1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 3e090d566SSatish Balay #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 1693fea6afSBarry Smith /* UGLY, ugly, ugly 1787828ca2SBarry Smith When MatScalar == PetscScalar the function MatSetValuesBlocked_MPIBAIJ_MatScalar() does 1893fea6afSBarry Smith not exist. Otherwise ..._MatScalar() takes matrix elements in single precision and 1993fea6afSBarry Smith inserts them into the single precision data structure. The function MatSetValuesBlocked_MPIBAIJ() 2093fea6afSBarry Smith converts the entries into single precision and then calls ..._MatScalar() to put them 2193fea6afSBarry Smith into the single precision data structures. 2293fea6afSBarry Smith */ 2393fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 24b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 25b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 26b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 27b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 28b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat,PetscInt,const PetscInt*,PetscInt,const PetscInt*,const MatScalar*,InsertMode); 2993fea6afSBarry Smith #else 306fa18ffdSBarry Smith #define MatSetValuesBlocked_SeqBAIJ_MatScalar MatSetValuesBlocked_SeqBAIJ 3193fea6afSBarry Smith #define MatSetValues_MPIBAIJ_MatScalar MatSetValues_MPIBAIJ 3293fea6afSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_MatScalar MatSetValuesBlocked_MPIBAIJ 336fa18ffdSBarry Smith #define MatSetValues_MPIBAIJ_HT_MatScalar MatSetValues_MPIBAIJ_HT 346fa18ffdSBarry Smith #define MatSetValuesBlocked_MPIBAIJ_HT_MatScalar MatSetValuesBlocked_MPIBAIJ_HT 3593fea6afSBarry Smith #endif 363b2fbd54SBarry Smith 374a2ae208SSatish Balay #undef __FUNCT__ 38985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 39985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 407843d17aSBarry Smith { 417843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 42dfbe8321SBarry Smith PetscErrorCode ierr; 43985db425SBarry Smith PetscInt i,*idxb = 0; 4487828ca2SBarry Smith PetscScalar *va,*vb; 457843d17aSBarry Smith Vec vtmp; 467843d17aSBarry Smith 477843d17aSBarry Smith PetscFunctionBegin; 487843d17aSBarry Smith 49985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 501ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 51985db425SBarry Smith if (idx) { 52ff6e566aSBarry Smith for (i=0; i<A->cmap.n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap.rstart;} 53985db425SBarry Smith } 547843d17aSBarry Smith 55899cda47SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap.n,&vtmp);CHKERRQ(ierr); 56985db425SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap.n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 57985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 581ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 597843d17aSBarry Smith 60899cda47SBarry Smith for (i=0; i<A->rmap.n; i++){ 61985db425SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap.bs*a->garray[idxb[i]/A->cmap.bs] + (idxb[i] % A->cmap.bs);} 627843d17aSBarry Smith } 637843d17aSBarry Smith 641ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 651ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 66985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 67ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 687843d17aSBarry Smith PetscFunctionReturn(0); 697843d17aSBarry Smith } 707843d17aSBarry Smith 717fc3c18eSBarry Smith EXTERN_C_BEGIN 724a2ae208SSatish Balay #undef __FUNCT__ 734a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 74be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 757fc3c18eSBarry Smith { 767fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 77dfbe8321SBarry Smith PetscErrorCode ierr; 787fc3c18eSBarry Smith 797fc3c18eSBarry Smith PetscFunctionBegin; 807fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 817fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 827fc3c18eSBarry Smith PetscFunctionReturn(0); 837fc3c18eSBarry Smith } 847fc3c18eSBarry Smith EXTERN_C_END 857fc3c18eSBarry Smith 867fc3c18eSBarry Smith EXTERN_C_BEGIN 874a2ae208SSatish Balay #undef __FUNCT__ 884a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 89be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 907fc3c18eSBarry Smith { 917fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 92dfbe8321SBarry Smith PetscErrorCode ierr; 937fc3c18eSBarry Smith 947fc3c18eSBarry Smith PetscFunctionBegin; 957fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 967fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 977fc3c18eSBarry Smith PetscFunctionReturn(0); 987fc3c18eSBarry Smith } 997fc3c18eSBarry Smith EXTERN_C_END 1007fc3c18eSBarry Smith 101537820f0SBarry Smith /* 102537820f0SBarry Smith Local utility routine that creates a mapping from the global column 10357b952d6SSatish Balay number to the local number in the off-diagonal part of the local 10457b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 10557b952d6SSatish Balay length of colmap equals the global matrix length. 10657b952d6SSatish Balay */ 1074a2ae208SSatish Balay #undef __FUNCT__ 1084a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 109dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 11057b952d6SSatish Balay { 11157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 11257b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 1136849ba73SBarry Smith PetscErrorCode ierr; 114899cda47SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap.bs; 11557b952d6SSatish Balay 116d64ed03dSBarry Smith PetscFunctionBegin; 117aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 118f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 11948e59246SSatish Balay for (i=0; i<nbs; i++){ 1200f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 12148e59246SSatish Balay } 12248e59246SSatish Balay #else 123b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 12452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 125b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 126928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 12748e59246SSatish Balay #endif 1283a40ed3dSBarry Smith PetscFunctionReturn(0); 12957b952d6SSatish Balay } 13057b952d6SSatish Balay 13180c1aa95SSatish Balay #define CHUNKSIZE 10 13280c1aa95SSatish Balay 133f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 13480c1aa95SSatish Balay { \ 13580c1aa95SSatish Balay \ 13680c1aa95SSatish Balay brow = row/bs; \ 13780c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 138ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 13980c1aa95SSatish Balay bcol = col/bs; \ 14080c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 141ab26458aSBarry Smith low = 0; high = nrow; \ 142ab26458aSBarry Smith while (high-low > 3) { \ 143ab26458aSBarry Smith t = (low+high)/2; \ 144ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 145ab26458aSBarry Smith else low = t; \ 146ab26458aSBarry Smith } \ 147ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 14880c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 14980c1aa95SSatish Balay if (rp[_i] == bcol) { \ 15080c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 151eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 152eada6651SSatish Balay else *bap = value; \ 153ac7a638eSSatish Balay goto a_noinsert; \ 15480c1aa95SSatish Balay } \ 15580c1aa95SSatish Balay } \ 15689280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 157085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 158421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 15980c1aa95SSatish Balay N = nrow++ - 1; \ 16080c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 16180c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 16280c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1633eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 16480c1aa95SSatish Balay } \ 1653eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 16680c1aa95SSatish Balay rp[_i] = bcol; \ 16780c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 168ac7a638eSSatish Balay a_noinsert:; \ 16980c1aa95SSatish Balay ailen[brow] = nrow; \ 17080c1aa95SSatish Balay } 17157b952d6SSatish Balay 172ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 173ac7a638eSSatish Balay { \ 174ac7a638eSSatish Balay brow = row/bs; \ 175ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 176ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 177ac7a638eSSatish Balay bcol = col/bs; \ 178ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 179ac7a638eSSatish Balay low = 0; high = nrow; \ 180ac7a638eSSatish Balay while (high-low > 3) { \ 181ac7a638eSSatish Balay t = (low+high)/2; \ 182ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 183ac7a638eSSatish Balay else low = t; \ 184ac7a638eSSatish Balay } \ 185ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 186ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 187ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 188ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 189ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 190ac7a638eSSatish Balay else *bap = value; \ 191ac7a638eSSatish Balay goto b_noinsert; \ 192ac7a638eSSatish Balay } \ 193ac7a638eSSatish Balay } \ 19489280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 195085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 196421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 197085a36d4SBarry Smith CHKMEMQ;\ 198ac7a638eSSatish Balay N = nrow++ - 1; \ 199ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 200ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 201ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 2023eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 203ac7a638eSSatish Balay } \ 2043eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 205ac7a638eSSatish Balay rp[_i] = bcol; \ 206ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 207ac7a638eSSatish Balay b_noinsert:; \ 208ac7a638eSSatish Balay bilen[brow] = nrow; \ 209ac7a638eSSatish Balay } 210ac7a638eSSatish Balay 21193fea6afSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 2124a2ae208SSatish Balay #undef __FUNCT__ 2134a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 214b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 21557b952d6SSatish Balay { 2166fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 217dfbe8321SBarry Smith PetscErrorCode ierr; 218b24ad042SBarry Smith PetscInt i,N = m*n; 2196fa18ffdSBarry Smith MatScalar *vsingle; 22093fea6afSBarry Smith 22193fea6afSBarry Smith PetscFunctionBegin; 2226fa18ffdSBarry Smith if (N > b->setvalueslen) { 22305b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 22482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2256fa18ffdSBarry Smith b->setvalueslen = N; 2266fa18ffdSBarry Smith } 2276fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2286fa18ffdSBarry Smith 22993fea6afSBarry Smith for (i=0; i<N; i++) { 23093fea6afSBarry Smith vsingle[i] = v[i]; 23193fea6afSBarry Smith } 23293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 23393fea6afSBarry Smith PetscFunctionReturn(0); 23493fea6afSBarry Smith } 23593fea6afSBarry Smith 2364a2ae208SSatish Balay #undef __FUNCT__ 2374a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 238b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 23993fea6afSBarry Smith { 2406fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 241dfbe8321SBarry Smith PetscErrorCode ierr; 242b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 2436fa18ffdSBarry Smith MatScalar *vsingle; 24493fea6afSBarry Smith 24593fea6afSBarry Smith PetscFunctionBegin; 2466fa18ffdSBarry Smith if (N > b->setvalueslen) { 24705b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 24882502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2496fa18ffdSBarry Smith b->setvalueslen = N; 2506fa18ffdSBarry Smith } 2516fa18ffdSBarry Smith vsingle = b->setvaluescopy; 25293fea6afSBarry Smith for (i=0; i<N; i++) { 25393fea6afSBarry Smith vsingle[i] = v[i]; 25493fea6afSBarry Smith } 25593fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 25693fea6afSBarry Smith PetscFunctionReturn(0); 25793fea6afSBarry Smith } 2586fa18ffdSBarry Smith 2594a2ae208SSatish Balay #undef __FUNCT__ 2604a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 261b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 2626fa18ffdSBarry Smith { 2636fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 264dfbe8321SBarry Smith PetscErrorCode ierr; 265b24ad042SBarry Smith PetscInt i,N = m*n; 2666fa18ffdSBarry Smith MatScalar *vsingle; 2676fa18ffdSBarry Smith 2686fa18ffdSBarry Smith PetscFunctionBegin; 2696fa18ffdSBarry Smith if (N > b->setvalueslen) { 27005b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 27182502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2726fa18ffdSBarry Smith b->setvalueslen = N; 2736fa18ffdSBarry Smith } 2746fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2756fa18ffdSBarry Smith for (i=0; i<N; i++) { 2766fa18ffdSBarry Smith vsingle[i] = v[i]; 2776fa18ffdSBarry Smith } 2786fa18ffdSBarry Smith ierr = MatSetValues_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 2796fa18ffdSBarry Smith PetscFunctionReturn(0); 2806fa18ffdSBarry Smith } 2816fa18ffdSBarry Smith 2824a2ae208SSatish Balay #undef __FUNCT__ 2834a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 284b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 2856fa18ffdSBarry Smith { 2866fa18ffdSBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)mat->data; 287dfbe8321SBarry Smith PetscErrorCode ierr; 288b24ad042SBarry Smith PetscInt i,N = m*n*b->bs2; 2896fa18ffdSBarry Smith MatScalar *vsingle; 2906fa18ffdSBarry Smith 2916fa18ffdSBarry Smith PetscFunctionBegin; 2926fa18ffdSBarry Smith if (N > b->setvalueslen) { 29305b42c5fSBarry Smith ierr = PetscFree(b->setvaluescopy);CHKERRQ(ierr); 29482502324SSatish Balay ierr = PetscMalloc(N*sizeof(MatScalar),&b->setvaluescopy);CHKERRQ(ierr); 2956fa18ffdSBarry Smith b->setvalueslen = N; 2966fa18ffdSBarry Smith } 2976fa18ffdSBarry Smith vsingle = b->setvaluescopy; 2986fa18ffdSBarry Smith for (i=0; i<N; i++) { 2996fa18ffdSBarry Smith vsingle[i] = v[i]; 3006fa18ffdSBarry Smith } 3016fa18ffdSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(mat,m,im,n,in,vsingle,addv);CHKERRQ(ierr); 3026fa18ffdSBarry Smith PetscFunctionReturn(0); 3036fa18ffdSBarry Smith } 30493fea6afSBarry Smith #endif 30593fea6afSBarry Smith 3064a2ae208SSatish Balay #undef __FUNCT__ 307e03e44c9SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_MatScalar" 308b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 30993fea6afSBarry Smith { 31057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 31193fea6afSBarry Smith MatScalar value; 312273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 313dfbe8321SBarry Smith PetscErrorCode ierr; 314b24ad042SBarry Smith PetscInt i,j,row,col; 315899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 316899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,cstart_orig=mat->cmap.rstart; 317899cda47SBarry Smith PetscInt cend_orig=mat->cmap.rend,bs=mat->rmap.bs; 31857b952d6SSatish Balay 319eada6651SSatish Balay /* Some Variables required in the macro */ 32080c1aa95SSatish Balay Mat A = baij->A; 32180c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 322b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 3233eda8832SBarry Smith MatScalar *aa=a->a; 324ac7a638eSSatish Balay 325ac7a638eSSatish Balay Mat B = baij->B; 326ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 327b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 3283eda8832SBarry Smith MatScalar *ba=b->a; 329ac7a638eSSatish Balay 330b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 331b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 3323eda8832SBarry Smith MatScalar *ap,*bap; 33380c1aa95SSatish Balay 334d64ed03dSBarry Smith PetscFunctionBegin; 33557b952d6SSatish Balay for (i=0; i<m; i++) { 3365ef9f2a5SBarry Smith if (im[i] < 0) continue; 3372515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 338899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 339639f9d9dSBarry Smith #endif 34057b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 34157b952d6SSatish Balay row = im[i] - rstart_orig; 34257b952d6SSatish Balay for (j=0; j<n; j++) { 34357b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 34457b952d6SSatish Balay col = in[j] - cstart_orig; 34557b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 346f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 34780c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 34873959e64SBarry Smith } else if (in[j] < 0) continue; 3492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 350899cda47SBarry Smith else if (in[j] >= mat->cmap.N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap.N-1);} 351639f9d9dSBarry Smith #endif 35257b952d6SSatish Balay else { 35357b952d6SSatish Balay if (mat->was_assembled) { 354905e6a2fSBarry Smith if (!baij->colmap) { 355905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 356905e6a2fSBarry Smith } 357aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3580f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 359bba1ac68SSatish Balay col = col - 1; 36048e59246SSatish Balay #else 361bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 36248e59246SSatish Balay #endif 36357b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 36457b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 3658295de27SSatish Balay col = in[j]; 3669bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 3679bf004c3SSatish Balay B = baij->B; 3689bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 3699bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 3709bf004c3SSatish Balay ba=b->a; 371bba1ac68SSatish Balay } else col += in[j]%bs; 3728295de27SSatish Balay } else col = in[j]; 37357b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 37490da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 37590da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 37657b952d6SSatish Balay } 37757b952d6SSatish Balay } 378d64ed03dSBarry Smith } else { 37990f02eecSBarry Smith if (!baij->donotstash) { 380ff2fd236SBarry Smith if (roworiented) { 3816fa18ffdSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 382ff2fd236SBarry Smith } else { 3836fa18ffdSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 38457b952d6SSatish Balay } 38557b952d6SSatish Balay } 38657b952d6SSatish Balay } 38790f02eecSBarry Smith } 3883a40ed3dSBarry Smith PetscFunctionReturn(0); 38957b952d6SSatish Balay } 39057b952d6SSatish Balay 3914a2ae208SSatish Balay #undef __FUNCT__ 3924a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_MatScalar" 393b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 394ab26458aSBarry Smith { 395ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 396f15d580aSBarry Smith const MatScalar *value; 397f15d580aSBarry Smith MatScalar *barray=baij->barray; 398273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 399dfbe8321SBarry Smith PetscErrorCode ierr; 400899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 401899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 402899cda47SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap.bs,bs2=baij->bs2; 403ab26458aSBarry Smith 404b16ae2b1SBarry Smith PetscFunctionBegin; 40530793edcSSatish Balay if(!barray) { 40682502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 40782502324SSatish Balay baij->barray = barray; 40830793edcSSatish Balay } 40930793edcSSatish Balay 410ab26458aSBarry Smith if (roworiented) { 411ab26458aSBarry Smith stepval = (n-1)*bs; 412ab26458aSBarry Smith } else { 413ab26458aSBarry Smith stepval = (m-1)*bs; 414ab26458aSBarry Smith } 415ab26458aSBarry Smith for (i=0; i<m; i++) { 4165ef9f2a5SBarry Smith if (im[i] < 0) continue; 4172515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 41877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 419ab26458aSBarry Smith #endif 420ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 421ab26458aSBarry Smith row = im[i] - rstart; 422ab26458aSBarry Smith for (j=0; j<n; j++) { 42315b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 42415b57d14SSatish Balay if ((roworiented) && (n == 1)) { 425f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 42615b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 427f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 42815b57d14SSatish Balay } else { /* Here a copy is required */ 429ab26458aSBarry Smith if (roworiented) { 430ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 431ab26458aSBarry Smith } else { 432ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 433abef11f7SSatish Balay } 43447513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 43547513183SBarry Smith for (jj=0; jj<bs; jj++) { 43630793edcSSatish Balay *barray++ = *value++; 43747513183SBarry Smith } 43847513183SBarry Smith } 43930793edcSSatish Balay barray -=bs2; 44015b57d14SSatish Balay } 441abef11f7SSatish Balay 442abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 443abef11f7SSatish Balay col = in[j] - cstart; 44493fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 445ab26458aSBarry Smith } 4465ef9f2a5SBarry Smith else if (in[j] < 0) continue; 4472515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 44877431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 449ab26458aSBarry Smith #endif 450ab26458aSBarry Smith else { 451ab26458aSBarry Smith if (mat->was_assembled) { 452ab26458aSBarry Smith if (!baij->colmap) { 453ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 454ab26458aSBarry Smith } 455a5eb4965SSatish Balay 4562515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 457aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 458b24ad042SBarry Smith { PetscInt data; 4590f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 46029bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 461fa46199cSSatish Balay } 46248e59246SSatish Balay #else 46329bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 464a5eb4965SSatish Balay #endif 46548e59246SSatish Balay #endif 466aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 4670f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 468fa46199cSSatish Balay col = (col - 1)/bs; 46948e59246SSatish Balay #else 470a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 47148e59246SSatish Balay #endif 472ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 473ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 474ab26458aSBarry Smith col = in[j]; 475ab26458aSBarry Smith } 476ab26458aSBarry Smith } 477ab26458aSBarry Smith else col = in[j]; 47893fea6afSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_MatScalar(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 479ab26458aSBarry Smith } 480ab26458aSBarry Smith } 481d64ed03dSBarry Smith } else { 482ab26458aSBarry Smith if (!baij->donotstash) { 483ff2fd236SBarry Smith if (roworiented) { 4846fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 485ff2fd236SBarry Smith } else { 4866fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 487ff2fd236SBarry Smith } 488abef11f7SSatish Balay } 489ab26458aSBarry Smith } 490ab26458aSBarry Smith } 4913a40ed3dSBarry Smith PetscFunctionReturn(0); 492ab26458aSBarry Smith } 4936fa18ffdSBarry Smith 4940bdbc534SSatish Balay #define HASH_KEY 0.6180339887 495b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 496b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 497b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 4984a2ae208SSatish Balay #undef __FUNCT__ 4994a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ_HT_MatScalar" 500b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 5010bdbc534SSatish Balay { 5020bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 503273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 504dfbe8321SBarry Smith PetscErrorCode ierr; 505b24ad042SBarry Smith PetscInt i,j,row,col; 506899cda47SBarry Smith PetscInt rstart_orig=mat->rmap.rstart; 507899cda47SBarry Smith PetscInt rend_orig=mat->rmap.rend,Nbs=baij->Nbs; 508899cda47SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap.bs,*HT=baij->ht,idx; 509329f5518SBarry Smith PetscReal tmp; 5103eda8832SBarry Smith MatScalar **HD = baij->hd,value; 5112515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 512b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5134a15367fSSatish Balay #endif 5140bdbc534SSatish Balay 5150bdbc534SSatish Balay PetscFunctionBegin; 5160bdbc534SSatish Balay 5170bdbc534SSatish Balay for (i=0; i<m; i++) { 5182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 51929bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 520899cda47SBarry Smith if (im[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap.N-1); 5210bdbc534SSatish Balay #endif 5220bdbc534SSatish Balay row = im[i]; 523c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 5240bdbc534SSatish Balay for (j=0; j<n; j++) { 5250bdbc534SSatish Balay col = in[j]; 5266fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 527b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 528c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 529c2760754SSatish Balay h1 = HASH(size,key,tmp); 5300bdbc534SSatish Balay 531c2760754SSatish Balay 532c2760754SSatish Balay idx = h1; 5332515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 534187ce0cbSSatish Balay insert_ct++; 535187ce0cbSSatish Balay total_ct++; 536187ce0cbSSatish Balay if (HT[idx] != key) { 537187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 538187ce0cbSSatish Balay if (idx == size) { 539187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 540187ce0cbSSatish Balay if (idx == h1) { 54177431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 542187ce0cbSSatish Balay } 543187ce0cbSSatish Balay } 544187ce0cbSSatish Balay } 545187ce0cbSSatish Balay #else 546c2760754SSatish Balay if (HT[idx] != key) { 547c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 548c2760754SSatish Balay if (idx == size) { 549c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 550c2760754SSatish Balay if (idx == h1) { 55177431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 552c2760754SSatish Balay } 553c2760754SSatish Balay } 554c2760754SSatish Balay } 555187ce0cbSSatish Balay #endif 556c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 557c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 558c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 562ff2fd236SBarry Smith if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 564ff2fd236SBarry Smith } else { 5658798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 5760bdbc534SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT_MatScalar" 579b24ad042SBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT_MatScalar(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const MatScalar v[],InsertMode addv) 5800bdbc534SSatish Balay { 5810bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 582273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 583dfbe8321SBarry Smith PetscErrorCode ierr; 584b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 585899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 586ab715e2cSSatish Balay PetscInt rend=mat->rmap.rend,stepval,bs=mat->rmap.bs,bs2=baij->bs2,nbs2=n*bs2; 587b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 588329f5518SBarry Smith PetscReal tmp; 5893eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 590f15d580aSBarry Smith const MatScalar *v_t,*value; 5912515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 592b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5934a15367fSSatish Balay #endif 5940bdbc534SSatish Balay 595d0a41580SSatish Balay PetscFunctionBegin; 596d0a41580SSatish Balay 5970bdbc534SSatish Balay if (roworiented) { 5980bdbc534SSatish Balay stepval = (n-1)*bs; 5990bdbc534SSatish Balay } else { 6000bdbc534SSatish Balay stepval = (m-1)*bs; 6010bdbc534SSatish Balay } 6020bdbc534SSatish Balay for (i=0; i<m; i++) { 6032515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 60477431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 60577431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 6060bdbc534SSatish Balay #endif 6070bdbc534SSatish Balay row = im[i]; 608ab715e2cSSatish Balay v_t = v + i*nbs2; 609c2760754SSatish Balay if (row >= rstart && row < rend) { 6100bdbc534SSatish Balay for (j=0; j<n; j++) { 6110bdbc534SSatish Balay col = in[j]; 6120bdbc534SSatish Balay 6130bdbc534SSatish Balay /* Look up into the Hash Table */ 614c2760754SSatish Balay key = row*Nbs+col+1; 615c2760754SSatish Balay h1 = HASH(size,key,tmp); 6160bdbc534SSatish Balay 617c2760754SSatish Balay idx = h1; 6182515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 619187ce0cbSSatish Balay total_ct++; 620187ce0cbSSatish Balay insert_ct++; 621187ce0cbSSatish Balay if (HT[idx] != key) { 622187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 623187ce0cbSSatish Balay if (idx == size) { 624187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 625187ce0cbSSatish Balay if (idx == h1) { 62677431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 627187ce0cbSSatish Balay } 628187ce0cbSSatish Balay } 629187ce0cbSSatish Balay } 630187ce0cbSSatish Balay #else 631c2760754SSatish Balay if (HT[idx] != key) { 632c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 633c2760754SSatish Balay if (idx == size) { 634c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 635c2760754SSatish Balay if (idx == h1) { 63677431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 637c2760754SSatish Balay } 638c2760754SSatish Balay } 639c2760754SSatish Balay } 640187ce0cbSSatish Balay #endif 641c2760754SSatish Balay baij_a = HD[idx]; 6420bdbc534SSatish Balay if (roworiented) { 643c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 644187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 645187ce0cbSSatish Balay value = v_t; 646187ce0cbSSatish Balay v_t += bs; 647fef45726SSatish Balay if (addv == ADD_VALUES) { 648c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 649c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 650fef45726SSatish Balay baij_a[jj] += *value++; 651b4cc0f5aSSatish Balay } 652b4cc0f5aSSatish Balay } 653fef45726SSatish Balay } else { 654c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 655c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 656fef45726SSatish Balay baij_a[jj] = *value++; 657fef45726SSatish Balay } 658fef45726SSatish Balay } 659fef45726SSatish Balay } 6600bdbc534SSatish Balay } else { 6610bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 662fef45726SSatish Balay if (addv == ADD_VALUES) { 663b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 6640bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 665fef45726SSatish Balay baij_a[jj] += *value++; 666fef45726SSatish Balay } 667fef45726SSatish Balay } 668fef45726SSatish Balay } else { 669fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 670fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 671fef45726SSatish Balay baij_a[jj] = *value++; 672fef45726SSatish Balay } 673b4cc0f5aSSatish Balay } 6740bdbc534SSatish Balay } 6750bdbc534SSatish Balay } 6760bdbc534SSatish Balay } 6770bdbc534SSatish Balay } else { 6780bdbc534SSatish Balay if (!baij->donotstash) { 6790bdbc534SSatish Balay if (roworiented) { 6808798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6810bdbc534SSatish Balay } else { 6828798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6830bdbc534SSatish Balay } 6840bdbc534SSatish Balay } 6850bdbc534SSatish Balay } 6860bdbc534SSatish Balay } 6872515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 688187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 689187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 690187ce0cbSSatish Balay #endif 6910bdbc534SSatish Balay PetscFunctionReturn(0); 6920bdbc534SSatish Balay } 693133cdb44SSatish Balay 6944a2ae208SSatish Balay #undef __FUNCT__ 6954a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 696b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 697d6de1c52SSatish Balay { 698d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 6996849ba73SBarry Smith PetscErrorCode ierr; 700899cda47SBarry Smith PetscInt bs=mat->rmap.bs,i,j,bsrstart = mat->rmap.rstart,bsrend = mat->rmap.rend; 701899cda47SBarry Smith PetscInt bscstart = mat->cmap.rstart,bscend = mat->cmap.rend,row,col,data; 702d6de1c52SSatish Balay 703133cdb44SSatish Balay PetscFunctionBegin; 704d6de1c52SSatish Balay for (i=0; i<m; i++) { 70577431f27SBarry Smith if (idxm[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]); 706899cda47SBarry Smith if (idxm[i] >= mat->rmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap.N-1); 707d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 708d6de1c52SSatish Balay row = idxm[i] - bsrstart; 709d6de1c52SSatish Balay for (j=0; j<n; j++) { 71077431f27SBarry Smith if (idxn[j] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); 711899cda47SBarry Smith if (idxn[j] >= mat->cmap.N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap.N-1); 712d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 713d6de1c52SSatish Balay col = idxn[j] - bscstart; 71498dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 715d64ed03dSBarry Smith } else { 716905e6a2fSBarry Smith if (!baij->colmap) { 717905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 718905e6a2fSBarry Smith } 719aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 7200f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 721fa46199cSSatish Balay data --; 72248e59246SSatish Balay #else 72348e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 72448e59246SSatish Balay #endif 72548e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 726d9d09a02SSatish Balay else { 72748e59246SSatish Balay col = data + idxn[j]%bs; 72898dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 729d6de1c52SSatish Balay } 730d6de1c52SSatish Balay } 731d6de1c52SSatish Balay } 732d64ed03dSBarry Smith } else { 73329bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 734d6de1c52SSatish Balay } 735d6de1c52SSatish Balay } 7363a40ed3dSBarry Smith PetscFunctionReturn(0); 737d6de1c52SSatish Balay } 738d6de1c52SSatish Balay 7394a2ae208SSatish Balay #undef __FUNCT__ 7404a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 741dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 742d6de1c52SSatish Balay { 743d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 744d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 745dfbe8321SBarry Smith PetscErrorCode ierr; 746899cda47SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap.bs,nz,row,col; 747329f5518SBarry Smith PetscReal sum = 0.0; 7483eda8832SBarry Smith MatScalar *v; 749d6de1c52SSatish Balay 750d64ed03dSBarry Smith PetscFunctionBegin; 751d6de1c52SSatish Balay if (baij->size == 1) { 752064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 753d6de1c52SSatish Balay } else { 754d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 755d6de1c52SSatish Balay v = amat->a; 7568a62d963SHong Zhang nz = amat->nz*bs2; 7578a62d963SHong Zhang for (i=0; i<nz; i++) { 758aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 759329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 760d6de1c52SSatish Balay #else 761d6de1c52SSatish Balay sum += (*v)*(*v); v++; 762d6de1c52SSatish Balay #endif 763d6de1c52SSatish Balay } 764d6de1c52SSatish Balay v = bmat->a; 7658a62d963SHong Zhang nz = bmat->nz*bs2; 7668a62d963SHong Zhang for (i=0; i<nz; i++) { 767aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 768329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 769d6de1c52SSatish Balay #else 770d6de1c52SSatish Balay sum += (*v)*(*v); v++; 771d6de1c52SSatish Balay #endif 772d6de1c52SSatish Balay } 773064f8208SBarry Smith ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 774064f8208SBarry Smith *nrm = sqrt(*nrm); 7758a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7768a62d963SHong Zhang PetscReal *tmp,*tmp2; 777899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 778899cda47SBarry Smith ierr = PetscMalloc((2*mat->cmap.N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 779899cda47SBarry Smith tmp2 = tmp + mat->cmap.N; 780899cda47SBarry Smith ierr = PetscMemzero(tmp,mat->cmap.N*sizeof(PetscReal));CHKERRQ(ierr); 7818a62d963SHong Zhang v = amat->a; jj = amat->j; 7828a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 7838a62d963SHong Zhang for (j=0; j<bs; j++){ 7848a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 7858a62d963SHong Zhang for (row=0; row<bs; row++){ 7868a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7878a62d963SHong Zhang } 7888a62d963SHong Zhang } 7898a62d963SHong Zhang jj++; 7908a62d963SHong Zhang } 7918a62d963SHong Zhang v = bmat->a; jj = bmat->j; 7928a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 7938a62d963SHong Zhang for (j=0; j<bs; j++){ 7948a62d963SHong Zhang col = bs*garray[*jj] + j; 7958a62d963SHong Zhang for (row=0; row<bs; row++){ 7968a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7978a62d963SHong Zhang } 7988a62d963SHong Zhang } 7998a62d963SHong Zhang jj++; 8008a62d963SHong Zhang } 801899cda47SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap.N,MPIU_REAL,MPI_SUM,mat->comm);CHKERRQ(ierr); 8028a62d963SHong Zhang *nrm = 0.0; 803899cda47SBarry Smith for (j=0; j<mat->cmap.N; j++) { 8048a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 8058a62d963SHong Zhang } 8068a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 8078a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 808577dd1f9SKris Buschelman PetscReal *sums; 809577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 8108a62d963SHong Zhang sum = 0.0; 8118a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 8128a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 8138a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 8148a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 8158a62d963SHong Zhang for (i=0; i<nz; i++) { 8168a62d963SHong Zhang for (col=0; col<bs; col++){ 8178a62d963SHong Zhang for (row=0; row<bs; row++){ 8188a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 8198a62d963SHong Zhang } 8208a62d963SHong Zhang } 8218a62d963SHong Zhang } 8228a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 8238a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 8248a62d963SHong Zhang for (i=0; i<nz; i++) { 8258a62d963SHong Zhang for (col=0; col<bs; col++){ 8268a62d963SHong Zhang for (row=0; row<bs; row++){ 8278a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 8288a62d963SHong Zhang } 8298a62d963SHong Zhang } 8308a62d963SHong Zhang } 8318a62d963SHong Zhang for (row=0; row<bs; row++){ 8328a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 8338a62d963SHong Zhang } 8348a62d963SHong Zhang } 8358a62d963SHong Zhang ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,mat->comm);CHKERRQ(ierr); 836577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 837d64ed03dSBarry Smith } else { 83829bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 839d6de1c52SSatish Balay } 840d64ed03dSBarry Smith } 8413a40ed3dSBarry Smith PetscFunctionReturn(0); 842d6de1c52SSatish Balay } 84357b952d6SSatish Balay 844fef45726SSatish Balay /* 845fef45726SSatish Balay Creates the hash table, and sets the table 846fef45726SSatish Balay This table is created only once. 847fef45726SSatish Balay If new entried need to be added to the matrix 848fef45726SSatish Balay then the hash table has to be destroyed and 849fef45726SSatish Balay recreated. 850fef45726SSatish Balay */ 8514a2ae208SSatish Balay #undef __FUNCT__ 8524a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 853dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 854596b8d2eSBarry Smith { 855596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 856596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 857596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 858b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 8596849ba73SBarry Smith PetscErrorCode ierr; 860899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 861899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 862b24ad042SBarry Smith PetscInt *HT,key; 8633eda8832SBarry Smith MatScalar **HD; 864329f5518SBarry Smith PetscReal tmp; 8656cf91177SBarry Smith #if defined(PETSC_USE_INFO) 866b24ad042SBarry Smith PetscInt ct=0,max=0; 8674a15367fSSatish Balay #endif 868fef45726SSatish Balay 869d64ed03dSBarry Smith PetscFunctionBegin; 870b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 8710bdbc534SSatish Balay size = baij->ht_size; 872fef45726SSatish Balay 8730bdbc534SSatish Balay if (baij->ht) { 8740bdbc534SSatish Balay PetscFunctionReturn(0); 875596b8d2eSBarry Smith } 8760bdbc534SSatish Balay 877fef45726SSatish Balay /* Allocate Memory for Hash Table */ 878b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 879b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 880b9e4cc15SSatish Balay HD = baij->hd; 881a07cd24cSSatish Balay HT = baij->ht; 882b9e4cc15SSatish Balay 883b9e4cc15SSatish Balay 884b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 8850bdbc534SSatish Balay 886596b8d2eSBarry Smith 887596b8d2eSBarry Smith /* Loop Over A */ 8880bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 889596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8900bdbc534SSatish Balay row = i+rstart; 8910bdbc534SSatish Balay col = aj[j]+cstart; 892596b8d2eSBarry Smith 893187ce0cbSSatish Balay key = row*Nbs + col + 1; 894c2760754SSatish Balay h1 = HASH(size,key,tmp); 8950bdbc534SSatish Balay for (k=0; k<size; k++){ 896958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8970bdbc534SSatish Balay HT[(h1+k)%size] = key; 8980bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 899596b8d2eSBarry Smith break; 9006cf91177SBarry Smith #if defined(PETSC_USE_INFO) 901187ce0cbSSatish Balay } else { 902187ce0cbSSatish Balay ct++; 903187ce0cbSSatish Balay #endif 904596b8d2eSBarry Smith } 905187ce0cbSSatish Balay } 9066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 907187ce0cbSSatish Balay if (k> max) max = k; 908187ce0cbSSatish Balay #endif 909596b8d2eSBarry Smith } 910596b8d2eSBarry Smith } 911596b8d2eSBarry Smith /* Loop Over B */ 9120bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 913596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 9140bdbc534SSatish Balay row = i+rstart; 9150bdbc534SSatish Balay col = garray[bj[j]]; 916187ce0cbSSatish Balay key = row*Nbs + col + 1; 917c2760754SSatish Balay h1 = HASH(size,key,tmp); 9180bdbc534SSatish Balay for (k=0; k<size; k++){ 919958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 9200bdbc534SSatish Balay HT[(h1+k)%size] = key; 9210bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 922596b8d2eSBarry Smith break; 9236cf91177SBarry Smith #if defined(PETSC_USE_INFO) 924187ce0cbSSatish Balay } else { 925187ce0cbSSatish Balay ct++; 926187ce0cbSSatish Balay #endif 927596b8d2eSBarry Smith } 928187ce0cbSSatish Balay } 9296cf91177SBarry Smith #if defined(PETSC_USE_INFO) 930187ce0cbSSatish Balay if (k> max) max = k; 931187ce0cbSSatish Balay #endif 932596b8d2eSBarry Smith } 933596b8d2eSBarry Smith } 934596b8d2eSBarry Smith 935596b8d2eSBarry Smith /* Print Summary */ 9366cf91177SBarry Smith #if defined(PETSC_USE_INFO) 937c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 938596b8d2eSBarry Smith if (HT[i]) {j++;} 939c38d4ed2SBarry Smith } 940ae15b995SBarry Smith ierr = PetscInfo2(0,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 941187ce0cbSSatish Balay #endif 9423a40ed3dSBarry Smith PetscFunctionReturn(0); 943596b8d2eSBarry Smith } 94457b952d6SSatish Balay 9454a2ae208SSatish Balay #undef __FUNCT__ 9464a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 947dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 948bbb85fb3SSatish Balay { 949bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 950dfbe8321SBarry Smith PetscErrorCode ierr; 951b24ad042SBarry Smith PetscInt nstash,reallocs; 952bbb85fb3SSatish Balay InsertMode addv; 953bbb85fb3SSatish Balay 954bbb85fb3SSatish Balay PetscFunctionBegin; 955bbb85fb3SSatish Balay if (baij->donotstash) { 956bbb85fb3SSatish Balay PetscFunctionReturn(0); 957bbb85fb3SSatish Balay } 958bbb85fb3SSatish Balay 959bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 960bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 961bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 96229bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 963bbb85fb3SSatish Balay } 964bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 965bbb85fb3SSatish Balay 966899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->stash,mat->rmap.range);CHKERRQ(ierr); 967899cda47SBarry Smith ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rangebs);CHKERRQ(ierr); 9688798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 969ae15b995SBarry Smith ierr = PetscInfo2(0,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 97046680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 971ae15b995SBarry Smith ierr = PetscInfo2(0,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 972bbb85fb3SSatish Balay PetscFunctionReturn(0); 973bbb85fb3SSatish Balay } 974bbb85fb3SSatish Balay 9754a2ae208SSatish Balay #undef __FUNCT__ 9764a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 977dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 978bbb85fb3SSatish Balay { 979bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 98091c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 9816849ba73SBarry Smith PetscErrorCode ierr; 982b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 983b24ad042SBarry Smith PetscInt *row,*col,other_disassembled; 9847c922b88SBarry Smith PetscTruth r1,r2,r3; 9853eda8832SBarry Smith MatScalar *val; 986bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 987b24ad042SBarry Smith PetscMPIInt n; 988bbb85fb3SSatish Balay 98991c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 990bbb85fb3SSatish Balay PetscFunctionBegin; 991bbb85fb3SSatish Balay if (!baij->donotstash) { 992a2d1c673SSatish Balay while (1) { 9938798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 994a2d1c673SSatish Balay if (!flg) break; 995a2d1c673SSatish Balay 996bbb85fb3SSatish Balay for (i=0; i<n;) { 997bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 998bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 999bbb85fb3SSatish Balay if (j < n) ncols = j-i; 1000bbb85fb3SSatish Balay else ncols = n-i; 1001bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 100293fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 1003bbb85fb3SSatish Balay i = j; 1004bbb85fb3SSatish Balay } 1005bbb85fb3SSatish Balay } 10068798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 1007a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 1008a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 1009a2d1c673SSatish Balay restore the original flags */ 1010a2d1c673SSatish Balay r1 = baij->roworiented; 1011a2d1c673SSatish Balay r2 = a->roworiented; 101291c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 10137c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 10147c922b88SBarry Smith a->roworiented = PETSC_FALSE; 101591c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 1016a2d1c673SSatish Balay while (1) { 10178798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 1018a2d1c673SSatish Balay if (!flg) break; 1019a2d1c673SSatish Balay 1020a2d1c673SSatish Balay for (i=0; i<n;) { 1021a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 1022a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 1023a2d1c673SSatish Balay if (j < n) ncols = j-i; 1024a2d1c673SSatish Balay else ncols = n-i; 102593fea6afSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ_MatScalar(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 1026a2d1c673SSatish Balay i = j; 1027a2d1c673SSatish Balay } 1028a2d1c673SSatish Balay } 10298798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 1030a2d1c673SSatish Balay baij->roworiented = r1; 1031a2d1c673SSatish Balay a->roworiented = r2; 103291c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 1033bbb85fb3SSatish Balay } 1034bbb85fb3SSatish Balay 1035bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 1036bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 1037bbb85fb3SSatish Balay 1038bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 1039bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 1040bbb85fb3SSatish Balay /* 1041bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 1042bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 1043bbb85fb3SSatish Balay */ 1044bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 1045bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 1046bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 1047bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 1048bbb85fb3SSatish Balay } 1049bbb85fb3SSatish Balay } 1050bbb85fb3SSatish Balay 1051bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 1052bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 1053bbb85fb3SSatish Balay } 105491c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 1055bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 1056bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 1057bbb85fb3SSatish Balay 10586cf91177SBarry Smith #if defined(PETSC_USE_INFO) 1059bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 1060ae15b995SBarry Smith ierr = PetscInfo1(0,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 1061bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1062bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1063bbb85fb3SSatish Balay } 1064bbb85fb3SSatish Balay #endif 1065bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1066bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 1067bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1068bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1069bbb85fb3SSatish Balay } 1070bbb85fb3SSatish Balay 1071606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 1072606d414cSSatish Balay baij->rowvalues = 0; 1073bbb85fb3SSatish Balay PetscFunctionReturn(0); 1074bbb85fb3SSatish Balay } 107557b952d6SSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 10786849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 107957b952d6SSatish Balay { 108057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1081dfbe8321SBarry Smith PetscErrorCode ierr; 1082b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 1083899cda47SBarry Smith PetscInt bs = mat->rmap.bs; 108432077d6dSBarry Smith PetscTruth iascii,isdraw; 1085b0a32e0cSBarry Smith PetscViewer sviewer; 1086f3ef73ceSBarry Smith PetscViewerFormat format; 108757b952d6SSatish Balay 1088d64ed03dSBarry Smith PetscFunctionBegin; 108932077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1090fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 109132077d6dSBarry Smith if (iascii) { 1092b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1093456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10944e220ebcSLois Curfman McInnes MatInfo info; 1095d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 1096d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 109777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 1098899cda47SBarry Smith rank,mat->rmap.N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 1099899cda47SBarry Smith mat->rmap.bs,(PetscInt)info.memory);CHKERRQ(ierr); 1100d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 110177431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1102d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 110377431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 1104b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 110507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 110657b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 11073a40ed3dSBarry Smith PetscFunctionReturn(0); 1108fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 110977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 11103a40ed3dSBarry Smith PetscFunctionReturn(0); 111104929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 111204929863SHong Zhang PetscFunctionReturn(0); 111357b952d6SSatish Balay } 111457b952d6SSatish Balay } 111557b952d6SSatish Balay 11160f5bd95cSBarry Smith if (isdraw) { 1117b0a32e0cSBarry Smith PetscDraw draw; 111857b952d6SSatish Balay PetscTruth isnull; 1119b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1120b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 112157b952d6SSatish Balay } 112257b952d6SSatish Balay 112357b952d6SSatish Balay if (size == 1) { 1124873048abSBarry Smith ierr = PetscObjectSetName((PetscObject)baij->A,mat->name);CHKERRQ(ierr); 112557b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1126d64ed03dSBarry Smith } else { 112757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 112857b952d6SSatish Balay Mat A; 112957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1130899cda47SBarry Smith PetscInt M = mat->rmap.N,N = mat->cmap.N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 11313eda8832SBarry Smith MatScalar *a; 113257b952d6SSatish Balay 1133f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1134f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 1135f69a0ea3SMatthew Knepley ierr = MatCreate(mat->comm,&A);CHKERRQ(ierr); 113657b952d6SSatish Balay if (!rank) { 1137f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1138d64ed03dSBarry Smith } else { 1139f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 114057b952d6SSatish Balay } 1141f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1142899cda47SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 114352e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 114457b952d6SSatish Balay 114557b952d6SSatish Balay /* copy over the A part */ 114657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 114757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1148b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 114957b952d6SSatish Balay 115057b952d6SSatish Balay for (i=0; i<mbs; i++) { 1151899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 115257b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 115357b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1154899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 115557b952d6SSatish Balay for (k=0; k<bs; k++) { 115693fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1157cee3aa6bSSatish Balay col++; a += bs; 115857b952d6SSatish Balay } 115957b952d6SSatish Balay } 116057b952d6SSatish Balay } 116157b952d6SSatish Balay /* copy over the B part */ 116257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 116357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 116457b952d6SSatish Balay for (i=0; i<mbs; i++) { 1165899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 116657b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 116757b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 116857b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 116957b952d6SSatish Balay for (k=0; k<bs; k++) { 117093fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1171cee3aa6bSSatish Balay col++; a += bs; 117257b952d6SSatish Balay } 117357b952d6SSatish Balay } 117457b952d6SSatish Balay } 1175606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11766d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11776d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 117855843e3eSBarry Smith /* 117955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1180b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 118155843e3eSBarry Smith */ 1182b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1183f14a1c24SBarry Smith if (!rank) { 1184e36acaf3SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,mat->name);CHKERRQ(ierr); 11856831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 118657b952d6SSatish Balay } 1187b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 118857b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 118957b952d6SSatish Balay } 11903a40ed3dSBarry Smith PetscFunctionReturn(0); 119157b952d6SSatish Balay } 119257b952d6SSatish Balay 11934a2ae208SSatish Balay #undef __FUNCT__ 11944a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1195dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 119657b952d6SSatish Balay { 1197dfbe8321SBarry Smith PetscErrorCode ierr; 119832077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 119957b952d6SSatish Balay 1200d64ed03dSBarry Smith PetscFunctionBegin; 120132077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1202fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1203b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1204fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 120532077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 12067b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 12075cd90555SBarry Smith } else { 120879a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 120957b952d6SSatish Balay } 12103a40ed3dSBarry Smith PetscFunctionReturn(0); 121157b952d6SSatish Balay } 121257b952d6SSatish Balay 12134a2ae208SSatish Balay #undef __FUNCT__ 12144a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1215dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 121679bdfe76SSatish Balay { 121779bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1218dfbe8321SBarry Smith PetscErrorCode ierr; 121979bdfe76SSatish Balay 1220d64ed03dSBarry Smith PetscFunctionBegin; 1221aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1222899cda47SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap.N,mat->cmap.N); 122379bdfe76SSatish Balay #endif 12248798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 12258798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 122679bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 122779bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1228aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 12299c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 123048e59246SSatish Balay #else 123105b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 123248e59246SSatish Balay #endif 123305b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1234606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1235606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 123605b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 123705b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 123805b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 12396fa18ffdSBarry Smith #if defined(PETSC_USE_MAT_SINGLE) 124005b42c5fSBarry Smith ierr = PetscFree(baij->setvaluescopy);CHKERRQ(ierr); 12416fa18ffdSBarry Smith #endif 1242899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1243606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1244901853e0SKris Buschelman 1245dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1246901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1247901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1248901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1249901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1250aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1251901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1252901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 12533a40ed3dSBarry Smith PetscFunctionReturn(0); 125479bdfe76SSatish Balay } 125579bdfe76SSatish Balay 12564a2ae208SSatish Balay #undef __FUNCT__ 12574a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1258dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1259cee3aa6bSSatish Balay { 1260cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1261dfbe8321SBarry Smith PetscErrorCode ierr; 1262b24ad042SBarry Smith PetscInt nt; 1263cee3aa6bSSatish Balay 1264d64ed03dSBarry Smith PetscFunctionBegin; 1265e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1266899cda47SBarry Smith if (nt != A->cmap.n) { 126729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 126847b4a8eaSLois Curfman McInnes } 1269e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1270899cda47SBarry Smith if (nt != A->rmap.n) { 127129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 127247b4a8eaSLois Curfman McInnes } 1273ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1274f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1275ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1276f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 12773a40ed3dSBarry Smith PetscFunctionReturn(0); 1278cee3aa6bSSatish Balay } 1279cee3aa6bSSatish Balay 12804a2ae208SSatish Balay #undef __FUNCT__ 12814a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1282dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1283cee3aa6bSSatish Balay { 1284cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1285dfbe8321SBarry Smith PetscErrorCode ierr; 1286d64ed03dSBarry Smith 1287d64ed03dSBarry Smith PetscFunctionBegin; 1288ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1289f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1290ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1291f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 12923a40ed3dSBarry Smith PetscFunctionReturn(0); 1293cee3aa6bSSatish Balay } 1294cee3aa6bSSatish Balay 12954a2ae208SSatish Balay #undef __FUNCT__ 12964a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1297dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1298cee3aa6bSSatish Balay { 1299cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1300dfbe8321SBarry Smith PetscErrorCode ierr; 1301a5ff213dSBarry Smith PetscTruth merged; 1302cee3aa6bSSatish Balay 1303d64ed03dSBarry Smith PetscFunctionBegin; 1304a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1305cee3aa6bSSatish Balay /* do nondiagonal part */ 13067c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1307a5ff213dSBarry Smith if (!merged) { 1308cee3aa6bSSatish Balay /* send it on its way */ 1309ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1310cee3aa6bSSatish Balay /* do local part */ 13117c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1312cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1313a5ff213dSBarry Smith /* inserted in yy until the next line */ 1314ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1315a5ff213dSBarry Smith } else { 1316a5ff213dSBarry Smith /* do local part */ 1317a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1318a5ff213dSBarry Smith /* send it on its way */ 1319ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1320a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1321ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1322a5ff213dSBarry Smith } 13233a40ed3dSBarry Smith PetscFunctionReturn(0); 1324cee3aa6bSSatish Balay } 1325cee3aa6bSSatish Balay 13264a2ae208SSatish Balay #undef __FUNCT__ 13274a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1328dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1329cee3aa6bSSatish Balay { 1330cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1331dfbe8321SBarry Smith PetscErrorCode ierr; 1332cee3aa6bSSatish Balay 1333d64ed03dSBarry Smith PetscFunctionBegin; 1334cee3aa6bSSatish Balay /* do nondiagonal part */ 13357c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1336cee3aa6bSSatish Balay /* send it on its way */ 1337ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1338cee3aa6bSSatish Balay /* do local part */ 13397c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1340cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1341cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1342cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1343ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 13443a40ed3dSBarry Smith PetscFunctionReturn(0); 1345cee3aa6bSSatish Balay } 1346cee3aa6bSSatish Balay 1347cee3aa6bSSatish Balay /* 1348cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1349cee3aa6bSSatish Balay diagonal block 1350cee3aa6bSSatish Balay */ 13514a2ae208SSatish Balay #undef __FUNCT__ 13524a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1353dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1354cee3aa6bSSatish Balay { 1355cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1356dfbe8321SBarry Smith PetscErrorCode ierr; 1357d64ed03dSBarry Smith 1358d64ed03dSBarry Smith PetscFunctionBegin; 1359899cda47SBarry Smith if (A->rmap.N != A->cmap.N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 13603a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 13613a40ed3dSBarry Smith PetscFunctionReturn(0); 1362cee3aa6bSSatish Balay } 1363cee3aa6bSSatish Balay 13644a2ae208SSatish Balay #undef __FUNCT__ 13654a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1366f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1367cee3aa6bSSatish Balay { 1368cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1369dfbe8321SBarry Smith PetscErrorCode ierr; 1370d64ed03dSBarry Smith 1371d64ed03dSBarry Smith PetscFunctionBegin; 1372f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1373f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 13743a40ed3dSBarry Smith PetscFunctionReturn(0); 1375cee3aa6bSSatish Balay } 1376026e39d0SSatish Balay 13774a2ae208SSatish Balay #undef __FUNCT__ 13784a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1379b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1380acdf5bf4SSatish Balay { 1381acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 138287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 13836849ba73SBarry Smith PetscErrorCode ierr; 1384899cda47SBarry Smith PetscInt bs = matin->rmap.bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1385899cda47SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap.rstart,brend = matin->rmap.rend; 1386899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1387acdf5bf4SSatish Balay 1388d64ed03dSBarry Smith PetscFunctionBegin; 1389abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1390acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1391acdf5bf4SSatish Balay 1392acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1393acdf5bf4SSatish Balay /* 1394acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1395acdf5bf4SSatish Balay */ 1396acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1397b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1398bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1399acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1400acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1401acdf5bf4SSatish Balay } 1402b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1403b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1404acdf5bf4SSatish Balay } 1405acdf5bf4SSatish Balay 140629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1407d9d09a02SSatish Balay lrow = row - brstart; 1408acdf5bf4SSatish Balay 1409acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1410acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1411acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1412f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1413f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1414acdf5bf4SSatish Balay nztot = nzA + nzB; 1415acdf5bf4SSatish Balay 1416acdf5bf4SSatish Balay cmap = mat->garray; 1417acdf5bf4SSatish Balay if (v || idx) { 1418acdf5bf4SSatish Balay if (nztot) { 1419acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1420b24ad042SBarry Smith PetscInt imark = -1; 1421acdf5bf4SSatish Balay if (v) { 1422acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1423acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1424d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1425acdf5bf4SSatish Balay else break; 1426acdf5bf4SSatish Balay } 1427acdf5bf4SSatish Balay imark = i; 1428acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1429acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1430acdf5bf4SSatish Balay } 1431acdf5bf4SSatish Balay if (idx) { 1432acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1433acdf5bf4SSatish Balay if (imark > -1) { 1434acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1435bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1436acdf5bf4SSatish Balay } 1437acdf5bf4SSatish Balay } else { 1438acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1439d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1440d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1441acdf5bf4SSatish Balay else break; 1442acdf5bf4SSatish Balay } 1443acdf5bf4SSatish Balay imark = i; 1444acdf5bf4SSatish Balay } 1445d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1446d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1447acdf5bf4SSatish Balay } 1448d64ed03dSBarry Smith } else { 1449d212a18eSSatish Balay if (idx) *idx = 0; 1450d212a18eSSatish Balay if (v) *v = 0; 1451d212a18eSSatish Balay } 1452acdf5bf4SSatish Balay } 1453acdf5bf4SSatish Balay *nz = nztot; 1454f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1455f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 14563a40ed3dSBarry Smith PetscFunctionReturn(0); 1457acdf5bf4SSatish Balay } 1458acdf5bf4SSatish Balay 14594a2ae208SSatish Balay #undef __FUNCT__ 14604a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1461b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1462acdf5bf4SSatish Balay { 1463acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1464d64ed03dSBarry Smith 1465d64ed03dSBarry Smith PetscFunctionBegin; 1466abc0a331SBarry Smith if (!baij->getrowactive) { 146729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1468acdf5bf4SSatish Balay } 1469acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 14703a40ed3dSBarry Smith PetscFunctionReturn(0); 1471acdf5bf4SSatish Balay } 1472acdf5bf4SSatish Balay 14734a2ae208SSatish Balay #undef __FUNCT__ 14744a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1475dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 147658667388SSatish Balay { 147758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1478dfbe8321SBarry Smith PetscErrorCode ierr; 1479d64ed03dSBarry Smith 1480d64ed03dSBarry Smith PetscFunctionBegin; 148158667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 148258667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 14833a40ed3dSBarry Smith PetscFunctionReturn(0); 148458667388SSatish Balay } 14850ac07820SSatish Balay 14864a2ae208SSatish Balay #undef __FUNCT__ 14874a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1488dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 14890ac07820SSatish Balay { 14904e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 14914e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1492dfbe8321SBarry Smith PetscErrorCode ierr; 1493329f5518SBarry Smith PetscReal isend[5],irecv[5]; 14940ac07820SSatish Balay 1495d64ed03dSBarry Smith PetscFunctionBegin; 1496899cda47SBarry Smith info->block_size = (PetscReal)matin->rmap.bs; 14974e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 14980e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1499de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 15004e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 15010e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1502de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 15030ac07820SSatish Balay if (flag == MAT_LOCAL) { 15044e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 15054e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 15064e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 15074e220ebcSLois Curfman McInnes info->memory = isend[3]; 15084e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 15090ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1510d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,matin->comm);CHKERRQ(ierr); 15114e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15124e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15134e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15144e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15154e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 15160ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1517d7d1e502SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,matin->comm);CHKERRQ(ierr); 15184e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 15194e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 15204e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 15214e220ebcSLois Curfman McInnes info->memory = irecv[3]; 15224e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1523d41123aaSBarry Smith } else { 152477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 15250ac07820SSatish Balay } 1526899cda47SBarry Smith info->rows_global = (PetscReal)A->rmap.N; 1527899cda47SBarry Smith info->columns_global = (PetscReal)A->cmap.N; 1528899cda47SBarry Smith info->rows_local = (PetscReal)A->rmap.N; 1529899cda47SBarry Smith info->columns_local = (PetscReal)A->cmap.N; 15304e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 15314e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 15324e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 15333a40ed3dSBarry Smith PetscFunctionReturn(0); 15340ac07820SSatish Balay } 15350ac07820SSatish Balay 15364a2ae208SSatish Balay #undef __FUNCT__ 15374a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1538dfbe8321SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op) 153958667388SSatish Balay { 154058667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1541dfbe8321SBarry Smith PetscErrorCode ierr; 154258667388SSatish Balay 1543d64ed03dSBarry Smith PetscFunctionBegin; 154412c028f9SKris Buschelman switch (op) { 154512c028f9SKris Buschelman case MAT_NO_NEW_NONZERO_LOCATIONS: 154612c028f9SKris Buschelman case MAT_YES_NEW_NONZERO_LOCATIONS: 154712c028f9SKris Buschelman case MAT_COLUMNS_UNSORTED: 154812c028f9SKris Buschelman case MAT_COLUMNS_SORTED: 154912c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 155012c028f9SKris Buschelman case MAT_KEEP_ZEROED_ROWS: 155112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 155298305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 155398305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 155412c028f9SKris Buschelman break; 155512c028f9SKris Buschelman case MAT_ROW_ORIENTED: 15567c922b88SBarry Smith a->roworiented = PETSC_TRUE; 155798305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 155898305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 155912c028f9SKris Buschelman break; 156012c028f9SKris Buschelman case MAT_ROWS_SORTED: 156112c028f9SKris Buschelman case MAT_ROWS_UNSORTED: 156212c028f9SKris Buschelman case MAT_YES_NEW_DIAGONALS: 1563290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 156412c028f9SKris Buschelman break; 156512c028f9SKris Buschelman case MAT_COLUMN_ORIENTED: 15667c922b88SBarry Smith a->roworiented = PETSC_FALSE; 156798305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 156898305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 156912c028f9SKris Buschelman break; 157012c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 15717c922b88SBarry Smith a->donotstash = PETSC_TRUE; 157212c028f9SKris Buschelman break; 157312c028f9SKris Buschelman case MAT_NO_NEW_DIAGONALS: 157429bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MAT_NO_NEW_DIAGONALS"); 157512c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 15767c922b88SBarry Smith a->ht_flag = PETSC_TRUE; 157712c028f9SKris Buschelman break; 157877e54ba9SKris Buschelman case MAT_SYMMETRIC: 157977e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 15802188ac68SBarry Smith case MAT_HERMITIAN: 15812188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 15822188ac68SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 15832188ac68SBarry Smith break; 15849a4540c5SBarry Smith case MAT_NOT_SYMMETRIC: 15859a4540c5SBarry Smith case MAT_NOT_STRUCTURALLY_SYMMETRIC: 15869a4540c5SBarry Smith case MAT_NOT_HERMITIAN: 15879a4540c5SBarry Smith case MAT_NOT_SYMMETRY_ETERNAL: 1588290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 158977e54ba9SKris Buschelman break; 159012c028f9SKris Buschelman default: 1591ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1592d64ed03dSBarry Smith } 15933a40ed3dSBarry Smith PetscFunctionReturn(0); 159458667388SSatish Balay } 159558667388SSatish Balay 15964a2ae208SSatish Balay #undef __FUNCT__ 15974a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1598dfbe8321SBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,Mat *matout) 15990ac07820SSatish Balay { 16000ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 16010ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 16020ac07820SSatish Balay Mat B; 1603dfbe8321SBarry Smith PetscErrorCode ierr; 1604899cda47SBarry Smith PetscInt M=A->rmap.N,N=A->cmap.N,*ai,*aj,i,*rvals,j,k,col; 1605899cda47SBarry Smith PetscInt bs=A->rmap.bs,mbs=baij->mbs; 16063eda8832SBarry Smith MatScalar *a; 16070ac07820SSatish Balay 1608d64ed03dSBarry Smith PetscFunctionBegin; 160929bbc08cSBarry Smith if (!matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1610f69a0ea3SMatthew Knepley ierr = MatCreate(A->comm,&B);CHKERRQ(ierr); 1611899cda47SBarry Smith ierr = MatSetSizes(B,A->cmap.n,A->rmap.n,N,M);CHKERRQ(ierr); 1612f204ca49SKris Buschelman ierr = MatSetType(B,A->type_name);CHKERRQ(ierr); 1613899cda47SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap.bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 16140ac07820SSatish Balay 16150ac07820SSatish Balay /* copy over the A part */ 16160ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 16170ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1618b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 16190ac07820SSatish Balay 16200ac07820SSatish Balay for (i=0; i<mbs; i++) { 1621899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16220ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16230ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1624899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 16250ac07820SSatish Balay for (k=0; k<bs; k++) { 162693fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16270ac07820SSatish Balay col++; a += bs; 16280ac07820SSatish Balay } 16290ac07820SSatish Balay } 16300ac07820SSatish Balay } 16310ac07820SSatish Balay /* copy over the B part */ 16320ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 16330ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 16340ac07820SSatish Balay for (i=0; i<mbs; i++) { 1635899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 16360ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 16370ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 16380ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 16390ac07820SSatish Balay for (k=0; k<bs; k++) { 164093fea6afSBarry Smith ierr = MatSetValues_MPIBAIJ_MatScalar(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 16410ac07820SSatish Balay col++; a += bs; 16420ac07820SSatish Balay } 16430ac07820SSatish Balay } 16440ac07820SSatish Balay } 1645606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 16460ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16470ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16480ac07820SSatish Balay 16497c922b88SBarry Smith if (matout) { 16500ac07820SSatish Balay *matout = B; 16510ac07820SSatish Balay } else { 1652273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 16530ac07820SSatish Balay } 16543a40ed3dSBarry Smith PetscFunctionReturn(0); 16550ac07820SSatish Balay } 16560e95ebc0SSatish Balay 16574a2ae208SSatish Balay #undef __FUNCT__ 16584a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1659dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 16600e95ebc0SSatish Balay { 166136c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 166236c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1663dfbe8321SBarry Smith PetscErrorCode ierr; 1664b24ad042SBarry Smith PetscInt s1,s2,s3; 16650e95ebc0SSatish Balay 1666d64ed03dSBarry Smith PetscFunctionBegin; 166736c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 166836c4a09eSSatish Balay if (rr) { 166936c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 167029bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 167136c4a09eSSatish Balay /* Overlap communication with computation. */ 1672ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 167336c4a09eSSatish Balay } 16740e95ebc0SSatish Balay if (ll) { 16750e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 167629bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1677a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 16780e95ebc0SSatish Balay } 167936c4a09eSSatish Balay /* scale the diagonal block */ 168036c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 168136c4a09eSSatish Balay 168236c4a09eSSatish Balay if (rr) { 168336c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1684ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1685a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 168636c4a09eSSatish Balay } 168736c4a09eSSatish Balay 16883a40ed3dSBarry Smith PetscFunctionReturn(0); 16890e95ebc0SSatish Balay } 16900e95ebc0SSatish Balay 16914a2ae208SSatish Balay #undef __FUNCT__ 16924a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1693f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 16940ac07820SSatish Balay { 16950ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 16966849ba73SBarry Smith PetscErrorCode ierr; 1697b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1698899cda47SBarry Smith PetscInt i,*owners = A->rmap.range; 1699b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1700b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 17016543fbbaSBarry Smith PetscInt *rvalues,tag = A->tag,count,base,slen,*source,lastidx = -1; 1702357c27ecSBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap.rstart; 17030ac07820SSatish Balay MPI_Comm comm = A->comm; 17040ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 17050ac07820SSatish Balay MPI_Status recv_status,*send_status; 17066543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17076543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 17086543fbbaSBarry Smith #endif 17090ac07820SSatish Balay 1710d64ed03dSBarry Smith PetscFunctionBegin; 17110ac07820SSatish Balay /* first count number of contributors to each processor */ 1712b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1713b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1714b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 17156543fbbaSBarry Smith j = 0; 17160ac07820SSatish Balay for (i=0; i<N; i++) { 17176543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 17186543fbbaSBarry Smith lastidx = idx; 17196543fbbaSBarry Smith for (; j<size; j++) { 1720357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 17216543fbbaSBarry Smith nprocs[2*j]++; 17226543fbbaSBarry Smith nprocs[2*j+1] = 1; 17236543fbbaSBarry Smith owner[i] = j; 17246543fbbaSBarry Smith #if defined(PETSC_DEBUG) 17256543fbbaSBarry Smith found = PETSC_TRUE; 17266543fbbaSBarry Smith #endif 17276543fbbaSBarry Smith break; 17280ac07820SSatish Balay } 17290ac07820SSatish Balay } 17306543fbbaSBarry Smith #if defined(PETSC_DEBUG) 173129bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 17326543fbbaSBarry Smith found = PETSC_FALSE; 17336543fbbaSBarry Smith #endif 17340ac07820SSatish Balay } 1735c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 17360ac07820SSatish Balay 17370ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1738c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 17390ac07820SSatish Balay 17400ac07820SSatish Balay /* post receives: */ 1741b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1742b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 17430ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1744b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 17450ac07820SSatish Balay } 17460ac07820SSatish Balay 17470ac07820SSatish Balay /* do sends: 17480ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 17490ac07820SSatish Balay the ith processor 17500ac07820SSatish Balay */ 1751b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1752b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1753b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 17540ac07820SSatish Balay starts[0] = 0; 1755c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17560ac07820SSatish Balay for (i=0; i<N; i++) { 17570ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 17580ac07820SSatish Balay } 17590ac07820SSatish Balay 17600ac07820SSatish Balay starts[0] = 0; 1761c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 17620ac07820SSatish Balay count = 0; 17630ac07820SSatish Balay for (i=0; i<size; i++) { 1764c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1765b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 17660ac07820SSatish Balay } 17670ac07820SSatish Balay } 1768606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 17690ac07820SSatish Balay 1770357c27ecSBarry Smith base = owners[rank]; 17710ac07820SSatish Balay 17720ac07820SSatish Balay /* wait on receives */ 1773b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 17740ac07820SSatish Balay source = lens + nrecvs; 17750ac07820SSatish Balay count = nrecvs; slen = 0; 17760ac07820SSatish Balay while (count) { 1777ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 17780ac07820SSatish Balay /* unpack receives into our local space */ 1779b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 17800ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 17810ac07820SSatish Balay lens[imdex] = n; 17820ac07820SSatish Balay slen += n; 17830ac07820SSatish Balay count--; 17840ac07820SSatish Balay } 1785606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 17860ac07820SSatish Balay 17870ac07820SSatish Balay /* move the data into the send scatter */ 1788b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 17890ac07820SSatish Balay count = 0; 17900ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 17910ac07820SSatish Balay values = rvalues + i*nmax; 17920ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 17930ac07820SSatish Balay lrows[count++] = values[j] - base; 17940ac07820SSatish Balay } 17950ac07820SSatish Balay } 1796606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1797606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1798606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1799606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 18000ac07820SSatish Balay 18010ac07820SSatish Balay /* actually zap the local rows */ 180272dacd9aSBarry Smith /* 180372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1804a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 180572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 180672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 180772dacd9aSBarry Smith 1808f4df32b1SMatthew Knepley Contributed by: Matthew Knepley 180972dacd9aSBarry Smith */ 18109c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1811f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1812899cda47SBarry Smith if ((diag != 0.0) && (l->A->rmap.N == l->A->cmap.N)) { 1813f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1814f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1815f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1816fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 181729bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1818fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 18196525c446SSatish Balay } 1820a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1821a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1822f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1823a07cd24cSSatish Balay } 1824a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1825a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18269c957beeSSatish Balay } else { 1827f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1828a07cd24cSSatish Balay } 18299c957beeSSatish Balay 1830606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1831a07cd24cSSatish Balay 18320ac07820SSatish Balay /* wait on sends */ 18330ac07820SSatish Balay if (nsends) { 183482502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1835ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1836606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 18370ac07820SSatish Balay } 1838606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1839606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 18400ac07820SSatish Balay 18413a40ed3dSBarry Smith PetscFunctionReturn(0); 18420ac07820SSatish Balay } 184372dacd9aSBarry Smith 18444a2ae208SSatish Balay #undef __FUNCT__ 18454a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1846dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1847bb5a7306SBarry Smith { 1848bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1849dfbe8321SBarry Smith PetscErrorCode ierr; 1850d64ed03dSBarry Smith 1851d64ed03dSBarry Smith PetscFunctionBegin; 1852bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 18533a40ed3dSBarry Smith PetscFunctionReturn(0); 1854bb5a7306SBarry Smith } 1855bb5a7306SBarry Smith 18566849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 18570ac07820SSatish Balay 18584a2ae208SSatish Balay #undef __FUNCT__ 18594a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1860dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 18617fc3c18eSBarry Smith { 18627fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 18637fc3c18eSBarry Smith Mat a,b,c,d; 18647fc3c18eSBarry Smith PetscTruth flg; 1865dfbe8321SBarry Smith PetscErrorCode ierr; 18667fc3c18eSBarry Smith 18677fc3c18eSBarry Smith PetscFunctionBegin; 18687fc3c18eSBarry Smith a = matA->A; b = matA->B; 18697fc3c18eSBarry Smith c = matB->A; d = matB->B; 18707fc3c18eSBarry Smith 18717fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1872abc0a331SBarry Smith if (flg) { 18737fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 18747fc3c18eSBarry Smith } 18757fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,A->comm);CHKERRQ(ierr); 18767fc3c18eSBarry Smith PetscFunctionReturn(0); 18777fc3c18eSBarry Smith } 18787fc3c18eSBarry Smith 18793c896bc6SHong Zhang #undef __FUNCT__ 18803c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 18813c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 18823c896bc6SHong Zhang { 18833c896bc6SHong Zhang PetscErrorCode ierr; 18843c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 18853c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 18863c896bc6SHong Zhang 18873c896bc6SHong Zhang PetscFunctionBegin; 18883c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 18893c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 18903c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 18913c896bc6SHong Zhang } else { 18923c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 18933c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 18943c896bc6SHong Zhang } 18953c896bc6SHong Zhang PetscFunctionReturn(0); 18963c896bc6SHong Zhang } 1897273d9f13SBarry Smith 18984a2ae208SSatish Balay #undef __FUNCT__ 18994a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1900dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1901273d9f13SBarry Smith { 1902dfbe8321SBarry Smith PetscErrorCode ierr; 1903273d9f13SBarry Smith 1904273d9f13SBarry Smith PetscFunctionBegin; 19057edd0491SSatish Balay ierr = MatMPIBAIJSetPreallocation(A,PetscMax(A->rmap.bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1906273d9f13SBarry Smith PetscFunctionReturn(0); 1907273d9f13SBarry Smith } 1908273d9f13SBarry Smith 19094fe895cdSHong Zhang #include "petscblaslapack.h" 19104fe895cdSHong Zhang #undef __FUNCT__ 19114fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 19124fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 19134fe895cdSHong Zhang { 19144fe895cdSHong Zhang PetscErrorCode ierr; 19154fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 19164fe895cdSHong Zhang PetscBLASInt bnz,one=1; 19174fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 19184fe895cdSHong Zhang 19194fe895cdSHong Zhang PetscFunctionBegin; 19204fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 19214fe895cdSHong Zhang PetscScalar alpha = a; 19224fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 19234fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 19244fe895cdSHong Zhang bnz = (PetscBLASInt)x->nz; 19254fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19264fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 19274fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 19284fe895cdSHong Zhang bnz = (PetscBLASInt)x->nz; 19294fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 19304fe895cdSHong Zhang } else { 19314fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 19324fe895cdSHong Zhang } 19334fe895cdSHong Zhang PetscFunctionReturn(0); 19344fe895cdSHong Zhang } 19354fe895cdSHong Zhang 193699cafbc1SBarry Smith #undef __FUNCT__ 193799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 193899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 193999cafbc1SBarry Smith { 194099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 194199cafbc1SBarry Smith PetscErrorCode ierr; 194299cafbc1SBarry Smith 194399cafbc1SBarry Smith PetscFunctionBegin; 194499cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 194599cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 194699cafbc1SBarry Smith PetscFunctionReturn(0); 194799cafbc1SBarry Smith } 194899cafbc1SBarry Smith 194999cafbc1SBarry Smith #undef __FUNCT__ 195099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 195199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 195299cafbc1SBarry Smith { 195399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 195499cafbc1SBarry Smith PetscErrorCode ierr; 195599cafbc1SBarry Smith 195699cafbc1SBarry Smith PetscFunctionBegin; 195799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 195899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 195999cafbc1SBarry Smith PetscFunctionReturn(0); 196099cafbc1SBarry Smith } 196199cafbc1SBarry Smith 196279bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1963cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1964cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1965cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1966cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1967cc2dc46cSBarry Smith MatMult_MPIBAIJ, 196897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 19697c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 19707c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 1971cc2dc46cSBarry Smith 0, 1972cc2dc46cSBarry Smith 0, 1973cc2dc46cSBarry Smith 0, 197497304618SKris Buschelman /*10*/ 0, 1975cc2dc46cSBarry Smith 0, 1976cc2dc46cSBarry Smith 0, 1977cc2dc46cSBarry Smith 0, 1978cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 197997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 19807fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1981cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1982cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1983cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 198497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 1985cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1986cc2dc46cSBarry Smith 0, 1987cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1988cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 198997304618SKris Buschelman /*25*/ MatZeroRows_MPIBAIJ, 1990cc2dc46cSBarry Smith 0, 1991cc2dc46cSBarry Smith 0, 1992cc2dc46cSBarry Smith 0, 1993cc2dc46cSBarry Smith 0, 199497304618SKris Buschelman /*30*/ MatSetUpPreallocation_MPIBAIJ, 1995273d9f13SBarry Smith 0, 1996cc2dc46cSBarry Smith 0, 1997cc2dc46cSBarry Smith 0, 1998cc2dc46cSBarry Smith 0, 199997304618SKris Buschelman /*35*/ MatDuplicate_MPIBAIJ, 2000cc2dc46cSBarry Smith 0, 2001cc2dc46cSBarry Smith 0, 2002cc2dc46cSBarry Smith 0, 2003cc2dc46cSBarry Smith 0, 20044fe895cdSHong Zhang /*40*/ MatAXPY_MPIBAIJ, 2005cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2006cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2007cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 20083c896bc6SHong Zhang MatCopy_MPIBAIJ, 20098c07d4e3SBarry Smith /*45*/ 0, 2010cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2011cc2dc46cSBarry Smith 0, 2012cc2dc46cSBarry Smith 0, 2013cc2dc46cSBarry Smith 0, 2014521d7252SBarry Smith /*50*/ 0, 2015cc2dc46cSBarry Smith 0, 2016cc2dc46cSBarry Smith 0, 2017cc2dc46cSBarry Smith 0, 2018cc2dc46cSBarry Smith 0, 201997304618SKris Buschelman /*55*/ 0, 2020cc2dc46cSBarry Smith 0, 2021cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 2022cc2dc46cSBarry Smith 0, 2023cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 202497304618SKris Buschelman /*60*/ 0, 2025f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2026f14a1c24SBarry Smith MatView_MPIBAIJ, 2027357abbc8SBarry Smith 0, 20287843d17aSBarry Smith 0, 202997304618SKris Buschelman /*65*/ 0, 20307843d17aSBarry Smith 0, 20317843d17aSBarry Smith 0, 20327843d17aSBarry Smith 0, 20337843d17aSBarry Smith 0, 2034985db425SBarry Smith /*70*/ MatGetRowMaxAbs_MPIBAIJ, 20357843d17aSBarry Smith 0, 203697304618SKris Buschelman 0, 203797304618SKris Buschelman 0, 203897304618SKris Buschelman 0, 203997304618SKris Buschelman /*75*/ 0, 204097304618SKris Buschelman 0, 204197304618SKris Buschelman 0, 204297304618SKris Buschelman 0, 204397304618SKris Buschelman 0, 204497304618SKris Buschelman /*80*/ 0, 204597304618SKris Buschelman 0, 204697304618SKris Buschelman 0, 204797304618SKris Buschelman 0, 2048865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2049865e5f61SKris Buschelman /*85*/ 0, 2050865e5f61SKris Buschelman 0, 2051865e5f61SKris Buschelman 0, 2052865e5f61SKris Buschelman 0, 2053865e5f61SKris Buschelman 0, 2054865e5f61SKris Buschelman /*90*/ 0, 2055865e5f61SKris Buschelman 0, 2056865e5f61SKris Buschelman 0, 2057865e5f61SKris Buschelman 0, 2058865e5f61SKris Buschelman 0, 2059865e5f61SKris Buschelman /*95*/ 0, 2060865e5f61SKris Buschelman 0, 2061865e5f61SKris Buschelman 0, 206299cafbc1SBarry Smith 0, 206399cafbc1SBarry Smith 0, 206499cafbc1SBarry Smith /*100*/0, 206599cafbc1SBarry Smith 0, 206699cafbc1SBarry Smith 0, 206799cafbc1SBarry Smith 0, 206899cafbc1SBarry Smith 0, 206999cafbc1SBarry Smith /*105*/0, 207099cafbc1SBarry Smith MatRealPart_MPIBAIJ, 207199cafbc1SBarry Smith MatImaginaryPart_MPIBAIJ}; 207279bdfe76SSatish Balay 20735ef9f2a5SBarry Smith 2074e18c124aSSatish Balay EXTERN_C_BEGIN 20754a2ae208SSatish Balay #undef __FUNCT__ 20764a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2077be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 20785ef9f2a5SBarry Smith { 20795ef9f2a5SBarry Smith PetscFunctionBegin; 20805ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 20815ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 20825ef9f2a5SBarry Smith PetscFunctionReturn(0); 20835ef9f2a5SBarry Smith } 2084e18c124aSSatish Balay EXTERN_C_END 208579bdfe76SSatish Balay 2086273d9f13SBarry Smith EXTERN_C_BEGIN 2087f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2088d94109b8SHong Zhang EXTERN_C_END 2089d94109b8SHong Zhang 2090aac34f13SBarry Smith #undef __FUNCT__ 2091aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2092b7940d39SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt Ii[],const PetscInt J[],const PetscScalar v[]) 2093aac34f13SBarry Smith { 2094899cda47SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)B->data; 2095899cda47SBarry Smith PetscInt m = B->rmap.n/bs,cstart = baij->cstartbs, cend = baij->cendbs,j,nnz,i,d; 2096899cda47SBarry Smith PetscInt *d_nnz,*o_nnz,nnz_max = 0,rstart = baij->rstartbs,ii; 2097aac34f13SBarry Smith const PetscInt *JJ; 2098aac34f13SBarry Smith PetscScalar *values; 2099aac34f13SBarry Smith PetscErrorCode ierr; 2100aac34f13SBarry Smith 2101aac34f13SBarry Smith PetscFunctionBegin; 2102aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2103b7940d39SSatish Balay if (Ii[0]) SETERRQ1(PETSC_ERR_ARG_RANGE,"Ii[0] must be 0 it is %D",Ii[0]); 2104aac34f13SBarry Smith #endif 2105aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2106aac34f13SBarry Smith o_nnz = d_nnz + m; 2107aac34f13SBarry Smith 2108aac34f13SBarry Smith for (i=0; i<m; i++) { 2109b7940d39SSatish Balay nnz = Ii[i+1]- Ii[i]; 2110b7940d39SSatish Balay JJ = J + Ii[i]; 2111aac34f13SBarry Smith nnz_max = PetscMax(nnz_max,nnz); 2112aac34f13SBarry Smith #if defined(PETSC_OPT_g) 2113aac34f13SBarry Smith if (nnz < 0) SETERRQ1(PETSC_ERR_ARG_RANGE,"Local row %D has a negative %D number of columns",i,nnz); 2114aac34f13SBarry Smith #endif 2115aac34f13SBarry Smith for (j=0; j<nnz; j++) { 2116aac34f13SBarry Smith if (*JJ >= cstart) break; 2117aac34f13SBarry Smith JJ++; 2118aac34f13SBarry Smith } 2119aac34f13SBarry Smith d = 0; 2120aac34f13SBarry Smith for (; j<nnz; j++) { 2121aac34f13SBarry Smith if (*JJ++ >= cend) break; 2122aac34f13SBarry Smith d++; 2123aac34f13SBarry Smith } 2124aac34f13SBarry Smith d_nnz[i] = d; 2125aac34f13SBarry Smith o_nnz[i] = nnz - d; 2126aac34f13SBarry Smith } 2127aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2128aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2129aac34f13SBarry Smith 2130aac34f13SBarry Smith if (v) values = (PetscScalar*)v; 2131aac34f13SBarry Smith else { 2132aac34f13SBarry Smith ierr = PetscMalloc(bs*bs*(nnz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2133aac34f13SBarry Smith ierr = PetscMemzero(values,bs*bs*nnz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2134aac34f13SBarry Smith } 2135aac34f13SBarry Smith 2136aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 2137aac34f13SBarry Smith for (i=0; i<m; i++) { 2138aac34f13SBarry Smith ii = i + rstart; 2139b7940d39SSatish Balay nnz = Ii[i+1]- Ii[i]; 2140b7940d39SSatish Balay ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&ii,nnz,J+Ii[i],values+(v ? Ii[i] : 0),INSERT_VALUES);CHKERRQ(ierr); 2141aac34f13SBarry Smith } 2142aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2143aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2144aac34f13SBarry Smith ierr = MatSetOption(B,MAT_COLUMNS_UNSORTED);CHKERRQ(ierr); 2145aac34f13SBarry Smith 2146aac34f13SBarry Smith if (!v) { 2147aac34f13SBarry Smith ierr = PetscFree(values);CHKERRQ(ierr); 2148aac34f13SBarry Smith } 2149aac34f13SBarry Smith PetscFunctionReturn(0); 2150aac34f13SBarry Smith } 2151aac34f13SBarry Smith 2152aac34f13SBarry Smith #undef __FUNCT__ 2153aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2154aac34f13SBarry Smith /*@C 2155aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2156aac34f13SBarry Smith (the default parallel PETSc format). 2157aac34f13SBarry Smith 2158aac34f13SBarry Smith Collective on MPI_Comm 2159aac34f13SBarry Smith 2160aac34f13SBarry Smith Input Parameters: 2161aac34f13SBarry Smith + A - the matrix 2162aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2163aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2164aac34f13SBarry Smith - v - optional values in the matrix 2165aac34f13SBarry Smith 2166aac34f13SBarry Smith Level: developer 2167aac34f13SBarry Smith 2168aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2169aac34f13SBarry Smith 2170aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2171aac34f13SBarry Smith @*/ 2172be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2173aac34f13SBarry Smith { 2174aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2175aac34f13SBarry Smith 2176aac34f13SBarry Smith PetscFunctionBegin; 2177aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2178aac34f13SBarry Smith if (f) { 2179aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2180aac34f13SBarry Smith } 2181aac34f13SBarry Smith PetscFunctionReturn(0); 2182aac34f13SBarry Smith } 2183aac34f13SBarry Smith 2184d94109b8SHong Zhang EXTERN_C_BEGIN 21854a2ae208SSatish Balay #undef __FUNCT__ 2186a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2187be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2188a23d5eceSKris Buschelman { 2189a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2190dfbe8321SBarry Smith PetscErrorCode ierr; 2191b24ad042SBarry Smith PetscInt i; 2192a23d5eceSKris Buschelman 2193a23d5eceSKris Buschelman PetscFunctionBegin; 2194a23d5eceSKris Buschelman B->preallocated = PETSC_TRUE; 21958c07d4e3SBarry Smith ierr = PetscOptionsBegin(B->comm,B->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 21968c07d4e3SBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 21978c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2198a23d5eceSKris Buschelman 2199a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2200a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2201a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 220277431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 220377431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2204899cda47SBarry Smith 2205899cda47SBarry Smith B->rmap.bs = bs; 2206899cda47SBarry Smith B->cmap.bs = bs; 22076148ca0dSBarry Smith ierr = PetscMapSetUp(&B->rmap);CHKERRQ(ierr); 22086148ca0dSBarry Smith ierr = PetscMapSetUp(&B->cmap);CHKERRQ(ierr); 2209899cda47SBarry Smith 2210a23d5eceSKris Buschelman if (d_nnz) { 2211899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 221277431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2213a23d5eceSKris Buschelman } 2214a23d5eceSKris Buschelman } 2215a23d5eceSKris Buschelman if (o_nnz) { 2216899cda47SBarry Smith for (i=0; i<B->rmap.n/bs; i++) { 221777431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2218a23d5eceSKris Buschelman } 2219a23d5eceSKris Buschelman } 2220a23d5eceSKris Buschelman 2221a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2222a23d5eceSKris Buschelman b->bs2 = bs*bs; 2223899cda47SBarry Smith b->mbs = B->rmap.n/bs; 2224899cda47SBarry Smith b->nbs = B->cmap.n/bs; 2225899cda47SBarry Smith b->Mbs = B->rmap.N/bs; 2226899cda47SBarry Smith b->Nbs = B->cmap.N/bs; 2227a23d5eceSKris Buschelman 2228a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2229899cda47SBarry Smith b->rangebs[i] = B->rmap.range[i]/bs; 2230a23d5eceSKris Buschelman } 2231899cda47SBarry Smith b->rstartbs = B->rmap.rstart/bs; 2232899cda47SBarry Smith b->rendbs = B->rmap.rend/bs; 2233899cda47SBarry Smith b->cstartbs = B->cmap.rstart/bs; 2234899cda47SBarry Smith b->cendbs = B->cmap.rend/bs; 2235a23d5eceSKris Buschelman 2236f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2237899cda47SBarry Smith ierr = MatSetSizes(b->A,B->rmap.n,B->cmap.n,B->rmap.n,B->cmap.n);CHKERRQ(ierr); 22389c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 2239c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 224052e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2241f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2242899cda47SBarry Smith ierr = MatSetSizes(b->B,B->rmap.n,B->cmap.N,B->rmap.n,B->cmap.N);CHKERRQ(ierr); 22439c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 2244c60e587dSKris Buschelman ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 224552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 2246c60e587dSKris Buschelman 2247a23d5eceSKris Buschelman ierr = MatStashCreate_Private(B->comm,bs,&B->bstash);CHKERRQ(ierr); 2248a23d5eceSKris Buschelman 2249a23d5eceSKris Buschelman PetscFunctionReturn(0); 2250a23d5eceSKris Buschelman } 2251a23d5eceSKris Buschelman EXTERN_C_END 2252a23d5eceSKris Buschelman 2253a23d5eceSKris Buschelman EXTERN_C_BEGIN 2254be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2255be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 225692b32695SKris Buschelman EXTERN_C_END 22575bf65638SKris Buschelman 22580bad9183SKris Buschelman /*MC 2259fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 22600bad9183SKris Buschelman 22610bad9183SKris Buschelman Options Database Keys: 22628c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 22638c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 22648c07d4e3SBarry Smith - -mat_use_hash_table <fact> 22650bad9183SKris Buschelman 22660bad9183SKris Buschelman Level: beginner 22670bad9183SKris Buschelman 22680bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 22690bad9183SKris Buschelman M*/ 22700bad9183SKris Buschelman 227192b32695SKris Buschelman EXTERN_C_BEGIN 2272a23d5eceSKris Buschelman #undef __FUNCT__ 22734a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2274be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2275273d9f13SBarry Smith { 2276273d9f13SBarry Smith Mat_MPIBAIJ *b; 2277dfbe8321SBarry Smith PetscErrorCode ierr; 2278273d9f13SBarry Smith PetscTruth flg; 2279273d9f13SBarry Smith 2280273d9f13SBarry Smith PetscFunctionBegin; 2281*38f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 228282502324SSatish Balay B->data = (void*)b; 228382502324SSatish Balay 2284085a36d4SBarry Smith 2285273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2286273d9f13SBarry Smith B->mapping = 0; 2287273d9f13SBarry Smith B->factor = 0; 2288273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2289273d9f13SBarry Smith 2290273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 2291273d9f13SBarry Smith ierr = MPI_Comm_rank(B->comm,&b->rank);CHKERRQ(ierr); 2292273d9f13SBarry Smith ierr = MPI_Comm_size(B->comm,&b->size);CHKERRQ(ierr); 2293273d9f13SBarry Smith 2294273d9f13SBarry Smith /* build local table of row and column ownerships */ 2295899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2296273d9f13SBarry Smith 2297273d9f13SBarry Smith /* build cache for off array entries formed */ 2298273d9f13SBarry Smith ierr = MatStashCreate_Private(B->comm,1,&B->stash);CHKERRQ(ierr); 2299273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2300273d9f13SBarry Smith b->colmap = PETSC_NULL; 2301273d9f13SBarry Smith b->garray = PETSC_NULL; 2302273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2303273d9f13SBarry Smith 2304cfce73b9SSatish Balay #if defined(PETSC_USE_MAT_SINGLE) 2305273d9f13SBarry Smith /* stuff for MatSetValues_XXX in single precision */ 230664a35ccbSBarry Smith b->setvalueslen = 0; 2307273d9f13SBarry Smith b->setvaluescopy = PETSC_NULL; 2308273d9f13SBarry Smith #endif 2309273d9f13SBarry Smith 2310273d9f13SBarry Smith /* stuff used in block assembly */ 2311273d9f13SBarry Smith b->barray = 0; 2312273d9f13SBarry Smith 2313273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2314273d9f13SBarry Smith b->lvec = 0; 2315273d9f13SBarry Smith b->Mvctx = 0; 2316273d9f13SBarry Smith 2317273d9f13SBarry Smith /* stuff for MatGetRow() */ 2318273d9f13SBarry Smith b->rowindices = 0; 2319273d9f13SBarry Smith b->rowvalues = 0; 2320273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2321273d9f13SBarry Smith 2322273d9f13SBarry Smith /* hash table stuff */ 2323273d9f13SBarry Smith b->ht = 0; 2324273d9f13SBarry Smith b->hd = 0; 2325273d9f13SBarry Smith b->ht_size = 0; 2326273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2327273d9f13SBarry Smith b->ht_fact = 0; 2328273d9f13SBarry Smith b->ht_total_ct = 0; 2329273d9f13SBarry Smith b->ht_insert_ct = 0; 2330273d9f13SBarry Smith 233177925062SSatish Balay ierr = PetscOptionsBegin(B->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 23328c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2333273d9f13SBarry Smith if (flg) { 2334f6275e2eSBarry Smith PetscReal fact = 1.39; 2335273d9f13SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 23368c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 2337273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 2338273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2339ae15b995SBarry Smith ierr = PetscInfo1(0,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 2340273d9f13SBarry Smith } 23418c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 23428c07d4e3SBarry Smith 2343273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 2344273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 2345273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 2346273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 2347273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 2348273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 2349273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 2350273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 2351273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 2352a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 2353a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 2354a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 2355aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 235644ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 2357aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 235892b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 235992b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 236092b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 23615bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 23625bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 23635bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 236417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 2365273d9f13SBarry Smith PetscFunctionReturn(0); 2366273d9f13SBarry Smith } 2367273d9f13SBarry Smith EXTERN_C_END 2368273d9f13SBarry Smith 2369209238afSKris Buschelman /*MC 2370002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2371209238afSKris Buschelman 2372209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2373209238afSKris Buschelman and MATMPIBAIJ otherwise. 2374209238afSKris Buschelman 2375209238afSKris Buschelman Options Database Keys: 2376209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2377209238afSKris Buschelman 2378209238afSKris Buschelman Level: beginner 2379209238afSKris Buschelman 2380aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 2381209238afSKris Buschelman M*/ 2382209238afSKris Buschelman 2383209238afSKris Buschelman EXTERN_C_BEGIN 2384209238afSKris Buschelman #undef __FUNCT__ 2385209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 2386be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 2387dfbe8321SBarry Smith { 23886849ba73SBarry Smith PetscErrorCode ierr; 2389b24ad042SBarry Smith PetscMPIInt size; 2390209238afSKris Buschelman 2391209238afSKris Buschelman PetscFunctionBegin; 2392209238afSKris Buschelman ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); 2393209238afSKris Buschelman if (size == 1) { 2394209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 2395209238afSKris Buschelman } else { 2396209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 2397209238afSKris Buschelman } 2398209238afSKris Buschelman PetscFunctionReturn(0); 2399209238afSKris Buschelman } 2400209238afSKris Buschelman EXTERN_C_END 2401209238afSKris Buschelman 24024a2ae208SSatish Balay #undef __FUNCT__ 24034a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 2404273d9f13SBarry Smith /*@C 2405aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2406273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2407273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2408273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2409273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2410273d9f13SBarry Smith 2411273d9f13SBarry Smith Collective on Mat 2412273d9f13SBarry Smith 2413273d9f13SBarry Smith Input Parameters: 2414273d9f13SBarry Smith + A - the matrix 2415273d9f13SBarry Smith . bs - size of blockk 2416273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2417273d9f13SBarry Smith submatrix (same for all local rows) 2418273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2419273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 2420273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 2421273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2422273d9f13SBarry Smith submatrix (same for all local rows). 2423273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2424273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 2425273d9f13SBarry Smith each block row) or PETSC_NULL. 2426273d9f13SBarry Smith 242749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2428273d9f13SBarry Smith 2429273d9f13SBarry Smith Options Database Keys: 24308c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 24318c07d4e3SBarry Smith - -mat_use_hash_table <fact> 2432273d9f13SBarry Smith 2433273d9f13SBarry Smith Notes: 2434273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2435273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2436273d9f13SBarry Smith 2437273d9f13SBarry Smith Storage Information: 2438273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2439273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2440273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2441273d9f13SBarry Smith local matrix (a rectangular submatrix). 2442273d9f13SBarry Smith 2443273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2444273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 2445273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 2446273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2447273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2448273d9f13SBarry Smith 2449273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2450273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2451273d9f13SBarry Smith 2452273d9f13SBarry Smith .vb 2453273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2454273d9f13SBarry Smith ------------------- 2455273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 2456273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 2457273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 2458273d9f13SBarry Smith ------------------- 2459273d9f13SBarry Smith .ve 2460273d9f13SBarry Smith 2461273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2462273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2463273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2464273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2465273d9f13SBarry Smith 2466273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2467273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2468273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2469273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2470273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2471273d9f13SBarry Smith matrices. 2472273d9f13SBarry Smith 2473273d9f13SBarry Smith Level: intermediate 2474273d9f13SBarry Smith 2475273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 2476273d9f13SBarry Smith 2477aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 2478273d9f13SBarry Smith @*/ 2479be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 2480273d9f13SBarry Smith { 2481b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 2482273d9f13SBarry Smith 2483273d9f13SBarry Smith PetscFunctionBegin; 2484a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 2485a23d5eceSKris Buschelman if (f) { 2486a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2487273d9f13SBarry Smith } 2488273d9f13SBarry Smith PetscFunctionReturn(0); 2489273d9f13SBarry Smith } 2490273d9f13SBarry Smith 24914a2ae208SSatish Balay #undef __FUNCT__ 24924a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 249379bdfe76SSatish Balay /*@C 249479bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 249579bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 249679bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 249779bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 249879bdfe76SSatish Balay performance can be increased by more than a factor of 50. 249979bdfe76SSatish Balay 2500db81eaa0SLois Curfman McInnes Collective on MPI_Comm 2501db81eaa0SLois Curfman McInnes 250279bdfe76SSatish Balay Input Parameters: 2503db81eaa0SLois Curfman McInnes + comm - MPI communicator 250479bdfe76SSatish Balay . bs - size of blockk 250579bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 250692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 250792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 250892e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 250992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 251092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 2511be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 2512be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 251347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 251479bdfe76SSatish Balay submatrix (same for all local rows) 251547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 251692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 2517db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 251847a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 251979bdfe76SSatish Balay submatrix (same for all local rows). 252047a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 252192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 252292e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 252379bdfe76SSatish Balay 252479bdfe76SSatish Balay Output Parameter: 252579bdfe76SSatish Balay . A - the matrix 252679bdfe76SSatish Balay 2527db81eaa0SLois Curfman McInnes Options Database Keys: 25288c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 25298c07d4e3SBarry Smith - -mat_use_hash_table <fact> 25303ffaccefSLois Curfman McInnes 2531b259b22eSLois Curfman McInnes Notes: 253249a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 253349a6f317SBarry Smith 253447a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 253547a75d0bSBarry Smith 253679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 253779bdfe76SSatish Balay (possibly both). 253879bdfe76SSatish Balay 2539be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2540be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 2541be79a94dSBarry Smith 254279bdfe76SSatish Balay Storage Information: 254379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 254479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 254579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 254679bdfe76SSatish Balay local matrix (a rectangular submatrix). 254779bdfe76SSatish Balay 254879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 254979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 255079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 255179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 255279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 255379bdfe76SSatish Balay 255479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 255579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 255679bdfe76SSatish Balay 2557db81eaa0SLois Curfman McInnes .vb 2558db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 2559db81eaa0SLois Curfman McInnes ------------------- 2560db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 2561db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 2562db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 2563db81eaa0SLois Curfman McInnes ------------------- 2564db81eaa0SLois Curfman McInnes .ve 256579bdfe76SSatish Balay 256679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 256779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 256879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 256957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 257079bdfe76SSatish Balay 2571d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2572d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 257379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 257492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 257592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 25766da5968aSLois Curfman McInnes matrices. 257779bdfe76SSatish Balay 2578027ccd11SLois Curfman McInnes Level: intermediate 2579027ccd11SLois Curfman McInnes 258092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 258179bdfe76SSatish Balay 2582aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 258379bdfe76SSatish Balay @*/ 2584be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 258579bdfe76SSatish Balay { 25866849ba73SBarry Smith PetscErrorCode ierr; 2587b24ad042SBarry Smith PetscMPIInt size; 258879bdfe76SSatish Balay 2589d64ed03dSBarry Smith PetscFunctionBegin; 2590f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 2591f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 2592d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2593273d9f13SBarry Smith if (size > 1) { 2594273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 2595273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 2596273d9f13SBarry Smith } else { 2597273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 2598273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 25993914022bSBarry Smith } 26003a40ed3dSBarry Smith PetscFunctionReturn(0); 260179bdfe76SSatish Balay } 2602026e39d0SSatish Balay 26034a2ae208SSatish Balay #undef __FUNCT__ 26044a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 26056849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 26060ac07820SSatish Balay { 26070ac07820SSatish Balay Mat mat; 26080ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 2609dfbe8321SBarry Smith PetscErrorCode ierr; 2610b24ad042SBarry Smith PetscInt len=0; 26110ac07820SSatish Balay 2612d64ed03dSBarry Smith PetscFunctionBegin; 26130ac07820SSatish Balay *newmat = 0; 2614f69a0ea3SMatthew Knepley ierr = MatCreate(matin->comm,&mat);CHKERRQ(ierr); 2615899cda47SBarry Smith ierr = MatSetSizes(mat,matin->rmap.n,matin->cmap.n,matin->rmap.N,matin->cmap.N);CHKERRQ(ierr); 2616be5d1d56SKris Buschelman ierr = MatSetType(mat,matin->type_name);CHKERRQ(ierr); 26171d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 26187fff6886SHong Zhang 26194beb1cfeSHong Zhang mat->factor = matin->factor; 2620273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 26210ac07820SSatish Balay mat->assembled = PETSC_TRUE; 26227fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 26237fff6886SHong Zhang 2624273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 2625899cda47SBarry Smith mat->rmap.bs = matin->rmap.bs; 26260ac07820SSatish Balay a->bs2 = oldmat->bs2; 26270ac07820SSatish Balay a->mbs = oldmat->mbs; 26280ac07820SSatish Balay a->nbs = oldmat->nbs; 26290ac07820SSatish Balay a->Mbs = oldmat->Mbs; 26300ac07820SSatish Balay a->Nbs = oldmat->Nbs; 26310ac07820SSatish Balay 2632899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->rmap,&mat->rmap);CHKERRQ(ierr); 2633899cda47SBarry Smith ierr = PetscMapCopy(matin->comm,&matin->cmap,&mat->cmap);CHKERRQ(ierr); 2634899cda47SBarry Smith 26350ac07820SSatish Balay a->size = oldmat->size; 26360ac07820SSatish Balay a->rank = oldmat->rank; 2637aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2638aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2639aef5e8e0SSatish Balay a->rowindices = 0; 26400ac07820SSatish Balay a->rowvalues = 0; 26410ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 264230793edcSSatish Balay a->barray = 0; 2643899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 2644899cda47SBarry Smith a->rendbs = oldmat->rendbs; 2645899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 2646899cda47SBarry Smith a->cendbs = oldmat->cendbs; 26470ac07820SSatish Balay 2648133cdb44SSatish Balay /* hash table stuff */ 2649133cdb44SSatish Balay a->ht = 0; 2650133cdb44SSatish Balay a->hd = 0; 2651133cdb44SSatish Balay a->ht_size = 0; 2652133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 265325fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2654133cdb44SSatish Balay a->ht_total_ct = 0; 2655133cdb44SSatish Balay a->ht_insert_ct = 0; 2656133cdb44SSatish Balay 2657899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 26588798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 2659899cda47SBarry Smith ierr = MatStashCreate_Private(matin->comm,matin->rmap.bs,&mat->bstash);CHKERRQ(ierr); 26600ac07820SSatish Balay if (oldmat->colmap) { 2661aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 26620f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 266348e59246SSatish Balay #else 2664b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 266552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 2666b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 266748e59246SSatish Balay #endif 26680ac07820SSatish Balay } else a->colmap = 0; 26694beb1cfeSHong Zhang 26700ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 2671b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 267252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 2673b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 26740ac07820SSatish Balay } else a->garray = 0; 26750ac07820SSatish Balay 26760ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 267752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 26780ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 267952e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 26807fff6886SHong Zhang 26812e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 268252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 26832e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 268452e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 2685b0a32e0cSBarry Smith ierr = PetscFListDuplicate(matin->qlist,&mat->qlist);CHKERRQ(ierr); 26860ac07820SSatish Balay *newmat = mat; 26874beb1cfeSHong Zhang 26883a40ed3dSBarry Smith PetscFunctionReturn(0); 26890ac07820SSatish Balay } 269057b952d6SSatish Balay 2691e090d566SSatish Balay #include "petscsys.h" 269257b952d6SSatish Balay 26934a2ae208SSatish Balay #undef __FUNCT__ 26944a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 2695f69a0ea3SMatthew Knepley PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, MatType type,Mat *newmat) 269657b952d6SSatish Balay { 269757b952d6SSatish Balay Mat A; 26986849ba73SBarry Smith PetscErrorCode ierr; 2699b24ad042SBarry Smith int fd; 2700b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 270187828ca2SBarry Smith PetscScalar *vals,*buf; 270257b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 270357b952d6SSatish Balay MPI_Status status; 2704b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 2705b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 2706910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 2707167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 2708dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 2709910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 2710dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 271157b952d6SSatish Balay 2712d64ed03dSBarry Smith PetscFunctionBegin; 271377925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 27148c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 27158c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 271657b952d6SSatish Balay 2717d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2718d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 271957b952d6SSatish Balay if (!rank) { 2720b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2721e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2722552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 27236c5fab8fSBarry Smith } 2724d64ed03dSBarry Smith 2725b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 272657b952d6SSatish Balay M = header[1]; N = header[2]; 272757b952d6SSatish Balay 272829bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 272957b952d6SSatish Balay 273057b952d6SSatish Balay /* 273157b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 273257b952d6SSatish Balay divisible by the blocksize 273357b952d6SSatish Balay */ 273457b952d6SSatish Balay Mbs = M/bs; 2735dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 273657b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 273757b952d6SSatish Balay else Mbs++; 273857b952d6SSatish Balay if (extra_rows && !rank) { 2739ae15b995SBarry Smith ierr = PetscInfo(0,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 274057b952d6SSatish Balay } 2741537820f0SBarry Smith 274257b952d6SSatish Balay /* determine ownership of all rows */ 274357b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 274457b952d6SSatish Balay m = mbs*bs; 2745dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 2746b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 2747167e7480SBarry Smith 2748167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 2749167e7480SBarry Smith if (!rank) { 2750167e7480SBarry Smith mmax = rowners[1]; 2751167e7480SBarry Smith for (i=2; i<size; i++) { 2752167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 2753167e7480SBarry Smith } 2754ca02efcfSSatish Balay mmax*=bs; 2755167e7480SBarry Smith } else mmax = m; 2756167e7480SBarry Smith 275757b952d6SSatish Balay rowners[0] = 0; 2758cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 2759cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 276057b952d6SSatish Balay rstart = rowners[rank]; 276157b952d6SSatish Balay rend = rowners[rank+1]; 276257b952d6SSatish Balay 276357b952d6SSatish Balay /* distribute row lengths to all processors */ 276419c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 276557b952d6SSatish Balay if (!rank) { 2766dc231df0SBarry Smith mend = m; 2767dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 2768dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 2769dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 2770dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 2771b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 2772b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 2773dc231df0SBarry Smith for (j=0; j<m; j++) { 2774dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 2775dc231df0SBarry Smith } 2776dc231df0SBarry Smith for (i=1; i<size; i++) { 2777dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 2778dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 2779dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 2780dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 2781dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 2782dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 278357b952d6SSatish Balay procsnz[i] += rowlengths[j]; 278457b952d6SSatish Balay } 2785dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 278657b952d6SSatish Balay } 2787606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 2788dc231df0SBarry Smith } else { 2789dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2790dc231df0SBarry Smith } 279157b952d6SSatish Balay 2792dc231df0SBarry Smith if (!rank) { 279357b952d6SSatish Balay /* determine max buffer needed and allocate it */ 27948a8e0b3aSBarry Smith maxnz = procsnz[0]; 2795cdc0ba36SBarry Smith for (i=1; i<size; i++) { 279657b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 279757b952d6SSatish Balay } 2798b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 279957b952d6SSatish Balay 280057b952d6SSatish Balay /* read in my part of the matrix column indices */ 280157b952d6SSatish Balay nz = procsnz[0]; 280219c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 280357b952d6SSatish Balay mycols = ibuf; 2804cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2805e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2806cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2807cee3aa6bSSatish Balay 280857b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 280957b952d6SSatish Balay for (i=1; i<size-1; i++) { 281057b952d6SSatish Balay nz = procsnz[i]; 2811e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2812b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 281357b952d6SSatish Balay } 281457b952d6SSatish Balay /* read in the stuff for the last proc */ 281557b952d6SSatish Balay if (size != 1) { 281657b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2817e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 281857b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 2819b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 282057b952d6SSatish Balay } 2821606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2822d64ed03dSBarry Smith } else { 282357b952d6SSatish Balay /* determine buffer space needed for message */ 282457b952d6SSatish Balay nz = 0; 282557b952d6SSatish Balay for (i=0; i<m; i++) { 282657b952d6SSatish Balay nz += locrowlens[i]; 282757b952d6SSatish Balay } 282819c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 282957b952d6SSatish Balay mycols = ibuf; 283057b952d6SSatish Balay /* receive message of column indices*/ 2831b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 2832b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 283329bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 283457b952d6SSatish Balay } 283557b952d6SSatish Balay 283657b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2837dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 2838dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 2839dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2840dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 2841dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 284257b952d6SSatish Balay rowcount = 0; nzcount = 0; 284357b952d6SSatish Balay for (i=0; i<mbs; i++) { 284457b952d6SSatish Balay dcount = 0; 284557b952d6SSatish Balay odcount = 0; 284657b952d6SSatish Balay for (j=0; j<bs; j++) { 284757b952d6SSatish Balay kmax = locrowlens[rowcount]; 284857b952d6SSatish Balay for (k=0; k<kmax; k++) { 284957b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 285057b952d6SSatish Balay if (!mask[tmp]) { 285157b952d6SSatish Balay mask[tmp] = 1; 285257b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 285357b952d6SSatish Balay else masked1[dcount++] = tmp; 285457b952d6SSatish Balay } 285557b952d6SSatish Balay } 285657b952d6SSatish Balay rowcount++; 285757b952d6SSatish Balay } 2858cee3aa6bSSatish Balay 285957b952d6SSatish Balay dlens[i] = dcount; 286057b952d6SSatish Balay odlens[i] = odcount; 2861cee3aa6bSSatish Balay 286257b952d6SSatish Balay /* zero out the mask elements we set */ 286357b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 286457b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 286557b952d6SSatish Balay } 2866cee3aa6bSSatish Balay 286757b952d6SSatish Balay /* create our matrix */ 2868f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 2869f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 287078ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 287178ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 287278ae41b4SKris Buschelman 287378ae41b4SKris Buschelman /* Why doesn't this called using ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); */ 2874dc231df0SBarry Smith ierr = MatSetOption(A,MAT_COLUMNS_SORTED);CHKERRQ(ierr); 287557b952d6SSatish Balay 287657b952d6SSatish Balay if (!rank) { 287719c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 287857b952d6SSatish Balay /* read in my part of the matrix numerical values */ 287957b952d6SSatish Balay nz = procsnz[0]; 288057b952d6SSatish Balay vals = buf; 2881cee3aa6bSSatish Balay mycols = ibuf; 2882cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2883e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2884cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2885537820f0SBarry Smith 288657b952d6SSatish Balay /* insert into matrix */ 288757b952d6SSatish Balay jj = rstart*bs; 288857b952d6SSatish Balay for (i=0; i<m; i++) { 2889dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 289057b952d6SSatish Balay mycols += locrowlens[i]; 289157b952d6SSatish Balay vals += locrowlens[i]; 289257b952d6SSatish Balay jj++; 289357b952d6SSatish Balay } 289457b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 289557b952d6SSatish Balay for (i=1; i<size-1; i++) { 289657b952d6SSatish Balay nz = procsnz[i]; 289757b952d6SSatish Balay vals = buf; 2898e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2899ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 290057b952d6SSatish Balay } 290157b952d6SSatish Balay /* the last proc */ 290257b952d6SSatish Balay if (size != 1){ 290357b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2904cee3aa6bSSatish Balay vals = buf; 2905e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 290657b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 2907ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 290857b952d6SSatish Balay } 2909606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2910d64ed03dSBarry Smith } else { 291157b952d6SSatish Balay /* receive numeric values */ 291219c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 291357b952d6SSatish Balay 291457b952d6SSatish Balay /* receive message of values*/ 291557b952d6SSatish Balay vals = buf; 2916cee3aa6bSSatish Balay mycols = ibuf; 2917ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2918ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 291929bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 292057b952d6SSatish Balay 292157b952d6SSatish Balay /* insert into matrix */ 292257b952d6SSatish Balay jj = rstart*bs; 2923cee3aa6bSSatish Balay for (i=0; i<m; i++) { 2924dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 292557b952d6SSatish Balay mycols += locrowlens[i]; 292657b952d6SSatish Balay vals += locrowlens[i]; 292757b952d6SSatish Balay jj++; 292857b952d6SSatish Balay } 292957b952d6SSatish Balay } 2930606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2931606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2932606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2933dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 2934dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 2935dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 29366d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29376d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 293878ae41b4SKris Buschelman 293978ae41b4SKris Buschelman *newmat = A; 29403a40ed3dSBarry Smith PetscFunctionReturn(0); 294157b952d6SSatish Balay } 294257b952d6SSatish Balay 29434a2ae208SSatish Balay #undef __FUNCT__ 29444a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 2945133cdb44SSatish Balay /*@ 2946133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2947133cdb44SSatish Balay 2948133cdb44SSatish Balay Input Parameters: 2949133cdb44SSatish Balay . mat - the matrix 2950133cdb44SSatish Balay . fact - factor 2951133cdb44SSatish Balay 2952fee21e36SBarry Smith Collective on Mat 2953fee21e36SBarry Smith 29548c890885SBarry Smith Level: advanced 29558c890885SBarry Smith 2956133cdb44SSatish Balay Notes: 29578c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 2958133cdb44SSatish Balay 2959133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2960133cdb44SSatish Balay 2961133cdb44SSatish Balay .seealso: MatSetOption() 2962133cdb44SSatish Balay @*/ 2963be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 2964133cdb44SSatish Balay { 2965dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 29665bf65638SKris Buschelman 29675bf65638SKris Buschelman PetscFunctionBegin; 29685bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 29695bf65638SKris Buschelman if (f) { 29705bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 29715bf65638SKris Buschelman } 29725bf65638SKris Buschelman PetscFunctionReturn(0); 29735bf65638SKris Buschelman } 29745bf65638SKris Buschelman 2975be1d678aSKris Buschelman EXTERN_C_BEGIN 29765bf65638SKris Buschelman #undef __FUNCT__ 29775bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 2978be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 29795bf65638SKris Buschelman { 298025fdafccSSatish Balay Mat_MPIBAIJ *baij; 2981133cdb44SSatish Balay 2982133cdb44SSatish Balay PetscFunctionBegin; 2983133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 2984133cdb44SSatish Balay baij->ht_fact = fact; 2985133cdb44SSatish Balay PetscFunctionReturn(0); 2986133cdb44SSatish Balay } 2987be1d678aSKris Buschelman EXTERN_C_END 2988f2a5309cSSatish Balay 29894a2ae208SSatish Balay #undef __FUNCT__ 29904a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 2991be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 2992f2a5309cSSatish Balay { 2993f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2994f2a5309cSSatish Balay PetscFunctionBegin; 2995f2a5309cSSatish Balay *Ad = a->A; 2996f2a5309cSSatish Balay *Ao = a->B; 2997195d93cdSBarry Smith *colmap = a->garray; 2998f2a5309cSSatish Balay PetscFunctionReturn(0); 2999f2a5309cSSatish Balay } 3000