xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 2920cce0f08e88ce102428b9df84f61867de9dc8)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
726cec326SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
826cec326SBarry Smith {
926cec326SBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1026cec326SBarry Smith 
1126cec326SBarry Smith   PetscFunctionBegin;
1226cec326SBarry Smith #if defined(PETSC_USE_LOG)
1326cec326SBarry Smith   PetscCall(PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N));
1426cec326SBarry Smith #endif
1526cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->stash));
1626cec326SBarry Smith   PetscCall(MatStashDestroy_Private(&mat->bstash));
1726cec326SBarry Smith   PetscCall(MatDestroy(&baij->A));
1826cec326SBarry Smith   PetscCall(MatDestroy(&baij->B));
1926cec326SBarry Smith #if defined(PETSC_USE_CTABLE)
2026cec326SBarry Smith   PetscCall(PetscHMapIDestroy(&baij->colmap));
2126cec326SBarry Smith #else
2226cec326SBarry Smith   PetscCall(PetscFree(baij->colmap));
2326cec326SBarry Smith #endif
2426cec326SBarry Smith   PetscCall(PetscFree(baij->garray));
2526cec326SBarry Smith   PetscCall(VecDestroy(&baij->lvec));
2626cec326SBarry Smith   PetscCall(VecScatterDestroy(&baij->Mvctx));
2726cec326SBarry Smith   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
2826cec326SBarry Smith   PetscCall(PetscFree(baij->barray));
2926cec326SBarry Smith   PetscCall(PetscFree2(baij->hd, baij->ht));
3026cec326SBarry Smith   PetscCall(PetscFree(baij->rangebs));
3126cec326SBarry Smith   PetscCall(PetscFree(mat->data));
3226cec326SBarry Smith 
3326cec326SBarry Smith   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
3426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
3526cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
3626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
3726cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
3826cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
3926cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
4026cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
4126cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
4226cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
4326cec326SBarry Smith #if defined(PETSC_HAVE_HYPRE)
4426cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
4526cec326SBarry Smith #endif
4626cec326SBarry Smith   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
4726cec326SBarry Smith   PetscFunctionReturn(PETSC_SUCCESS);
4826cec326SBarry Smith }
4926cec326SBarry Smith 
5026cec326SBarry Smith /* defines MatSetValues_MPI_Hash(), MatAssemblyBegin_MPI_Hash(), and  MatAssemblyEnd_MPI_Hash() */
5126cec326SBarry Smith #define TYPE BAIJ
5226cec326SBarry Smith #include "../src/mat/impls/aij/mpi/mpihashmat.h"
5326cec326SBarry Smith #undef TYPE
5426cec326SBarry Smith 
557ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
567ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
577ea3e4caSstefano_zampini #endif
587ea3e4caSstefano_zampini 
59d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[])
60d71ae5a4SJacob Faibussowitsch {
617843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
624e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
634e879edeSHong Zhang   PetscScalar       *va, *vv;
644e879edeSHong Zhang   Vec                vB, vA;
654e879edeSHong Zhang   const PetscScalar *vb;
667843d17aSBarry Smith 
677843d17aSBarry Smith   PetscFunctionBegin;
689566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
699566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
704e879edeSHong Zhang 
719566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
72985db425SBarry Smith   if (idx) {
734e879edeSHong Zhang     for (i = 0; i < m; i++) {
7426fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
7526fbe8dcSKarl Rupp     }
76985db425SBarry Smith   }
777843d17aSBarry Smith 
789566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
799566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
809566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
817843d17aSBarry Smith 
829566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
839566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
844e879edeSHong Zhang   for (i = 0; i < m; i++) {
8526fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
864e879edeSHong Zhang       vv[i] = vb[i];
874e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
884e879edeSHong Zhang     } else {
894e879edeSHong Zhang       vv[i] = va[i];
909371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
9126fbe8dcSKarl Rupp     }
927843d17aSBarry Smith   }
939566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
949566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
969566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
979566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
989566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1007843d17aSBarry Smith }
1017843d17aSBarry Smith 
102d71ae5a4SJacob Faibussowitsch PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat)
103d71ae5a4SJacob Faibussowitsch {
1047fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1057fc3c18eSBarry Smith 
1067fc3c18eSBarry Smith   PetscFunctionBegin;
1079566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
1089566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
1093ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1107fc3c18eSBarry Smith }
1117fc3c18eSBarry Smith 
112d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat)
113d71ae5a4SJacob Faibussowitsch {
1147fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
1157fc3c18eSBarry Smith 
1167fc3c18eSBarry Smith   PetscFunctionBegin;
1179566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
1189566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
1193ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1207fc3c18eSBarry Smith }
1217fc3c18eSBarry Smith 
122537820f0SBarry Smith /*
123537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
12457b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
125e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
12657b952d6SSatish Balay    length of colmap equals the global matrix length.
12757b952d6SSatish Balay */
128d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
129d71ae5a4SJacob Faibussowitsch {
13057b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
13157b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
132d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
13357b952d6SSatish Balay 
134d64ed03dSBarry Smith   PetscFunctionBegin;
135aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
136eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(baij->nbs, &baij->colmap));
137c76ffc5fSJacob Faibussowitsch   for (i = 0; i < nbs; i++) PetscCall(PetscHMapISet(baij->colmap, baij->garray[i] + 1, i * bs + 1));
13848e59246SSatish Balay #else
1399566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
140928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
14148e59246SSatish Balay #endif
1423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14357b952d6SSatish Balay }
14457b952d6SSatish Balay 
145d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
146a8f51744SPierre Jolivet   do { \
14780c1aa95SSatish Balay     brow = row / bs; \
1489371c9d4SSatish Balay     rp   = aj + ai[brow]; \
1499371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
1509371c9d4SSatish Balay     rmax = aimax[brow]; \
1519371c9d4SSatish Balay     nrow = ailen[brow]; \
15280c1aa95SSatish Balay     bcol = col / bs; \
1539371c9d4SSatish Balay     ridx = row % bs; \
1549371c9d4SSatish Balay     cidx = col % bs; \
1559371c9d4SSatish Balay     low  = 0; \
1569371c9d4SSatish Balay     high = nrow; \
157ab26458aSBarry Smith     while (high - low > 3) { \
158ab26458aSBarry Smith       t = (low + high) / 2; \
159ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
160ab26458aSBarry Smith       else low = t; \
161ab26458aSBarry Smith     } \
162ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
16380c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
16480c1aa95SSatish Balay       if (rp[_i] == bcol) { \
16580c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
166eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
167eada6651SSatish Balay         else *bap = value; \
168ac7a638eSSatish Balay         goto a_noinsert; \
16980c1aa95SSatish Balay       } \
17080c1aa95SSatish Balay     } \
17189280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1725f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
173fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
17480c1aa95SSatish Balay     N = nrow++ - 1; \
17580c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1769566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1779566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1789566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
17980c1aa95SSatish Balay     rp[_i]                          = bcol; \
18080c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
181ac7a638eSSatish Balay   a_noinsert:; \
18280c1aa95SSatish Balay     ailen[brow] = nrow; \
183a8f51744SPierre Jolivet   } while (0)
18457b952d6SSatish Balay 
185d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
186a8f51744SPierre Jolivet   do { \
187ac7a638eSSatish Balay     brow = row / bs; \
1889371c9d4SSatish Balay     rp   = bj + bi[brow]; \
1899371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
1909371c9d4SSatish Balay     rmax = bimax[brow]; \
1919371c9d4SSatish Balay     nrow = bilen[brow]; \
192ac7a638eSSatish Balay     bcol = col / bs; \
1939371c9d4SSatish Balay     ridx = row % bs; \
1949371c9d4SSatish Balay     cidx = col % bs; \
1959371c9d4SSatish Balay     low  = 0; \
1969371c9d4SSatish Balay     high = nrow; \
197ac7a638eSSatish Balay     while (high - low > 3) { \
198ac7a638eSSatish Balay       t = (low + high) / 2; \
199ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
200ac7a638eSSatish Balay       else low = t; \
201ac7a638eSSatish Balay     } \
202ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
203ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
204ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
205ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
206ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
207ac7a638eSSatish Balay         else *bap = value; \
208ac7a638eSSatish Balay         goto b_noinsert; \
209ac7a638eSSatish Balay       } \
210ac7a638eSSatish Balay     } \
21189280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
2125f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
213fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
214ac7a638eSSatish Balay     N = nrow++ - 1; \
215ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
2169566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
2179566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
2189566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
219ac7a638eSSatish Balay     rp[_i]                          = bcol; \
220ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
221ac7a638eSSatish Balay   b_noinsert:; \
222ac7a638eSSatish Balay     bilen[brow] = nrow; \
223a8f51744SPierre Jolivet   } while (0)
224ac7a638eSSatish Balay 
225d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
226d71ae5a4SJacob Faibussowitsch {
22757b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
22893fea6afSBarry Smith   MatScalar    value;
229ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
230b24ad042SBarry Smith   PetscInt     i, j, row, col;
231d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
232d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
233d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
23457b952d6SSatish Balay 
235eada6651SSatish Balay   /* Some Variables required in the macro */
23680c1aa95SSatish Balay   Mat          A     = baij->A;
23780c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
238b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
2393eda8832SBarry Smith   MatScalar   *aa = a->a;
240ac7a638eSSatish Balay 
241ac7a638eSSatish Balay   Mat          B     = baij->B;
242ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
243b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
2443eda8832SBarry Smith   MatScalar   *ba = b->a;
245ac7a638eSSatish Balay 
246b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
247b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
2483eda8832SBarry Smith   MatScalar *ap, *bap;
24980c1aa95SSatish Balay 
250d64ed03dSBarry Smith   PetscFunctionBegin;
25157b952d6SSatish Balay   for (i = 0; i < m; i++) {
2525ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2535f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
25457b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
25557b952d6SSatish Balay       row = im[i] - rstart_orig;
25657b952d6SSatish Balay       for (j = 0; j < n; j++) {
25757b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
25857b952d6SSatish Balay           col = in[j] - cstart_orig;
259db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
260db4deed7SKarl Rupp           else value = v[i + j * m];
261d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
262f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
263f7d195e4SLawrence Mitchell           continue;
264f7d195e4SLawrence Mitchell         } else {
265f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
26657b952d6SSatish Balay           if (mat->was_assembled) {
26748a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
268aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
269eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] / bs + 1, 0, &col));
270bba1ac68SSatish Balay             col = col - 1;
27148e59246SSatish Balay #else
272bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
27348e59246SSatish Balay #endif
274c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
2759566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2768295de27SSatish Balay               col = in[j];
2779bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2789bf004c3SSatish Balay               B     = baij->B;
2799bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2809371c9d4SSatish Balay               bimax = b->imax;
2819371c9d4SSatish Balay               bi    = b->i;
2829371c9d4SSatish Balay               bilen = b->ilen;
2839371c9d4SSatish Balay               bj    = b->j;
2849bf004c3SSatish Balay               ba    = b->a;
285f7d195e4SLawrence Mitchell             } else {
286f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
287f7d195e4SLawrence Mitchell               col += in[j] % bs;
288f7d195e4SLawrence Mitchell             }
2898295de27SSatish Balay           } else col = in[j];
290db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
291db4deed7SKarl Rupp           else value = v[i + j * m];
292d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
2939566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
29457b952d6SSatish Balay         }
29557b952d6SSatish Balay       }
296d64ed03dSBarry Smith     } else {
2975f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
29890f02eecSBarry Smith       if (!baij->donotstash) {
2995080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
300ff2fd236SBarry Smith         if (roworiented) {
3019566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
302ff2fd236SBarry Smith         } else {
3039566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
30457b952d6SSatish Balay         }
30557b952d6SSatish Balay       }
30657b952d6SSatish Balay     }
30790f02eecSBarry Smith   }
3083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
30957b952d6SSatish Balay }
31057b952d6SSatish Balay 
311d71ae5a4SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol)
312d71ae5a4SJacob Faibussowitsch {
313880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
3148ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
315880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
3168ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
317880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
318880c6e6aSBarry Smith   const PetscScalar *value       = v;
319880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
320880c6e6aSBarry Smith 
321880c6e6aSBarry Smith   PetscFunctionBegin;
322880c6e6aSBarry Smith   rp    = aj + ai[row];
323880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
324880c6e6aSBarry Smith   rmax  = imax[row];
325880c6e6aSBarry Smith   nrow  = ailen[row];
3268ab52850SBarry Smith   value = v;
3278ab52850SBarry Smith   low   = 0;
3288ab52850SBarry Smith   high  = nrow;
329880c6e6aSBarry Smith   while (high - low > 7) {
330880c6e6aSBarry Smith     t = (low + high) / 2;
331880c6e6aSBarry Smith     if (rp[t] > col) high = t;
332880c6e6aSBarry Smith     else low = t;
333880c6e6aSBarry Smith   }
334880c6e6aSBarry Smith   for (i = low; i < high; i++) {
335880c6e6aSBarry Smith     if (rp[i] > col) break;
336880c6e6aSBarry Smith     if (rp[i] == col) {
337880c6e6aSBarry Smith       bap = ap + bs2 * i;
338880c6e6aSBarry Smith       if (roworiented) {
339880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3408ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
341ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] += *value++;
342880c6e6aSBarry Smith           }
343880c6e6aSBarry Smith         } else {
3448ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
345ad540459SPierre Jolivet             for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
346880c6e6aSBarry Smith           }
347880c6e6aSBarry Smith         }
348880c6e6aSBarry Smith       } else {
349880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3508ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
351ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] += value[jj];
352880c6e6aSBarry Smith             bap += bs;
353880c6e6aSBarry Smith           }
354880c6e6aSBarry Smith         } else {
3558ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
356ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) bap[jj] = value[jj];
357880c6e6aSBarry Smith             bap += bs;
358880c6e6aSBarry Smith           }
359880c6e6aSBarry Smith         }
360880c6e6aSBarry Smith       }
361880c6e6aSBarry Smith       goto noinsert2;
362880c6e6aSBarry Smith     }
363880c6e6aSBarry Smith   }
364880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3655f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
366880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3679371c9d4SSatish Balay   N = nrow++ - 1;
3689371c9d4SSatish Balay   high++;
369880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3709566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3719566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
372880c6e6aSBarry Smith   rp[i] = col;
373880c6e6aSBarry Smith   bap   = ap + bs2 * i;
374880c6e6aSBarry Smith   if (roworiented) {
3758ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
376ad540459SPierre Jolivet       for (jj = ii; jj < bs2; jj += bs) bap[jj] = *value++;
377880c6e6aSBarry Smith     }
378880c6e6aSBarry Smith   } else {
3798ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
380ad540459SPierre Jolivet       for (jj = 0; jj < bs; jj++) *bap++ = *value++;
381880c6e6aSBarry Smith     }
382880c6e6aSBarry Smith   }
383880c6e6aSBarry Smith noinsert2:;
384880c6e6aSBarry Smith   ailen[row] = nrow;
3853ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
386880c6e6aSBarry Smith }
387880c6e6aSBarry Smith 
3888ab52850SBarry Smith /*
3898ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3908ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3918ab52850SBarry Smith */
392d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
393d71ae5a4SJacob Faibussowitsch {
394ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
395dd6ea824SBarry Smith   const PetscScalar *value;
396f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
397ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
398899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
399899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
400d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
401ab26458aSBarry Smith 
402b16ae2b1SBarry Smith   PetscFunctionBegin;
40330793edcSSatish Balay   if (!barray) {
4049566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
40582502324SSatish Balay     baij->barray = barray;
40630793edcSSatish Balay   }
40730793edcSSatish Balay 
40826fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
40926fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
41026fbe8dcSKarl Rupp 
411ab26458aSBarry Smith   for (i = 0; i < m; i++) {
4125ef9f2a5SBarry Smith     if (im[i] < 0) continue;
4136bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
414ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
415ab26458aSBarry Smith       row = im[i] - rstart;
416ab26458aSBarry Smith       for (j = 0; j < n; j++) {
41715b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
41815b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
419f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
42015b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
421f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
42215b57d14SSatish Balay         } else { /* Here a copy is required */
423ab26458aSBarry Smith           if (roworiented) {
42453ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
425ab26458aSBarry Smith           } else {
42653ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
427abef11f7SSatish Balay           }
42853ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
42926fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
43053ef36baSBarry Smith             barray += bs;
43147513183SBarry Smith           }
43230793edcSSatish Balay           barray -= bs2;
43315b57d14SSatish Balay         }
434abef11f7SSatish Balay 
435abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
436abef11f7SSatish Balay           col = in[j] - cstart;
4379566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
438f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
439f7d195e4SLawrence Mitchell           continue;
440f7d195e4SLawrence Mitchell         } else {
441f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
442ab26458aSBarry Smith           if (mat->was_assembled) {
44348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
444a5eb4965SSatish Balay 
4452515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
446aa482453SBarry Smith   #if defined(PETSC_USE_CTABLE)
4479371c9d4SSatish Balay             {
4489371c9d4SSatish Balay               PetscInt data;
449eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
45008401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
451fa46199cSSatish Balay             }
45248e59246SSatish Balay   #else
45308401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
454a5eb4965SSatish Balay   #endif
45548e59246SSatish Balay #endif
456aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
457eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
458fa46199cSSatish Balay             col = (col - 1) / bs;
45948e59246SSatish Balay #else
460a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1) / bs;
46148e59246SSatish Balay #endif
4620e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
4639566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
464ab26458aSBarry Smith               col = in[j];
4655f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
466db4deed7SKarl Rupp           } else col = in[j];
4679566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
468ab26458aSBarry Smith         }
469ab26458aSBarry Smith       }
470d64ed03dSBarry Smith     } else {
4715f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
472ab26458aSBarry Smith       if (!baij->donotstash) {
473ff2fd236SBarry Smith         if (roworiented) {
4749566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
475ff2fd236SBarry Smith         } else {
4769566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
477ff2fd236SBarry Smith         }
478abef11f7SSatish Balay       }
479ab26458aSBarry Smith     }
480ab26458aSBarry Smith   }
4813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
482ab26458aSBarry Smith }
4836fa18ffdSBarry Smith 
4840bdbc534SSatish Balay #define HASH_KEY             0.6180339887
485b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
486b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
487b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
488d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
489d71ae5a4SJacob Faibussowitsch {
4900bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
491ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
492b24ad042SBarry Smith   PetscInt     i, j, row, col;
493d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
494d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
495d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
496329f5518SBarry Smith   PetscReal    tmp;
4973eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
498b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
4990bdbc534SSatish Balay 
5000bdbc534SSatish Balay   PetscFunctionBegin;
5010bdbc534SSatish Balay   for (i = 0; i < m; i++) {
50276bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5035f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
5045f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
50576bd3646SJed Brown     }
5060bdbc534SSatish Balay     row = im[i];
507c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
5080bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5090bdbc534SSatish Balay         col = in[j];
510db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
511db4deed7SKarl Rupp         else value = v[i + j * m];
512b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
513c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
514c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5150bdbc534SSatish Balay 
516c2760754SSatish Balay         idx = h1;
51776bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
518187ce0cbSSatish Balay           insert_ct++;
519187ce0cbSSatish Balay           total_ct++;
520187ce0cbSSatish Balay           if (HT[idx] != key) {
5219371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5229371c9d4SSatish Balay               ;
523187ce0cbSSatish Balay             if (idx == size) {
5249371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5259371c9d4SSatish Balay                 ;
5265f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
527187ce0cbSSatish Balay             }
528187ce0cbSSatish Balay           }
52976bd3646SJed Brown         } else if (HT[idx] != key) {
5309371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
5319371c9d4SSatish Balay             ;
532c2760754SSatish Balay           if (idx == size) {
5339371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
5349371c9d4SSatish Balay               ;
5355f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
536c2760754SSatish Balay           }
537c2760754SSatish Balay         }
538c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
539c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
540c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
5410bdbc534SSatish Balay       }
54226fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
543ff2fd236SBarry Smith       if (roworiented) {
5449566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
545ff2fd236SBarry Smith       } else {
5469566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
5470bdbc534SSatish Balay       }
5480bdbc534SSatish Balay     }
5490bdbc534SSatish Balay   }
55076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
551abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
552abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
55376bd3646SJed Brown   }
5543ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
5550bdbc534SSatish Balay }
5560bdbc534SSatish Balay 
557d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv)
558d71ae5a4SJacob Faibussowitsch {
5590bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
560ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
561b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
562899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
563d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
564b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
565329f5518SBarry Smith   PetscReal          tmp;
5663eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
567dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
568b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5690bdbc534SSatish Balay 
570d0a41580SSatish Balay   PetscFunctionBegin;
57126fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
57226fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
57326fbe8dcSKarl Rupp 
5740bdbc534SSatish Balay   for (i = 0; i < m; i++) {
57576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5765f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5775f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
57876bd3646SJed Brown     }
5790bdbc534SSatish Balay     row = im[i];
580ab715e2cSSatish Balay     v_t = v + i * nbs2;
581c2760754SSatish Balay     if (row >= rstart && row < rend) {
5820bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5830bdbc534SSatish Balay         col = in[j];
5840bdbc534SSatish Balay 
5850bdbc534SSatish Balay         /* Look up into the Hash Table */
586c2760754SSatish Balay         key = row * Nbs + col + 1;
587c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5880bdbc534SSatish Balay 
589c2760754SSatish Balay         idx = h1;
59076bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
591187ce0cbSSatish Balay           total_ct++;
592187ce0cbSSatish Balay           insert_ct++;
593187ce0cbSSatish Balay           if (HT[idx] != key) {
5949371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5959371c9d4SSatish Balay               ;
596187ce0cbSSatish Balay             if (idx == size) {
5979371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5989371c9d4SSatish Balay                 ;
5995f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
600187ce0cbSSatish Balay             }
601187ce0cbSSatish Balay           }
60276bd3646SJed Brown         } else if (HT[idx] != key) {
6039371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
6049371c9d4SSatish Balay             ;
605c2760754SSatish Balay           if (idx == size) {
6069371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
6079371c9d4SSatish Balay               ;
6085f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
609c2760754SSatish Balay           }
610c2760754SSatish Balay         }
611c2760754SSatish Balay         baij_a = HD[idx];
6120bdbc534SSatish Balay         if (roworiented) {
613c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
614187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
615187ce0cbSSatish Balay           value = v_t;
616187ce0cbSSatish Balay           v_t += bs;
617fef45726SSatish Balay           if (addv == ADD_VALUES) {
618c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
619ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] += *value++;
620b4cc0f5aSSatish Balay             }
621fef45726SSatish Balay           } else {
622c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
623ad540459SPierre Jolivet               for (jj = ii; jj < bs2; jj += bs) baij_a[jj] = *value++;
624fef45726SSatish Balay             }
625fef45726SSatish Balay           }
6260bdbc534SSatish Balay         } else {
6270bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
628fef45726SSatish Balay           if (addv == ADD_VALUES) {
629b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
630ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] += *value++;
631fef45726SSatish Balay             }
632fef45726SSatish Balay           } else {
633fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
634ad540459SPierre Jolivet               for (jj = 0; jj < bs; jj++) baij_a[jj] = *value++;
635b4cc0f5aSSatish Balay             }
6360bdbc534SSatish Balay           }
6370bdbc534SSatish Balay         }
6380bdbc534SSatish Balay       }
6390bdbc534SSatish Balay     } else {
6400bdbc534SSatish Balay       if (!baij->donotstash) {
6410bdbc534SSatish Balay         if (roworiented) {
6429566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6430bdbc534SSatish Balay         } else {
6449566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
6450bdbc534SSatish Balay         }
6460bdbc534SSatish Balay       }
6470bdbc534SSatish Balay     }
6480bdbc534SSatish Balay   }
64976bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
650abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
651abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
65276bd3646SJed Brown   }
6533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
6540bdbc534SSatish Balay }
655133cdb44SSatish Balay 
656d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[])
657d71ae5a4SJacob Faibussowitsch {
658d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
659d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
660d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
661d6de1c52SSatish Balay 
662133cdb44SSatish Balay   PetscFunctionBegin;
663d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
66454c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
66554c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
666d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
667d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
668d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
66954c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
67054c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
671d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
672d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6739566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
674d64ed03dSBarry Smith         } else {
67548a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
676aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
677eec179cfSJacob Faibussowitsch           PetscCall(PetscHMapIGetWithDefault(baij->colmap, idxn[j] / bs + 1, 0, &data));
678fa46199cSSatish Balay           data--;
67948e59246SSatish Balay #else
68048e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
68148e59246SSatish Balay #endif
68248e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
683d9d09a02SSatish Balay           else {
68448e59246SSatish Balay             col = data + idxn[j] % bs;
6859566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
686d6de1c52SSatish Balay           }
687d6de1c52SSatish Balay         }
688d6de1c52SSatish Balay       }
689f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
690d6de1c52SSatish Balay   }
6913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
692d6de1c52SSatish Balay }
693d6de1c52SSatish Balay 
694d71ae5a4SJacob Faibussowitsch PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm)
695d71ae5a4SJacob Faibussowitsch {
696d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
697d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
698d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
699329f5518SBarry Smith   PetscReal    sum = 0.0;
7003eda8832SBarry Smith   MatScalar   *v;
701d6de1c52SSatish Balay 
702d64ed03dSBarry Smith   PetscFunctionBegin;
703d6de1c52SSatish Balay   if (baij->size == 1) {
7049566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
705d6de1c52SSatish Balay   } else {
706d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
707d6de1c52SSatish Balay       v  = amat->a;
7088a62d963SHong Zhang       nz = amat->nz * bs2;
7098a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7109371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7119371c9d4SSatish Balay         v++;
712d6de1c52SSatish Balay       }
713d6de1c52SSatish Balay       v  = bmat->a;
7148a62d963SHong Zhang       nz = bmat->nz * bs2;
7158a62d963SHong Zhang       for (i = 0; i < nz; i++) {
7169371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
7179371c9d4SSatish Balay         v++;
718d6de1c52SSatish Balay       }
7191c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7208f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7218a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7228a62d963SHong Zhang       PetscReal *tmp, *tmp2;
723899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
7249566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
7259566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
7269371c9d4SSatish Balay       v  = amat->a;
7279371c9d4SSatish Balay       jj = amat->j;
7288a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
7298a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7308a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
7318a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7329371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7339371c9d4SSatish Balay             v++;
7348a62d963SHong Zhang           }
7358a62d963SHong Zhang         }
7368a62d963SHong Zhang         jj++;
7378a62d963SHong Zhang       }
7389371c9d4SSatish Balay       v  = bmat->a;
7399371c9d4SSatish Balay       jj = bmat->j;
7408a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
7418a62d963SHong Zhang         for (j = 0; j < bs; j++) {
7428a62d963SHong Zhang           col = bs * garray[*jj] + j;
7438a62d963SHong Zhang           for (row = 0; row < bs; row++) {
7449371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
7459371c9d4SSatish Balay             v++;
7468a62d963SHong Zhang           }
7478a62d963SHong Zhang         }
7488a62d963SHong Zhang         jj++;
7498a62d963SHong Zhang       }
7501c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
7518a62d963SHong Zhang       *nrm = 0.0;
752d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
7538a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7548a62d963SHong Zhang       }
7559566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7569566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7578a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
758577dd1f9SKris Buschelman       PetscReal *sums;
7599566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7608a62d963SHong Zhang       sum = 0.0;
7618a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7628a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7638a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7648a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7658a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7668a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7678a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7689371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7699371c9d4SSatish Balay               v++;
7708a62d963SHong Zhang             }
7718a62d963SHong Zhang           }
7728a62d963SHong Zhang         }
7738a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7748a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7758a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7768a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7778a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7789371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7799371c9d4SSatish Balay               v++;
7808a62d963SHong Zhang             }
7818a62d963SHong Zhang           }
7828a62d963SHong Zhang         }
7838a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7848a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7858a62d963SHong Zhang         }
7868a62d963SHong Zhang       }
7871c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7889566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
789ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
790d64ed03dSBarry Smith   }
7913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
792d6de1c52SSatish Balay }
79357b952d6SSatish Balay 
794fef45726SSatish Balay /*
795fef45726SSatish Balay   Creates the hash table, and sets the table
796fef45726SSatish Balay   This table is created only once.
797fef45726SSatish Balay   If new entried need to be added to the matrix
798fef45726SSatish Balay   then the hash table has to be destroyed and
799fef45726SSatish Balay   recreated.
800fef45726SSatish Balay */
801d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor)
802d71ae5a4SJacob Faibussowitsch {
803596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
804596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
805596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
806b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
807fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
808899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
809b24ad042SBarry Smith   PetscInt    *HT, key;
8103eda8832SBarry Smith   MatScalar  **HD;
811329f5518SBarry Smith   PetscReal    tmp;
8126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
813b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
8144a15367fSSatish Balay #endif
815fef45726SSatish Balay 
816d64ed03dSBarry Smith   PetscFunctionBegin;
8173ba16761SJacob Faibussowitsch   if (baij->ht) PetscFunctionReturn(PETSC_SUCCESS);
818fef45726SSatish Balay 
819fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
820fca92195SBarry Smith   ht_size       = baij->ht_size;
8210bdbc534SSatish Balay 
822fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8239566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
824b9e4cc15SSatish Balay   HD = baij->hd;
825a07cd24cSSatish Balay   HT = baij->ht;
826b9e4cc15SSatish Balay 
827596b8d2eSBarry Smith   /* Loop Over A */
8280bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
829596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
8300bdbc534SSatish Balay       row = i + rstart;
8310bdbc534SSatish Balay       col = aj[j] + cstart;
832596b8d2eSBarry Smith 
833187ce0cbSSatish Balay       key = row * Nbs + col + 1;
834fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
835fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
836fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
837fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
838fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
839596b8d2eSBarry Smith           break;
8406cf91177SBarry Smith #if defined(PETSC_USE_INFO)
841187ce0cbSSatish Balay         } else {
842187ce0cbSSatish Balay           ct++;
843187ce0cbSSatish Balay #endif
844596b8d2eSBarry Smith         }
845187ce0cbSSatish Balay       }
8466cf91177SBarry Smith #if defined(PETSC_USE_INFO)
847187ce0cbSSatish Balay       if (k > max) max = k;
848187ce0cbSSatish Balay #endif
849596b8d2eSBarry Smith     }
850596b8d2eSBarry Smith   }
851596b8d2eSBarry Smith   /* Loop Over B */
8520bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
853596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
8540bdbc534SSatish Balay       row = i + rstart;
8550bdbc534SSatish Balay       col = garray[bj[j]];
856187ce0cbSSatish Balay       key = row * Nbs + col + 1;
857fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
858fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
859fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
860fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
861fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
862596b8d2eSBarry Smith           break;
8636cf91177SBarry Smith #if defined(PETSC_USE_INFO)
864187ce0cbSSatish Balay         } else {
865187ce0cbSSatish Balay           ct++;
866187ce0cbSSatish Balay #endif
867596b8d2eSBarry Smith         }
868187ce0cbSSatish Balay       }
8696cf91177SBarry Smith #if defined(PETSC_USE_INFO)
870187ce0cbSSatish Balay       if (k > max) max = k;
871187ce0cbSSatish Balay #endif
872596b8d2eSBarry Smith     }
873596b8d2eSBarry Smith   }
874596b8d2eSBarry Smith 
875596b8d2eSBarry Smith   /* Print Summary */
8766cf91177SBarry Smith #if defined(PETSC_USE_INFO)
877fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
87826fbe8dcSKarl Rupp     if (HT[i]) j++;
879c38d4ed2SBarry Smith   }
8809566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
881187ce0cbSSatish Balay #endif
8823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
883596b8d2eSBarry Smith }
88457b952d6SSatish Balay 
885d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode)
886d71ae5a4SJacob Faibussowitsch {
887bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
888b24ad042SBarry Smith   PetscInt     nstash, reallocs;
889bbb85fb3SSatish Balay 
890bbb85fb3SSatish Balay   PetscFunctionBegin;
8913ba16761SJacob Faibussowitsch   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(PETSC_SUCCESS);
892bbb85fb3SSatish Balay 
8939566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8949566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8959566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8969566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8979566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8989566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
900bbb85fb3SSatish Balay }
901bbb85fb3SSatish Balay 
902d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode)
903d71ae5a4SJacob Faibussowitsch {
904bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
90591c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
906b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
907e44c0bd4SBarry Smith   PetscInt    *row, *col;
908ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
9093eda8832SBarry Smith   MatScalar   *val;
910b24ad042SBarry Smith   PetscMPIInt  n;
911bbb85fb3SSatish Balay 
912bbb85fb3SSatish Balay   PetscFunctionBegin;
9135fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9144cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
915a2d1c673SSatish Balay     while (1) {
9169566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
917a2d1c673SSatish Balay       if (!flg) break;
918a2d1c673SSatish Balay 
919bbb85fb3SSatish Balay       for (i = 0; i < n;) {
920bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92126fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
92226fbe8dcSKarl Rupp           if (row[j] != rstart) break;
92326fbe8dcSKarl Rupp         }
924bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
925bbb85fb3SSatish Balay         else ncols = n - i;
926bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9279566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
928bbb85fb3SSatish Balay         i = j;
929bbb85fb3SSatish Balay       }
930bbb85fb3SSatish Balay     }
9319566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
932a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
933a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
934a2d1c673SSatish Balay        restore the original flags */
935a2d1c673SSatish Balay     r1 = baij->roworiented;
936a2d1c673SSatish Balay     r2 = a->roworiented;
93791c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
93826fbe8dcSKarl Rupp 
9397c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
9407c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
94126fbe8dcSKarl Rupp 
94291c97fd4SSatish Balay     (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
943a2d1c673SSatish Balay     while (1) {
9449566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
945a2d1c673SSatish Balay       if (!flg) break;
946a2d1c673SSatish Balay 
947a2d1c673SSatish Balay       for (i = 0; i < n;) {
948a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
94926fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
95026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
95126fbe8dcSKarl Rupp         }
952a2d1c673SSatish Balay         if (j < n) ncols = j - i;
953a2d1c673SSatish Balay         else ncols = n - i;
9549566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
955a2d1c673SSatish Balay         i = j;
956a2d1c673SSatish Balay       }
957a2d1c673SSatish Balay     }
9589566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
95926fbe8dcSKarl Rupp 
960a2d1c673SSatish Balay     baij->roworiented = r1;
961a2d1c673SSatish Balay     a->roworiented    = r2;
96226fbe8dcSKarl Rupp 
96391c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
964bbb85fb3SSatish Balay   }
965bbb85fb3SSatish Balay 
9669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
968bbb85fb3SSatish Balay 
969bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9706aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
971bbb85fb3SSatish Balay   /*
972bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
973bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
974bbb85fb3SSatish Balay   */
975bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9765f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
97748a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
978bbb85fb3SSatish Balay   }
979bbb85fb3SSatish Balay 
98048a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
983bbb85fb3SSatish Balay 
9846cf91177SBarry Smith #if defined(PETSC_USE_INFO)
985bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9869566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
98726fbe8dcSKarl Rupp 
988bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
989bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
990bbb85fb3SSatish Balay   }
991bbb85fb3SSatish Balay #endif
992bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9939566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
99426fbe8dcSKarl Rupp 
995bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
996bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
997bbb85fb3SSatish Balay   }
998bbb85fb3SSatish Balay 
9999566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
100026fbe8dcSKarl Rupp 
1001f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
10024f9cfa9eSBarry Smith 
10034f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
10044f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
1005e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
10061c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
1007e56f5c9eSBarry Smith   }
10083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1009bbb85fb3SSatish Balay }
101057b952d6SSatish Balay 
10117da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
10129804daf3SBarry Smith #include <petscdraw.h>
1013d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer)
1014d71ae5a4SJacob Faibussowitsch {
101557b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
10167da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1017d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1018ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
1019b0a32e0cSBarry Smith   PetscViewer       sviewer;
1020f3ef73ceSBarry Smith   PetscViewerFormat format;
102157b952d6SSatish Balay 
1022d64ed03dSBarry Smith   PetscFunctionBegin;
10239566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
10249566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
102532077d6dSBarry Smith   if (iascii) {
10269566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
1027456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10284e220ebcSLois Curfman McInnes       MatInfo info;
10299566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
10309566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
10319566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
10329371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
10339371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
10349566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
10359566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10369566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
10379566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
10389566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
10399566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
10409566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
10419566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
10423ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
1043fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
10449566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
10453ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104604929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
10473ba16761SJacob Faibussowitsch       PetscFunctionReturn(PETSC_SUCCESS);
104857b952d6SSatish Balay     }
104957b952d6SSatish Balay   }
105057b952d6SSatish Balay 
10510f5bd95cSBarry Smith   if (isdraw) {
1052b0a32e0cSBarry Smith     PetscDraw draw;
1053ace3abfcSBarry Smith     PetscBool isnull;
10549566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
10559566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
10563ba16761SJacob Faibussowitsch     if (isnull) PetscFunctionReturn(PETSC_SUCCESS);
105757b952d6SSatish Balay   }
105857b952d6SSatish Balay 
10597da1fb6eSBarry Smith   {
106057b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
106157b952d6SSatish Balay     Mat          A;
106257b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1063d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10643eda8832SBarry Smith     MatScalar   *a;
10653e219373SBarry Smith     const char  *matname;
106657b952d6SSatish Balay 
1067f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1068f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10699566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1070dd400576SPatrick Sanan     if (rank == 0) {
10719566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1072d64ed03dSBarry Smith     } else {
10739566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
107457b952d6SSatish Balay     }
10759566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10769566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10779566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
107857b952d6SSatish Balay 
107957b952d6SSatish Balay     /* copy over the A part */
108057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10819371c9d4SSatish Balay     ai   = Aloc->i;
10829371c9d4SSatish Balay     aj   = Aloc->j;
10839371c9d4SSatish Balay     a    = Aloc->a;
10849566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
108557b952d6SSatish Balay 
108657b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1087899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
108826fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
108957b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1090899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
109157b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10929566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10939371c9d4SSatish Balay           col++;
10949371c9d4SSatish Balay           a += bs;
109557b952d6SSatish Balay         }
109657b952d6SSatish Balay       }
109757b952d6SSatish Balay     }
109857b952d6SSatish Balay     /* copy over the B part */
109957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
11009371c9d4SSatish Balay     ai   = Aloc->i;
11019371c9d4SSatish Balay     aj   = Aloc->j;
11029371c9d4SSatish Balay     a    = Aloc->a;
110357b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1104899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
110526fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
110657b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
110757b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
110857b952d6SSatish Balay         for (k = 0; k < bs; k++) {
11099566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
11109371c9d4SSatish Balay           col++;
11119371c9d4SSatish Balay           a += bs;
111257b952d6SSatish Balay         }
111357b952d6SSatish Balay       }
111457b952d6SSatish Balay     }
11159566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
11169566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
11179566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
111855843e3eSBarry Smith     /*
111955843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1120b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
112155843e3eSBarry Smith     */
11229566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
112323a3927dSBarry Smith     if (((PetscObject)mat)->name) PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1124dd400576SPatrick Sanan     if (rank == 0) {
112523a3927dSBarry Smith       if (((PetscObject)mat)->name) PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname));
11269566063dSJacob Faibussowitsch       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer));
112757b952d6SSatish Balay     }
11289566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
11299566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
11309566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
113157b952d6SSatish Balay   }
11323ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
113357b952d6SSatish Balay }
113457b952d6SSatish Balay 
1135618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1136d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
1137d71ae5a4SJacob Faibussowitsch {
1138b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1139b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1140b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1141b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
114217a3732bSBarry Smith   PetscInt        header[4], M, N, m, rs, cs, bs, cnt, i, j, ja, jb, k, l;
114317a3732bSBarry Smith   PetscInt64      nz, hnz;
1144b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1145b51a4376SLisandro Dalcin   PetscScalar    *matvals;
114617a3732bSBarry Smith   PetscMPIInt     rank;
1147660746e0SBarry Smith 
1148660746e0SBarry Smith   PetscFunctionBegin;
11499566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1150b51a4376SLisandro Dalcin 
1151b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1152b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1153b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1154b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1155b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1156b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1157b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1158b51a4376SLisandro Dalcin 
1159b51a4376SLisandro Dalcin   /* write matrix header */
1160660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
11619371c9d4SSatish Balay   header[1] = M;
11629371c9d4SSatish Balay   header[2] = N;
116317a3732bSBarry Smith   PetscCallMPI(MPI_Reduce(&nz, &hnz, 1, MPIU_INT64, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
116417a3732bSBarry Smith   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
116517a3732bSBarry Smith   if (rank == 0) PetscCall(PetscIntCast(hnz, &header[3]));
11669566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1167660746e0SBarry Smith 
1168b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1170b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11719371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11729566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11739566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1174660746e0SBarry Smith 
1175b51a4376SLisandro Dalcin   /* fill in and store column indices */
11769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1177b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1178b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1179b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1180b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11819371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1182660746e0SBarry Smith       }
1183b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11849371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1185b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11869371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1187660746e0SBarry Smith     }
1188660746e0SBarry Smith   }
118917a3732bSBarry Smith   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt64_FMT, cnt, nz);
11909566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11919566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1192660746e0SBarry Smith 
1193b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1195b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1196b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1197b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1198b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11999371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1200660746e0SBarry Smith       }
1201b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
12029371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1203b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
12049371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1205660746e0SBarry Smith     }
1206b51a4376SLisandro Dalcin   }
12079566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
12089566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1209660746e0SBarry Smith 
1210b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
12119566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
12123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1213660746e0SBarry Smith }
1214660746e0SBarry Smith 
1215d71ae5a4SJacob Faibussowitsch PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer)
1216d71ae5a4SJacob Faibussowitsch {
1217ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
121857b952d6SSatish Balay 
1219d64ed03dSBarry Smith   PetscFunctionBegin;
12209566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
12219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
12229566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
12239566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1224660746e0SBarry Smith   if (iascii || isdraw || issocket) {
12259566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
12261baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
12273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
122857b952d6SSatish Balay }
122957b952d6SSatish Balay 
1230d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy)
1231d71ae5a4SJacob Faibussowitsch {
1232cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1233b24ad042SBarry Smith   PetscInt     nt;
1234cee3aa6bSSatish Balay 
1235d64ed03dSBarry Smith   PetscFunctionBegin;
12369566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12375f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12389566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
1239da81f932SPierre Jolivet   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and yy");
12409566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12419566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12429566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12439566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12443ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1245cee3aa6bSSatish Balay }
1246cee3aa6bSSatish Balay 
1247d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1248d71ae5a4SJacob Faibussowitsch {
1249cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1250d64ed03dSBarry Smith 
1251d64ed03dSBarry Smith   PetscFunctionBegin;
12529566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12539566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12549566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12559566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1257cee3aa6bSSatish Balay }
1258cee3aa6bSSatish Balay 
1259d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy)
1260d71ae5a4SJacob Faibussowitsch {
1261cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1262cee3aa6bSSatish Balay 
1263d64ed03dSBarry Smith   PetscFunctionBegin;
1264cee3aa6bSSatish Balay   /* do nondiagonal part */
12659566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1266cee3aa6bSSatish Balay   /* do local part */
12679566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1268e4a140f6SJunchao Zhang   /* add partial results together */
12699566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12709566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12713ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1272cee3aa6bSSatish Balay }
1273cee3aa6bSSatish Balay 
1274d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz)
1275d71ae5a4SJacob Faibussowitsch {
1276cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1277cee3aa6bSSatish Balay 
1278d64ed03dSBarry Smith   PetscFunctionBegin;
1279cee3aa6bSSatish Balay   /* do nondiagonal part */
12809566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1281cee3aa6bSSatish Balay   /* do local part */
12829566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1283e4a140f6SJunchao Zhang   /* add partial results together */
12849566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12859566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1287cee3aa6bSSatish Balay }
1288cee3aa6bSSatish Balay 
1289cee3aa6bSSatish Balay /*
1290cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1291cee3aa6bSSatish Balay    diagonal block
1292cee3aa6bSSatish Balay */
1293d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v)
1294d71ae5a4SJacob Faibussowitsch {
1295d64ed03dSBarry Smith   PetscFunctionBegin;
12965f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12979566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12983ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1299cee3aa6bSSatish Balay }
1300cee3aa6bSSatish Balay 
1301d71ae5a4SJacob Faibussowitsch PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa)
1302d71ae5a4SJacob Faibussowitsch {
1303cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1304d64ed03dSBarry Smith 
1305d64ed03dSBarry Smith   PetscFunctionBegin;
13069566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
13079566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
13083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1309cee3aa6bSSatish Balay }
1310026e39d0SSatish Balay 
1311d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1312d71ae5a4SJacob Faibussowitsch {
1313acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
131487828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1315d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1316d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1317899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1318acdf5bf4SSatish Balay 
1319d64ed03dSBarry Smith   PetscFunctionBegin;
13205f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
13215f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1322acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1323acdf5bf4SSatish Balay 
1324acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1325acdf5bf4SSatish Balay     /*
1326acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1327acdf5bf4SSatish Balay     */
1328acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1329b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1330bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1331acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
133226fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1333acdf5bf4SSatish Balay     }
13349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1335acdf5bf4SSatish Balay   }
1336d9d09a02SSatish Balay   lrow = row - brstart;
1337acdf5bf4SSatish Balay 
13389371c9d4SSatish Balay   pvA = &vworkA;
13399371c9d4SSatish Balay   pcA = &cworkA;
13409371c9d4SSatish Balay   pvB = &vworkB;
13419371c9d4SSatish Balay   pcB = &cworkB;
13429371c9d4SSatish Balay   if (!v) {
13439371c9d4SSatish Balay     pvA = NULL;
13449371c9d4SSatish Balay     pvB = NULL;
13459371c9d4SSatish Balay   }
13469371c9d4SSatish Balay   if (!idx) {
13479371c9d4SSatish Balay     pcA = NULL;
13489371c9d4SSatish Balay     if (!v) pcB = NULL;
13499371c9d4SSatish Balay   }
13509566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13519566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1352acdf5bf4SSatish Balay   nztot = nzA + nzB;
1353acdf5bf4SSatish Balay 
1354acdf5bf4SSatish Balay   cmap = mat->garray;
1355acdf5bf4SSatish Balay   if (v || idx) {
1356acdf5bf4SSatish Balay     if (nztot) {
1357acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1358b24ad042SBarry Smith       PetscInt imark = -1;
1359acdf5bf4SSatish Balay       if (v) {
1360acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1361acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1362d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1363acdf5bf4SSatish Balay           else break;
1364acdf5bf4SSatish Balay         }
1365acdf5bf4SSatish Balay         imark = i;
1366acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1367acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1368acdf5bf4SSatish Balay       }
1369acdf5bf4SSatish Balay       if (idx) {
1370acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1371acdf5bf4SSatish Balay         if (imark > -1) {
1372ad540459SPierre Jolivet           for (i = 0; i < imark; i++) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1373acdf5bf4SSatish Balay         } else {
1374acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
137526fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1376acdf5bf4SSatish Balay             else break;
1377acdf5bf4SSatish Balay           }
1378acdf5bf4SSatish Balay           imark = i;
1379acdf5bf4SSatish Balay         }
1380d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1381d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1382acdf5bf4SSatish Balay       }
1383d64ed03dSBarry Smith     } else {
1384f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1385f4259b30SLisandro Dalcin       if (v) *v = NULL;
1386d212a18eSSatish Balay     }
1387acdf5bf4SSatish Balay   }
1388acdf5bf4SSatish Balay   *nz = nztot;
13899566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13909566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1392acdf5bf4SSatish Balay }
1393acdf5bf4SSatish Balay 
1394d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v)
1395d71ae5a4SJacob Faibussowitsch {
1396acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1397d64ed03dSBarry Smith 
1398d64ed03dSBarry Smith   PetscFunctionBegin;
13995f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1400acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
14013ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1402acdf5bf4SSatish Balay }
1403acdf5bf4SSatish Balay 
1404d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
1405d71ae5a4SJacob Faibussowitsch {
140658667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1407d64ed03dSBarry Smith 
1408d64ed03dSBarry Smith   PetscFunctionBegin;
14099566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
14109566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
14113ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
141258667388SSatish Balay }
14130ac07820SSatish Balay 
1414d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info)
1415d71ae5a4SJacob Faibussowitsch {
14164e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
14174e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
14183966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
14190ac07820SSatish Balay 
1420d64ed03dSBarry Smith   PetscFunctionBegin;
1421d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
142226fbe8dcSKarl Rupp 
14239566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
142426fbe8dcSKarl Rupp 
14259371c9d4SSatish Balay   isend[0] = info->nz_used;
14269371c9d4SSatish Balay   isend[1] = info->nz_allocated;
14279371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
14289371c9d4SSatish Balay   isend[3] = info->memory;
14299371c9d4SSatish Balay   isend[4] = info->mallocs;
143026fbe8dcSKarl Rupp 
14319566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
143226fbe8dcSKarl Rupp 
14339371c9d4SSatish Balay   isend[0] += info->nz_used;
14349371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14359371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14369371c9d4SSatish Balay   isend[3] += info->memory;
14379371c9d4SSatish Balay   isend[4] += info->mallocs;
143826fbe8dcSKarl Rupp 
14390ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14404e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14414e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14424e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14434e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14444e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14450ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14461c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
144726fbe8dcSKarl Rupp 
14484e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14494e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14504e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14514e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14524e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14530ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14541c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
145526fbe8dcSKarl Rupp 
14564e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14574e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14584e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14594e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14604e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
146198921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14624e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14634e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14644e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14660ac07820SSatish Balay }
14670ac07820SSatish Balay 
1468d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg)
1469d71ae5a4SJacob Faibussowitsch {
147058667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
147158667388SSatish Balay 
1472d64ed03dSBarry Smith   PetscFunctionBegin;
147312c028f9SKris Buschelman   switch (op) {
1474512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
147512c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
147628b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1477a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
147812c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
147943674050SBarry Smith     MatCheckPreallocated(A, 1);
14809566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14819566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148212c028f9SKris Buschelman     break;
148312c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
148443674050SBarry Smith     MatCheckPreallocated(A, 1);
14854e0d8c25SBarry Smith     a->roworiented = flg;
148626fbe8dcSKarl Rupp 
14879566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
148912c028f9SKris Buschelman     break;
14908c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1491d71ae5a4SJacob Faibussowitsch   case MAT_SORTED_FULL:
1492d71ae5a4SJacob Faibussowitsch     PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op]));
1493d71ae5a4SJacob Faibussowitsch     break;
1494d71ae5a4SJacob Faibussowitsch   case MAT_IGNORE_OFF_PROC_ENTRIES:
1495d71ae5a4SJacob Faibussowitsch     a->donotstash = flg;
1496d71ae5a4SJacob Faibussowitsch     break;
149712c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14984e0d8c25SBarry Smith     a->ht_flag = flg;
1499abf3b562SBarry Smith     a->ht_fact = 1.39;
150012c028f9SKris Buschelman     break;
150177e54ba9SKris Buschelman   case MAT_SYMMETRIC:
150277e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
15032188ac68SBarry Smith   case MAT_HERMITIAN:
1504c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
15052188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1506b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1507b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1508b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
150977e54ba9SKris Buschelman     break;
1510d71ae5a4SJacob Faibussowitsch   default:
1511d71ae5a4SJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1512d64ed03dSBarry Smith   }
15133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
151458667388SSatish Balay }
151558667388SSatish Balay 
1516d71ae5a4SJacob Faibussowitsch PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout)
1517d71ae5a4SJacob Faibussowitsch {
15180ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
15190ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
15200ac07820SSatish Balay   Mat          B;
1521d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1522d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
15233eda8832SBarry Smith   MatScalar   *a;
15240ac07820SSatish Balay 
1525d64ed03dSBarry Smith   PetscFunctionBegin;
15267fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1527cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15289566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
15299566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
15309566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
15312e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15329566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1533fc4dec0aSBarry Smith   } else {
1534fc4dec0aSBarry Smith     B = *matout;
1535fc4dec0aSBarry Smith   }
15360ac07820SSatish Balay 
15370ac07820SSatish Balay   /* copy over the A part */
15380ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
15399371c9d4SSatish Balay   ai   = Aloc->i;
15409371c9d4SSatish Balay   aj   = Aloc->j;
15419371c9d4SSatish Balay   a    = Aloc->a;
15429566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15430ac07820SSatish Balay 
15440ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1545899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
154626fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15470ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1548899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15490ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15509566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
155126fbe8dcSKarl Rupp 
15529371c9d4SSatish Balay         col++;
15539371c9d4SSatish Balay         a += bs;
15540ac07820SSatish Balay       }
15550ac07820SSatish Balay     }
15560ac07820SSatish Balay   }
15570ac07820SSatish Balay   /* copy over the B part */
15580ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15599371c9d4SSatish Balay   ai   = Aloc->i;
15609371c9d4SSatish Balay   aj   = Aloc->j;
15619371c9d4SSatish Balay   a    = Aloc->a;
15620ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1563899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
156426fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15650ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15660ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15670ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15689566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
156926fbe8dcSKarl Rupp         col++;
157026fbe8dcSKarl Rupp         a += bs;
15710ac07820SSatish Balay       }
15720ac07820SSatish Balay     }
15730ac07820SSatish Balay   }
15749566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15759566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15770ac07820SSatish Balay 
1578cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
157948a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
15810ac07820SSatish Balay }
15820e95ebc0SSatish Balay 
1583d71ae5a4SJacob Faibussowitsch PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr)
1584d71ae5a4SJacob Faibussowitsch {
158536c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
158636c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1587b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15880e95ebc0SSatish Balay 
1589d64ed03dSBarry Smith   PetscFunctionBegin;
15909566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
159136c4a09eSSatish Balay   if (rr) {
15929566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15935f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
159436c4a09eSSatish Balay     /* Overlap communication with computation. */
15959566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
159636c4a09eSSatish Balay   }
15970e95ebc0SSatish Balay   if (ll) {
15989566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15995f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1600dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
16010e95ebc0SSatish Balay   }
160236c4a09eSSatish Balay   /* scale  the diagonal block */
1603dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
160436c4a09eSSatish Balay 
160536c4a09eSSatish Balay   if (rr) {
160636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
16079566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1608dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
160936c4a09eSSatish Balay   }
16103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16110e95ebc0SSatish Balay }
16120e95ebc0SSatish Balay 
1613d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1614d71ae5a4SJacob Faibussowitsch {
16150ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
161665a92638SMatthew G. Knepley   PetscInt    *lrows;
16176e520ac8SStefano Zampini   PetscInt     r, len;
161894342113SStefano Zampini   PetscBool    cong;
16190ac07820SSatish Balay 
1620d64ed03dSBarry Smith   PetscFunctionBegin;
16216e520ac8SStefano Zampini   /* get locally owned rows */
16229566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
162397b48c8fSBarry Smith   /* fix right hand side if needed */
162497b48c8fSBarry Smith   if (x && b) {
162565a92638SMatthew G. Knepley     const PetscScalar *xx;
162665a92638SMatthew G. Knepley     PetscScalar       *bb;
162765a92638SMatthew G. Knepley 
16289566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
16299566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
163065a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
16319566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
16329566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
163397b48c8fSBarry Smith   }
163497b48c8fSBarry Smith 
16350ac07820SSatish Balay   /* actually zap the local rows */
163672dacd9aSBarry Smith   /*
163772dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1638a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
163972dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
164072dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
164172dacd9aSBarry Smith 
164272dacd9aSBarry Smith   */
16439c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16449566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16459566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
164694342113SStefano Zampini   if ((diag != 0.0) && cong) {
16479566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1648f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16499566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
16505f80ce2aSJacob Faibussowitsch     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1651512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
165265a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
165365a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16549566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1655a07cd24cSSatish Balay     }
16569566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16579566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16589c957beeSSatish Balay   } else {
16599566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1660a07cd24cSSatish Balay   }
16619566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16624f9cfa9eSBarry Smith 
16634f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16644f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
1665e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16661c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1667e56f5c9eSBarry Smith   }
16683ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
16690ac07820SSatish Balay }
167072dacd9aSBarry Smith 
1671d71ae5a4SJacob Faibussowitsch PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b)
1672d71ae5a4SJacob Faibussowitsch {
16736f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1674131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1675131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16766f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16776f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16786f0a72daSMatthew G. Knepley   PetscSF            sf;
16796f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16806f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16816f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16826f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16836f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16846f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16856f0a72daSMatthew G. Knepley 
16866f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16876f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16889566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16896f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16909566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16916f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16926f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16935f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16945ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16959566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16965ba17502SJed Brown     }
16976f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16986f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16996f0a72daSMatthew G. Knepley   }
17009566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
17019566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
17026f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
17039566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17049566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
17059566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
17066f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
17079371c9d4SSatish Balay   for (r = 0; r < n; ++r)
17089371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
17096f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
17109566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
17116f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
17129566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
17139566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
17149566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
17156f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
17169566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
17179566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17189566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
17199566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
17206f0a72daSMatthew G. Knepley   if (x) {
17219566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17229566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
17239566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
17249566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
17256f0a72daSMatthew G. Knepley   }
17269566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
17276f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17286f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17296f0a72daSMatthew G. Knepley     row   = lrows[i];
17306f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
17316f0a72daSMatthew G. Knepley     aa    = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs);
17326f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17336f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17346f0a72daSMatthew G. Knepley       aa += bs;
17356f0a72daSMatthew G. Knepley     }
17366f0a72daSMatthew G. Knepley   }
17376f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17386f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17396f0a72daSMatthew G. Knepley     row = i / bs;
17406f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
17416f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17426f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
17436f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17446f0a72daSMatthew G. Knepley           aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k;
174589ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17466f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17476f0a72daSMatthew G. Knepley         }
17486f0a72daSMatthew G. Knepley       }
17496f0a72daSMatthew G. Knepley     }
17506f0a72daSMatthew G. Knepley   }
17516f0a72daSMatthew G. Knepley   if (x) {
17529566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17539566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17546f0a72daSMatthew G. Knepley   }
17559566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17569566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17579566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17584f9cfa9eSBarry Smith 
17594f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17604f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
17614f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17621c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17634f9cfa9eSBarry Smith   }
17643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17656f0a72daSMatthew G. Knepley }
17666f0a72daSMatthew G. Knepley 
1767d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1768d71ae5a4SJacob Faibussowitsch {
1769bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1770d64ed03dSBarry Smith 
1771d64ed03dSBarry Smith   PetscFunctionBegin;
17729566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17733ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1774bb5a7306SBarry Smith }
1775bb5a7306SBarry Smith 
17766849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17770ac07820SSatish Balay 
1778d71ae5a4SJacob Faibussowitsch PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag)
1779d71ae5a4SJacob Faibussowitsch {
17807fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17817fc3c18eSBarry Smith   Mat          a, b, c, d;
1782ace3abfcSBarry Smith   PetscBool    flg;
17837fc3c18eSBarry Smith 
17847fc3c18eSBarry Smith   PetscFunctionBegin;
17859371c9d4SSatish Balay   a = matA->A;
17869371c9d4SSatish Balay   b = matA->B;
17879371c9d4SSatish Balay   c = matB->A;
17889371c9d4SSatish Balay   d = matB->B;
17897fc3c18eSBarry Smith 
17909566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
179148a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17921c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17933ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
17947fc3c18eSBarry Smith }
17957fc3c18eSBarry Smith 
1796d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str)
1797d71ae5a4SJacob Faibussowitsch {
17983c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17993c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
18003c896bc6SHong Zhang 
18013c896bc6SHong Zhang   PetscFunctionBegin;
18023c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
18033c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
18049566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
18053c896bc6SHong Zhang   } else {
18069566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
18079566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
18083c896bc6SHong Zhang   }
18099566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
18103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18113c896bc6SHong Zhang }
1812273d9f13SBarry Smith 
1813d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz)
1814d71ae5a4SJacob Faibussowitsch {
1815001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
18164de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
18174de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
18184de5dceeSHong Zhang 
18194de5dceeSHong Zhang   PetscFunctionBegin;
18209566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
18213ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18224de5dceeSHong Zhang }
18234de5dceeSHong Zhang 
1824d71ae5a4SJacob Faibussowitsch PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str)
1825d71ae5a4SJacob Faibussowitsch {
18264fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
18274fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
18284fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1829b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
18304fe895cdSHong Zhang 
18314fe895cdSHong Zhang   PetscFunctionBegin;
18324fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18334fe895cdSHong Zhang     PetscScalar alpha = a;
18344fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
18354fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
18369566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1837792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18384fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
18394fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
18409566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1841792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
18429566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1843ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18449566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18454fe895cdSHong Zhang   } else {
18464de5dceeSHong Zhang     Mat       B;
18474de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18489566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18499566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18509566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18519566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18529566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18539566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18549566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18559566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18569566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18579566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18584de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18599566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18609566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18619566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18629566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18634fe895cdSHong Zhang   }
18643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18654fe895cdSHong Zhang }
18664fe895cdSHong Zhang 
1867d71ae5a4SJacob Faibussowitsch PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
1868d71ae5a4SJacob Faibussowitsch {
18695f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18705f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18712726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18722726fb6dSPierre Jolivet 
18739566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18749566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18755f80ce2aSJacob Faibussowitsch   }
18763ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18772726fb6dSPierre Jolivet }
18782726fb6dSPierre Jolivet 
1879d71ae5a4SJacob Faibussowitsch PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
1880d71ae5a4SJacob Faibussowitsch {
188199cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
188299cafbc1SBarry Smith 
188399cafbc1SBarry Smith   PetscFunctionBegin;
18849566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18859566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
18863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
188799cafbc1SBarry Smith }
188899cafbc1SBarry Smith 
1889d71ae5a4SJacob Faibussowitsch PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
1890d71ae5a4SJacob Faibussowitsch {
189199cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
189299cafbc1SBarry Smith 
189399cafbc1SBarry Smith   PetscFunctionBegin;
18949566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18959566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
18963ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189799cafbc1SBarry Smith }
189899cafbc1SBarry Smith 
1899d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat)
1900d71ae5a4SJacob Faibussowitsch {
19014aa3045dSJed Brown   IS       iscol_local;
19024aa3045dSJed Brown   PetscInt csize;
19034aa3045dSJed Brown 
19044aa3045dSJed Brown   PetscFunctionBegin;
19059566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1906b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
19079566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
19085f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1909b79d0421SJed Brown   } else {
19109566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1911b79d0421SJed Brown   }
19129566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat));
1913b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
19149566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
19159566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1916b79d0421SJed Brown   }
19173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
19184aa3045dSJed Brown }
191917df9f7cSHong Zhang 
192082094794SBarry Smith /*
192182094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
192282094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19237dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19248f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
192582094794SBarry Smith */
1926d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat)
1927d71ae5a4SJacob Faibussowitsch {
192882094794SBarry Smith   PetscMPIInt  rank, size;
192982094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1930c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
193129dcf524SDmitry Karpeev   Mat          M, Mreuse;
193282094794SBarry Smith   MatScalar   *vwork, *aa;
1933ce94432eSBarry Smith   MPI_Comm     comm;
193429dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
193582094794SBarry Smith   Mat_SeqBAIJ *aij;
193682094794SBarry Smith 
193782094794SBarry Smith   PetscFunctionBegin;
19389566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
19399566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
19409566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
194129dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
194229dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19439566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
1944864bd19bSPierre Jolivet   if (isrow == iscol) {
1945864bd19bSPierre Jolivet     iscol_new = isrow_new;
1946864bd19bSPierre Jolivet     PetscCall(PetscObjectReference((PetscObject)iscol_new));
1947864bd19bSPierre Jolivet   } else PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
194882094794SBarry Smith 
194982094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
19509566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19515f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
19529566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse));
195382094794SBarry Smith   } else {
19549566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse));
195582094794SBarry Smith   }
19569566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19579566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
195882094794SBarry Smith   /*
195982094794SBarry Smith       m - number of local rows
196082094794SBarry Smith       n - number of columns (same on all processors)
196182094794SBarry Smith       rstart - first row in new global matrix generated
196282094794SBarry Smith   */
19639566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19649566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
196582094794SBarry Smith   m = m / bs;
196682094794SBarry Smith   n = n / bs;
196782094794SBarry Smith 
196882094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
196982094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
197082094794SBarry Smith     ii  = aij->i;
197182094794SBarry Smith     jj  = aij->j;
197282094794SBarry Smith 
197382094794SBarry Smith     /*
197482094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
197582094794SBarry Smith         portions of the matrix in order to do correct preallocation
197682094794SBarry Smith     */
197782094794SBarry Smith 
197882094794SBarry Smith     /* first get start and end of "diagonal" columns */
197982094794SBarry Smith     if (csize == PETSC_DECIDE) {
19809566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
198182094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
198282094794SBarry Smith         nlocal = m;
198382094794SBarry Smith       } else {
198482094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
198582094794SBarry Smith       }
198682094794SBarry Smith     } else {
198782094794SBarry Smith       nlocal = csize / bs;
198882094794SBarry Smith     }
19899566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
199082094794SBarry Smith     rstart = rend - nlocal;
1991aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
199282094794SBarry Smith 
199382094794SBarry Smith     /* next, compute all the lengths */
19949566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
199582094794SBarry Smith     for (i = 0; i < m; i++) {
199682094794SBarry Smith       jend = ii[i + 1] - ii[i];
199782094794SBarry Smith       olen = 0;
199882094794SBarry Smith       dlen = 0;
199982094794SBarry Smith       for (j = 0; j < jend; j++) {
200082094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
200182094794SBarry Smith         else dlen++;
200282094794SBarry Smith         jj++;
200382094794SBarry Smith       }
200482094794SBarry Smith       olens[i] = olen;
200582094794SBarry Smith       dlens[i] = dlen;
200682094794SBarry Smith     }
20079566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
20089566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
20099566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
20109566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20119566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
20129566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
201382094794SBarry Smith   } else {
201482094794SBarry Smith     PetscInt ml, nl;
201582094794SBarry Smith 
201682094794SBarry Smith     M = *newmat;
20179566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
20185f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
20199566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
202082094794SBarry Smith     /*
202182094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
202282094794SBarry Smith        rather than the slower MatSetValues().
202382094794SBarry Smith     */
202482094794SBarry Smith     M->was_assembled = PETSC_TRUE;
202582094794SBarry Smith     M->assembled     = PETSC_FALSE;
202682094794SBarry Smith   }
20279566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
20289566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
202982094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
203082094794SBarry Smith   ii  = aij->i;
203182094794SBarry Smith   jj  = aij->j;
203282094794SBarry Smith   aa  = aij->a;
203382094794SBarry Smith   for (i = 0; i < m; i++) {
203482094794SBarry Smith     row   = rstart / bs + i;
203582094794SBarry Smith     nz    = ii[i + 1] - ii[i];
20369371c9d4SSatish Balay     cwork = jj;
20379371c9d4SSatish Balay     jj += nz;
20389371c9d4SSatish Balay     vwork = aa;
20399371c9d4SSatish Balay     aa += nz * bs * bs;
20409566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
204182094794SBarry Smith   }
204282094794SBarry Smith 
20439566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
20449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
204582094794SBarry Smith   *newmat = M;
204682094794SBarry Smith 
204782094794SBarry Smith   /* save submatrix used in processor for next request */
204882094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
20499566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
20509566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
205182094794SBarry Smith   }
20523ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
205382094794SBarry Smith }
205482094794SBarry Smith 
2055d71ae5a4SJacob Faibussowitsch PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B)
2056d71ae5a4SJacob Faibussowitsch {
205782094794SBarry Smith   MPI_Comm        comm, pcomm;
2058a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
205982094794SBarry Smith   const PetscInt *rows;
2060dbf0e21dSBarry Smith   PetscMPIInt     size;
2061a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
206282094794SBarry Smith 
206382094794SBarry Smith   PetscFunctionBegin;
20649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
206582094794SBarry Smith   /* make a collective version of 'rowp' */
20669566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
206782094794SBarry Smith   if (pcomm == comm) {
206882094794SBarry Smith     crowp = rowp;
206982094794SBarry Smith   } else {
20709566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20719566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20729566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20739566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
207482094794SBarry Smith   }
20759566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2076a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2079dbf0e21dSBarry Smith   if (size == 1) {
208082094794SBarry Smith     lcolp = colp;
208182094794SBarry Smith   } else {
20829566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
208382094794SBarry Smith   }
20849566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
208575f6568bSJed Brown   /* now we just get the submatrix */
20869566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
20879566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B));
2088a0a83eb5SRémi Lacroix   /* clean up */
208948a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
209048a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
20913ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
209282094794SBarry Smith }
209382094794SBarry Smith 
2094d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[])
2095d71ae5a4SJacob Faibussowitsch {
20968c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20978c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20988c7482ecSBarry Smith 
20998c7482ecSBarry Smith   PetscFunctionBegin;
210026fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
210126fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
21023ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21038c7482ecSBarry Smith }
21048c7482ecSBarry Smith 
2105d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat)
2106d71ae5a4SJacob Faibussowitsch {
2107f6d58c54SBarry Smith   Mat          B;
2108f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2109f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2110f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2111f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2112f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2113f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2114f6d58c54SBarry Smith 
2115f6d58c54SBarry Smith   PetscFunctionBegin;
21169566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
21179566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2118f6d58c54SBarry Smith 
21192ef1f0ffSBarry Smith   /*   Tell every processor the number of nonzeros per row  */
21209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
2121ad540459SPierre Jolivet   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs];
21229566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2123f6d58c54SBarry Smith   displs = recvcounts + size;
2124f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2125f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2126f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2127f6d58c54SBarry Smith   }
21289566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21292ef1f0ffSBarry Smith   /* Create the sequential matrix of the same type as the local block diagonal  */
21309566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
21319566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
21329566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
21339566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2134f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2135f6d58c54SBarry Smith 
21362ef1f0ffSBarry Smith   /*     Copy my part of matrix column indices over  */
2137f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2138f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2139f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2140f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2141f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2142f6d58c54SBarry Smith   cnt        = 0;
2143f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2144f6d58c54SBarry Smith     /* put in lower diagonal portion */
2145f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2146f6d58c54SBarry Smith     while (m > 0) {
2147f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2148f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2149f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2150f6d58c54SBarry Smith       m--;
2151f6d58c54SBarry Smith     }
2152f6d58c54SBarry Smith 
2153f6d58c54SBarry Smith     /* put in diagonal portion */
2154ad540459SPierre Jolivet     for (j = ad->i[i]; j < ad->i[i + 1]; j++) jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++;
2155f6d58c54SBarry Smith 
2156f6d58c54SBarry Smith     /* put in upper diagonal portion */
2157ad540459SPierre Jolivet     while (m-- > 0) jsendbuf[cnt++] = garray[*b_jsendbuf++];
2158f6d58c54SBarry Smith   }
21595f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2160f6d58c54SBarry Smith 
21612ef1f0ffSBarry Smith   /*  Gather all column indices to all processors  */
2162f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2163f6d58c54SBarry Smith     recvcounts[i] = 0;
2164ad540459SPierre Jolivet     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) recvcounts[i] += lens[j];
2165f6d58c54SBarry Smith   }
2166f6d58c54SBarry Smith   displs[0] = 0;
2167ad540459SPierre Jolivet   for (i = 1; i < size; i++) displs[i] = displs[i - 1] + recvcounts[i - 1];
21689566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
21692ef1f0ffSBarry Smith   /*  Assemble the matrix into useable form (note numerical values not yet set)  */
2170f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21719566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2172f6d58c54SBarry Smith   /* set the b->i indices */
2173f6d58c54SBarry Smith   b->i[0] = 0;
2174ad540459SPierre Jolivet   for (i = 1; i <= A->rmap->N / bs; i++) b->i[i] = b->i[i - 1] + lens[i - 1];
21759566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21769566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21779566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21789566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2179f6d58c54SBarry Smith 
2180b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2181f6d58c54SBarry Smith   *newmat = B;
21823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2183f6d58c54SBarry Smith }
2184f6d58c54SBarry Smith 
2185d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx)
2186d71ae5a4SJacob Faibussowitsch {
2187b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2188f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2189b1a666ecSBarry Smith 
2190b1a666ecSBarry Smith   PetscFunctionBegin;
2191b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21929566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
21933ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2194b1a666ecSBarry Smith   }
2195b1a666ecSBarry Smith 
219648a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21974e980039SJed Brown 
2198b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2199b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22009566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2201b1a666ecSBarry Smith       its--;
2202b1a666ecSBarry Smith     }
2203b1a666ecSBarry Smith 
2204b1a666ecSBarry Smith     while (its--) {
22059566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22069566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2207b1a666ecSBarry Smith 
2208b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22099566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22109566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2211b1a666ecSBarry Smith 
2212b1a666ecSBarry Smith       /* local sweep */
22139566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2214b1a666ecSBarry Smith     }
2215b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2216b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22179566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2218b1a666ecSBarry Smith       its--;
2219b1a666ecSBarry Smith     }
2220b1a666ecSBarry Smith     while (its--) {
22219566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22229566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2223b1a666ecSBarry Smith 
2224b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22259566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22269566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2227b1a666ecSBarry Smith 
2228b1a666ecSBarry Smith       /* local sweep */
22299566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2230b1a666ecSBarry Smith     }
2231b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2232b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22339566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2234b1a666ecSBarry Smith       its--;
2235b1a666ecSBarry Smith     }
2236b1a666ecSBarry Smith     while (its--) {
22379566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
22389566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2239b1a666ecSBarry Smith 
2240b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22419566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
22429566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2243b1a666ecSBarry Smith 
2244b1a666ecSBarry Smith       /* local sweep */
22459566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2246b1a666ecSBarry Smith     }
2247ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2248b1a666ecSBarry Smith 
22499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
22503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2251b1a666ecSBarry Smith }
2252b1a666ecSBarry Smith 
2253d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions)
2254d71ae5a4SJacob Faibussowitsch {
225547f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2256a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
225747f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
225847f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
225947f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
226047f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
226147f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
226247f7623dSRémi Lacroix   PetscReal   *work;
226347f7623dSRémi Lacroix 
226447f7623dSRémi Lacroix   PetscFunctionBegin;
22659566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22669566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2267857cbf51SRichard Tran Mills   if (type == NORM_2) {
226847f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
226947f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227047f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227147f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
227247f7623dSRémi Lacroix           a_val++;
227347f7623dSRémi Lacroix         }
227447f7623dSRémi Lacroix       }
227547f7623dSRémi Lacroix     }
227647f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
227747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
227847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
227947f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
228047f7623dSRémi Lacroix           b_val++;
228147f7623dSRémi Lacroix         }
228247f7623dSRémi Lacroix       }
228347f7623dSRémi Lacroix     }
2284857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
228547f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
228647f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
228747f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
228847f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
228947f7623dSRémi Lacroix           a_val++;
229047f7623dSRémi Lacroix         }
229147f7623dSRémi Lacroix       }
229247f7623dSRémi Lacroix     }
229347f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
229447f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
229547f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
229647f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
229747f7623dSRémi Lacroix           b_val++;
229847f7623dSRémi Lacroix         }
229947f7623dSRémi Lacroix       }
230047f7623dSRémi Lacroix     }
2301857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
230247f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
230347f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
230447f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
230547f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
230647f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
230747f7623dSRémi Lacroix           a_val++;
230847f7623dSRémi Lacroix         }
230947f7623dSRémi Lacroix       }
231047f7623dSRémi Lacroix     }
231147f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
231247f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
231347f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
231447f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
231547f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
231647f7623dSRémi Lacroix           b_val++;
231747f7623dSRémi Lacroix         }
231847f7623dSRémi Lacroix       }
231947f7623dSRémi Lacroix     }
2320857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2321a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2322a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2323a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2324857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2325a873a8cdSSam Reynolds           a_val++;
2326a873a8cdSSam Reynolds         }
2327a873a8cdSSam Reynolds       }
2328a873a8cdSSam Reynolds     }
2329a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2330a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2331a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2332857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2333a873a8cdSSam Reynolds           b_val++;
2334a873a8cdSSam Reynolds         }
2335a873a8cdSSam Reynolds       }
2336a873a8cdSSam Reynolds     }
2337857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2338857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2339857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2340857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2341857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2342857cbf51SRichard Tran Mills           a_val++;
2343857cbf51SRichard Tran Mills         }
2344857cbf51SRichard Tran Mills       }
2345857cbf51SRichard Tran Mills     }
2346857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2347857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2348857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2349857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2350857cbf51SRichard Tran Mills           b_val++;
2351857cbf51SRichard Tran Mills         }
2352857cbf51SRichard Tran Mills       }
2353857cbf51SRichard Tran Mills     }
2354857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2355857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23561c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
235747f7623dSRémi Lacroix   } else {
23581c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
235947f7623dSRémi Lacroix   }
23609566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2361857cbf51SRichard Tran Mills   if (type == NORM_2) {
2362a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2363857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2364a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
236547f7623dSRémi Lacroix   }
23663ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
236747f7623dSRémi Lacroix }
236847f7623dSRémi Lacroix 
2369d71ae5a4SJacob Faibussowitsch PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values)
2370d71ae5a4SJacob Faibussowitsch {
2371bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2372bbead8a2SBarry Smith 
2373bbead8a2SBarry Smith   PetscFunctionBegin;
23749566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23757b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23767b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23777b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
23783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2379bbead8a2SBarry Smith }
2380bbead8a2SBarry Smith 
2381d71ae5a4SJacob Faibussowitsch PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a)
2382d71ae5a4SJacob Faibussowitsch {
23837d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23846f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23857d68702bSBarry Smith 
23867d68702bSBarry Smith   PetscFunctionBegin;
23876f33a894SBarry Smith   if (!Y->preallocated) {
23889566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23896f33a894SBarry Smith   } else if (!aij->nz) {
2390b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23919566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2392b83222d8SBarry Smith     aij->nonew = nonew;
23937d68702bSBarry Smith   }
23949566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23953ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
23967d68702bSBarry Smith }
23978c7482ecSBarry Smith 
2398d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d)
2399d71ae5a4SJacob Faibussowitsch {
24003b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
24013b49f96aSBarry Smith 
24023b49f96aSBarry Smith   PetscFunctionBegin;
24035f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
24049566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
24053b49f96aSBarry Smith   if (d) {
24063b49f96aSBarry Smith     PetscInt rstart;
24079566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
24083b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
24093b49f96aSBarry Smith   }
24103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24113b49f96aSBarry Smith }
24123b49f96aSBarry Smith 
2413d71ae5a4SJacob Faibussowitsch PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a)
2414d71ae5a4SJacob Faibussowitsch {
2415a5b7ff6bSBarry Smith   PetscFunctionBegin;
2416a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
24173ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2418a5b7ff6bSBarry Smith }
2419a5b7ff6bSBarry Smith 
24203964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2421cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2422cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2423cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
242497304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
24257c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24267c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2427f4259b30SLisandro Dalcin                                        NULL,
2428f4259b30SLisandro Dalcin                                        NULL,
2429f4259b30SLisandro Dalcin                                        NULL,
2430f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2431f4259b30SLisandro Dalcin                                        NULL,
2432f4259b30SLisandro Dalcin                                        NULL,
2433b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2434cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
243597304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
24367fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2437cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2438cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2439cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
244097304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2441cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2442cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2443cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2444d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2445f4259b30SLisandro Dalcin                                        NULL,
2446f4259b30SLisandro Dalcin                                        NULL,
2447f4259b30SLisandro Dalcin                                        NULL,
2448f4259b30SLisandro Dalcin                                        NULL,
244926cec326SBarry Smith                                        /*29*/ MatSetUp_MPI_Hash,
2450f4259b30SLisandro Dalcin                                        NULL,
2451f4259b30SLisandro Dalcin                                        NULL,
2452a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2453f4259b30SLisandro Dalcin                                        NULL,
2454d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2455f4259b30SLisandro Dalcin                                        NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
2457f4259b30SLisandro Dalcin                                        NULL,
2458f4259b30SLisandro Dalcin                                        NULL,
2459d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24607dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2461cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2462cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24633c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2464f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2465cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24667d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2467f4259b30SLisandro Dalcin                                        NULL,
24686f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2469f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2470f4259b30SLisandro Dalcin                                        NULL,
2471f4259b30SLisandro Dalcin                                        NULL,
2472f4259b30SLisandro Dalcin                                        NULL,
2473f4259b30SLisandro Dalcin                                        NULL,
247493dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2475f4259b30SLisandro Dalcin                                        NULL,
2476cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
247782094794SBarry Smith                                        MatPermute_MPIBAIJ,
2478cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24797dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2480f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2481f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2482f4259b30SLisandro Dalcin                                        NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
2484f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        NULL,
2487f4259b30SLisandro Dalcin                                        NULL,
2488f4259b30SLisandro Dalcin                                        NULL,
2489d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2490f4259b30SLisandro Dalcin                                        NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2495f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2496f4259b30SLisandro Dalcin                                        NULL,
2497f4259b30SLisandro Dalcin                                        NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
25035bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2504f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2510f4259b30SLisandro Dalcin                                        NULL,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
2518f4259b30SLisandro Dalcin                                        NULL,
2519f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
25222726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                        /*104*/ NULL,
252599cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25268c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2527f4259b30SLisandro Dalcin                                        NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2530f4259b30SLisandro Dalcin                                        NULL,
2531f4259b30SLisandro Dalcin                                        NULL,
2532f4259b30SLisandro Dalcin                                        NULL,
25333b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2534d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2535f4259b30SLisandro Dalcin                                        NULL,
25364683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2537f4259b30SLisandro Dalcin                                        NULL,
2538f4259b30SLisandro Dalcin                                        NULL,
2539f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2540f4259b30SLisandro Dalcin                                        NULL,
2541f4259b30SLisandro Dalcin                                        NULL,
2542f4259b30SLisandro Dalcin                                        NULL,
2543e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2544f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2545a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25463964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2547f4259b30SLisandro Dalcin                                        NULL,
2548f4259b30SLisandro Dalcin                                        NULL,
2549f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2550f4259b30SLisandro Dalcin                                        NULL,
2551f4259b30SLisandro Dalcin                                        NULL,
2552f4259b30SLisandro Dalcin                                        NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2555f4259b30SLisandro Dalcin                                        NULL,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        NULL,
2558f4259b30SLisandro Dalcin                                        NULL,
255946533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2560f4259b30SLisandro Dalcin                                        NULL,
2561f4259b30SLisandro Dalcin                                        NULL,
2562bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2563f4259b30SLisandro Dalcin                                        NULL,
2564d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2565d70f29a3SPierre Jolivet                                        NULL,
2566d70f29a3SPierre Jolivet                                        NULL,
256799a7f59eSMark Adams                                        NULL,
256899a7f59eSMark Adams                                        NULL,
25697fb60732SBarry Smith                                        NULL,
2570dec0b466SHong Zhang                                        /*150*/ NULL,
2571dec0b466SHong Zhang                                        NULL};
257279bdfe76SSatish Balay 
2573cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2574c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2575d94109b8SHong Zhang 
2576d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[])
2577d71ae5a4SJacob Faibussowitsch {
2578b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2579f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2580f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2581f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2582d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25833bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2584aac34f13SBarry Smith 
2585aac34f13SBarry Smith   PetscFunctionBegin;
25869566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25879566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25909566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2591d0f46423SBarry Smith   m      = B->rmap->n / bs;
2592d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2593d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2594d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2595b8d659d7SLisandro Dalcin 
25965f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
25979566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2598aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2599cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
26005f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2601b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
260237cd3c0dSBarry Smith     dlen   = 0;
260337cd3c0dSBarry Smith     olen   = 0;
2604cf12db73SBarry Smith     JJ     = jj + ii[i];
2605b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
260637cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
260737cd3c0dSBarry Smith       else dlen++;
2608aac34f13SBarry Smith       JJ++;
2609aac34f13SBarry Smith     }
261037cd3c0dSBarry Smith     d_nnz[i] = dlen;
261137cd3c0dSBarry Smith     o_nnz[i] = olen;
2612aac34f13SBarry Smith   }
26139566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
26149566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2615aac34f13SBarry Smith 
2616b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
261748a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2618b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2619b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2620cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2621cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2622bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2623cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
26249566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
26253adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
26263adadaf3SJed Brown       PetscInt j;
26273adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
26283adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
26299566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
26303adadaf3SJed Brown       }
26313adadaf3SJed Brown     }
2632aac34f13SBarry Smith   }
2633aac34f13SBarry Smith 
26349566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26353bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26363bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
26389566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
26393bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26403bd0feecSPierre Jolivet 
26419566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
26423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2643aac34f13SBarry Smith }
2644aac34f13SBarry Smith 
2645aac34f13SBarry Smith /*@C
264611a5261eSBarry Smith   MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in `MATBAIJ` format using the given nonzero structure and (optional) numerical values
2647aac34f13SBarry Smith 
2648d083f849SBarry Smith   Collective
2649aac34f13SBarry Smith 
2650aac34f13SBarry Smith   Input Parameters:
26511c4f3114SJed Brown + B  - the matrix
2652dfb205c3SBarry Smith . bs - the block size
265320f4b53cSBarry Smith . i  - the indices into `j` for the start of each local row (starts with zero)
2654aac34f13SBarry Smith . j  - the column indices for each local row (starts with zero) these must be sorted for each row
2655aac34f13SBarry Smith - v  - optional values in the matrix
2656aac34f13SBarry Smith 
2657664954b6SBarry Smith   Level: advanced
2658aac34f13SBarry Smith 
265995452b02SPatrick Sanan   Notes:
266011a5261eSBarry Smith   The order of the entries in values is specified by the `MatOption` `MAT_ROW_ORIENTED`.  For example, C programs
266111a5261eSBarry Smith   may want to use the default `MAT_ROW_ORIENTED` with value `PETSC_TRUE` and use an array v[nnz][bs][bs] where the second index is
26623adadaf3SJed Brown   over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
266311a5261eSBarry Smith   `MAT_ROW_ORIENTED` with value `PETSC_FALSE` and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26643adadaf3SJed Brown   block column and the second index is over columns within a block.
26653adadaf3SJed Brown 
2666664954b6SBarry Smith   Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2667664954b6SBarry Smith 
266867be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ`
2669aac34f13SBarry Smith @*/
2670d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[])
2671d71ae5a4SJacob Faibussowitsch {
2672aac34f13SBarry Smith   PetscFunctionBegin;
26736ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26746ba663aaSJed Brown   PetscValidType(B, 1);
26756ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2676cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
26773ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2678aac34f13SBarry Smith }
2679aac34f13SBarry Smith 
2680d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz)
2681d71ae5a4SJacob Faibussowitsch {
2682ad79cf63SBarry Smith   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
2683535b19f3SBarry Smith   PetscInt     i;
26845d2a9ed1SStefano Zampini   PetscMPIInt  size;
2685a23d5eceSKris Buschelman 
2686a23d5eceSKris Buschelman   PetscFunctionBegin;
2687ad79cf63SBarry Smith   if (B->hash_active) {
2688aea10558SJacob Faibussowitsch     B->ops[0]      = b->cops;
2689ad79cf63SBarry Smith     B->hash_active = PETSC_FALSE;
2690ad79cf63SBarry Smith   }
2691ad79cf63SBarry Smith   if (!B->preallocated) PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
26929566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
26939566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26949566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26959566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2696899cda47SBarry Smith 
2697a23d5eceSKris Buschelman   if (d_nnz) {
2698ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]);
2699a23d5eceSKris Buschelman   }
2700a23d5eceSKris Buschelman   if (o_nnz) {
2701ad540459SPierre Jolivet     for (i = 0; i < B->rmap->n / bs; i++) PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]);
2702a23d5eceSKris Buschelman   }
2703a23d5eceSKris Buschelman 
2704a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2705d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2706d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2707d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2708d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2709a23d5eceSKris Buschelman 
2710ad540459SPierre Jolivet   for (i = 0; i <= b->size; i++) b->rangebs[i] = B->rmap->range[i] / bs;
2711d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2712d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2713d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2714d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2715a23d5eceSKris Buschelman 
2716cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
2717eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&b->colmap));
2718cb7b82ddSBarry Smith #else
27199566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2720cb7b82ddSBarry Smith #endif
27219566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27229566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27239566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2724cb7b82ddSBarry Smith 
27259566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
27269566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27279566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
27289566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
27299566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
2730cb7b82ddSBarry Smith 
2731ad79cf63SBarry Smith   PetscCall(MatDestroy(&b->A));
27329566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
27339566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
27349566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->A, MATSEQBAIJ));
2735a23d5eceSKris Buschelman 
27369566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
27379566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2738526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2739cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2740cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
27413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2742a23d5eceSKris Buschelman }
2743a23d5eceSKris Buschelman 
27447087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
27457087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
27465bf65638SKris Buschelman 
2747d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj)
2748d71ae5a4SJacob Faibussowitsch {
274982094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
275082094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
275182094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
275282094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
275382094794SBarry Smith 
275482094794SBarry Smith   PetscFunctionBegin;
27559566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
275682094794SBarry Smith   ii[0] = 0;
275782094794SBarry Smith   for (i = 0; i < M; i++) {
275808401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
275908401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
276082094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27615ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27625ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27639371c9d4SSatish Balay       if (jd[j] == i) {
27649371c9d4SSatish Balay         ii[i + 1]--;
27659371c9d4SSatish Balay         break;
27669371c9d4SSatish Balay       }
27675ee9ba1cSJed Brown     }
276882094794SBarry Smith   }
27699566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
277082094794SBarry Smith   cnt = 0;
277182094794SBarry Smith   for (i = 0; i < M; i++) {
277282094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
277382094794SBarry Smith       if (garray[jo[j]] > rstart) break;
277482094794SBarry Smith       jj[cnt++] = garray[jo[j]];
277582094794SBarry Smith     }
277682094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
2777ad540459SPierre Jolivet       if (jd[k] != i) jj[cnt++] = rstart + jd[k];
277882094794SBarry Smith     }
2779ad540459SPierre Jolivet     for (; j < io[i + 1]; j++) jj[cnt++] = garray[jo[j]];
278082094794SBarry Smith   }
27819566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
27823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
278382094794SBarry Smith }
278482094794SBarry Smith 
2785c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
278662471d69SBarry Smith 
2787cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2788b2573a8aSBarry Smith 
2789d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat)
2790d71ae5a4SJacob Faibussowitsch {
279162471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
279285a69837SSatish Balay   Mat_MPIAIJ  *b;
27935f80ce2aSJacob Faibussowitsch   Mat          B;
279462471d69SBarry Smith 
279562471d69SBarry Smith   PetscFunctionBegin;
27965f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
279762471d69SBarry Smith 
27980f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
27990f6d62edSLisandro Dalcin     B = *newmat;
28000f6d62edSLisandro Dalcin   } else {
28019566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
28029566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
28039566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
28049566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
28059566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
28069566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
28070f6d62edSLisandro Dalcin   }
280862471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
280962471d69SBarry Smith 
28100f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28119566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28129566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28130f6d62edSLisandro Dalcin   } else {
28147c612885SStefano Zampini     PetscInt   *garray = a->garray;
28157c612885SStefano Zampini     Mat_SeqAIJ *bB;
28167c612885SStefano Zampini     PetscInt    bs, nnz;
28179566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28189566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28197c612885SStefano Zampini     /* just clear out the data structure */
28207c612885SStefano Zampini     PetscCall(MatDisAssemble_MPIAIJ(B));
28219566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28229566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28237c612885SStefano Zampini 
28247c612885SStefano Zampini     /* Global numbering for b->B columns */
28257c612885SStefano Zampini     bB  = (Mat_SeqAIJ *)b->B->data;
28267c612885SStefano Zampini     bs  = A->rmap->bs;
28277c612885SStefano Zampini     nnz = bB->i[A->rmap->n];
28287c612885SStefano Zampini     for (PetscInt k = 0; k < nnz; k++) {
28297c612885SStefano Zampini       PetscInt bj = bB->j[k] / bs;
28307c612885SStefano Zampini       PetscInt br = bB->j[k] % bs;
28317c612885SStefano Zampini       bB->j[k]    = garray[bj] * bs + br;
28327c612885SStefano Zampini     }
28330f6d62edSLisandro Dalcin   }
28349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
28359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
28360f6d62edSLisandro Dalcin 
2837511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28389566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
283962471d69SBarry Smith   } else {
284062471d69SBarry Smith     *newmat = B;
284162471d69SBarry Smith   }
28423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
284362471d69SBarry Smith }
284462471d69SBarry Smith 
28450bad9183SKris Buschelman /*MC
2846fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28470bad9183SKris Buschelman 
28480bad9183SKris Buschelman    Options Database Keys:
284911a5261eSBarry Smith + -mat_type mpibaij - sets the matrix type to `MATMPIBAIJ` during a call to `MatSetFromOptions()`
28508c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28516679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
285267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28530bad9183SKris Buschelman 
28540bad9183SKris Buschelman    Level: beginner
28550cd7f59aSBarry Smith 
285611a5261eSBarry Smith    Note:
28575e0ad47dSPierre Jolivet     `MatSetOption(A, MAT_STRUCTURE_ONLY, PETSC_TRUE)` may be called for this matrix type. In this no
285811a5261eSBarry Smith     space is allocated for the nonzero entries and any entries passed with `MatSetValues()` are ignored
28590bad9183SKris Buschelman 
28605e0ad47dSPierre Jolivet .seealso: `Mat`, `MATBAIJ`, `MATSEQBAIJ`, `MatCreateBAIJ`
28610bad9183SKris Buschelman M*/
28620bad9183SKris Buschelman 
2863cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2864c0cdd4a1SDahai Guo 
2865d71ae5a4SJacob Faibussowitsch PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2866d71ae5a4SJacob Faibussowitsch {
2867273d9f13SBarry Smith   Mat_MPIBAIJ *b;
286894ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2869273d9f13SBarry Smith 
2870273d9f13SBarry Smith   PetscFunctionBegin;
28714dfa11a4SJacob Faibussowitsch   PetscCall(PetscNew(&b));
287282502324SSatish Balay   B->data      = (void *)b;
2873aea10558SJacob Faibussowitsch   B->ops[0]    = MatOps_Values;
2874273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2875273d9f13SBarry Smith 
2876273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28779566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28789566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2879273d9f13SBarry Smith 
2880273d9f13SBarry Smith   /* build local table of row and column ownerships */
28819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2882273d9f13SBarry Smith 
2883273d9f13SBarry Smith   /* build cache for off array entries formed */
28849566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
288526fbe8dcSKarl Rupp 
2886273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28870298fd71SBarry Smith   b->colmap      = NULL;
28880298fd71SBarry Smith   b->garray      = NULL;
2889273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2890273d9f13SBarry Smith 
2891273d9f13SBarry Smith   /* stuff used in block assembly */
2892f4259b30SLisandro Dalcin   b->barray = NULL;
2893273d9f13SBarry Smith 
2894273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2895f4259b30SLisandro Dalcin   b->lvec  = NULL;
2896f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2897273d9f13SBarry Smith 
2898273d9f13SBarry Smith   /* stuff for MatGetRow() */
2899f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2900f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2901273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2902273d9f13SBarry Smith 
2903273d9f13SBarry Smith   /* hash table stuff */
2904f4259b30SLisandro Dalcin   b->ht           = NULL;
2905f4259b30SLisandro Dalcin   b->hd           = NULL;
2906273d9f13SBarry Smith   b->ht_size      = 0;
2907273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2908273d9f13SBarry Smith   b->ht_fact      = 0;
2909273d9f13SBarry Smith   b->ht_total_ct  = 0;
2910273d9f13SBarry Smith   b->ht_insert_ct = 0;
2911273d9f13SBarry Smith 
29127dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29137a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29147a868f3eSHong Zhang 
29159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
29169566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
29179566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
29187ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
29207ea3e4caSstefano_zampini #endif
29219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
29229566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
29239566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
29249566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29259566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
29269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
29279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
29289566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
292994ae4db5SBarry Smith 
2930d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
29319566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
293294ae4db5SBarry Smith   if (flg) {
293394ae4db5SBarry Smith     PetscReal fact = 1.39;
29349566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
29359566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
293694ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29379566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
29389566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
293994ae4db5SBarry Smith   }
2940d0609cedSBarry Smith   PetscOptionsEnd();
29413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2942273d9f13SBarry Smith }
2943273d9f13SBarry Smith 
2944*2920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
2945209238afSKris Buschelman /*MC
2946002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2947209238afSKris Buschelman 
294811a5261eSBarry Smith    This matrix type is identical to `MATSEQBAIJ` when constructed with a single process communicator,
294911a5261eSBarry Smith    and `MATMPIBAIJ` otherwise.
2950209238afSKris Buschelman 
2951209238afSKris Buschelman    Options Database Keys:
295211a5261eSBarry Smith . -mat_type baij - sets the matrix type to `MATBAIJ` during a call to `MatSetFromOptions()`
2953209238afSKris Buschelman 
2954209238afSKris Buschelman   Level: beginner
2955209238afSKris Buschelman 
295667be906fSBarry Smith .seealso: `Mat`, `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2957209238afSKris Buschelman M*/
2958209238afSKris Buschelman 
2959273d9f13SBarry Smith /*@C
296011a5261eSBarry Smith   MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in `MATMPIBAIJ` format
296167be906fSBarry Smith   (block compressed row).
2962273d9f13SBarry Smith 
2963c3339decSBarry Smith   Collective
2964273d9f13SBarry Smith 
2965273d9f13SBarry Smith   Input Parameters:
29661c4f3114SJed Brown + B     - the matrix
296711a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
296867be906fSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
2969273d9f13SBarry Smith . d_nz  - number of block nonzeros per block row in diagonal portion of local
2970273d9f13SBarry Smith            submatrix  (same for all local rows)
2971273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows
2972273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
297367be906fSBarry Smith            row) or `NULL`.  If you plan to factor the matrix you must leave room for the diagonal entry and
297495742e49SBarry Smith            set it even if it is zero.
2975273d9f13SBarry Smith . o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2976273d9f13SBarry Smith            submatrix (same for all local rows).
2977273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the
2978273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
297967be906fSBarry Smith            each block row) or `NULL`.
2980273d9f13SBarry Smith 
298149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2982273d9f13SBarry Smith 
2983273d9f13SBarry Smith   Options Database Keys:
29848c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
298567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
2986273d9f13SBarry Smith 
298767be906fSBarry Smith   Level: intermediate
298867be906fSBarry Smith 
2989273d9f13SBarry Smith   Notes:
299067be906fSBarry Smith   For good matrix assembly performance
299167be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
299267be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
299367be906fSBarry Smith   performance can be increased by more than a factor of 50.
299467be906fSBarry Smith 
299511a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
2996273d9f13SBarry Smith   than it must be used on all processors that share the object for that argument.
2997273d9f13SBarry Smith 
2998273d9f13SBarry Smith   Storage Information:
2999273d9f13SBarry Smith   For a square global matrix we define each processor's diagonal portion
3000273d9f13SBarry Smith   to be its local rows and the corresponding columns (a square submatrix);
3001273d9f13SBarry Smith   each processor's off-diagonal portion encompasses the remainder of the
3002273d9f13SBarry Smith   local matrix (a rectangular submatrix).
3003273d9f13SBarry Smith 
3004273d9f13SBarry Smith   The user can specify preallocated storage for the diagonal part of
300567be906fSBarry Smith   the local submatrix with either `d_nz` or `d_nnz` (not both).  Set
300667be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
3007273d9f13SBarry Smith   memory allocation.  Likewise, specify preallocated storage for the
300867be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
3009273d9f13SBarry Smith 
3010273d9f13SBarry Smith   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3011273d9f13SBarry Smith   the figure below we depict these three local rows and all columns (0-11).
3012273d9f13SBarry Smith 
3013273d9f13SBarry Smith .vb
3014273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3015a4b1a0f6SJed Brown           --------------------------
3016273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3017273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3018273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3019a4b1a0f6SJed Brown           --------------------------
3020273d9f13SBarry Smith .ve
3021273d9f13SBarry Smith 
3022273d9f13SBarry Smith   Thus, any entries in the d locations are stored in the d (diagonal)
3023273d9f13SBarry Smith   submatrix, and any entries in the o locations are stored in the
3024273d9f13SBarry Smith   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
302511a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
3026273d9f13SBarry Smith 
302767be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
302867be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
3029273d9f13SBarry Smith   In general, for PDE problems in which most nonzeros are near the diagonal,
303020f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
3031273d9f13SBarry Smith 
303211a5261eSBarry Smith   You can call `MatGetInfo()` to get information on how effective the preallocation was;
3033aa95bbe8SBarry Smith   for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
303467be906fSBarry Smith   You can also run with the option `-info` and look for messages with the string
3035aa95bbe8SBarry Smith   malloc in them to see if additional memory allocation was needed.
3036aa95bbe8SBarry Smith 
303767be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3038273d9f13SBarry Smith @*/
3039d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[])
3040d71ae5a4SJacob Faibussowitsch {
3041273d9f13SBarry Smith   PetscFunctionBegin;
30426ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
30436ba663aaSJed Brown   PetscValidType(B, 1);
30446ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
3045cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
30463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3047273d9f13SBarry Smith }
3048273d9f13SBarry Smith 
3049*2920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-section-header-unknown
305079bdfe76SSatish Balay /*@C
305111a5261eSBarry Smith   MatCreateBAIJ - Creates a sparse parallel matrix in `MATBAIJ` format
305267be906fSBarry Smith   (block compressed row).
305379bdfe76SSatish Balay 
3054d083f849SBarry Smith   Collective
3055db81eaa0SLois Curfman McInnes 
305679bdfe76SSatish Balay   Input Parameters:
3057db81eaa0SLois Curfman McInnes + comm  - MPI communicator
305811a5261eSBarry Smith . bs    - size of block, the blocks are ALWAYS square. One can use `MatSetBlockSizes()` to set a different row and column blocksize but the row
305911a5261eSBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with `MatCreateVecs()`
306011a5261eSBarry Smith . m     - number of local rows (or `PETSC_DECIDE` to have calculated if M is given)
306192e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
306292e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
306311a5261eSBarry Smith . n     - number of local columns (or `PETSC_DECIDE` to have calculated if N is given)
306492e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
306592e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
306611a5261eSBarry Smith . M     - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
306711a5261eSBarry Smith . N     - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
306847a75d0bSBarry Smith . d_nz  - number of nonzero blocks per block row in diagonal portion of local
306979bdfe76SSatish Balay            submatrix  (same for all local rows)
307047a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows
307192e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30720298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
307395742e49SBarry Smith            and set it even if it is zero.
307447a75d0bSBarry Smith . o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
307579bdfe76SSatish Balay            submatrix (same for all local rows).
307647a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the
307792e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30780298fd71SBarry Smith            each block row) or NULL.
307979bdfe76SSatish Balay 
308079bdfe76SSatish Balay   Output Parameter:
308179bdfe76SSatish Balay . A - the matrix
308279bdfe76SSatish Balay 
3083db81eaa0SLois Curfman McInnes   Options Database Keys:
30848c07d4e3SBarry Smith + -mat_block_size            - size of the blocks to use
308567b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
30863ffaccefSLois Curfman McInnes 
308767be906fSBarry Smith   Level: intermediate
308867be906fSBarry Smith 
308967be906fSBarry Smith   Notes:
309067be906fSBarry Smith   For good matrix assembly performance
309167be906fSBarry Smith   the user should preallocate the matrix storage by setting the parameters
309267be906fSBarry Smith   `d_nz` (or `d_nnz`) and `o_nz` (or `o_nnz`).  By setting these parameters accurately,
309367be906fSBarry Smith   performance can be increased by more than a factor of 50.
309467be906fSBarry Smith 
309511a5261eSBarry Smith   It is recommended that one use the `MatCreate()`, `MatSetType()` and/or `MatSetFromOptions()`,
3096f6f02116SRichard Tran Mills   MatXXXXSetPreallocation() paradigm instead of this routine directly.
309711a5261eSBarry Smith   [MatXXXXSetPreallocation() is, for example, `MatSeqBAIJSetPreallocation()`]
3098175b88e8SBarry Smith 
309949a6f317SBarry Smith   If the *_nnz parameter is given then the *_nz parameter is ignored
310049a6f317SBarry Smith 
310147a75d0bSBarry Smith   A nonzero block is any block that as 1 or more nonzeros in it
310247a75d0bSBarry Smith 
310379bdfe76SSatish Balay   The user MUST specify either the local or global matrix dimensions
310479bdfe76SSatish Balay   (possibly both).
310579bdfe76SSatish Balay 
310611a5261eSBarry Smith   If `PETSC_DECIDE` or  `PETSC_DETERMINE` is used for a particular argument on one processor
3107be79a94dSBarry Smith   than it must be used on all processors that share the object for that argument.
3108be79a94dSBarry Smith 
310979bdfe76SSatish Balay   Storage Information:
311079bdfe76SSatish Balay   For a square global matrix we define each processor's diagonal portion
311179bdfe76SSatish Balay   to be its local rows and the corresponding columns (a square submatrix);
311279bdfe76SSatish Balay   each processor's off-diagonal portion encompasses the remainder of the
311379bdfe76SSatish Balay   local matrix (a rectangular submatrix).
311479bdfe76SSatish Balay 
311579bdfe76SSatish Balay   The user can specify preallocated storage for the diagonal part of
311679bdfe76SSatish Balay   the local submatrix with either d_nz or d_nnz (not both).  Set
311767be906fSBarry Smith   `d_nz` = `PETSC_DEFAULT` and `d_nnz` = `NULL` for PETSc to control dynamic
311879bdfe76SSatish Balay   memory allocation.  Likewise, specify preallocated storage for the
311967be906fSBarry Smith   off-diagonal part of the local submatrix with `o_nz` or `o_nnz` (not both).
312079bdfe76SSatish Balay 
312179bdfe76SSatish Balay   Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
312279bdfe76SSatish Balay   the figure below we depict these three local rows and all columns (0-11).
312379bdfe76SSatish Balay 
3124db81eaa0SLois Curfman McInnes .vb
3125db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3126a4b1a0f6SJed Brown           --------------------------
3127db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3128db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3129db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3130a4b1a0f6SJed Brown           --------------------------
3131db81eaa0SLois Curfman McInnes .ve
313279bdfe76SSatish Balay 
313379bdfe76SSatish Balay   Thus, any entries in the d locations are stored in the d (diagonal)
313479bdfe76SSatish Balay   submatrix, and any entries in the o locations are stored in the
313579bdfe76SSatish Balay   o (off-diagonal) submatrix.  Note that the d and the o submatrices are
313611a5261eSBarry Smith   stored simply in the `MATSEQBAIJ` format for compressed row storage.
313779bdfe76SSatish Balay 
313867be906fSBarry Smith   Now `d_nz` should indicate the number of block nonzeros per row in the d matrix,
313967be906fSBarry Smith   and `o_nz` should indicate the number of block nonzeros per row in the o matrix.
314079bdfe76SSatish Balay   In general, for PDE problems in which most nonzeros are near the diagonal,
314120f4b53cSBarry Smith   one expects `d_nz` >> `o_nz`.
314279bdfe76SSatish Balay 
314367be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
314479bdfe76SSatish Balay @*/
3145d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A)
3146d71ae5a4SJacob Faibussowitsch {
3147b24ad042SBarry Smith   PetscMPIInt size;
314879bdfe76SSatish Balay 
3149d64ed03dSBarry Smith   PetscFunctionBegin;
31509566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
31519566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
31529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3153273d9f13SBarry Smith   if (size > 1) {
31549566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
31559566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3156273d9f13SBarry Smith   } else {
31579566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
31589566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
31593914022bSBarry Smith   }
31603ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
316179bdfe76SSatish Balay }
3162026e39d0SSatish Balay 
3163d71ae5a4SJacob Faibussowitsch static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat)
3164d71ae5a4SJacob Faibussowitsch {
31650ac07820SSatish Balay   Mat          mat;
31660ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3167b24ad042SBarry Smith   PetscInt     len = 0;
31680ac07820SSatish Balay 
3169d64ed03dSBarry Smith   PetscFunctionBegin;
3170f4259b30SLisandro Dalcin   *newmat = NULL;
31719566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31729566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31739566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31747fff6886SHong Zhang 
3175d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3176273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
31770ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
31787fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
31797fff6886SHong Zhang 
3180273d9f13SBarry Smith   a             = (Mat_MPIBAIJ *)mat->data;
3181d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
31820ac07820SSatish Balay   a->bs2        = oldmat->bs2;
31830ac07820SSatish Balay   a->mbs        = oldmat->mbs;
31840ac07820SSatish Balay   a->nbs        = oldmat->nbs;
31850ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
31860ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
31870ac07820SSatish Balay 
31889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
31899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3190899cda47SBarry Smith 
31910ac07820SSatish Balay   a->size         = oldmat->size;
31920ac07820SSatish Balay   a->rank         = oldmat->rank;
3193aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3194aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3195f4259b30SLisandro Dalcin   a->rowindices   = NULL;
3196f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
31970ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
3198f4259b30SLisandro Dalcin   a->barray       = NULL;
3199899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3200899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3201899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3202899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32030ac07820SSatish Balay 
3204133cdb44SSatish Balay   /* hash table stuff */
3205f4259b30SLisandro Dalcin   a->ht           = NULL;
3206f4259b30SLisandro Dalcin   a->hd           = NULL;
3207133cdb44SSatish Balay   a->ht_size      = 0;
3208133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
320925fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3210133cdb44SSatish Balay   a->ht_total_ct  = 0;
3211133cdb44SSatish Balay   a->ht_insert_ct = 0;
3212133cdb44SSatish Balay 
32139566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
32140ac07820SSatish Balay   if (oldmat->colmap) {
3215aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3216eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapIDuplicate(oldmat->colmap, &a->colmap));
321748e59246SSatish Balay #else
32189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
32199566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
322048e59246SSatish Balay #endif
3221f4259b30SLisandro Dalcin   } else a->colmap = NULL;
32224beb1cfeSHong Zhang 
32230ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
32249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
32259566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3226f4259b30SLisandro Dalcin   } else a->garray = NULL;
32270ac07820SSatish Balay 
32289566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
32299566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
32309566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
32317fff6886SHong Zhang 
32329566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
32339566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
32349566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
32350ac07820SSatish Balay   *newmat = mat;
32363ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
32370ac07820SSatish Balay }
323857b952d6SSatish Balay 
3239618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3240d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer)
3241d71ae5a4SJacob Faibussowitsch {
3242b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3243b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3244b51a4376SLisandro Dalcin   PetscScalar *matvals;
3245b51a4376SLisandro Dalcin 
3246b51a4376SLisandro Dalcin   PetscFunctionBegin;
32479566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3248b51a4376SLisandro Dalcin 
3249b51a4376SLisandro Dalcin   /* read in matrix header */
32509566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
32515f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
32529371c9d4SSatish Balay   M  = header[1];
32539371c9d4SSatish Balay   N  = header[2];
32549371c9d4SSatish Balay   nz = header[3];
32555f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
32565f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
32575f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3258b51a4376SLisandro Dalcin 
3259b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32609566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3261618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3262618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3263618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3264b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3265b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3266b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32679566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32689566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3269b51a4376SLisandro Dalcin 
3270b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32719566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32725f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32739566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32749566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32759566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32769566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32779371c9d4SSatish Balay   mbs = m / bs;
32789371c9d4SSatish Balay   nbs = n / bs;
3279b51a4376SLisandro Dalcin 
3280b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32819566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32829566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32839371c9d4SSatish Balay   rowidxs[0] = 0;
32849371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
32851c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32865f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3287b51a4376SLisandro Dalcin 
3288b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32899566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32909566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
32919566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3292b51a4376SLisandro Dalcin 
3293b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3294b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3295b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3296618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3297b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3298b51a4376SLisandro Dalcin 
32999566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
33009566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33019566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
33029566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3303b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
33049566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
33059566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3306618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3307618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3308618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3309618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3310618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3311618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3312618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3313b51a4376SLisandro Dalcin             } else {
33149566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3315b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3316b51a4376SLisandro Dalcin             }
3317b51a4376SLisandro Dalcin           }
3318618cc2edSLisandro Dalcin         }
3319618cc2edSLisandro Dalcin       }
3320618cc2edSLisandro Dalcin     }
33219566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33229566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33239566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33249566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
33259566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3326b51a4376SLisandro Dalcin   }
3327b51a4376SLisandro Dalcin 
3328b51a4376SLisandro Dalcin   /* store matrix values */
3329b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3330b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
33319566063dSJacob Faibussowitsch     PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES));
3332b51a4376SLisandro Dalcin   }
3333b51a4376SLisandro Dalcin 
33349566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33359566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
33369566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
33379566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
33383ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3339b51a4376SLisandro Dalcin }
3340b51a4376SLisandro Dalcin 
3341d71ae5a4SJacob Faibussowitsch PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer)
3342d71ae5a4SJacob Faibussowitsch {
33437f489da9SVaclav Hapla   PetscBool isbinary;
33444683f7a4SShri Abhyankar 
33454683f7a4SShri Abhyankar   PetscFunctionBegin;
33469566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
33475f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
33489566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
33493ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33504683f7a4SShri Abhyankar }
33514683f7a4SShri Abhyankar 
3352133cdb44SSatish Balay /*@
335311a5261eSBarry Smith   MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the matrices hash table
3354133cdb44SSatish Balay 
3355133cdb44SSatish Balay   Input Parameters:
3356a2b725a8SWilliam Gropp + mat  - the matrix
3357a2b725a8SWilliam Gropp - fact - factor
3358133cdb44SSatish Balay 
335911a5261eSBarry Smith   Options Database Key:
336011a5261eSBarry Smith . -mat_use_hash_table <fact> - provide the factor
3361fee21e36SBarry Smith 
33628c890885SBarry Smith   Level: advanced
33638c890885SBarry Smith 
336467be906fSBarry Smith .seealso: `Mat`, `MATMPIBAIJ`, `MatSetOption()`
3365133cdb44SSatish Balay @*/
3366d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact)
3367d71ae5a4SJacob Faibussowitsch {
33685bf65638SKris Buschelman   PetscFunctionBegin;
3369cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33703ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
33715bf65638SKris Buschelman }
33725bf65638SKris Buschelman 
3373d71ae5a4SJacob Faibussowitsch PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact)
3374d71ae5a4SJacob Faibussowitsch {
337525fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3376133cdb44SSatish Balay 
3377133cdb44SSatish Balay   PetscFunctionBegin;
3378133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3379133cdb44SSatish Balay   baij->ht_fact = fact;
33803ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3381133cdb44SSatish Balay }
3382f2a5309cSSatish Balay 
3383d71ae5a4SJacob Faibussowitsch PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[])
3384d71ae5a4SJacob Faibussowitsch {
3385f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3386ab4d48faSStefano Zampini   PetscBool    flg;
33875fd66863SKarl Rupp 
3388f2a5309cSSatish Balay   PetscFunctionBegin;
33899566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33905f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
339121e72a00SBarry Smith   if (Ad) *Ad = a->A;
339221e72a00SBarry Smith   if (Ao) *Ao = a->B;
339321e72a00SBarry Smith   if (colmap) *colmap = a->garray;
33943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3395f2a5309cSSatish Balay }
339685535b8eSBarry Smith 
339785535b8eSBarry Smith /*
339885535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
339985535b8eSBarry Smith */
340085535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
340185535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
340285535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
340385535b8eSBarry Smith   #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
340485535b8eSBarry Smith #endif
340585535b8eSBarry Smith 
3406*2920cce0SJacob Faibussowitsch // PetscClangLinter pragma disable: -fdoc-synopsis-matching-symbol-name
340785535b8eSBarry Smith /*@C
340811a5261eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to `MatSetValuesBlocked()`
340985535b8eSBarry Smith 
3410c3339decSBarry Smith   Collective
341185535b8eSBarry Smith 
341285535b8eSBarry Smith   Input Parameters:
3413fe59aa6dSJacob Faibussowitsch + matin  - the matrix
341485535b8eSBarry Smith . min    - number of input rows
341585535b8eSBarry Smith . im     - input rows
341685535b8eSBarry Smith . nin    - number of input columns
341785535b8eSBarry Smith . in     - input columns
341885535b8eSBarry Smith . v      - numerical values input
341911a5261eSBarry Smith - addvin - `INSERT_VALUES` or `ADD_VALUES`
342085535b8eSBarry Smith 
342120f4b53cSBarry Smith   Level: advanced
342220f4b53cSBarry Smith 
3423fe59aa6dSJacob Faibussowitsch   Developer Notes:
342411a5261eSBarry Smith   This has a complete copy of `MatSetValuesBlocked_MPIBAIJ()` which is terrible code un-reuse.
342585535b8eSBarry Smith 
342667be906fSBarry Smith .seealso: `Mat`, `MatSetValuesBlocked()`
342785535b8eSBarry Smith @*/
3428d71ae5a4SJacob Faibussowitsch PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin)
3429d71ae5a4SJacob Faibussowitsch {
343085535b8eSBarry Smith   /* convert input arguments to C version */
343185535b8eSBarry Smith   Mat        mat = *matin;
343285535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
343385535b8eSBarry Smith   InsertMode addv = *addvin;
343485535b8eSBarry Smith 
343585535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
343685535b8eSBarry Smith   const MatScalar *value;
343785535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3438ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
343985535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
344085535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3441d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
344285535b8eSBarry Smith 
344385535b8eSBarry Smith   PetscFunctionBegin;
344485535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
344526fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34465f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
34475f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
344885535b8eSBarry Smith   if (mat->assembled) {
344985535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
345085535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
345185535b8eSBarry Smith   }
34529566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
345385535b8eSBarry Smith 
345485535b8eSBarry Smith   if (!barray) {
34559566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
345685535b8eSBarry Smith     baij->barray = barray;
345785535b8eSBarry Smith   }
345885535b8eSBarry Smith 
345926fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
346026fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
346126fbe8dcSKarl Rupp 
346285535b8eSBarry Smith   for (i = 0; i < m; i++) {
346385535b8eSBarry Smith     if (im[i] < 0) continue;
34646bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
346585535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
346685535b8eSBarry Smith       row = im[i] - rstart;
346785535b8eSBarry Smith       for (j = 0; j < n; j++) {
346885535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
346985535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
347085535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
347185535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
347285535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
347385535b8eSBarry Smith         } else { /* Here a copy is required */
347485535b8eSBarry Smith           if (roworiented) {
347585535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
347685535b8eSBarry Smith           } else {
347785535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
347885535b8eSBarry Smith           }
347985535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
3480ad540459SPierre Jolivet             for (jj = 0; jj < bs; jj++) *barray++ = *value++;
348185535b8eSBarry Smith           }
348285535b8eSBarry Smith           barray -= bs2;
348385535b8eSBarry Smith         }
348485535b8eSBarry Smith 
348585535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
348685535b8eSBarry Smith           col = in[j] - cstart;
34879566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3488f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3489f7d195e4SLawrence Mitchell           continue;
3490f7d195e4SLawrence Mitchell         } else {
3491f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
349285535b8eSBarry Smith           if (mat->was_assembled) {
349348a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
349485535b8eSBarry Smith 
349585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
349685535b8eSBarry Smith   #if defined(PETSC_USE_CTABLE)
34979371c9d4SSatish Balay             {
34989371c9d4SSatish Balay               PetscInt data;
3499eec179cfSJacob Faibussowitsch               PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &data));
350008401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350185535b8eSBarry Smith             }
350285535b8eSBarry Smith   #else
350308401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
350485535b8eSBarry Smith   #endif
350585535b8eSBarry Smith #endif
350685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
3507eec179cfSJacob Faibussowitsch             PetscCall(PetscHMapIGetWithDefault(baij->colmap, in[j] + 1, 0, &col));
350885535b8eSBarry Smith             col = (col - 1) / bs;
350985535b8eSBarry Smith #else
351085535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
351185535b8eSBarry Smith #endif
351285535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
35139566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
351485535b8eSBarry Smith               col = in[j];
351585535b8eSBarry Smith             }
351626fbe8dcSKarl Rupp           } else col = in[j];
35179566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
351885535b8eSBarry Smith         }
351985535b8eSBarry Smith       }
352085535b8eSBarry Smith     } else {
352185535b8eSBarry Smith       if (!baij->donotstash) {
352285535b8eSBarry Smith         if (roworiented) {
35239566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
352485535b8eSBarry Smith         } else {
35259566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
352685535b8eSBarry Smith         }
352785535b8eSBarry Smith       }
352885535b8eSBarry Smith     }
352985535b8eSBarry Smith   }
353085535b8eSBarry Smith 
353185535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35329566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
35333ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
353485535b8eSBarry Smith }
3535dfb205c3SBarry Smith 
3536dfb205c3SBarry Smith /*@
353711a5261eSBarry Smith   MatCreateMPIBAIJWithArrays - creates a `MATMPIBAIJ` matrix using arrays that contain in standard block
3538dfb205c3SBarry Smith   CSR format the local rows.
3539dfb205c3SBarry Smith 
3540d083f849SBarry Smith   Collective
3541dfb205c3SBarry Smith 
3542dfb205c3SBarry Smith   Input Parameters:
3543dfb205c3SBarry Smith + comm - MPI communicator
3544dfb205c3SBarry Smith . bs   - the block size, only a block size of 1 is supported
354511a5261eSBarry Smith . m    - number of local rows (Cannot be `PETSC_DECIDE`)
3546dfb205c3SBarry Smith . n    - This value should be the same as the local size used in creating the
354711a5261eSBarry Smith        x vector for the matrix-vector product y = Ax. (or `PETSC_DECIDE` to have
3548dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
354911a5261eSBarry Smith . M    - number of global rows (or `PETSC_DETERMINE` to have calculated if m is given)
355011a5261eSBarry Smith . N    - number of global columns (or `PETSC_DETERMINE` to have calculated if n is given)
3551483a2f95SBarry Smith . i    - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3552dfb205c3SBarry Smith . j    - column indices
3553dfb205c3SBarry Smith - a    - matrix values
3554dfb205c3SBarry Smith 
3555dfb205c3SBarry Smith   Output Parameter:
3556dfb205c3SBarry Smith . mat - the matrix
3557dfb205c3SBarry Smith 
3558dfb205c3SBarry Smith   Level: intermediate
3559dfb205c3SBarry Smith 
3560dfb205c3SBarry Smith   Notes:
356167be906fSBarry Smith   The `i`, `j`, and `a` arrays ARE copied by this routine into the internal format used by PETSc;
3562dfb205c3SBarry Smith   thus you CANNOT change the matrix entries by changing the values of a[] after you have
356311a5261eSBarry Smith   called this routine. Use `MatCreateMPIAIJWithSplitArrays()` to avoid needing to copy the arrays.
3564dfb205c3SBarry Smith 
35653adadaf3SJed Brown   The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35663adadaf3SJed Brown   the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35673adadaf3SJed Brown   block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35683adadaf3SJed Brown   with column-major ordering within blocks.
35693adadaf3SJed Brown 
357067be906fSBarry Smith   The `i` and `j` indices are 0 based, and i indices are indices corresponding to the local `j` array.
3571dfb205c3SBarry Smith 
357267be906fSBarry Smith .seealso: `Mat`, `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
3573db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3574dfb205c3SBarry Smith @*/
3575d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat)
3576d71ae5a4SJacob Faibussowitsch {
3577dfb205c3SBarry Smith   PetscFunctionBegin;
35785f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35795f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35809566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35819566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35829566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35839566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35849566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35859566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35869566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35879566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
35883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3589dfb205c3SBarry Smith }
3590e561ad89SHong Zhang 
3591d71ae5a4SJacob Faibussowitsch PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat)
3592d71ae5a4SJacob Faibussowitsch {
3593bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3594bd153df0SHong Zhang   PetscInt    *indx;
3595bd153df0SHong Zhang   PetscScalar *values;
3596e561ad89SHong Zhang 
3597e561ad89SHong Zhang   PetscFunctionBegin;
35989566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3599bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3600bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
36012c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3602bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
360377f764caSHong Zhang     PetscMPIInt  rank, size;
3604e561ad89SHong Zhang 
36059566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36069371c9d4SSatish Balay     mbs = m / bs;
36079371c9d4SSatish Balay     Nbs = N / cbs;
360848a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3609da91a574SPierre Jolivet     nbs = n / cbs;
3610e561ad89SHong Zhang 
36119566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3612d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
361377f764caSHong Zhang 
36149566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
36159566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
361677f764caSHong Zhang     if (rank == size - 1) {
361777f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36185f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
361977f764caSHong Zhang     }
362077f764caSHong Zhang 
3621d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3622bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
36239566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3624647a6520SHong Zhang       nnz = nnz / bs;
3625647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
36269566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
36279566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3628e561ad89SHong Zhang     }
36299566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3630e561ad89SHong Zhang 
36319566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
36329566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
36339566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
36349566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
36359566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
36369566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3637d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
36389566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3639e561ad89SHong Zhang   }
3640e561ad89SHong Zhang 
3641bd153df0SHong Zhang   /* numeric phase */
36429566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
36439566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3644e561ad89SHong Zhang 
3645e561ad89SHong Zhang   for (i = 0; i < m; i++) {
36469566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3647e561ad89SHong Zhang     Ii = i + rstart;
36489566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
36499566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3650e561ad89SHong Zhang   }
36519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
36529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
36533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
3654e561ad89SHong Zhang }
3655