dalcin                                        NULL,
2464d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24657dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2466cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2467cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24683c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2469f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2470cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24717d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2472f4259b30SLisandro Dalcin                                        NULL,
24736f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2474f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2475f4259b30SLisandro Dalcin                                        NULL,
2476f4259b30SLisandro Dalcin                                        NULL,
2477f4259b30SLisandro Dalcin                                        NULL,
2478f4259b30SLisandro Dalcin                                        NULL,
247993dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2480f4259b30SLisandro Dalcin                                        NULL,
2481cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
248282094794SBarry Smith                                        MatPermute_MPIBAIJ,
2483cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24847dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2485f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2486f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2487f4259b30SLisandro Dalcin                                        NULL,
2488f4259b30SLisandro Dalcin                                        NULL,
2489f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2495f4259b30SLisandro Dalcin                                        NULL,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2500f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
25085bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2509f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
25272726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        /*104*/ NULL,
253099cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25318c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2532f4259b30SLisandro Dalcin                                        NULL,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
2537f4259b30SLisandro Dalcin                                        NULL,
25383b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2539d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2540f4259b30SLisandro Dalcin                                        NULL,
25414683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2542f4259b30SLisandro Dalcin                                        NULL,
2543f4259b30SLisandro Dalcin                                        NULL,
2544f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2545f4259b30SLisandro Dalcin                                        NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        NULL,
2548e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2549f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2550a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25513964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2552f4259b30SLisandro Dalcin                                        NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2555f4259b30SLisandro Dalcin                                        NULL,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        NULL,
2558f4259b30SLisandro Dalcin                                        NULL,
2559f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562f4259b30SLisandro Dalcin                                        NULL,
2563f4259b30SLisandro Dalcin                                        NULL,
256446533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
2567bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2568f4259b30SLisandro Dalcin                                        NULL,
2569d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2570d70f29a3SPierre Jolivet                                        NULL,
2571d70f29a3SPierre Jolivet                                        NULL,
257299a7f59eSMark Adams                                        NULL,
257399a7f59eSMark Adams                                        NULL,
25747fb60732SBarry Smith                                        NULL,
2575dec0b466SHong Zhang                                        /*150*/ NULL,
2576dec0b466SHong Zhang                                        NULL};
257779bdfe76SSatish Balay 
2578cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2579c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2580d94109b8SHong Zhang 
2581d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2582d71ae5a4SJacob Faibussowitsch {
2583b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2584f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2585f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2586f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2587d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25883bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2589aac34f13SBarry Smith 
2590aac34f13SBarry Smith   PetscFunctionBegin;
25919566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25929566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2596d0f46423SBarry Smith   m      = B->rmap->n / bs;
2597d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2598d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2599d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2600b8d659d7SLisandro Dalcin 
26015f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
26029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2603aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2604cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26055f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2606b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
260737cd3c0dSBarry Smith     dlen   = 0;
260837cd3c0dSBarry Smith     olen   = 0;
2609cf12db73SBarry Smith     JJ     = jj + ii[i];
2610b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
261137cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
261237cd3c0dSBarry Smith       else dlen++;
2613aac34f13SBarry Smith       JJ++;
2614aac34f13SBarry Smith     }
261537cd3c0dSBarry Smith     d_nnz[i] = dlen;
261637cd3c0dSBarry Smith     o_nnz[i] = olen;
2617aac34f13SBarry Smith   }
26189566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26199566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2620aac34f13SBarry Smith 
2621b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
262248a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2623b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2624b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2625cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2626cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2627bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2628cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26299566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26303adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26313adadaf3SJed Brown       PetscInt j;
26323adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26333adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26349566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26353adadaf3SJed Brown       }
26363adadaf3SJed Brown     }
2637aac34f13SBarry Smith   }
2638aac34f13SBarry Smith 
26399566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26403bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26413bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26429566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26443bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26453bd0feecSPierre Jolivet 
26469566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2648aac34f13SBarry Smith }
2649aac34f13SBarry Smith 
2650aac34f13SBarry Smith /*@C
265111a5261eSBarry Smith    MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2652aac34f13SBarry Smith 
2653d083f849SBarry Smith    Collective
2654aac34f13SBarry Smith 
2655aac34f13SBarry Smith    Input Parameters:
26561c4f3114SJed Brown +  B - the matrix
2657dfb205c3SBarry Smith .  bs - the block size
2658aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2659aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2660aac34f13SBarry Smith -  v - optional values in the matrix
2661aac34f13SBarry Smith 
2662664954b6SBarry Smith    Level: advanced
2663aac34f13SBarry Smith 
266495452b02SPatrick Sanan    Notes:
266511a5261eSBarry Smith     The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
266611a5261eSBarry Smith    may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26673adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
266811a5261eSBarry Smith    `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26693adadaf3SJed Brown    block column and the second index is over columns within a block.
26703adadaf3SJed Brown 
2671664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2672664954b6SBarry Smith 
267367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ`
2674aac34f13SBarry Smith @*/
2675d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2676d71ae5a4SJacob Faibussowitsch {
2677aac34f13SBarry Smith   PetscFunctionBegin;
26786ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26796ba663aaSJed Brown   PetscValidType(B, 1);
26806ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2681cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2683aac34f13SBarry Smith }
2684aac34f13SBarry Smith 
2685d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2686d71ae5a4SJacob Faibussowitsch {
2687a23d5eceSKris Buschelman   Mat_MPIBAIJ *b;
2688535b19f3SBarry Smith   PetscInt     i;
26895d2a9ed1SStefano Zampini   PetscMPIInt  size;
2690a23d5eceSKris Buschelman 
2691a23d5eceSKris Buschelman   PetscFunctionBegin;
26929566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
26939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2696899cda47SBarry Smith 
2697a23d5eceSKris Buschelman   if (d_nnz) {
2698ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2699a23d5eceSKris Buschelman   }
2700a23d5eceSKris Buschelman   if (o_nnz) {
2701ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2702a23d5eceSKris Buschelman   }
2703a23d5eceSKris Buschelman 
2704a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ *)B->data;
2705a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2706d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2707d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2708d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2709d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2710a23d5eceSKris Buschelman 
2711ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2712d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2713d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2714d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2715d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2716a23d5eceSKris Buschelman 
2717cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2718eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2719cb7b82ddSBarry Smith #else
27209566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2721cb7b82ddSBarry Smith #endif
27229566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27239566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27249566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2725cb7b82ddSBarry Smith 
2726cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
27279566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
27289566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27299566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27309566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27319566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2732cb7b82ddSBarry Smith 
2733526dfc15SBarry Smith   if (!B->preallocated) {
27349566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27359566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27369566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A, MATSEQBAIJ));
27379566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
2738526dfc15SBarry Smith   }
2739a23d5eceSKris Buschelman 
27409566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27419566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2742526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2743cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2744cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2746a23d5eceSKris Buschelman }
2747a23d5eceSKris Buschelman 
27487087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27497087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27505bf65638SKris Buschelman 
2751d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2752d71ae5a4SJacob Faibussowitsch {
275382094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
275482094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
275582094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
275682094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
275782094794SBarry Smith 
275882094794SBarry Smith   PetscFunctionBegin;
27599566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
276082094794SBarry Smith   ii[0] = 0;
276182094794SBarry Smith   for (i = 0; i < M; i++) {
276208401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
276308401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
276482094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27655ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27665ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27679371c9d4SSatish Balay       if (jd[j] == i) {
27689371c9d4SSatish Balay         ii[i + 1]--;
27699371c9d4SSatish Balay         break;
27709371c9d4SSatish Balay       }
27715ee9ba1cSJed Brown     }
277282094794SBarry Smith   }
27739566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
277482094794SBarry Smith   cnt = 0;
277582094794SBarry Smith   for (i = 0; i < M; i++) {
277682094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
277782094794SBarry Smith       if (garray[jo[j]] > rstart) break;
277882094794SBarry Smith       jj[cnt++] = garray[jo[j]];
277982094794SBarry Smith     }
278082094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2781ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
278282094794SBarry Smith     }
2783ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
278482094794SBarry Smith   }
27859566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278782094794SBarry Smith }
278882094794SBarry Smith 
2789c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
279062471d69SBarry Smith 
2791cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2792b2573a8aSBarry Smith 
2793d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2794d71ae5a4SJacob Faibussowitsch {
279562471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
279685a69837SSatish Balay   Mat_MPIAIJ  *b;
27975f80ce2aSJacob Faibussowitsch   Mat          B;
279862471d69SBarry Smith 
279962471d69SBarry Smith   PetscFunctionBegin;
28005f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
280162471d69SBarry Smith 
28020f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28030f6d62edSLisandro Dalcin     B = *newmat;
28040f6d62edSLisandro Dalcin   } else {
28059566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28069566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28079566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28089566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28099566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28109566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28110f6d62edSLisandro Dalcin   }
281262471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
281362471d69SBarry Smith 
28140f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28159566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28169566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28170f6d62edSLisandro Dalcin   } else {
2818539ef8ebSBarry Smith     PetscBool3 sym = A->symmetric, hermitian = A->hermitian, structurally_symmetric = A->structurally_symmetric, spd = A->spd;
28199566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28209566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28219566063dSJacob Faibussowitsch     PetscCall(MatDisAssemble_MPIBAIJ(A));
28229566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28239566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28249566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
28259566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
2826539ef8ebSBarry Smith     A->symmetric              = sym;
2827539ef8ebSBarry Smith     A->hermitian              = hermitian;
2828539ef8ebSBarry Smith     A->structurally_symmetric = structurally_symmetric;
2829539ef8ebSBarry Smith     A->spd                    = spd;
28300f6d62edSLisandro Dalcin   }
28319566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28330f6d62edSLisandro Dalcin 
2834511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28359566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
283662471d69SBarry Smith   } else {
283762471d69SBarry Smith     *newmat = B;
283862471d69SBarry Smith   }
28393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
284062471d69SBarry Smith }
284162471d69SBarry Smith 
28420bad9183SKris Buschelman /*MC
2843fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28440bad9183SKris Buschelman 
28450bad9183SKris Buschelman    Options Database Keys:
284611a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28478c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28486679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
284967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28500bad9183SKris Buschelman 
28510bad9183SKris Buschelman    Level: beginner
28520cd7f59aSBarry Smith 
285311a5261eSBarry Smith    Note:
285411a5261eSBarry Smith     `MatSetOptions`(,`MAT_STRUCTURE_ONLY`,`PETSC_TRUE`) may be called for this matrix type. In this no
285511a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28560bad9183SKris Buschelman 
285767be906fSBarry Smith .seealso: `Mat`, MATBAIJ`, MATSEQBAIJ`, `MatCreateBAIJ`
28580bad9183SKris Buschelman M*/
28590bad9183SKris Buschelman 
2860cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2861c0cdd4a1SDahai Guo 
2862d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2863d71ae5a4SJacob Faibussowitsch {
2864273d9f13SBarry Smith   Mat_MPIBAIJ *b;
286594ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2866273d9f13SBarry Smith 
2867273d9f13SBarry Smith   PetscFunctionBegin;
28684dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
286982502324SSatish Balay   B->data = (void *)b;
287082502324SSatish Balay 
28719566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps)));
2872273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2873273d9f13SBarry Smith 
2874273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28759566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28769566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2877273d9f13SBarry Smith 
2878273d9f13SBarry Smith   /* build local table of row and column ownerships */
28799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2880273d9f13SBarry Smith 
2881273d9f13SBarry Smith   /* build cache for off array entries formed */
28829566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
288326fbe8dcSKarl Rupp 
2884273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28850298fd71SBarry Smith   b->colmap      = NULL;
28860298fd71SBarry Smith   b->garray      = NULL;
2887273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2888273d9f13SBarry Smith 
2889273d9f13SBarry Smith   /* stuff used in block assembly */
2890f4259b30SLisandro Dalcin   b->barray = NULL;
2891273d9f13SBarry Smith 
2892273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2893f4259b30SLisandro Dalcin   b->lvec  = NULL;
2894f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2895273d9f13SBarry Smith 
2896273d9f13SBarry Smith   /* stuff for MatGetRow() */
2897f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2898f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2899273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2900273d9f13SBarry Smith 
2901273d9f13SBarry Smith   /* hash table stuff */
2902f4259b30SLisandro Dalcin   b->ht           = NULL;
2903f4259b30SLisandro Dalcin   b->hd           = NULL;
2904273d9f13SBarry Smith   b->ht_size      = 0;
2905273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2906273d9f13SBarry Smith   b->ht_fact      = 0;
2907273d9f13SBarry Smith   b->ht_total_ct  = 0;
2908273d9f13SBarry Smith   b->ht_insert_ct = 0;
2909273d9f13SBarry Smith 
29107dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29117a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29127a868f3eSHong Zhang 
29139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29167ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29187ea3e4caSstefano_zampini #endif
29199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29209566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29269566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
292794ae4db5SBarry Smith 
2928d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29299566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
293094ae4db5SBarry Smith   if (flg) {
293194ae4db5SBarry Smith     PetscReal fact = 1.39;
29329566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29339566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
293494ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29359566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29369566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
293794ae4db5SBarry Smith   }
2938d0609cedSBarry Smith   PetscOptionsEnd();
29393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2940273d9f13SBarry Smith }
2941273d9f13SBarry Smith 
2942209238afSKris Buschelman /*MC
2943002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2944209238afSKris Buschelman 
294511a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
294611a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2947209238afSKris Buschelman 
2948209238afSKris Buschelman    Options Database Keys:
294911a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2950209238afSKris Buschelman 
2951209238afSKris Buschelman   Level: beginner
2952209238afSKris Buschelman 
295367be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2954209238afSKris Buschelman M*/
2955209238afSKris Buschelman 
2956273d9f13SBarry Smith /*@C
295711a5261eSBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
295867be906fSBarry Smith    (block compressed row).
2959273d9f13SBarry Smith 
2960c3339decSBarry Smith    Collective
2961273d9f13SBarry Smith 
2962273d9f13SBarry Smith    Input Parameters:
29631c4f3114SJed Brown +  B - the matrix
296411a5261eSBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
296567be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2966273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2967273d9f13SBarry Smith            submatrix  (same for all local rows)
2968273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2969273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
297067be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
297195742e49SBarry Smith            set it even if it is zero.
2972273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2973273d9f13SBarry Smith            submatrix (same for all local rows).
2974273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2975273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
297667be906fSBarry Smith            each block row) or `NULL`.
2977273d9f13SBarry Smith 
297849a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2979273d9f13SBarry Smith 
2980273d9f13SBarry Smith    Options Database Keys:
29818c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
298267b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
2983273d9f13SBarry Smith 
298467be906fSBarry Smith    Level: intermediate
298567be906fSBarry Smith 
2986273d9f13SBarry Smith    Notes:
298767be906fSBarry Smith    For good matrix assembly performance
298867be906fSBarry Smith    the user should preallocate the matrix storage by setting the parameters
298967be906fSBarry Smith    `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
299067be906fSBarry Smith    performance can be increased by more than a factor of 50.
299167be906fSBarry Smith 
299211a5261eSBarry Smith    If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
2993273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2994273d9f13SBarry Smith 
2995273d9f13SBarry Smith    Storage Information:
2996273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2997273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2998273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2999273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3000273d9f13SBarry Smith 
3001273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
300267be906fSBarry Smith    the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
300367be906fSBarry Smith    `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3004273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
300567be906fSBarry Smith    off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3006273d9f13SBarry Smith 
3007273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3008273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3009273d9f13SBarry Smith 
3010273d9f13SBarry Smith .vb
3011273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3012a4b1a0f6SJed Brown           --------------------------
3013273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3014273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3015273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3016a4b1a0f6SJed Brown           --------------------------
3017273d9f13SBarry Smith .ve
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3020273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3021273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
302211a5261eSBarry Smith    stored simply in the `MATSEQBAIJ` format for compressed row storage.
3023273d9f13SBarry Smith 
302467be906fSBarry Smith    Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
302567be906fSBarry Smith    and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3026273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
302767be906fSBarry Smith    one expects `d_nz` >> `o_nz`.   For large problems you MUST preallocate memory
3028273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3029273d9f13SBarry Smith    matrices.
3030273d9f13SBarry Smith 
303111a5261eSBarry Smith    You can call `MatGetInfo()` to get information on how effective the preallocation was;
3032aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
303367be906fSBarry Smith    You can also run with the option `-info` and look for messages with the string
3034aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3035aa95bbe8SBarry Smith 
303667be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3037273d9f13SBarry Smith @*/
3038d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3039d71ae5a4SJacob Faibussowitsch {
3040273d9f13SBarry Smith   PetscFunctionBegin;
30416ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30426ba663aaSJed Brown   PetscValidType(B, 1);
30436ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3044cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30453ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3046273d9f13SBarry Smith }
3047273d9f13SBarry Smith 
304879bdfe76SSatish Balay /*@C
304911a5261eSBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
305067be906fSBarry Smith    (block compressed row).
305179bdfe76SSatish Balay 
3052d083f849SBarry Smith    Collective
3053db81eaa0SLois Curfman McInnes 
305479bdfe76SSatish Balay    Input Parameters:
3055db81eaa0SLois Curfman McInnes +  comm - MPI communicator
305611a5261eSBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
305711a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
305811a5261eSBarry Smith .  m - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
305992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
306092e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
306111a5261eSBarry Smith .  n - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
306292e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
306392e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
306411a5261eSBarry Smith .  M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
306511a5261eSBarry Smith .  N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
306647a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
306779bdfe76SSatish Balay            submatrix  (same for all local rows)
306847a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
306992e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30700298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
307195742e49SBarry Smith            and set it even if it is zero.
307247a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
307379bdfe76SSatish Balay            submatrix (same for all local rows).
307447a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
307592e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30760298fd71SBarry Smith            each block row) or NULL.
307779bdfe76SSatish Balay 
307879bdfe76SSatish Balay    Output Parameter:
307979bdfe76SSatish Balay .  A - the matrix
308079bdfe76SSatish Balay 
3081db81eaa0SLois Curfman McInnes    Options Database Keys:
30828c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
308367b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
30843ffaccefSLois Curfman McInnes 
308567be906fSBarry Smith    Level: intermediate
308667be906fSBarry Smith 
308767be906fSBarry Smith    Notes:
308867be906fSBarry Smith    For good matrix assembly performance
308967be906fSBarry Smith    the user should preallocate the matrix storage by setting the parameters
309067be906fSBarry Smith    `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
309167be906fSBarry Smith    performance can be increased by more than a factor of 50.
309267be906fSBarry Smith 
309311a5261eSBarry Smith    It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
3094f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
309511a5261eSBarry Smith    [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
3096175b88e8SBarry Smith 
309749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
309849a6f317SBarry Smith 
309947a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
310047a75d0bSBarry Smith 
310179bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
310279bdfe76SSatish Balay    (possibly both).
310379bdfe76SSatish Balay 
310411a5261eSBarry Smith    If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3105be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3106be79a94dSBarry Smith 
310779bdfe76SSatish Balay    Storage Information:
310879bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
310979bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
311079bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
311179bdfe76SSatish Balay    local matrix (a rectangular submatrix).
311279bdfe76SSatish Balay 
311379bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
311479bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
311567be906fSBarry Smith    `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
311679bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
311767be906fSBarry Smith    off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
311879bdfe76SSatish Balay 
311979bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
312079bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
312179bdfe76SSatish Balay 
3122db81eaa0SLois Curfman McInnes .vb
3123db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3124a4b1a0f6SJed Brown           --------------------------
3125db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3126db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3127db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3128a4b1a0f6SJed Brown           --------------------------
3129db81eaa0SLois Curfman McInnes .ve
313079bdfe76SSatish Balay 
313179bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
313279bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
313379bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
313411a5261eSBarry Smith    stored simply in the `MATSEQBAIJ` format for compressed row storage.
313579bdfe76SSatish Balay 
313667be906fSBarry Smith    Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
313767be906fSBarry Smith    and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
313879bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
313967be906fSBarry Smith    one expects `d_nz` >> `o_nz`.   For large problems you MUST preallocate memory
314092e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31416da5968aSLois Curfman McInnes    matrices.
314279bdfe76SSatish Balay 
314367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
314479bdfe76SSatish Balay @*/
3145d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3146d71ae5a4SJacob Faibussowitsch {
3147b24ad042SBarry Smith   PetscMPIInt size;
314879bdfe76SSatish Balay 
3149d64ed03dSBarry Smith   PetscFunctionBegin;
31509566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31519566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3153273d9f13SBarry Smith   if (size > 1) {
31549566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31559566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3156273d9f13SBarry Smith   } else {
31579566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31589566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31593914022bSBarry Smith   }
31603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
316179bdfe76SSatish Balay }
3162026e39d0SSatish Balay 
3163d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3164d71ae5a4SJacob Faibussowitsch {
31650ac07820SSatish Balay   Mat          mat;
31660ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3167b24ad042SBarry Smith   PetscInt     len = 0;
31680ac07820SSatish Balay 
3169d64ed03dSBarry Smith   PetscFunctionBegin;
3170f4259b30SLisandro Dalcin   *newmat = NULL;
31719566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31729566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31739566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31747fff6886SHong Zhang 
3175d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3176273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
31770ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
31787fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
31797fff6886SHong Zhang 
3180273d9f13SBarry Smith   a             = (Mat_MPIBAIJ *)mat->data;
3181d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
31820ac07820SSatish Balay   a->bs2        = oldmat->bs2;
31830ac07820SSatish Balay   a->mbs        = oldmat->mbs;
31840ac07820SSatish Balay   a->nbs        = oldmat->nbs;
31850ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
31860ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
31870ac07820SSatish Balay 
31889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
31899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3190899cda47SBarry Smith 
31910ac07820SSatish Balay   a->size         = oldmat->size;
31920ac07820SSatish Balay   a->rank         = oldmat->rank;
3193aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3194aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3195f4259b30SLisandro Dalcin   a->rowindices   = NULL;
3196f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
31970ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
3198f4259b30SLisandro Dalcin   a->barray       = NULL;
3199899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3200899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3201899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3202899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32030ac07820SSatish Balay 
3204133cdb44SSatish Balay   /* hash table stuff */
3205f4259b30SLisandro Dalcin   a->ht           = NULL;
3206f4259b30SLisandro Dalcin   a->hd           = NULL;
3207133cdb44SSatish Balay   a->ht_size      = 0;
3208133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
320925fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3210133cdb44SSatish Balay   a->ht_total_ct  = 0;
3211133cdb44SSatish Balay   a->ht_insert_ct = 0;
3212133cdb44SSatish Balay 
32139566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32140ac07820SSatish Balay   if (oldmat->colmap) {
3215aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3216eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
321748e59246SSatish Balay #else
32189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32199566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
322048e59246SSatish Balay #endif
3221f4259b30SLisandro Dalcin   } else a->colmap = NULL;
32224beb1cfeSHong Zhang 
32230ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
32249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
32259566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3226f4259b30SLisandro Dalcin   } else a->garray = NULL;
32270ac07820SSatish Balay 
32289566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32299566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32309566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32317fff6886SHong Zhang 
32329566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32339566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
32349566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32350ac07820SSatish Balay   *newmat = mat;
32363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32370ac07820SSatish Balay }
323857b952d6SSatish Balay 
3239618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3241d71ae5a4SJacob Faibussowitsch {
3242b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3243b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3244b51a4376SLisandro Dalcin   PetscScalar *matvals;
3245b51a4376SLisandro Dalcin 
3246b51a4376SLisandro Dalcin   PetscFunctionBegin;
32479566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3248b51a4376SLisandro Dalcin 
3249b51a4376SLisandro Dalcin   /* read in matrix header */
32509566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32515f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32529371c9d4SSatish Balay   M  = header[1];
32539371c9d4SSatish Balay   N  = header[2];
32549371c9d4SSatish Balay   nz = header[3];
32555f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32565f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32575f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3258b51a4376SLisandro Dalcin 
3259b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32609566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3261618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3262618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3263618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3264b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3265b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3266b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3269b51a4376SLisandro Dalcin 
3270b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32719566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32725f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32739566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32749566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32779371c9d4SSatish Balay   mbs = m / bs;
32789371c9d4SSatish Balay   nbs = n / bs;
3279b51a4376SLisandro Dalcin 
3280b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32829566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32839371c9d4SSatish Balay   rowidxs[0] = 0;
32849371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
32851c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32865f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3287b51a4376SLisandro Dalcin 
3288b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32909566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
32919566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3292b51a4376SLisandro Dalcin 
3293b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3294b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3295b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3296618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3297b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3298b51a4376SLisandro Dalcin 
32999566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33009566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33019566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33029566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3303b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33049566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33059566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3306618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3307618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3308618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3309618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3310618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3311618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3312618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3313b51a4376SLisandro Dalcin             } else {
33149566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3315b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3316b51a4376SLisandro Dalcin             }
3317b51a4376SLisandro Dalcin           }
3318618cc2edSLisandro Dalcin         }
3319618cc2edSLisandro Dalcin       }
3320618cc2edSLisandro Dalcin     }
33219566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33229566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33239566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33249566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33259566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3326b51a4376SLisandro Dalcin   }
3327b51a4376SLisandro Dalcin 
3328b51a4376SLisandro Dalcin   /* store matrix values */
3329b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3330b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33319566063dSJacob Faibussowitsch     PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES));
3332b51a4376SLisandro Dalcin   }
3333b51a4376SLisandro Dalcin 
33349566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3339b51a4376SLisandro Dalcin }
3340b51a4376SLisandro Dalcin 
3341d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3342d71ae5a4SJacob Faibussowitsch {
33437f489da9SVaclav Hapla   PetscBool isbinary;
33444683f7a4SShri Abhyankar 
33454683f7a4SShri Abhyankar   PetscFunctionBegin;
33469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33475f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33489566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33504683f7a4SShri Abhyankar }
33514683f7a4SShri Abhyankar 
3352133cdb44SSatish Balay /*@
335311a5261eSBarry Smith    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3354133cdb44SSatish Balay 
3355133cdb44SSatish Balay    Input Parameters:
3356a2b725a8SWilliam Gropp +  mat  - the matrix
3357a2b725a8SWilliam Gropp -  fact - factor
3358133cdb44SSatish Balay 
335911a5261eSBarry Smith    Options Database Key:
336011a5261eSBarry Smith .  -mat_use_hash_table <fact> - provide the factor
3361fee21e36SBarry Smith 
33628c890885SBarry Smith    Level: advanced
33638c890885SBarry Smith 
336467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3365133cdb44SSatish Balay @*/
3366d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3367d71ae5a4SJacob Faibussowitsch {
33685bf65638SKris Buschelman   PetscFunctionBegin;
3369cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33715bf65638SKris Buschelman }
33725bf65638SKris Buschelman 
3373d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3374d71ae5a4SJacob Faibussowitsch {
337525fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3376133cdb44SSatish Balay 
3377133cdb44SSatish Balay   PetscFunctionBegin;
3378133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3379133cdb44SSatish Balay   baij->ht_fact = fact;
33803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3381133cdb44SSatish Balay }
3382f2a5309cSSatish Balay 
3383d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3384d71ae5a4SJacob Faibussowitsch {
3385f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3386ab4d48faSStefano Zampini   PetscBool    flg;
33875fd66863SKarl Rupp 
3388f2a5309cSSatish Balay   PetscFunctionBegin;
33899566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33905f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
339121e72a00SBarry Smith   if (Ad) *Ad = a->A;
339221e72a00SBarry Smith   if (Ao) *Ao = a->B;
339321e72a00SBarry Smith   if (colmap) *colmap = a->garray;
33943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3395f2a5309cSSatish Balay }
339685535b8eSBarry Smith 
339785535b8eSBarry Smith /*
339885535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
339985535b8eSBarry Smith */
340085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
340185535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
340285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
340385535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
340485535b8eSBarry Smith #endif
340585535b8eSBarry Smith 
340685535b8eSBarry Smith /*@C
340711a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
340885535b8eSBarry Smith 
3409c3339decSBarry Smith   Collective
341085535b8eSBarry Smith 
341185535b8eSBarry Smith   Input Parameters:
341285535b8eSBarry Smith + mat - the matrix
341385535b8eSBarry Smith . min - number of input rows
341485535b8eSBarry Smith . im - input rows
341585535b8eSBarry Smith . nin - number of input columns
341685535b8eSBarry Smith . in - input columns
341785535b8eSBarry Smith . v - numerical values input
341811a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
341985535b8eSBarry Smith 
342011a5261eSBarry Smith   Developer Note:
342111a5261eSBarry Smith     This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
342285535b8eSBarry Smith 
342385535b8eSBarry Smith   Level: advanced
342485535b8eSBarry Smith 
342567be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
342685535b8eSBarry Smith @*/
3427d71ae5a4SJacob Faibussowitsch PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3428d71ae5a4SJacob Faibussowitsch {
342985535b8eSBarry Smith   /* convert input arguments to C version */
343085535b8eSBarry Smith   Mat        mat = *matin;
343185535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
343285535b8eSBarry Smith   InsertMode addv = *addvin;
343385535b8eSBarry Smith 
343485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
343585535b8eSBarry Smith   const MatScalar *value;
343685535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3437ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
343885535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
343985535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3440d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
344185535b8eSBarry Smith 
344285535b8eSBarry Smith   PetscFunctionBegin;
344385535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
344426fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34455f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34465f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
344785535b8eSBarry Smith   if (mat->assembled) {
344885535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
344985535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
345085535b8eSBarry Smith   }
34519566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
345285535b8eSBarry Smith 
345385535b8eSBarry Smith   if (!barray) {
34549566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
345585535b8eSBarry Smith     baij->barray = barray;
345685535b8eSBarry Smith   }
345785535b8eSBarry Smith 
345826fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
345926fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
346026fbe8dcSKarl Rupp 
346185535b8eSBarry Smith   for (i = 0; i < m; i++) {
346285535b8eSBarry Smith     if (im[i] < 0) continue;
34636bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
346485535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
346585535b8eSBarry Smith       row = im[i] - rstart;
346685535b8eSBarry Smith       for (j = 0; j < n; j++) {
346785535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
346885535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
346985535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
347085535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
347185535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
347285535b8eSBarry Smith         } else { /* Here a copy is required */
347385535b8eSBarry Smith           if (roworiented) {
347485535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
347585535b8eSBarry Smith           } else {
347685535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
347785535b8eSBarry Smith           }
347885535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3479ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
348085535b8eSBarry Smith           }
348185535b8eSBarry Smith           barray -= bs2;
348285535b8eSBarry Smith         }
348385535b8eSBarry Smith 
348485535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
348585535b8eSBarry Smith           col = in[j] - cstart;
34869566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3487f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3488f7d195e4SLawrence Mitchell           continue;
3489f7d195e4SLawrence Mitchell         } else {
3490f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
349185535b8eSBarry Smith           if (mat->was_assembled) {
349248a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
349385535b8eSBarry Smith 
349485535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
349585535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
34969371c9d4SSatish Balay             {
34979371c9d4SSatish Balay               PetscInt data;
3498eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
349908401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350085535b8eSBarry Smith             }
350185535b8eSBarry Smith   #else
350208401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350385535b8eSBarry Smith   #endif
350485535b8eSBarry Smith #endif
350585535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3506eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
350785535b8eSBarry Smith             col = (col - 1) / bs;
350885535b8eSBarry Smith #else
350985535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
351085535b8eSBarry Smith #endif
351185535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
35129566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
351385535b8eSBarry Smith               col = in[j];
351485535b8eSBarry Smith             }
351526fbe8dcSKarl Rupp           } else col = in[j];
35169566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
351785535b8eSBarry Smith         }
351885535b8eSBarry Smith       }
351985535b8eSBarry Smith     } else {
352085535b8eSBarry Smith       if (!baij->donotstash) {
352185535b8eSBarry Smith         if (roworiented) {
35229566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
352385535b8eSBarry Smith         } else {
35249566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
352585535b8eSBarry Smith         }
352685535b8eSBarry Smith       }
352785535b8eSBarry Smith     }
352885535b8eSBarry Smith   }
352985535b8eSBarry Smith 
353085535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35319566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
353385535b8eSBarry Smith }
3534dfb205c3SBarry Smith 
3535dfb205c3SBarry Smith /*@
353611a5261eSBarry Smith      MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block
3537dfb205c3SBarry Smith          CSR format the local rows.
3538dfb205c3SBarry Smith 
3539d083f849SBarry Smith    Collective
3540dfb205c3SBarry Smith 
3541dfb205c3SBarry Smith    Input Parameters:
3542dfb205c3SBarry Smith +  comm - MPI communicator
3543dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
354411a5261eSBarry Smith .  m - number of local rows (Cannot be `PETSC_DECIDE`)
3545dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
354611a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
3547dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
354811a5261eSBarry Smith .  M - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
354911a5261eSBarry Smith .  N - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
3550483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3551dfb205c3SBarry Smith .   j - column indices
3552dfb205c3SBarry Smith -   a - matrix values
3553dfb205c3SBarry Smith 
3554dfb205c3SBarry Smith    Output Parameter:
3555dfb205c3SBarry Smith .   mat - the matrix
3556dfb205c3SBarry Smith 
3557dfb205c3SBarry Smith    Level: intermediate
3558dfb205c3SBarry Smith 
3559dfb205c3SBarry Smith    Notes:
356067be906fSBarry Smith        The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3561dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
356211a5261eSBarry Smith      called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3563dfb205c3SBarry Smith 
35643adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35653adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35663adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35673adadaf3SJed Brown      with column-major ordering within blocks.
35683adadaf3SJed Brown 
356967be906fSBarry Smith        The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array.
3570dfb205c3SBarry Smith 
357167be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
3572db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3573dfb205c3SBarry Smith @*/
3574d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3575d71ae5a4SJacob Faibussowitsch {
3576dfb205c3SBarry Smith   PetscFunctionBegin;
35775f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35785f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35799566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35809566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35819566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35829566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35839566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35849566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35859566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35869566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
35873ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3588dfb205c3SBarry Smith }
3589e561ad89SHong Zhang 
3590d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3591d71ae5a4SJacob Faibussowitsch {
3592bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3593bd153df0SHong Zhang   PetscInt    *indx;
3594bd153df0SHong Zhang   PetscScalar *values;
3595e561ad89SHong Zhang 
3596e561ad89SHong Zhang   PetscFunctionBegin;
35979566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3598bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3599bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36002c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3601bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
360277f764caSHong Zhang     PetscMPIInt  rank, size;
3603e561ad89SHong Zhang 
36049566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36059371c9d4SSatish Balay     mbs = m / bs;
36069371c9d4SSatish Balay     Nbs = N / cbs;
360748a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3608da91a574SPierre Jolivet     nbs = n / cbs;
3609e561ad89SHong Zhang 
36109566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3611d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
361277f764caSHong Zhang 
36139566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36149566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
361577f764caSHong Zhang     if (rank == size - 1) {
361677f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36175f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
361877f764caSHong Zhang     }
361977f764caSHong Zhang 
3620d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3621bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36229566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3623647a6520SHong Zhang       nnz = nnz / bs;
3624647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36259566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36269566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3627e561ad89SHong Zhang     }
36289566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3629e561ad89SHong Zhang 
36309566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36319566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36329566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36339566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36349566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36359566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3636d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36379566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3638e561ad89SHong Zhang   }
3639e561ad89SHong Zhang 
3640bd153df0SHong Zhang   /* numeric phase */
36419566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36429566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3643e561ad89SHong Zhang 
3644e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36459566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3646e561ad89SHong Zhang     Ii = i + rstart;
36479566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36489566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3649e561ad89SHong Zhang   }
36509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3653e561ad89SHong Zhang }
3654