179bdfe76SSatish Balay #ifndef lint 2*3369ce9aSBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.58 1997/03/13 21:03:42 balay Exp bsmith $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 5*3369ce9aSBarry Smith #include "pinclude/pviewer.h" 670f55243SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" 7c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 879bdfe76SSatish Balay 957b952d6SSatish Balay 1057b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 1157b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 12d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 13d212a18eSSatish Balay extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatGetSubMatrixCall,Mat **); 1493bc47c4SSatish Balay extern int MatLUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,Mat *); 1593bc47c4SSatish Balay extern int MatLUFactorNumeric_MPIBAIJ(Mat,Mat *); 1693bc47c4SSatish Balay extern int MatLUFactor_MPIBAIJ(Mat,IS,IS,double); 1793bc47c4SSatish Balay extern int MatSolve_MPIBAIJ(Mat,Vec,Vec); 1893bc47c4SSatish Balay extern int MatSolveAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 1993bc47c4SSatish Balay extern int MatSolveTrans_MPIBAIJ(Mat,Vec,Vec); 2093bc47c4SSatish Balay extern int MatSolveTransAdd_MPIBAIJ(Mat,Vec,Vec,Vec); 2193bc47c4SSatish Balay extern int MatILUFactorSymbolic_MPIBAIJ(Mat,IS,IS,double,int,Mat *); 2257b952d6SSatish Balay 233b2fbd54SBarry Smith 24537820f0SBarry Smith /* 25537820f0SBarry Smith Local utility routine that creates a mapping from the global column 2657b952d6SSatish Balay number to the local number in the off-diagonal part of the local 2757b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 2857b952d6SSatish Balay length of colmap equals the global matrix length. 2957b952d6SSatish Balay */ 305615d1e5SSatish Balay #undef __FUNC__ 315615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 3257b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 3357b952d6SSatish Balay { 3457b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 3557b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 36928fc39bSSatish Balay int nbs = B->nbs,i,bs=B->bs;; 3757b952d6SSatish Balay 3857b952d6SSatish Balay baij->colmap = (int *) PetscMalloc(baij->Nbs*sizeof(int));CHKPTRQ(baij->colmap); 3957b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 4057b952d6SSatish Balay PetscMemzero(baij->colmap,baij->Nbs*sizeof(int)); 41928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 4257b952d6SSatish Balay return 0; 4357b952d6SSatish Balay } 4457b952d6SSatish Balay 455615d1e5SSatish Balay #undef __FUNC__ 465615d1e5SSatish Balay #define __FUNC__ "MatGetRowIJ_MPIBAIJ(" 473b2fbd54SBarry Smith static int MatGetRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 483b2fbd54SBarry Smith PetscTruth *done) 4957b952d6SSatish Balay { 503b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 5157b952d6SSatish Balay int ierr; 523b2fbd54SBarry Smith if (aij->size == 1) { 533b2fbd54SBarry Smith ierr = MatGetRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 54e3372554SBarry Smith } else SETERRQ(1,0,"not supported in parallel"); 553b2fbd54SBarry Smith return 0; 563b2fbd54SBarry Smith } 573b2fbd54SBarry Smith 585615d1e5SSatish Balay #undef __FUNC__ 595615d1e5SSatish Balay #define __FUNC__ "MatRestoreRowIJ_MPIBAIJ" 603b2fbd54SBarry Smith static int MatRestoreRowIJ_MPIBAIJ(Mat mat,int shift,PetscTruth symmetric,int *n,int **ia,int **ja, 613b2fbd54SBarry Smith PetscTruth *done) 623b2fbd54SBarry Smith { 633b2fbd54SBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *) mat->data; 643b2fbd54SBarry Smith int ierr; 653b2fbd54SBarry Smith if (aij->size == 1) { 663b2fbd54SBarry Smith ierr = MatRestoreRowIJ(aij->A,shift,symmetric,n,ia,ja,done); CHKERRQ(ierr); 67e3372554SBarry Smith } else SETERRQ(1,0,"not supported in parallel"); 6857b952d6SSatish Balay return 0; 6957b952d6SSatish Balay } 7080c1aa95SSatish Balay #define CHUNKSIZE 10 7180c1aa95SSatish Balay 72f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 7380c1aa95SSatish Balay { \ 7480c1aa95SSatish Balay \ 7580c1aa95SSatish Balay brow = row/bs; \ 7680c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 7780c1aa95SSatish Balay rmax = imax[brow]; nrow = ailen[brow]; \ 7880c1aa95SSatish Balay bcol = col/bs; \ 7980c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 80ab26458aSBarry Smith low = 0; high = nrow; \ 81ab26458aSBarry Smith while (high-low > 3) { \ 82ab26458aSBarry Smith t = (low+high)/2; \ 83ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 84ab26458aSBarry Smith else low = t; \ 85ab26458aSBarry Smith } \ 86ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 8780c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 8880c1aa95SSatish Balay if (rp[_i] == bcol) { \ 8980c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 90eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 91eada6651SSatish Balay else *bap = value; \ 9280c1aa95SSatish Balay goto _noinsert; \ 9380c1aa95SSatish Balay } \ 9480c1aa95SSatish Balay } \ 950520107fSSatish Balay if (a->nonew) goto _noinsert; \ 9680c1aa95SSatish Balay if (nrow >= rmax) { \ 9780c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 9880c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 9980c1aa95SSatish Balay Scalar *new_a; \ 10080c1aa95SSatish Balay \ 10180c1aa95SSatish Balay /* malloc new storage space */ \ 10280c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 10380c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len ); CHKPTRQ(new_a); \ 10480c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 10580c1aa95SSatish Balay new_i = new_j + new_nz; \ 10680c1aa95SSatish Balay \ 10780c1aa95SSatish Balay /* copy over old data into new slots */ \ 10880c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 10980c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 11080c1aa95SSatish Balay PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int)); \ 11180c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 11280c1aa95SSatish Balay PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 11380c1aa95SSatish Balay len*sizeof(int)); \ 11480c1aa95SSatish Balay PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar)); \ 11580c1aa95SSatish Balay PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar)); \ 11680c1aa95SSatish Balay PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 11780c1aa95SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar)); \ 11880c1aa95SSatish Balay /* free up old matrix storage */ \ 11980c1aa95SSatish Balay PetscFree(a->a); \ 12080c1aa95SSatish Balay if (!a->singlemalloc) {PetscFree(a->i);PetscFree(a->j);} \ 12180c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 12280c1aa95SSatish Balay a->singlemalloc = 1; \ 12380c1aa95SSatish Balay \ 12480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 12580c1aa95SSatish Balay rmax = imax[brow] = imax[brow] + CHUNKSIZE; \ 12680c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 12780c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 12880c1aa95SSatish Balay a->reallocs++; \ 12980c1aa95SSatish Balay a->nz++; \ 13080c1aa95SSatish Balay } \ 13180c1aa95SSatish Balay N = nrow++ - 1; \ 13280c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13380c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 13480c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 13580c1aa95SSatish Balay PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar)); \ 13680c1aa95SSatish Balay } \ 13780c1aa95SSatish Balay if (N>=_i) PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar)); \ 13880c1aa95SSatish Balay rp[_i] = bcol; \ 13980c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 14080c1aa95SSatish Balay _noinsert:; \ 14180c1aa95SSatish Balay ailen[brow] = nrow; \ 14280c1aa95SSatish Balay } 14357b952d6SSatish Balay 144639f9d9dSBarry Smith extern int MatSetValues_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 1455615d1e5SSatish Balay #undef __FUNC__ 1465615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 147ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 14857b952d6SSatish Balay { 14957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 15057b952d6SSatish Balay Scalar value; 1514fa0d573SSatish Balay int ierr,i,j,row,col; 1524fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 1534fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 1544fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 15557b952d6SSatish Balay 156eada6651SSatish Balay /* Some Variables required in the macro */ 15780c1aa95SSatish Balay Mat A = baij->A; 15880c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 15980c1aa95SSatish Balay int *rp,ii,nrow,_i,rmax,N; 16080c1aa95SSatish Balay int *imax=a->imax,*ai=a->i,*ailen=a->ilen; 16180c1aa95SSatish Balay int *aj=a->j,brow,bcol; 162ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 16380c1aa95SSatish Balay Scalar *ap,*aa=a->a,*bap; 16480c1aa95SSatish Balay 16557b952d6SSatish Balay for ( i=0; i<m; i++ ) { 166639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 167e3372554SBarry Smith if (im[i] < 0) SETERRQ(1,0,"Negative row"); 168e3372554SBarry Smith if (im[i] >= baij->M) SETERRQ(1,0,"Row too large"); 169639f9d9dSBarry Smith #endif 17057b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 17157b952d6SSatish Balay row = im[i] - rstart_orig; 17257b952d6SSatish Balay for ( j=0; j<n; j++ ) { 17357b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 17457b952d6SSatish Balay col = in[j] - cstart_orig; 17557b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 176f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 17780c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 17857b952d6SSatish Balay } 179639f9d9dSBarry Smith #if defined(PETSC_BOPT_g) 180e3372554SBarry Smith else if (in[j] < 0) {SETERRQ(1,0,"Negative column");} 181e3372554SBarry Smith else if (in[j] >= baij->N) {SETERRQ(1,0,"Col too large");} 182639f9d9dSBarry Smith #endif 18357b952d6SSatish Balay else { 18457b952d6SSatish Balay if (mat->was_assembled) { 185905e6a2fSBarry Smith if (!baij->colmap) { 186905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 187905e6a2fSBarry Smith } 188905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 18957b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 19057b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 19157b952d6SSatish Balay col = in[j]; 19257b952d6SSatish Balay } 19357b952d6SSatish Balay } 19457b952d6SSatish Balay else col = in[j]; 19557b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 196639f9d9dSBarry Smith ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); 19757b952d6SSatish Balay } 19857b952d6SSatish Balay } 19957b952d6SSatish Balay } 20057b952d6SSatish Balay else { 20190f02eecSBarry Smith if (roworiented && !baij->donotstash) { 20257b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,im[i],n,in,v+i*n,addv);CHKERRQ(ierr); 20357b952d6SSatish Balay } 20457b952d6SSatish Balay else { 20590f02eecSBarry Smith if (!baij->donotstash) { 20657b952d6SSatish Balay row = im[i]; 20757b952d6SSatish Balay for ( j=0; j<n; j++ ) { 20857b952d6SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,in+j,v+i+j*m,addv);CHKERRQ(ierr); 20957b952d6SSatish Balay } 21057b952d6SSatish Balay } 21157b952d6SSatish Balay } 21257b952d6SSatish Balay } 21390f02eecSBarry Smith } 21457b952d6SSatish Balay return 0; 21557b952d6SSatish Balay } 21657b952d6SSatish Balay 217ab26458aSBarry Smith extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 218ab26458aSBarry Smith #undef __FUNC__ 219ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 220ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 221ab26458aSBarry Smith { 222ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 223ab26458aSBarry Smith Scalar *value,*tmp; 224abef11f7SSatish Balay int ierr,i,j,ii,jj,row,col,k,l; 225ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 226ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 227ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 228ab26458aSBarry Smith 229ab26458aSBarry Smith /* Should be stashed somewhere to avoid multiple mallocs */ 230ab26458aSBarry Smith tmp = (Scalar*) PetscMalloc(bs2*sizeof(Scalar)); CHKPTRQ(tmp); 231ab26458aSBarry Smith if (roworiented) { 232ab26458aSBarry Smith stepval = (n-1)*bs; 233ab26458aSBarry Smith } else { 234ab26458aSBarry Smith stepval = (m-1)*bs; 235ab26458aSBarry Smith } 236ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 237ab26458aSBarry Smith #if defined(PETSC_BOPT_g) 238ab26458aSBarry Smith if (im[i] < 0) SETERRQ(1,0,"Negative row"); 239ab26458aSBarry Smith if (im[i] >= baij->Mbs) SETERRQ(1,0,"Row too large"); 240ab26458aSBarry Smith #endif 241ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 242ab26458aSBarry Smith row = im[i] - rstart; 243ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 244ab26458aSBarry Smith if (roworiented) { 245ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 246ab26458aSBarry Smith } else { 247ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 248abef11f7SSatish Balay } 249ab26458aSBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) 250ab26458aSBarry Smith for (jj=0; jj<bs; jj++ ) 251ab26458aSBarry Smith *tmp++ = *value++; 252ab26458aSBarry Smith tmp -=bs2; 253abef11f7SSatish Balay 254abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 255abef11f7SSatish Balay col = in[j] - cstart; 256ab26458aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,tmp,addv);CHKERRQ(ierr); 257ab26458aSBarry Smith } 258ab26458aSBarry Smith #if defined(PETSC_BOPT_g) 259ab26458aSBarry Smith else if (in[j] < 0) {SETERRQ(1,0,"Negative column");} 260ab26458aSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ(1,0,"Col too large");} 261ab26458aSBarry Smith #endif 262ab26458aSBarry Smith else { 263ab26458aSBarry Smith if (mat->was_assembled) { 264ab26458aSBarry Smith if (!baij->colmap) { 265ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 266ab26458aSBarry Smith } 267ab26458aSBarry Smith col = baij->colmap[in[j]] - 1; 268ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 269ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 270ab26458aSBarry Smith col = in[j]; 271ab26458aSBarry Smith } 272ab26458aSBarry Smith } 273ab26458aSBarry Smith else col = in[j]; 274ab26458aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,tmp,addv);CHKERRQ(ierr); 275ab26458aSBarry Smith } 276ab26458aSBarry Smith } 277ab26458aSBarry Smith } 278ab26458aSBarry Smith else { 279ab26458aSBarry Smith if (!baij->donotstash) { 280ab26458aSBarry Smith if (roworiented ) { 281abef11f7SSatish Balay row = im[i]*bs; 282abef11f7SSatish Balay value = v + i*(stepval+bs)*bs; 283abef11f7SSatish Balay for ( j=0; j<bs; j++,row++ ) { 284abef11f7SSatish Balay for ( k=0; k<n; k++ ) { 285abef11f7SSatish Balay for ( col=in[k]*bs,l=0; l<bs; l++,col++) { 286abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 287abef11f7SSatish Balay } 288ab26458aSBarry Smith } 289ab26458aSBarry Smith } 290ab26458aSBarry Smith } 291ab26458aSBarry Smith else { 292ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 293abef11f7SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 294abef11f7SSatish Balay col = in[j]*bs; 295abef11f7SSatish Balay for ( k=0; k<bs; k++,col++,value+=stepval) { 296abef11f7SSatish Balay for ( row = im[i]*bs,l=0; l<bs; l++,row++) { 297abef11f7SSatish Balay ierr = StashValues_Private(&baij->stash,row,1,&col,value++,addv);CHKERRQ(ierr); 298ab26458aSBarry Smith } 299ab26458aSBarry Smith } 300ab26458aSBarry Smith } 301abef11f7SSatish Balay 302abef11f7SSatish Balay } 303abef11f7SSatish Balay } 304ab26458aSBarry Smith } 305ab26458aSBarry Smith } 306ab26458aSBarry Smith PetscFree(tmp); 307ab26458aSBarry Smith return 0; 308ab26458aSBarry Smith } 309ab26458aSBarry Smith 3105615d1e5SSatish Balay #undef __FUNC__ 3115615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 312ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 313d6de1c52SSatish Balay { 314d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 315d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 316d6de1c52SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col; 317d6de1c52SSatish Balay 318d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 319e3372554SBarry Smith if (idxm[i] < 0) SETERRQ(1,0,"Negative row"); 320e3372554SBarry Smith if (idxm[i] >= baij->M) SETERRQ(1,0,"Row too large"); 321d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 322d6de1c52SSatish Balay row = idxm[i] - bsrstart; 323d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 324e3372554SBarry Smith if (idxn[j] < 0) SETERRQ(1,0,"Negative column"); 325e3372554SBarry Smith if (idxn[j] >= baij->N) SETERRQ(1,0,"Col too large"); 326d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 327d6de1c52SSatish Balay col = idxn[j] - bscstart; 328d6de1c52SSatish Balay ierr = MatGetValues(baij->A,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 329d6de1c52SSatish Balay } 330d6de1c52SSatish Balay else { 331905e6a2fSBarry Smith if (!baij->colmap) { 332905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 333905e6a2fSBarry Smith } 334e60e1c95SSatish Balay if((baij->colmap[idxn[j]/bs]-1 < 0) || 335dcb20de4SSatish Balay (baij->garray[(baij->colmap[idxn[j]/bs]-1)/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 336d9d09a02SSatish Balay else { 337dcb20de4SSatish Balay col = (baij->colmap[idxn[j]/bs]-1) + idxn[j]%bs; 338d6de1c52SSatish Balay ierr = MatGetValues(baij->B,1,&row,1,&col,v+i*n+j); CHKERRQ(ierr); 339d6de1c52SSatish Balay } 340d6de1c52SSatish Balay } 341d6de1c52SSatish Balay } 342d9d09a02SSatish Balay } 343d6de1c52SSatish Balay else { 344e3372554SBarry Smith SETERRQ(1,0,"Only local values currently supported"); 345d6de1c52SSatish Balay } 346d6de1c52SSatish Balay } 347d6de1c52SSatish Balay return 0; 348d6de1c52SSatish Balay } 349d6de1c52SSatish Balay 3505615d1e5SSatish Balay #undef __FUNC__ 3515615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 352ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 353d6de1c52SSatish Balay { 354d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 355d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 356acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 357d6de1c52SSatish Balay double sum = 0.0; 358d6de1c52SSatish Balay Scalar *v; 359d6de1c52SSatish Balay 360d6de1c52SSatish Balay if (baij->size == 1) { 361d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm); CHKERRQ(ierr); 362d6de1c52SSatish Balay } else { 363d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 364d6de1c52SSatish Balay v = amat->a; 365d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 366d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 367d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 368d6de1c52SSatish Balay #else 369d6de1c52SSatish Balay sum += (*v)*(*v); v++; 370d6de1c52SSatish Balay #endif 371d6de1c52SSatish Balay } 372d6de1c52SSatish Balay v = bmat->a; 373d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 374d6de1c52SSatish Balay #if defined(PETSC_COMPLEX) 375d6de1c52SSatish Balay sum += real(conj(*v)*(*v)); v++; 376d6de1c52SSatish Balay #else 377d6de1c52SSatish Balay sum += (*v)*(*v); v++; 378d6de1c52SSatish Balay #endif 379d6de1c52SSatish Balay } 380d6de1c52SSatish Balay MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm); 381d6de1c52SSatish Balay *norm = sqrt(*norm); 382d6de1c52SSatish Balay } 383acdf5bf4SSatish Balay else 384e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 385d6de1c52SSatish Balay } 386d6de1c52SSatish Balay return 0; 387d6de1c52SSatish Balay } 38857b952d6SSatish Balay 3895615d1e5SSatish Balay #undef __FUNC__ 3905615d1e5SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 391ec1ea8d8SLois Curfman McInnes int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 39257b952d6SSatish Balay { 39357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 39457b952d6SSatish Balay MPI_Comm comm = mat->comm; 39557b952d6SSatish Balay int size = baij->size, *owners = baij->rowners,bs=baij->bs; 39657b952d6SSatish Balay int rank = baij->rank,tag = mat->tag, *owner,*starts,count,ierr; 39757b952d6SSatish Balay MPI_Request *send_waits,*recv_waits; 39857b952d6SSatish Balay int *nprocs,i,j,idx,*procs,nsends,nreceives,nmax,*work; 39957b952d6SSatish Balay InsertMode addv; 40057b952d6SSatish Balay Scalar *rvalues,*svalues; 40157b952d6SSatish Balay 40257b952d6SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 403e0fa3b82SLois Curfman McInnes MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,comm); 40457b952d6SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 405e3372554SBarry Smith SETERRQ(1,0,"Some processors inserted others added"); 40657b952d6SSatish Balay } 407e0fa3b82SLois Curfman McInnes mat->insertmode = addv; /* in case this processor had no cache */ 40857b952d6SSatish Balay 40957b952d6SSatish Balay /* first count number of contributors to each processor */ 41057b952d6SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 41157b952d6SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 41257b952d6SSatish Balay owner = (int *) PetscMalloc( (baij->stash.n+1)*sizeof(int) ); CHKPTRQ(owner); 41357b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 41457b952d6SSatish Balay idx = baij->stash.idx[i]; 41557b952d6SSatish Balay for ( j=0; j<size; j++ ) { 41657b952d6SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 41757b952d6SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; break; 41857b952d6SSatish Balay } 41957b952d6SSatish Balay } 42057b952d6SSatish Balay } 42157b952d6SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 42257b952d6SSatish Balay 42357b952d6SSatish Balay /* inform other processors of number of messages and max length*/ 42457b952d6SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 42557b952d6SSatish Balay MPI_Allreduce(procs, work,size,MPI_INT,MPI_SUM,comm); 42657b952d6SSatish Balay nreceives = work[rank]; 42757b952d6SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 42857b952d6SSatish Balay nmax = work[rank]; 42957b952d6SSatish Balay PetscFree(work); 43057b952d6SSatish Balay 43157b952d6SSatish Balay /* post receives: 43257b952d6SSatish Balay 1) each message will consist of ordered pairs 43357b952d6SSatish Balay (global index,value) we store the global index as a double 43457b952d6SSatish Balay to simplify the message passing. 43557b952d6SSatish Balay 2) since we don't know how long each individual message is we 43657b952d6SSatish Balay allocate the largest needed buffer for each receive. Potentially 43757b952d6SSatish Balay this is a lot of wasted space. 43857b952d6SSatish Balay 43957b952d6SSatish Balay 44057b952d6SSatish Balay This could be done better. 44157b952d6SSatish Balay */ 44257b952d6SSatish Balay rvalues = (Scalar *) PetscMalloc(3*(nreceives+1)*(nmax+1)*sizeof(Scalar)); 44357b952d6SSatish Balay CHKPTRQ(rvalues); 44457b952d6SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nreceives+1)*sizeof(MPI_Request)); 44557b952d6SSatish Balay CHKPTRQ(recv_waits); 44657b952d6SSatish Balay for ( i=0; i<nreceives; i++ ) { 44757b952d6SSatish Balay MPI_Irecv(rvalues+3*nmax*i,3*nmax,MPIU_SCALAR,MPI_ANY_SOURCE,tag, 44857b952d6SSatish Balay comm,recv_waits+i); 44957b952d6SSatish Balay } 45057b952d6SSatish Balay 45157b952d6SSatish Balay /* do sends: 45257b952d6SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 45357b952d6SSatish Balay the ith processor 45457b952d6SSatish Balay */ 45557b952d6SSatish Balay svalues = (Scalar *) PetscMalloc(3*(baij->stash.n+1)*sizeof(Scalar));CHKPTRQ(svalues); 45657b952d6SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 45757b952d6SSatish Balay CHKPTRQ(send_waits); 45857b952d6SSatish Balay starts = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(starts); 45957b952d6SSatish Balay starts[0] = 0; 46057b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 46157b952d6SSatish Balay for ( i=0; i<baij->stash.n; i++ ) { 46257b952d6SSatish Balay svalues[3*starts[owner[i]]] = (Scalar) baij->stash.idx[i]; 46357b952d6SSatish Balay svalues[3*starts[owner[i]]+1] = (Scalar) baij->stash.idy[i]; 46457b952d6SSatish Balay svalues[3*(starts[owner[i]]++)+2] = baij->stash.array[i]; 46557b952d6SSatish Balay } 46657b952d6SSatish Balay PetscFree(owner); 46757b952d6SSatish Balay starts[0] = 0; 46857b952d6SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 46957b952d6SSatish Balay count = 0; 47057b952d6SSatish Balay for ( i=0; i<size; i++ ) { 47157b952d6SSatish Balay if (procs[i]) { 47257b952d6SSatish Balay MPI_Isend(svalues+3*starts[i],3*nprocs[i],MPIU_SCALAR,i,tag, 47357b952d6SSatish Balay comm,send_waits+count++); 47457b952d6SSatish Balay } 47557b952d6SSatish Balay } 47657b952d6SSatish Balay PetscFree(starts); PetscFree(nprocs); 47757b952d6SSatish Balay 47857b952d6SSatish Balay /* Free cache space */ 479d2dc9b81SLois Curfman McInnes PLogInfo(mat,"MatAssemblyBegin_MPIBAIJ:Number of off-processor values %d\n",baij->stash.n); 48057b952d6SSatish Balay ierr = StashDestroy_Private(&baij->stash); CHKERRQ(ierr); 48157b952d6SSatish Balay 48257b952d6SSatish Balay baij->svalues = svalues; baij->rvalues = rvalues; 48357b952d6SSatish Balay baij->nsends = nsends; baij->nrecvs = nreceives; 48457b952d6SSatish Balay baij->send_waits = send_waits; baij->recv_waits = recv_waits; 48557b952d6SSatish Balay baij->rmax = nmax; 48657b952d6SSatish Balay 48757b952d6SSatish Balay return 0; 48857b952d6SSatish Balay } 48957b952d6SSatish Balay 49057b952d6SSatish Balay 4915615d1e5SSatish Balay #undef __FUNC__ 4925615d1e5SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 493ec1ea8d8SLois Curfman McInnes int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 49457b952d6SSatish Balay { 49557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 49657b952d6SSatish Balay MPI_Status *send_status,recv_status; 49757b952d6SSatish Balay int imdex,nrecvs = baij->nrecvs, count = nrecvs, i, n, ierr; 49857b952d6SSatish Balay int bs=baij->bs,row,col,other_disassembled; 49957b952d6SSatish Balay Scalar *values,val; 500e0fa3b82SLois Curfman McInnes InsertMode addv = mat->insertmode; 50157b952d6SSatish Balay 50257b952d6SSatish Balay /* wait on receives */ 50357b952d6SSatish Balay while (count) { 50457b952d6SSatish Balay MPI_Waitany(nrecvs,baij->recv_waits,&imdex,&recv_status); 50557b952d6SSatish Balay /* unpack receives into our local space */ 50657b952d6SSatish Balay values = baij->rvalues + 3*imdex*baij->rmax; 50757b952d6SSatish Balay MPI_Get_count(&recv_status,MPIU_SCALAR,&n); 50857b952d6SSatish Balay n = n/3; 50957b952d6SSatish Balay for ( i=0; i<n; i++ ) { 51057b952d6SSatish Balay row = (int) PetscReal(values[3*i]) - baij->rstart*bs; 51157b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 51257b952d6SSatish Balay val = values[3*i+2]; 51357b952d6SSatish Balay if (col >= baij->cstart*bs && col < baij->cend*bs) { 51457b952d6SSatish Balay col -= baij->cstart*bs; 51557b952d6SSatish Balay MatSetValues(baij->A,1,&row,1,&col,&val,addv); 51657b952d6SSatish Balay } 51757b952d6SSatish Balay else { 51857b952d6SSatish Balay if (mat->was_assembled) { 519905e6a2fSBarry Smith if (!baij->colmap) { 520905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat); CHKERRQ(ierr); 521905e6a2fSBarry Smith } 522905e6a2fSBarry Smith col = (baij->colmap[col/bs]-1)*bs + col%bs; 52357b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 52457b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 52557b952d6SSatish Balay col = (int) PetscReal(values[3*i+1]); 52657b952d6SSatish Balay } 52757b952d6SSatish Balay } 52857b952d6SSatish Balay MatSetValues(baij->B,1,&row,1,&col,&val,addv); 52957b952d6SSatish Balay } 53057b952d6SSatish Balay } 53157b952d6SSatish Balay count--; 53257b952d6SSatish Balay } 53357b952d6SSatish Balay PetscFree(baij->recv_waits); PetscFree(baij->rvalues); 53457b952d6SSatish Balay 53557b952d6SSatish Balay /* wait on sends */ 53657b952d6SSatish Balay if (baij->nsends) { 53757b952d6SSatish Balay send_status = (MPI_Status *) PetscMalloc(baij->nsends*sizeof(MPI_Status)); 53857b952d6SSatish Balay CHKPTRQ(send_status); 53957b952d6SSatish Balay MPI_Waitall(baij->nsends,baij->send_waits,send_status); 54057b952d6SSatish Balay PetscFree(send_status); 54157b952d6SSatish Balay } 54257b952d6SSatish Balay PetscFree(baij->send_waits); PetscFree(baij->svalues); 54357b952d6SSatish Balay 54457b952d6SSatish Balay ierr = MatAssemblyBegin(baij->A,mode); CHKERRQ(ierr); 54557b952d6SSatish Balay ierr = MatAssemblyEnd(baij->A,mode); CHKERRQ(ierr); 54657b952d6SSatish Balay 54757b952d6SSatish Balay /* determine if any processor has disassembled, if so we must 54857b952d6SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 54957b952d6SSatish Balay MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm); 55057b952d6SSatish Balay if (mat->was_assembled && !other_disassembled) { 55157b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat); CHKERRQ(ierr); 55257b952d6SSatish Balay } 55357b952d6SSatish Balay 5546d4a8577SBarry Smith if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 55557b952d6SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat); CHKERRQ(ierr); 55657b952d6SSatish Balay } 55757b952d6SSatish Balay ierr = MatAssemblyBegin(baij->B,mode); CHKERRQ(ierr); 55857b952d6SSatish Balay ierr = MatAssemblyEnd(baij->B,mode); CHKERRQ(ierr); 55957b952d6SSatish Balay 56057b952d6SSatish Balay if (baij->rowvalues) {PetscFree(baij->rowvalues); baij->rowvalues = 0;} 56157b952d6SSatish Balay return 0; 56257b952d6SSatish Balay } 56357b952d6SSatish Balay 5645615d1e5SSatish Balay #undef __FUNC__ 5655615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 56657b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 56757b952d6SSatish Balay { 56857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 56957b952d6SSatish Balay int ierr; 57057b952d6SSatish Balay 57157b952d6SSatish Balay if (baij->size == 1) { 57257b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 57357b952d6SSatish Balay } 574e3372554SBarry Smith else SETERRQ(1,0,"Only uniprocessor output supported"); 57557b952d6SSatish Balay return 0; 57657b952d6SSatish Balay } 57757b952d6SSatish Balay 5785615d1e5SSatish Balay #undef __FUNC__ 5795615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworMatlab" 58057b952d6SSatish Balay static int MatView_MPIBAIJ_ASCIIorDraworMatlab(Mat mat,Viewer viewer) 58157b952d6SSatish Balay { 58257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 583cee3aa6bSSatish Balay int ierr, format,rank,bs = baij->bs; 58457b952d6SSatish Balay FILE *fd; 58557b952d6SSatish Balay ViewerType vtype; 58657b952d6SSatish Balay 58757b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 58857b952d6SSatish Balay if (vtype == ASCII_FILES_VIEWER || vtype == ASCII_FILE_VIEWER) { 58957b952d6SSatish Balay ierr = ViewerGetFormat(viewer,&format); 590639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 5914e220ebcSLois Curfman McInnes MatInfo info; 59257b952d6SSatish Balay MPI_Comm_rank(mat->comm,&rank); 59357b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 5944e220ebcSLois Curfman McInnes ierr = MatGetInfo(mat,MAT_LOCAL,&info); 59557b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 59657b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 5974e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 5984e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 5994e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->A,MAT_LOCAL,&info); 6004e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 6014e220ebcSLois Curfman McInnes ierr = MatGetInfo(baij->B,MAT_LOCAL,&info); 6024e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 60357b952d6SSatish Balay fflush(fd); 60457b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 60557b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer); CHKERRQ(ierr); 60657b952d6SSatish Balay return 0; 60757b952d6SSatish Balay } 608639f9d9dSBarry Smith else if (format == VIEWER_FORMAT_ASCII_INFO) { 609bcc3fcf6SBarry Smith PetscPrintf(mat->comm," block size is %d\n",bs); 61057b952d6SSatish Balay return 0; 61157b952d6SSatish Balay } 61257b952d6SSatish Balay } 61357b952d6SSatish Balay 61457b952d6SSatish Balay if (vtype == DRAW_VIEWER) { 61557b952d6SSatish Balay Draw draw; 61657b952d6SSatish Balay PetscTruth isnull; 61757b952d6SSatish Balay ierr = ViewerDrawGetDraw(viewer,&draw); CHKERRQ(ierr); 61857b952d6SSatish Balay ierr = DrawIsNull(draw,&isnull); CHKERRQ(ierr); if (isnull) return 0; 61957b952d6SSatish Balay } 62057b952d6SSatish Balay 62157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER) { 62257b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd); CHKERRQ(ierr); 62357b952d6SSatish Balay PetscSequentialPhaseBegin(mat->comm,1); 62457b952d6SSatish Balay fprintf(fd,"[%d] rows %d starts %d ends %d cols %d starts %d ends %d\n", 62557b952d6SSatish Balay baij->rank,baij->m,baij->rstart*bs,baij->rend*bs,baij->n, 62657b952d6SSatish Balay baij->cstart*bs,baij->cend*bs); 62757b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 62857b952d6SSatish Balay ierr = MatView(baij->B,viewer); CHKERRQ(ierr); 62957b952d6SSatish Balay fflush(fd); 63057b952d6SSatish Balay PetscSequentialPhaseEnd(mat->comm,1); 63157b952d6SSatish Balay } 63257b952d6SSatish Balay else { 63357b952d6SSatish Balay int size = baij->size; 63457b952d6SSatish Balay rank = baij->rank; 63557b952d6SSatish Balay if (size == 1) { 63657b952d6SSatish Balay ierr = MatView(baij->A,viewer); CHKERRQ(ierr); 63757b952d6SSatish Balay } 63857b952d6SSatish Balay else { 63957b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 64057b952d6SSatish Balay Mat A; 64157b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 64257b952d6SSatish Balay int M = baij->M, N = baij->N,*ai,*aj,row,col,i,j,k,*rvals; 64357b952d6SSatish Balay int mbs=baij->mbs; 64457b952d6SSatish Balay Scalar *a; 64557b952d6SSatish Balay 64657b952d6SSatish Balay if (!rank) { 647cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 64857b952d6SSatish Balay CHKERRQ(ierr); 64957b952d6SSatish Balay } 65057b952d6SSatish Balay else { 651cee3aa6bSSatish Balay ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A); 65257b952d6SSatish Balay CHKERRQ(ierr); 65357b952d6SSatish Balay } 65457b952d6SSatish Balay PLogObjectParent(mat,A); 65557b952d6SSatish Balay 65657b952d6SSatish Balay /* copy over the A part */ 65757b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 65857b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 65957b952d6SSatish Balay row = baij->rstart; 66057b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 66157b952d6SSatish Balay 66257b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 66357b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 66457b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 66557b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 66657b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 66757b952d6SSatish Balay for (k=0; k<bs; k++ ) { 668cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 669cee3aa6bSSatish Balay col++; a += bs; 67057b952d6SSatish Balay } 67157b952d6SSatish Balay } 67257b952d6SSatish Balay } 67357b952d6SSatish Balay /* copy over the B part */ 67457b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 67557b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 67657b952d6SSatish Balay row = baij->rstart*bs; 67757b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 67857b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 67957b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 68057b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 68157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 68257b952d6SSatish Balay for (k=0; k<bs; k++ ) { 683cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 684cee3aa6bSSatish Balay col++; a += bs; 68557b952d6SSatish Balay } 68657b952d6SSatish Balay } 68757b952d6SSatish Balay } 68857b952d6SSatish Balay PetscFree(rvals); 6896d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 6906d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 69157b952d6SSatish Balay if (!rank) { 69257b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer); CHKERRQ(ierr); 69357b952d6SSatish Balay } 69457b952d6SSatish Balay ierr = MatDestroy(A); CHKERRQ(ierr); 69557b952d6SSatish Balay } 69657b952d6SSatish Balay } 69757b952d6SSatish Balay return 0; 69857b952d6SSatish Balay } 69957b952d6SSatish Balay 70057b952d6SSatish Balay 70157b952d6SSatish Balay 7025615d1e5SSatish Balay #undef __FUNC__ 7035615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 704ec1ea8d8SLois Curfman McInnes int MatView_MPIBAIJ(PetscObject obj,Viewer viewer) 70557b952d6SSatish Balay { 70657b952d6SSatish Balay Mat mat = (Mat) obj; 70757b952d6SSatish Balay int ierr; 70857b952d6SSatish Balay ViewerType vtype; 70957b952d6SSatish Balay 71057b952d6SSatish Balay ierr = ViewerGetType(viewer,&vtype); CHKERRQ(ierr); 71157b952d6SSatish Balay if (vtype == ASCII_FILE_VIEWER || vtype == ASCII_FILES_VIEWER || 71257b952d6SSatish Balay vtype == DRAW_VIEWER || vtype == MATLAB_VIEWER) { 71357b952d6SSatish Balay ierr = MatView_MPIBAIJ_ASCIIorDraworMatlab(mat,viewer); CHKERRQ(ierr); 71457b952d6SSatish Balay } 71557b952d6SSatish Balay else if (vtype == BINARY_FILE_VIEWER) { 71657b952d6SSatish Balay return MatView_MPIBAIJ_Binary(mat,viewer); 71757b952d6SSatish Balay } 71857b952d6SSatish Balay return 0; 71957b952d6SSatish Balay } 72057b952d6SSatish Balay 7215615d1e5SSatish Balay #undef __FUNC__ 7225615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 723ec1ea8d8SLois Curfman McInnes int MatDestroy_MPIBAIJ(PetscObject obj) 72479bdfe76SSatish Balay { 72579bdfe76SSatish Balay Mat mat = (Mat) obj; 72679bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 72779bdfe76SSatish Balay int ierr; 72879bdfe76SSatish Balay 72979bdfe76SSatish Balay #if defined(PETSC_LOG) 73079bdfe76SSatish Balay PLogObjectState(obj,"Rows=%d, Cols=%d",baij->M,baij->N); 73179bdfe76SSatish Balay #endif 73279bdfe76SSatish Balay 73379bdfe76SSatish Balay PetscFree(baij->rowners); 73479bdfe76SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 73579bdfe76SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 73679bdfe76SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 73779bdfe76SSatish Balay if (baij->garray) PetscFree(baij->garray); 73879bdfe76SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 73979bdfe76SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 74079bdfe76SSatish Balay if (baij->rowvalues) PetscFree(baij->rowvalues); 74179bdfe76SSatish Balay PetscFree(baij); 74290f02eecSBarry Smith if (mat->mapping) { 74390f02eecSBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping); CHKERRQ(ierr); 74490f02eecSBarry Smith } 74579bdfe76SSatish Balay PLogObjectDestroy(mat); 74679bdfe76SSatish Balay PetscHeaderDestroy(mat); 74779bdfe76SSatish Balay return 0; 74879bdfe76SSatish Balay } 74979bdfe76SSatish Balay 7505615d1e5SSatish Balay #undef __FUNC__ 7515615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 752ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 753cee3aa6bSSatish Balay { 754cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 75547b4a8eaSLois Curfman McInnes int ierr, nt; 756cee3aa6bSSatish Balay 757c16cb8f2SBarry Smith VecGetLocalSize_Fast(xx,nt); 75847b4a8eaSLois Curfman McInnes if (nt != a->n) { 759ab26458aSBarry Smith SETERRQ(1,0,"Incompatible partition of A and xx"); 76047b4a8eaSLois Curfman McInnes } 761c16cb8f2SBarry Smith VecGetLocalSize_Fast(yy,nt); 76247b4a8eaSLois Curfman McInnes if (nt != a->m) { 763e3372554SBarry Smith SETERRQ(1,0,"Incompatible parition of A and yy"); 76447b4a8eaSLois Curfman McInnes } 76543a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 766cee3aa6bSSatish Balay ierr = (*a->A->ops.mult)(a->A,xx,yy); CHKERRQ(ierr); 76743a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 768cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,yy,yy); CHKERRQ(ierr); 76943a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 770cee3aa6bSSatish Balay return 0; 771cee3aa6bSSatish Balay } 772cee3aa6bSSatish Balay 7735615d1e5SSatish Balay #undef __FUNC__ 7745615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 775ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 776cee3aa6bSSatish Balay { 777cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 778cee3aa6bSSatish Balay int ierr; 77943a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 780cee3aa6bSSatish Balay ierr = (*a->A->ops.multadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 78143a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 782cee3aa6bSSatish Balay ierr = (*a->B->ops.multadd)(a->B,a->lvec,zz,zz); CHKERRQ(ierr); 783cee3aa6bSSatish Balay return 0; 784cee3aa6bSSatish Balay } 785cee3aa6bSSatish Balay 7865615d1e5SSatish Balay #undef __FUNC__ 7875615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 788ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 789cee3aa6bSSatish Balay { 790cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 791cee3aa6bSSatish Balay int ierr; 792cee3aa6bSSatish Balay 793cee3aa6bSSatish Balay /* do nondiagonal part */ 794cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 795cee3aa6bSSatish Balay /* send it on its way */ 796537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 797cee3aa6bSSatish Balay /* do local part */ 798cee3aa6bSSatish Balay ierr = (*a->A->ops.multtrans)(a->A,xx,yy); CHKERRQ(ierr); 799cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 800cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 801cee3aa6bSSatish Balay /* but is not perhaps always true. */ 802639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 803cee3aa6bSSatish Balay return 0; 804cee3aa6bSSatish Balay } 805cee3aa6bSSatish Balay 8065615d1e5SSatish Balay #undef __FUNC__ 8075615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 808ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 809cee3aa6bSSatish Balay { 810cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 811cee3aa6bSSatish Balay int ierr; 812cee3aa6bSSatish Balay 813cee3aa6bSSatish Balay /* do nondiagonal part */ 814cee3aa6bSSatish Balay ierr = (*a->B->ops.multtrans)(a->B,xx,a->lvec); CHKERRQ(ierr); 815cee3aa6bSSatish Balay /* send it on its way */ 816537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 817cee3aa6bSSatish Balay /* do local part */ 818cee3aa6bSSatish Balay ierr = (*a->A->ops.multtransadd)(a->A,xx,yy,zz); CHKERRQ(ierr); 819cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 820cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 821cee3aa6bSSatish Balay /* but is not perhaps always true. */ 822537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx); CHKERRQ(ierr); 823cee3aa6bSSatish Balay return 0; 824cee3aa6bSSatish Balay } 825cee3aa6bSSatish Balay 826cee3aa6bSSatish Balay /* 827cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 828cee3aa6bSSatish Balay diagonal block 829cee3aa6bSSatish Balay */ 8305615d1e5SSatish Balay #undef __FUNC__ 8315615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 832ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 833cee3aa6bSSatish Balay { 834cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 835cee3aa6bSSatish Balay if (a->M != a->N) 836e3372554SBarry Smith SETERRQ(1,0,"Supports only square matrix where A->A is diag block"); 837cee3aa6bSSatish Balay return MatGetDiagonal(a->A,v); 838cee3aa6bSSatish Balay } 839cee3aa6bSSatish Balay 8405615d1e5SSatish Balay #undef __FUNC__ 8415615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 842ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 843cee3aa6bSSatish Balay { 844cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 845cee3aa6bSSatish Balay int ierr; 846cee3aa6bSSatish Balay ierr = MatScale(aa,a->A); CHKERRQ(ierr); 847cee3aa6bSSatish Balay ierr = MatScale(aa,a->B); CHKERRQ(ierr); 848cee3aa6bSSatish Balay return 0; 849cee3aa6bSSatish Balay } 850026e39d0SSatish Balay 8515615d1e5SSatish Balay #undef __FUNC__ 8525615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 853ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 85457b952d6SSatish Balay { 85557b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 85657b952d6SSatish Balay *m = mat->M; *n = mat->N; 85757b952d6SSatish Balay return 0; 85857b952d6SSatish Balay } 85957b952d6SSatish Balay 8605615d1e5SSatish Balay #undef __FUNC__ 8615615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 862ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 86357b952d6SSatish Balay { 86457b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 86557b952d6SSatish Balay *m = mat->m; *n = mat->N; 86657b952d6SSatish Balay return 0; 86757b952d6SSatish Balay } 86857b952d6SSatish Balay 8695615d1e5SSatish Balay #undef __FUNC__ 8705615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 871ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 87257b952d6SSatish Balay { 87357b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 87457b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 87557b952d6SSatish Balay return 0; 87657b952d6SSatish Balay } 87757b952d6SSatish Balay 878acdf5bf4SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 879acdf5bf4SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 880acdf5bf4SSatish Balay 8815615d1e5SSatish Balay #undef __FUNC__ 8825615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 883acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 884acdf5bf4SSatish Balay { 885acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 886acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 887acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 888d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 889d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 890acdf5bf4SSatish Balay 891e3372554SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(1,0,"Already active"); 892acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 893acdf5bf4SSatish Balay 894acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 895acdf5bf4SSatish Balay /* 896acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 897acdf5bf4SSatish Balay */ 898acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 899bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 900bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 901acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 902acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 903acdf5bf4SSatish Balay } 904acdf5bf4SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar))); 905acdf5bf4SSatish Balay CHKPTRQ(mat->rowvalues); 906acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 907acdf5bf4SSatish Balay } 908acdf5bf4SSatish Balay 909acdf5bf4SSatish Balay 910e3372554SBarry Smith if (row < brstart || row >= brend) SETERRQ(1,0,"Only local rows") 911d9d09a02SSatish Balay lrow = row - brstart; 912acdf5bf4SSatish Balay 913acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 914acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 915acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 916acdf5bf4SSatish Balay ierr = (*mat->A->ops.getrow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 917acdf5bf4SSatish Balay ierr = (*mat->B->ops.getrow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 918acdf5bf4SSatish Balay nztot = nzA + nzB; 919acdf5bf4SSatish Balay 920acdf5bf4SSatish Balay cmap = mat->garray; 921acdf5bf4SSatish Balay if (v || idx) { 922acdf5bf4SSatish Balay if (nztot) { 923acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 924acdf5bf4SSatish Balay int imark = -1; 925acdf5bf4SSatish Balay if (v) { 926acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 927acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 928d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 929acdf5bf4SSatish Balay else break; 930acdf5bf4SSatish Balay } 931acdf5bf4SSatish Balay imark = i; 932acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 933acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 934acdf5bf4SSatish Balay } 935acdf5bf4SSatish Balay if (idx) { 936acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 937acdf5bf4SSatish Balay if (imark > -1) { 938acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 939bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 940acdf5bf4SSatish Balay } 941acdf5bf4SSatish Balay } else { 942acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 943d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 944d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 945acdf5bf4SSatish Balay else break; 946acdf5bf4SSatish Balay } 947acdf5bf4SSatish Balay imark = i; 948acdf5bf4SSatish Balay } 949d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 950d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 951acdf5bf4SSatish Balay } 952acdf5bf4SSatish Balay } 953d212a18eSSatish Balay else { 954d212a18eSSatish Balay if (idx) *idx = 0; 955d212a18eSSatish Balay if (v) *v = 0; 956d212a18eSSatish Balay } 957acdf5bf4SSatish Balay } 958acdf5bf4SSatish Balay *nz = nztot; 959acdf5bf4SSatish Balay ierr = (*mat->A->ops.restorerow)(mat->A,lrow,&nzA,pcA,pvA); CHKERRQ(ierr); 960acdf5bf4SSatish Balay ierr = (*mat->B->ops.restorerow)(mat->B,lrow,&nzB,pcB,pvB); CHKERRQ(ierr); 961acdf5bf4SSatish Balay return 0; 962acdf5bf4SSatish Balay } 963acdf5bf4SSatish Balay 9645615d1e5SSatish Balay #undef __FUNC__ 9655615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 966acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 967acdf5bf4SSatish Balay { 968acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 969acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 970e3372554SBarry Smith SETERRQ(1,0,"MatGetRow not called"); 971acdf5bf4SSatish Balay } 972acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 973acdf5bf4SSatish Balay return 0; 974acdf5bf4SSatish Balay } 975acdf5bf4SSatish Balay 9765615d1e5SSatish Balay #undef __FUNC__ 9775615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 978ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 9795a838052SSatish Balay { 9805a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 9815a838052SSatish Balay *bs = baij->bs; 9825a838052SSatish Balay return 0; 9835a838052SSatish Balay } 9845a838052SSatish Balay 9855615d1e5SSatish Balay #undef __FUNC__ 9865615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 987ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 98858667388SSatish Balay { 98958667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 99058667388SSatish Balay int ierr; 99158667388SSatish Balay ierr = MatZeroEntries(l->A); CHKERRQ(ierr); 99258667388SSatish Balay ierr = MatZeroEntries(l->B); CHKERRQ(ierr); 99358667388SSatish Balay return 0; 99458667388SSatish Balay } 9950ac07820SSatish Balay 9965615d1e5SSatish Balay #undef __FUNC__ 9975615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 998ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 9990ac07820SSatish Balay { 10004e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 10014e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 10027d57db60SLois Curfman McInnes int ierr; 10037d57db60SLois Curfman McInnes double isend[5], irecv[5]; 10040ac07820SSatish Balay 10054e220ebcSLois Curfman McInnes info->rows_global = (double)a->M; 10064e220ebcSLois Curfman McInnes info->columns_global = (double)a->N; 10074e220ebcSLois Curfman McInnes info->rows_local = (double)a->m; 10084e220ebcSLois Curfman McInnes info->columns_local = (double)a->N; 10094e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 10104e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info); CHKERRQ(ierr); 10114e220ebcSLois Curfman McInnes isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->memory; 10124e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info); CHKERRQ(ierr); 10134e220ebcSLois Curfman McInnes isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->memory; 10140ac07820SSatish Balay if (flag == MAT_LOCAL) { 10154e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 10164e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 10174e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 10184e220ebcSLois Curfman McInnes info->memory = isend[3]; 10194e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 10200ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1021dd2c0978SLois Curfman McInnes MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_MAX,matin->comm); 10224e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10234e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10244e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10254e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10264e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 10270ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1028dd2c0978SLois Curfman McInnes MPI_Allreduce(isend,irecv,5,MPI_INT,MPI_SUM,matin->comm); 10294e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 10304e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 10314e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 10324e220ebcSLois Curfman McInnes info->memory = irecv[3]; 10334e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 10340ac07820SSatish Balay } 10354e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 10364e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 10374e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 10380ac07820SSatish Balay return 0; 10390ac07820SSatish Balay } 10400ac07820SSatish Balay 10415615d1e5SSatish Balay #undef __FUNC__ 10425615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 1043ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 104458667388SSatish Balay { 104558667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 104658667388SSatish Balay 104758667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 104858667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 10496da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1050c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 1051c2653b3dSLois Curfman McInnes op == MAT_NEW_NONZERO_LOCATION_ERROR) { 1052b1fbbac0SLois Curfman McInnes MatSetOption(a->A,op); 1053b1fbbac0SLois Curfman McInnes MatSetOption(a->B,op); 1054b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1055aeafbbfcSLois Curfman McInnes a->roworiented = 1; 105658667388SSatish Balay MatSetOption(a->A,op); 105758667388SSatish Balay MatSetOption(a->B,op); 1058b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 10596da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 106058667388SSatish Balay op == MAT_SYMMETRIC || 106158667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 106258667388SSatish Balay op == MAT_YES_NEW_DIAGONALS) 106358667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 106458667388SSatish Balay else if (op == MAT_COLUMN_ORIENTED) { 106558667388SSatish Balay a->roworiented = 0; 106658667388SSatish Balay MatSetOption(a->A,op); 106758667388SSatish Balay MatSetOption(a->B,op); 106890f02eecSBarry Smith } else if (op == MAT_IGNORE_OFF_PROCESSOR_ENTRIES) { 106990f02eecSBarry Smith a->donotstash = 1; 107090f02eecSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) 1071e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");} 107258667388SSatish Balay else 1073e3372554SBarry Smith {SETERRQ(PETSC_ERR_SUP,0,"unknown option");} 107458667388SSatish Balay return 0; 107558667388SSatish Balay } 107658667388SSatish Balay 10775615d1e5SSatish Balay #undef __FUNC__ 10785615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 1079ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 10800ac07820SSatish Balay { 10810ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 10820ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 10830ac07820SSatish Balay Mat B; 10840ac07820SSatish Balay int ierr,M=baij->M,N=baij->N,*ai,*aj,row,i,*rvals,j,k,col; 10850ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 10860ac07820SSatish Balay Scalar *a; 10870ac07820SSatish Balay 10880ac07820SSatish Balay if (matout == PETSC_NULL && M != N) 1089e3372554SBarry Smith SETERRQ(1,0,"Square matrix only for in-place"); 10900ac07820SSatish Balay ierr = MatCreateMPIBAIJ(A->comm,baij->bs,PETSC_DECIDE,PETSC_DECIDE,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 10910ac07820SSatish Balay CHKERRQ(ierr); 10920ac07820SSatish Balay 10930ac07820SSatish Balay /* copy over the A part */ 10940ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 10950ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 10960ac07820SSatish Balay row = baij->rstart; 10970ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int)); CHKPTRQ(rvals); 10980ac07820SSatish Balay 10990ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 11000ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 11010ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 11020ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 11030ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 11040ac07820SSatish Balay for (k=0; k<bs; k++ ) { 11050ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 11060ac07820SSatish Balay col++; a += bs; 11070ac07820SSatish Balay } 11080ac07820SSatish Balay } 11090ac07820SSatish Balay } 11100ac07820SSatish Balay /* copy over the B part */ 11110ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 11120ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 11130ac07820SSatish Balay row = baij->rstart*bs; 11140ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 11150ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 11160ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 11170ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 11180ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 11190ac07820SSatish Balay for (k=0; k<bs; k++ ) { 11200ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 11210ac07820SSatish Balay col++; a += bs; 11220ac07820SSatish Balay } 11230ac07820SSatish Balay } 11240ac07820SSatish Balay } 11250ac07820SSatish Balay PetscFree(rvals); 11260ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 11270ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 11280ac07820SSatish Balay 11290ac07820SSatish Balay if (matout != PETSC_NULL) { 11300ac07820SSatish Balay *matout = B; 11310ac07820SSatish Balay } else { 11320ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 11330ac07820SSatish Balay PetscFree(baij->rowners); 11340ac07820SSatish Balay ierr = MatDestroy(baij->A); CHKERRQ(ierr); 11350ac07820SSatish Balay ierr = MatDestroy(baij->B); CHKERRQ(ierr); 11360ac07820SSatish Balay if (baij->colmap) PetscFree(baij->colmap); 11370ac07820SSatish Balay if (baij->garray) PetscFree(baij->garray); 11380ac07820SSatish Balay if (baij->lvec) VecDestroy(baij->lvec); 11390ac07820SSatish Balay if (baij->Mvctx) VecScatterDestroy(baij->Mvctx); 11400ac07820SSatish Balay PetscFree(baij); 11410ac07820SSatish Balay PetscMemcpy(A,B,sizeof(struct _Mat)); 11420ac07820SSatish Balay PetscHeaderDestroy(B); 11430ac07820SSatish Balay } 11440ac07820SSatish Balay return 0; 11450ac07820SSatish Balay } 11460e95ebc0SSatish Balay 11475615d1e5SSatish Balay #undef __FUNC__ 11485615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 11490e95ebc0SSatish Balay int MatDiagonalScale_MPIBAIJ(Mat A,Vec ll,Vec rr) 11500e95ebc0SSatish Balay { 11510e95ebc0SSatish Balay Mat a = ((Mat_MPIBAIJ *) A->data)->A; 11520e95ebc0SSatish Balay Mat b = ((Mat_MPIBAIJ *) A->data)->B; 11530e95ebc0SSatish Balay int ierr,s1,s2,s3; 11540e95ebc0SSatish Balay 11550e95ebc0SSatish Balay if (ll) { 11560e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1); CHKERRQ(ierr); 11570e95ebc0SSatish Balay ierr = MatGetLocalSize(A,&s2,&s3); CHKERRQ(ierr); 1158e3372554SBarry Smith if (s1!=s2) SETERRQ(1,0,"non-conforming local sizes"); 11590e95ebc0SSatish Balay ierr = MatDiagonalScale(a,ll,0); CHKERRQ(ierr); 11600e95ebc0SSatish Balay ierr = MatDiagonalScale(b,ll,0); CHKERRQ(ierr); 11610e95ebc0SSatish Balay } 1162e3372554SBarry Smith if (rr) SETERRQ(1,0,"not supported for right vector"); 11630e95ebc0SSatish Balay return 0; 11640e95ebc0SSatish Balay } 11650e95ebc0SSatish Balay 11660ac07820SSatish Balay /* the code does not do the diagonal entries correctly unless the 11670ac07820SSatish Balay matrix is square and the column and row owerships are identical. 11680ac07820SSatish Balay This is a BUG. The only way to fix it seems to be to access 11690ac07820SSatish Balay baij->A and baij->B directly and not through the MatZeroRows() 11700ac07820SSatish Balay routine. 11710ac07820SSatish Balay */ 11725615d1e5SSatish Balay #undef __FUNC__ 11735615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 1174ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 11750ac07820SSatish Balay { 11760ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 11770ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 11780ac07820SSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work; 11790ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 11800ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 11810ac07820SSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs; 11820ac07820SSatish Balay MPI_Comm comm = A->comm; 11830ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 11840ac07820SSatish Balay MPI_Status recv_status,*send_status; 11850ac07820SSatish Balay IS istmp; 11860ac07820SSatish Balay 11870ac07820SSatish Balay ierr = ISGetSize(is,&N); CHKERRQ(ierr); 11880ac07820SSatish Balay ierr = ISGetIndices(is,&rows); CHKERRQ(ierr); 11890ac07820SSatish Balay 11900ac07820SSatish Balay /* first count number of contributors to each processor */ 11910ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) ); CHKPTRQ(nprocs); 11920ac07820SSatish Balay PetscMemzero(nprocs,2*size*sizeof(int)); procs = nprocs + size; 11930ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int)); CHKPTRQ(owner); /* see note*/ 11940ac07820SSatish Balay for ( i=0; i<N; i++ ) { 11950ac07820SSatish Balay idx = rows[i]; 11960ac07820SSatish Balay found = 0; 11970ac07820SSatish Balay for ( j=0; j<size; j++ ) { 11980ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 11990ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 12000ac07820SSatish Balay } 12010ac07820SSatish Balay } 1202e3372554SBarry Smith if (!found) SETERRQ(1,0,"Index out of range"); 12030ac07820SSatish Balay } 12040ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 12050ac07820SSatish Balay 12060ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 12070ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) ); CHKPTRQ(work); 12080ac07820SSatish Balay MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm); 12090ac07820SSatish Balay nrecvs = work[rank]; 12100ac07820SSatish Balay MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm); 12110ac07820SSatish Balay nmax = work[rank]; 12120ac07820SSatish Balay PetscFree(work); 12130ac07820SSatish Balay 12140ac07820SSatish Balay /* post receives: */ 12150ac07820SSatish Balay rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int)); /*see note */ 12160ac07820SSatish Balay CHKPTRQ(rvalues); 12170ac07820SSatish Balay recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request)); 12180ac07820SSatish Balay CHKPTRQ(recv_waits); 12190ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 12200ac07820SSatish Balay MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i); 12210ac07820SSatish Balay } 12220ac07820SSatish Balay 12230ac07820SSatish Balay /* do sends: 12240ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 12250ac07820SSatish Balay the ith processor 12260ac07820SSatish Balay */ 12270ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) ); CHKPTRQ(svalues); 12280ac07820SSatish Balay send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request)); 12290ac07820SSatish Balay CHKPTRQ(send_waits); 12300ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) ); CHKPTRQ(starts); 12310ac07820SSatish Balay starts[0] = 0; 12320ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 12330ac07820SSatish Balay for ( i=0; i<N; i++ ) { 12340ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 12350ac07820SSatish Balay } 12360ac07820SSatish Balay ISRestoreIndices(is,&rows); 12370ac07820SSatish Balay 12380ac07820SSatish Balay starts[0] = 0; 12390ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 12400ac07820SSatish Balay count = 0; 12410ac07820SSatish Balay for ( i=0; i<size; i++ ) { 12420ac07820SSatish Balay if (procs[i]) { 12430ac07820SSatish Balay MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++); 12440ac07820SSatish Balay } 12450ac07820SSatish Balay } 12460ac07820SSatish Balay PetscFree(starts); 12470ac07820SSatish Balay 12480ac07820SSatish Balay base = owners[rank]*bs; 12490ac07820SSatish Balay 12500ac07820SSatish Balay /* wait on receives */ 12510ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) ); CHKPTRQ(lens); 12520ac07820SSatish Balay source = lens + nrecvs; 12530ac07820SSatish Balay count = nrecvs; slen = 0; 12540ac07820SSatish Balay while (count) { 12550ac07820SSatish Balay MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status); 12560ac07820SSatish Balay /* unpack receives into our local space */ 12570ac07820SSatish Balay MPI_Get_count(&recv_status,MPI_INT,&n); 12580ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 12590ac07820SSatish Balay lens[imdex] = n; 12600ac07820SSatish Balay slen += n; 12610ac07820SSatish Balay count--; 12620ac07820SSatish Balay } 12630ac07820SSatish Balay PetscFree(recv_waits); 12640ac07820SSatish Balay 12650ac07820SSatish Balay /* move the data into the send scatter */ 12660ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) ); CHKPTRQ(lrows); 12670ac07820SSatish Balay count = 0; 12680ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 12690ac07820SSatish Balay values = rvalues + i*nmax; 12700ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 12710ac07820SSatish Balay lrows[count++] = values[j] - base; 12720ac07820SSatish Balay } 12730ac07820SSatish Balay } 12740ac07820SSatish Balay PetscFree(rvalues); PetscFree(lens); 12750ac07820SSatish Balay PetscFree(owner); PetscFree(nprocs); 12760ac07820SSatish Balay 12770ac07820SSatish Balay /* actually zap the local rows */ 1278537820f0SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 12790ac07820SSatish Balay PLogObjectParent(A,istmp); 12800ac07820SSatish Balay PetscFree(lrows); 12810ac07820SSatish Balay ierr = MatZeroRows(l->A,istmp,diag); CHKERRQ(ierr); 12820ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0); CHKERRQ(ierr); 12830ac07820SSatish Balay ierr = ISDestroy(istmp); CHKERRQ(ierr); 12840ac07820SSatish Balay 12850ac07820SSatish Balay /* wait on sends */ 12860ac07820SSatish Balay if (nsends) { 12870ac07820SSatish Balay send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status)); 12880ac07820SSatish Balay CHKPTRQ(send_status); 12890ac07820SSatish Balay MPI_Waitall(nsends,send_waits,send_status); 12900ac07820SSatish Balay PetscFree(send_status); 12910ac07820SSatish Balay } 12920ac07820SSatish Balay PetscFree(send_waits); PetscFree(svalues); 12930ac07820SSatish Balay 12940ac07820SSatish Balay return 0; 12950ac07820SSatish Balay } 1296ba4ca20aSSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 12975615d1e5SSatish Balay #undef __FUNC__ 12985615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1299ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1300ba4ca20aSSatish Balay { 1301ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1302ba4ca20aSSatish Balay 1303ba4ca20aSSatish Balay if (!a->rank) return MatPrintHelp_SeqBAIJ(a->A); 1304ba4ca20aSSatish Balay else return 0; 1305ba4ca20aSSatish Balay } 13060ac07820SSatish Balay 13075615d1e5SSatish Balay #undef __FUNC__ 13085615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1309ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1310bb5a7306SBarry Smith { 1311bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1312bb5a7306SBarry Smith int ierr; 1313bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A); CHKERRQ(ierr); 1314bb5a7306SBarry Smith return 0; 1315bb5a7306SBarry Smith } 1316bb5a7306SBarry Smith 13170ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat,Mat *,int); 13180ac07820SSatish Balay 131979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 132079bdfe76SSatish Balay static struct _MatOps MatOps = { 1321bd16c2feSSatish Balay MatSetValues_MPIBAIJ,MatGetRow_MPIBAIJ,MatRestoreRow_MPIBAIJ,MatMult_MPIBAIJ, 13224c50302cSBarry Smith MatMultAdd_MPIBAIJ,MatMultTrans_MPIBAIJ,MatMultTransAdd_MPIBAIJ,0, 13234c50302cSBarry Smith 0,0,0,0, 13240ac07820SSatish Balay 0,0,MatTranspose_MPIBAIJ,MatGetInfo_MPIBAIJ, 13250e95ebc0SSatish Balay 0,MatGetDiagonal_MPIBAIJ,MatDiagonalScale_MPIBAIJ,MatNorm_MPIBAIJ, 132658667388SSatish Balay MatAssemblyBegin_MPIBAIJ,MatAssemblyEnd_MPIBAIJ,0,MatSetOption_MPIBAIJ, 13274c50302cSBarry Smith MatZeroEntries_MPIBAIJ,MatZeroRows_MPIBAIJ,0, 13284c50302cSBarry Smith 0,0,0,MatGetSize_MPIBAIJ, 13294c50302cSBarry Smith MatGetLocalSize_MPIBAIJ,MatGetOwnershipRange_MPIBAIJ,0,0, 133094a9d846SBarry Smith 0,0,MatConvertSameType_MPIBAIJ,0,0, 1331d212a18eSSatish Balay 0,0,0,MatGetSubMatrices_MPIBAIJ, 1332ba4ca20aSSatish Balay MatIncreaseOverlap_MPIBAIJ,MatGetValues_MPIBAIJ,0,MatPrintHelp_MPIBAIJ, 1333bb5a7306SBarry Smith MatScale_MPIBAIJ,0,0,0,MatGetBlockSize_MPIBAIJ, 1334ab26458aSBarry Smith 0,0,0,0,0,0,MatSetUnfactored_MPIBAIJ,0,MatSetValuesBlocked_MPIBAIJ}; 133579bdfe76SSatish Balay 133679bdfe76SSatish Balay 13375615d1e5SSatish Balay #undef __FUNC__ 13385615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 133979bdfe76SSatish Balay /*@C 134079bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 134179bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 134279bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 134379bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 134479bdfe76SSatish Balay performance can be increased by more than a factor of 50. 134579bdfe76SSatish Balay 134679bdfe76SSatish Balay Input Parameters: 134779bdfe76SSatish Balay . comm - MPI communicator 134879bdfe76SSatish Balay . bs - size of blockk 134979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 135092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 135192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 135292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 135392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 135492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 135579bdfe76SSatish Balay . M - number of global rows (or PETSC_DECIDE to have calculated if m is given) 135692e8d321SLois Curfman McInnes . N - number of global columns (or PETSC_DECIDE to have calculated if n is given) 135779bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 135879bdfe76SSatish Balay submatrix (same for all local rows) 135992e8d321SLois Curfman McInnes . d_nzz - array containing the number of block nonzeros in the various block rows 136092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 136192e8d321SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if 136292e8d321SLois Curfman McInnes it is zero. 136392e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 136479bdfe76SSatish Balay submatrix (same for all local rows). 136592e8d321SLois Curfman McInnes . o_nzz - array containing the number of nonzeros in the various block rows of the 136692e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 136792e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 136879bdfe76SSatish Balay 136979bdfe76SSatish Balay Output Parameter: 137079bdfe76SSatish Balay . A - the matrix 137179bdfe76SSatish Balay 137279bdfe76SSatish Balay Notes: 137379bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 137479bdfe76SSatish Balay (possibly both). 137579bdfe76SSatish Balay 137679bdfe76SSatish Balay Storage Information: 137779bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 137879bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 137979bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 138079bdfe76SSatish Balay local matrix (a rectangular submatrix). 138179bdfe76SSatish Balay 138279bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 138379bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 138479bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 138579bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 138679bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 138779bdfe76SSatish Balay 138879bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 138979bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 139079bdfe76SSatish Balay 139179bdfe76SSatish Balay $ 0 1 2 3 4 5 6 7 8 9 10 11 139279bdfe76SSatish Balay $ ------------------- 139379bdfe76SSatish Balay $ row 3 | o o o d d d o o o o o o 139479bdfe76SSatish Balay $ row 4 | o o o d d d o o o o o o 139579bdfe76SSatish Balay $ row 5 | o o o d d d o o o o o o 139679bdfe76SSatish Balay $ ------------------- 139779bdfe76SSatish Balay $ 139879bdfe76SSatish Balay 139979bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 140079bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 140179bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 140257b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 140379bdfe76SSatish Balay 140479bdfe76SSatish Balay Now d_nz should indicate the number of nonzeros per row in the d matrix, 140579bdfe76SSatish Balay and o_nz should indicate the number of nonzeros per row in the o matrix. 140679bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 140792e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 140892e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 14096da5968aSLois Curfman McInnes matrices. 141079bdfe76SSatish Balay 141192e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 141279bdfe76SSatish Balay 141379bdfe76SSatish Balay .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues() 141479bdfe76SSatish Balay @*/ 141579bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 141679bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 141779bdfe76SSatish Balay { 141879bdfe76SSatish Balay Mat B; 141979bdfe76SSatish Balay Mat_MPIBAIJ *b; 14204c50302cSBarry Smith int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size; 142179bdfe76SSatish Balay 1422e3372554SBarry Smith if (bs < 1) SETERRQ(1,0,"invalid block size specified"); 142379bdfe76SSatish Balay *A = 0; 142479bdfe76SSatish Balay PetscHeaderCreate(B,_Mat,MAT_COOKIE,MATMPIBAIJ,comm); 142579bdfe76SSatish Balay PLogObjectCreate(B); 142679bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(b); 142779bdfe76SSatish Balay PetscMemzero(b,sizeof(Mat_MPIBAIJ)); 142879bdfe76SSatish Balay PetscMemcpy(&B->ops,&MatOps,sizeof(struct _MatOps)); 14294c50302cSBarry Smith MPI_Comm_size(comm,&size); 14304c50302cSBarry Smith if (size == 1) { 14314c50302cSBarry Smith B->ops.getrowij = MatGetRowIJ_MPIBAIJ; 14324c50302cSBarry Smith B->ops.restorerowij = MatRestoreRowIJ_MPIBAIJ; 14334c50302cSBarry Smith B->ops.lufactorsymbolic = MatLUFactorSymbolic_MPIBAIJ; 14344c50302cSBarry Smith B->ops.lufactornumeric = MatLUFactorNumeric_MPIBAIJ; 14354c50302cSBarry Smith B->ops.lufactor = MatLUFactor_MPIBAIJ; 14364c50302cSBarry Smith B->ops.solve = MatSolve_MPIBAIJ; 14374c50302cSBarry Smith B->ops.solveadd = MatSolveAdd_MPIBAIJ; 14384c50302cSBarry Smith B->ops.solvetrans = MatSolveTrans_MPIBAIJ; 14394c50302cSBarry Smith B->ops.solvetransadd = MatSolveTransAdd_MPIBAIJ; 14404c50302cSBarry Smith B->ops.ilufactorsymbolic = MatILUFactorSymbolic_MPIBAIJ; 14414c50302cSBarry Smith } 14424c50302cSBarry Smith 144379bdfe76SSatish Balay B->destroy = MatDestroy_MPIBAIJ; 144479bdfe76SSatish Balay B->view = MatView_MPIBAIJ; 144590f02eecSBarry Smith B->mapping = 0; 144679bdfe76SSatish Balay B->factor = 0; 144779bdfe76SSatish Balay B->assembled = PETSC_FALSE; 144879bdfe76SSatish Balay 1449e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 145079bdfe76SSatish Balay MPI_Comm_rank(comm,&b->rank); 145179bdfe76SSatish Balay MPI_Comm_size(comm,&b->size); 145279bdfe76SSatish Balay 145379bdfe76SSatish Balay if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) 1454e3372554SBarry Smith SETERRQ(1,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 1455e3372554SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) SETERRQ(1,0,"either M or m should be specified"); 1456e3372554SBarry Smith if ( M == PETSC_DECIDE && n == PETSC_DECIDE)SETERRQ(1,0,"either N or n should be specified"); 1457cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 1458cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 145979bdfe76SSatish Balay 146079bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 146179bdfe76SSatish Balay work[0] = m; work[1] = n; 146279bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 146379bdfe76SSatish Balay MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm ); 146479bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 146579bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 146679bdfe76SSatish Balay } 146779bdfe76SSatish Balay if (m == PETSC_DECIDE) { 146879bdfe76SSatish Balay Mbs = M/bs; 1469e3372554SBarry Smith if (Mbs*bs != M) SETERRQ(1,0,"No of global rows must be divisible by blocksize"); 147079bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 147179bdfe76SSatish Balay m = mbs*bs; 147279bdfe76SSatish Balay } 147379bdfe76SSatish Balay if (n == PETSC_DECIDE) { 147479bdfe76SSatish Balay Nbs = N/bs; 1475e3372554SBarry Smith if (Nbs*bs != N) SETERRQ(1,0,"No of global cols must be divisible by blocksize"); 147679bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 147779bdfe76SSatish Balay n = nbs*bs; 147879bdfe76SSatish Balay } 1479e3372554SBarry Smith if (mbs*bs != m || nbs*bs != n) SETERRQ(1,0,"No of local rows, cols must be divisible by blocksize"); 148079bdfe76SSatish Balay 148179bdfe76SSatish Balay b->m = m; B->m = m; 148279bdfe76SSatish Balay b->n = n; B->n = n; 148379bdfe76SSatish Balay b->N = N; B->N = N; 148479bdfe76SSatish Balay b->M = M; B->M = M; 148579bdfe76SSatish Balay b->bs = bs; 148679bdfe76SSatish Balay b->bs2 = bs*bs; 148779bdfe76SSatish Balay b->mbs = mbs; 148879bdfe76SSatish Balay b->nbs = nbs; 148979bdfe76SSatish Balay b->Mbs = Mbs; 149079bdfe76SSatish Balay b->Nbs = Nbs; 149179bdfe76SSatish Balay 149279bdfe76SSatish Balay /* build local table of row and column ownerships */ 149379bdfe76SSatish Balay b->rowners = (int *) PetscMalloc(2*(b->size+2)*sizeof(int)); CHKPTRQ(b->rowners); 149479bdfe76SSatish Balay PLogObjectMemory(B,2*(b->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 14950ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 149679bdfe76SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm); 149779bdfe76SSatish Balay b->rowners[0] = 0; 149879bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 149979bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 150079bdfe76SSatish Balay } 150179bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 150279bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 15034fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 15044fa0d573SSatish Balay b->rend_bs = b->rend * bs; 15054fa0d573SSatish Balay 150679bdfe76SSatish Balay MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm); 150779bdfe76SSatish Balay b->cowners[0] = 0; 150879bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 150979bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 151079bdfe76SSatish Balay } 151179bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 151279bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 15134fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 15144fa0d573SSatish Balay b->cend_bs = b->cend * bs; 151579bdfe76SSatish Balay 151679bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 151779bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A); CHKERRQ(ierr); 151879bdfe76SSatish Balay PLogObjectParent(B,b->A); 151979bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 152079bdfe76SSatish Balay ierr = MatCreateSeqBAIJ(MPI_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B); CHKERRQ(ierr); 152179bdfe76SSatish Balay PLogObjectParent(B,b->B); 152279bdfe76SSatish Balay 152379bdfe76SSatish Balay /* build cache for off array entries formed */ 152479bdfe76SSatish Balay ierr = StashBuild_Private(&b->stash); CHKERRQ(ierr); 152590f02eecSBarry Smith b->donotstash = 0; 152679bdfe76SSatish Balay b->colmap = 0; 152779bdfe76SSatish Balay b->garray = 0; 152879bdfe76SSatish Balay b->roworiented = 1; 152979bdfe76SSatish Balay 153079bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 153179bdfe76SSatish Balay b->lvec = 0; 153279bdfe76SSatish Balay b->Mvctx = 0; 153379bdfe76SSatish Balay 153479bdfe76SSatish Balay /* stuff for MatGetRow() */ 153579bdfe76SSatish Balay b->rowindices = 0; 153679bdfe76SSatish Balay b->rowvalues = 0; 153779bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 153879bdfe76SSatish Balay 153979bdfe76SSatish Balay *A = B; 154079bdfe76SSatish Balay return 0; 154179bdfe76SSatish Balay } 1542026e39d0SSatish Balay 15435615d1e5SSatish Balay #undef __FUNC__ 15445615d1e5SSatish Balay #define __FUNC__ "MatConvertSameType_MPIBAIJ" 15450ac07820SSatish Balay static int MatConvertSameType_MPIBAIJ(Mat matin,Mat *newmat,int cpvalues) 15460ac07820SSatish Balay { 15470ac07820SSatish Balay Mat mat; 15480ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 15490ac07820SSatish Balay int ierr, len=0, flg; 15500ac07820SSatish Balay 15510ac07820SSatish Balay *newmat = 0; 15520ac07820SSatish Balay PetscHeaderCreate(mat,_Mat,MAT_COOKIE,MATMPIBAIJ,matin->comm); 15530ac07820SSatish Balay PLogObjectCreate(mat); 15540ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ)); CHKPTRQ(a); 15550ac07820SSatish Balay PetscMemcpy(&mat->ops,&MatOps,sizeof(struct _MatOps)); 15560ac07820SSatish Balay mat->destroy = MatDestroy_MPIBAIJ; 15570ac07820SSatish Balay mat->view = MatView_MPIBAIJ; 15580ac07820SSatish Balay mat->factor = matin->factor; 15590ac07820SSatish Balay mat->assembled = PETSC_TRUE; 15600ac07820SSatish Balay 15610ac07820SSatish Balay a->m = mat->m = oldmat->m; 15620ac07820SSatish Balay a->n = mat->n = oldmat->n; 15630ac07820SSatish Balay a->M = mat->M = oldmat->M; 15640ac07820SSatish Balay a->N = mat->N = oldmat->N; 15650ac07820SSatish Balay 15660ac07820SSatish Balay a->bs = oldmat->bs; 15670ac07820SSatish Balay a->bs2 = oldmat->bs2; 15680ac07820SSatish Balay a->mbs = oldmat->mbs; 15690ac07820SSatish Balay a->nbs = oldmat->nbs; 15700ac07820SSatish Balay a->Mbs = oldmat->Mbs; 15710ac07820SSatish Balay a->Nbs = oldmat->Nbs; 15720ac07820SSatish Balay 15730ac07820SSatish Balay a->rstart = oldmat->rstart; 15740ac07820SSatish Balay a->rend = oldmat->rend; 15750ac07820SSatish Balay a->cstart = oldmat->cstart; 15760ac07820SSatish Balay a->cend = oldmat->cend; 15770ac07820SSatish Balay a->size = oldmat->size; 15780ac07820SSatish Balay a->rank = oldmat->rank; 1579e0fa3b82SLois Curfman McInnes mat->insertmode = NOT_SET_VALUES; 15800ac07820SSatish Balay a->rowvalues = 0; 15810ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 15820ac07820SSatish Balay 15830ac07820SSatish Balay a->rowners = (int *) PetscMalloc(2*(a->size+2)*sizeof(int)); CHKPTRQ(a->rowners); 15840ac07820SSatish Balay PLogObjectMemory(mat,2*(a->size+2)*sizeof(int)+sizeof(struct _Mat)+sizeof(Mat_MPIBAIJ)); 15850ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 15860ac07820SSatish Balay PetscMemcpy(a->rowners,oldmat->rowners,2*(a->size+2)*sizeof(int)); 15870ac07820SSatish Balay ierr = StashInitialize_Private(&a->stash); CHKERRQ(ierr); 15880ac07820SSatish Balay if (oldmat->colmap) { 15890ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 15900ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 15910ac07820SSatish Balay PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int)); 15920ac07820SSatish Balay } else a->colmap = 0; 15930ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 15940ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int)); CHKPTRQ(a->garray); 15950ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 15960ac07820SSatish Balay PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int)); 15970ac07820SSatish Balay } else a->garray = 0; 15980ac07820SSatish Balay 15990ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec); CHKERRQ(ierr); 16000ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 16010ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx); CHKERRQ(ierr); 16020ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 16030ac07820SSatish Balay ierr = MatConvert(oldmat->A,MATSAME,&a->A); CHKERRQ(ierr); 16040ac07820SSatish Balay PLogObjectParent(mat,a->A); 16050ac07820SSatish Balay ierr = MatConvert(oldmat->B,MATSAME,&a->B); CHKERRQ(ierr); 16060ac07820SSatish Balay PLogObjectParent(mat,a->B); 16070ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg); CHKERRQ(ierr); 16080ac07820SSatish Balay if (flg) { 16090ac07820SSatish Balay ierr = MatPrintHelp(mat); CHKERRQ(ierr); 16100ac07820SSatish Balay } 16110ac07820SSatish Balay *newmat = mat; 16120ac07820SSatish Balay return 0; 16130ac07820SSatish Balay } 161457b952d6SSatish Balay 161557b952d6SSatish Balay #include "sys.h" 161657b952d6SSatish Balay 16175615d1e5SSatish Balay #undef __FUNC__ 16185615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 161957b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 162057b952d6SSatish Balay { 162157b952d6SSatish Balay Mat A; 162257b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 162357b952d6SSatish Balay Scalar *vals,*buf; 162457b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 162557b952d6SSatish Balay MPI_Status status; 1626cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 162757b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 162857b952d6SSatish Balay int flg,tag = ((PetscObject)viewer)->tag,bs=1,bs2,Mbs,mbs,extra_rows; 162957b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 163057b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 163157b952d6SSatish Balay 163257b952d6SSatish Balay 163357b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 163457b952d6SSatish Balay bs2 = bs*bs; 163557b952d6SSatish Balay 163657b952d6SSatish Balay MPI_Comm_size(comm,&size); MPI_Comm_rank(comm,&rank); 163757b952d6SSatish Balay if (!rank) { 163857b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd); CHKERRQ(ierr); 163957b952d6SSatish Balay ierr = PetscBinaryRead(fd,(char *)header,4,BINARY_INT); CHKERRQ(ierr); 1640e3372554SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(1,0,"not matrix object"); 164157b952d6SSatish Balay } 164257b952d6SSatish Balay 164357b952d6SSatish Balay MPI_Bcast(header+1,3,MPI_INT,0,comm); 164457b952d6SSatish Balay M = header[1]; N = header[2]; 164557b952d6SSatish Balay 1646e3372554SBarry Smith if (M != N) SETERRQ(1,0,"Can only do square matrices"); 164757b952d6SSatish Balay 164857b952d6SSatish Balay /* 164957b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 165057b952d6SSatish Balay divisible by the blocksize 165157b952d6SSatish Balay */ 165257b952d6SSatish Balay Mbs = M/bs; 165357b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 165457b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 165557b952d6SSatish Balay else Mbs++; 165657b952d6SSatish Balay if (extra_rows &&!rank) { 1657b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 165857b952d6SSatish Balay } 1659537820f0SBarry Smith 166057b952d6SSatish Balay /* determine ownership of all rows */ 166157b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 166257b952d6SSatish Balay m = mbs * bs; 1663cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int)); CHKPTRQ(rowners); 1664cee3aa6bSSatish Balay browners = rowners + size + 1; 166557b952d6SSatish Balay MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm); 166657b952d6SSatish Balay rowners[0] = 0; 1667cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 1668cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 166957b952d6SSatish Balay rstart = rowners[rank]; 167057b952d6SSatish Balay rend = rowners[rank+1]; 167157b952d6SSatish Balay 167257b952d6SSatish Balay /* distribute row lengths to all processors */ 167357b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) ); CHKPTRQ(locrowlens); 167457b952d6SSatish Balay if (!rank) { 167557b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) ); CHKPTRQ(rowlengths); 167657b952d6SSatish Balay ierr = PetscBinaryRead(fd,rowlengths,M,BINARY_INT); CHKERRQ(ierr); 167757b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 167857b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(sndcounts); 1679cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 1680cee3aa6bSSatish Balay MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm); 168157b952d6SSatish Balay PetscFree(sndcounts); 168257b952d6SSatish Balay } 168357b952d6SSatish Balay else { 168457b952d6SSatish Balay MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm); 168557b952d6SSatish Balay } 168657b952d6SSatish Balay 168757b952d6SSatish Balay if (!rank) { 168857b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 168957b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) ); CHKPTRQ(procsnz); 169057b952d6SSatish Balay PetscMemzero(procsnz,size*sizeof(int)); 169157b952d6SSatish Balay for ( i=0; i<size; i++ ) { 169257b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 169357b952d6SSatish Balay procsnz[i] += rowlengths[j]; 169457b952d6SSatish Balay } 169557b952d6SSatish Balay } 169657b952d6SSatish Balay PetscFree(rowlengths); 169757b952d6SSatish Balay 169857b952d6SSatish Balay /* determine max buffer needed and allocate it */ 169957b952d6SSatish Balay maxnz = 0; 170057b952d6SSatish Balay for ( i=0; i<size; i++ ) { 170157b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 170257b952d6SSatish Balay } 170357b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) ); CHKPTRQ(cols); 170457b952d6SSatish Balay 170557b952d6SSatish Balay /* read in my part of the matrix column indices */ 170657b952d6SSatish Balay nz = procsnz[0]; 170757b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 170857b952d6SSatish Balay mycols = ibuf; 1709cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 171057b952d6SSatish Balay ierr = PetscBinaryRead(fd,mycols,nz,BINARY_INT); CHKERRQ(ierr); 1711cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 1712cee3aa6bSSatish Balay 171357b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 171457b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 171557b952d6SSatish Balay nz = procsnz[i]; 171657b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 171757b952d6SSatish Balay MPI_Send(cols,nz,MPI_INT,i,tag,comm); 171857b952d6SSatish Balay } 171957b952d6SSatish Balay /* read in the stuff for the last proc */ 172057b952d6SSatish Balay if ( size != 1 ) { 172157b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 172257b952d6SSatish Balay ierr = PetscBinaryRead(fd,cols,nz,BINARY_INT); CHKERRQ(ierr); 172357b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 1724cee3aa6bSSatish Balay MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm); 172557b952d6SSatish Balay } 172657b952d6SSatish Balay PetscFree(cols); 172757b952d6SSatish Balay } 172857b952d6SSatish Balay else { 172957b952d6SSatish Balay /* determine buffer space needed for message */ 173057b952d6SSatish Balay nz = 0; 173157b952d6SSatish Balay for ( i=0; i<m; i++ ) { 173257b952d6SSatish Balay nz += locrowlens[i]; 173357b952d6SSatish Balay } 173457b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) ); CHKPTRQ(ibuf); 173557b952d6SSatish Balay mycols = ibuf; 173657b952d6SSatish Balay /* receive message of column indices*/ 173757b952d6SSatish Balay MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status); 173857b952d6SSatish Balay MPI_Get_count(&status,MPI_INT,&maxnz); 1739e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 174057b952d6SSatish Balay } 174157b952d6SSatish Balay 174257b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 1743cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) ); CHKPTRQ(dlens); 1744cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 174557b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) ); CHKPTRQ(mask); 1746cee3aa6bSSatish Balay PetscMemzero(mask,3*Mbs*sizeof(int)); 174757b952d6SSatish Balay masked1 = mask + Mbs; 174857b952d6SSatish Balay masked2 = masked1 + Mbs; 174957b952d6SSatish Balay rowcount = 0; nzcount = 0; 175057b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 175157b952d6SSatish Balay dcount = 0; 175257b952d6SSatish Balay odcount = 0; 175357b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 175457b952d6SSatish Balay kmax = locrowlens[rowcount]; 175557b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 175657b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 175757b952d6SSatish Balay if (!mask[tmp]) { 175857b952d6SSatish Balay mask[tmp] = 1; 175957b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 176057b952d6SSatish Balay else masked1[dcount++] = tmp; 176157b952d6SSatish Balay } 176257b952d6SSatish Balay } 176357b952d6SSatish Balay rowcount++; 176457b952d6SSatish Balay } 1765cee3aa6bSSatish Balay 176657b952d6SSatish Balay dlens[i] = dcount; 176757b952d6SSatish Balay odlens[i] = odcount; 1768cee3aa6bSSatish Balay 176957b952d6SSatish Balay /* zero out the mask elements we set */ 177057b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 177157b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 177257b952d6SSatish Balay } 1773cee3aa6bSSatish Balay 177457b952d6SSatish Balay /* create our matrix */ 1775537820f0SBarry Smith ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat); 1776537820f0SBarry Smith CHKERRQ(ierr); 177757b952d6SSatish Balay A = *newmat; 17786d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 177957b952d6SSatish Balay 178057b952d6SSatish Balay if (!rank) { 178157b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) ); CHKPTRQ(buf); 178257b952d6SSatish Balay /* read in my part of the matrix numerical values */ 178357b952d6SSatish Balay nz = procsnz[0]; 178457b952d6SSatish Balay vals = buf; 1785cee3aa6bSSatish Balay mycols = ibuf; 1786cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 178757b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 1788cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 1789537820f0SBarry Smith 179057b952d6SSatish Balay /* insert into matrix */ 179157b952d6SSatish Balay jj = rstart*bs; 179257b952d6SSatish Balay for ( i=0; i<m; i++ ) { 179357b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 179457b952d6SSatish Balay mycols += locrowlens[i]; 179557b952d6SSatish Balay vals += locrowlens[i]; 179657b952d6SSatish Balay jj++; 179757b952d6SSatish Balay } 179857b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 179957b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 180057b952d6SSatish Balay nz = procsnz[i]; 180157b952d6SSatish Balay vals = buf; 180257b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 180357b952d6SSatish Balay MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm); 180457b952d6SSatish Balay } 180557b952d6SSatish Balay /* the last proc */ 180657b952d6SSatish Balay if ( size != 1 ){ 180757b952d6SSatish Balay nz = procsnz[i] - extra_rows; 1808cee3aa6bSSatish Balay vals = buf; 180957b952d6SSatish Balay ierr = PetscBinaryRead(fd,vals,nz,BINARY_SCALAR); CHKERRQ(ierr); 181057b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 1811cee3aa6bSSatish Balay MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm); 181257b952d6SSatish Balay } 181357b952d6SSatish Balay PetscFree(procsnz); 181457b952d6SSatish Balay } 181557b952d6SSatish Balay else { 181657b952d6SSatish Balay /* receive numeric values */ 181757b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) ); CHKPTRQ(buf); 181857b952d6SSatish Balay 181957b952d6SSatish Balay /* receive message of values*/ 182057b952d6SSatish Balay vals = buf; 1821cee3aa6bSSatish Balay mycols = ibuf; 182257b952d6SSatish Balay MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status); 182357b952d6SSatish Balay MPI_Get_count(&status,MPIU_SCALAR,&maxnz); 1824e3372554SBarry Smith if (maxnz != nz) SETERRQ(1,0,"something is wrong with file"); 182557b952d6SSatish Balay 182657b952d6SSatish Balay /* insert into matrix */ 182757b952d6SSatish Balay jj = rstart*bs; 1828cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 182957b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 183057b952d6SSatish Balay mycols += locrowlens[i]; 183157b952d6SSatish Balay vals += locrowlens[i]; 183257b952d6SSatish Balay jj++; 183357b952d6SSatish Balay } 183457b952d6SSatish Balay } 183557b952d6SSatish Balay PetscFree(locrowlens); 183657b952d6SSatish Balay PetscFree(buf); 183757b952d6SSatish Balay PetscFree(ibuf); 183857b952d6SSatish Balay PetscFree(rowners); 183957b952d6SSatish Balay PetscFree(dlens); 1840cee3aa6bSSatish Balay PetscFree(mask); 18416d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 18426d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY); CHKERRQ(ierr); 184357b952d6SSatish Balay return 0; 184457b952d6SSatish Balay } 184557b952d6SSatish Balay 184657b952d6SSatish Balay 1847