1be1d678aSKris Buschelman #define PETSCMAT_DLL 279bdfe76SSatish Balay 37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h" /*I "petscmat.h" I*/ 479bdfe76SSatish Balay 5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat); 6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat); 7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt); 8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]); 9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []); 10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode); 11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode); 12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]); 14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar); 1593fea6afSBarry Smith 164a2ae208SSatish Balay #undef __FUNCT__ 17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 197843d17aSBarry Smith { 207843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 21dfbe8321SBarry Smith PetscErrorCode ierr; 22985db425SBarry Smith PetscInt i,*idxb = 0; 2387828ca2SBarry Smith PetscScalar *va,*vb; 247843d17aSBarry Smith Vec vtmp; 257843d17aSBarry Smith 267843d17aSBarry Smith PetscFunctionBegin; 27985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 281ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 29985db425SBarry Smith if (idx) { 30192daf7cSBarry Smith for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;} 31985db425SBarry Smith } 327843d17aSBarry Smith 33d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 34d0f46423SBarry Smith if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);} 35985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 361ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 377843d17aSBarry Smith 38d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++){ 39d0f46423SBarry Smith if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);} 407843d17aSBarry Smith } 417843d17aSBarry Smith 421ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 431ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 44985db425SBarry Smith if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);} 45ac355199SBarry Smith ierr = VecDestroy(vtmp);CHKERRQ(ierr); 467843d17aSBarry Smith PetscFunctionReturn(0); 477843d17aSBarry Smith } 487843d17aSBarry Smith 497fc3c18eSBarry Smith EXTERN_C_BEGIN 504a2ae208SSatish Balay #undef __FUNCT__ 514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat) 537fc3c18eSBarry Smith { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 55dfbe8321SBarry Smith PetscErrorCode ierr; 567fc3c18eSBarry Smith 577fc3c18eSBarry Smith PetscFunctionBegin; 587fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 597fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 607fc3c18eSBarry Smith PetscFunctionReturn(0); 617fc3c18eSBarry Smith } 627fc3c18eSBarry Smith EXTERN_C_END 637fc3c18eSBarry Smith 647fc3c18eSBarry Smith EXTERN_C_BEGIN 654a2ae208SSatish Balay #undef __FUNCT__ 664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat) 687fc3c18eSBarry Smith { 697fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 70dfbe8321SBarry Smith PetscErrorCode ierr; 717fc3c18eSBarry Smith 727fc3c18eSBarry Smith PetscFunctionBegin; 737fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 747fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 757fc3c18eSBarry Smith PetscFunctionReturn(0); 767fc3c18eSBarry Smith } 777fc3c18eSBarry Smith EXTERN_C_END 787fc3c18eSBarry Smith 79537820f0SBarry Smith /* 80537820f0SBarry Smith Local utility routine that creates a mapping from the global column 8157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 8257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 8357b952d6SSatish Balay length of colmap equals the global matrix length. 8457b952d6SSatish Balay */ 854a2ae208SSatish Balay #undef __FUNCT__ 864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private" 87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat) 8857b952d6SSatish Balay { 8957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 9057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 916849ba73SBarry Smith PetscErrorCode ierr; 92d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 9357b952d6SSatish Balay 94d64ed03dSBarry Smith PetscFunctionBegin; 95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 96f14a1c24SBarry Smith ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr); 9748e59246SSatish Balay for (i=0; i<nbs; i++){ 980f5bd95cSBarry Smith ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 9948e59246SSatish Balay } 10048e59246SSatish Balay #else 101b24ad042SBarry Smith ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr); 10252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 103b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 104928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 10548e59246SSatish Balay #endif 1063a40ed3dSBarry Smith PetscFunctionReturn(0); 10757b952d6SSatish Balay } 10857b952d6SSatish Balay 10980c1aa95SSatish Balay #define CHUNKSIZE 10 11080c1aa95SSatish Balay 111f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 11280c1aa95SSatish Balay { \ 11380c1aa95SSatish Balay \ 11480c1aa95SSatish Balay brow = row/bs; \ 11580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 116ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 11780c1aa95SSatish Balay bcol = col/bs; \ 11880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 119ab26458aSBarry Smith low = 0; high = nrow; \ 120ab26458aSBarry Smith while (high-low > 3) { \ 121ab26458aSBarry Smith t = (low+high)/2; \ 122ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 123ab26458aSBarry Smith else low = t; \ 124ab26458aSBarry Smith } \ 125ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 12680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 12780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 12880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 129eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 130eada6651SSatish Balay else *bap = value; \ 131ac7a638eSSatish Balay goto a_noinsert; \ 13280c1aa95SSatish Balay } \ 13380c1aa95SSatish Balay } \ 13489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 135085a36d4SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 136421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 13780c1aa95SSatish Balay N = nrow++ - 1; \ 13880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 13980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 14080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1413eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 14280c1aa95SSatish Balay } \ 1433eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 14480c1aa95SSatish Balay rp[_i] = bcol; \ 14580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 146ac7a638eSSatish Balay a_noinsert:; \ 14780c1aa95SSatish Balay ailen[brow] = nrow; \ 14880c1aa95SSatish Balay } 14957b952d6SSatish Balay 150ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 151ac7a638eSSatish Balay { \ 152ac7a638eSSatish Balay brow = row/bs; \ 153ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 154ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 155ac7a638eSSatish Balay bcol = col/bs; \ 156ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 157ac7a638eSSatish Balay low = 0; high = nrow; \ 158ac7a638eSSatish Balay while (high-low > 3) { \ 159ac7a638eSSatish Balay t = (low+high)/2; \ 160ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 161ac7a638eSSatish Balay else low = t; \ 162ac7a638eSSatish Balay } \ 163ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 164ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 165ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 166ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 167ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 168ac7a638eSSatish Balay else *bap = value; \ 169ac7a638eSSatish Balay goto b_noinsert; \ 170ac7a638eSSatish Balay } \ 171ac7a638eSSatish Balay } \ 17289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 173085a36d4SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \ 174421e10b8SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 175085a36d4SBarry Smith CHKMEMQ;\ 176ac7a638eSSatish Balay N = nrow++ - 1; \ 177ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 178ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 179ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1803eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 181ac7a638eSSatish Balay } \ 1823eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 183ac7a638eSSatish Balay rp[_i] = bcol; \ 184ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 185ac7a638eSSatish Balay b_noinsert:; \ 186ac7a638eSSatish Balay bilen[brow] = nrow; \ 187ac7a638eSSatish Balay } 188ac7a638eSSatish Balay 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 19257b952d6SSatish Balay { 19357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 19493fea6afSBarry Smith MatScalar value; 195273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 196dfbe8321SBarry Smith PetscErrorCode ierr; 197b24ad042SBarry Smith PetscInt i,j,row,col; 198d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 199d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart; 200d0f46423SBarry Smith PetscInt cend_orig=mat->cmap->rend,bs=mat->rmap->bs; 20157b952d6SSatish Balay 202eada6651SSatish Balay /* Some Variables required in the macro */ 20380c1aa95SSatish Balay Mat A = baij->A; 20480c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 205b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 2063eda8832SBarry Smith MatScalar *aa=a->a; 207ac7a638eSSatish Balay 208ac7a638eSSatish Balay Mat B = baij->B; 209ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 210b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2113eda8832SBarry Smith MatScalar *ba=b->a; 212ac7a638eSSatish Balay 213b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 214b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2153eda8832SBarry Smith MatScalar *ap,*bap; 21680c1aa95SSatish Balay 217d64ed03dSBarry Smith PetscFunctionBegin; 21857b952d6SSatish Balay for (i=0; i<m; i++) { 2195ef9f2a5SBarry Smith if (im[i] < 0) continue; 2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 221d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 222639f9d9dSBarry Smith #endif 22357b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 22457b952d6SSatish Balay row = im[i] - rstart_orig; 22557b952d6SSatish Balay for (j=0; j<n; j++) { 22657b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 22757b952d6SSatish Balay col = in[j] - cstart_orig; 22857b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 229f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 23080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 23173959e64SBarry Smith } else if (in[j] < 0) continue; 2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 233d0f46423SBarry Smith else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);} 234639f9d9dSBarry Smith #endif 23557b952d6SSatish Balay else { 23657b952d6SSatish Balay if (mat->was_assembled) { 237905e6a2fSBarry Smith if (!baij->colmap) { 238905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 239905e6a2fSBarry Smith } 240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2410f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 242bba1ac68SSatish Balay col = col - 1; 24348e59246SSatish Balay #else 244bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 24548e59246SSatish Balay #endif 24657b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 24757b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2488295de27SSatish Balay col = in[j]; 2499bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2509bf004c3SSatish Balay B = baij->B; 2519bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2529bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2539bf004c3SSatish Balay ba=b->a; 254bba1ac68SSatish Balay } else col += in[j]%bs; 2558295de27SSatish Balay } else col = in[j]; 25657b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 25790da58bdSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 25890da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25957b952d6SSatish Balay } 26057b952d6SSatish Balay } 261d64ed03dSBarry Smith } else { 26290f02eecSBarry Smith if (!baij->donotstash) { 263ff2fd236SBarry Smith if (roworiented) { 264b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 265ff2fd236SBarry Smith } else { 266b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26757b952d6SSatish Balay } 26857b952d6SSatish Balay } 26957b952d6SSatish Balay } 27090f02eecSBarry Smith } 2713a40ed3dSBarry Smith PetscFunctionReturn(0); 27257b952d6SSatish Balay } 27357b952d6SSatish Balay 2744a2ae208SSatish Balay #undef __FUNCT__ 27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 277ab26458aSBarry Smith { 278ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 279dd6ea824SBarry Smith const PetscScalar *value; 280f15d580aSBarry Smith MatScalar *barray=baij->barray; 281273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 282dfbe8321SBarry Smith PetscErrorCode ierr; 283899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 284899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 285d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 286ab26458aSBarry Smith 287b16ae2b1SBarry Smith PetscFunctionBegin; 28830793edcSSatish Balay if(!barray) { 28982502324SSatish Balay ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 29082502324SSatish Balay baij->barray = barray; 29130793edcSSatish Balay } 29230793edcSSatish Balay 293ab26458aSBarry Smith if (roworiented) { 294ab26458aSBarry Smith stepval = (n-1)*bs; 295ab26458aSBarry Smith } else { 296ab26458aSBarry Smith stepval = (m-1)*bs; 297ab26458aSBarry Smith } 298ab26458aSBarry Smith for (i=0; i<m; i++) { 2995ef9f2a5SBarry Smith if (im[i] < 0) continue; 3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 30177431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 302ab26458aSBarry Smith #endif 303ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 304ab26458aSBarry Smith row = im[i] - rstart; 305ab26458aSBarry Smith for (j=0; j<n; j++) { 30615b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 30715b57d14SSatish Balay if ((roworiented) && (n == 1)) { 308f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 30915b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 310f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 31115b57d14SSatish Balay } else { /* Here a copy is required */ 312ab26458aSBarry Smith if (roworiented) { 313ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 314ab26458aSBarry Smith } else { 315ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 316abef11f7SSatish Balay } 31747513183SBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 31847513183SBarry Smith for (jj=0; jj<bs; jj++) { 31930793edcSSatish Balay *barray++ = *value++; 32047513183SBarry Smith } 32147513183SBarry Smith } 32230793edcSSatish Balay barray -=bs2; 32315b57d14SSatish Balay } 324abef11f7SSatish Balay 325abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 326abef11f7SSatish Balay col = in[j] - cstart; 32797e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 328ab26458aSBarry Smith } 3295ef9f2a5SBarry Smith else if (in[j] < 0) continue; 3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 33177431f27SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 332ab26458aSBarry Smith #endif 333ab26458aSBarry Smith else { 334ab26458aSBarry Smith if (mat->was_assembled) { 335ab26458aSBarry Smith if (!baij->colmap) { 336ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 337ab26458aSBarry Smith } 338a5eb4965SSatish Balay 3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 341b24ad042SBarry Smith { PetscInt data; 3420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 34329bbc08cSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 344fa46199cSSatish Balay } 34548e59246SSatish Balay #else 34629bbc08cSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 347a5eb4965SSatish Balay #endif 34848e59246SSatish Balay #endif 349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 3500f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 351fa46199cSSatish Balay col = (col - 1)/bs; 35248e59246SSatish Balay #else 353a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 35448e59246SSatish Balay #endif 355ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 356ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 357ab26458aSBarry Smith col = in[j]; 358ab26458aSBarry Smith } 359ab26458aSBarry Smith } 360ab26458aSBarry Smith else col = in[j]; 36197e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 362ab26458aSBarry Smith } 363ab26458aSBarry Smith } 364d64ed03dSBarry Smith } else { 365ab26458aSBarry Smith if (!baij->donotstash) { 366ff2fd236SBarry Smith if (roworiented) { 3676fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 368ff2fd236SBarry Smith } else { 3696fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 370ff2fd236SBarry Smith } 371abef11f7SSatish Balay } 372ab26458aSBarry Smith } 373ab26458aSBarry Smith } 3743a40ed3dSBarry Smith PetscFunctionReturn(0); 375ab26458aSBarry Smith } 3766fa18ffdSBarry Smith 3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887 378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 3814a2ae208SSatish Balay #undef __FUNCT__ 38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 3840bdbc534SSatish Balay { 3850bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 386273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 387dfbe8321SBarry Smith PetscErrorCode ierr; 388b24ad042SBarry Smith PetscInt i,j,row,col; 389d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 390d0f46423SBarry Smith PetscInt rend_orig=mat->rmap->rend,Nbs=baij->Nbs; 391d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 392329f5518SBarry Smith PetscReal tmp; 3933eda8832SBarry Smith MatScalar **HD = baij->hd,value; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 3964a15367fSSatish Balay #endif 3970bdbc534SSatish Balay 3980bdbc534SSatish Balay PetscFunctionBegin; 3990bdbc534SSatish Balay 4000bdbc534SSatish Balay for (i=0; i<m; i++) { 4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 40229bbc08cSBarry Smith if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 403d0f46423SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4040bdbc534SSatish Balay #endif 4050bdbc534SSatish Balay row = im[i]; 406c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4070bdbc534SSatish Balay for (j=0; j<n; j++) { 4080bdbc534SSatish Balay col = in[j]; 4096fa18ffdSBarry Smith if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 410b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 411c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 412c2760754SSatish Balay h1 = HASH(size,key,tmp); 4130bdbc534SSatish Balay 414c2760754SSatish Balay 415c2760754SSatish Balay idx = h1; 4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 417187ce0cbSSatish Balay insert_ct++; 418187ce0cbSSatish Balay total_ct++; 419187ce0cbSSatish Balay if (HT[idx] != key) { 420187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 421187ce0cbSSatish Balay if (idx == size) { 422187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 423187ce0cbSSatish Balay if (idx == h1) { 42477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 425187ce0cbSSatish Balay } 426187ce0cbSSatish Balay } 427187ce0cbSSatish Balay } 428187ce0cbSSatish Balay #else 429c2760754SSatish Balay if (HT[idx] != key) { 430c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 431c2760754SSatish Balay if (idx == size) { 432c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 433c2760754SSatish Balay if (idx == h1) { 43477431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 435c2760754SSatish Balay } 436c2760754SSatish Balay } 437c2760754SSatish Balay } 438187ce0cbSSatish Balay #endif 439c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 440c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 441c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4420bdbc534SSatish Balay } 4430bdbc534SSatish Balay } else { 4440bdbc534SSatish Balay if (!baij->donotstash) { 445ff2fd236SBarry Smith if (roworiented) { 446b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 447ff2fd236SBarry Smith } else { 448b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 4490bdbc534SSatish Balay } 4500bdbc534SSatish Balay } 4510bdbc534SSatish Balay } 4520bdbc534SSatish Balay } 4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 454187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 455187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 456187ce0cbSSatish Balay #endif 4570bdbc534SSatish Balay PetscFunctionReturn(0); 4580bdbc534SSatish Balay } 4590bdbc534SSatish Balay 4604a2ae208SSatish Balay #undef __FUNCT__ 46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4630bdbc534SSatish Balay { 4640bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 465273d9f13SBarry Smith PetscTruth roworiented = baij->roworiented; 466dfbe8321SBarry Smith PetscErrorCode ierr; 467b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 468899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 469d0f46423SBarry Smith PetscInt rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 470b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 471329f5518SBarry Smith PetscReal tmp; 4723eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 473dd6ea824SBarry Smith const PetscScalar *v_t,*value; 4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 475b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4764a15367fSSatish Balay #endif 4770bdbc534SSatish Balay 478d0a41580SSatish Balay PetscFunctionBegin; 479d0a41580SSatish Balay 4800bdbc534SSatish Balay if (roworiented) { 4810bdbc534SSatish Balay stepval = (n-1)*bs; 4820bdbc534SSatish Balay } else { 4830bdbc534SSatish Balay stepval = (m-1)*bs; 4840bdbc534SSatish Balay } 4850bdbc534SSatish Balay for (i=0; i<m; i++) { 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 48777431f27SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 48877431f27SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 4890bdbc534SSatish Balay #endif 4900bdbc534SSatish Balay row = im[i]; 491ab715e2cSSatish Balay v_t = v + i*nbs2; 492c2760754SSatish Balay if (row >= rstart && row < rend) { 4930bdbc534SSatish Balay for (j=0; j<n; j++) { 4940bdbc534SSatish Balay col = in[j]; 4950bdbc534SSatish Balay 4960bdbc534SSatish Balay /* Look up into the Hash Table */ 497c2760754SSatish Balay key = row*Nbs+col+1; 498c2760754SSatish Balay h1 = HASH(size,key,tmp); 4990bdbc534SSatish Balay 500c2760754SSatish Balay idx = h1; 5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 502187ce0cbSSatish Balay total_ct++; 503187ce0cbSSatish Balay insert_ct++; 504187ce0cbSSatish Balay if (HT[idx] != key) { 505187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 506187ce0cbSSatish Balay if (idx == size) { 507187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 508187ce0cbSSatish Balay if (idx == h1) { 50977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 510187ce0cbSSatish Balay } 511187ce0cbSSatish Balay } 512187ce0cbSSatish Balay } 513187ce0cbSSatish Balay #else 514c2760754SSatish Balay if (HT[idx] != key) { 515c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++); 516c2760754SSatish Balay if (idx == size) { 517c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++); 518c2760754SSatish Balay if (idx == h1) { 51977431f27SBarry Smith SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 520c2760754SSatish Balay } 521c2760754SSatish Balay } 522c2760754SSatish Balay } 523187ce0cbSSatish Balay #endif 524c2760754SSatish Balay baij_a = HD[idx]; 5250bdbc534SSatish Balay if (roworiented) { 526c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 527187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 528187ce0cbSSatish Balay value = v_t; 529187ce0cbSSatish Balay v_t += bs; 530fef45726SSatish Balay if (addv == ADD_VALUES) { 531c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 532c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 533fef45726SSatish Balay baij_a[jj] += *value++; 534b4cc0f5aSSatish Balay } 535b4cc0f5aSSatish Balay } 536fef45726SSatish Balay } else { 537c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 538c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 539fef45726SSatish Balay baij_a[jj] = *value++; 540fef45726SSatish Balay } 541fef45726SSatish Balay } 542fef45726SSatish Balay } 5430bdbc534SSatish Balay } else { 5440bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 545fef45726SSatish Balay if (addv == ADD_VALUES) { 546b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 5470bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 548fef45726SSatish Balay baij_a[jj] += *value++; 549fef45726SSatish Balay } 550fef45726SSatish Balay } 551fef45726SSatish Balay } else { 552fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 553fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 554fef45726SSatish Balay baij_a[jj] = *value++; 555fef45726SSatish Balay } 556b4cc0f5aSSatish Balay } 5570bdbc534SSatish Balay } 5580bdbc534SSatish Balay } 5590bdbc534SSatish Balay } 5600bdbc534SSatish Balay } else { 5610bdbc534SSatish Balay if (!baij->donotstash) { 5620bdbc534SSatish Balay if (roworiented) { 5638798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5640bdbc534SSatish Balay } else { 5658798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 5660bdbc534SSatish Balay } 5670bdbc534SSatish Balay } 5680bdbc534SSatish Balay } 5690bdbc534SSatish Balay } 5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 571187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 572187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 573187ce0cbSSatish Balay #endif 5740bdbc534SSatish Balay PetscFunctionReturn(0); 5750bdbc534SSatish Balay } 576133cdb44SSatish Balay 5774a2ae208SSatish Balay #undef __FUNCT__ 5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 580d6de1c52SSatish Balay { 581d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 5826849ba73SBarry Smith PetscErrorCode ierr; 583d0f46423SBarry Smith PetscInt bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 584d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 585d6de1c52SSatish Balay 586133cdb44SSatish Balay PetscFunctionBegin; 587d6de1c52SSatish Balay for (i=0; i<m; i++) { 58897e567efSBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 589d0f46423SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 590d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 591d6de1c52SSatish Balay row = idxm[i] - bsrstart; 592d6de1c52SSatish Balay for (j=0; j<n; j++) { 59397e567efSBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 594d0f46423SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 595d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 596d6de1c52SSatish Balay col = idxn[j] - bscstart; 59798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 598d64ed03dSBarry Smith } else { 599905e6a2fSBarry Smith if (!baij->colmap) { 600905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 601905e6a2fSBarry Smith } 602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 6030f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 604fa46199cSSatish Balay data --; 60548e59246SSatish Balay #else 60648e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 60748e59246SSatish Balay #endif 60848e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 609d9d09a02SSatish Balay else { 61048e59246SSatish Balay col = data + idxn[j]%bs; 61198dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 612d6de1c52SSatish Balay } 613d6de1c52SSatish Balay } 614d6de1c52SSatish Balay } 615d64ed03dSBarry Smith } else { 61629bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"Only local values currently supported"); 617d6de1c52SSatish Balay } 618d6de1c52SSatish Balay } 6193a40ed3dSBarry Smith PetscFunctionReturn(0); 620d6de1c52SSatish Balay } 621d6de1c52SSatish Balay 6224a2ae208SSatish Balay #undef __FUNCT__ 6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 625d6de1c52SSatish Balay { 626d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 627d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 628dfbe8321SBarry Smith PetscErrorCode ierr; 629d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 630329f5518SBarry Smith PetscReal sum = 0.0; 6313eda8832SBarry Smith MatScalar *v; 632d6de1c52SSatish Balay 633d64ed03dSBarry Smith PetscFunctionBegin; 634d6de1c52SSatish Balay if (baij->size == 1) { 635064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 636d6de1c52SSatish Balay } else { 637d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 638d6de1c52SSatish Balay v = amat->a; 6398a62d963SHong Zhang nz = amat->nz*bs2; 6408a62d963SHong Zhang for (i=0; i<nz; i++) { 641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 642329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 643d6de1c52SSatish Balay #else 644d6de1c52SSatish Balay sum += (*v)*(*v); v++; 645d6de1c52SSatish Balay #endif 646d6de1c52SSatish Balay } 647d6de1c52SSatish Balay v = bmat->a; 6488a62d963SHong Zhang nz = bmat->nz*bs2; 6498a62d963SHong Zhang for (i=0; i<nz; i++) { 650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 651329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 652d6de1c52SSatish Balay #else 653d6de1c52SSatish Balay sum += (*v)*(*v); v++; 654d6de1c52SSatish Balay #endif 655d6de1c52SSatish Balay } 6567adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 657064f8208SBarry Smith *nrm = sqrt(*nrm); 6588a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6598a62d963SHong Zhang PetscReal *tmp,*tmp2; 660899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 661d0f46423SBarry Smith ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr); 662d0f46423SBarry Smith tmp2 = tmp + mat->cmap->N; 663d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 6648a62d963SHong Zhang v = amat->a; jj = amat->j; 6658a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 6668a62d963SHong Zhang for (j=0; j<bs; j++){ 6678a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 6688a62d963SHong Zhang for (row=0; row<bs; row++){ 6698a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6708a62d963SHong Zhang } 6718a62d963SHong Zhang } 6728a62d963SHong Zhang jj++; 6738a62d963SHong Zhang } 6748a62d963SHong Zhang v = bmat->a; jj = bmat->j; 6758a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 6768a62d963SHong Zhang for (j=0; j<bs; j++){ 6778a62d963SHong Zhang col = bs*garray[*jj] + j; 6788a62d963SHong Zhang for (row=0; row<bs; row++){ 6798a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 6808a62d963SHong Zhang } 6818a62d963SHong Zhang } 6828a62d963SHong Zhang jj++; 6838a62d963SHong Zhang } 684d0f46423SBarry Smith ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr); 6858a62d963SHong Zhang *nrm = 0.0; 686d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 6878a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6888a62d963SHong Zhang } 6898a62d963SHong Zhang ierr = PetscFree(tmp);CHKERRQ(ierr); 6908a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 691577dd1f9SKris Buschelman PetscReal *sums; 692577dd1f9SKris Buschelman ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr) 6938a62d963SHong Zhang sum = 0.0; 6948a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 6958a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 6968a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 6978a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 6988a62d963SHong Zhang for (i=0; i<nz; i++) { 6998a62d963SHong Zhang for (col=0; col<bs; col++){ 7008a62d963SHong Zhang for (row=0; row<bs; row++){ 7018a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7028a62d963SHong Zhang } 7038a62d963SHong Zhang } 7048a62d963SHong Zhang } 7058a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7068a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7078a62d963SHong Zhang for (i=0; i<nz; i++) { 7088a62d963SHong Zhang for (col=0; col<bs; col++){ 7098a62d963SHong Zhang for (row=0; row<bs; row++){ 7108a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7118a62d963SHong Zhang } 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang for (row=0; row<bs; row++){ 7158a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7168a62d963SHong Zhang } 7178a62d963SHong Zhang } 7187adad957SLisandro Dalcin ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr); 719577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 720d64ed03dSBarry Smith } else { 72129bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"No support for this norm yet"); 722d6de1c52SSatish Balay } 723d64ed03dSBarry Smith } 7243a40ed3dSBarry Smith PetscFunctionReturn(0); 725d6de1c52SSatish Balay } 72657b952d6SSatish Balay 727fef45726SSatish Balay /* 728fef45726SSatish Balay Creates the hash table, and sets the table 729fef45726SSatish Balay This table is created only once. 730fef45726SSatish Balay If new entried need to be added to the matrix 731fef45726SSatish Balay then the hash table has to be destroyed and 732fef45726SSatish Balay recreated. 733fef45726SSatish Balay */ 7344a2ae208SSatish Balay #undef __FUNCT__ 7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 737596b8d2eSBarry Smith { 738596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 739596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 740596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data; 741b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 7426849ba73SBarry Smith PetscErrorCode ierr; 743899cda47SBarry Smith PetscInt size,bs2=baij->bs2,rstart=baij->rstartbs; 744899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 745b24ad042SBarry Smith PetscInt *HT,key; 7463eda8832SBarry Smith MatScalar **HD; 747329f5518SBarry Smith PetscReal tmp; 7486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 749b24ad042SBarry Smith PetscInt ct=0,max=0; 7504a15367fSSatish Balay #endif 751fef45726SSatish Balay 752d64ed03dSBarry Smith PetscFunctionBegin; 753b24ad042SBarry Smith baij->ht_size=(PetscInt)(factor*nz); 7540bdbc534SSatish Balay size = baij->ht_size; 755fef45726SSatish Balay 7560bdbc534SSatish Balay if (baij->ht) { 7570bdbc534SSatish Balay PetscFunctionReturn(0); 758596b8d2eSBarry Smith } 7590bdbc534SSatish Balay 760fef45726SSatish Balay /* Allocate Memory for Hash Table */ 761b24ad042SBarry Smith ierr = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr); 762b24ad042SBarry Smith baij->ht = (PetscInt*)(baij->hd + size); 763b9e4cc15SSatish Balay HD = baij->hd; 764a07cd24cSSatish Balay HT = baij->ht; 765b9e4cc15SSatish Balay 766b9e4cc15SSatish Balay 767b24ad042SBarry Smith ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr); 7680bdbc534SSatish Balay 769596b8d2eSBarry Smith 770596b8d2eSBarry Smith /* Loop Over A */ 7710bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 772596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 7730bdbc534SSatish Balay row = i+rstart; 7740bdbc534SSatish Balay col = aj[j]+cstart; 775596b8d2eSBarry Smith 776187ce0cbSSatish Balay key = row*Nbs + col + 1; 777c2760754SSatish Balay h1 = HASH(size,key,tmp); 7780bdbc534SSatish Balay for (k=0; k<size; k++){ 779958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 7800bdbc534SSatish Balay HT[(h1+k)%size] = key; 7810bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 782596b8d2eSBarry Smith break; 7836cf91177SBarry Smith #if defined(PETSC_USE_INFO) 784187ce0cbSSatish Balay } else { 785187ce0cbSSatish Balay ct++; 786187ce0cbSSatish Balay #endif 787596b8d2eSBarry Smith } 788187ce0cbSSatish Balay } 7896cf91177SBarry Smith #if defined(PETSC_USE_INFO) 790187ce0cbSSatish Balay if (k> max) max = k; 791187ce0cbSSatish Balay #endif 792596b8d2eSBarry Smith } 793596b8d2eSBarry Smith } 794596b8d2eSBarry Smith /* Loop Over B */ 7950bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 796596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 7970bdbc534SSatish Balay row = i+rstart; 7980bdbc534SSatish Balay col = garray[bj[j]]; 799187ce0cbSSatish Balay key = row*Nbs + col + 1; 800c2760754SSatish Balay h1 = HASH(size,key,tmp); 8010bdbc534SSatish Balay for (k=0; k<size; k++){ 802958c9bccSBarry Smith if (!HT[(h1+k)%size]) { 8030bdbc534SSatish Balay HT[(h1+k)%size] = key; 8040bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 805596b8d2eSBarry Smith break; 8066cf91177SBarry Smith #if defined(PETSC_USE_INFO) 807187ce0cbSSatish Balay } else { 808187ce0cbSSatish Balay ct++; 809187ce0cbSSatish Balay #endif 810596b8d2eSBarry Smith } 811187ce0cbSSatish Balay } 8126cf91177SBarry Smith #if defined(PETSC_USE_INFO) 813187ce0cbSSatish Balay if (k> max) max = k; 814187ce0cbSSatish Balay #endif 815596b8d2eSBarry Smith } 816596b8d2eSBarry Smith } 817596b8d2eSBarry Smith 818596b8d2eSBarry Smith /* Print Summary */ 8196cf91177SBarry Smith #if defined(PETSC_USE_INFO) 820c38d4ed2SBarry Smith for (i=0,j=0; i<size; i++) { 821596b8d2eSBarry Smith if (HT[i]) {j++;} 822c38d4ed2SBarry Smith } 8231e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 824187ce0cbSSatish Balay #endif 8253a40ed3dSBarry Smith PetscFunctionReturn(0); 826596b8d2eSBarry Smith } 82757b952d6SSatish Balay 8284a2ae208SSatish Balay #undef __FUNCT__ 8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 831bbb85fb3SSatish Balay { 832bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 833dfbe8321SBarry Smith PetscErrorCode ierr; 834b24ad042SBarry Smith PetscInt nstash,reallocs; 835bbb85fb3SSatish Balay InsertMode addv; 836bbb85fb3SSatish Balay 837bbb85fb3SSatish Balay PetscFunctionBegin; 838bbb85fb3SSatish Balay if (baij->donotstash) { 839bbb85fb3SSatish Balay PetscFunctionReturn(0); 840bbb85fb3SSatish Balay } 841bbb85fb3SSatish Balay 842bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 8437adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr); 844bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 84529bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added"); 846bbb85fb3SSatish Balay } 847bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 848bbb85fb3SSatish Balay 849d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8501e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 8518798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8521e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 85346680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 8541e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 855bbb85fb3SSatish Balay PetscFunctionReturn(0); 856bbb85fb3SSatish Balay } 857bbb85fb3SSatish Balay 8584a2ae208SSatish Balay #undef __FUNCT__ 8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 861bbb85fb3SSatish Balay { 862bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 86391c97fd4SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data; 8646849ba73SBarry Smith PetscErrorCode ierr; 865b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 866e44c0bd4SBarry Smith PetscInt *row,*col; 867e44c0bd4SBarry Smith PetscTruth r1,r2,r3,other_disassembled; 8683eda8832SBarry Smith MatScalar *val; 869bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 870b24ad042SBarry Smith PetscMPIInt n; 871bbb85fb3SSatish Balay 87291c97fd4SSatish Balay /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 873bbb85fb3SSatish Balay PetscFunctionBegin; 874bbb85fb3SSatish Balay if (!baij->donotstash) { 875a2d1c673SSatish Balay while (1) { 8768798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 877a2d1c673SSatish Balay if (!flg) break; 878a2d1c673SSatish Balay 879bbb85fb3SSatish Balay for (i=0; i<n;) { 880bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 881bbb85fb3SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 882bbb85fb3SSatish Balay if (j < n) ncols = j-i; 883bbb85fb3SSatish Balay else ncols = n-i; 884bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 88597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 886bbb85fb3SSatish Balay i = j; 887bbb85fb3SSatish Balay } 888bbb85fb3SSatish Balay } 8898798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 890a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 891a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 892a2d1c673SSatish Balay restore the original flags */ 893a2d1c673SSatish Balay r1 = baij->roworiented; 894a2d1c673SSatish Balay r2 = a->roworiented; 89591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 8967c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8977c922b88SBarry Smith a->roworiented = PETSC_FALSE; 89891c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 899a2d1c673SSatish Balay while (1) { 9008798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 901a2d1c673SSatish Balay if (!flg) break; 902a2d1c673SSatish Balay 903a2d1c673SSatish Balay for (i=0; i<n;) { 904a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 905a2d1c673SSatish Balay for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; } 906a2d1c673SSatish Balay if (j < n) ncols = j-i; 907a2d1c673SSatish Balay else ncols = n-i; 90897e5c40aSBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 909a2d1c673SSatish Balay i = j; 910a2d1c673SSatish Balay } 911a2d1c673SSatish Balay } 9128798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 913a2d1c673SSatish Balay baij->roworiented = r1; 914a2d1c673SSatish Balay a->roworiented = r2; 91591c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 916bbb85fb3SSatish Balay } 917bbb85fb3SSatish Balay 918bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 919bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 920bbb85fb3SSatish Balay 921bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 922bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 923bbb85fb3SSatish Balay /* 924bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 925bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 926bbb85fb3SSatish Balay */ 927bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 9287adad957SLisandro Dalcin ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr); 929bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 930bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 931bbb85fb3SSatish Balay } 932bbb85fb3SSatish Balay } 933bbb85fb3SSatish Balay 934bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 935bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 936bbb85fb3SSatish Balay } 93791c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */ 938bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 939bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 940bbb85fb3SSatish Balay 9416cf91177SBarry Smith #if defined(PETSC_USE_INFO) 942bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9431e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 944bbb85fb3SSatish Balay baij->ht_total_ct = 0; 945bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 946bbb85fb3SSatish Balay } 947bbb85fb3SSatish Balay #endif 948bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 949bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 950bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 951bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 952bbb85fb3SSatish Balay } 953bbb85fb3SSatish Balay 954606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 955606d414cSSatish Balay baij->rowvalues = 0; 956bbb85fb3SSatish Balay PetscFunctionReturn(0); 957bbb85fb3SSatish Balay } 95857b952d6SSatish Balay 9594a2ae208SSatish Balay #undef __FUNCT__ 9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 96257b952d6SSatish Balay { 96357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 964dfbe8321SBarry Smith PetscErrorCode ierr; 965b24ad042SBarry Smith PetscMPIInt size = baij->size,rank = baij->rank; 966d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 96732077d6dSBarry Smith PetscTruth iascii,isdraw; 968b0a32e0cSBarry Smith PetscViewer sviewer; 969f3ef73ceSBarry Smith PetscViewerFormat format; 97057b952d6SSatish Balay 971d64ed03dSBarry Smith PetscFunctionBegin; 97232077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 973fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 97432077d6dSBarry Smith if (iascii) { 975b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 976456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9774e220ebcSLois Curfman McInnes MatInfo info; 9787adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr); 979d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 98077431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 981d0f46423SBarry Smith rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs, 982d0f46423SBarry Smith mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 983d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 98477431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 985d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 98677431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr); 987b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 98807d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 98957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9903a40ed3dSBarry Smith PetscFunctionReturn(0); 991fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 99277431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 9933a40ed3dSBarry Smith PetscFunctionReturn(0); 99404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 99504929863SHong Zhang PetscFunctionReturn(0); 99657b952d6SSatish Balay } 99757b952d6SSatish Balay } 99857b952d6SSatish Balay 9990f5bd95cSBarry Smith if (isdraw) { 1000b0a32e0cSBarry Smith PetscDraw draw; 100157b952d6SSatish Balay PetscTruth isnull; 1002b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1003b0a32e0cSBarry Smith ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 100457b952d6SSatish Balay } 100557b952d6SSatish Balay 100657b952d6SSatish Balay if (size == 1) { 10077adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr); 100857b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 1009d64ed03dSBarry Smith } else { 101057b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 101157b952d6SSatish Balay Mat A; 101257b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1013d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10143eda8832SBarry Smith MatScalar *a; 101557b952d6SSatish Balay 1016f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1017f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10187adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr); 101957b952d6SSatish Balay if (!rank) { 1020f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1021d64ed03dSBarry Smith } else { 1022f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 102357b952d6SSatish Balay } 1024f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 1025d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 102652e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr); 102757b952d6SSatish Balay 102857b952d6SSatish Balay /* copy over the A part */ 102957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 103057b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1031b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 103257b952d6SSatish Balay 103357b952d6SSatish Balay for (i=0; i<mbs; i++) { 1034899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 103557b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 103657b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1037899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 103857b952d6SSatish Balay for (k=0; k<bs; k++) { 103997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1040cee3aa6bSSatish Balay col++; a += bs; 104157b952d6SSatish Balay } 104257b952d6SSatish Balay } 104357b952d6SSatish Balay } 104457b952d6SSatish Balay /* copy over the B part */ 104557b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 104657b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 104757b952d6SSatish Balay for (i=0; i<mbs; i++) { 1048899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 104957b952d6SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 105057b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 105157b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 105257b952d6SSatish Balay for (k=0; k<bs; k++) { 105397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1054cee3aa6bSSatish Balay col++; a += bs; 105557b952d6SSatish Balay } 105657b952d6SSatish Balay } 105757b952d6SSatish Balay } 1058606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10596d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10606d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 106155843e3eSBarry Smith /* 106255843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1063b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106455843e3eSBarry Smith */ 1065b0a32e0cSBarry Smith ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr); 1066f14a1c24SBarry Smith if (!rank) { 10677adad957SLisandro Dalcin ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr); 10686831982aSBarry Smith ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 106957b952d6SSatish Balay } 1070b0a32e0cSBarry Smith ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr); 107157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 107257b952d6SSatish Balay } 10733a40ed3dSBarry Smith PetscFunctionReturn(0); 107457b952d6SSatish Balay } 107557b952d6SSatish Balay 10764a2ae208SSatish Balay #undef __FUNCT__ 10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 107957b952d6SSatish Balay { 1080dfbe8321SBarry Smith PetscErrorCode ierr; 108132077d6dSBarry Smith PetscTruth iascii,isdraw,issocket,isbinary; 108257b952d6SSatish Balay 1083d64ed03dSBarry Smith PetscFunctionBegin; 108432077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 1085fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr); 1086b0a32e0cSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr); 1087fb9695e5SSatish Balay ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr); 108832077d6dSBarry Smith if (iascii || isdraw || issocket || isbinary) { 10897b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 10905cd90555SBarry Smith } else { 109179a5c55eSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name); 109257b952d6SSatish Balay } 10933a40ed3dSBarry Smith PetscFunctionReturn(0); 109457b952d6SSatish Balay } 109557b952d6SSatish Balay 10964a2ae208SSatish Balay #undef __FUNCT__ 10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 109979bdfe76SSatish Balay { 110079bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1101dfbe8321SBarry Smith PetscErrorCode ierr; 110279bdfe76SSatish Balay 1103d64ed03dSBarry Smith PetscFunctionBegin; 1104aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1105d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 110679bdfe76SSatish Balay #endif 11078798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 11088798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 110979bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 111079bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 11129c666560SBarry Smith if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);} 111348e59246SSatish Balay #else 111405b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 111548e59246SSatish Balay #endif 111605b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 1117606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1118606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 111905b42c5fSBarry Smith ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 112005b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 112105b42c5fSBarry Smith ierr = PetscFree(baij->hd);CHKERRQ(ierr); 1122899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1123606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1124901853e0SKris Buschelman 1125dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1126901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr); 1127901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr); 1128901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr); 1129901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr); 1130aac34f13SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr); 1131901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr); 1132901853e0SKris Buschelman ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr); 11333a40ed3dSBarry Smith PetscFunctionReturn(0); 113479bdfe76SSatish Balay } 113579bdfe76SSatish Balay 11364a2ae208SSatish Balay #undef __FUNCT__ 11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1139cee3aa6bSSatish Balay { 1140cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1141dfbe8321SBarry Smith PetscErrorCode ierr; 1142b24ad042SBarry Smith PetscInt nt; 1143cee3aa6bSSatish Balay 1144d64ed03dSBarry Smith PetscFunctionBegin; 1145e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1146d0f46423SBarry Smith if (nt != A->cmap->n) { 114729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 114847b4a8eaSLois Curfman McInnes } 1149e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1150d0f46423SBarry Smith if (nt != A->rmap->n) { 115129bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 115247b4a8eaSLois Curfman McInnes } 1153ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1154f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1155ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1156f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 11573a40ed3dSBarry Smith PetscFunctionReturn(0); 1158cee3aa6bSSatish Balay } 1159cee3aa6bSSatish Balay 11604a2ae208SSatish Balay #undef __FUNCT__ 11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1163cee3aa6bSSatish Balay { 1164cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1165dfbe8321SBarry Smith PetscErrorCode ierr; 1166d64ed03dSBarry Smith 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1169f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1170ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1171f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11723a40ed3dSBarry Smith PetscFunctionReturn(0); 1173cee3aa6bSSatish Balay } 1174cee3aa6bSSatish Balay 11754a2ae208SSatish Balay #undef __FUNCT__ 11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1178cee3aa6bSSatish Balay { 1179cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1180dfbe8321SBarry Smith PetscErrorCode ierr; 1181a5ff213dSBarry Smith PetscTruth merged; 1182cee3aa6bSSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1185cee3aa6bSSatish Balay /* do nondiagonal part */ 11867c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1187a5ff213dSBarry Smith if (!merged) { 1188cee3aa6bSSatish Balay /* send it on its way */ 1189ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* do local part */ 11917c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1192cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1193a5ff213dSBarry Smith /* inserted in yy until the next line */ 1194ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1195a5ff213dSBarry Smith } else { 1196a5ff213dSBarry Smith /* do local part */ 1197a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1198a5ff213dSBarry Smith /* send it on its way */ 1199ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1200a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1201ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1202a5ff213dSBarry Smith } 12033a40ed3dSBarry Smith PetscFunctionReturn(0); 1204cee3aa6bSSatish Balay } 1205cee3aa6bSSatish Balay 12064a2ae208SSatish Balay #undef __FUNCT__ 12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1209cee3aa6bSSatish Balay { 1210cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1211dfbe8321SBarry Smith PetscErrorCode ierr; 1212cee3aa6bSSatish Balay 1213d64ed03dSBarry Smith PetscFunctionBegin; 1214cee3aa6bSSatish Balay /* do nondiagonal part */ 12157c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1216cee3aa6bSSatish Balay /* send it on its way */ 1217ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1218cee3aa6bSSatish Balay /* do local part */ 12197c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1220cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1221cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1222cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1223ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226cee3aa6bSSatish Balay 1227cee3aa6bSSatish Balay /* 1228cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1229cee3aa6bSSatish Balay diagonal block 1230cee3aa6bSSatish Balay */ 12314a2ae208SSatish Balay #undef __FUNCT__ 12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1234cee3aa6bSSatish Balay { 1235cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1236dfbe8321SBarry Smith PetscErrorCode ierr; 1237d64ed03dSBarry Smith 1238d64ed03dSBarry Smith PetscFunctionBegin; 1239d0f46423SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 12403a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12413a40ed3dSBarry Smith PetscFunctionReturn(0); 1242cee3aa6bSSatish Balay } 1243cee3aa6bSSatish Balay 12444a2ae208SSatish Balay #undef __FUNCT__ 12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1247cee3aa6bSSatish Balay { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1249dfbe8321SBarry Smith PetscErrorCode ierr; 1250d64ed03dSBarry Smith 1251d64ed03dSBarry Smith PetscFunctionBegin; 1252f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1253f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 12543a40ed3dSBarry Smith PetscFunctionReturn(0); 1255cee3aa6bSSatish Balay } 1256026e39d0SSatish Balay 12574a2ae208SSatish Balay #undef __FUNCT__ 12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1260acdf5bf4SSatish Balay { 1261acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 126287828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 12636849ba73SBarry Smith PetscErrorCode ierr; 1264d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1265d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1266899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1267acdf5bf4SSatish Balay 1268d64ed03dSBarry Smith PetscFunctionBegin; 1269abc0a331SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1270acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1271acdf5bf4SSatish Balay 1272acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1273acdf5bf4SSatish Balay /* 1274acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1275acdf5bf4SSatish Balay */ 1276acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1277b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1278bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1279acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1280acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1281acdf5bf4SSatish Balay } 1282b24ad042SBarry Smith ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr); 1283b24ad042SBarry Smith mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2); 1284acdf5bf4SSatish Balay } 1285acdf5bf4SSatish Balay 128629bbc08cSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows") 1287d9d09a02SSatish Balay lrow = row - brstart; 1288acdf5bf4SSatish Balay 1289acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1290acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1291acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1292f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1293f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1294acdf5bf4SSatish Balay nztot = nzA + nzB; 1295acdf5bf4SSatish Balay 1296acdf5bf4SSatish Balay cmap = mat->garray; 1297acdf5bf4SSatish Balay if (v || idx) { 1298acdf5bf4SSatish Balay if (nztot) { 1299acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1300b24ad042SBarry Smith PetscInt imark = -1; 1301acdf5bf4SSatish Balay if (v) { 1302acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1303acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1304d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1305acdf5bf4SSatish Balay else break; 1306acdf5bf4SSatish Balay } 1307acdf5bf4SSatish Balay imark = i; 1308acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1309acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1310acdf5bf4SSatish Balay } 1311acdf5bf4SSatish Balay if (idx) { 1312acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1313acdf5bf4SSatish Balay if (imark > -1) { 1314acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1315bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1316acdf5bf4SSatish Balay } 1317acdf5bf4SSatish Balay } else { 1318acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1319d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1320d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1321acdf5bf4SSatish Balay else break; 1322acdf5bf4SSatish Balay } 1323acdf5bf4SSatish Balay imark = i; 1324acdf5bf4SSatish Balay } 1325d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1326d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1327acdf5bf4SSatish Balay } 1328d64ed03dSBarry Smith } else { 1329d212a18eSSatish Balay if (idx) *idx = 0; 1330d212a18eSSatish Balay if (v) *v = 0; 1331d212a18eSSatish Balay } 1332acdf5bf4SSatish Balay } 1333acdf5bf4SSatish Balay *nz = nztot; 1334f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1335f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13363a40ed3dSBarry Smith PetscFunctionReturn(0); 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay 13394a2ae208SSatish Balay #undef __FUNCT__ 13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1342acdf5bf4SSatish Balay { 1343acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1344d64ed03dSBarry Smith 1345d64ed03dSBarry Smith PetscFunctionBegin; 1346abc0a331SBarry Smith if (!baij->getrowactive) { 134729bbc08cSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1348acdf5bf4SSatish Balay } 1349acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13503a40ed3dSBarry Smith PetscFunctionReturn(0); 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay 13534a2ae208SSatish Balay #undef __FUNCT__ 13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 135658667388SSatish Balay { 135758667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1358dfbe8321SBarry Smith PetscErrorCode ierr; 1359d64ed03dSBarry Smith 1360d64ed03dSBarry Smith PetscFunctionBegin; 136158667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 136258667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13633a40ed3dSBarry Smith PetscFunctionReturn(0); 136458667388SSatish Balay } 13650ac07820SSatish Balay 13664a2ae208SSatish Balay #undef __FUNCT__ 13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13690ac07820SSatish Balay { 13704e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 13714e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1372dfbe8321SBarry Smith PetscErrorCode ierr; 1373329f5518SBarry Smith PetscReal isend[5],irecv[5]; 13740ac07820SSatish Balay 1375d64ed03dSBarry Smith PetscFunctionBegin; 1376d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 13774e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13780e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1379de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13804e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13810e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1382de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13830ac07820SSatish Balay if (flag == MAT_LOCAL) { 13844e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13854e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 13864e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 13874e220ebcSLois Curfman McInnes info->memory = isend[3]; 13884e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 13890ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 13907adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr); 13914e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13924e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 13934e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 13944e220ebcSLois Curfman McInnes info->memory = irecv[3]; 13954e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 13960ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 13977adad957SLisandro Dalcin ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr); 13984e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 13994e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14004e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14014e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14024e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1403d41123aaSBarry Smith } else { 140477431f27SBarry Smith SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 14050ac07820SSatish Balay } 14064e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14074e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14084e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14093a40ed3dSBarry Smith PetscFunctionReturn(0); 14100ac07820SSatish Balay } 14110ac07820SSatish Balay 14124a2ae208SSatish Balay #undef __FUNCT__ 14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg) 141558667388SSatish Balay { 141658667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1417dfbe8321SBarry Smith PetscErrorCode ierr; 141858667388SSatish Balay 1419d64ed03dSBarry Smith PetscFunctionBegin; 142012c028f9SKris Buschelman switch (op) { 1421512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 142212c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 142328b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1424a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 142512c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 14264e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14274e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 142812c028f9SKris Buschelman break; 142912c028f9SKris Buschelman case MAT_ROW_ORIENTED: 14304e0d8c25SBarry Smith a->roworiented = flg; 14314e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 14324e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 143312c028f9SKris Buschelman break; 14344e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1435290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 143612c028f9SKris Buschelman break; 143712c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 14384e0d8c25SBarry Smith a->donotstash = flg; 143912c028f9SKris Buschelman break; 144012c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14414e0d8c25SBarry Smith a->ht_flag = flg; 144212c028f9SKris Buschelman break; 144377e54ba9SKris Buschelman case MAT_SYMMETRIC: 144477e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14452188ac68SBarry Smith case MAT_HERMITIAN: 14462188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 14474e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 144877e54ba9SKris Buschelman break; 144912c028f9SKris Buschelman default: 1450ad86a440SBarry Smith SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op); 1451d64ed03dSBarry Smith } 14523a40ed3dSBarry Smith PetscFunctionReturn(0); 145358667388SSatish Balay } 145458667388SSatish Balay 14554a2ae208SSatish Balay #undef __FUNCT__ 14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ(" 1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 14580ac07820SSatish Balay { 14590ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 14600ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14610ac07820SSatish Balay Mat B; 1462dfbe8321SBarry Smith PetscErrorCode ierr; 1463d0f46423SBarry Smith PetscInt M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1464d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 14653eda8832SBarry Smith MatScalar *a; 14660ac07820SSatish Balay 1467d64ed03dSBarry Smith PetscFunctionBegin; 1468e9695a30SBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1469fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 14707adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr); 1471d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 14727adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 1473d0f46423SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr); 1474fc4dec0aSBarry Smith } else { 1475fc4dec0aSBarry Smith B = *matout; 1476fc4dec0aSBarry Smith } 14770ac07820SSatish Balay 14780ac07820SSatish Balay /* copy over the A part */ 14790ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 14800ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1481b24ad042SBarry Smith ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr); 14820ac07820SSatish Balay 14830ac07820SSatish Balay for (i=0; i<mbs; i++) { 1484899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14850ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 14860ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1487899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 14880ac07820SSatish Balay for (k=0; k<bs; k++) { 148997e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 14900ac07820SSatish Balay col++; a += bs; 14910ac07820SSatish Balay } 14920ac07820SSatish Balay } 14930ac07820SSatish Balay } 14940ac07820SSatish Balay /* copy over the B part */ 14950ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 14960ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14970ac07820SSatish Balay for (i=0; i<mbs; i++) { 1498899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 14990ac07820SSatish Balay for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; } 15000ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 15010ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15020ac07820SSatish Balay for (k=0; k<bs; k++) { 150397e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15040ac07820SSatish Balay col++; a += bs; 15050ac07820SSatish Balay } 15060ac07820SSatish Balay } 15070ac07820SSatish Balay } 1508606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15090ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15100ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15110ac07820SSatish Balay 1512815cbec1SBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout != A) { 15130ac07820SSatish Balay *matout = B; 15140ac07820SSatish Balay } else { 1515273d9f13SBarry Smith ierr = MatHeaderCopy(A,B);CHKERRQ(ierr); 15160ac07820SSatish Balay } 15173a40ed3dSBarry Smith PetscFunctionReturn(0); 15180ac07820SSatish Balay } 15190e95ebc0SSatish Balay 15204a2ae208SSatish Balay #undef __FUNCT__ 15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15230e95ebc0SSatish Balay { 152436c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 152536c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1526dfbe8321SBarry Smith PetscErrorCode ierr; 1527b24ad042SBarry Smith PetscInt s1,s2,s3; 15280e95ebc0SSatish Balay 1529d64ed03dSBarry Smith PetscFunctionBegin; 153036c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 153136c4a09eSSatish Balay if (rr) { 153236c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 153329bbc08cSBarry Smith if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 153436c4a09eSSatish Balay /* Overlap communication with computation. */ 1535ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 153636c4a09eSSatish Balay } 15370e95ebc0SSatish Balay if (ll) { 15380e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 153929bbc08cSBarry Smith if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 1540a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr); 15410e95ebc0SSatish Balay } 154236c4a09eSSatish Balay /* scale the diagonal block */ 154336c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 154436c4a09eSSatish Balay 154536c4a09eSSatish Balay if (rr) { 154636c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1547ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1548a21fb8cbSBarry Smith ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr); 154936c4a09eSSatish Balay } 155036c4a09eSSatish Balay 15513a40ed3dSBarry Smith PetscFunctionReturn(0); 15520e95ebc0SSatish Balay } 15530e95ebc0SSatish Balay 15544a2ae208SSatish Balay #undef __FUNCT__ 15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag) 15570ac07820SSatish Balay { 15580ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 15596849ba73SBarry Smith PetscErrorCode ierr; 1560b24ad042SBarry Smith PetscMPIInt imdex,size = l->size,n,rank = l->rank; 1561d0f46423SBarry Smith PetscInt i,*owners = A->rmap->range; 1562b24ad042SBarry Smith PetscInt *nprocs,j,idx,nsends,row; 1563b24ad042SBarry Smith PetscInt nmax,*svalues,*starts,*owner,nrecvs; 15647adad957SLisandro Dalcin PetscInt *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1; 1565d0f46423SBarry Smith PetscInt *lens,*lrows,*values,rstart_bs=A->rmap->rstart; 15667adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)A)->comm; 15670ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 15680ac07820SSatish Balay MPI_Status recv_status,*send_status; 15696543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15706543fbbaSBarry Smith PetscTruth found = PETSC_FALSE; 15716543fbbaSBarry Smith #endif 15720ac07820SSatish Balay 1573d64ed03dSBarry Smith PetscFunctionBegin; 15740ac07820SSatish Balay /* first count number of contributors to each processor */ 1575b24ad042SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 1576b24ad042SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 1577b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/ 15786543fbbaSBarry Smith j = 0; 15790ac07820SSatish Balay for (i=0; i<N; i++) { 15806543fbbaSBarry Smith if (lastidx > (idx = rows[i])) j = 0; 15816543fbbaSBarry Smith lastidx = idx; 15826543fbbaSBarry Smith for (; j<size; j++) { 1583357c27ecSBarry Smith if (idx >= owners[j] && idx < owners[j+1]) { 15846543fbbaSBarry Smith nprocs[2*j]++; 15856543fbbaSBarry Smith nprocs[2*j+1] = 1; 15866543fbbaSBarry Smith owner[i] = j; 15876543fbbaSBarry Smith #if defined(PETSC_DEBUG) 15886543fbbaSBarry Smith found = PETSC_TRUE; 15896543fbbaSBarry Smith #endif 15906543fbbaSBarry Smith break; 15910ac07820SSatish Balay } 15920ac07820SSatish Balay } 15936543fbbaSBarry Smith #if defined(PETSC_DEBUG) 159429bbc08cSBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range"); 15956543fbbaSBarry Smith found = PETSC_FALSE; 15966543fbbaSBarry Smith #endif 15970ac07820SSatish Balay } 1598c1dc657dSBarry Smith nsends = 0; for (i=0; i<size; i++) { nsends += nprocs[2*i+1];} 15990ac07820SSatish Balay 16000ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 1601c1dc657dSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 16020ac07820SSatish Balay 16030ac07820SSatish Balay /* post receives: */ 1604b24ad042SBarry Smith ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr); 1605b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 16060ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 1607b24ad042SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16080ac07820SSatish Balay } 16090ac07820SSatish Balay 16100ac07820SSatish Balay /* do sends: 16110ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16120ac07820SSatish Balay the ith processor 16130ac07820SSatish Balay */ 1614b24ad042SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr); 1615b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 1616b24ad042SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 16170ac07820SSatish Balay starts[0] = 0; 1618c1dc657dSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16190ac07820SSatish Balay for (i=0; i<N; i++) { 16200ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16210ac07820SSatish Balay } 16220ac07820SSatish Balay 16230ac07820SSatish Balay starts[0] = 0; 1624c1dc657dSBarry Smith for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];} 16250ac07820SSatish Balay count = 0; 16260ac07820SSatish Balay for (i=0; i<size; i++) { 1627c1dc657dSBarry Smith if (nprocs[2*i+1]) { 1628b24ad042SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16290ac07820SSatish Balay } 16300ac07820SSatish Balay } 1631606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16320ac07820SSatish Balay 1633357c27ecSBarry Smith base = owners[rank]; 16340ac07820SSatish Balay 16350ac07820SSatish Balay /* wait on receives */ 1636b24ad042SBarry Smith ierr = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 16370ac07820SSatish Balay source = lens + nrecvs; 16380ac07820SSatish Balay count = nrecvs; slen = 0; 16390ac07820SSatish Balay while (count) { 1640ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16410ac07820SSatish Balay /* unpack receives into our local space */ 1642b24ad042SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr); 16430ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16440ac07820SSatish Balay lens[imdex] = n; 16450ac07820SSatish Balay slen += n; 16460ac07820SSatish Balay count--; 16470ac07820SSatish Balay } 1648606d414cSSatish Balay ierr = PetscFree(recv_waits);CHKERRQ(ierr); 16490ac07820SSatish Balay 16500ac07820SSatish Balay /* move the data into the send scatter */ 1651b24ad042SBarry Smith ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr); 16520ac07820SSatish Balay count = 0; 16530ac07820SSatish Balay for (i=0; i<nrecvs; i++) { 16540ac07820SSatish Balay values = rvalues + i*nmax; 16550ac07820SSatish Balay for (j=0; j<lens[i]; j++) { 16560ac07820SSatish Balay lrows[count++] = values[j] - base; 16570ac07820SSatish Balay } 16580ac07820SSatish Balay } 1659606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1660606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1661606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1662606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16630ac07820SSatish Balay 16640ac07820SSatish Balay /* actually zap the local rows */ 166572dacd9aSBarry Smith /* 166672dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1667a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 166872dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 166972dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 167072dacd9aSBarry Smith 167172dacd9aSBarry Smith */ 16729c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1673f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr); 1674d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1675f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr); 1676f4df32b1SMatthew Knepley } else if (diag != 0.0) { 1677f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1678fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 167929bbc08cSBarry Smith SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1680512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 16816525c446SSatish Balay } 1682a07cd24cSSatish Balay for (i=0; i<slen; i++) { 1683a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1684f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1685a07cd24cSSatish Balay } 1686a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1687a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 16889c957beeSSatish Balay } else { 1689f4df32b1SMatthew Knepley ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr); 1690a07cd24cSSatish Balay } 16919c957beeSSatish Balay 1692606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1693a07cd24cSSatish Balay 16940ac07820SSatish Balay /* wait on sends */ 16950ac07820SSatish Balay if (nsends) { 169682502324SSatish Balay ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 1697ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1698606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 16990ac07820SSatish Balay } 1700606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1701606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17020ac07820SSatish Balay 17033a40ed3dSBarry Smith PetscFunctionReturn(0); 17040ac07820SSatish Balay } 170572dacd9aSBarry Smith 17064a2ae208SSatish Balay #undef __FUNCT__ 17074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 1708dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 1709bb5a7306SBarry Smith { 1710bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1711dfbe8321SBarry Smith PetscErrorCode ierr; 1712d64ed03dSBarry Smith 1713d64ed03dSBarry Smith PetscFunctionBegin; 1714bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17153a40ed3dSBarry Smith PetscFunctionReturn(0); 1716bb5a7306SBarry Smith } 1717bb5a7306SBarry Smith 17186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17190ac07820SSatish Balay 17204a2ae208SSatish Balay #undef __FUNCT__ 17214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 1722dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag) 17237fc3c18eSBarry Smith { 17247fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 17257fc3c18eSBarry Smith Mat a,b,c,d; 17267fc3c18eSBarry Smith PetscTruth flg; 1727dfbe8321SBarry Smith PetscErrorCode ierr; 17287fc3c18eSBarry Smith 17297fc3c18eSBarry Smith PetscFunctionBegin; 17307fc3c18eSBarry Smith a = matA->A; b = matA->B; 17317fc3c18eSBarry Smith c = matB->A; d = matB->B; 17327fc3c18eSBarry Smith 17337fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 1734abc0a331SBarry Smith if (flg) { 17357fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 17367fc3c18eSBarry Smith } 17377adad957SLisandro Dalcin ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr); 17387fc3c18eSBarry Smith PetscFunctionReturn(0); 17397fc3c18eSBarry Smith } 17407fc3c18eSBarry Smith 17413c896bc6SHong Zhang #undef __FUNCT__ 17423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 17433c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 17443c896bc6SHong Zhang { 17453c896bc6SHong Zhang PetscErrorCode ierr; 17463c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17473c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17483c896bc6SHong Zhang 17493c896bc6SHong Zhang PetscFunctionBegin; 17503c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17513c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17523c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 17533c896bc6SHong Zhang } else { 17543c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 17553c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 17563c896bc6SHong Zhang } 17573c896bc6SHong Zhang PetscFunctionReturn(0); 17583c896bc6SHong Zhang } 1759273d9f13SBarry Smith 17604a2ae208SSatish Balay #undef __FUNCT__ 17614a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ" 1762dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A) 1763273d9f13SBarry Smith { 1764dfbe8321SBarry Smith PetscErrorCode ierr; 1765273d9f13SBarry Smith 1766273d9f13SBarry Smith PetscFunctionBegin; 1767db4efbfdSBarry Smith ierr = MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 1768273d9f13SBarry Smith PetscFunctionReturn(0); 1769273d9f13SBarry Smith } 1770273d9f13SBarry Smith 17714fe895cdSHong Zhang #include "petscblaslapack.h" 17724fe895cdSHong Zhang #undef __FUNCT__ 17734fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 17744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 17754fe895cdSHong Zhang { 17764fe895cdSHong Zhang PetscErrorCode ierr; 17774fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data; 17784fe895cdSHong Zhang PetscBLASInt bnz,one=1; 17794fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 17804fe895cdSHong Zhang 17814fe895cdSHong Zhang PetscFunctionBegin; 17824fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17834fe895cdSHong Zhang PetscScalar alpha = a; 17844fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17854fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17860805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17874fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17884fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17894fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17900805154bSBarry Smith bnz = PetscBLASIntCast(x->nz); 17914fe895cdSHong Zhang BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one); 17924fe895cdSHong Zhang } else { 17934fe895cdSHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 17944fe895cdSHong Zhang } 17954fe895cdSHong Zhang PetscFunctionReturn(0); 17964fe895cdSHong Zhang } 17974fe895cdSHong Zhang 179899cafbc1SBarry Smith #undef __FUNCT__ 1799*41c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ" 1800*41c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs) 1801*41c166b1SJed Brown { 1802*41c166b1SJed Brown Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1803*41c166b1SJed Brown PetscErrorCode ierr; 1804*41c166b1SJed Brown 1805*41c166b1SJed Brown PetscFunctionBegin; 1806*41c166b1SJed Brown ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr); 1807*41c166b1SJed Brown ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr); 1808*41c166b1SJed Brown PetscFunctionReturn(0); 1809*41c166b1SJed Brown } 1810*41c166b1SJed Brown 1811*41c166b1SJed Brown #undef __FUNCT__ 181299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 181399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 181499cafbc1SBarry Smith { 181599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 181699cafbc1SBarry Smith PetscErrorCode ierr; 181799cafbc1SBarry Smith 181899cafbc1SBarry Smith PetscFunctionBegin; 181999cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 182099cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 182199cafbc1SBarry Smith PetscFunctionReturn(0); 182299cafbc1SBarry Smith } 182399cafbc1SBarry Smith 182499cafbc1SBarry Smith #undef __FUNCT__ 182599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 182699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 182799cafbc1SBarry Smith { 182899cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 182999cafbc1SBarry Smith PetscErrorCode ierr; 183099cafbc1SBarry Smith 183199cafbc1SBarry Smith PetscFunctionBegin; 183299cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 183399cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 183499cafbc1SBarry Smith PetscFunctionReturn(0); 183599cafbc1SBarry Smith } 183699cafbc1SBarry Smith 183782094794SBarry Smith #undef __FUNCT__ 183882094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 18394aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 18404aa3045dSJed Brown { 18414aa3045dSJed Brown PetscErrorCode ierr; 18424aa3045dSJed Brown IS iscol_local; 18434aa3045dSJed Brown PetscInt csize; 18444aa3045dSJed Brown 18454aa3045dSJed Brown PetscFunctionBegin; 18464aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 1847b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 1848b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 1849b79d0421SJed Brown if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 1850b79d0421SJed Brown } else { 18514aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 1852b79d0421SJed Brown } 18534aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 1854b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 1855b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 18564aa3045dSJed Brown ierr = ISDestroy(iscol_local);CHKERRQ(ierr); 1857b79d0421SJed Brown } 18584aa3045dSJed Brown PetscFunctionReturn(0); 18594aa3045dSJed Brown } 18604aa3045dSJed Brown 18614aa3045dSJed Brown #undef __FUNCT__ 18624aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 186382094794SBarry Smith /* 186482094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 186582094794SBarry Smith in local and then by concatenating the local matrices the end result. 186682094794SBarry Smith Writing it directly would be much like MatGetSubMatrices_MPIBAIJ() 186782094794SBarry Smith */ 18684aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 186982094794SBarry Smith { 187082094794SBarry Smith PetscErrorCode ierr; 187182094794SBarry Smith PetscMPIInt rank,size; 187282094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 187382094794SBarry Smith PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal; 187482094794SBarry Smith Mat *local,M,Mreuse; 187582094794SBarry Smith MatScalar *vwork,*aa; 187682094794SBarry Smith MPI_Comm comm = ((PetscObject)mat)->comm; 187782094794SBarry Smith Mat_SeqBAIJ *aij; 187882094794SBarry Smith 187982094794SBarry Smith 188082094794SBarry Smith PetscFunctionBegin; 188182094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 188282094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 188382094794SBarry Smith 188482094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 188582094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr); 188682094794SBarry Smith if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 188782094794SBarry Smith local = &Mreuse; 188882094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr); 188982094794SBarry Smith } else { 189082094794SBarry Smith ierr = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr); 189182094794SBarry Smith Mreuse = *local; 189282094794SBarry Smith ierr = PetscFree(local);CHKERRQ(ierr); 189382094794SBarry Smith } 189482094794SBarry Smith 189582094794SBarry Smith /* 189682094794SBarry Smith m - number of local rows 189782094794SBarry Smith n - number of columns (same on all processors) 189882094794SBarry Smith rstart - first row in new global matrix generated 189982094794SBarry Smith */ 190082094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 190182094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 190282094794SBarry Smith m = m/bs; 190382094794SBarry Smith n = n/bs; 190482094794SBarry Smith 190582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 190682094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 190782094794SBarry Smith ii = aij->i; 190882094794SBarry Smith jj = aij->j; 190982094794SBarry Smith 191082094794SBarry Smith /* 191182094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 191282094794SBarry Smith portions of the matrix in order to do correct preallocation 191382094794SBarry Smith */ 191482094794SBarry Smith 191582094794SBarry Smith /* first get start and end of "diagonal" columns */ 191682094794SBarry Smith if (csize == PETSC_DECIDE) { 191782094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 191882094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 191982094794SBarry Smith nlocal = m; 192082094794SBarry Smith } else { 192182094794SBarry Smith nlocal = n/size + ((n % size) > rank); 192282094794SBarry Smith } 192382094794SBarry Smith } else { 192482094794SBarry Smith nlocal = csize/bs; 192582094794SBarry Smith } 192682094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 192782094794SBarry Smith rstart = rend - nlocal; 192882094794SBarry Smith if (rank == size - 1 && rend != n) { 192982094794SBarry Smith SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 193082094794SBarry Smith } 193182094794SBarry Smith 193282094794SBarry Smith /* next, compute all the lengths */ 193382094794SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr); 193482094794SBarry Smith olens = dlens + m; 193582094794SBarry Smith for (i=0; i<m; i++) { 193682094794SBarry Smith jend = ii[i+1] - ii[i]; 193782094794SBarry Smith olen = 0; 193882094794SBarry Smith dlen = 0; 193982094794SBarry Smith for (j=0; j<jend; j++) { 194082094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 194182094794SBarry Smith else dlen++; 194282094794SBarry Smith jj++; 194382094794SBarry Smith } 194482094794SBarry Smith olens[i] = olen; 194582094794SBarry Smith dlens[i] = dlen; 194682094794SBarry Smith } 194782094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 194882094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 194982094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 195082094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 195182094794SBarry Smith ierr = PetscFree(dlens);CHKERRQ(ierr); 195282094794SBarry Smith } else { 195382094794SBarry Smith PetscInt ml,nl; 195482094794SBarry Smith 195582094794SBarry Smith M = *newmat; 195682094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 195782094794SBarry Smith if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 195882094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 195982094794SBarry Smith /* 196082094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 196182094794SBarry Smith rather than the slower MatSetValues(). 196282094794SBarry Smith */ 196382094794SBarry Smith M->was_assembled = PETSC_TRUE; 196482094794SBarry Smith M->assembled = PETSC_FALSE; 196582094794SBarry Smith } 196682094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 196782094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 196882094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 196982094794SBarry Smith ii = aij->i; 197082094794SBarry Smith jj = aij->j; 197182094794SBarry Smith aa = aij->a; 197282094794SBarry Smith for (i=0; i<m; i++) { 197382094794SBarry Smith row = rstart/bs + i; 197482094794SBarry Smith nz = ii[i+1] - ii[i]; 197582094794SBarry Smith cwork = jj; jj += nz; 197682094794SBarry Smith vwork = aa; aa += nz; 197782094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 197882094794SBarry Smith } 197982094794SBarry Smith 198082094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 198182094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 198282094794SBarry Smith *newmat = M; 198382094794SBarry Smith 198482094794SBarry Smith /* save submatrix used in processor for next request */ 198582094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 198682094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 198782094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 198882094794SBarry Smith } 198982094794SBarry Smith 199082094794SBarry Smith PetscFunctionReturn(0); 199182094794SBarry Smith } 199282094794SBarry Smith 199382094794SBarry Smith #undef __FUNCT__ 199482094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 199582094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 199682094794SBarry Smith { 199782094794SBarry Smith MPI_Comm comm,pcomm; 199882094794SBarry Smith PetscInt first,local_size,nrows; 199982094794SBarry Smith const PetscInt *rows; 2000dbf0e21dSBarry Smith PetscMPIInt size; 200182094794SBarry Smith IS crowp,growp,irowp,lrowp,lcolp,icolp; 200282094794SBarry Smith PetscErrorCode ierr; 200382094794SBarry Smith 200482094794SBarry Smith PetscFunctionBegin; 200582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 200682094794SBarry Smith /* make a collective version of 'rowp' */ 200782094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 200882094794SBarry Smith if (pcomm==comm) { 200982094794SBarry Smith crowp = rowp; 201082094794SBarry Smith } else { 201182094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 201282094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 201382094794SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr); 201482094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 201582094794SBarry Smith } 201682094794SBarry Smith /* collect the global row permutation and invert it */ 201782094794SBarry Smith ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr); 201882094794SBarry Smith ierr = ISSetPermutation(growp);CHKERRQ(ierr); 201982094794SBarry Smith if (pcomm!=comm) { 202082094794SBarry Smith ierr = ISDestroy(crowp);CHKERRQ(ierr); 202182094794SBarry Smith } 202282094794SBarry Smith ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr); 202382094794SBarry Smith /* get the local target indices */ 202482094794SBarry Smith ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr); 202582094794SBarry Smith ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr); 202682094794SBarry Smith ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr); 202782094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr); 202882094794SBarry Smith ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr); 202982094794SBarry Smith ierr = ISDestroy(irowp);CHKERRQ(ierr); 203082094794SBarry Smith /* the column permutation is so much easier; 203182094794SBarry Smith make a local version of 'colp' and invert it */ 203282094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2033dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2034dbf0e21dSBarry Smith if (size==1) { 203582094794SBarry Smith lcolp = colp; 203682094794SBarry Smith } else { 203782094794SBarry Smith ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr); 203882094794SBarry Smith ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr); 203982094794SBarry Smith ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr); 204082094794SBarry Smith } 2041dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 204282094794SBarry Smith ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr); 20434aa3045dSJed Brown ierr = ISSetPermutation(icolp);CHKERRQ(ierr); 2044dbf0e21dSBarry Smith if (size>1) { 204582094794SBarry Smith ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr); 204682094794SBarry Smith ierr = ISDestroy(lcolp);CHKERRQ(ierr); 204782094794SBarry Smith } 204882094794SBarry Smith /* now we just get the submatrix */ 20494aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 205082094794SBarry Smith /* clean up */ 205182094794SBarry Smith ierr = ISDestroy(lrowp);CHKERRQ(ierr); 205282094794SBarry Smith ierr = ISDestroy(icolp);CHKERRQ(ierr); 205382094794SBarry Smith PetscFunctionReturn(0); 205482094794SBarry Smith } 205582094794SBarry Smith 20568c7482ecSBarry Smith #undef __FUNCT__ 20578c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 20588c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 20598c7482ecSBarry Smith { 20608c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 20618c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 20628c7482ecSBarry Smith 20638c7482ecSBarry Smith PetscFunctionBegin; 20648c7482ecSBarry Smith if (nghosts) { *nghosts = B->nbs;} 20658c7482ecSBarry Smith if (ghosts) {*ghosts = baij->garray;} 20668c7482ecSBarry Smith PetscFunctionReturn(0); 20678c7482ecSBarry Smith } 20688c7482ecSBarry Smith 2069f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat); 2070f6d58c54SBarry Smith 2071f6d58c54SBarry Smith #undef __FUNCT__ 2072f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ" 2073f6d58c54SBarry Smith /* 2074f6d58c54SBarry Smith This routine is almost identical to MatFDColoringCreate_MPIBAIJ()! 2075f6d58c54SBarry Smith */ 2076f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c) 2077f6d58c54SBarry Smith { 2078f6d58c54SBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 2079f6d58c54SBarry Smith PetscErrorCode ierr; 2080f6d58c54SBarry Smith PetscMPIInt size,*ncolsonproc,*disp,nn; 2081f6d58c54SBarry Smith PetscInt bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col; 2082f6d58c54SBarry Smith const PetscInt *is; 2083f6d58c54SBarry Smith PetscInt nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj; 2084f6d58c54SBarry Smith PetscInt *rowhit,M,cstart,cend,colb; 2085f6d58c54SBarry Smith PetscInt *columnsforrow,l; 2086f6d58c54SBarry Smith IS *isa; 2087f6d58c54SBarry Smith PetscTruth done,flg; 2088f6d58c54SBarry Smith ISLocalToGlobalMapping map = mat->bmapping; 2089f6d58c54SBarry Smith PetscInt *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype; 2090f6d58c54SBarry Smith 2091f6d58c54SBarry Smith PetscFunctionBegin; 2092f6d58c54SBarry Smith if (!mat->assembled) { 2093f6d58c54SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();"); 2094f6d58c54SBarry Smith } 2095f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock"); 2096f6d58c54SBarry Smith 2097f6d58c54SBarry Smith ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr); 2098f6d58c54SBarry Smith 2099f6d58c54SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 2100f6d58c54SBarry Smith M = mat->rmap->n/bs; 2101f6d58c54SBarry Smith cstart = mat->cmap->rstart/bs; 2102f6d58c54SBarry Smith cend = mat->cmap->rend/bs; 2103f6d58c54SBarry Smith c->M = mat->rmap->N/bs; /* set the global rows and columns and local rows */ 2104f6d58c54SBarry Smith c->N = mat->cmap->N/bs; 2105f6d58c54SBarry Smith c->m = mat->rmap->n/bs; 2106f6d58c54SBarry Smith c->rstart = mat->rmap->rstart/bs; 2107f6d58c54SBarry Smith 2108f6d58c54SBarry Smith c->ncolors = nis; 2109f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr); 2110f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr); 2111f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr); 2112f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr); 2113f6d58c54SBarry Smith ierr = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr); 2114f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr); 2115f6d58c54SBarry Smith 2116f6d58c54SBarry Smith /* Allow access to data structures of local part of matrix */ 2117f6d58c54SBarry Smith if (!baij->colmap) { 2118f6d58c54SBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 2119f6d58c54SBarry Smith } 2120f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2121f6d58c54SBarry Smith ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2122f6d58c54SBarry Smith 2123f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr); 2124f6d58c54SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr); 2125f6d58c54SBarry Smith 2126f6d58c54SBarry Smith for (i=0; i<nis; i++) { 2127f6d58c54SBarry Smith ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr); 2128f6d58c54SBarry Smith ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr); 2129f6d58c54SBarry Smith c->ncolumns[i] = n; 2130f6d58c54SBarry Smith if (n) { 2131f6d58c54SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr); 2132f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr); 2133f6d58c54SBarry Smith ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr); 2134f6d58c54SBarry Smith } else { 2135f6d58c54SBarry Smith c->columns[i] = 0; 2136f6d58c54SBarry Smith } 2137f6d58c54SBarry Smith 2138f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL){ 2139f6d58c54SBarry Smith /* Determine the total (parallel) number of columns of this color */ 2140f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr); 2141f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt*),&ncolsonproc);CHKERRQ(ierr); 2142f6d58c54SBarry Smith disp = ncolsonproc + size; 2143f6d58c54SBarry Smith 2144f6d58c54SBarry Smith nn = PetscMPIIntCast(n); 2145f6d58c54SBarry Smith ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2146f6d58c54SBarry Smith nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];} 2147f6d58c54SBarry Smith if (!nctot) { 2148f6d58c54SBarry Smith ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr); 2149f6d58c54SBarry Smith } 2150f6d58c54SBarry Smith 2151f6d58c54SBarry Smith disp[0] = 0; 2152f6d58c54SBarry Smith for (j=1; j<size; j++) { 2153f6d58c54SBarry Smith disp[j] = disp[j-1] + ncolsonproc[j-1]; 2154f6d58c54SBarry Smith } 2155f6d58c54SBarry Smith 2156f6d58c54SBarry Smith /* Get complete list of columns for color on each processor */ 2157f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2158f6d58c54SBarry Smith ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr); 2159f6d58c54SBarry Smith ierr = PetscFree(ncolsonproc);CHKERRQ(ierr); 2160f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED){ 2161f6d58c54SBarry Smith /* Determine local number of columns of this color on this process, including ghost points */ 2162f6d58c54SBarry Smith nctot = n; 2163f6d58c54SBarry Smith ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr); 2164f6d58c54SBarry Smith ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr); 2165f6d58c54SBarry Smith } else { 2166f6d58c54SBarry Smith SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type"); 2167f6d58c54SBarry Smith } 2168f6d58c54SBarry Smith 2169f6d58c54SBarry Smith /* 2170f6d58c54SBarry Smith Mark all rows affect by these columns 2171f6d58c54SBarry Smith */ 2172f6d58c54SBarry Smith /* Temporary option to allow for debugging/testing */ 2173f6d58c54SBarry Smith flg = PETSC_FALSE; 2174f6d58c54SBarry Smith ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr); 2175f6d58c54SBarry Smith if (!flg) {/*-----------------------------------------------------------------------------*/ 2176f6d58c54SBarry Smith /* crude, fast version */ 2177f6d58c54SBarry Smith ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr); 2178f6d58c54SBarry Smith /* loop over columns*/ 2179f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2180f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2181f6d58c54SBarry Smith col = ltog[cols[j]]; 2182f6d58c54SBarry Smith } else { 2183f6d58c54SBarry Smith col = cols[j]; 2184f6d58c54SBarry Smith } 2185f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2186f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2187f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2188f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2189f6d58c54SBarry Smith } else { 2190f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2191f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr) 2192f6d58c54SBarry Smith colb --; 2193f6d58c54SBarry Smith #else 2194f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2195f6d58c54SBarry Smith #endif 2196f6d58c54SBarry Smith if (colb == -1) { 2197f6d58c54SBarry Smith m = 0; 2198f6d58c54SBarry Smith } else { 2199f6d58c54SBarry Smith colb = colb/bs; 2200f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2201f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2202f6d58c54SBarry Smith } 2203f6d58c54SBarry Smith } 2204f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2205f6d58c54SBarry Smith for (k=0; k<m; k++) { 2206f6d58c54SBarry Smith rowhit[*rows++] = col + 1; 2207f6d58c54SBarry Smith } 2208f6d58c54SBarry Smith } 2209f6d58c54SBarry Smith 2210f6d58c54SBarry Smith /* count the number of hits */ 2211f6d58c54SBarry Smith nrows = 0; 2212f6d58c54SBarry Smith for (j=0; j<M; j++) { 2213f6d58c54SBarry Smith if (rowhit[j]) nrows++; 2214f6d58c54SBarry Smith } 2215f6d58c54SBarry Smith c->nrows[i] = nrows; 2216f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2217f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2218f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2219f6d58c54SBarry Smith nrows = 0; 2220f6d58c54SBarry Smith for (j=0; j<M; j++) { 2221f6d58c54SBarry Smith if (rowhit[j]) { 2222f6d58c54SBarry Smith c->rows[i][nrows] = j; 2223f6d58c54SBarry Smith c->columnsforrow[i][nrows] = rowhit[j] - 1; 2224f6d58c54SBarry Smith nrows++; 2225f6d58c54SBarry Smith } 2226f6d58c54SBarry Smith } 2227f6d58c54SBarry Smith } else {/*-------------------------------------------------------------------------------*/ 2228f6d58c54SBarry Smith /* slow version, using rowhit as a linked list */ 2229f6d58c54SBarry Smith PetscInt currentcol,fm,mfm; 2230f6d58c54SBarry Smith rowhit[M] = M; 2231f6d58c54SBarry Smith nrows = 0; 2232f6d58c54SBarry Smith /* loop over columns*/ 2233f6d58c54SBarry Smith for (j=0; j<nctot; j++) { 2234f6d58c54SBarry Smith if (ctype == IS_COLORING_GHOSTED) { 2235f6d58c54SBarry Smith col = ltog[cols[j]]; 2236f6d58c54SBarry Smith } else { 2237f6d58c54SBarry Smith col = cols[j]; 2238f6d58c54SBarry Smith } 2239f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2240f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2241f6d58c54SBarry Smith rows = A_cj + A_ci[col-cstart]; 2242f6d58c54SBarry Smith m = A_ci[col-cstart+1] - A_ci[col-cstart]; 2243f6d58c54SBarry Smith } else { 2244f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2245f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2246f6d58c54SBarry Smith colb --; 2247f6d58c54SBarry Smith #else 2248f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2249f6d58c54SBarry Smith #endif 2250f6d58c54SBarry Smith if (colb == -1) { 2251f6d58c54SBarry Smith m = 0; 2252f6d58c54SBarry Smith } else { 2253f6d58c54SBarry Smith colb = colb/bs; 2254f6d58c54SBarry Smith rows = B_cj + B_ci[colb]; 2255f6d58c54SBarry Smith m = B_ci[colb+1] - B_ci[colb]; 2256f6d58c54SBarry Smith } 2257f6d58c54SBarry Smith } 2258f6d58c54SBarry Smith 2259f6d58c54SBarry Smith /* loop over columns marking them in rowhit */ 2260f6d58c54SBarry Smith fm = M; /* fm points to first entry in linked list */ 2261f6d58c54SBarry Smith for (k=0; k<m; k++) { 2262f6d58c54SBarry Smith currentcol = *rows++; 2263f6d58c54SBarry Smith /* is it already in the list? */ 2264f6d58c54SBarry Smith do { 2265f6d58c54SBarry Smith mfm = fm; 2266f6d58c54SBarry Smith fm = rowhit[fm]; 2267f6d58c54SBarry Smith } while (fm < currentcol); 2268f6d58c54SBarry Smith /* not in list so add it */ 2269f6d58c54SBarry Smith if (fm != currentcol) { 2270f6d58c54SBarry Smith nrows++; 2271f6d58c54SBarry Smith columnsforrow[currentcol] = col; 2272f6d58c54SBarry Smith /* next three lines insert new entry into linked list */ 2273f6d58c54SBarry Smith rowhit[mfm] = currentcol; 2274f6d58c54SBarry Smith rowhit[currentcol] = fm; 2275f6d58c54SBarry Smith fm = currentcol; 2276f6d58c54SBarry Smith /* fm points to present position in list since we know the columns are sorted */ 2277f6d58c54SBarry Smith } else { 2278f6d58c54SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected"); 2279f6d58c54SBarry Smith } 2280f6d58c54SBarry Smith } 2281f6d58c54SBarry Smith } 2282f6d58c54SBarry Smith c->nrows[i] = nrows; 2283f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr); 2284f6d58c54SBarry Smith ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr); 2285f6d58c54SBarry Smith ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr); 2286f6d58c54SBarry Smith /* now store the linked list of rows into c->rows[i] */ 2287f6d58c54SBarry Smith nrows = 0; 2288f6d58c54SBarry Smith fm = rowhit[M]; 2289f6d58c54SBarry Smith do { 2290f6d58c54SBarry Smith c->rows[i][nrows] = fm; 2291f6d58c54SBarry Smith c->columnsforrow[i][nrows++] = columnsforrow[fm]; 2292f6d58c54SBarry Smith fm = rowhit[fm]; 2293f6d58c54SBarry Smith } while (fm < M); 2294f6d58c54SBarry Smith } /* ---------------------------------------------------------------------------------------*/ 2295f6d58c54SBarry Smith ierr = PetscFree(cols);CHKERRQ(ierr); 2296f6d58c54SBarry Smith } 2297f6d58c54SBarry Smith 2298f6d58c54SBarry Smith /* Optimize by adding the vscale, and scaleforrow[][] fields */ 2299f6d58c54SBarry Smith /* 2300f6d58c54SBarry Smith vscale will contain the "diagonal" on processor scalings followed by the off processor 2301f6d58c54SBarry Smith */ 2302f6d58c54SBarry Smith if (ctype == IS_COLORING_GLOBAL) { 2303f6d58c54SBarry Smith PetscInt *garray; 2304f6d58c54SBarry Smith ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr); 2305f6d58c54SBarry Smith for (i=0; i<baij->B->cmap->n/bs; i++) { 2306f6d58c54SBarry Smith for (j=0; j<bs; j++) { 2307f6d58c54SBarry Smith garray[i*bs+j] = bs*baij->garray[i]+j; 2308f6d58c54SBarry Smith } 2309f6d58c54SBarry Smith } 2310f6d58c54SBarry Smith ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr); 2311f6d58c54SBarry Smith ierr = PetscFree(garray);CHKERRQ(ierr); 2312f6d58c54SBarry Smith CHKMEMQ; 2313f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2314f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2315f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2316f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2317f6d58c54SBarry Smith col = c->columnsforrow[k][l]; 2318f6d58c54SBarry Smith if (col >= cstart && col < cend) { 2319f6d58c54SBarry Smith /* column is in diagonal block of matrix */ 2320f6d58c54SBarry Smith colb = col - cstart; 2321f6d58c54SBarry Smith } else { 2322f6d58c54SBarry Smith /* column is in "off-processor" part */ 2323f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE) 2324f6d58c54SBarry Smith ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr); 2325f6d58c54SBarry Smith colb --; 2326f6d58c54SBarry Smith #else 2327f6d58c54SBarry Smith colb = baij->colmap[col] - 1; 2328f6d58c54SBarry Smith #endif 2329f6d58c54SBarry Smith colb = colb/bs; 2330f6d58c54SBarry Smith colb += cend - cstart; 2331f6d58c54SBarry Smith } 2332f6d58c54SBarry Smith c->vscaleforrow[k][l] = colb; 2333f6d58c54SBarry Smith } 2334f6d58c54SBarry Smith } 2335f6d58c54SBarry Smith } else if (ctype == IS_COLORING_GHOSTED) { 2336f6d58c54SBarry Smith /* Get gtol mapping */ 2337f6d58c54SBarry Smith PetscInt N = mat->cmap->N, *gtol; 2338f6d58c54SBarry Smith ierr = PetscMalloc((N+1)*sizeof(PetscInt),>ol);CHKERRQ(ierr); 2339f6d58c54SBarry Smith for (i=0; i<N; i++) gtol[i] = -1; 2340f6d58c54SBarry Smith for (i=0; i<map->n; i++) gtol[ltog[i]] = i; 2341f6d58c54SBarry Smith 2342f6d58c54SBarry Smith c->vscale = 0; /* will be created in MatFDColoringApply() */ 2343f6d58c54SBarry Smith ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr); 2344f6d58c54SBarry Smith for (k=0; k<c->ncolors; k++) { 2345f6d58c54SBarry Smith ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr); 2346f6d58c54SBarry Smith for (l=0; l<c->nrows[k]; l++) { 2347f6d58c54SBarry Smith col = c->columnsforrow[k][l]; /* global column index */ 2348f6d58c54SBarry Smith c->vscaleforrow[k][l] = gtol[col]; /* local column index */ 2349f6d58c54SBarry Smith } 2350f6d58c54SBarry Smith } 2351f6d58c54SBarry Smith ierr = PetscFree(gtol);CHKERRQ(ierr); 2352f6d58c54SBarry Smith } 2353f6d58c54SBarry Smith ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr); 2354f6d58c54SBarry Smith 2355f6d58c54SBarry Smith ierr = PetscFree(rowhit);CHKERRQ(ierr); 2356f6d58c54SBarry Smith ierr = PetscFree(columnsforrow);CHKERRQ(ierr); 2357f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr); 2358f6d58c54SBarry Smith ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr); 2359f6d58c54SBarry Smith CHKMEMQ; 2360f6d58c54SBarry Smith PetscFunctionReturn(0); 2361f6d58c54SBarry Smith } 2362f6d58c54SBarry Smith 2363f6d58c54SBarry Smith #undef __FUNCT__ 2364f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ" 2365f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat) 2366f6d58c54SBarry Smith { 2367f6d58c54SBarry Smith Mat B; 2368f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2369f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2370f6d58c54SBarry Smith Mat_SeqAIJ *b; 2371f6d58c54SBarry Smith PetscErrorCode ierr; 2372f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2373f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2374f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2375f6d58c54SBarry Smith 2376f6d58c54SBarry Smith PetscFunctionBegin; 2377f6d58c54SBarry Smith ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 2378f6d58c54SBarry Smith ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr); 2379f6d58c54SBarry Smith 2380f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2381f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2382f6d58c54SBarry Smith */ 2383f6d58c54SBarry Smith ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr); 2384f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2385f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2386f6d58c54SBarry Smith } 2387f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2388f6d58c54SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr); 2389f6d58c54SBarry Smith displs = recvcounts + size; 2390f6d58c54SBarry Smith for (i=0; i<size; i++) { 2391f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2392f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2393f6d58c54SBarry Smith } 2394f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2395f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2396f6d58c54SBarry Smith #else 2397f6d58c54SBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2398f6d58c54SBarry Smith #endif 2399f6d58c54SBarry Smith /* --------------------------------------------------------------- 2400f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2401f6d58c54SBarry Smith */ 2402f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2403f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2404f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2405f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2406f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2407f6d58c54SBarry Smith 2408f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2409f6d58c54SBarry Smith Copy my part of matrix column indices over 2410f6d58c54SBarry Smith */ 2411f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2412f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2413f6d58c54SBarry Smith a_jsendbuf = ad->j; 2414f6d58c54SBarry Smith b_jsendbuf = bd->j; 2415f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2416f6d58c54SBarry Smith cnt = 0; 2417f6d58c54SBarry Smith for (i=0; i<n; i++) { 2418f6d58c54SBarry Smith 2419f6d58c54SBarry Smith /* put in lower diagonal portion */ 2420f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2421f6d58c54SBarry Smith while (m > 0) { 2422f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2423f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2424f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2425f6d58c54SBarry Smith m--; 2426f6d58c54SBarry Smith } 2427f6d58c54SBarry Smith 2428f6d58c54SBarry Smith /* put in diagonal portion */ 2429f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2430f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2431f6d58c54SBarry Smith } 2432f6d58c54SBarry Smith 2433f6d58c54SBarry Smith /* put in upper diagonal portion */ 2434f6d58c54SBarry Smith while (m-- > 0) { 2435f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2436f6d58c54SBarry Smith } 2437f6d58c54SBarry Smith } 2438f6d58c54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2439f6d58c54SBarry Smith 2440f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2441f6d58c54SBarry Smith Gather all column indices to all processors 2442f6d58c54SBarry Smith */ 2443f6d58c54SBarry Smith for (i=0; i<size; i++) { 2444f6d58c54SBarry Smith recvcounts[i] = 0; 2445f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2446f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2447f6d58c54SBarry Smith } 2448f6d58c54SBarry Smith } 2449f6d58c54SBarry Smith displs[0] = 0; 2450f6d58c54SBarry Smith for (i=1; i<size; i++) { 2451f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2452f6d58c54SBarry Smith } 2453f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2454f6d58c54SBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2455f6d58c54SBarry Smith #else 2456f6d58c54SBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr); 2457f6d58c54SBarry Smith #endif 2458f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2459f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2460f6d58c54SBarry Smith */ 2461f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2462f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2463f6d58c54SBarry Smith /* set the b->i indices */ 2464f6d58c54SBarry Smith b->i[0] = 0; 2465f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2466f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2467f6d58c54SBarry Smith } 2468f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2469f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2470f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2471f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2472f6d58c54SBarry Smith 2473f6d58c54SBarry Smith if (A->symmetric){ 2474f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2475f6d58c54SBarry Smith } else if (A->hermitian) { 2476f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2477f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2478f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2479f6d58c54SBarry Smith } 2480f6d58c54SBarry Smith *newmat = B; 2481f6d58c54SBarry Smith PetscFunctionReturn(0); 2482f6d58c54SBarry Smith } 2483f6d58c54SBarry Smith 2484b1a666ecSBarry Smith #undef __FUNCT__ 2485b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2486b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2487b1a666ecSBarry Smith { 2488b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2489b1a666ecSBarry Smith PetscErrorCode ierr; 2490b1a666ecSBarry Smith Vec bb1 = 0; 2491b1a666ecSBarry Smith 2492b1a666ecSBarry Smith PetscFunctionBegin; 2493b1a666ecSBarry Smith if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 2494b1a666ecSBarry Smith ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 2495b1a666ecSBarry Smith } 2496b1a666ecSBarry Smith 2497b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2498b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2499b1a666ecSBarry Smith PetscFunctionReturn(0); 2500b1a666ecSBarry Smith } 2501b1a666ecSBarry Smith 2502b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){ 2503b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2504b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2505b1a666ecSBarry Smith its--; 2506b1a666ecSBarry Smith } 2507b1a666ecSBarry Smith 2508b1a666ecSBarry Smith while (its--) { 2509b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2510b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2511b1a666ecSBarry Smith 2512b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2513b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2514b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2515b1a666ecSBarry Smith 2516b1a666ecSBarry Smith /* local sweep */ 2517b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2518b1a666ecSBarry Smith } 2519b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP){ 2520b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2521b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2522b1a666ecSBarry Smith its--; 2523b1a666ecSBarry Smith } 2524b1a666ecSBarry Smith while (its--) { 2525b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2526b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2527b1a666ecSBarry Smith 2528b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2529b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2530b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2531b1a666ecSBarry Smith 2532b1a666ecSBarry Smith /* local sweep */ 2533b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2534b1a666ecSBarry Smith } 2535b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){ 2536b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2537b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2538b1a666ecSBarry Smith its--; 2539b1a666ecSBarry Smith } 2540b1a666ecSBarry Smith while (its--) { 2541b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2542b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2543b1a666ecSBarry Smith 2544b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2545b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2546b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2547b1a666ecSBarry Smith 2548b1a666ecSBarry Smith /* local sweep */ 2549b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2550b1a666ecSBarry Smith } 2551b1a666ecSBarry Smith } else { 2552b1a666ecSBarry Smith SETERRQ(PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2553b1a666ecSBarry Smith } 2554b1a666ecSBarry Smith 2555b1a666ecSBarry Smith if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);} 2556b1a666ecSBarry Smith PetscFunctionReturn(0); 2557b1a666ecSBarry Smith } 2558b1a666ecSBarry Smith 2559f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*); 2560f6d58c54SBarry Smith 25618c7482ecSBarry Smith 256279bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 2563cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 2564cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 2565cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2566cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2567cc2dc46cSBarry Smith MatMult_MPIBAIJ, 256897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 25697c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 25707c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2571cc2dc46cSBarry Smith 0, 2572cc2dc46cSBarry Smith 0, 2573cc2dc46cSBarry Smith 0, 257497304618SKris Buschelman /*10*/ 0, 2575cc2dc46cSBarry Smith 0, 2576cc2dc46cSBarry Smith 0, 2577b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2578cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 257997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 25807fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2581cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2582cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2583cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 258497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2585cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2586cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2587cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2588d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2589cc2dc46cSBarry Smith 0, 2590cc2dc46cSBarry Smith 0, 2591cc2dc46cSBarry Smith 0, 2592cc2dc46cSBarry Smith 0, 2593d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ, 2594273d9f13SBarry Smith 0, 2595cc2dc46cSBarry Smith 0, 2596cc2dc46cSBarry Smith 0, 2597cc2dc46cSBarry Smith 0, 2598d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2599cc2dc46cSBarry Smith 0, 2600cc2dc46cSBarry Smith 0, 2601cc2dc46cSBarry Smith 0, 2602cc2dc46cSBarry Smith 0, 2603d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2604cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2605cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2606cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 26073c896bc6SHong Zhang MatCopy_MPIBAIJ, 2608d519adbfSMatthew Knepley /*44*/ 0, 2609cc2dc46cSBarry Smith MatScale_MPIBAIJ, 2610cc2dc46cSBarry Smith 0, 2611cc2dc46cSBarry Smith 0, 2612cc2dc46cSBarry Smith 0, 2613*41c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ, 2614cc2dc46cSBarry Smith 0, 2615cc2dc46cSBarry Smith 0, 2616cc2dc46cSBarry Smith 0, 2617cc2dc46cSBarry Smith 0, 2618f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ, 2619cc2dc46cSBarry Smith 0, 2620cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 262182094794SBarry Smith MatPermute_MPIBAIJ, 2622cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2623d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2624f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2625f14a1c24SBarry Smith MatView_MPIBAIJ, 2626357abbc8SBarry Smith 0, 26277843d17aSBarry Smith 0, 2628d519adbfSMatthew Knepley /*64*/ 0, 26297843d17aSBarry Smith 0, 26307843d17aSBarry Smith 0, 26317843d17aSBarry Smith 0, 26327843d17aSBarry Smith 0, 2633d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 26347843d17aSBarry Smith 0, 263597304618SKris Buschelman 0, 263697304618SKris Buschelman 0, 263797304618SKris Buschelman 0, 2638d519adbfSMatthew Knepley /*74*/ 0, 2639f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 264097304618SKris Buschelman 0, 264197304618SKris Buschelman 0, 264297304618SKris Buschelman 0, 2643d519adbfSMatthew Knepley /*79*/ 0, 264497304618SKris Buschelman 0, 264597304618SKris Buschelman 0, 264697304618SKris Buschelman 0, 2647865e5f61SKris Buschelman MatLoad_MPIBAIJ, 2648d519adbfSMatthew Knepley /*84*/ 0, 2649865e5f61SKris Buschelman 0, 2650865e5f61SKris Buschelman 0, 2651865e5f61SKris Buschelman 0, 2652865e5f61SKris Buschelman 0, 2653d519adbfSMatthew Knepley /*89*/ 0, 2654865e5f61SKris Buschelman 0, 2655865e5f61SKris Buschelman 0, 2656865e5f61SKris Buschelman 0, 2657865e5f61SKris Buschelman 0, 2658d519adbfSMatthew Knepley /*94*/ 0, 2659865e5f61SKris Buschelman 0, 2660865e5f61SKris Buschelman 0, 266199cafbc1SBarry Smith 0, 266299cafbc1SBarry Smith 0, 2663d519adbfSMatthew Knepley /*99*/ 0, 266499cafbc1SBarry Smith 0, 266599cafbc1SBarry Smith 0, 266699cafbc1SBarry Smith 0, 266799cafbc1SBarry Smith 0, 2668d519adbfSMatthew Knepley /*104*/0, 266999cafbc1SBarry Smith MatRealPart_MPIBAIJ, 26708c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 26718c7482ecSBarry Smith 0, 26728c7482ecSBarry Smith 0, 2673d519adbfSMatthew Knepley /*109*/0, 26748c7482ecSBarry Smith 0, 26758c7482ecSBarry Smith 0, 26768c7482ecSBarry Smith 0, 26778c7482ecSBarry Smith 0, 2678f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ, 26798c7482ecSBarry Smith 0, 26808c7482ecSBarry Smith MatGetGhosts_MPIBAIJ 26818c7482ecSBarry Smith }; 268279bdfe76SSatish Balay 2683e18c124aSSatish Balay EXTERN_C_BEGIN 26844a2ae208SSatish Balay #undef __FUNCT__ 26854a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 2686be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 26875ef9f2a5SBarry Smith { 26885ef9f2a5SBarry Smith PetscFunctionBegin; 26895ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 26905ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 26915ef9f2a5SBarry Smith PetscFunctionReturn(0); 26925ef9f2a5SBarry Smith } 2693e18c124aSSatish Balay EXTERN_C_END 269479bdfe76SSatish Balay 2695273d9f13SBarry Smith EXTERN_C_BEGIN 2696f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2697d94109b8SHong Zhang EXTERN_C_END 2698d94109b8SHong Zhang 2699b8d659d7SLisandro Dalcin EXTERN_C_BEGIN 2700aac34f13SBarry Smith #undef __FUNCT__ 2701aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2702cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2703aac34f13SBarry Smith { 2704b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2705b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2706b8d659d7SLisandro Dalcin const PetscInt *JJ=0; 2707b8d659d7SLisandro Dalcin PetscScalar *values=0; 2708aac34f13SBarry Smith PetscErrorCode ierr; 2709aac34f13SBarry Smith 2710aac34f13SBarry Smith PetscFunctionBegin; 2711b8d659d7SLisandro Dalcin 2712b8d659d7SLisandro Dalcin if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs); 271326283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 271426283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 271526283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 271626283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2717d0f46423SBarry Smith m = B->rmap->n/bs; 2718d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2719d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2720d0f46423SBarry Smith cend = B->cmap->rend/bs; 2721b8d659d7SLisandro Dalcin 2722cf12db73SBarry Smith if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2723aac34f13SBarry Smith ierr = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr); 2724aac34f13SBarry Smith o_nnz = d_nnz + m; 2725aac34f13SBarry Smith for (i=0; i<m; i++) { 2726cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2727b8d659d7SLisandro Dalcin if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2728b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2729cf12db73SBarry Smith JJ = jj + ii[i]; 2730b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2731aac34f13SBarry Smith if (*JJ >= cstart) break; 2732aac34f13SBarry Smith JJ++; 2733aac34f13SBarry Smith } 2734aac34f13SBarry Smith d = 0; 2735b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2736aac34f13SBarry Smith if (*JJ++ >= cend) break; 2737aac34f13SBarry Smith d++; 2738aac34f13SBarry Smith } 2739aac34f13SBarry Smith d_nnz[i] = d; 2740b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2741aac34f13SBarry Smith } 2742aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2743aac34f13SBarry Smith ierr = PetscFree(d_nnz);CHKERRQ(ierr); 2744aac34f13SBarry Smith 2745b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2746b8d659d7SLisandro Dalcin if (!values) { 2747b8d659d7SLisandro Dalcin ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr); 2748b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2749b8d659d7SLisandro Dalcin } 2750b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2751b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2752cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2753cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2754cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2755b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 2756aac34f13SBarry Smith } 2757aac34f13SBarry Smith 2758b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2759aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2760aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2761aac34f13SBarry Smith 2762aac34f13SBarry Smith PetscFunctionReturn(0); 2763aac34f13SBarry Smith } 2764b8d659d7SLisandro Dalcin EXTERN_C_END 2765aac34f13SBarry Smith 2766aac34f13SBarry Smith #undef __FUNCT__ 2767aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2768aac34f13SBarry Smith /*@C 2769aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format 2770aac34f13SBarry Smith (the default parallel PETSc format). 2771aac34f13SBarry Smith 2772aac34f13SBarry Smith Collective on MPI_Comm 2773aac34f13SBarry Smith 2774aac34f13SBarry Smith Input Parameters: 2775aac34f13SBarry Smith + A - the matrix 2776aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2777aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2778aac34f13SBarry Smith - v - optional values in the matrix 2779aac34f13SBarry Smith 2780aac34f13SBarry Smith Level: developer 2781aac34f13SBarry Smith 2782aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2783aac34f13SBarry Smith 2784aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ 2785aac34f13SBarry Smith @*/ 2786be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2787aac34f13SBarry Smith { 2788aac34f13SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]); 2789aac34f13SBarry Smith 2790aac34f13SBarry Smith PetscFunctionBegin; 2791aac34f13SBarry Smith ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr); 2792aac34f13SBarry Smith if (f) { 2793aac34f13SBarry Smith ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr); 2794aac34f13SBarry Smith } 2795aac34f13SBarry Smith PetscFunctionReturn(0); 2796aac34f13SBarry Smith } 2797aac34f13SBarry Smith 2798d94109b8SHong Zhang EXTERN_C_BEGIN 27994a2ae208SSatish Balay #undef __FUNCT__ 2800a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2801be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz) 2802a23d5eceSKris Buschelman { 2803a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2804dfbe8321SBarry Smith PetscErrorCode ierr; 2805db4efbfdSBarry Smith PetscInt i, newbs = PetscAbs(bs); 2806a23d5eceSKris Buschelman 2807a23d5eceSKris Buschelman PetscFunctionBegin; 2808db4efbfdSBarry Smith if (bs < 0) { 28097adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr); 2810db4efbfdSBarry Smith ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr); 28118c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 2812db4efbfdSBarry Smith bs = PetscAbs(bs); 2813db4efbfdSBarry Smith } 2814db4efbfdSBarry Smith if ((d_nnz || o_nnz) && newbs != bs) { 2815db4efbfdSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz"); 2816db4efbfdSBarry Smith } 2817db4efbfdSBarry Smith bs = newbs; 2818db4efbfdSBarry Smith 2819a23d5eceSKris Buschelman 2820a23d5eceSKris Buschelman if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive"); 2821a23d5eceSKris Buschelman if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5; 2822a23d5eceSKris Buschelman if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2; 282377431f27SBarry Smith if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz); 282477431f27SBarry Smith if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz); 2825899cda47SBarry Smith 282626283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 282726283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 282826283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 282926283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2830899cda47SBarry Smith 2831a23d5eceSKris Buschelman if (d_nnz) { 2832d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 283377431f27SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2834a23d5eceSKris Buschelman } 2835a23d5eceSKris Buschelman } 2836a23d5eceSKris Buschelman if (o_nnz) { 2837d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 283877431f27SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 2839a23d5eceSKris Buschelman } 2840a23d5eceSKris Buschelman } 2841a23d5eceSKris Buschelman 2842a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 2843a23d5eceSKris Buschelman b->bs2 = bs*bs; 2844d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 2845d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 2846d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 2847d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 2848a23d5eceSKris Buschelman 2849a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 2850d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 2851a23d5eceSKris Buschelman } 2852d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 2853d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 2854d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 2855d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 2856a23d5eceSKris Buschelman 2857526dfc15SBarry Smith if (!B->preallocated) { 2858f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 2859d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 28609c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 286152e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr); 2862f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 2863d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 28649c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 286552e6d16bSBarry Smith ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr); 28667adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr); 2867526dfc15SBarry Smith } 2868a23d5eceSKris Buschelman 2869526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 2870526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 2871526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2872a23d5eceSKris Buschelman PetscFunctionReturn(0); 2873a23d5eceSKris Buschelman } 2874a23d5eceSKris Buschelman EXTERN_C_END 2875a23d5eceSKris Buschelman 2876a23d5eceSKris Buschelman EXTERN_C_BEGIN 2877be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 2878be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 287992b32695SKris Buschelman EXTERN_C_END 28805bf65638SKris Buschelman 288182094794SBarry Smith 288282094794SBarry Smith EXTERN_C_BEGIN 288382094794SBarry Smith #undef __FUNCT__ 288482094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 288582094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj) 288682094794SBarry Smith { 288782094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 288882094794SBarry Smith PetscErrorCode ierr; 288982094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 289082094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 289182094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 289282094794SBarry Smith 289382094794SBarry Smith PetscFunctionBegin; 289482094794SBarry Smith ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr); 289582094794SBarry Smith ii[0] = 0; 289682094794SBarry Smith CHKMEMQ; 289782094794SBarry Smith for (i=0; i<M; i++) { 289882094794SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 289982094794SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 290082094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 290182094794SBarry Smith /* remove one from count of matrix has diagonal */ 290282094794SBarry Smith for (j=id[i]; j<id[i+1]; j++) { 290382094794SBarry Smith if (jd[j] == i) {ii[i+1]--;break;} 290482094794SBarry Smith } 290582094794SBarry Smith CHKMEMQ; 290682094794SBarry Smith } 290782094794SBarry Smith ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr); 290882094794SBarry Smith cnt = 0; 290982094794SBarry Smith for (i=0; i<M; i++) { 291082094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 291182094794SBarry Smith if (garray[jo[j]] > rstart) break; 291282094794SBarry Smith jj[cnt++] = garray[jo[j]]; 291382094794SBarry Smith CHKMEMQ; 291482094794SBarry Smith } 291582094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 291682094794SBarry Smith if (jd[k] != i) { 291782094794SBarry Smith jj[cnt++] = rstart + jd[k]; 291882094794SBarry Smith CHKMEMQ; 291982094794SBarry Smith } 292082094794SBarry Smith } 292182094794SBarry Smith for (;j<io[i+1]; j++) { 292282094794SBarry Smith jj[cnt++] = garray[jo[j]]; 292382094794SBarry Smith CHKMEMQ; 292482094794SBarry Smith } 292582094794SBarry Smith } 292682094794SBarry Smith ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr); 292782094794SBarry Smith PetscFunctionReturn(0); 292882094794SBarry Smith } 2929dbf0e21dSBarry Smith EXTERN_C_END 293082094794SBarry Smith 29310bad9183SKris Buschelman /*MC 2932fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 29330bad9183SKris Buschelman 29340bad9183SKris Buschelman Options Database Keys: 29358c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 29368c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 29378c07d4e3SBarry Smith - -mat_use_hash_table <fact> 29380bad9183SKris Buschelman 29390bad9183SKris Buschelman Level: beginner 29400bad9183SKris Buschelman 29410bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 29420bad9183SKris Buschelman M*/ 29430bad9183SKris Buschelman 294492b32695SKris Buschelman EXTERN_C_BEGIN 2945a23d5eceSKris Buschelman #undef __FUNCT__ 29464a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 2947be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B) 2948273d9f13SBarry Smith { 2949273d9f13SBarry Smith Mat_MPIBAIJ *b; 2950dfbe8321SBarry Smith PetscErrorCode ierr; 2951273d9f13SBarry Smith PetscTruth flg; 2952273d9f13SBarry Smith 2953273d9f13SBarry Smith PetscFunctionBegin; 295438f2d2fdSLisandro Dalcin ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr); 295582502324SSatish Balay B->data = (void*)b; 295682502324SSatish Balay 2957085a36d4SBarry Smith 2958273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2959273d9f13SBarry Smith B->mapping = 0; 2960273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2961273d9f13SBarry Smith 2962273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 29637adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr); 29647adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr); 2965273d9f13SBarry Smith 2966273d9f13SBarry Smith /* build local table of row and column ownerships */ 2967899cda47SBarry Smith ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr); 2968273d9f13SBarry Smith 2969273d9f13SBarry Smith /* build cache for off array entries formed */ 29707adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr); 2971273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 2972273d9f13SBarry Smith b->colmap = PETSC_NULL; 2973273d9f13SBarry Smith b->garray = PETSC_NULL; 2974273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2975273d9f13SBarry Smith 2976273d9f13SBarry Smith /* stuff used in block assembly */ 2977273d9f13SBarry Smith b->barray = 0; 2978273d9f13SBarry Smith 2979273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2980273d9f13SBarry Smith b->lvec = 0; 2981273d9f13SBarry Smith b->Mvctx = 0; 2982273d9f13SBarry Smith 2983273d9f13SBarry Smith /* stuff for MatGetRow() */ 2984273d9f13SBarry Smith b->rowindices = 0; 2985273d9f13SBarry Smith b->rowvalues = 0; 2986273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2987273d9f13SBarry Smith 2988273d9f13SBarry Smith /* hash table stuff */ 2989273d9f13SBarry Smith b->ht = 0; 2990273d9f13SBarry Smith b->hd = 0; 2991273d9f13SBarry Smith b->ht_size = 0; 2992273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2993273d9f13SBarry Smith b->ht_fact = 0; 2994273d9f13SBarry Smith b->ht_total_ct = 0; 2995273d9f13SBarry Smith b->ht_insert_ct = 0; 2996273d9f13SBarry Smith 29977adad957SLisandro Dalcin ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 29988c07d4e3SBarry Smith ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr); 2999273d9f13SBarry Smith if (flg) { 3000f6275e2eSBarry Smith PetscReal fact = 1.39; 30014e0d8c25SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 30028c07d4e3SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr); 3003273d9f13SBarry Smith if (fact <= 1.0) fact = 1.39; 3004273d9f13SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 30051e2582c4SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 3006273d9f13SBarry Smith } 30078c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 30088c07d4e3SBarry Smith 300982094794SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C", 301082094794SBarry Smith "MatConvert_MPIBAIJ_MPIAdj", 301182094794SBarry Smith MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3012273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C", 3013273d9f13SBarry Smith "MatStoreValues_MPIBAIJ", 3014273d9f13SBarry Smith MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3015273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C", 3016273d9f13SBarry Smith "MatRetrieveValues_MPIBAIJ", 3017273d9f13SBarry Smith MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3018273d9f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C", 3019273d9f13SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 3020273d9f13SBarry Smith MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3021a23d5eceSKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C", 3022a23d5eceSKris Buschelman "MatMPIBAIJSetPreallocation_MPIBAIJ", 3023a23d5eceSKris Buschelman MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3024aac34f13SBarry Smith ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C", 302544ec7894SLisandro Dalcin "MatMPIBAIJSetPreallocationCSR_MPIBAIJ", 3026aac34f13SBarry Smith MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 302792b32695SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C", 302892b32695SKris Buschelman "MatDiagonalScaleLocal_MPIBAIJ", 302992b32695SKris Buschelman MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 30305bf65638SKris Buschelman ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C", 30315bf65638SKris Buschelman "MatSetHashTableFactor_MPIBAIJ", 30325bf65638SKris Buschelman MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 303317667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 3034273d9f13SBarry Smith PetscFunctionReturn(0); 3035273d9f13SBarry Smith } 3036273d9f13SBarry Smith EXTERN_C_END 3037273d9f13SBarry Smith 3038209238afSKris Buschelman /*MC 3039002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3040209238afSKris Buschelman 3041209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3042209238afSKris Buschelman and MATMPIBAIJ otherwise. 3043209238afSKris Buschelman 3044209238afSKris Buschelman Options Database Keys: 3045209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3046209238afSKris Buschelman 3047209238afSKris Buschelman Level: beginner 3048209238afSKris Buschelman 3049aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3050209238afSKris Buschelman M*/ 3051209238afSKris Buschelman 3052209238afSKris Buschelman EXTERN_C_BEGIN 3053209238afSKris Buschelman #undef __FUNCT__ 3054209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ" 3055be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A) 3056dfbe8321SBarry Smith { 30576849ba73SBarry Smith PetscErrorCode ierr; 3058b24ad042SBarry Smith PetscMPIInt size; 3059209238afSKris Buschelman 3060209238afSKris Buschelman PetscFunctionBegin; 30617adad957SLisandro Dalcin ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr); 3062209238afSKris Buschelman if (size == 1) { 3063209238afSKris Buschelman ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr); 3064209238afSKris Buschelman } else { 3065209238afSKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 3066209238afSKris Buschelman } 3067209238afSKris Buschelman PetscFunctionReturn(0); 3068209238afSKris Buschelman } 3069209238afSKris Buschelman EXTERN_C_END 3070209238afSKris Buschelman 30714a2ae208SSatish Balay #undef __FUNCT__ 30724a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3073273d9f13SBarry Smith /*@C 3074aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3075273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3076273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3077273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3078273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3079273d9f13SBarry Smith 3080273d9f13SBarry Smith Collective on Mat 3081273d9f13SBarry Smith 3082273d9f13SBarry Smith Input Parameters: 3083273d9f13SBarry Smith + A - the matrix 3084273d9f13SBarry Smith . bs - size of blockk 3085273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3086273d9f13SBarry Smith submatrix (same for all local rows) 3087273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3088273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 3089273d9f13SBarry Smith row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 3090273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3091273d9f13SBarry Smith submatrix (same for all local rows). 3092273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3093273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 3094273d9f13SBarry Smith each block row) or PETSC_NULL. 3095273d9f13SBarry Smith 309649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3097273d9f13SBarry Smith 3098273d9f13SBarry Smith Options Database Keys: 30998c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 31008c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3101273d9f13SBarry Smith 3102273d9f13SBarry Smith Notes: 3103273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3104273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3105273d9f13SBarry Smith 3106273d9f13SBarry Smith Storage Information: 3107273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3108273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3109273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3110273d9f13SBarry Smith local matrix (a rectangular submatrix). 3111273d9f13SBarry Smith 3112273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3113273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 3114273d9f13SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 3115273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3116273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3117273d9f13SBarry Smith 3118273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3119273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3120273d9f13SBarry Smith 3121273d9f13SBarry Smith .vb 3122273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3123273d9f13SBarry Smith ------------------- 3124273d9f13SBarry Smith row 3 | o o o d d d o o o o o o 3125273d9f13SBarry Smith row 4 | o o o d d d o o o o o o 3126273d9f13SBarry Smith row 5 | o o o d d d o o o o o o 3127273d9f13SBarry Smith ------------------- 3128273d9f13SBarry Smith .ve 3129273d9f13SBarry Smith 3130273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3131273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3132273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3133273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3134273d9f13SBarry Smith 3135273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3136273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3137273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3138273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3139273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3140273d9f13SBarry Smith matrices. 3141273d9f13SBarry Smith 3142aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3143aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3144aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3145aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3146aa95bbe8SBarry Smith 3147273d9f13SBarry Smith Level: intermediate 3148273d9f13SBarry Smith 3149273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3150273d9f13SBarry Smith 3151aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR() 3152273d9f13SBarry Smith @*/ 3153be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3154273d9f13SBarry Smith { 3155b24ad042SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]); 3156273d9f13SBarry Smith 3157273d9f13SBarry Smith PetscFunctionBegin; 3158a23d5eceSKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr); 3159a23d5eceSKris Buschelman if (f) { 3160a23d5eceSKris Buschelman ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3161273d9f13SBarry Smith } 3162273d9f13SBarry Smith PetscFunctionReturn(0); 3163273d9f13SBarry Smith } 3164273d9f13SBarry Smith 31654a2ae208SSatish Balay #undef __FUNCT__ 31664a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ" 316779bdfe76SSatish Balay /*@C 316879bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 316979bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 317079bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 317179bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 317279bdfe76SSatish Balay performance can be increased by more than a factor of 50. 317379bdfe76SSatish Balay 3174db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3175db81eaa0SLois Curfman McInnes 317679bdfe76SSatish Balay Input Parameters: 3177db81eaa0SLois Curfman McInnes + comm - MPI communicator 317879bdfe76SSatish Balay . bs - size of blockk 317979bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 318092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 318192e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 318292e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 318392e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 318492e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3185be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3186be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 318747a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 318879bdfe76SSatish Balay submatrix (same for all local rows) 318947a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 319092e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 3191db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 319247a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 319379bdfe76SSatish Balay submatrix (same for all local rows). 319447a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 319592e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 319692e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 319779bdfe76SSatish Balay 319879bdfe76SSatish Balay Output Parameter: 319979bdfe76SSatish Balay . A - the matrix 320079bdfe76SSatish Balay 3201db81eaa0SLois Curfman McInnes Options Database Keys: 32028c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 32038c07d4e3SBarry Smith - -mat_use_hash_table <fact> 32043ffaccefSLois Curfman McInnes 3205175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3206ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3207175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3208175b88e8SBarry Smith 3209b259b22eSLois Curfman McInnes Notes: 321049a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 321149a6f317SBarry Smith 321247a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 321347a75d0bSBarry Smith 321479bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 321579bdfe76SSatish Balay (possibly both). 321679bdfe76SSatish Balay 3217be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3218be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3219be79a94dSBarry Smith 322079bdfe76SSatish Balay Storage Information: 322179bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 322279bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 322379bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 322479bdfe76SSatish Balay local matrix (a rectangular submatrix). 322579bdfe76SSatish Balay 322679bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 322779bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 322879bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 322979bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 323079bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 323179bdfe76SSatish Balay 323279bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 323379bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 323479bdfe76SSatish Balay 3235db81eaa0SLois Curfman McInnes .vb 3236db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3237db81eaa0SLois Curfman McInnes ------------------- 3238db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 3239db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 3240db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 3241db81eaa0SLois Curfman McInnes ------------------- 3242db81eaa0SLois Curfman McInnes .ve 324379bdfe76SSatish Balay 324479bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 324579bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 324679bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 324757b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 324879bdfe76SSatish Balay 3249d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3250d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 325179bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 325292e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 325392e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 32546da5968aSLois Curfman McInnes matrices. 325579bdfe76SSatish Balay 3256027ccd11SLois Curfman McInnes Level: intermediate 3257027ccd11SLois Curfman McInnes 325892e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 325979bdfe76SSatish Balay 3260aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 326179bdfe76SSatish Balay @*/ 3262be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 326379bdfe76SSatish Balay { 32646849ba73SBarry Smith PetscErrorCode ierr; 3265b24ad042SBarry Smith PetscMPIInt size; 326679bdfe76SSatish Balay 3267d64ed03dSBarry Smith PetscFunctionBegin; 3268f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3269f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3270d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3271273d9f13SBarry Smith if (size > 1) { 3272273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3273273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3274273d9f13SBarry Smith } else { 3275273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3276273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 32773914022bSBarry Smith } 32783a40ed3dSBarry Smith PetscFunctionReturn(0); 327979bdfe76SSatish Balay } 3280026e39d0SSatish Balay 32814a2ae208SSatish Balay #undef __FUNCT__ 32824a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 32836849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 32840ac07820SSatish Balay { 32850ac07820SSatish Balay Mat mat; 32860ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3287dfbe8321SBarry Smith PetscErrorCode ierr; 3288b24ad042SBarry Smith PetscInt len=0; 32890ac07820SSatish Balay 3290d64ed03dSBarry Smith PetscFunctionBegin; 32910ac07820SSatish Balay *newmat = 0; 32927adad957SLisandro Dalcin ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr); 3293d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 32947adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 32951d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 32967fff6886SHong Zhang 32974beb1cfeSHong Zhang mat->factor = matin->factor; 3298273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 32990ac07820SSatish Balay mat->assembled = PETSC_TRUE; 33007fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 33017fff6886SHong Zhang 3302273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3303d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 33040ac07820SSatish Balay a->bs2 = oldmat->bs2; 33050ac07820SSatish Balay a->mbs = oldmat->mbs; 33060ac07820SSatish Balay a->nbs = oldmat->nbs; 33070ac07820SSatish Balay a->Mbs = oldmat->Mbs; 33080ac07820SSatish Balay a->Nbs = oldmat->Nbs; 33090ac07820SSatish Balay 331026283091SBarry Smith ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr); 331126283091SBarry Smith ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3312899cda47SBarry Smith 33130ac07820SSatish Balay a->size = oldmat->size; 33140ac07820SSatish Balay a->rank = oldmat->rank; 3315aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3316aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3317aef5e8e0SSatish Balay a->rowindices = 0; 33180ac07820SSatish Balay a->rowvalues = 0; 33190ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 332030793edcSSatish Balay a->barray = 0; 3321899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3322899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3323899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3324899cda47SBarry Smith a->cendbs = oldmat->cendbs; 33250ac07820SSatish Balay 3326133cdb44SSatish Balay /* hash table stuff */ 3327133cdb44SSatish Balay a->ht = 0; 3328133cdb44SSatish Balay a->hd = 0; 3329133cdb44SSatish Balay a->ht_size = 0; 3330133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 333125fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3332133cdb44SSatish Balay a->ht_total_ct = 0; 3333133cdb44SSatish Balay a->ht_insert_ct = 0; 3334133cdb44SSatish Balay 3335899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 33367adad957SLisandro Dalcin ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr); 3337d0f46423SBarry Smith ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 33380ac07820SSatish Balay if (oldmat->colmap) { 3339aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 33400f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 334148e59246SSatish Balay #else 3342b24ad042SBarry Smith ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr); 334352e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3344b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 334548e59246SSatish Balay #endif 33460ac07820SSatish Balay } else a->colmap = 0; 33474beb1cfeSHong Zhang 33480ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3349b24ad042SBarry Smith ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr); 335052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3351b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 33520ac07820SSatish Balay } else a->garray = 0; 33530ac07820SSatish Balay 33540ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 335552e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr); 33560ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 335752e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr); 33587fff6886SHong Zhang 33592e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 336052e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr); 33612e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 336252e6d16bSBarry Smith ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr); 33637adad957SLisandro Dalcin ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 33640ac07820SSatish Balay *newmat = mat; 33654beb1cfeSHong Zhang 33663a40ed3dSBarry Smith PetscFunctionReturn(0); 33670ac07820SSatish Balay } 336857b952d6SSatish Balay 3369e090d566SSatish Balay #include "petscsys.h" 337057b952d6SSatish Balay 33714a2ae208SSatish Balay #undef __FUNCT__ 33724a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ" 3373a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat) 337457b952d6SSatish Balay { 337557b952d6SSatish Balay Mat A; 33766849ba73SBarry Smith PetscErrorCode ierr; 3377b24ad042SBarry Smith int fd; 3378b24ad042SBarry Smith PetscInt i,nz,j,rstart,rend; 337987828ca2SBarry Smith PetscScalar *vals,*buf; 338057b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 338157b952d6SSatish Balay MPI_Status status; 3382b24ad042SBarry Smith PetscMPIInt rank,size,maxnz; 3383b24ad042SBarry Smith PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 3384910ba992SMatthew Knepley PetscInt *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL; 3385167e7480SBarry Smith PetscInt jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax; 3386dc231df0SBarry Smith PetscMPIInt tag = ((PetscObject)viewer)->tag; 3387910ba992SMatthew Knepley PetscInt *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount; 3388dc231df0SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 338957b952d6SSatish Balay 3390d64ed03dSBarry Smith PetscFunctionBegin; 339177925062SSatish Balay ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 33928c07d4e3SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr); 33938c07d4e3SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 339457b952d6SSatish Balay 3395d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3396d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 339757b952d6SSatish Balay if (!rank) { 3398b0a32e0cSBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 3399e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 3400552e946dSBarry Smith if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 34016c5fab8fSBarry Smith } 3402d64ed03dSBarry Smith 3403b24ad042SBarry Smith ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 340457b952d6SSatish Balay M = header[1]; N = header[2]; 340557b952d6SSatish Balay 340629bbc08cSBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices"); 340757b952d6SSatish Balay 340857b952d6SSatish Balay /* 340957b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 341057b952d6SSatish Balay divisible by the blocksize 341157b952d6SSatish Balay */ 341257b952d6SSatish Balay Mbs = M/bs; 3413dc231df0SBarry Smith extra_rows = bs - M + bs*Mbs; 341457b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 341557b952d6SSatish Balay else Mbs++; 341657b952d6SSatish Balay if (extra_rows && !rank) { 34171e2582c4SBarry Smith ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 341857b952d6SSatish Balay } 3419537820f0SBarry Smith 342057b952d6SSatish Balay /* determine ownership of all rows */ 342157b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 342257b952d6SSatish Balay m = mbs*bs; 3423dc231df0SBarry Smith ierr = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr); 3424b24ad042SBarry Smith ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 3425167e7480SBarry Smith 3426167e7480SBarry Smith /* process 0 needs enough room for process with most rows */ 3427167e7480SBarry Smith if (!rank) { 3428167e7480SBarry Smith mmax = rowners[1]; 3429167e7480SBarry Smith for (i=2; i<size; i++) { 3430167e7480SBarry Smith mmax = PetscMax(mmax,rowners[i]); 3431167e7480SBarry Smith } 3432ca02efcfSSatish Balay mmax*=bs; 3433167e7480SBarry Smith } else mmax = m; 3434167e7480SBarry Smith 343557b952d6SSatish Balay rowners[0] = 0; 3436cee3aa6bSSatish Balay for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 3437cee3aa6bSSatish Balay for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 343857b952d6SSatish Balay rstart = rowners[rank]; 343957b952d6SSatish Balay rend = rowners[rank+1]; 344057b952d6SSatish Balay 344157b952d6SSatish Balay /* distribute row lengths to all processors */ 344219c38ff2SBarry Smith ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr); 344357b952d6SSatish Balay if (!rank) { 3444dc231df0SBarry Smith mend = m; 3445dc231df0SBarry Smith if (size == 1) mend = mend - extra_rows; 3446dc231df0SBarry Smith ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 3447dc231df0SBarry Smith for (j=mend; j<m; j++) locrowlens[j] = 1; 3448dc231df0SBarry Smith ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr); 3449b24ad042SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr); 3450b24ad042SBarry Smith ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr); 3451dc231df0SBarry Smith for (j=0; j<m; j++) { 3452dc231df0SBarry Smith procsnz[0] += locrowlens[j]; 3453dc231df0SBarry Smith } 3454dc231df0SBarry Smith for (i=1; i<size; i++) { 3455dc231df0SBarry Smith mend = browners[i+1] - browners[i]; 3456dc231df0SBarry Smith if (i == size-1) mend = mend - extra_rows; 3457dc231df0SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 3458dc231df0SBarry Smith for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 3459dc231df0SBarry Smith /* calculate the number of nonzeros on each processor */ 3460dc231df0SBarry Smith for (j=0; j<browners[i+1]-browners[i]; j++) { 346157b952d6SSatish Balay procsnz[i] += rowlengths[j]; 346257b952d6SSatish Balay } 3463dc231df0SBarry Smith ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 346457b952d6SSatish Balay } 3465606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 3466dc231df0SBarry Smith } else { 3467dc231df0SBarry Smith ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3468dc231df0SBarry Smith } 346957b952d6SSatish Balay 3470dc231df0SBarry Smith if (!rank) { 347157b952d6SSatish Balay /* determine max buffer needed and allocate it */ 34728a8e0b3aSBarry Smith maxnz = procsnz[0]; 3473cdc0ba36SBarry Smith for (i=1; i<size; i++) { 347457b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 347557b952d6SSatish Balay } 3476b24ad042SBarry Smith ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr); 347757b952d6SSatish Balay 347857b952d6SSatish Balay /* read in my part of the matrix column indices */ 347957b952d6SSatish Balay nz = procsnz[0]; 348019c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 348157b952d6SSatish Balay mycols = ibuf; 3482cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3483e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 3484cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 3485cee3aa6bSSatish Balay 348657b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 348757b952d6SSatish Balay for (i=1; i<size-1; i++) { 348857b952d6SSatish Balay nz = procsnz[i]; 3489e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 3490b24ad042SBarry Smith ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 349157b952d6SSatish Balay } 349257b952d6SSatish Balay /* read in the stuff for the last proc */ 349357b952d6SSatish Balay if (size != 1) { 349457b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 3495e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 349657b952d6SSatish Balay for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 3497b24ad042SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 349857b952d6SSatish Balay } 3499606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 3500d64ed03dSBarry Smith } else { 350157b952d6SSatish Balay /* determine buffer space needed for message */ 350257b952d6SSatish Balay nz = 0; 350357b952d6SSatish Balay for (i=0; i<m; i++) { 350457b952d6SSatish Balay nz += locrowlens[i]; 350557b952d6SSatish Balay } 350619c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr); 350757b952d6SSatish Balay mycols = ibuf; 350857b952d6SSatish Balay /* receive message of column indices*/ 3509b24ad042SBarry Smith ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 3510b24ad042SBarry Smith ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 351129bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 351257b952d6SSatish Balay } 351357b952d6SSatish Balay 351457b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 3515dc231df0SBarry Smith ierr = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr); 3516dc231df0SBarry Smith ierr = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr); 3517dc231df0SBarry Smith ierr = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3518dc231df0SBarry Smith ierr = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 3519dc231df0SBarry Smith ierr = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr); 352057b952d6SSatish Balay rowcount = 0; nzcount = 0; 352157b952d6SSatish Balay for (i=0; i<mbs; i++) { 352257b952d6SSatish Balay dcount = 0; 352357b952d6SSatish Balay odcount = 0; 352457b952d6SSatish Balay for (j=0; j<bs; j++) { 352557b952d6SSatish Balay kmax = locrowlens[rowcount]; 352657b952d6SSatish Balay for (k=0; k<kmax; k++) { 352757b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 352857b952d6SSatish Balay if (!mask[tmp]) { 352957b952d6SSatish Balay mask[tmp] = 1; 353057b952d6SSatish Balay if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 353157b952d6SSatish Balay else masked1[dcount++] = tmp; 353257b952d6SSatish Balay } 353357b952d6SSatish Balay } 353457b952d6SSatish Balay rowcount++; 353557b952d6SSatish Balay } 3536cee3aa6bSSatish Balay 353757b952d6SSatish Balay dlens[i] = dcount; 353857b952d6SSatish Balay odlens[i] = odcount; 3539cee3aa6bSSatish Balay 354057b952d6SSatish Balay /* zero out the mask elements we set */ 354157b952d6SSatish Balay for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 354257b952d6SSatish Balay for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 354357b952d6SSatish Balay } 3544cee3aa6bSSatish Balay 354557b952d6SSatish Balay /* create our matrix */ 3546f69a0ea3SMatthew Knepley ierr = MatCreate(comm,&A);CHKERRQ(ierr); 3547f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 354878ae41b4SKris Buschelman ierr = MatSetType(A,type);CHKERRQ(ierr) 354978ae41b4SKris Buschelman ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr); 355078ae41b4SKris Buschelman 355157b952d6SSatish Balay if (!rank) { 355219c38ff2SBarry Smith ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 355357b952d6SSatish Balay /* read in my part of the matrix numerical values */ 355457b952d6SSatish Balay nz = procsnz[0]; 355557b952d6SSatish Balay vals = buf; 3556cee3aa6bSSatish Balay mycols = ibuf; 3557cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 3558e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3559cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 3560537820f0SBarry Smith 356157b952d6SSatish Balay /* insert into matrix */ 356257b952d6SSatish Balay jj = rstart*bs; 356357b952d6SSatish Balay for (i=0; i<m; i++) { 3564dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 356557b952d6SSatish Balay mycols += locrowlens[i]; 356657b952d6SSatish Balay vals += locrowlens[i]; 356757b952d6SSatish Balay jj++; 356857b952d6SSatish Balay } 356957b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 357057b952d6SSatish Balay for (i=1; i<size-1; i++) { 357157b952d6SSatish Balay nz = procsnz[i]; 357257b952d6SSatish Balay vals = buf; 3573e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 35747adad957SLisandro Dalcin ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 357557b952d6SSatish Balay } 357657b952d6SSatish Balay /* the last proc */ 357757b952d6SSatish Balay if (size != 1){ 357857b952d6SSatish Balay nz = procsnz[i] - extra_rows; 3579cee3aa6bSSatish Balay vals = buf; 3580e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 358157b952d6SSatish Balay for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 35827adad957SLisandro Dalcin ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr); 358357b952d6SSatish Balay } 3584606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 3585d64ed03dSBarry Smith } else { 358657b952d6SSatish Balay /* receive numeric values */ 358719c38ff2SBarry Smith ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr); 358857b952d6SSatish Balay 358957b952d6SSatish Balay /* receive message of values*/ 359057b952d6SSatish Balay vals = buf; 3591cee3aa6bSSatish Balay mycols = ibuf; 35927adad957SLisandro Dalcin ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr); 3593ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 359429bbc08cSBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 359557b952d6SSatish Balay 359657b952d6SSatish Balay /* insert into matrix */ 359757b952d6SSatish Balay jj = rstart*bs; 3598cee3aa6bSSatish Balay for (i=0; i<m; i++) { 3599dc231df0SBarry Smith ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 360057b952d6SSatish Balay mycols += locrowlens[i]; 360157b952d6SSatish Balay vals += locrowlens[i]; 360257b952d6SSatish Balay jj++; 360357b952d6SSatish Balay } 360457b952d6SSatish Balay } 3605606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 3606606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 3607606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 3608dc231df0SBarry Smith ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 3609dc231df0SBarry Smith ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 3610dc231df0SBarry Smith ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 36116d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 36126d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 361378ae41b4SKris Buschelman 361478ae41b4SKris Buschelman *newmat = A; 36153a40ed3dSBarry Smith PetscFunctionReturn(0); 361657b952d6SSatish Balay } 361757b952d6SSatish Balay 36184a2ae208SSatish Balay #undef __FUNCT__ 36194a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3620133cdb44SSatish Balay /*@ 3621133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3622133cdb44SSatish Balay 3623133cdb44SSatish Balay Input Parameters: 3624133cdb44SSatish Balay . mat - the matrix 3625133cdb44SSatish Balay . fact - factor 3626133cdb44SSatish Balay 3627fee21e36SBarry Smith Collective on Mat 3628fee21e36SBarry Smith 36298c890885SBarry Smith Level: advanced 36308c890885SBarry Smith 3631133cdb44SSatish Balay Notes: 36328c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3633133cdb44SSatish Balay 3634133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3635133cdb44SSatish Balay 3636133cdb44SSatish Balay .seealso: MatSetOption() 3637133cdb44SSatish Balay @*/ 3638be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3639133cdb44SSatish Balay { 3640dfbe8321SBarry Smith PetscErrorCode ierr,(*f)(Mat,PetscReal); 36415bf65638SKris Buschelman 36425bf65638SKris Buschelman PetscFunctionBegin; 36435bf65638SKris Buschelman ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr); 36445bf65638SKris Buschelman if (f) { 36455bf65638SKris Buschelman ierr = (*f)(mat,fact);CHKERRQ(ierr); 36465bf65638SKris Buschelman } 36475bf65638SKris Buschelman PetscFunctionReturn(0); 36485bf65638SKris Buschelman } 36495bf65638SKris Buschelman 3650be1d678aSKris Buschelman EXTERN_C_BEGIN 36515bf65638SKris Buschelman #undef __FUNCT__ 36525bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 3653be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 36545bf65638SKris Buschelman { 365525fdafccSSatish Balay Mat_MPIBAIJ *baij; 3656133cdb44SSatish Balay 3657133cdb44SSatish Balay PetscFunctionBegin; 3658133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3659133cdb44SSatish Balay baij->ht_fact = fact; 3660133cdb44SSatish Balay PetscFunctionReturn(0); 3661133cdb44SSatish Balay } 3662be1d678aSKris Buschelman EXTERN_C_END 3663f2a5309cSSatish Balay 36644a2ae208SSatish Balay #undef __FUNCT__ 36654a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 3666be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[]) 3667f2a5309cSSatish Balay { 3668f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3669f2a5309cSSatish Balay PetscFunctionBegin; 3670f2a5309cSSatish Balay *Ad = a->A; 3671f2a5309cSSatish Balay *Ao = a->B; 3672195d93cdSBarry Smith *colmap = a->garray; 3673f2a5309cSSatish Balay PetscFunctionReturn(0); 3674f2a5309cSSatish Balay } 367585535b8eSBarry Smith 367685535b8eSBarry Smith /* 367785535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 367885535b8eSBarry Smith */ 367985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 368085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 368185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 368285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 368385535b8eSBarry Smith #endif 368485535b8eSBarry Smith 368585535b8eSBarry Smith #undef __FUNCT__ 368685535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 368785535b8eSBarry Smith /*@C 368885535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 368985535b8eSBarry Smith 369085535b8eSBarry Smith Collective on Mat 369185535b8eSBarry Smith 369285535b8eSBarry Smith Input Parameters: 369385535b8eSBarry Smith + mat - the matrix 369485535b8eSBarry Smith . min - number of input rows 369585535b8eSBarry Smith . im - input rows 369685535b8eSBarry Smith . nin - number of input columns 369785535b8eSBarry Smith . in - input columns 369885535b8eSBarry Smith . v - numerical values input 369985535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 370085535b8eSBarry Smith 370185535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 370285535b8eSBarry Smith 370385535b8eSBarry Smith Level: advanced 370485535b8eSBarry Smith 370585535b8eSBarry Smith .seealso: MatSetValuesBlocked() 370685535b8eSBarry Smith @*/ 370785535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 370885535b8eSBarry Smith { 370985535b8eSBarry Smith /* convert input arguments to C version */ 371085535b8eSBarry Smith Mat mat = *matin; 371185535b8eSBarry Smith PetscInt m = *min, n = *nin; 371285535b8eSBarry Smith InsertMode addv = *addvin; 371385535b8eSBarry Smith 371485535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 371585535b8eSBarry Smith const MatScalar *value; 371685535b8eSBarry Smith MatScalar *barray=baij->barray; 371785535b8eSBarry Smith PetscTruth roworiented = baij->roworiented; 371885535b8eSBarry Smith PetscErrorCode ierr; 371985535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 372085535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3721d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 372285535b8eSBarry Smith 372385535b8eSBarry Smith PetscFunctionBegin; 372485535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 372585535b8eSBarry Smith if (mat->insertmode == NOT_SET_VALUES) { 372685535b8eSBarry Smith mat->insertmode = addv; 372785535b8eSBarry Smith } 372885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 372985535b8eSBarry Smith else if (mat->insertmode != addv) { 373085535b8eSBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 373185535b8eSBarry Smith } 373285535b8eSBarry Smith if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 373385535b8eSBarry Smith #endif 373485535b8eSBarry Smith if (mat->assembled) { 373585535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 373685535b8eSBarry Smith mat->assembled = PETSC_FALSE; 373785535b8eSBarry Smith } 373885535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 373985535b8eSBarry Smith 374085535b8eSBarry Smith 374185535b8eSBarry Smith if(!barray) { 374285535b8eSBarry Smith ierr = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr); 374385535b8eSBarry Smith baij->barray = barray; 374485535b8eSBarry Smith } 374585535b8eSBarry Smith 374685535b8eSBarry Smith if (roworiented) { 374785535b8eSBarry Smith stepval = (n-1)*bs; 374885535b8eSBarry Smith } else { 374985535b8eSBarry Smith stepval = (m-1)*bs; 375085535b8eSBarry Smith } 375185535b8eSBarry Smith for (i=0; i<m; i++) { 375285535b8eSBarry Smith if (im[i] < 0) continue; 375385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 375485535b8eSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 375585535b8eSBarry Smith #endif 375685535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 375785535b8eSBarry Smith row = im[i] - rstart; 375885535b8eSBarry Smith for (j=0; j<n; j++) { 375985535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 376085535b8eSBarry Smith if ((roworiented) && (n == 1)) { 376185535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 376285535b8eSBarry Smith } else if((!roworiented) && (m == 1)) { 376385535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 376485535b8eSBarry Smith } else { /* Here a copy is required */ 376585535b8eSBarry Smith if (roworiented) { 376685535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 376785535b8eSBarry Smith } else { 376885535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 376985535b8eSBarry Smith } 377085535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 377185535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 377285535b8eSBarry Smith *barray++ = *value++; 377385535b8eSBarry Smith } 377485535b8eSBarry Smith } 377585535b8eSBarry Smith barray -=bs2; 377685535b8eSBarry Smith } 377785535b8eSBarry Smith 377885535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend){ 377985535b8eSBarry Smith col = in[j] - cstart; 378097e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 378185535b8eSBarry Smith } 378285535b8eSBarry Smith else if (in[j] < 0) continue; 378385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 378485535b8eSBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);} 378585535b8eSBarry Smith #endif 378685535b8eSBarry Smith else { 378785535b8eSBarry Smith if (mat->was_assembled) { 378885535b8eSBarry Smith if (!baij->colmap) { 378985535b8eSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 379085535b8eSBarry Smith } 379185535b8eSBarry Smith 379285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 379385535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 379485535b8eSBarry Smith { PetscInt data; 379585535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 379685535b8eSBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 379785535b8eSBarry Smith } 379885535b8eSBarry Smith #else 379985535b8eSBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap"); 380085535b8eSBarry Smith #endif 380185535b8eSBarry Smith #endif 380285535b8eSBarry Smith #if defined (PETSC_USE_CTABLE) 380385535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 380485535b8eSBarry Smith col = (col - 1)/bs; 380585535b8eSBarry Smith #else 380685535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 380785535b8eSBarry Smith #endif 380885535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 380985535b8eSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 381085535b8eSBarry Smith col = in[j]; 381185535b8eSBarry Smith } 381285535b8eSBarry Smith } 381385535b8eSBarry Smith else col = in[j]; 381497e5c40aSBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 381585535b8eSBarry Smith } 381685535b8eSBarry Smith } 381785535b8eSBarry Smith } else { 381885535b8eSBarry Smith if (!baij->donotstash) { 381985535b8eSBarry Smith if (roworiented) { 382085535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 382185535b8eSBarry Smith } else { 382285535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 382385535b8eSBarry Smith } 382485535b8eSBarry Smith } 382585535b8eSBarry Smith } 382685535b8eSBarry Smith } 382785535b8eSBarry Smith 382885535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 382985535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 383085535b8eSBarry Smith PetscFunctionReturn(0); 383185535b8eSBarry Smith } 3832