xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 2e956fe4fc852fabc23b437482e1fb7b77fddb0d)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat,MatType,MatReuse,Mat*);
97ea3e4caSstefano_zampini #endif
107ea3e4caSstefano_zampini 
11985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
127843d17aSBarry Smith {
137843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ*)A->data;
144e879edeSHong Zhang   PetscInt          i,*idxb = NULL,m = A->rmap->n,bs = A->cmap->bs;
154e879edeSHong Zhang   PetscScalar       *va,*vv;
164e879edeSHong Zhang   Vec               vB,vA;
174e879edeSHong Zhang   const PetscScalar *vb;
187843d17aSBarry Smith 
197843d17aSBarry Smith   PetscFunctionBegin;
209566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vA));
219566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A,vA,idx));
224e879edeSHong Zhang 
239566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA,&va));
24985db425SBarry Smith   if (idx) {
254e879edeSHong Zhang     for (i=0; i<m; i++) {
2626fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2726fbe8dcSKarl Rupp     }
28985db425SBarry Smith   }
297843d17aSBarry Smith 
309566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF,m,&vB));
319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m,&idxb));
329566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B,vB,idxb));
337843d17aSBarry Smith 
349566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v,&vv));
359566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB,&vb));
364e879edeSHong Zhang   for (i=0; i<m; i++) {
3726fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
384e879edeSHong Zhang       vv[i] = vb[i];
394e879edeSHong Zhang       if (idx) idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs);
404e879edeSHong Zhang     } else {
414e879edeSHong Zhang       vv[i] = va[i];
4243359b5eSHong Zhang       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs*a->garray[idxb[i]/bs] + (idxb[i] % bs))
434e879edeSHong Zhang         idx[i] = bs*a->garray[idxb[i]/bs] + (idxb[i] % bs);
4426fbe8dcSKarl Rupp     }
457843d17aSBarry Smith   }
469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA,&vv));
479566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA,&va));
489566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB,&vb));
499566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
509566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
519566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
527843d17aSBarry Smith   PetscFunctionReturn(0);
537843d17aSBarry Smith }
547843d17aSBarry Smith 
557087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
567fc3c18eSBarry Smith {
577fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
587fc3c18eSBarry Smith 
597fc3c18eSBarry Smith   PetscFunctionBegin;
609566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
619566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
627fc3c18eSBarry Smith   PetscFunctionReturn(0);
637fc3c18eSBarry Smith }
647fc3c18eSBarry Smith 
657087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
667fc3c18eSBarry Smith {
677fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
687fc3c18eSBarry Smith 
697fc3c18eSBarry Smith   PetscFunctionBegin;
709566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
719566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
727fc3c18eSBarry Smith   PetscFunctionReturn(0);
737fc3c18eSBarry Smith }
747fc3c18eSBarry Smith 
75537820f0SBarry Smith /*
76537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7757b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
78e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7957b952d6SSatish Balay    length of colmap equals the global matrix length.
8057b952d6SSatish Balay */
81ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
8257b952d6SSatish Balay {
8357b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
8457b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
85d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8657b952d6SSatish Balay 
87d64ed03dSBarry Smith   PetscFunctionBegin;
88aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
899566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap));
9048e59246SSatish Balay   for (i=0; i<nbs; i++) {
919566063dSJacob Faibussowitsch     PetscCall(PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES));
9248e59246SSatish Balay   }
9348e59246SSatish Balay #else
949566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs+1,&baij->colmap));
959566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt)));
96928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9748e59246SSatish Balay #endif
983a40ed3dSBarry Smith   PetscFunctionReturn(0);
9957b952d6SSatish Balay }
10057b952d6SSatish Balay 
101d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol)       \
10280c1aa95SSatish Balay   { \
10380c1aa95SSatish Balay     brow = row/bs;  \
10480c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
105ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10680c1aa95SSatish Balay     bcol = col/bs; \
10780c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
108ab26458aSBarry Smith     low  = 0; high = nrow; \
109ab26458aSBarry Smith     while (high-low > 3) { \
110ab26458aSBarry Smith       t = (low+high)/2; \
111ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
112ab26458aSBarry Smith       else              low  = t; \
113ab26458aSBarry Smith     } \
114ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11580c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11680c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11780c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
118eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
119eada6651SSatish Balay         else                    *bap  = value;  \
120ac7a638eSSatish Balay         goto a_noinsert; \
12180c1aa95SSatish Balay       } \
12280c1aa95SSatish Balay     } \
12389280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1245f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
125fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12680c1aa95SSatish Balay     N = nrow++ - 1;  \
12780c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1289566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\
1299566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1))); \
1309566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2));  \
13180c1aa95SSatish Balay     rp[_i]                      = bcol;  \
13280c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
133ac7a638eSSatish Balay a_noinsert:; \
13480c1aa95SSatish Balay     ailen[brow] = nrow; \
13580c1aa95SSatish Balay   }
13657b952d6SSatish Balay 
137d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol)       \
138ac7a638eSSatish Balay   { \
139ac7a638eSSatish Balay     brow = row/bs;  \
140ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
141ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
142ac7a638eSSatish Balay     bcol = col/bs; \
143ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
144ac7a638eSSatish Balay     low  = 0; high = nrow; \
145ac7a638eSSatish Balay     while (high-low > 3) { \
146ac7a638eSSatish Balay       t = (low+high)/2; \
147ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
148ac7a638eSSatish Balay       else              low  = t; \
149ac7a638eSSatish Balay     } \
150ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
151ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
152ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
153ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
154ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
155ac7a638eSSatish Balay         else                    *bap  = value;  \
156ac7a638eSSatish Balay         goto b_noinsert; \
157ac7a638eSSatish Balay       } \
158ac7a638eSSatish Balay     } \
15989280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
1605f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
161fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
162ac7a638eSSatish Balay     N = nrow++ - 1;  \
163ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
1649566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp+_i+1,rp+_i,N-_i+1));\
1659566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap+bs2*(_i+1),ap+bs2*_i,bs2*(N-_i+1)));\
1669566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap+bs2*_i,bs2));  \
167ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
168ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
169ac7a638eSSatish Balay b_noinsert:; \
170ac7a638eSSatish Balay     bilen[brow] = nrow; \
171ac7a638eSSatish Balay   }
172ac7a638eSSatish Balay 
173b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
17457b952d6SSatish Balay {
17557b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
17693fea6afSBarry Smith   MatScalar      value;
177ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
178b24ad042SBarry Smith   PetscInt       i,j,row,col;
179d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
180d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
181d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
18257b952d6SSatish Balay 
183eada6651SSatish Balay   /* Some Variables required in the macro */
18480c1aa95SSatish Balay   Mat         A     = baij->A;
18580c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
186b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1873eda8832SBarry Smith   MatScalar   *aa   =a->a;
188ac7a638eSSatish Balay 
189ac7a638eSSatish Balay   Mat         B     = baij->B;
190ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
191b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
1923eda8832SBarry Smith   MatScalar   *ba   =b->a;
193ac7a638eSSatish Balay 
194b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
195b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
1963eda8832SBarry Smith   MatScalar *ap,*bap;
19780c1aa95SSatish Balay 
198d64ed03dSBarry Smith   PetscFunctionBegin;
19957b952d6SSatish Balay   for (i=0; i<m; i++) {
2005ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2015f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
20257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
20357b952d6SSatish Balay       row = im[i] - rstart_orig;
20457b952d6SSatish Balay       for (j=0; j<n; j++) {
20557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
20657b952d6SSatish Balay           col = in[j] - cstart_orig;
207db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
208db4deed7SKarl Rupp           else             value = v[i+j*m];
209d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
21073959e64SBarry Smith         } else if (in[j] < 0) continue;
2115f80ce2aSJacob Faibussowitsch         else PetscCheck(in[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],mat->cmap->N-1);
2129245e749SBarry Smith         else {
21357b952d6SSatish Balay           if (mat->was_assembled) {
214905e6a2fSBarry Smith             if (!baij->colmap) {
2159566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
216905e6a2fSBarry Smith             }
217aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2189566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]/bs + 1,&col));
219bba1ac68SSatish Balay             col  = col - 1;
22048e59246SSatish Balay #else
221bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
22248e59246SSatish Balay #endif
223c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
2249566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2258295de27SSatish Balay               col  =  in[j];
2269bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2279bf004c3SSatish Balay               B    = baij->B;
2289bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2299bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2309bf004c3SSatish Balay               ba   =b->a;
2315f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
232c9ef50b2SBarry Smith             else col += in[j]%bs;
2338295de27SSatish Balay           } else col = in[j];
234db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
235db4deed7SKarl Rupp           else             value = v[i+j*m];
236d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
2379566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
23857b952d6SSatish Balay         }
23957b952d6SSatish Balay       }
240d64ed03dSBarry Smith     } else {
2415f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
24290f02eecSBarry Smith       if (!baij->donotstash) {
2435080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
244ff2fd236SBarry Smith         if (roworiented) {
2459566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE));
246ff2fd236SBarry Smith         } else {
2479566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE));
24857b952d6SSatish Balay         }
24957b952d6SSatish Balay       }
25057b952d6SSatish Balay     }
25190f02eecSBarry Smith   }
2523a40ed3dSBarry Smith   PetscFunctionReturn(0);
25357b952d6SSatish Balay }
25457b952d6SSatish Balay 
2559fbee547SJacob Faibussowitsch static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
256880c6e6aSBarry Smith {
257880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
2588ab52850SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
259880c6e6aSBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
2608ab52850SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
261880c6e6aSBarry Smith   PetscBool         roworiented=a->roworiented;
262880c6e6aSBarry Smith   const PetscScalar *value     = v;
263880c6e6aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
264880c6e6aSBarry Smith 
265880c6e6aSBarry Smith   PetscFunctionBegin;
266880c6e6aSBarry Smith   rp   = aj + ai[row];
267880c6e6aSBarry Smith   ap   = aa + bs2*ai[row];
268880c6e6aSBarry Smith   rmax = imax[row];
269880c6e6aSBarry Smith   nrow = ailen[row];
2708ab52850SBarry Smith   value = v;
2718ab52850SBarry Smith   low = 0;
2728ab52850SBarry Smith   high = nrow;
273880c6e6aSBarry Smith   while (high-low > 7) {
274880c6e6aSBarry Smith     t = (low+high)/2;
275880c6e6aSBarry Smith     if (rp[t] > col) high = t;
276880c6e6aSBarry Smith     else             low  = t;
277880c6e6aSBarry Smith   }
278880c6e6aSBarry Smith   for (i=low; i<high; i++) {
279880c6e6aSBarry Smith     if (rp[i] > col) break;
280880c6e6aSBarry Smith     if (rp[i] == col) {
281880c6e6aSBarry Smith       bap = ap +  bs2*i;
282880c6e6aSBarry Smith       if (roworiented) {
283880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2848ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
285880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
286880c6e6aSBarry Smith               bap[jj] += *value++;
287880c6e6aSBarry Smith             }
288880c6e6aSBarry Smith           }
289880c6e6aSBarry Smith         } else {
2908ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
291880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
292880c6e6aSBarry Smith               bap[jj] = *value++;
293880c6e6aSBarry Smith             }
294880c6e6aSBarry Smith           }
295880c6e6aSBarry Smith         }
296880c6e6aSBarry Smith       } else {
297880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2988ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
299880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
300880c6e6aSBarry Smith               bap[jj] += value[jj];
301880c6e6aSBarry Smith             }
302880c6e6aSBarry Smith             bap += bs;
303880c6e6aSBarry Smith           }
304880c6e6aSBarry Smith         } else {
3058ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
306880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
307880c6e6aSBarry Smith               bap[jj]  = value[jj];
308880c6e6aSBarry Smith             }
309880c6e6aSBarry Smith             bap += bs;
310880c6e6aSBarry Smith           }
311880c6e6aSBarry Smith         }
312880c6e6aSBarry Smith       }
313880c6e6aSBarry Smith       goto noinsert2;
314880c6e6aSBarry Smith     }
315880c6e6aSBarry Smith   }
316880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3175f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
318880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
319880c6e6aSBarry Smith   N = nrow++ - 1; high++;
320880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3219566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp+i+1,rp+i,N-i+1));
3229566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap+bs2*(i+1),ap+bs2*i,bs2*(N-i+1)));
323880c6e6aSBarry Smith   rp[i] = col;
324880c6e6aSBarry Smith   bap   = ap +  bs2*i;
325880c6e6aSBarry Smith   if (roworiented) {
3268ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
327880c6e6aSBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
328880c6e6aSBarry Smith         bap[jj] = *value++;
329880c6e6aSBarry Smith       }
330880c6e6aSBarry Smith     }
331880c6e6aSBarry Smith   } else {
3328ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
333880c6e6aSBarry Smith       for (jj=0; jj<bs; jj++) {
334880c6e6aSBarry Smith         *bap++ = *value++;
335880c6e6aSBarry Smith       }
336880c6e6aSBarry Smith     }
337880c6e6aSBarry Smith   }
338880c6e6aSBarry Smith   noinsert2:;
339880c6e6aSBarry Smith   ailen[row] = nrow;
340880c6e6aSBarry Smith   PetscFunctionReturn(0);
341880c6e6aSBarry Smith }
342880c6e6aSBarry Smith 
3438ab52850SBarry Smith /*
3448ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3458ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3468ab52850SBarry Smith */
34797e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
348ab26458aSBarry Smith {
349ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
350dd6ea824SBarry Smith   const PetscScalar *value;
351f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
352ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
353899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
354899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
355d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
356ab26458aSBarry Smith 
357b16ae2b1SBarry Smith   PetscFunctionBegin;
35830793edcSSatish Balay   if (!barray) {
3599566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2,&barray));
36082502324SSatish Balay     baij->barray = barray;
36130793edcSSatish Balay   }
36230793edcSSatish Balay 
36326fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
36426fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
36526fbe8dcSKarl Rupp 
366ab26458aSBarry Smith   for (i=0; i<m; i++) {
3675ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3686bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
369ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
370ab26458aSBarry Smith       row = im[i] - rstart;
371ab26458aSBarry Smith       for (j=0; j<n; j++) {
37215b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
37315b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
374f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
37515b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
376f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
37715b57d14SSatish Balay         } else { /* Here a copy is required */
378ab26458aSBarry Smith           if (roworiented) {
37953ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
380ab26458aSBarry Smith           } else {
38153ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
382abef11f7SSatish Balay           }
38353ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
38426fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
38553ef36baSBarry Smith             barray += bs;
38647513183SBarry Smith           }
38730793edcSSatish Balay           barray -= bs2;
38815b57d14SSatish Balay         }
389abef11f7SSatish Balay 
390abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
391abef11f7SSatish Balay           col  = in[j] - cstart;
3929566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]));
39326fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
3946bdcaf15SBarry Smith         else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1);
3959245e749SBarry Smith         else {
396ab26458aSBarry Smith           if (mat->was_assembled) {
397ab26458aSBarry Smith             if (!baij->colmap) {
3989566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
399ab26458aSBarry Smith             }
400a5eb4965SSatish Balay 
4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
402aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
403b24ad042SBarry Smith             { PetscInt data;
4049566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data));
40508401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
406fa46199cSSatish Balay             }
40748e59246SSatish Balay #else
40808401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
409a5eb4965SSatish Balay #endif
41048e59246SSatish Balay #endif
411aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4129566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col));
413fa46199cSSatish Balay             col  = (col - 1)/bs;
41448e59246SSatish Balay #else
415a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
41648e59246SSatish Balay #endif
4170e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
4189566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
419ab26458aSBarry Smith               col  =  in[j];
4205f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix",im[i],in[j]);
421db4deed7SKarl Rupp           } else col = in[j];
4229566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]));
423ab26458aSBarry Smith         }
424ab26458aSBarry Smith       }
425d64ed03dSBarry Smith     } else {
4265f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
427ab26458aSBarry Smith       if (!baij->donotstash) {
428ff2fd236SBarry Smith         if (roworiented) {
4299566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
430ff2fd236SBarry Smith         } else {
4319566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
432ff2fd236SBarry Smith         }
433abef11f7SSatish Balay       }
434ab26458aSBarry Smith     }
435ab26458aSBarry Smith   }
4363a40ed3dSBarry Smith   PetscFunctionReturn(0);
437ab26458aSBarry Smith }
4386fa18ffdSBarry Smith 
4390bdbc534SSatish Balay #define HASH_KEY 0.6180339887
440b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
441b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
442b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
44397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4440bdbc534SSatish Balay {
4450bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
446ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
447b24ad042SBarry Smith   PetscInt       i,j,row,col;
448d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
449d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
450d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
451329f5518SBarry Smith   PetscReal      tmp;
4523eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
453b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4540bdbc534SSatish Balay 
4550bdbc534SSatish Balay   PetscFunctionBegin;
4560bdbc534SSatish Balay   for (i=0; i<m; i++) {
45776bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
4585f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
4595f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],mat->rmap->N-1);
46076bd3646SJed Brown     }
4610bdbc534SSatish Balay     row = im[i];
462c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4630bdbc534SSatish Balay       for (j=0; j<n; j++) {
4640bdbc534SSatish Balay         col = in[j];
465db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
466db4deed7SKarl Rupp         else             value = v[i+j*m];
467b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
468c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
469c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4700bdbc534SSatish Balay 
471c2760754SSatish Balay         idx = h1;
47276bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
473187ce0cbSSatish Balay           insert_ct++;
474187ce0cbSSatish Balay           total_ct++;
475187ce0cbSSatish Balay           if (HT[idx] != key) {
476187ce0cbSSatish Balay             for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
477187ce0cbSSatish Balay             if (idx == size) {
478187ce0cbSSatish Balay               for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
4795f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
480187ce0cbSSatish Balay             }
481187ce0cbSSatish Balay           }
48276bd3646SJed Brown         } else if (HT[idx] != key) {
483c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
484c2760754SSatish Balay           if (idx == size) {
485c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
4865f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
487c2760754SSatish Balay           }
488c2760754SSatish Balay         }
489c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
490c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
491c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4920bdbc534SSatish Balay       }
49326fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
494ff2fd236SBarry Smith       if (roworiented) {
4959566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE));
496ff2fd236SBarry Smith       } else {
4979566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE));
4980bdbc534SSatish Balay       }
4990bdbc534SSatish Balay     }
5000bdbc534SSatish Balay   }
50176bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
502abf3b562SBarry Smith     baij->ht_total_ct  += total_ct;
503abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
50476bd3646SJed Brown   }
5050bdbc534SSatish Balay   PetscFunctionReturn(0);
5060bdbc534SSatish Balay }
5070bdbc534SSatish Balay 
50897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
5090bdbc534SSatish Balay {
5100bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
511ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
512b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
513899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
514d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
515b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
516329f5518SBarry Smith   PetscReal         tmp;
5173eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
518dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
519b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5200bdbc534SSatish Balay 
521d0a41580SSatish Balay   PetscFunctionBegin;
52226fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
52326fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
52426fbe8dcSKarl Rupp 
5250bdbc534SSatish Balay   for (i=0; i<m; i++) {
52676bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5275f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %" PetscInt_FMT,im[i]);
5285f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
52976bd3646SJed Brown     }
5300bdbc534SSatish Balay     row = im[i];
531ab715e2cSSatish Balay     v_t = v + i*nbs2;
532c2760754SSatish Balay     if (row >= rstart && row < rend) {
5330bdbc534SSatish Balay       for (j=0; j<n; j++) {
5340bdbc534SSatish Balay         col = in[j];
5350bdbc534SSatish Balay 
5360bdbc534SSatish Balay         /* Look up into the Hash Table */
537c2760754SSatish Balay         key = row*Nbs+col+1;
538c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5390bdbc534SSatish Balay 
540c2760754SSatish Balay         idx = h1;
54176bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
542187ce0cbSSatish Balay           total_ct++;
543187ce0cbSSatish Balay           insert_ct++;
544187ce0cbSSatish Balay           if (HT[idx] != key) {
545187ce0cbSSatish Balay             for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
546187ce0cbSSatish Balay             if (idx == size) {
547187ce0cbSSatish Balay               for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
5485f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
549187ce0cbSSatish Balay             }
550187ce0cbSSatish Balay           }
55176bd3646SJed Brown         } else if (HT[idx] != key) {
552c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
553c2760754SSatish Balay           if (idx == size) {
554c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
5555f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
556c2760754SSatish Balay           }
557c2760754SSatish Balay         }
558c2760754SSatish Balay         baij_a = HD[idx];
5590bdbc534SSatish Balay         if (roworiented) {
560c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
561187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
562187ce0cbSSatish Balay           value = v_t;
563187ce0cbSSatish Balay           v_t  += bs;
564fef45726SSatish Balay           if (addv == ADD_VALUES) {
565c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
566c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
567fef45726SSatish Balay                 baij_a[jj] += *value++;
568b4cc0f5aSSatish Balay               }
569b4cc0f5aSSatish Balay             }
570fef45726SSatish Balay           } else {
571c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
572c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
573fef45726SSatish Balay                 baij_a[jj] = *value++;
574fef45726SSatish Balay               }
575fef45726SSatish Balay             }
576fef45726SSatish Balay           }
5770bdbc534SSatish Balay         } else {
5780bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
579fef45726SSatish Balay           if (addv == ADD_VALUES) {
580b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5810bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
582fef45726SSatish Balay                 baij_a[jj] += *value++;
583fef45726SSatish Balay               }
584fef45726SSatish Balay             }
585fef45726SSatish Balay           } else {
586fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
587fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
588fef45726SSatish Balay                 baij_a[jj] = *value++;
589fef45726SSatish Balay               }
590b4cc0f5aSSatish Balay             }
5910bdbc534SSatish Balay           }
5920bdbc534SSatish Balay         }
5930bdbc534SSatish Balay       }
5940bdbc534SSatish Balay     } else {
5950bdbc534SSatish Balay       if (!baij->donotstash) {
5960bdbc534SSatish Balay         if (roworiented) {
5979566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
5980bdbc534SSatish Balay         } else {
5999566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
6000bdbc534SSatish Balay         }
6010bdbc534SSatish Balay       }
6020bdbc534SSatish Balay     }
6030bdbc534SSatish Balay   }
60476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
605abf3b562SBarry Smith     baij->ht_total_ct  += total_ct;
606abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
60776bd3646SJed Brown   }
6080bdbc534SSatish Balay   PetscFunctionReturn(0);
6090bdbc534SSatish Balay }
610133cdb44SSatish Balay 
611b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
612d6de1c52SSatish Balay {
613d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
614d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
615d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
616d6de1c52SSatish Balay 
617133cdb44SSatish Balay   PetscFunctionBegin;
618d6de1c52SSatish Balay   for (i=0; i<m; i++) {
61954c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
62054c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT,idxm[i],mat->rmap->N-1);
621d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
622d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
623d6de1c52SSatish Balay       for (j=0; j<n; j++) {
62454c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
62554c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT,idxn[j],mat->cmap->N-1);
626d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
627d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
6289566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j));
629d64ed03dSBarry Smith         } else {
630905e6a2fSBarry Smith           if (!baij->colmap) {
6319566063dSJacob Faibussowitsch             PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
632905e6a2fSBarry Smith           }
633aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6349566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(baij->colmap,idxn[j]/bs+1,&data));
635fa46199cSSatish Balay           data--;
63648e59246SSatish Balay #else
63748e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
63848e59246SSatish Balay #endif
63948e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
640d9d09a02SSatish Balay           else {
64148e59246SSatish Balay             col  = data + idxn[j]%bs;
6429566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j));
643d6de1c52SSatish Balay           }
644d6de1c52SSatish Balay         }
645d6de1c52SSatish Balay       }
646f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
647d6de1c52SSatish Balay   }
6483a40ed3dSBarry Smith   PetscFunctionReturn(0);
649d6de1c52SSatish Balay }
650d6de1c52SSatish Balay 
651dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
652d6de1c52SSatish Balay {
653d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
654d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
655d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
656329f5518SBarry Smith   PetscReal      sum = 0.0;
6573eda8832SBarry Smith   MatScalar      *v;
658d6de1c52SSatish Balay 
659d64ed03dSBarry Smith   PetscFunctionBegin;
660d6de1c52SSatish Balay   if (baij->size == 1) {
6619566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A,type,nrm));
662d6de1c52SSatish Balay   } else {
663d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
664d6de1c52SSatish Balay       v  = amat->a;
6658a62d963SHong Zhang       nz = amat->nz*bs2;
6668a62d963SHong Zhang       for (i=0; i<nz; i++) {
667329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
668d6de1c52SSatish Balay       }
669d6de1c52SSatish Balay       v  = bmat->a;
6708a62d963SHong Zhang       nz = bmat->nz*bs2;
6718a62d963SHong Zhang       for (i=0; i<nz; i++) {
672329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
673d6de1c52SSatish Balay       }
6741c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
6758f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6768a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6778a62d963SHong Zhang       PetscReal *tmp,*tmp2;
678899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
6799566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N,&tmp));
6809566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N,&tmp2));
6818a62d963SHong Zhang       v    = amat->a; jj = amat->j;
6828a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6838a62d963SHong Zhang         for (j=0; j<bs; j++) {
6848a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6858a62d963SHong Zhang           for (row=0; row<bs; row++) {
6868a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6878a62d963SHong Zhang           }
6888a62d963SHong Zhang         }
6898a62d963SHong Zhang         jj++;
6908a62d963SHong Zhang       }
6918a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6928a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6938a62d963SHong Zhang         for (j=0; j<bs; j++) {
6948a62d963SHong Zhang           col = bs*garray[*jj] + j;
6958a62d963SHong Zhang           for (row=0; row<bs; row++) {
6968a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6978a62d963SHong Zhang           }
6988a62d963SHong Zhang         }
6998a62d963SHong Zhang         jj++;
7008a62d963SHong Zhang       }
7011c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat)));
7028a62d963SHong Zhang       *nrm = 0.0;
703d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
7048a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7058a62d963SHong Zhang       }
7069566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
7079566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
7088a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
709577dd1f9SKris Buschelman       PetscReal *sums;
7109566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs,&sums));
7118a62d963SHong Zhang       sum  = 0.0;
7128a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
7138a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
7148a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
7158a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
7168a62d963SHong Zhang         for (i=0; i<nz; i++) {
7178a62d963SHong Zhang           for (col=0; col<bs; col++) {
7188a62d963SHong Zhang             for (row=0; row<bs; row++) {
7198a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7208a62d963SHong Zhang             }
7218a62d963SHong Zhang           }
7228a62d963SHong Zhang         }
7238a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
7248a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7258a62d963SHong Zhang         for (i=0; i<nz; i++) {
7268a62d963SHong Zhang           for (col=0; col<bs; col++) {
7278a62d963SHong Zhang             for (row=0; row<bs; row++) {
7288a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7298a62d963SHong Zhang             }
7308a62d963SHong Zhang           }
7318a62d963SHong Zhang         }
7328a62d963SHong Zhang         for (row=0; row<bs; row++) {
7338a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7348a62d963SHong Zhang         }
7358a62d963SHong Zhang       }
7361c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat)));
7379566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
738ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
739d64ed03dSBarry Smith   }
7403a40ed3dSBarry Smith   PetscFunctionReturn(0);
741d6de1c52SSatish Balay }
74257b952d6SSatish Balay 
743fef45726SSatish Balay /*
744fef45726SSatish Balay   Creates the hash table, and sets the table
745fef45726SSatish Balay   This table is created only once.
746fef45726SSatish Balay   If new entried need to be added to the matrix
747fef45726SSatish Balay   then the hash table has to be destroyed and
748fef45726SSatish Balay   recreated.
749fef45726SSatish Balay */
750dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
751596b8d2eSBarry Smith {
752596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
753596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
754596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
755b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
756fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
757899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
758b24ad042SBarry Smith   PetscInt       *HT,key;
7593eda8832SBarry Smith   MatScalar      **HD;
760329f5518SBarry Smith   PetscReal      tmp;
7616cf91177SBarry Smith #if defined(PETSC_USE_INFO)
762b24ad042SBarry Smith   PetscInt ct=0,max=0;
7634a15367fSSatish Balay #endif
764fef45726SSatish Balay 
765d64ed03dSBarry Smith   PetscFunctionBegin;
766fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
767fef45726SSatish Balay 
768fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
769fca92195SBarry Smith   ht_size       = baij->ht_size;
7700bdbc534SSatish Balay 
771fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7729566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht));
773b9e4cc15SSatish Balay   HD   = baij->hd;
774a07cd24cSSatish Balay   HT   = baij->ht;
775b9e4cc15SSatish Balay 
776596b8d2eSBarry Smith   /* Loop Over A */
7770bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
778596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7790bdbc534SSatish Balay       row = i+rstart;
7800bdbc534SSatish Balay       col = aj[j]+cstart;
781596b8d2eSBarry Smith 
782187ce0cbSSatish Balay       key = row*Nbs + col + 1;
783fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
784fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
785fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
786fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
787fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
788596b8d2eSBarry Smith           break;
7896cf91177SBarry Smith #if defined(PETSC_USE_INFO)
790187ce0cbSSatish Balay         } else {
791187ce0cbSSatish Balay           ct++;
792187ce0cbSSatish Balay #endif
793596b8d2eSBarry Smith         }
794187ce0cbSSatish Balay       }
7956cf91177SBarry Smith #if defined(PETSC_USE_INFO)
796187ce0cbSSatish Balay       if (k> max) max = k;
797187ce0cbSSatish Balay #endif
798596b8d2eSBarry Smith     }
799596b8d2eSBarry Smith   }
800596b8d2eSBarry Smith   /* Loop Over B */
8010bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
802596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
8030bdbc534SSatish Balay       row = i+rstart;
8040bdbc534SSatish Balay       col = garray[bj[j]];
805187ce0cbSSatish Balay       key = row*Nbs + col + 1;
806fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
807fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
808fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
809fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
810fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
811596b8d2eSBarry Smith           break;
8126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
813187ce0cbSSatish Balay         } else {
814187ce0cbSSatish Balay           ct++;
815187ce0cbSSatish Balay #endif
816596b8d2eSBarry Smith         }
817187ce0cbSSatish Balay       }
8186cf91177SBarry Smith #if defined(PETSC_USE_INFO)
819187ce0cbSSatish Balay       if (k> max) max = k;
820187ce0cbSSatish Balay #endif
821596b8d2eSBarry Smith     }
822596b8d2eSBarry Smith   }
823596b8d2eSBarry Smith 
824596b8d2eSBarry Smith   /* Print Summary */
8256cf91177SBarry Smith #if defined(PETSC_USE_INFO)
826fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
82726fbe8dcSKarl Rupp     if (HT[i]) j++;
828c38d4ed2SBarry Smith   }
8299566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Average Search = %5.2g,max search = %" PetscInt_FMT "\n",(!j) ? (double)0.0:(double)(((PetscReal)(ct+j))/(double)j),max));
830187ce0cbSSatish Balay #endif
8313a40ed3dSBarry Smith   PetscFunctionReturn(0);
832596b8d2eSBarry Smith }
83357b952d6SSatish Balay 
834dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
835bbb85fb3SSatish Balay {
836bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
837b24ad042SBarry Smith   PetscInt       nstash,reallocs;
838bbb85fb3SSatish Balay 
839bbb85fb3SSatish Balay   PetscFunctionBegin;
84026fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
841bbb85fb3SSatish Balay 
8429566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range));
8439566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs));
8449566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs));
8459566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
8469566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs));
8479566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat,"Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n",nstash,reallocs));
848bbb85fb3SSatish Balay   PetscFunctionReturn(0);
849bbb85fb3SSatish Balay }
850bbb85fb3SSatish Balay 
851dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
852bbb85fb3SSatish Balay {
853bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
85491c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
855b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
856e44c0bd4SBarry Smith   PetscInt       *row,*col;
857ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
8583eda8832SBarry Smith   MatScalar      *val;
859b24ad042SBarry Smith   PetscMPIInt    n;
860bbb85fb3SSatish Balay 
861bbb85fb3SSatish Balay   PetscFunctionBegin;
8625fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8634cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
864a2d1c673SSatish Balay     while (1) {
8659566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg));
866a2d1c673SSatish Balay       if (!flg) break;
867a2d1c673SSatish Balay 
868bbb85fb3SSatish Balay       for (i=0; i<n;) {
869bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
87026fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
87126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
87226fbe8dcSKarl Rupp         }
873bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
874bbb85fb3SSatish Balay         else       ncols = n-i;
875bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
8769566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode));
877bbb85fb3SSatish Balay         i    = j;
878bbb85fb3SSatish Balay       }
879bbb85fb3SSatish Balay     }
8809566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
881a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
882a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
883a2d1c673SSatish Balay        restore the original flags */
884a2d1c673SSatish Balay     r1 = baij->roworiented;
885a2d1c673SSatish Balay     r2 = a->roworiented;
88691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
88726fbe8dcSKarl Rupp 
8887c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8897c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89026fbe8dcSKarl Rupp 
89191c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
892a2d1c673SSatish Balay     while (1) {
8939566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg));
894a2d1c673SSatish Balay       if (!flg) break;
895a2d1c673SSatish Balay 
896a2d1c673SSatish Balay       for (i=0; i<n;) {
897a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
89826fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
89926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
90026fbe8dcSKarl Rupp         }
901a2d1c673SSatish Balay         if (j < n) ncols = j-i;
902a2d1c673SSatish Balay         else       ncols = n-i;
9039566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode));
904a2d1c673SSatish Balay         i    = j;
905a2d1c673SSatish Balay       }
906a2d1c673SSatish Balay     }
9079566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
90826fbe8dcSKarl Rupp 
909a2d1c673SSatish Balay     baij->roworiented = r1;
910a2d1c673SSatish Balay     a->roworiented    = r2;
91126fbe8dcSKarl Rupp 
91291c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
913bbb85fb3SSatish Balay   }
914bbb85fb3SSatish Balay 
9159566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A,mode));
9169566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A,mode));
917bbb85fb3SSatish Balay 
918bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9196aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
920bbb85fb3SSatish Balay   /*
921bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
922bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
923bbb85fb3SSatish Balay   */
924bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
9251c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat)));
926bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
9279566063dSJacob Faibussowitsch       PetscCall(MatDisAssemble_MPIBAIJ(mat));
928bbb85fb3SSatish Balay     }
929bbb85fb3SSatish Balay   }
930bbb85fb3SSatish Balay 
931bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
9329566063dSJacob Faibussowitsch     PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
933bbb85fb3SSatish Balay   }
9349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B,mode));
9359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B,mode));
936bbb85fb3SSatish Balay 
9376cf91177SBarry Smith #if defined(PETSC_USE_INFO)
938bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9399566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",(double)((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct));
94026fbe8dcSKarl Rupp 
941bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
942bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
943bbb85fb3SSatish Balay   }
944bbb85fb3SSatish Balay #endif
945bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9469566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact));
94726fbe8dcSKarl Rupp 
948bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
949bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
950bbb85fb3SSatish Balay   }
951bbb85fb3SSatish Balay 
9529566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
95326fbe8dcSKarl Rupp 
954f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9554f9cfa9eSBarry Smith 
9564f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9574f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
958e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
9591c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat)));
960e56f5c9eSBarry Smith   }
961bbb85fb3SSatish Balay   PetscFunctionReturn(0);
962bbb85fb3SSatish Balay }
96357b952d6SSatish Balay 
9647da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
9659804daf3SBarry Smith #include <petscdraw.h>
9666849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
96757b952d6SSatish Balay {
96857b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
9697da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
970d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
971ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
972b0a32e0cSBarry Smith   PetscViewer       sviewer;
973f3ef73ceSBarry Smith   PetscViewerFormat format;
97457b952d6SSatish Balay 
975d64ed03dSBarry Smith   PetscFunctionBegin;
9769566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
9779566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
97832077d6dSBarry Smith   if (iascii) {
9799566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer,&format));
980456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9814e220ebcSLois Curfman McInnes       MatInfo info;
9829566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank));
9839566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat,MAT_LOCAL,&info));
9849566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9859566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n",
9865f80ce2aSJacob Faibussowitsch                                                  rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(double)info.memory));
9879566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A,MAT_LOCAL,&info));
9889566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
9899566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B,MAT_LOCAL,&info));
9909566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %" PetscInt_FMT " \n",rank,(PetscInt)info.nz_used));
9919566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9929566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9939566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n"));
9949566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx,viewer));
9953a40ed3dSBarry Smith       PetscFunctionReturn(0);
996fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9979566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer,"  block size is %" PetscInt_FMT "\n",bs));
9983a40ed3dSBarry Smith       PetscFunctionReturn(0);
99904929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
100004929863SHong Zhang       PetscFunctionReturn(0);
100157b952d6SSatish Balay     }
100257b952d6SSatish Balay   }
100357b952d6SSatish Balay 
10040f5bd95cSBarry Smith   if (isdraw) {
1005b0a32e0cSBarry Smith     PetscDraw draw;
1006ace3abfcSBarry Smith     PetscBool isnull;
10079566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer,0,&draw));
10089566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw,&isnull));
100945f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
101057b952d6SSatish Balay   }
101157b952d6SSatish Balay 
10127da1fb6eSBarry Smith   {
101357b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
101457b952d6SSatish Balay     Mat         A;
101557b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1016d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10173eda8832SBarry Smith     MatScalar   *a;
10183e219373SBarry Smith     const char  *matname;
101957b952d6SSatish Balay 
1020f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1021f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10229566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat),&A));
1023dd400576SPatrick Sanan     if (rank == 0) {
10249566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,M,N,M,N));
1025d64ed03dSBarry Smith     } else {
10269566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A,0,0,M,N));
102757b952d6SSatish Balay     }
10289566063dSJacob Faibussowitsch     PetscCall(MatSetType(A,MATMPIBAIJ));
10299566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL));
10309566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE));
10319566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)A));
103257b952d6SSatish Balay 
103357b952d6SSatish Balay     /* copy over the A part */
103457b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
103557b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
10369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs,&rvals));
103757b952d6SSatish Balay 
103857b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1039899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104026fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
104157b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1042899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
104357b952d6SSatish Balay         for (k=0; k<bs; k++) {
10449566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
1045cee3aa6bSSatish Balay           col++; a += bs;
104657b952d6SSatish Balay         }
104757b952d6SSatish Balay       }
104857b952d6SSatish Balay     }
104957b952d6SSatish Balay     /* copy over the B part */
105057b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
105157b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
105257b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1053899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
105426fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
105557b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
105657b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
105757b952d6SSatish Balay         for (k=0; k<bs; k++) {
10589566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES));
1059cee3aa6bSSatish Balay           col++; a += bs;
106057b952d6SSatish Balay         }
106157b952d6SSatish Balay       }
106257b952d6SSatish Balay     }
10639566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
10649566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
10659566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
106655843e3eSBarry Smith     /*
106755843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1068b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
106955843e3eSBarry Smith     */
10709566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
10719566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)mat,&matname));
1072dd400576SPatrick Sanan     if (rank == 0) {
10739566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname));
10749566063dSJacob Faibussowitsch       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer));
107557b952d6SSatish Balay     }
10769566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer));
10779566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
10789566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
107957b952d6SSatish Balay   }
10803a40ed3dSBarry Smith   PetscFunctionReturn(0);
108157b952d6SSatish Balay }
108257b952d6SSatish Balay 
1083618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
1084b51a4376SLisandro Dalcin PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1085660746e0SBarry Smith {
1086b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
1087b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A   = (Mat_SeqBAIJ*)aij->A->data;
1088b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B   = (Mat_SeqBAIJ*)aij->B->data;
1089b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
1090b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,m,rs,cs,bs,nz,cnt,i,j,ja,jb,k,l;
1091b51a4376SLisandro Dalcin   PetscInt       *rowlens,*colidxs;
1092b51a4376SLisandro Dalcin   PetscScalar    *matvals;
1093660746e0SBarry Smith 
1094660746e0SBarry Smith   PetscFunctionBegin;
10959566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1096b51a4376SLisandro Dalcin 
1097b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1098b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1099b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1100b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1101b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1102b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1103b51a4376SLisandro Dalcin   nz = bs*bs*(A->nz + B->nz);
1104b51a4376SLisandro Dalcin 
1105b51a4376SLisandro Dalcin   /* write matrix header */
1106660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
1107b51a4376SLisandro Dalcin   header[1] = M; header[2] = N; header[3] = nz;
11089566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat)));
11099566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer,header,4,PETSC_INT));
1110660746e0SBarry Smith 
1111b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11129566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m,&rowlens));
1113b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++)
1114b51a4376SLisandro Dalcin     for (j=0; j<bs; j++)
1115b51a4376SLisandro Dalcin       rowlens[cnt++] = bs*(A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]);
11169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer,rowlens,m,rs,M,PETSC_INT));
11179566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1118660746e0SBarry Smith 
1119b51a4376SLisandro Dalcin   /* fill in and store column indices */
11209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&colidxs));
1121b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1122b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1123b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1124b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1125b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1126b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1127660746e0SBarry Smith       }
1128b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1129b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1130b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*A->j[ja] + l + cs;
1131b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1132b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1133b51a4376SLisandro Dalcin           colidxs[cnt++] = bs*garray[B->j[jb]] + l;
1134660746e0SBarry Smith     }
1135660746e0SBarry Smith   }
11365f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz,PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT,cnt,nz);
11379566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer,colidxs,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_INT));
11389566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1139660746e0SBarry Smith 
1140b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11419566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz,&matvals));
1142b51a4376SLisandro Dalcin   for (cnt=0, i=0; i<A->mbs; i++) {
1143b51a4376SLisandro Dalcin     for (k=0; k<bs; k++) {
1144b51a4376SLisandro Dalcin       for (jb=B->i[i]; jb<B->i[i+1]; jb++) {
1145b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs/bs) break;
1146b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1147b51a4376SLisandro Dalcin           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1148660746e0SBarry Smith       }
1149b51a4376SLisandro Dalcin       for (ja=A->i[i]; ja<A->i[i+1]; ja++)
1150b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1151b51a4376SLisandro Dalcin           matvals[cnt++] = A->a[bs*(bs*ja + l) + k];
1152b51a4376SLisandro Dalcin       for (; jb<B->i[i+1]; jb++)
1153b51a4376SLisandro Dalcin         for (l=0; l<bs; l++)
1154d21b9a37SPierre Jolivet           matvals[cnt++] = B->a[bs*(bs*jb + l) + k];
1155660746e0SBarry Smith     }
1156b51a4376SLisandro Dalcin   }
11579566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer,matvals,nz,PETSC_DECIDE,PETSC_DECIDE,PETSC_SCALAR));
11589566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1159660746e0SBarry Smith 
1160b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
11619566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat,viewer));
1162660746e0SBarry Smith   PetscFunctionReturn(0);
1163660746e0SBarry Smith }
1164660746e0SBarry Smith 
1165dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
116657b952d6SSatish Balay {
1167ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
116857b952d6SSatish Balay 
1169d64ed03dSBarry Smith   PetscFunctionBegin;
11709566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii));
11719566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw));
11729566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket));
11739566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
1174660746e0SBarry Smith   if (iascii || isdraw || issocket) {
11759566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer));
1176660746e0SBarry Smith   } else if (isbinary) {
11779566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_Binary(mat,viewer));
117857b952d6SSatish Balay   }
11793a40ed3dSBarry Smith   PetscFunctionReturn(0);
118057b952d6SSatish Balay }
118157b952d6SSatish Balay 
1182dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
118379bdfe76SSatish Balay {
118479bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
118579bdfe76SSatish Balay 
1186d64ed03dSBarry Smith   PetscFunctionBegin;
1187aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1188c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat,"Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT,mat->rmap->N,mat->cmap->N);
118979bdfe76SSatish Balay #endif
11909566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
11919566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->bstash));
11929566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->A));
11939566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->B));
1194aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
11959566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&baij->colmap));
119648e59246SSatish Balay #else
11979566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->colmap));
119848e59246SSatish Balay #endif
11999566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->garray));
12009566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->lvec));
12019566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->Mvctx));
12029566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues,baij->rowindices));
12039566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->barray));
12049566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->hd,baij->ht));
12059566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->rangebs));
12069566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1207901853e0SKris Buschelman 
12089566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat,NULL));
12099566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL));
12109566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL));
12119566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL));
12129566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL));
12139566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL));
12149566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL));
12159566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL));
1216*2e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiadj_C",NULL));
1217*2e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpiaij_C",NULL));
12187ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
12199566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_hypre_C",NULL));
12207ea3e4caSstefano_zampini #endif
12219566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_is_C",NULL));
12223a40ed3dSBarry Smith   PetscFunctionReturn(0);
122379bdfe76SSatish Balay }
122479bdfe76SSatish Balay 
1225dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1226cee3aa6bSSatish Balay {
1227cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1228b24ad042SBarry Smith   PetscInt       nt;
1229cee3aa6bSSatish Balay 
1230d64ed03dSBarry Smith   PetscFunctionBegin;
12319566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx,&nt));
12325f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
12339566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy,&nt));
12345f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->rmap->n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
12359566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12369566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A,xx,yy));
12379566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12389566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->lvec,yy,yy));
12393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1240cee3aa6bSSatish Balay }
1241cee3aa6bSSatish Balay 
1242dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1243cee3aa6bSSatish Balay {
1244cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1245d64ed03dSBarry Smith 
1246d64ed03dSBarry Smith   PetscFunctionBegin;
12479566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12489566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A,xx,yy,zz));
12499566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD));
12509566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B,a->lvec,zz,zz));
12513a40ed3dSBarry Smith   PetscFunctionReturn(0);
1252cee3aa6bSSatish Balay }
1253cee3aa6bSSatish Balay 
1254dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1255cee3aa6bSSatish Balay {
1256cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1257cee3aa6bSSatish Balay 
1258d64ed03dSBarry Smith   PetscFunctionBegin;
1259cee3aa6bSSatish Balay   /* do nondiagonal part */
12609566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec));
1261cee3aa6bSSatish Balay   /* do local part */
12629566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A,xx,yy));
1263e4a140f6SJunchao Zhang   /* add partial results together */
12649566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE));
12659566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE));
12663a40ed3dSBarry Smith   PetscFunctionReturn(0);
1267cee3aa6bSSatish Balay }
1268cee3aa6bSSatish Balay 
1269dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1270cee3aa6bSSatish Balay {
1271cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1272cee3aa6bSSatish Balay 
1273d64ed03dSBarry Smith   PetscFunctionBegin;
1274cee3aa6bSSatish Balay   /* do nondiagonal part */
12759566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B,xx,a->lvec));
1276cee3aa6bSSatish Balay   /* do local part */
12779566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A,xx,yy,zz));
1278e4a140f6SJunchao Zhang   /* add partial results together */
12799566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE));
12809566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE));
12813a40ed3dSBarry Smith   PetscFunctionReturn(0);
1282cee3aa6bSSatish Balay }
1283cee3aa6bSSatish Balay 
1284cee3aa6bSSatish Balay /*
1285cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1286cee3aa6bSSatish Balay    diagonal block
1287cee3aa6bSSatish Balay */
1288dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1289cee3aa6bSSatish Balay {
1290d64ed03dSBarry Smith   PetscFunctionBegin;
12915f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N,PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12929566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ*)A->data)->A,v));
12933a40ed3dSBarry Smith   PetscFunctionReturn(0);
1294cee3aa6bSSatish Balay }
1295cee3aa6bSSatish Balay 
1296f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1297cee3aa6bSSatish Balay {
1298cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1299d64ed03dSBarry Smith 
1300d64ed03dSBarry Smith   PetscFunctionBegin;
13019566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A,aa));
13029566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B,aa));
13033a40ed3dSBarry Smith   PetscFunctionReturn(0);
1304cee3aa6bSSatish Balay }
1305026e39d0SSatish Balay 
1306b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1307acdf5bf4SSatish Balay {
1308acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data;
130987828ca2SBarry Smith   PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p;
1310d0f46423SBarry Smith   PetscInt    bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1311d0f46423SBarry Smith   PetscInt    nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1312899cda47SBarry Smith   PetscInt    *cmap,*idx_p,cstart = mat->cstartbs;
1313acdf5bf4SSatish Balay 
1314d64ed03dSBarry Smith   PetscFunctionBegin;
13155f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
13165f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1317acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1318acdf5bf4SSatish Balay 
1319acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1320acdf5bf4SSatish Balay     /*
1321acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1322acdf5bf4SSatish Balay     */
1323acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1324b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1325bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1326acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
132726fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1328acdf5bf4SSatish Balay     }
13299566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices));
1330acdf5bf4SSatish Balay   }
1331d9d09a02SSatish Balay   lrow = row - brstart;
1332acdf5bf4SSatish Balay 
1333acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1334f4259b30SLisandro Dalcin   if (!v)   {pvA = NULL; pvB = NULL;}
1335f4259b30SLisandro Dalcin   if (!idx) {pcA = NULL; if (!v) pcB = NULL;}
13369566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA));
13379566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB));
1338acdf5bf4SSatish Balay   nztot = nzA + nzB;
1339acdf5bf4SSatish Balay 
1340acdf5bf4SSatish Balay   cmap = mat->garray;
1341acdf5bf4SSatish Balay   if (v  || idx) {
1342acdf5bf4SSatish Balay     if (nztot) {
1343acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1344b24ad042SBarry Smith       PetscInt imark = -1;
1345acdf5bf4SSatish Balay       if (v) {
1346acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1347acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1348d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1349acdf5bf4SSatish Balay           else break;
1350acdf5bf4SSatish Balay         }
1351acdf5bf4SSatish Balay         imark = i;
1352acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1353acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1354acdf5bf4SSatish Balay       }
1355acdf5bf4SSatish Balay       if (idx) {
1356acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1357acdf5bf4SSatish Balay         if (imark > -1) {
1358acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1359bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1360acdf5bf4SSatish Balay           }
1361acdf5bf4SSatish Balay         } else {
1362acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
136326fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1364acdf5bf4SSatish Balay             else break;
1365acdf5bf4SSatish Balay           }
1366acdf5bf4SSatish Balay           imark = i;
1367acdf5bf4SSatish Balay         }
1368d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1369d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1370acdf5bf4SSatish Balay       }
1371d64ed03dSBarry Smith     } else {
1372f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1373f4259b30SLisandro Dalcin       if (v)   *v   = NULL;
1374d212a18eSSatish Balay     }
1375acdf5bf4SSatish Balay   }
1376acdf5bf4SSatish Balay   *nz  = nztot;
13779566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA));
13789566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB));
13793a40ed3dSBarry Smith   PetscFunctionReturn(0);
1380acdf5bf4SSatish Balay }
1381acdf5bf4SSatish Balay 
1382b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1383acdf5bf4SSatish Balay {
1384acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1385d64ed03dSBarry Smith 
1386d64ed03dSBarry Smith   PetscFunctionBegin;
13875f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1388acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13893a40ed3dSBarry Smith   PetscFunctionReturn(0);
1390acdf5bf4SSatish Balay }
1391acdf5bf4SSatish Balay 
1392dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
139358667388SSatish Balay {
139458667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1395d64ed03dSBarry Smith 
1396d64ed03dSBarry Smith   PetscFunctionBegin;
13979566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13989566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
13993a40ed3dSBarry Smith   PetscFunctionReturn(0);
140058667388SSatish Balay }
14010ac07820SSatish Balay 
1402dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
14030ac07820SSatish Balay {
14044e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
14054e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
14063966268fSBarry Smith   PetscLogDouble isend[5],irecv[5];
14070ac07820SSatish Balay 
1408d64ed03dSBarry Smith   PetscFunctionBegin;
1409d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
141026fbe8dcSKarl Rupp 
14119566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A,MAT_LOCAL,info));
141226fbe8dcSKarl Rupp 
14130e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1414de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
141526fbe8dcSKarl Rupp 
14169566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B,MAT_LOCAL,info));
141726fbe8dcSKarl Rupp 
14180e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1419de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
142026fbe8dcSKarl Rupp 
14210ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14224e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14234e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14244e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14254e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14264e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14270ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14281c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_MAX,PetscObjectComm((PetscObject)matin)));
142926fbe8dcSKarl Rupp 
14304e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14314e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14324e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14334e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14344e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14350ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14361c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend,irecv,5,MPIU_PETSCLOGDOUBLE,MPI_SUM,PetscObjectComm((PetscObject)matin)));
143726fbe8dcSKarl Rupp 
14384e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14394e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14404e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14414e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14424e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
144398921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14444e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14454e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14464e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14473a40ed3dSBarry Smith   PetscFunctionReturn(0);
14480ac07820SSatish Balay }
14490ac07820SSatish Balay 
1450ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
145158667388SSatish Balay {
145258667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
145358667388SSatish Balay 
1454d64ed03dSBarry Smith   PetscFunctionBegin;
145512c028f9SKris Buschelman   switch (op) {
1456512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
145712c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
145828b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1459a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
146012c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
146143674050SBarry Smith     MatCheckPreallocated(A,1);
14629566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14639566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
146412c028f9SKris Buschelman     break;
146512c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
146643674050SBarry Smith     MatCheckPreallocated(A,1);
14674e0d8c25SBarry Smith     a->roworiented = flg;
146826fbe8dcSKarl Rupp 
14699566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
14709566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B,op,flg));
147112c028f9SKris Buschelman     break;
14728c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
1473071fcb05SBarry Smith   case MAT_SORTED_FULL:
14749566063dSJacob Faibussowitsch     PetscCall(PetscInfo(A,"Option %s ignored\n",MatOptions[op]));
147512c028f9SKris Buschelman     break;
147612c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14774e0d8c25SBarry Smith     a->donotstash = flg;
147812c028f9SKris Buschelman     break;
147912c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14804e0d8c25SBarry Smith     a->ht_flag = flg;
1481abf3b562SBarry Smith     a->ht_fact = 1.39;
148212c028f9SKris Buschelman     break;
148377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
148477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14852188ac68SBarry Smith   case MAT_HERMITIAN:
1486c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
14872188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
148843674050SBarry Smith     MatCheckPreallocated(A,1);
14899566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A,op,flg));
149077e54ba9SKris Buschelman     break;
149112c028f9SKris Buschelman   default:
149298921bdaSJacob Faibussowitsch     SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1493d64ed03dSBarry Smith   }
14943a40ed3dSBarry Smith   PetscFunctionReturn(0);
149558667388SSatish Balay }
149658667388SSatish Balay 
1497fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14980ac07820SSatish Balay {
14990ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
15000ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
15010ac07820SSatish Balay   Mat            B;
1502d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1503d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
15043eda8832SBarry Smith   MatScalar      *a;
15050ac07820SSatish Balay 
1506d64ed03dSBarry Smith   PetscFunctionBegin;
1507cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
15089566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
15099566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->cmap->n,A->rmap->n,N,M));
15109566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,((PetscObject)A)->type_name));
15112e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
15129566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL));
1513fc4dec0aSBarry Smith   } else {
1514fc4dec0aSBarry Smith     B = *matout;
1515fc4dec0aSBarry Smith   }
15160ac07820SSatish Balay 
15170ac07820SSatish Balay   /* copy over the A part */
15180ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
15190ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
15209566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs,&rvals));
15210ac07820SSatish Balay 
15220ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1523899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
152426fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15250ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1526899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
15270ac07820SSatish Balay       for (k=0; k<bs; k++) {
15289566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES));
152926fbe8dcSKarl Rupp 
15300ac07820SSatish Balay         col++; a += bs;
15310ac07820SSatish Balay       }
15320ac07820SSatish Balay     }
15330ac07820SSatish Balay   }
15340ac07820SSatish Balay   /* copy over the B part */
15350ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
15360ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
15370ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1538899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
153926fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
15400ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15410ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15420ac07820SSatish Balay       for (k=0; k<bs; k++) {
15439566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES));
154426fbe8dcSKarl Rupp         col++;
154526fbe8dcSKarl Rupp         a += bs;
15460ac07820SSatish Balay       }
15470ac07820SSatish Balay     }
15480ac07820SSatish Balay   }
15499566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15509566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
15519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
15520ac07820SSatish Balay 
1553cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
155426fbe8dcSKarl Rupp   else {
15559566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(A,&B));
15560ac07820SSatish Balay   }
15573a40ed3dSBarry Smith   PetscFunctionReturn(0);
15580ac07820SSatish Balay }
15590e95ebc0SSatish Balay 
1560dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15610e95ebc0SSatish Balay {
156236c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
156336c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1564b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15650e95ebc0SSatish Balay 
1566d64ed03dSBarry Smith   PetscFunctionBegin;
15679566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&s2,&s3));
156836c4a09eSSatish Balay   if (rr) {
15699566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr,&s1));
15705f80ce2aSJacob Faibussowitsch     PetscCheck(s1==s3,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
157136c4a09eSSatish Balay     /* Overlap communication with computation. */
15729566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
157336c4a09eSSatish Balay   }
15740e95ebc0SSatish Balay   if (ll) {
15759566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll,&s1));
15765f80ce2aSJacob Faibussowitsch     PetscCheck(s1==s2,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
15779566063dSJacob Faibussowitsch     PetscCall((*b->ops->diagonalscale)(b,ll,NULL));
15780e95ebc0SSatish Balay   }
157936c4a09eSSatish Balay   /* scale  the diagonal block */
15809566063dSJacob Faibussowitsch   PetscCall((*a->ops->diagonalscale)(a,ll,rr));
158136c4a09eSSatish Balay 
158236c4a09eSSatish Balay   if (rr) {
158336c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15849566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD));
15859566063dSJacob Faibussowitsch     PetscCall((*b->ops->diagonalscale)(b,NULL,baij->lvec));
158636c4a09eSSatish Balay   }
15873a40ed3dSBarry Smith   PetscFunctionReturn(0);
15880e95ebc0SSatish Balay }
15890e95ebc0SSatish Balay 
15902b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
15910ac07820SSatish Balay {
15920ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
159365a92638SMatthew G. Knepley   PetscInt      *lrows;
15946e520ac8SStefano Zampini   PetscInt       r, len;
159594342113SStefano Zampini   PetscBool      cong;
15960ac07820SSatish Balay 
1597d64ed03dSBarry Smith   PetscFunctionBegin;
15986e520ac8SStefano Zampini   /* get locally owned rows */
15999566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A,N,rows,&len,&lrows));
160097b48c8fSBarry Smith   /* fix right hand side if needed */
160197b48c8fSBarry Smith   if (x && b) {
160265a92638SMatthew G. Knepley     const PetscScalar *xx;
160365a92638SMatthew G. Knepley     PetscScalar       *bb;
160465a92638SMatthew G. Knepley 
16059566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x,&xx));
16069566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
160765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
16089566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x,&xx));
16099566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
161097b48c8fSBarry Smith   }
161197b48c8fSBarry Smith 
16120ac07820SSatish Balay   /* actually zap the local rows */
161372dacd9aSBarry Smith   /*
161472dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1615a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
161672dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
161772dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
161872dacd9aSBarry Smith 
161972dacd9aSBarry Smith   */
16209c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16219566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL));
16229566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A,&cong));
162394342113SStefano Zampini   if ((diag != 0.0) && cong) {
16249566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL));
1625f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16269566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL));
16275f80ce2aSJacob Faibussowitsch     PetscCheck(!((Mat_SeqBAIJ*)l->A->data)->nonew,PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1628512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
162965a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
163065a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16319566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES));
1632a07cd24cSSatish Balay     }
16339566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
16349566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
16359c957beeSSatish Balay   } else {
16369566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL));
1637a07cd24cSSatish Balay   }
16389566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16394f9cfa9eSBarry Smith 
16404f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16414f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1642e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16431c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A)));
1644e56f5c9eSBarry Smith   }
16453a40ed3dSBarry Smith   PetscFunctionReturn(0);
16460ac07820SSatish Balay }
164772dacd9aSBarry Smith 
16486f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
16496f0a72daSMatthew G. Knepley {
16506f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
1651131c27b5Sprj-   PetscMPIInt       n = A->rmap->n,p = 0;
1652131c27b5Sprj-   PetscInt          i,j,k,r,len = 0,row,col,count;
16536f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
16546f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16556f0a72daSMatthew G. Knepley   PetscSF           sf;
16566f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16576f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
16586f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
16596f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
16606f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16616f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16626f0a72daSMatthew G. Knepley 
16636f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16646f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16666f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16679566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16686f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16696f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
16705f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")",idx,A->rmap->N);
16715ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
16729566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap,idx,&p));
16735ba17502SJed Brown     }
16746f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16756f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16766f0a72daSMatthew G. Knepley   }
16779566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject) A), &sf));
16789566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16796f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16809566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR));
16819566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR));
16829566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16836f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16846f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
16856f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16869566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A,len,lrows,diag,x,b));
16876f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
16889566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A,&xmask,NULL));
16899566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec,&lmask));
16909566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask,&bb));
16916f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
16929566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask,&bb));
16939566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD));
16949566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD));
16959566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
16966f0a72daSMatthew G. Knepley   if (x) {
16979566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD));
16989566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD));
16999566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec,&xx));
17009566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b,&bb));
17016f0a72daSMatthew G. Knepley   }
17029566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask,&mask));
17036f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
17046f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
17056f0a72daSMatthew G. Knepley     row   = lrows[i];
17066f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
17076f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
17086f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
17096f0a72daSMatthew G. Knepley       aa[0] = 0.0;
17106f0a72daSMatthew G. Knepley       aa   += bs;
17116f0a72daSMatthew G. Knepley     }
17126f0a72daSMatthew G. Knepley   }
17136f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
17146f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
17156f0a72daSMatthew G. Knepley     row = i/bs;
17166f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
17176f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
17186f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
17196f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17206f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
172189ae1891SBarry Smith           if (x) bb[i] -= aa[0]*xx[col];
17226f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17236f0a72daSMatthew G. Knepley         }
17246f0a72daSMatthew G. Knepley       }
17256f0a72daSMatthew G. Knepley     }
17266f0a72daSMatthew G. Knepley   }
17276f0a72daSMatthew G. Knepley   if (x) {
17289566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b,&bb));
17299566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec,&xx));
17306f0a72daSMatthew G. Knepley   }
17319566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask,&mask));
17329566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17339566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17344f9cfa9eSBarry Smith 
17354f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17364f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
17374f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17381c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A)));
17394f9cfa9eSBarry Smith   }
17406f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
17416f0a72daSMatthew G. Knepley }
17426f0a72daSMatthew G. Knepley 
1743dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1744bb5a7306SBarry Smith {
1745bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1746d64ed03dSBarry Smith 
1747d64ed03dSBarry Smith   PetscFunctionBegin;
17489566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17493a40ed3dSBarry Smith   PetscFunctionReturn(0);
1750bb5a7306SBarry Smith }
1751bb5a7306SBarry Smith 
17526849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
17530ac07820SSatish Balay 
1754ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
17557fc3c18eSBarry Smith {
17567fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17577fc3c18eSBarry Smith   Mat            a,b,c,d;
1758ace3abfcSBarry Smith   PetscBool      flg;
17597fc3c18eSBarry Smith 
17607fc3c18eSBarry Smith   PetscFunctionBegin;
17617fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17627fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17637fc3c18eSBarry Smith 
17649566063dSJacob Faibussowitsch   PetscCall(MatEqual(a,c,&flg));
1765abc0a331SBarry Smith   if (flg) {
17669566063dSJacob Faibussowitsch     PetscCall(MatEqual(b,d,&flg));
17677fc3c18eSBarry Smith   }
17681c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A)));
17697fc3c18eSBarry Smith   PetscFunctionReturn(0);
17707fc3c18eSBarry Smith }
17717fc3c18eSBarry Smith 
17723c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17733c896bc6SHong Zhang {
17743c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
17753c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
17763c896bc6SHong Zhang 
17773c896bc6SHong Zhang   PetscFunctionBegin;
17783c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17793c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17809566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A,B,str));
17813c896bc6SHong Zhang   } else {
17829566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A,b->A,str));
17839566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B,b->B,str));
17843c896bc6SHong Zhang   }
17859566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17863c896bc6SHong Zhang   PetscFunctionReturn(0);
17873c896bc6SHong Zhang }
1788273d9f13SBarry Smith 
17894994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
1790273d9f13SBarry Smith {
1791273d9f13SBarry Smith   PetscFunctionBegin;
17929566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,NULL,PETSC_DEFAULT,NULL));
1793273d9f13SBarry Smith   PetscFunctionReturn(0);
1794273d9f13SBarry Smith }
1795273d9f13SBarry Smith 
17964de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
17974de5dceeSHong Zhang {
1798001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
17994de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
18004de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
18014de5dceeSHong Zhang 
18024de5dceeSHong Zhang   PetscFunctionBegin;
18039566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz));
18044de5dceeSHong Zhang   PetscFunctionReturn(0);
18054de5dceeSHong Zhang }
18064de5dceeSHong Zhang 
18074fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
18084fe895cdSHong Zhang {
18094fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
18104fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
18114fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
1812b31f67cfSBarry Smith   PetscInt       bs2 = Y->rmap->bs*Y->rmap->bs;
18134fe895cdSHong Zhang 
18144fe895cdSHong Zhang   PetscFunctionBegin;
18154fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
18164fe895cdSHong Zhang     PetscScalar alpha = a;
18174fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
18184fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
18199566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz));
18208b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18214fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
18224fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
18239566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz*bs2,&bnz));
18248b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
18259566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1826ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18279566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y,a,X,str));
18284fe895cdSHong Zhang   } else {
18294de5dceeSHong Zhang     Mat      B;
18304de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
18319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N,&nnz_d));
18329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N,&nnz_o));
18339566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y),&B));
18349566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name));
18359566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N));
18369566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B,Y,Y));
18379566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPIBAIJ));
18389566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d));
18399566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o));
18409566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o));
18414de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18429566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B,Y,a,X,str));
18439566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y,&B));
18449566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18459566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18464fe895cdSHong Zhang   }
18474fe895cdSHong Zhang   PetscFunctionReturn(0);
18484fe895cdSHong Zhang }
18494fe895cdSHong Zhang 
18502726fb6dSPierre Jolivet PetscErrorCode MatConjugate_MPIBAIJ(Mat mat)
18512726fb6dSPierre Jolivet {
18525f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18535f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18542726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data;
18552726fb6dSPierre Jolivet 
18569566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18579566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18585f80ce2aSJacob Faibussowitsch   }
18592726fb6dSPierre Jolivet   PetscFunctionReturn(0);
18602726fb6dSPierre Jolivet }
18612726fb6dSPierre Jolivet 
186299cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
186399cafbc1SBarry Smith {
186499cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
186599cafbc1SBarry Smith 
186699cafbc1SBarry Smith   PetscFunctionBegin;
18679566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18689566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
186999cafbc1SBarry Smith   PetscFunctionReturn(0);
187099cafbc1SBarry Smith }
187199cafbc1SBarry Smith 
187299cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
187399cafbc1SBarry Smith {
187499cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
187599cafbc1SBarry Smith 
187699cafbc1SBarry Smith   PetscFunctionBegin;
18779566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18789566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
187999cafbc1SBarry Smith   PetscFunctionReturn(0);
188099cafbc1SBarry Smith }
188199cafbc1SBarry Smith 
18827dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
18834aa3045dSJed Brown {
18844aa3045dSJed Brown   IS             iscol_local;
18854aa3045dSJed Brown   PetscInt       csize;
18864aa3045dSJed Brown 
18874aa3045dSJed Brown   PetscFunctionBegin;
18889566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol,&csize));
1889b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18909566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local));
18915f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1892b79d0421SJed Brown   } else {
18939566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol,&iscol_local));
1894b79d0421SJed Brown   }
18959566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat));
1896b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
18979566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local));
18989566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1899b79d0421SJed Brown   }
19004aa3045dSJed Brown   PetscFunctionReturn(0);
19014aa3045dSJed Brown }
190217df9f7cSHong Zhang 
190382094794SBarry Smith /*
190482094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
190582094794SBarry Smith   in local and then by concatenating the local matrices the end result.
19067dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
19078f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
190882094794SBarry Smith */
19097dae84e0SHong Zhang PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
191082094794SBarry Smith {
191182094794SBarry Smith   PetscMPIInt    rank,size;
191282094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
1913c9ffca76SHong Zhang   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
191429dcf524SDmitry Karpeev   Mat            M,Mreuse;
191582094794SBarry Smith   MatScalar      *vwork,*aa;
1916ce94432eSBarry Smith   MPI_Comm       comm;
191729dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
191882094794SBarry Smith   Mat_SeqBAIJ    *aij;
191982094794SBarry Smith 
192082094794SBarry Smith   PetscFunctionBegin;
19219566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat,&comm));
19229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm,&rank));
19239566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
192429dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
192529dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
19269566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new));
19279566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new));
192882094794SBarry Smith 
192982094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
19309566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse));
19315f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
19329566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&Mreuse));
193382094794SBarry Smith   } else {
19349566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&Mreuse));
193582094794SBarry Smith   }
19369566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19379566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
193882094794SBarry Smith   /*
193982094794SBarry Smith       m - number of local rows
194082094794SBarry Smith       n - number of columns (same on all processors)
194182094794SBarry Smith       rstart - first row in new global matrix generated
194282094794SBarry Smith   */
19439566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat,&bs));
19449566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse,&m,&n));
194582094794SBarry Smith   m    = m/bs;
194682094794SBarry Smith   n    = n/bs;
194782094794SBarry Smith 
194882094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
194982094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
195082094794SBarry Smith     ii  = aij->i;
195182094794SBarry Smith     jj  = aij->j;
195282094794SBarry Smith 
195382094794SBarry Smith     /*
195482094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
195582094794SBarry Smith         portions of the matrix in order to do correct preallocation
195682094794SBarry Smith     */
195782094794SBarry Smith 
195882094794SBarry Smith     /* first get start and end of "diagonal" columns */
195982094794SBarry Smith     if (csize == PETSC_DECIDE) {
19609566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow,&mglobal));
196182094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
196282094794SBarry Smith         nlocal = m;
196382094794SBarry Smith       } else {
196482094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
196582094794SBarry Smith       }
196682094794SBarry Smith     } else {
196782094794SBarry Smith       nlocal = csize/bs;
196882094794SBarry Smith     }
19699566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm));
197082094794SBarry Smith     rstart = rend - nlocal;
1971aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT,rend,n);
197282094794SBarry Smith 
197382094794SBarry Smith     /* next, compute all the lengths */
19749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m+1,&dlens,m+1,&olens));
197582094794SBarry Smith     for (i=0; i<m; i++) {
197682094794SBarry Smith       jend = ii[i+1] - ii[i];
197782094794SBarry Smith       olen = 0;
197882094794SBarry Smith       dlen = 0;
197982094794SBarry Smith       for (j=0; j<jend; j++) {
198082094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
198182094794SBarry Smith         else dlen++;
198282094794SBarry Smith         jj++;
198382094794SBarry Smith       }
198482094794SBarry Smith       olens[i] = olen;
198582094794SBarry Smith       dlens[i] = dlen;
198682094794SBarry Smith     }
19879566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm,&M));
19889566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n));
19899566063dSJacob Faibussowitsch     PetscCall(MatSetType(M,((PetscObject)mat)->type_name));
19909566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens));
19919566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens));
19929566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens,olens));
199382094794SBarry Smith   } else {
199482094794SBarry Smith     PetscInt ml,nl;
199582094794SBarry Smith 
199682094794SBarry Smith     M    = *newmat;
19979566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M,&ml,&nl));
19985f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m,PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
19999566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
200082094794SBarry Smith     /*
200182094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
200282094794SBarry Smith        rather than the slower MatSetValues().
200382094794SBarry Smith     */
200482094794SBarry Smith     M->was_assembled = PETSC_TRUE;
200582094794SBarry Smith     M->assembled     = PETSC_FALSE;
200682094794SBarry Smith   }
20079566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE));
20089566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M,&rstart,&rend));
200982094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
201082094794SBarry Smith   ii   = aij->i;
201182094794SBarry Smith   jj   = aij->j;
201282094794SBarry Smith   aa   = aij->a;
201382094794SBarry Smith   for (i=0; i<m; i++) {
201482094794SBarry Smith     row   = rstart/bs + i;
201582094794SBarry Smith     nz    = ii[i+1] - ii[i];
201682094794SBarry Smith     cwork = jj;     jj += nz;
201775f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
20189566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES));
201982094794SBarry Smith   }
202082094794SBarry Smith 
20219566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY));
20229566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY));
202382094794SBarry Smith   *newmat = M;
202482094794SBarry Smith 
202582094794SBarry Smith   /* save submatrix used in processor for next request */
202682094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
20279566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse));
20289566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
202982094794SBarry Smith   }
203082094794SBarry Smith   PetscFunctionReturn(0);
203182094794SBarry Smith }
203282094794SBarry Smith 
203382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
203482094794SBarry Smith {
203582094794SBarry Smith   MPI_Comm       comm,pcomm;
2036a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
203782094794SBarry Smith   const PetscInt *rows;
2038dbf0e21dSBarry Smith   PetscMPIInt    size;
2039a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
204082094794SBarry Smith 
204182094794SBarry Smith   PetscFunctionBegin;
20429566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A,&comm));
204382094794SBarry Smith   /* make a collective version of 'rowp' */
20449566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp,&pcomm));
204582094794SBarry Smith   if (pcomm==comm) {
204682094794SBarry Smith     crowp = rowp;
204782094794SBarry Smith   } else {
20489566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp,&nrows));
20499566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp,&rows));
20509566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp));
20519566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp,&rows));
205282094794SBarry Smith   }
20539566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2054a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20559566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp,&pcomm));
20569566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm,&size));
2057dbf0e21dSBarry Smith   if (size==1) {
205882094794SBarry Smith     lcolp = colp;
205982094794SBarry Smith   } else {
20609566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp,&lcolp));
206182094794SBarry Smith   }
20629566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
206375f6568bSJed Brown   /* now we just get the submatrix */
20649566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A,NULL,&clocal_size));
20659566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B));
2066a0a83eb5SRémi Lacroix   /* clean up */
2067a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
20689566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&crowp));
2069a0a83eb5SRémi Lacroix   }
2070dbf0e21dSBarry Smith   if (size>1) {
20719566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&lcolp));
207282094794SBarry Smith   }
207382094794SBarry Smith   PetscFunctionReturn(0);
207482094794SBarry Smith }
207582094794SBarry Smith 
20767087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
20778c7482ecSBarry Smith {
20788c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
20798c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
20808c7482ecSBarry Smith 
20818c7482ecSBarry Smith   PetscFunctionBegin;
208226fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
208326fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20848c7482ecSBarry Smith   PetscFunctionReturn(0);
20858c7482ecSBarry Smith }
20868c7482ecSBarry Smith 
2087d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2088f6d58c54SBarry Smith {
2089f6d58c54SBarry Smith   Mat            B;
2090f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2091f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2092f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2093f4259b30SLisandro Dalcin   PetscMPIInt    size,rank,*recvcounts = NULL,*displs = NULL;
2094f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2095f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2096f6d58c54SBarry Smith 
2097f6d58c54SBarry Smith   PetscFunctionBegin;
20989566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A),&size));
20999566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank));
2100f6d58c54SBarry Smith 
2101f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2102f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2103f6d58c54SBarry Smith   */
21049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N/bs,&lens));
2105f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2106f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2107f6d58c54SBarry Smith   }
21089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2*size,&recvcounts));
2109f6d58c54SBarry Smith   displs    = recvcounts + size;
2110f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2111f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2112f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2113f6d58c54SBarry Smith   }
21149566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A)));
2115f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2116f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2117f6d58c54SBarry Smith   */
21189566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&B));
21199566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE));
21209566063dSJacob Faibussowitsch   PetscCall(MatSetType(B,MATSEQAIJ));
21219566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B,0,lens));
2122f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2123f6d58c54SBarry Smith 
2124f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2125f6d58c54SBarry Smith     Copy my part of matrix column indices over
2126f6d58c54SBarry Smith   */
2127f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2128f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2129f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2130f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2131f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2132f6d58c54SBarry Smith   cnt        = 0;
2133f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2134f6d58c54SBarry Smith 
2135f6d58c54SBarry Smith     /* put in lower diagonal portion */
2136f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2137f6d58c54SBarry Smith     while (m > 0) {
2138f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2139f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2140f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2141f6d58c54SBarry Smith       m--;
2142f6d58c54SBarry Smith     }
2143f6d58c54SBarry Smith 
2144f6d58c54SBarry Smith     /* put in diagonal portion */
2145f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2146f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2147f6d58c54SBarry Smith     }
2148f6d58c54SBarry Smith 
2149f6d58c54SBarry Smith     /* put in upper diagonal portion */
2150f6d58c54SBarry Smith     while (m-- > 0) {
2151f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2152f6d58c54SBarry Smith     }
2153f6d58c54SBarry Smith   }
21545f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT,sendcount,cnt);
2155f6d58c54SBarry Smith 
2156f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2157f6d58c54SBarry Smith     Gather all column indices to all processors
2158f6d58c54SBarry Smith   */
2159f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2160f6d58c54SBarry Smith     recvcounts[i] = 0;
2161f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2162f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2163f6d58c54SBarry Smith     }
2164f6d58c54SBarry Smith   }
2165f6d58c54SBarry Smith   displs[0] = 0;
2166f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2167f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2168f6d58c54SBarry Smith   }
21699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A)));
2170f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2171f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2172f6d58c54SBarry Smith   */
2173f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21749566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen,lens,A->rmap->N/bs));
2175f6d58c54SBarry Smith   /* set the b->i indices */
2176f6d58c54SBarry Smith   b->i[0] = 0;
2177f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2178f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2179f6d58c54SBarry Smith   }
21809566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21819566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
21829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
21839566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2184f6d58c54SBarry Smith 
2185f6d58c54SBarry Smith   if (A->symmetric) {
21869566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE));
2187f6d58c54SBarry Smith   } else if (A->hermitian) {
21889566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE));
2189f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
21909566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE));
2191f6d58c54SBarry Smith   }
2192f6d58c54SBarry Smith   *newmat = B;
2193f6d58c54SBarry Smith   PetscFunctionReturn(0);
2194f6d58c54SBarry Smith }
2195f6d58c54SBarry Smith 
2196b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2197b1a666ecSBarry Smith {
2198b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2199f4259b30SLisandro Dalcin   Vec            bb1 = NULL;
2200b1a666ecSBarry Smith 
2201b1a666ecSBarry Smith   PetscFunctionBegin;
2202b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
22039566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2204b1a666ecSBarry Smith     PetscFunctionReturn(0);
2205b1a666ecSBarry Smith   }
2206b1a666ecSBarry Smith 
22074e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
22089566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(bb,&bb1));
22094e980039SJed Brown   }
22104e980039SJed Brown 
2211b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2212b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22139566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2214b1a666ecSBarry Smith       its--;
2215b1a666ecSBarry Smith     }
2216b1a666ecSBarry Smith 
2217b1a666ecSBarry Smith     while (its--) {
22189566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
22199566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
2220b1a666ecSBarry Smith 
2221b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22229566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
22239566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
2224b1a666ecSBarry Smith 
2225b1a666ecSBarry Smith       /* local sweep */
22269566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx));
2227b1a666ecSBarry Smith     }
2228b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2229b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22309566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2231b1a666ecSBarry Smith       its--;
2232b1a666ecSBarry Smith     }
2233b1a666ecSBarry Smith     while (its--) {
22349566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
22359566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
2236b1a666ecSBarry Smith 
2237b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22389566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
22399566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
2240b1a666ecSBarry Smith 
2241b1a666ecSBarry Smith       /* local sweep */
22429566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx));
2243b1a666ecSBarry Smith     }
2244b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2245b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
22469566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx));
2247b1a666ecSBarry Smith       its--;
2248b1a666ecSBarry Smith     }
2249b1a666ecSBarry Smith     while (its--) {
22509566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
22519566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD));
2252b1a666ecSBarry Smith 
2253b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
22549566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec,-1.0));
22559566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1));
2256b1a666ecSBarry Smith 
2257b1a666ecSBarry Smith       /* local sweep */
22589566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx));
2259b1a666ecSBarry Smith     }
2260ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2261b1a666ecSBarry Smith 
22629566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
2263b1a666ecSBarry Smith   PetscFunctionReturn(0);
2264b1a666ecSBarry Smith }
2265b1a666ecSBarry Smith 
2266857cbf51SRichard Tran Mills PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A,PetscInt type,PetscReal *reductions)
226747f7623dSRémi Lacroix {
226847f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
2269a873a8cdSSam Reynolds   PetscInt       m,N,i,*garray = aij->garray;
227047f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
227147f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
227247f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
227347f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
227447f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
227547f7623dSRémi Lacroix   PetscReal      *work;
227647f7623dSRémi Lacroix 
227747f7623dSRémi Lacroix   PetscFunctionBegin;
22789566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A,&m,&N));
22799566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N,&work));
2280857cbf51SRichard Tran Mills   if (type == NORM_2) {
228147f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
228247f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
228347f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
228447f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
228547f7623dSRémi Lacroix           a_val++;
228647f7623dSRémi Lacroix         }
228747f7623dSRémi Lacroix       }
228847f7623dSRémi Lacroix     }
228947f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
229047f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
229147f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
229247f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
229347f7623dSRémi Lacroix           b_val++;
229447f7623dSRémi Lacroix         }
229547f7623dSRémi Lacroix       }
229647f7623dSRémi Lacroix     }
2297857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
229847f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
229947f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
230047f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
230147f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
230247f7623dSRémi Lacroix           a_val++;
230347f7623dSRémi Lacroix         }
230447f7623dSRémi Lacroix       }
230547f7623dSRémi Lacroix     }
230647f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
230747f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
230847f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
230947f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
231047f7623dSRémi Lacroix           b_val++;
231147f7623dSRémi Lacroix         }
231247f7623dSRémi Lacroix       }
231347f7623dSRémi Lacroix     }
2314857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
231547f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
231647f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
231747f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
231847f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
231947f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
232047f7623dSRémi Lacroix           a_val++;
232147f7623dSRémi Lacroix         }
232247f7623dSRémi Lacroix       }
232347f7623dSRémi Lacroix     }
232447f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
232547f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
232647f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
232747f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
232847f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
232947f7623dSRémi Lacroix           b_val++;
233047f7623dSRémi Lacroix         }
233147f7623dSRémi Lacroix       }
233247f7623dSRémi Lacroix     }
2333857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2334a873a8cdSSam Reynolds     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
2335a873a8cdSSam Reynolds       for (jb=0; jb<bs; jb++) {
2336a873a8cdSSam Reynolds         for (ib=0; ib<bs; ib++) {
2337857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2338a873a8cdSSam Reynolds           a_val++;
2339a873a8cdSSam Reynolds         }
2340a873a8cdSSam Reynolds       }
2341a873a8cdSSam Reynolds     }
2342a873a8cdSSam Reynolds     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
2343a873a8cdSSam Reynolds       for (jb=0; jb<bs; jb++) {
2344a873a8cdSSam Reynolds        for (ib=0; ib<bs; ib++) {
2345857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2346a873a8cdSSam Reynolds           b_val++;
2347a873a8cdSSam Reynolds         }
2348a873a8cdSSam Reynolds       }
2349a873a8cdSSam Reynolds     }
2350857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2351857cbf51SRichard Tran Mills     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
2352857cbf51SRichard Tran Mills       for (jb=0; jb<bs; jb++) {
2353857cbf51SRichard Tran Mills         for (ib=0; ib<bs; ib++) {
2354857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2355857cbf51SRichard Tran Mills           a_val++;
2356857cbf51SRichard Tran Mills         }
2357857cbf51SRichard Tran Mills       }
2358857cbf51SRichard Tran Mills     }
2359857cbf51SRichard Tran Mills     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
2360857cbf51SRichard Tran Mills       for (jb=0; jb<bs; jb++) {
2361857cbf51SRichard Tran Mills        for (ib=0; ib<bs; ib++) {
2362857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2363857cbf51SRichard Tran Mills           b_val++;
2364857cbf51SRichard Tran Mills         }
2365857cbf51SRichard Tran Mills       }
2366857cbf51SRichard Tran Mills     }
2367857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown reduction type");
2368857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23691c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A)));
237047f7623dSRémi Lacroix   } else {
23711c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work,reductions,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A)));
237247f7623dSRémi Lacroix   }
23739566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2374857cbf51SRichard Tran Mills   if (type == NORM_2) {
2375a873a8cdSSam Reynolds     for (i=0; i<N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2376857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2377a873a8cdSSam Reynolds     for (i=0; i<N; i++) reductions[i] /= m;
237847f7623dSRémi Lacroix   }
237947f7623dSRémi Lacroix   PetscFunctionReturn(0);
238047f7623dSRémi Lacroix }
238147f7623dSRémi Lacroix 
2382713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2383bbead8a2SBarry Smith {
2384bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2385bbead8a2SBarry Smith 
2386bbead8a2SBarry Smith   PetscFunctionBegin;
23879566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A,values));
23887b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23897b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23907b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
2391bbead8a2SBarry Smith   PetscFunctionReturn(0);
2392bbead8a2SBarry Smith }
2393bbead8a2SBarry Smith 
23947d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a)
23957d68702bSBarry Smith {
23967d68702bSBarry Smith   Mat_MPIBAIJ    *maij = (Mat_MPIBAIJ*)Y->data;
23976f33a894SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)maij->A->data;
23987d68702bSBarry Smith 
23997d68702bSBarry Smith   PetscFunctionBegin;
24006f33a894SBarry Smith   if (!Y->preallocated) {
24019566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL));
24026f33a894SBarry Smith   } else if (!aij->nz) {
2403b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
24049566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL));
2405b83222d8SBarry Smith     aij->nonew = nonew;
24067d68702bSBarry Smith   }
24079566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y,a));
24087d68702bSBarry Smith   PetscFunctionReturn(0);
24097d68702bSBarry Smith }
24108c7482ecSBarry Smith 
24113b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
24123b49f96aSBarry Smith {
24133b49f96aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
24143b49f96aSBarry Smith 
24153b49f96aSBarry Smith   PetscFunctionBegin;
24165f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n,PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
24179566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A,missing,d));
24183b49f96aSBarry Smith   if (d) {
24193b49f96aSBarry Smith     PetscInt rstart;
24209566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A,&rstart,NULL));
24213b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
24223b49f96aSBarry Smith 
24233b49f96aSBarry Smith   }
24243b49f96aSBarry Smith   PetscFunctionReturn(0);
24253b49f96aSBarry Smith }
24263b49f96aSBarry Smith 
2427a5b7ff6bSBarry Smith PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
2428a5b7ff6bSBarry Smith {
2429a5b7ff6bSBarry Smith   PetscFunctionBegin;
2430a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
2431a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2432a5b7ff6bSBarry Smith }
2433a5b7ff6bSBarry Smith 
243479bdfe76SSatish Balay /* -------------------------------------------------------------------*/
24353964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2436cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2437cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2438cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
243997304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
24407c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
24417c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2442f4259b30SLisandro Dalcin                                        NULL,
2443f4259b30SLisandro Dalcin                                        NULL,
2444f4259b30SLisandro Dalcin                                        NULL,
2445f4259b30SLisandro Dalcin                                 /*10*/ NULL,
2446f4259b30SLisandro Dalcin                                        NULL,
2447f4259b30SLisandro Dalcin                                        NULL,
2448b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2449cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
245097304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
24517fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2452cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2453cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2454cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
245597304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2456cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2457cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2458cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2459d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2460f4259b30SLisandro Dalcin                                        NULL,
2461f4259b30SLisandro Dalcin                                        NULL,
2462f4259b30SLisandro Dalcin                                        NULL,
2463f4259b30SLisandro Dalcin                                        NULL,
24644994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2465f4259b30SLisandro Dalcin                                        NULL,
2466f4259b30SLisandro Dalcin                                        NULL,
2467a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2468f4259b30SLisandro Dalcin                                        NULL,
2469d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2470f4259b30SLisandro Dalcin                                        NULL,
2471f4259b30SLisandro Dalcin                                        NULL,
2472f4259b30SLisandro Dalcin                                        NULL,
2473f4259b30SLisandro Dalcin                                        NULL,
2474d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
24757dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2476cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2477cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24783c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2479f4259b30SLisandro Dalcin                                 /*44*/ NULL,
2480cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24817d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2482f4259b30SLisandro Dalcin                                        NULL,
24836f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2484f4259b30SLisandro Dalcin                                 /*49*/ NULL,
2485f4259b30SLisandro Dalcin                                        NULL,
2486f4259b30SLisandro Dalcin                                        NULL,
2487f4259b30SLisandro Dalcin                                        NULL,
2488f4259b30SLisandro Dalcin                                        NULL,
248993dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2490f4259b30SLisandro Dalcin                                        NULL,
2491cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
249282094794SBarry Smith                                        MatPermute_MPIBAIJ,
2493cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24947dae84e0SHong Zhang                                 /*59*/ MatCreateSubMatrix_MPIBAIJ,
2495f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2496f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2497f4259b30SLisandro Dalcin                                        NULL,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                 /*64*/ NULL,
2500f4259b30SLisandro Dalcin                                        NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2505f4259b30SLisandro Dalcin                                        NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                 /*74*/ NULL,
2510f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        NULL,
2513f4259b30SLisandro Dalcin                                        NULL,
2514f4259b30SLisandro Dalcin                                 /*79*/ NULL,
2515f4259b30SLisandro Dalcin                                        NULL,
2516f4259b30SLisandro Dalcin                                        NULL,
2517f4259b30SLisandro Dalcin                                        NULL,
25185bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2519f4259b30SLisandro Dalcin                                 /*84*/ NULL,
2520f4259b30SLisandro Dalcin                                        NULL,
2521f4259b30SLisandro Dalcin                                        NULL,
2522f4259b30SLisandro Dalcin                                        NULL,
2523f4259b30SLisandro Dalcin                                        NULL,
2524f4259b30SLisandro Dalcin                                 /*89*/ NULL,
2525f4259b30SLisandro Dalcin                                        NULL,
2526f4259b30SLisandro Dalcin                                        NULL,
2527f4259b30SLisandro Dalcin                                        NULL,
2528f4259b30SLisandro Dalcin                                        NULL,
2529f4259b30SLisandro Dalcin                                 /*94*/ NULL,
2530f4259b30SLisandro Dalcin                                        NULL,
2531f4259b30SLisandro Dalcin                                        NULL,
2532f4259b30SLisandro Dalcin                                        NULL,
2533f4259b30SLisandro Dalcin                                        NULL,
2534f4259b30SLisandro Dalcin                                 /*99*/ NULL,
2535f4259b30SLisandro Dalcin                                        NULL,
2536f4259b30SLisandro Dalcin                                        NULL,
25372726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2538f4259b30SLisandro Dalcin                                        NULL,
2539f4259b30SLisandro Dalcin                                 /*104*/NULL,
254099cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
25418c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2542f4259b30SLisandro Dalcin                                        NULL,
2543f4259b30SLisandro Dalcin                                        NULL,
2544f4259b30SLisandro Dalcin                                 /*109*/NULL,
2545f4259b30SLisandro Dalcin                                        NULL,
2546f4259b30SLisandro Dalcin                                        NULL,
2547f4259b30SLisandro Dalcin                                        NULL,
25483b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2549d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
2550f4259b30SLisandro Dalcin                                        NULL,
25514683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2552f4259b30SLisandro Dalcin                                        NULL,
2553f4259b30SLisandro Dalcin                                        NULL,
2554f4259b30SLisandro Dalcin                                 /*119*/NULL,
2555f4259b30SLisandro Dalcin                                        NULL,
2556f4259b30SLisandro Dalcin                                        NULL,
2557f4259b30SLisandro Dalcin                                        NULL,
2558e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2559f4259b30SLisandro Dalcin                                 /*124*/NULL,
2560a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
25613964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2562f4259b30SLisandro Dalcin                                        NULL,
2563f4259b30SLisandro Dalcin                                        NULL,
2564f4259b30SLisandro Dalcin                                /*129*/ NULL,
2565f4259b30SLisandro Dalcin                                        NULL,
2566f4259b30SLisandro Dalcin                                        NULL,
2567f4259b30SLisandro Dalcin                                        NULL,
2568f4259b30SLisandro Dalcin                                        NULL,
2569f4259b30SLisandro Dalcin                                /*134*/ NULL,
2570f4259b30SLisandro Dalcin                                        NULL,
2571f4259b30SLisandro Dalcin                                        NULL,
2572f4259b30SLisandro Dalcin                                        NULL,
2573f4259b30SLisandro Dalcin                                        NULL,
257446533700Sstefano_zampini                                /*139*/ MatSetBlockSizes_Default,
2575f4259b30SLisandro Dalcin                                        NULL,
2576f4259b30SLisandro Dalcin                                        NULL,
2577bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2578f4259b30SLisandro Dalcin                                        NULL,
2579d70f29a3SPierre Jolivet                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2580d70f29a3SPierre Jolivet                                        NULL,
2581d70f29a3SPierre Jolivet                                        NULL,
2582d70f29a3SPierre Jolivet                                        NULL
25838c7482ecSBarry Smith };
258479bdfe76SSatish Balay 
2585cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat,MatType,MatReuse,Mat*);
2586c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat,MatType,MatReuse,Mat*);
2587d94109b8SHong Zhang 
2588cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2589aac34f13SBarry Smith {
2590b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2591f4259b30SLisandro Dalcin   PetscInt       i,j,dlen,olen,nz,nz_max=0,*d_nnz=NULL,*o_nnz=NULL;
2592f4259b30SLisandro Dalcin   const PetscInt *JJ    =NULL;
2593f4259b30SLisandro Dalcin   PetscScalar    *values=NULL;
2594d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
25953bd0feecSPierre Jolivet   PetscBool      nooffprocentries;
2596aac34f13SBarry Smith 
2597aac34f13SBarry Smith   PetscFunctionBegin;
25989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap,bs));
25999566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap,bs));
26009566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
2603d0f46423SBarry Smith   m      = B->rmap->n/bs;
2604d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2605d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2606d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2607b8d659d7SLisandro Dalcin 
26085f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %" PetscInt_FMT,ii[0]);
26099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m,&d_nnz,m,&o_nnz));
2610aac34f13SBarry Smith   for (i=0; i<m; i++) {
2611cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
26125f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT,i,nz);
2613b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
261437cd3c0dSBarry Smith     dlen   = 0;
261537cd3c0dSBarry Smith     olen   = 0;
2616cf12db73SBarry Smith     JJ     = jj + ii[i];
2617b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
261837cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
261937cd3c0dSBarry Smith       else dlen++;
2620aac34f13SBarry Smith       JJ++;
2621aac34f13SBarry Smith     }
262237cd3c0dSBarry Smith     d_nnz[i] = dlen;
262337cd3c0dSBarry Smith     o_nnz[i] = olen;
2624aac34f13SBarry Smith   }
26259566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz));
26269566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz,o_nnz));
2627aac34f13SBarry Smith 
2628b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2629b8d659d7SLisandro Dalcin   if (!values) {
26309566063dSJacob Faibussowitsch     PetscCall(PetscCalloc1(bs*bs*nz_max,&values));
2631b8d659d7SLisandro Dalcin   }
2632b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2633b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2634cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2635cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2636bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2637cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
26389566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES));
26393adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
26403adadaf3SJed Brown       PetscInt j;
26413adadaf3SJed Brown       for (j=0; j<ncols; j++) {
26423adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
26439566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES));
26443adadaf3SJed Brown       }
26453adadaf3SJed Brown     }
2646aac34f13SBarry Smith   }
2647aac34f13SBarry Smith 
26489566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
26493bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
26503bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
26519566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
26529566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
26533bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
26543bd0feecSPierre Jolivet 
26559566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE));
2656aac34f13SBarry Smith   PetscFunctionReturn(0);
2657aac34f13SBarry Smith }
2658aac34f13SBarry Smith 
2659aac34f13SBarry Smith /*@C
2660664954b6SBarry Smith    MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values
2661aac34f13SBarry Smith 
2662d083f849SBarry Smith    Collective
2663aac34f13SBarry Smith 
2664aac34f13SBarry Smith    Input Parameters:
26651c4f3114SJed Brown +  B - the matrix
2666dfb205c3SBarry Smith .  bs - the block size
2667aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2668aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2669aac34f13SBarry Smith -  v - optional values in the matrix
2670aac34f13SBarry Smith 
2671664954b6SBarry Smith    Level: advanced
2672aac34f13SBarry Smith 
267395452b02SPatrick Sanan    Notes:
267495452b02SPatrick Sanan     The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
26753adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
26763adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
26773adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26783adadaf3SJed Brown    block column and the second index is over columns within a block.
26793adadaf3SJed Brown 
2680664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2681664954b6SBarry Smith 
2682db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ`
2683aac34f13SBarry Smith @*/
26847087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2685aac34f13SBarry Smith {
2686aac34f13SBarry Smith   PetscFunctionBegin;
26876ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
26886ba663aaSJed Brown   PetscValidType(B,1);
26896ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
2690cac4c232SBarry Smith   PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));
2691aac34f13SBarry Smith   PetscFunctionReturn(0);
2692aac34f13SBarry Smith }
2693aac34f13SBarry Smith 
2694b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2695a23d5eceSKris Buschelman {
2696a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2697535b19f3SBarry Smith   PetscInt       i;
26985d2a9ed1SStefano Zampini   PetscMPIInt    size;
2699a23d5eceSKris Buschelman 
2700a23d5eceSKris Buschelman   PetscFunctionBegin;
27019566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B,PetscAbs(bs)));
27029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
27039566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
27049566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap,&bs));
2705899cda47SBarry Smith 
2706a23d5eceSKris Buschelman   if (d_nnz) {
2707d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
27085f80ce2aSJacob Faibussowitsch       PetscCheck(d_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,d_nnz[i]);
2709a23d5eceSKris Buschelman     }
2710a23d5eceSKris Buschelman   }
2711a23d5eceSKris Buschelman   if (o_nnz) {
2712d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
27135f80ce2aSJacob Faibussowitsch       PetscCheck(o_nnz[i] >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT,i,o_nnz[i]);
2714a23d5eceSKris Buschelman     }
2715a23d5eceSKris Buschelman   }
2716a23d5eceSKris Buschelman 
2717a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
2718a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2719d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2720d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2721d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2722d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2723a23d5eceSKris Buschelman 
2724a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2725d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2726a23d5eceSKris Buschelman   }
2727d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2728d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2729d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2730d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2731a23d5eceSKris Buschelman 
2732cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
27339566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&b->colmap));
2734cb7b82ddSBarry Smith #else
27359566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2736cb7b82ddSBarry Smith #endif
27379566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
27389566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
27399566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2740cb7b82ddSBarry Smith 
2741cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
27429566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&size));
27439566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
27449566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF,&b->B));
27459566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B,B->rmap->n,size > 1 ? B->cmap->N : 0,B->rmap->n,size > 1 ? B->cmap->N : 0));
27469566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B,MATSEQBAIJ));
27479566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->B));
2748cb7b82ddSBarry Smith 
2749526dfc15SBarry Smith   if (!B->preallocated) {
27509566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF,&b->A));
27519566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n));
27529566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A,MATSEQBAIJ));
27539566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B,(PetscObject)b->A));
27549566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash));
2755526dfc15SBarry Smith   }
2756a23d5eceSKris Buschelman 
27579566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz));
27589566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz));
2759526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2760cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2761cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2762a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2763a23d5eceSKris Buschelman }
2764a23d5eceSKris Buschelman 
27657087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
27667087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
27675bf65638SKris Buschelman 
2768cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
276982094794SBarry Smith {
277082094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
277182094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
277282094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
277382094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
277482094794SBarry Smith 
277582094794SBarry Smith   PetscFunctionBegin;
27769566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M+1,&ii));
277782094794SBarry Smith   ii[0] = 0;
277882094794SBarry Smith   for (i=0; i<M; i++) {
277908401ef6SPierre Jolivet     PetscCheck((id[i+1] - id[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,id[i],id[i+1]);
278008401ef6SPierre Jolivet     PetscCheck((io[i+1] - io[i]) >= 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT,i,io[i],io[i+1]);
278182094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
27825ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27835ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
27845ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
27855ee9ba1cSJed Brown     }
278682094794SBarry Smith   }
27879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M],&jj));
278882094794SBarry Smith   cnt  = 0;
278982094794SBarry Smith   for (i=0; i<M; i++) {
279082094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
279182094794SBarry Smith       if (garray[jo[j]] > rstart) break;
279282094794SBarry Smith       jj[cnt++] = garray[jo[j]];
279382094794SBarry Smith     }
279482094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
27955ee9ba1cSJed Brown       if (jd[k] != i) {
279682094794SBarry Smith         jj[cnt++] = rstart + jd[k];
279782094794SBarry Smith       }
27985ee9ba1cSJed Brown     }
279982094794SBarry Smith     for (; j<io[i+1]; j++) {
280082094794SBarry Smith       jj[cnt++] = garray[jo[j]];
280182094794SBarry Smith     }
280282094794SBarry Smith   }
28039566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj));
280482094794SBarry Smith   PetscFunctionReturn(0);
280582094794SBarry Smith }
280682094794SBarry Smith 
2807c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
280862471d69SBarry Smith 
2809cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
2810b2573a8aSBarry Smith 
2811cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
281262471d69SBarry Smith {
281362471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
281485a69837SSatish Balay   Mat_MPIAIJ  *b;
28155f80ce2aSJacob Faibussowitsch   Mat         B;
281662471d69SBarry Smith 
281762471d69SBarry Smith   PetscFunctionBegin;
28185f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
281962471d69SBarry Smith 
28200f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28210f6d62edSLisandro Dalcin     B = *newmat;
28220f6d62edSLisandro Dalcin   } else {
28239566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A),&B));
28249566063dSJacob Faibussowitsch     PetscCall(MatSetType(B,MATMPIAIJ));
28259566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N));
28269566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs));
28279566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B,0,NULL));
28289566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B,0,NULL,0,NULL));
28290f6d62edSLisandro Dalcin   }
283062471d69SBarry Smith   b = (Mat_MPIAIJ*) B->data;
283162471d69SBarry Smith 
28320f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
28339566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
28349566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
28350f6d62edSLisandro Dalcin   } else {
28369566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
28379566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
28389566063dSJacob Faibussowitsch     PetscCall(MatDisAssemble_MPIBAIJ(A));
28399566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
28409566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
28419566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
28429566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
28430f6d62edSLisandro Dalcin   }
28449566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
28459566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
28460f6d62edSLisandro Dalcin 
2847511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
28489566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A,&B));
284962471d69SBarry Smith   } else {
285062471d69SBarry Smith    *newmat = B;
285162471d69SBarry Smith   }
285262471d69SBarry Smith   PetscFunctionReturn(0);
285362471d69SBarry Smith }
285462471d69SBarry Smith 
28550bad9183SKris Buschelman /*MC
2856fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
28570bad9183SKris Buschelman 
28580bad9183SKris Buschelman    Options Database Keys:
28598c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
28608c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
28616679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
286267b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
28630bad9183SKris Buschelman 
28640bad9183SKris Buschelman    Level: beginner
28650cd7f59aSBarry Smith 
28660cd7f59aSBarry Smith    Notes:
28670cd7f59aSBarry Smith     MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no
28680cd7f59aSBarry Smith     space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored
28690bad9183SKris Buschelman 
2870db781477SPatrick Sanan .seealso: `MatCreateBAIJ`
28710bad9183SKris Buschelman M*/
28720bad9183SKris Buschelman 
2873cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
2874c0cdd4a1SDahai Guo 
28758cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
2876273d9f13SBarry Smith {
2877273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
287894ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
2879273d9f13SBarry Smith 
2880273d9f13SBarry Smith   PetscFunctionBegin;
28819566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B,&b));
288282502324SSatish Balay   B->data = (void*)b;
288382502324SSatish Balay 
28849566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps)));
2885273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2886273d9f13SBarry Smith 
2887273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank));
28899566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size));
2890273d9f13SBarry Smith 
2891273d9f13SBarry Smith   /* build local table of row and column ownerships */
28929566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size+1,&b->rangebs));
2893273d9f13SBarry Smith 
2894273d9f13SBarry Smith   /* build cache for off array entries formed */
28959566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash));
289626fbe8dcSKarl Rupp 
2897273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28980298fd71SBarry Smith   b->colmap      = NULL;
28990298fd71SBarry Smith   b->garray      = NULL;
2900273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2901273d9f13SBarry Smith 
2902273d9f13SBarry Smith   /* stuff used in block assembly */
2903f4259b30SLisandro Dalcin   b->barray = NULL;
2904273d9f13SBarry Smith 
2905273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2906f4259b30SLisandro Dalcin   b->lvec  = NULL;
2907f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2908273d9f13SBarry Smith 
2909273d9f13SBarry Smith   /* stuff for MatGetRow() */
2910f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2911f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2912273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2913273d9f13SBarry Smith 
2914273d9f13SBarry Smith   /* hash table stuff */
2915f4259b30SLisandro Dalcin   b->ht           = NULL;
2916f4259b30SLisandro Dalcin   b->hd           = NULL;
2917273d9f13SBarry Smith   b->ht_size      = 0;
2918273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2919273d9f13SBarry Smith   b->ht_fact      = 0;
2920273d9f13SBarry Smith   b->ht_total_ct  = 0;
2921273d9f13SBarry Smith   b->ht_insert_ct = 0;
2922273d9f13SBarry Smith 
29237dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
29247a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
29257a868f3eSHong Zhang 
29269566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj));
29279566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ));
29289566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ));
29297ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
29309566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_hypre_C",MatConvert_AIJ_HYPRE));
29317ea3e4caSstefano_zampini #endif
29329566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ));
29339566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ));
29349566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ));
29359566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
29369566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ));
29379566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ));
29389566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_is_C",MatConvert_XAIJ_IS));
29399566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ));
294094ae4db5SBarry Smith 
2941d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");
29429566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table","Use hash table to save time in constructing matrix","MatSetOption",&flg));
294394ae4db5SBarry Smith   if (flg) {
294494ae4db5SBarry Smith     PetscReal fact = 1.39;
29459566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE));
29469566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL));
294794ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
29489566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B,fact));
29499566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B,"Hash table Factor used %5.2g\n",(double)fact));
295094ae4db5SBarry Smith   }
2951d0609cedSBarry Smith   PetscOptionsEnd();
2952273d9f13SBarry Smith   PetscFunctionReturn(0);
2953273d9f13SBarry Smith }
2954273d9f13SBarry Smith 
2955209238afSKris Buschelman /*MC
2956002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2957209238afSKris Buschelman 
2958209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2959209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2960209238afSKris Buschelman 
2961209238afSKris Buschelman    Options Database Keys:
2962209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2963209238afSKris Buschelman 
2964209238afSKris Buschelman   Level: beginner
2965209238afSKris Buschelman 
2966c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2967209238afSKris Buschelman M*/
2968209238afSKris Buschelman 
2969273d9f13SBarry Smith /*@C
2970aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2971273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2972273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2973273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2974273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2975273d9f13SBarry Smith 
2976273d9f13SBarry Smith    Collective on Mat
2977273d9f13SBarry Smith 
2978273d9f13SBarry Smith    Input Parameters:
29791c4f3114SJed Brown +  B - the matrix
2980bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2981bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2982273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2983273d9f13SBarry Smith            submatrix  (same for all local rows)
2984273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2985273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
29860298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
298795742e49SBarry Smith            set it even if it is zero.
2988273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2989273d9f13SBarry Smith            submatrix (same for all local rows).
2990273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2991273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
29920298fd71SBarry Smith            each block row) or NULL.
2993273d9f13SBarry Smith 
299449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2995273d9f13SBarry Smith 
2996273d9f13SBarry Smith    Options Database Keys:
29978c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
299867b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
2999273d9f13SBarry Smith 
3000273d9f13SBarry Smith    Notes:
3001273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3002273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3003273d9f13SBarry Smith 
3004273d9f13SBarry Smith    Storage Information:
3005273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3006273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3007273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3008273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3009273d9f13SBarry Smith 
3010273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3011273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
30120298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3013273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3014273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3015273d9f13SBarry Smith 
3016273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3017273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3018273d9f13SBarry Smith 
3019273d9f13SBarry Smith .vb
3020273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3021a4b1a0f6SJed Brown           --------------------------
3022273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3023273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3024273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3025a4b1a0f6SJed Brown           --------------------------
3026273d9f13SBarry Smith .ve
3027273d9f13SBarry Smith 
3028273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3029273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3030273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3031273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3032273d9f13SBarry Smith 
3033273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3034273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3035273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3036273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3037273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3038273d9f13SBarry Smith    matrices.
3039273d9f13SBarry Smith 
3040aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3041aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3042aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3043aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3044aa95bbe8SBarry Smith 
3045273d9f13SBarry Smith    Level: intermediate
3046273d9f13SBarry Smith 
3047db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
3048273d9f13SBarry Smith @*/
30497087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3050273d9f13SBarry Smith {
3051273d9f13SBarry Smith   PetscFunctionBegin;
30526ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
30536ba663aaSJed Brown   PetscValidType(B,1);
30546ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
3055cac4c232SBarry Smith   PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));
3056273d9f13SBarry Smith   PetscFunctionReturn(0);
3057273d9f13SBarry Smith }
3058273d9f13SBarry Smith 
305979bdfe76SSatish Balay /*@C
306069b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
306179bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
306279bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
306379bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
306479bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
306579bdfe76SSatish Balay 
3066d083f849SBarry Smith    Collective
3067db81eaa0SLois Curfman McInnes 
306879bdfe76SSatish Balay    Input Parameters:
3069db81eaa0SLois Curfman McInnes +  comm - MPI communicator
3070bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3071bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
307279bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
307392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307492e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
307592e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
307692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
307792e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3078be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3079be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
308047a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
308179bdfe76SSatish Balay            submatrix  (same for all local rows)
308247a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
308392e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30840298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
308595742e49SBarry Smith            and set it even if it is zero.
308647a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
308779bdfe76SSatish Balay            submatrix (same for all local rows).
308847a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
308992e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30900298fd71SBarry Smith            each block row) or NULL.
309179bdfe76SSatish Balay 
309279bdfe76SSatish Balay    Output Parameter:
309379bdfe76SSatish Balay .  A - the matrix
309479bdfe76SSatish Balay 
3095db81eaa0SLois Curfman McInnes    Options Database Keys:
30968c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
309767b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
30983ffaccefSLois Curfman McInnes 
3099175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3100f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3101175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3102175b88e8SBarry Smith 
3103b259b22eSLois Curfman McInnes    Notes:
310449a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
310549a6f317SBarry Smith 
310647a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
310747a75d0bSBarry Smith 
310879bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
310979bdfe76SSatish Balay    (possibly both).
311079bdfe76SSatish Balay 
3111be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3112be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3113be79a94dSBarry Smith 
311479bdfe76SSatish Balay    Storage Information:
311579bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
311679bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
311779bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
311879bdfe76SSatish Balay    local matrix (a rectangular submatrix).
311979bdfe76SSatish Balay 
312079bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
312179bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
31220298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
312379bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
312479bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
312579bdfe76SSatish Balay 
312679bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
312779bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
312879bdfe76SSatish Balay 
3129db81eaa0SLois Curfman McInnes .vb
3130db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3131a4b1a0f6SJed Brown           --------------------------
3132db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3133db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3134db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3135a4b1a0f6SJed Brown           --------------------------
3136db81eaa0SLois Curfman McInnes .ve
313779bdfe76SSatish Balay 
313879bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
313979bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
314079bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
314157b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
314279bdfe76SSatish Balay 
3143d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3144d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
314579bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
314692e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
314792e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
31486da5968aSLois Curfman McInnes    matrices.
314979bdfe76SSatish Balay 
3150027ccd11SLois Curfman McInnes    Level: intermediate
3151027ccd11SLois Curfman McInnes 
3152db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
315379bdfe76SSatish Balay @*/
315469b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
315579bdfe76SSatish Balay {
3156b24ad042SBarry Smith   PetscMPIInt    size;
315779bdfe76SSatish Balay 
3158d64ed03dSBarry Smith   PetscFunctionBegin;
31599566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,A));
31609566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A,m,n,M,N));
31619566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm,&size));
3162273d9f13SBarry Smith   if (size > 1) {
31639566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATMPIBAIJ));
31649566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz));
3165273d9f13SBarry Smith   } else {
31669566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A,MATSEQBAIJ));
31679566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz));
31683914022bSBarry Smith   }
31693a40ed3dSBarry Smith   PetscFunctionReturn(0);
317079bdfe76SSatish Balay }
3171026e39d0SSatish Balay 
31726849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
31730ac07820SSatish Balay {
31740ac07820SSatish Balay   Mat            mat;
31750ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3176b24ad042SBarry Smith   PetscInt       len=0;
31770ac07820SSatish Balay 
3178d64ed03dSBarry Smith   PetscFunctionBegin;
3179f4259b30SLisandro Dalcin   *newmat = NULL;
31809566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin),&mat));
31819566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N));
31829566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat,((PetscObject)matin)->type_name));
31837fff6886SHong Zhang 
3184d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3185273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
31860ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
31877fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
31887fff6886SHong Zhang 
3189273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3190d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
31910ac07820SSatish Balay   a->bs2        = oldmat->bs2;
31920ac07820SSatish Balay   a->mbs        = oldmat->mbs;
31930ac07820SSatish Balay   a->nbs        = oldmat->nbs;
31940ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
31950ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
31960ac07820SSatish Balay 
31979566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap,&mat->rmap));
31989566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap,&mat->cmap));
3199899cda47SBarry Smith 
32000ac07820SSatish Balay   a->size         = oldmat->size;
32010ac07820SSatish Balay   a->rank         = oldmat->rank;
3202aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3203aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3204f4259b30SLisandro Dalcin   a->rowindices   = NULL;
3205f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
32060ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
3207f4259b30SLisandro Dalcin   a->barray       = NULL;
3208899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3209899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3210899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3211899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
32120ac07820SSatish Balay 
3213133cdb44SSatish Balay   /* hash table stuff */
3214f4259b30SLisandro Dalcin   a->ht           = NULL;
3215f4259b30SLisandro Dalcin   a->hd           = NULL;
3216133cdb44SSatish Balay   a->ht_size      = 0;
3217133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
321825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3219133cdb44SSatish Balay   a->ht_total_ct  = 0;
3220133cdb44SSatish Balay   a->ht_insert_ct = 0;
3221133cdb44SSatish Balay 
32229566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs,oldmat->rangebs,a->size+1));
32230ac07820SSatish Balay   if (oldmat->colmap) {
3224aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
32259566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap,&a->colmap));
322648e59246SSatish Balay #else
32279566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs,&a->colmap));
32289566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt)));
32299566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap,oldmat->colmap,a->Nbs));
323048e59246SSatish Balay #endif
3231f4259b30SLisandro Dalcin   } else a->colmap = NULL;
32324beb1cfeSHong Zhang 
32330ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
32349566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len,&a->garray));
32359566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt)));
32369566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray,oldmat->garray,len));
3237f4259b30SLisandro Dalcin   } else a->garray = NULL;
32380ac07820SSatish Balay 
32399566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash));
32409566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec,&a->lvec));
32419566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec));
32429566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx,&a->Mvctx));
32439566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx));
32447fff6886SHong Zhang 
32459566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A,cpvalues,&a->A));
32469566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A));
32479566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B,cpvalues,&a->B));
32489566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B));
32499566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist));
32500ac07820SSatish Balay   *newmat = mat;
32513a40ed3dSBarry Smith   PetscFunctionReturn(0);
32520ac07820SSatish Balay }
325357b952d6SSatish Balay 
3254618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
3255b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
3256b51a4376SLisandro Dalcin {
3257b51a4376SLisandro Dalcin   PetscInt       header[4],M,N,nz,bs,m,n,mbs,nbs,rows,cols,sum,i,j,k;
3258b51a4376SLisandro Dalcin   PetscInt       *rowidxs,*colidxs,rs,cs,ce;
3259b51a4376SLisandro Dalcin   PetscScalar    *matvals;
3260b51a4376SLisandro Dalcin 
3261b51a4376SLisandro Dalcin   PetscFunctionBegin;
32629566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3263b51a4376SLisandro Dalcin 
3264b51a4376SLisandro Dalcin   /* read in matrix header */
32659566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer,header,4,NULL,PETSC_INT));
32665f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Not a matrix object in file");
3267b51a4376SLisandro Dalcin   M  = header[1]; N = header[2]; nz = header[3];
32685f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix row size (%" PetscInt_FMT ") in file is negative",M);
32695f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Matrix column size (%" PetscInt_FMT ") in file is negative",N);
32705f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Matrix stored in special format on disk, cannot load as MPIBAIJ");
3271b51a4376SLisandro Dalcin 
3272b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
32739566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat,viewer));
3274618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3275618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3276618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3277b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3278b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3279b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32809566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32819566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3282b51a4376SLisandro Dalcin 
3283b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32849566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat,&rows,&cols));
32855f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols,PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")",M,N,rows,cols);
32869566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat,&bs));
32879566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat,&m,&n));
32889566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap,&rs,NULL));
32899566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap,&cs,&ce));
3290b51a4376SLisandro Dalcin   mbs = m/bs; nbs = n/bs;
3291b51a4376SLisandro Dalcin 
3292b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m+1,&rowidxs));
32949566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer,rowidxs+1,m,PETSC_DECIDE,M,PETSC_INT));
3295b51a4376SLisandro Dalcin   rowidxs[0] = 0; for (i=0; i<m; i++) rowidxs[i+1] += rowidxs[i];
32961c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m],&sum,1,MPIU_INT,MPI_SUM,PetscObjectComm((PetscObject)viewer)));
32975f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz,PetscObjectComm((PetscObject)viewer),PETSC_ERR_FILE_UNEXPECTED,"Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT,nz,sum);
3298b51a4376SLisandro Dalcin 
3299b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
33009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m],&colidxs,rowidxs[m],&matvals));
33019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer,colidxs,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_INT));
33029566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer,matvals,rowidxs[m],PETSC_DETERMINE,PETSC_DETERMINE,PETSC_SCALAR));
3303b51a4376SLisandro Dalcin 
3304b51a4376SLisandro Dalcin   { /* preallocate matrix storage */
3305b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3306b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3307618cc2edSLisandro Dalcin     PetscBool  sbaij,done;
3308b51a4376SLisandro Dalcin     PetscInt   *d_nnz,*o_nnz;
3309b51a4376SLisandro Dalcin 
33109566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs,&bt));
33119566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
33129566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs,&d_nnz,mbs,&o_nnz));
33139566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat,MATMPISBAIJ,&sbaij));
3314b51a4376SLisandro Dalcin     for (i=0; i<mbs; i++) {
33159566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs,bt));
33169566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3317618cc2edSLisandro Dalcin       for (k=0; k<bs; k++) {
3318618cc2edSLisandro Dalcin         PetscInt row = bs*i + k;
3319618cc2edSLisandro Dalcin         for (j=rowidxs[row]; j<rowidxs[row+1]; j++) {
3320618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3321618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3322618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3323618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt,(col-cs)/bs)) d_nnz[i]++;
3324b51a4376SLisandro Dalcin             } else {
33259566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht,col/bs,&done));
3326b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3327b51a4376SLisandro Dalcin             }
3328b51a4376SLisandro Dalcin           }
3329618cc2edSLisandro Dalcin         }
3330618cc2edSLisandro Dalcin       }
3331618cc2edSLisandro Dalcin     }
33329566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
33339566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
33349566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz));
33359566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat,bs,0,d_nnz,0,o_nnz));
33369566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz,o_nnz));
3337b51a4376SLisandro Dalcin   }
3338b51a4376SLisandro Dalcin 
3339b51a4376SLisandro Dalcin   /* store matrix values */
3340b51a4376SLisandro Dalcin   for (i=0; i<m; i++) {
3341b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i+1];
33429566063dSJacob Faibussowitsch     PetscCall((*mat->ops->setvalues)(mat,1,&row,e-s,colidxs+s,matvals+s,INSERT_VALUES));
3343b51a4376SLisandro Dalcin   }
3344b51a4376SLisandro Dalcin 
33459566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
33469566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs,matvals));
33479566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat,MAT_FINAL_ASSEMBLY));
33489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat,MAT_FINAL_ASSEMBLY));
3349b51a4376SLisandro Dalcin   PetscFunctionReturn(0);
3350b51a4376SLisandro Dalcin }
3351b51a4376SLisandro Dalcin 
3352b51a4376SLisandro Dalcin PetscErrorCode MatLoad_MPIBAIJ(Mat mat,PetscViewer viewer)
33534683f7a4SShri Abhyankar {
33547f489da9SVaclav Hapla   PetscBool isbinary;
33554683f7a4SShri Abhyankar 
33564683f7a4SShri Abhyankar   PetscFunctionBegin;
33579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary));
33585f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary,PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Viewer type %s not yet supported for reading %s matrices",((PetscObject)viewer)->type_name,((PetscObject)mat)->type_name);
33599566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat,viewer));
33604683f7a4SShri Abhyankar   PetscFunctionReturn(0);
33614683f7a4SShri Abhyankar }
33624683f7a4SShri Abhyankar 
3363133cdb44SSatish Balay /*@
3364133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3365133cdb44SSatish Balay 
3366133cdb44SSatish Balay    Input Parameters:
3367a2b725a8SWilliam Gropp +  mat  - the matrix
3368a2b725a8SWilliam Gropp -  fact - factor
3369133cdb44SSatish Balay 
3370c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3371fee21e36SBarry Smith 
33728c890885SBarry Smith    Level: advanced
33738c890885SBarry Smith 
3374133cdb44SSatish Balay   Notes:
33758c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3376133cdb44SSatish Balay 
3377db781477SPatrick Sanan .seealso: `MatSetOption()`
3378133cdb44SSatish Balay @*/
33797087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3380133cdb44SSatish Balay {
33815bf65638SKris Buschelman   PetscFunctionBegin;
3382cac4c232SBarry Smith   PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));
33835bf65638SKris Buschelman   PetscFunctionReturn(0);
33845bf65638SKris Buschelman }
33855bf65638SKris Buschelman 
33867087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
33875bf65638SKris Buschelman {
338825fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3389133cdb44SSatish Balay 
3390133cdb44SSatish Balay   PetscFunctionBegin;
3391133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3392133cdb44SSatish Balay   baij->ht_fact = fact;
3393133cdb44SSatish Balay   PetscFunctionReturn(0);
3394133cdb44SSatish Balay }
3395f2a5309cSSatish Balay 
33969230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3397f2a5309cSSatish Balay {
3398f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
3399ab4d48faSStefano Zampini   PetscBool    flg;
34005fd66863SKarl Rupp 
3401f2a5309cSSatish Balay   PetscFunctionBegin;
34029566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A,MATMPIBAIJ,&flg));
34035f80ce2aSJacob Faibussowitsch   PetscCheck(flg,PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"This function requires a MATMPIBAIJ matrix as input");
340421e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
340521e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
340621e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3407f2a5309cSSatish Balay   PetscFunctionReturn(0);
3408f2a5309cSSatish Balay }
340985535b8eSBarry Smith 
341085535b8eSBarry Smith /*
341185535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
341285535b8eSBarry Smith */
341385535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
341485535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
341585535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
341685535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
341785535b8eSBarry Smith #endif
341885535b8eSBarry Smith 
341985535b8eSBarry Smith /*@C
342085535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
342185535b8eSBarry Smith 
342285535b8eSBarry Smith   Collective on Mat
342385535b8eSBarry Smith 
342485535b8eSBarry Smith   Input Parameters:
342585535b8eSBarry Smith + mat - the matrix
342685535b8eSBarry Smith . min - number of input rows
342785535b8eSBarry Smith . im - input rows
342885535b8eSBarry Smith . nin - number of input columns
342985535b8eSBarry Smith . in - input columns
343085535b8eSBarry Smith . v - numerical values input
343185535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
343285535b8eSBarry Smith 
343395452b02SPatrick Sanan   Notes:
343495452b02SPatrick Sanan     This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
343585535b8eSBarry Smith 
343685535b8eSBarry Smith   Level: advanced
343785535b8eSBarry Smith 
3438db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()`
343985535b8eSBarry Smith @*/
344085535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
344185535b8eSBarry Smith {
344285535b8eSBarry Smith   /* convert input arguments to C version */
344385535b8eSBarry Smith   Mat        mat  = *matin;
344485535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
344585535b8eSBarry Smith   InsertMode addv = *addvin;
344685535b8eSBarry Smith 
344785535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
344885535b8eSBarry Smith   const MatScalar *value;
344985535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3450ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
345185535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
345285535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3453d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
345485535b8eSBarry Smith 
345585535b8eSBarry Smith   PetscFunctionBegin;
345685535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
345726fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
34585f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
34595f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype,PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
346085535b8eSBarry Smith   if (mat->assembled) {
346185535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
346285535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
346385535b8eSBarry Smith   }
34649566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues,mat,0,0,0));
346585535b8eSBarry Smith 
346685535b8eSBarry Smith   if (!barray) {
34679566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2,&barray));
346885535b8eSBarry Smith     baij->barray = barray;
346985535b8eSBarry Smith   }
347085535b8eSBarry Smith 
347126fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
347226fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
347326fbe8dcSKarl Rupp 
347485535b8eSBarry Smith   for (i=0; i<m; i++) {
347585535b8eSBarry Smith     if (im[i] < 0) continue;
34766bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT,im[i],baij->Mbs-1);
347785535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
347885535b8eSBarry Smith       row = im[i] - rstart;
347985535b8eSBarry Smith       for (j=0; j<n; j++) {
348085535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
348185535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
348285535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
348385535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
348485535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
348585535b8eSBarry Smith         } else { /* Here a copy is required */
348685535b8eSBarry Smith           if (roworiented) {
348785535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
348885535b8eSBarry Smith           } else {
348985535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
349085535b8eSBarry Smith           }
349185535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
349285535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
349385535b8eSBarry Smith               *barray++ = *value++;
349485535b8eSBarry Smith             }
349585535b8eSBarry Smith           }
349685535b8eSBarry Smith           barray -=bs2;
349785535b8eSBarry Smith         }
349885535b8eSBarry Smith 
349985535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
350085535b8eSBarry Smith           col  = in[j] - cstart;
35019566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]));
350226fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
35036bdcaf15SBarry Smith         else PetscCheck(in[j] < baij->Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT,in[j],baij->Nbs-1);
350485535b8eSBarry Smith         else {
350585535b8eSBarry Smith           if (mat->was_assembled) {
350685535b8eSBarry Smith             if (!baij->colmap) {
35079566063dSJacob Faibussowitsch               PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
350885535b8eSBarry Smith             }
350985535b8eSBarry Smith 
351085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
351185535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
351285535b8eSBarry Smith             { PetscInt data;
35139566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap,in[j]+1,&data));
351408401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
351585535b8eSBarry Smith             }
351685535b8eSBarry Smith #else
351708401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0,PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
351885535b8eSBarry Smith #endif
351985535b8eSBarry Smith #endif
352085535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
35219566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap,in[j]+1,&col));
352285535b8eSBarry Smith             col  = (col - 1)/bs;
352385535b8eSBarry Smith #else
352485535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
352585535b8eSBarry Smith #endif
352685535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
35279566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
352885535b8eSBarry Smith               col  =  in[j];
352985535b8eSBarry Smith             }
353026fbe8dcSKarl Rupp           } else col = in[j];
35319566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]));
353285535b8eSBarry Smith         }
353385535b8eSBarry Smith       }
353485535b8eSBarry Smith     } else {
353585535b8eSBarry Smith       if (!baij->donotstash) {
353685535b8eSBarry Smith         if (roworiented) {
35379566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
353885535b8eSBarry Smith         } else {
35399566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i));
354085535b8eSBarry Smith         }
354185535b8eSBarry Smith       }
354285535b8eSBarry Smith     }
354385535b8eSBarry Smith   }
354485535b8eSBarry Smith 
354585535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
35469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues,mat,0,0,0));
354785535b8eSBarry Smith   PetscFunctionReturn(0);
354885535b8eSBarry Smith }
3549dfb205c3SBarry Smith 
3550dfb205c3SBarry Smith /*@
3551483a2f95SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block
3552dfb205c3SBarry Smith          CSR format the local rows.
3553dfb205c3SBarry Smith 
3554d083f849SBarry Smith    Collective
3555dfb205c3SBarry Smith 
3556dfb205c3SBarry Smith    Input Parameters:
3557dfb205c3SBarry Smith +  comm - MPI communicator
3558dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3559dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3560dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3561dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3562dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3563dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3564dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3565483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3566dfb205c3SBarry Smith .   j - column indices
3567dfb205c3SBarry Smith -   a - matrix values
3568dfb205c3SBarry Smith 
3569dfb205c3SBarry Smith    Output Parameter:
3570dfb205c3SBarry Smith .   mat - the matrix
3571dfb205c3SBarry Smith 
3572dfb205c3SBarry Smith    Level: intermediate
3573dfb205c3SBarry Smith 
3574dfb205c3SBarry Smith    Notes:
3575dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3576dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3577dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3578dfb205c3SBarry Smith 
35793adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
35803adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
35813adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
35823adadaf3SJed Brown      with column-major ordering within blocks.
35833adadaf3SJed Brown 
3584dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3585dfb205c3SBarry Smith 
3586db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
3587db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3588dfb205c3SBarry Smith @*/
35897087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
3590dfb205c3SBarry Smith {
3591dfb205c3SBarry Smith   PetscFunctionBegin;
35925f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0],PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
35935f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0,PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
35949566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm,mat));
35959566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat,m,n,M,N));
35969566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat,MATMPIBAIJ));
35979566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat,bs));
35989566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35999566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE));
36009566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a));
36019566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE));
3602dfb205c3SBarry Smith   PetscFunctionReturn(0);
3603dfb205c3SBarry Smith }
3604e561ad89SHong Zhang 
3605bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
3606e561ad89SHong Zhang {
3607bd153df0SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
3608bd153df0SHong Zhang   PetscInt       *indx;
3609bd153df0SHong Zhang   PetscScalar    *values;
3610e561ad89SHong Zhang 
3611e561ad89SHong Zhang   PetscFunctionBegin;
36129566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat,&m,&N));
3613bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3614bd153df0SHong Zhang     Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inmat->data;
36152c6ba4edSHong Zhang     PetscInt       *dnz,*onz,mbs,Nbs,nbs;
3616bd153df0SHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
361777f764caSHong Zhang     PetscMPIInt    rank,size;
3618e561ad89SHong Zhang 
36199566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
3620bd153df0SHong Zhang     mbs = m/bs; Nbs = N/cbs;
3621bd153df0SHong Zhang     if (n == PETSC_DECIDE) {
36229566063dSJacob Faibussowitsch       PetscCall(PetscSplitOwnershipBlock(comm,cbs,&n,&N));
3623bd153df0SHong Zhang     }
3624da91a574SPierre Jolivet     nbs = n/cbs;
3625e561ad89SHong Zhang 
36269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax,&bindx));
3627d0609cedSBarry Smith     MatPreallocateBegin(comm,mbs,nbs,dnz,onz); /* inline function, output __end and __rstart are used below */
362877f764caSHong Zhang 
36299566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&rank));
36309566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm,&size));
363177f764caSHong Zhang     if (rank == size-1) {
363277f764caSHong Zhang       /* Check sum(nbs) = Nbs */
36335f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs,PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT,__end,Nbs);
363477f764caSHong Zhang     }
363577f764caSHong Zhang 
3636d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3637bd153df0SHong Zhang     for (i=0; i<mbs; i++) {
36389566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL)); /* non-blocked nnz and indx */
3639647a6520SHong Zhang       nnz = nnz/bs;
3640647a6520SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
36419566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz));
36429566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL));
3643e561ad89SHong Zhang     }
36449566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3645e561ad89SHong Zhang 
36469566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm,outmat));
36479566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat,m,n,PETSC_DETERMINE,PETSC_DETERMINE));
36489566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat,bs,cbs));
36499566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat,MATBAIJ));
36509566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat,bs,0,dnz));
36519566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz));
3652d0609cedSBarry Smith     MatPreallocateEnd(dnz,onz);
36539566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE));
3654e561ad89SHong Zhang   }
3655e561ad89SHong Zhang 
3656bd153df0SHong Zhang   /* numeric phase */
36579566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat,&bs,&cbs));
36589566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat,&rstart,NULL));
3659e561ad89SHong Zhang 
3660e561ad89SHong Zhang   for (i=0; i<m; i++) {
36619566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values));
3662e561ad89SHong Zhang     Ii   = i + rstart;
36639566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES));
36649566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values));
3665e561ad89SHong Zhang   }
36669566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY));
36679566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY));
3668e561ad89SHong Zhang   PetscFunctionReturn(0);
3669e561ad89SHong Zhang }
3670