xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 41c166b161c7dce5d06e24db58189774b43d9506)
1be1d678aSKris Buschelman #define PETSCMAT_DLL
279bdfe76SSatish Balay 
37c4f633dSBarry Smith #include "../src/mat/impls/baij/mpi/mpibaij.h"   /*I  "petscmat.h"  I*/
479bdfe76SSatish Balay 
5dfbe8321SBarry Smith EXTERN PetscErrorCode MatSetUpMultiply_MPIBAIJ(Mat);
6dfbe8321SBarry Smith EXTERN PetscErrorCode DisAssemble_MPIBAIJ(Mat);
7b24ad042SBarry Smith EXTERN PetscErrorCode MatIncreaseOverlap_MPIBAIJ(Mat,PetscInt,IS[],PetscInt);
8b24ad042SBarry Smith EXTERN PetscErrorCode MatGetSubMatrices_MPIBAIJ(Mat,PetscInt,const IS[],const IS[],MatReuse,Mat *[]);
9b24ad042SBarry Smith EXTERN PetscErrorCode MatGetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],PetscScalar []);
10b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValues_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt [],const PetscScalar [],InsertMode);
11b24ad042SBarry Smith EXTERN PetscErrorCode MatSetValuesBlocked_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscInt,const PetscInt[],const PetscScalar[],InsertMode);
12b24ad042SBarry Smith EXTERN PetscErrorCode MatGetRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
13b24ad042SBarry Smith EXTERN PetscErrorCode MatRestoreRow_SeqBAIJ(Mat,PetscInt,PetscInt*,PetscInt*[],PetscScalar*[]);
14f4df32b1SMatthew Knepley EXTERN PetscErrorCode MatZeroRows_SeqBAIJ(Mat,PetscInt,const PetscInt[],PetscScalar);
1593fea6afSBarry Smith 
164a2ae208SSatish Balay #undef __FUNCT__
17985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
18985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
197843d17aSBarry Smith {
207843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
21dfbe8321SBarry Smith   PetscErrorCode ierr;
22985db425SBarry Smith   PetscInt       i,*idxb = 0;
2387828ca2SBarry Smith   PetscScalar    *va,*vb;
247843d17aSBarry Smith   Vec            vtmp;
257843d17aSBarry Smith 
267843d17aSBarry Smith   PetscFunctionBegin;
27985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
281ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
29985db425SBarry Smith   if (idx) {
30192daf7cSBarry Smith     for (i=0; i<A->rmap->n; i++) {if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;}
31985db425SBarry Smith   }
327843d17aSBarry Smith 
33d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
34d0f46423SBarry Smith   if (idx) {ierr = PetscMalloc(A->rmap->n*sizeof(PetscInt),&idxb);CHKERRQ(ierr);}
35985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
361ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
377843d17aSBarry Smith 
38d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++){
39d0f46423SBarry Smith     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {va[i] = vb[i]; if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);}
407843d17aSBarry Smith   }
417843d17aSBarry Smith 
421ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
431ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
44985db425SBarry Smith   if (idxb) {ierr = PetscFree(idxb);CHKERRQ(ierr);}
45ac355199SBarry Smith   ierr = VecDestroy(vtmp);CHKERRQ(ierr);
467843d17aSBarry Smith   PetscFunctionReturn(0);
477843d17aSBarry Smith }
487843d17aSBarry Smith 
497fc3c18eSBarry Smith EXTERN_C_BEGIN
504a2ae208SSatish Balay #undef __FUNCT__
514a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
52be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatStoreValues_MPIBAIJ(Mat mat)
537fc3c18eSBarry Smith {
547fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
55dfbe8321SBarry Smith   PetscErrorCode ierr;
567fc3c18eSBarry Smith 
577fc3c18eSBarry Smith   PetscFunctionBegin;
587fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
597fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
607fc3c18eSBarry Smith   PetscFunctionReturn(0);
617fc3c18eSBarry Smith }
627fc3c18eSBarry Smith EXTERN_C_END
637fc3c18eSBarry Smith 
647fc3c18eSBarry Smith EXTERN_C_BEGIN
654a2ae208SSatish Balay #undef __FUNCT__
664a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
67be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatRetrieveValues_MPIBAIJ(Mat mat)
687fc3c18eSBarry Smith {
697fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ *)mat->data;
70dfbe8321SBarry Smith   PetscErrorCode ierr;
717fc3c18eSBarry Smith 
727fc3c18eSBarry Smith   PetscFunctionBegin;
737fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
747fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
757fc3c18eSBarry Smith   PetscFunctionReturn(0);
767fc3c18eSBarry Smith }
777fc3c18eSBarry Smith EXTERN_C_END
787fc3c18eSBarry Smith 
79537820f0SBarry Smith /*
80537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
8157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
8257b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
8357b952d6SSatish Balay    length of colmap equals the global matrix length.
8457b952d6SSatish Balay */
854a2ae208SSatish Balay #undef __FUNCT__
864a2ae208SSatish Balay #define __FUNCT__ "CreateColmap_MPIBAIJ_Private"
87dfbe8321SBarry Smith PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat mat)
8857b952d6SSatish Balay {
8957b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
9057b952d6SSatish Balay   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
916849ba73SBarry Smith   PetscErrorCode ierr;
92d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
9357b952d6SSatish Balay 
94d64ed03dSBarry Smith   PetscFunctionBegin;
95aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
96f14a1c24SBarry Smith   ierr = PetscTableCreate(baij->nbs,&baij->colmap);CHKERRQ(ierr);
9748e59246SSatish Balay   for (i=0; i<nbs; i++){
980f5bd95cSBarry Smith     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
9948e59246SSatish Balay   }
10048e59246SSatish Balay #else
101b24ad042SBarry Smith   ierr = PetscMalloc((baij->Nbs+1)*sizeof(PetscInt),&baij->colmap);CHKERRQ(ierr);
10252e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
103b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
104928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
10548e59246SSatish Balay #endif
1063a40ed3dSBarry Smith   PetscFunctionReturn(0);
10757b952d6SSatish Balay }
10857b952d6SSatish Balay 
10980c1aa95SSatish Balay #define CHUNKSIZE  10
11080c1aa95SSatish Balay 
111f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
11280c1aa95SSatish Balay { \
11380c1aa95SSatish Balay  \
11480c1aa95SSatish Balay     brow = row/bs;  \
11580c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
116ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
11780c1aa95SSatish Balay       bcol = col/bs; \
11880c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
119ab26458aSBarry Smith       low = 0; high = nrow; \
120ab26458aSBarry Smith       while (high-low > 3) { \
121ab26458aSBarry Smith         t = (low+high)/2; \
122ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
123ab26458aSBarry Smith         else              low  = t; \
124ab26458aSBarry Smith       } \
125ab26458aSBarry Smith       for (_i=low; _i<high; _i++) { \
12680c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
12780c1aa95SSatish Balay         if (rp[_i] == bcol) { \
12880c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
129eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
130eada6651SSatish Balay           else                    *bap  = value;  \
131ac7a638eSSatish Balay           goto a_noinsert; \
13280c1aa95SSatish Balay         } \
13380c1aa95SSatish Balay       } \
13489280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
135085a36d4SBarry Smith       if (a->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
136421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
13780c1aa95SSatish Balay       N = nrow++ - 1;  \
13880c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
13980c1aa95SSatish Balay       for (ii=N; ii>=_i; ii--) { \
14080c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
1413eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
14280c1aa95SSatish Balay       } \
1433eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
14480c1aa95SSatish Balay       rp[_i]                      = bcol;  \
14580c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
146ac7a638eSSatish Balay       a_noinsert:; \
14780c1aa95SSatish Balay     ailen[brow] = nrow; \
14880c1aa95SSatish Balay }
14957b952d6SSatish Balay 
150ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
151ac7a638eSSatish Balay { \
152ac7a638eSSatish Balay     brow = row/bs;  \
153ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
154ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
155ac7a638eSSatish Balay       bcol = col/bs; \
156ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
157ac7a638eSSatish Balay       low = 0; high = nrow; \
158ac7a638eSSatish Balay       while (high-low > 3) { \
159ac7a638eSSatish Balay         t = (low+high)/2; \
160ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
161ac7a638eSSatish Balay         else              low  = t; \
162ac7a638eSSatish Balay       } \
163ac7a638eSSatish Balay       for (_i=low; _i<high; _i++) { \
164ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
165ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
166ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
167ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
168ac7a638eSSatish Balay           else                    *bap  = value;  \
169ac7a638eSSatish Balay           goto b_noinsert; \
170ac7a638eSSatish Balay         } \
171ac7a638eSSatish Balay       } \
17289280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
173085a36d4SBarry Smith       if (b->nonew == -1) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", row, col); \
174421e10b8SBarry Smith       MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
175085a36d4SBarry Smith       CHKMEMQ;\
176ac7a638eSSatish Balay       N = nrow++ - 1;  \
177ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
178ac7a638eSSatish Balay       for (ii=N; ii>=_i; ii--) { \
179ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
1803eda8832SBarry Smith         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
181ac7a638eSSatish Balay       } \
1823eda8832SBarry Smith       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
183ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
184ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
185ac7a638eSSatish Balay       b_noinsert:; \
186ac7a638eSSatish Balay     bilen[brow] = nrow; \
187ac7a638eSSatish Balay }
188ac7a638eSSatish Balay 
1894a2ae208SSatish Balay #undef __FUNCT__
1904a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
191b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
19257b952d6SSatish Balay {
19357b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
19493fea6afSBarry Smith   MatScalar      value;
195273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
196dfbe8321SBarry Smith   PetscErrorCode ierr;
197b24ad042SBarry Smith   PetscInt       i,j,row,col;
198d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
199d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,cstart_orig=mat->cmap->rstart;
200d0f46423SBarry Smith   PetscInt       cend_orig=mat->cmap->rend,bs=mat->rmap->bs;
20157b952d6SSatish Balay 
202eada6651SSatish Balay   /* Some Variables required in the macro */
20380c1aa95SSatish Balay   Mat            A = baij->A;
20480c1aa95SSatish Balay   Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)(A)->data;
205b24ad042SBarry Smith   PetscInt       *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
2063eda8832SBarry Smith   MatScalar      *aa=a->a;
207ac7a638eSSatish Balay 
208ac7a638eSSatish Balay   Mat            B = baij->B;
209ac7a638eSSatish Balay   Mat_SeqBAIJ    *b = (Mat_SeqBAIJ*)(B)->data;
210b24ad042SBarry Smith   PetscInt       *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2113eda8832SBarry Smith   MatScalar      *ba=b->a;
212ac7a638eSSatish Balay 
213b24ad042SBarry Smith   PetscInt       *rp,ii,nrow,_i,rmax,N,brow,bcol;
214b24ad042SBarry Smith   PetscInt       low,high,t,ridx,cidx,bs2=a->bs2;
2153eda8832SBarry Smith   MatScalar      *ap,*bap;
21680c1aa95SSatish Balay 
217d64ed03dSBarry Smith   PetscFunctionBegin;
21857b952d6SSatish Balay   for (i=0; i<m; i++) {
2195ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2202515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
221d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
222639f9d9dSBarry Smith #endif
22357b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
22457b952d6SSatish Balay       row = im[i] - rstart_orig;
22557b952d6SSatish Balay       for (j=0; j<n; j++) {
22657b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
22757b952d6SSatish Balay           col = in[j] - cstart_orig;
22857b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
229f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
23080c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
23173959e64SBarry Smith         } else if (in[j] < 0) continue;
2322515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
233d0f46423SBarry Smith         else if (in[j] >= mat->cmap->N) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[i],mat->cmap->N-1);}
234639f9d9dSBarry Smith #endif
23557b952d6SSatish Balay         else {
23657b952d6SSatish Balay           if (mat->was_assembled) {
237905e6a2fSBarry Smith             if (!baij->colmap) {
238905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
239905e6a2fSBarry Smith             }
240aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2410f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
242bba1ac68SSatish Balay             col  = col - 1;
24348e59246SSatish Balay #else
244bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
24548e59246SSatish Balay #endif
24657b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
24757b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2488295de27SSatish Balay               col =  in[j];
2499bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2509bf004c3SSatish Balay               B = baij->B;
2519bf004c3SSatish Balay               b = (Mat_SeqBAIJ*)(B)->data;
2529bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2539bf004c3SSatish Balay               ba=b->a;
254bba1ac68SSatish Balay             } else col += in[j]%bs;
2558295de27SSatish Balay           } else col = in[j];
25657b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
25790da58bdSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
25890da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25957b952d6SSatish Balay         }
26057b952d6SSatish Balay       }
261d64ed03dSBarry Smith     } else {
26290f02eecSBarry Smith       if (!baij->donotstash) {
263ff2fd236SBarry Smith         if (roworiented) {
264b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
265ff2fd236SBarry Smith         } else {
266b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26757b952d6SSatish Balay         }
26857b952d6SSatish Balay       }
26957b952d6SSatish Balay     }
27090f02eecSBarry Smith   }
2713a40ed3dSBarry Smith   PetscFunctionReturn(0);
27257b952d6SSatish Balay }
27357b952d6SSatish Balay 
2744a2ae208SSatish Balay #undef __FUNCT__
27597e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
27697e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
277ab26458aSBarry Smith {
278ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
279dd6ea824SBarry Smith   const PetscScalar *value;
280f15d580aSBarry Smith   MatScalar         *barray=baij->barray;
281273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
282dfbe8321SBarry Smith   PetscErrorCode    ierr;
283899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
284899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
285d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
286ab26458aSBarry Smith 
287b16ae2b1SBarry Smith   PetscFunctionBegin;
28830793edcSSatish Balay   if(!barray) {
28982502324SSatish Balay     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
29082502324SSatish Balay     baij->barray = barray;
29130793edcSSatish Balay   }
29230793edcSSatish Balay 
293ab26458aSBarry Smith   if (roworiented) {
294ab26458aSBarry Smith     stepval = (n-1)*bs;
295ab26458aSBarry Smith   } else {
296ab26458aSBarry Smith     stepval = (m-1)*bs;
297ab26458aSBarry Smith   }
298ab26458aSBarry Smith   for (i=0; i<m; i++) {
2995ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3002515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
30177431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
302ab26458aSBarry Smith #endif
303ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
304ab26458aSBarry Smith       row = im[i] - rstart;
305ab26458aSBarry Smith       for (j=0; j<n; j++) {
30615b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
30715b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
308f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
30915b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
310f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
31115b57d14SSatish Balay         } else { /* Here a copy is required */
312ab26458aSBarry Smith           if (roworiented) {
313ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
314ab26458aSBarry Smith           } else {
315ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
316abef11f7SSatish Balay           }
31747513183SBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
31847513183SBarry Smith             for (jj=0; jj<bs; jj++) {
31930793edcSSatish Balay               *barray++  = *value++;
32047513183SBarry Smith             }
32147513183SBarry Smith           }
32230793edcSSatish Balay           barray -=bs2;
32315b57d14SSatish Balay         }
324abef11f7SSatish Balay 
325abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
326abef11f7SSatish Balay           col  = in[j] - cstart;
32797e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
328ab26458aSBarry Smith         }
3295ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
3302515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
33177431f27SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
332ab26458aSBarry Smith #endif
333ab26458aSBarry Smith         else {
334ab26458aSBarry Smith           if (mat->was_assembled) {
335ab26458aSBarry Smith             if (!baij->colmap) {
336ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
337ab26458aSBarry Smith             }
338a5eb4965SSatish Balay 
3392515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
340aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
341b24ad042SBarry Smith             { PetscInt data;
3420f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
34329bbc08cSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
344fa46199cSSatish Balay             }
34548e59246SSatish Balay #else
34629bbc08cSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
347a5eb4965SSatish Balay #endif
34848e59246SSatish Balay #endif
349aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
3500f5bd95cSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
351fa46199cSSatish Balay             col  = (col - 1)/bs;
35248e59246SSatish Balay #else
353a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
35448e59246SSatish Balay #endif
355ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
356ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
357ab26458aSBarry Smith               col =  in[j];
358ab26458aSBarry Smith             }
359ab26458aSBarry Smith           }
360ab26458aSBarry Smith           else col = in[j];
36197e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
362ab26458aSBarry Smith         }
363ab26458aSBarry Smith       }
364d64ed03dSBarry Smith     } else {
365ab26458aSBarry Smith       if (!baij->donotstash) {
366ff2fd236SBarry Smith         if (roworiented) {
3676fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
368ff2fd236SBarry Smith         } else {
3696fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
370ff2fd236SBarry Smith         }
371abef11f7SSatish Balay       }
372ab26458aSBarry Smith     }
373ab26458aSBarry Smith   }
3743a40ed3dSBarry Smith   PetscFunctionReturn(0);
375ab26458aSBarry Smith }
3766fa18ffdSBarry Smith 
3770bdbc534SSatish Balay #define HASH_KEY 0.6180339887
378b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
379b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
380b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
3814a2ae208SSatish Balay #undef __FUNCT__
38297e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
38397e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
3840bdbc534SSatish Balay {
3850bdbc534SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
386273d9f13SBarry Smith   PetscTruth     roworiented = baij->roworiented;
387dfbe8321SBarry Smith   PetscErrorCode ierr;
388b24ad042SBarry Smith   PetscInt       i,j,row,col;
389d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
390d0f46423SBarry Smith   PetscInt       rend_orig=mat->rmap->rend,Nbs=baij->Nbs;
391d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
392329f5518SBarry Smith   PetscReal      tmp;
3933eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
395b24ad042SBarry Smith   PetscInt       total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
3964a15367fSSatish Balay #endif
3970bdbc534SSatish Balay 
3980bdbc534SSatish Balay   PetscFunctionBegin;
3990bdbc534SSatish Balay 
4000bdbc534SSatish Balay   for (i=0; i<m; i++) {
4012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
40229bbc08cSBarry Smith     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
403d0f46423SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4040bdbc534SSatish Balay #endif
4050bdbc534SSatish Balay       row = im[i];
406c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4070bdbc534SSatish Balay       for (j=0; j<n; j++) {
4080bdbc534SSatish Balay         col = in[j];
4096fa18ffdSBarry Smith         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
410b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
411c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
412c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4130bdbc534SSatish Balay 
414c2760754SSatish Balay 
415c2760754SSatish Balay         idx = h1;
4162515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
417187ce0cbSSatish Balay         insert_ct++;
418187ce0cbSSatish Balay         total_ct++;
419187ce0cbSSatish Balay         if (HT[idx] != key) {
420187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
421187ce0cbSSatish Balay           if (idx == size) {
422187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
423187ce0cbSSatish Balay             if (idx == h1) {
42477431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
425187ce0cbSSatish Balay             }
426187ce0cbSSatish Balay           }
427187ce0cbSSatish Balay         }
428187ce0cbSSatish Balay #else
429c2760754SSatish Balay         if (HT[idx] != key) {
430c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
431c2760754SSatish Balay           if (idx == size) {
432c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
433c2760754SSatish Balay             if (idx == h1) {
43477431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
435c2760754SSatish Balay             }
436c2760754SSatish Balay           }
437c2760754SSatish Balay         }
438187ce0cbSSatish Balay #endif
439c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
440c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
441c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4420bdbc534SSatish Balay       }
4430bdbc534SSatish Balay     } else {
4440bdbc534SSatish Balay       if (!baij->donotstash) {
445ff2fd236SBarry Smith         if (roworiented) {
446b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
447ff2fd236SBarry Smith         } else {
448b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
4490bdbc534SSatish Balay         }
4500bdbc534SSatish Balay       }
4510bdbc534SSatish Balay     }
4520bdbc534SSatish Balay   }
4532515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
454187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
455187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
456187ce0cbSSatish Balay #endif
4570bdbc534SSatish Balay   PetscFunctionReturn(0);
4580bdbc534SSatish Balay }
4590bdbc534SSatish Balay 
4604a2ae208SSatish Balay #undef __FUNCT__
46197e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
46297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4630bdbc534SSatish Balay {
4640bdbc534SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
465273d9f13SBarry Smith   PetscTruth        roworiented = baij->roworiented;
466dfbe8321SBarry Smith   PetscErrorCode    ierr;
467b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
468899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
469d0f46423SBarry Smith   PetscInt          rend=mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
470b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
471329f5518SBarry Smith   PetscReal         tmp;
4723eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
473dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
4742515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
475b24ad042SBarry Smith   PetscInt          total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4764a15367fSSatish Balay #endif
4770bdbc534SSatish Balay 
478d0a41580SSatish Balay   PetscFunctionBegin;
479d0a41580SSatish Balay 
4800bdbc534SSatish Balay   if (roworiented) {
4810bdbc534SSatish Balay     stepval = (n-1)*bs;
4820bdbc534SSatish Balay   } else {
4830bdbc534SSatish Balay     stepval = (m-1)*bs;
4840bdbc534SSatish Balay   }
4850bdbc534SSatish Balay   for (i=0; i<m; i++) {
4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
48777431f27SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
48877431f27SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
4890bdbc534SSatish Balay #endif
4900bdbc534SSatish Balay     row   = im[i];
491ab715e2cSSatish Balay     v_t   = v + i*nbs2;
492c2760754SSatish Balay     if (row >= rstart && row < rend) {
4930bdbc534SSatish Balay       for (j=0; j<n; j++) {
4940bdbc534SSatish Balay         col = in[j];
4950bdbc534SSatish Balay 
4960bdbc534SSatish Balay         /* Look up into the Hash Table */
497c2760754SSatish Balay         key = row*Nbs+col+1;
498c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4990bdbc534SSatish Balay 
500c2760754SSatish Balay         idx = h1;
5012515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
502187ce0cbSSatish Balay         total_ct++;
503187ce0cbSSatish Balay         insert_ct++;
504187ce0cbSSatish Balay        if (HT[idx] != key) {
505187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
506187ce0cbSSatish Balay           if (idx == size) {
507187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
508187ce0cbSSatish Balay             if (idx == h1) {
50977431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
510187ce0cbSSatish Balay             }
511187ce0cbSSatish Balay           }
512187ce0cbSSatish Balay         }
513187ce0cbSSatish Balay #else
514c2760754SSatish Balay         if (HT[idx] != key) {
515c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++);
516c2760754SSatish Balay           if (idx == size) {
517c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++);
518c2760754SSatish Balay             if (idx == h1) {
51977431f27SBarry Smith               SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
520c2760754SSatish Balay             }
521c2760754SSatish Balay           }
522c2760754SSatish Balay         }
523187ce0cbSSatish Balay #endif
524c2760754SSatish Balay         baij_a = HD[idx];
5250bdbc534SSatish Balay         if (roworiented) {
526c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
527187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
528187ce0cbSSatish Balay           value = v_t;
529187ce0cbSSatish Balay           v_t  += bs;
530fef45726SSatish Balay           if (addv == ADD_VALUES) {
531c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
532c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
533fef45726SSatish Balay                 baij_a[jj]  += *value++;
534b4cc0f5aSSatish Balay               }
535b4cc0f5aSSatish Balay             }
536fef45726SSatish Balay           } else {
537c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
538c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
539fef45726SSatish Balay                 baij_a[jj]  = *value++;
540fef45726SSatish Balay               }
541fef45726SSatish Balay             }
542fef45726SSatish Balay           }
5430bdbc534SSatish Balay         } else {
5440bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
545fef45726SSatish Balay           if (addv == ADD_VALUES) {
546b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
5470bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
548fef45726SSatish Balay                 baij_a[jj]  += *value++;
549fef45726SSatish Balay               }
550fef45726SSatish Balay             }
551fef45726SSatish Balay           } else {
552fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
553fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
554fef45726SSatish Balay                 baij_a[jj]  = *value++;
555fef45726SSatish Balay               }
556b4cc0f5aSSatish Balay             }
5570bdbc534SSatish Balay           }
5580bdbc534SSatish Balay         }
5590bdbc534SSatish Balay       }
5600bdbc534SSatish Balay     } else {
5610bdbc534SSatish Balay       if (!baij->donotstash) {
5620bdbc534SSatish Balay         if (roworiented) {
5638798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5640bdbc534SSatish Balay         } else {
5658798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
5660bdbc534SSatish Balay         }
5670bdbc534SSatish Balay       }
5680bdbc534SSatish Balay     }
5690bdbc534SSatish Balay   }
5702515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
571187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
572187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
573187ce0cbSSatish Balay #endif
5740bdbc534SSatish Balay   PetscFunctionReturn(0);
5750bdbc534SSatish Balay }
576133cdb44SSatish Balay 
5774a2ae208SSatish Balay #undef __FUNCT__
5784a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
579b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
580d6de1c52SSatish Balay {
581d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
5826849ba73SBarry Smith   PetscErrorCode ierr;
583d0f46423SBarry Smith   PetscInt       bs=mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
584d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
585d6de1c52SSatish Balay 
586133cdb44SSatish Balay   PetscFunctionBegin;
587d6de1c52SSatish Balay   for (i=0; i<m; i++) {
58897e567efSBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
589d0f46423SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
590d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
591d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
592d6de1c52SSatish Balay       for (j=0; j<n; j++) {
59397e567efSBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
594d0f46423SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
595d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
596d6de1c52SSatish Balay           col = idxn[j] - bscstart;
59798dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
598d64ed03dSBarry Smith         } else {
599905e6a2fSBarry Smith           if (!baij->colmap) {
600905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
601905e6a2fSBarry Smith           }
602aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
6030f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
604fa46199cSSatish Balay           data --;
60548e59246SSatish Balay #else
60648e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
60748e59246SSatish Balay #endif
60848e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
609d9d09a02SSatish Balay           else {
61048e59246SSatish Balay             col  = data + idxn[j]%bs;
61198dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
612d6de1c52SSatish Balay           }
613d6de1c52SSatish Balay         }
614d6de1c52SSatish Balay       }
615d64ed03dSBarry Smith     } else {
61629bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"Only local values currently supported");
617d6de1c52SSatish Balay     }
618d6de1c52SSatish Balay   }
6193a40ed3dSBarry Smith  PetscFunctionReturn(0);
620d6de1c52SSatish Balay }
621d6de1c52SSatish Balay 
6224a2ae208SSatish Balay #undef __FUNCT__
6234a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
624dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
625d6de1c52SSatish Balay {
626d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
627d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
628dfbe8321SBarry Smith   PetscErrorCode ierr;
629d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
630329f5518SBarry Smith   PetscReal      sum = 0.0;
6313eda8832SBarry Smith   MatScalar      *v;
632d6de1c52SSatish Balay 
633d64ed03dSBarry Smith   PetscFunctionBegin;
634d6de1c52SSatish Balay   if (baij->size == 1) {
635064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
636d6de1c52SSatish Balay   } else {
637d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
638d6de1c52SSatish Balay       v = amat->a;
6398a62d963SHong Zhang       nz = amat->nz*bs2;
6408a62d963SHong Zhang       for (i=0; i<nz; i++) {
641aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
642329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
643d6de1c52SSatish Balay #else
644d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
645d6de1c52SSatish Balay #endif
646d6de1c52SSatish Balay       }
647d6de1c52SSatish Balay       v = bmat->a;
6488a62d963SHong Zhang       nz = bmat->nz*bs2;
6498a62d963SHong Zhang       for (i=0; i<nz; i++) {
650aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
651329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
652d6de1c52SSatish Balay #else
653d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
654d6de1c52SSatish Balay #endif
655d6de1c52SSatish Balay       }
6567adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
657064f8208SBarry Smith       *nrm = sqrt(*nrm);
6588a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6598a62d963SHong Zhang       PetscReal *tmp,*tmp2;
660899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
661d0f46423SBarry Smith       ierr = PetscMalloc((2*mat->cmap->N+1)*sizeof(PetscReal),&tmp);CHKERRQ(ierr);
662d0f46423SBarry Smith       tmp2 = tmp + mat->cmap->N;
663d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
6648a62d963SHong Zhang       v = amat->a; jj = amat->j;
6658a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
6668a62d963SHong Zhang         for (j=0; j<bs; j++){
6678a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
6688a62d963SHong Zhang           for (row=0; row<bs; row++){
6698a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
6708a62d963SHong Zhang           }
6718a62d963SHong Zhang         }
6728a62d963SHong Zhang         jj++;
6738a62d963SHong Zhang       }
6748a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
6758a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
6768a62d963SHong Zhang         for (j=0; j<bs; j++){
6778a62d963SHong Zhang           col = bs*garray[*jj] + j;
6788a62d963SHong Zhang           for (row=0; row<bs; row++){
6798a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
6808a62d963SHong Zhang           }
6818a62d963SHong Zhang         }
6828a62d963SHong Zhang         jj++;
6838a62d963SHong Zhang       }
684d0f46423SBarry Smith       ierr = MPI_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPI_SUM,((PetscObject)mat)->comm);CHKERRQ(ierr);
6858a62d963SHong Zhang       *nrm = 0.0;
686d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
6878a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6888a62d963SHong Zhang       }
6898a62d963SHong Zhang       ierr = PetscFree(tmp);CHKERRQ(ierr);
6908a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
691577dd1f9SKris Buschelman       PetscReal *sums;
692577dd1f9SKris Buschelman       ierr = PetscMalloc(bs*sizeof(PetscReal),&sums);CHKERRQ(ierr)
6938a62d963SHong Zhang       sum = 0.0;
6948a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
6958a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
6968a62d963SHong Zhang         v = amat->a + bs2*amat->i[j];
6978a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
6988a62d963SHong Zhang         for (i=0; i<nz; i++) {
6998a62d963SHong Zhang           for (col=0; col<bs; col++){
7008a62d963SHong Zhang             for (row=0; row<bs; row++){
7018a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7028a62d963SHong Zhang             }
7038a62d963SHong Zhang           }
7048a62d963SHong Zhang         }
7058a62d963SHong Zhang         v = bmat->a + bs2*bmat->i[j];
7068a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7078a62d963SHong Zhang         for (i=0; i<nz; i++) {
7088a62d963SHong Zhang           for (col=0; col<bs; col++){
7098a62d963SHong Zhang             for (row=0; row<bs; row++){
7108a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7118a62d963SHong Zhang             }
7128a62d963SHong Zhang           }
7138a62d963SHong Zhang         }
7148a62d963SHong Zhang         for (row=0; row<bs; row++){
7158a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7168a62d963SHong Zhang         }
7178a62d963SHong Zhang       }
7187adad957SLisandro Dalcin       ierr = MPI_Allreduce(&sum,nrm,1,MPIU_REAL,MPI_MAX,((PetscObject)mat)->comm);CHKERRQ(ierr);
719577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
720d64ed03dSBarry Smith     } else {
72129bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"No support for this norm yet");
722d6de1c52SSatish Balay     }
723d64ed03dSBarry Smith   }
7243a40ed3dSBarry Smith   PetscFunctionReturn(0);
725d6de1c52SSatish Balay }
72657b952d6SSatish Balay 
727fef45726SSatish Balay /*
728fef45726SSatish Balay   Creates the hash table, and sets the table
729fef45726SSatish Balay   This table is created only once.
730fef45726SSatish Balay   If new entried need to be added to the matrix
731fef45726SSatish Balay   then the hash table has to be destroyed and
732fef45726SSatish Balay   recreated.
733fef45726SSatish Balay */
7344a2ae208SSatish Balay #undef __FUNCT__
7354a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
736dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
737596b8d2eSBarry Smith {
738596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
739596b8d2eSBarry Smith   Mat            A = baij->A,B=baij->B;
740596b8d2eSBarry Smith   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ *)A->data,*b=(Mat_SeqBAIJ *)B->data;
741b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
7426849ba73SBarry Smith   PetscErrorCode ierr;
743899cda47SBarry Smith   PetscInt       size,bs2=baij->bs2,rstart=baij->rstartbs;
744899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
745b24ad042SBarry Smith   PetscInt       *HT,key;
7463eda8832SBarry Smith   MatScalar      **HD;
747329f5518SBarry Smith   PetscReal      tmp;
7486cf91177SBarry Smith #if defined(PETSC_USE_INFO)
749b24ad042SBarry Smith   PetscInt       ct=0,max=0;
7504a15367fSSatish Balay #endif
751fef45726SSatish Balay 
752d64ed03dSBarry Smith   PetscFunctionBegin;
753b24ad042SBarry Smith   baij->ht_size=(PetscInt)(factor*nz);
7540bdbc534SSatish Balay   size = baij->ht_size;
755fef45726SSatish Balay 
7560bdbc534SSatish Balay   if (baij->ht) {
7570bdbc534SSatish Balay     PetscFunctionReturn(0);
758596b8d2eSBarry Smith   }
7590bdbc534SSatish Balay 
760fef45726SSatish Balay   /* Allocate Memory for Hash Table */
761b24ad042SBarry Smith   ierr     = PetscMalloc((size)*(sizeof(PetscInt)+sizeof(MatScalar*))+1,&baij->hd);CHKERRQ(ierr);
762b24ad042SBarry Smith   baij->ht = (PetscInt*)(baij->hd + size);
763b9e4cc15SSatish Balay   HD       = baij->hd;
764a07cd24cSSatish Balay   HT       = baij->ht;
765b9e4cc15SSatish Balay 
766b9e4cc15SSatish Balay 
767b24ad042SBarry Smith   ierr = PetscMemzero(HD,size*(sizeof(PetscInt)+sizeof(PetscScalar*)));CHKERRQ(ierr);
7680bdbc534SSatish Balay 
769596b8d2eSBarry Smith 
770596b8d2eSBarry Smith   /* Loop Over A */
7710bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
772596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
7730bdbc534SSatish Balay       row = i+rstart;
7740bdbc534SSatish Balay       col = aj[j]+cstart;
775596b8d2eSBarry Smith 
776187ce0cbSSatish Balay       key = row*Nbs + col + 1;
777c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7780bdbc534SSatish Balay       for (k=0; k<size; k++){
779958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
7800bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7810bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
782596b8d2eSBarry Smith           break;
7836cf91177SBarry Smith #if defined(PETSC_USE_INFO)
784187ce0cbSSatish Balay         } else {
785187ce0cbSSatish Balay           ct++;
786187ce0cbSSatish Balay #endif
787596b8d2eSBarry Smith         }
788187ce0cbSSatish Balay       }
7896cf91177SBarry Smith #if defined(PETSC_USE_INFO)
790187ce0cbSSatish Balay       if (k> max) max = k;
791187ce0cbSSatish Balay #endif
792596b8d2eSBarry Smith     }
793596b8d2eSBarry Smith   }
794596b8d2eSBarry Smith   /* Loop Over B */
7950bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
796596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
7970bdbc534SSatish Balay       row = i+rstart;
7980bdbc534SSatish Balay       col = garray[bj[j]];
799187ce0cbSSatish Balay       key = row*Nbs + col + 1;
800c2760754SSatish Balay       h1  = HASH(size,key,tmp);
8010bdbc534SSatish Balay       for (k=0; k<size; k++){
802958c9bccSBarry Smith         if (!HT[(h1+k)%size]) {
8030bdbc534SSatish Balay           HT[(h1+k)%size] = key;
8040bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
805596b8d2eSBarry Smith           break;
8066cf91177SBarry Smith #if defined(PETSC_USE_INFO)
807187ce0cbSSatish Balay         } else {
808187ce0cbSSatish Balay           ct++;
809187ce0cbSSatish Balay #endif
810596b8d2eSBarry Smith         }
811187ce0cbSSatish Balay       }
8126cf91177SBarry Smith #if defined(PETSC_USE_INFO)
813187ce0cbSSatish Balay       if (k> max) max = k;
814187ce0cbSSatish Balay #endif
815596b8d2eSBarry Smith     }
816596b8d2eSBarry Smith   }
817596b8d2eSBarry Smith 
818596b8d2eSBarry Smith   /* Print Summary */
8196cf91177SBarry Smith #if defined(PETSC_USE_INFO)
820c38d4ed2SBarry Smith   for (i=0,j=0; i<size; i++) {
821596b8d2eSBarry Smith     if (HT[i]) {j++;}
822c38d4ed2SBarry Smith   }
8231e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
824187ce0cbSSatish Balay #endif
8253a40ed3dSBarry Smith   PetscFunctionReturn(0);
826596b8d2eSBarry Smith }
82757b952d6SSatish Balay 
8284a2ae208SSatish Balay #undef __FUNCT__
8294a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
830dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
831bbb85fb3SSatish Balay {
832bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
833dfbe8321SBarry Smith   PetscErrorCode ierr;
834b24ad042SBarry Smith   PetscInt       nstash,reallocs;
835bbb85fb3SSatish Balay   InsertMode     addv;
836bbb85fb3SSatish Balay 
837bbb85fb3SSatish Balay   PetscFunctionBegin;
838bbb85fb3SSatish Balay   if (baij->donotstash) {
839bbb85fb3SSatish Balay     PetscFunctionReturn(0);
840bbb85fb3SSatish Balay   }
841bbb85fb3SSatish Balay 
842bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
8437adad957SLisandro Dalcin   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,((PetscObject)mat)->comm);CHKERRQ(ierr);
844bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
84529bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Some processors inserted others added");
846bbb85fb3SSatish Balay   }
847bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
848bbb85fb3SSatish Balay 
849d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8501e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
8518798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8521e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
85346680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
8541e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
855bbb85fb3SSatish Balay   PetscFunctionReturn(0);
856bbb85fb3SSatish Balay }
857bbb85fb3SSatish Balay 
8584a2ae208SSatish Balay #undef __FUNCT__
8594a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
860dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
861bbb85fb3SSatish Balay {
862bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
86391c97fd4SSatish Balay   Mat_SeqBAIJ    *a=(Mat_SeqBAIJ*)baij->A->data;
8646849ba73SBarry Smith   PetscErrorCode ierr;
865b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
866e44c0bd4SBarry Smith   PetscInt       *row,*col;
867e44c0bd4SBarry Smith   PetscTruth     r1,r2,r3,other_disassembled;
8683eda8832SBarry Smith   MatScalar      *val;
869bbb85fb3SSatish Balay   InsertMode     addv = mat->insertmode;
870b24ad042SBarry Smith   PetscMPIInt    n;
871bbb85fb3SSatish Balay 
87291c97fd4SSatish Balay   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
873bbb85fb3SSatish Balay   PetscFunctionBegin;
874bbb85fb3SSatish Balay   if (!baij->donotstash) {
875a2d1c673SSatish Balay     while (1) {
8768798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
877a2d1c673SSatish Balay       if (!flg) break;
878a2d1c673SSatish Balay 
879bbb85fb3SSatish Balay       for (i=0; i<n;) {
880bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
881bbb85fb3SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
882bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
883bbb85fb3SSatish Balay         else       ncols = n-i;
884bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
88597e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
886bbb85fb3SSatish Balay         i = j;
887bbb85fb3SSatish Balay       }
888bbb85fb3SSatish Balay     }
8898798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
890a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
891a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
892a2d1c673SSatish Balay        restore the original flags */
893a2d1c673SSatish Balay     r1 = baij->roworiented;
894a2d1c673SSatish Balay     r2 = a->roworiented;
89591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
8967c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8977c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
89891c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented    = PETSC_FALSE; /* b->roworiented */
899a2d1c673SSatish Balay     while (1) {
9008798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
901a2d1c673SSatish Balay       if (!flg) break;
902a2d1c673SSatish Balay 
903a2d1c673SSatish Balay       for (i=0; i<n;) {
904a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
905a2d1c673SSatish Balay         for (j=i,rstart=row[j]; j<n; j++) { if (row[j] != rstart) break; }
906a2d1c673SSatish Balay         if (j < n) ncols = j-i;
907a2d1c673SSatish Balay         else       ncols = n-i;
90897e5c40aSBarry Smith         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
909a2d1c673SSatish Balay         i = j;
910a2d1c673SSatish Balay       }
911a2d1c673SSatish Balay     }
9128798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
913a2d1c673SSatish Balay     baij->roworiented = r1;
914a2d1c673SSatish Balay     a->roworiented    = r2;
91591c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented    = r3; /* b->roworiented */
916bbb85fb3SSatish Balay   }
917bbb85fb3SSatish Balay 
918bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
919bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
920bbb85fb3SSatish Balay 
921bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
922bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
923bbb85fb3SSatish Balay   /*
924bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
925bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
926bbb85fb3SSatish Balay   */
927bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew)  {
9287adad957SLisandro Dalcin     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,((PetscObject)mat)->comm);CHKERRQ(ierr);
929bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
930bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
931bbb85fb3SSatish Balay     }
932bbb85fb3SSatish Balay   }
933bbb85fb3SSatish Balay 
934bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
935bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
936bbb85fb3SSatish Balay   }
93791c97fd4SSatish Balay   ((Mat_SeqBAIJ*)baij->B->data)->compressedrow.use = PETSC_TRUE; /* b->compressedrow.use */
938bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
939bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
940bbb85fb3SSatish Balay 
9416cf91177SBarry Smith #if defined(PETSC_USE_INFO)
942bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9431e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
944bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
945bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
946bbb85fb3SSatish Balay   }
947bbb85fb3SSatish Balay #endif
948bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
949bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
950bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
951bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
952bbb85fb3SSatish Balay   }
953bbb85fb3SSatish Balay 
954606d414cSSatish Balay   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
955606d414cSSatish Balay   baij->rowvalues = 0;
956bbb85fb3SSatish Balay   PetscFunctionReturn(0);
957bbb85fb3SSatish Balay }
95857b952d6SSatish Balay 
9594a2ae208SSatish Balay #undef __FUNCT__
9604a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9616849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
96257b952d6SSatish Balay {
96357b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
964dfbe8321SBarry Smith   PetscErrorCode    ierr;
965b24ad042SBarry Smith   PetscMPIInt       size = baij->size,rank = baij->rank;
966d0f46423SBarry Smith   PetscInt          bs = mat->rmap->bs;
96732077d6dSBarry Smith   PetscTruth        iascii,isdraw;
968b0a32e0cSBarry Smith   PetscViewer       sviewer;
969f3ef73ceSBarry Smith   PetscViewerFormat format;
97057b952d6SSatish Balay 
971d64ed03dSBarry Smith   PetscFunctionBegin;
97232077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
973fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
97432077d6dSBarry Smith   if (iascii) {
975b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
976456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9774e220ebcSLois Curfman McInnes       MatInfo info;
9787adad957SLisandro Dalcin       ierr = MPI_Comm_rank(((PetscObject)mat)->comm,&rank);CHKERRQ(ierr);
979d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
98077431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
981d0f46423SBarry Smith               rank,mat->rmap->N,(PetscInt)info.nz_used*bs,(PetscInt)info.nz_allocated*bs,
982d0f46423SBarry Smith               mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
983d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
98477431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
985d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
98677431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used*bs);CHKERRQ(ierr);
987b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
98807d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
98957b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9903a40ed3dSBarry Smith       PetscFunctionReturn(0);
991fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
99277431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
9933a40ed3dSBarry Smith       PetscFunctionReturn(0);
99404929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
99504929863SHong Zhang       PetscFunctionReturn(0);
99657b952d6SSatish Balay     }
99757b952d6SSatish Balay   }
99857b952d6SSatish Balay 
9990f5bd95cSBarry Smith   if (isdraw) {
1000b0a32e0cSBarry Smith     PetscDraw       draw;
100157b952d6SSatish Balay     PetscTruth isnull;
1002b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1003b0a32e0cSBarry Smith     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
100457b952d6SSatish Balay   }
100557b952d6SSatish Balay 
100657b952d6SSatish Balay   if (size == 1) {
10077adad957SLisandro Dalcin     ierr = PetscObjectSetName((PetscObject)baij->A,((PetscObject)mat)->name);CHKERRQ(ierr);
100857b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
1009d64ed03dSBarry Smith   } else {
101057b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
101157b952d6SSatish Balay     Mat         A;
101257b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1013d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10143eda8832SBarry Smith     MatScalar   *a;
101557b952d6SSatish Balay 
1016f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1017f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10187adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)mat)->comm,&A);CHKERRQ(ierr);
101957b952d6SSatish Balay     if (!rank) {
1020f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1021d64ed03dSBarry Smith     } else {
1022f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
102357b952d6SSatish Balay     }
1024f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
1025d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
102652e6d16bSBarry Smith     ierr = PetscLogObjectParent(mat,A);CHKERRQ(ierr);
102757b952d6SSatish Balay 
102857b952d6SSatish Balay     /* copy over the A part */
102957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
103057b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1031b24ad042SBarry Smith     ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
103257b952d6SSatish Balay 
103357b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1034899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
103557b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
103657b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1037899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
103857b952d6SSatish Balay         for (k=0; k<bs; k++) {
103997e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1040cee3aa6bSSatish Balay           col++; a += bs;
104157b952d6SSatish Balay         }
104257b952d6SSatish Balay       }
104357b952d6SSatish Balay     }
104457b952d6SSatish Balay     /* copy over the B part */
104557b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
104657b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
104757b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1048899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
104957b952d6SSatish Balay       for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
105057b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
105157b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
105257b952d6SSatish Balay         for (k=0; k<bs; k++) {
105397e5c40aSBarry Smith           ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1054cee3aa6bSSatish Balay           col++; a += bs;
105557b952d6SSatish Balay         }
105657b952d6SSatish Balay       }
105757b952d6SSatish Balay     }
1058606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10596d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10606d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
106155843e3eSBarry Smith     /*
106255843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1063b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
106455843e3eSBarry Smith     */
1065b0a32e0cSBarry Smith     ierr = PetscViewerGetSingleton(viewer,&sviewer);CHKERRQ(ierr);
1066f14a1c24SBarry Smith     if (!rank) {
10677adad957SLisandro Dalcin       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,((PetscObject)mat)->name);CHKERRQ(ierr);
10686831982aSBarry Smith       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
106957b952d6SSatish Balay     }
1070b0a32e0cSBarry Smith     ierr = PetscViewerRestoreSingleton(viewer,&sviewer);CHKERRQ(ierr);
107157b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
107257b952d6SSatish Balay   }
10733a40ed3dSBarry Smith   PetscFunctionReturn(0);
107457b952d6SSatish Balay }
107557b952d6SSatish Balay 
10764a2ae208SSatish Balay #undef __FUNCT__
10774a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1078dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
107957b952d6SSatish Balay {
1080dfbe8321SBarry Smith   PetscErrorCode ierr;
108132077d6dSBarry Smith   PetscTruth     iascii,isdraw,issocket,isbinary;
108257b952d6SSatish Balay 
1083d64ed03dSBarry Smith   PetscFunctionBegin;
108432077d6dSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr);
1085fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_DRAW,&isdraw);CHKERRQ(ierr);
1086b0a32e0cSBarry Smith   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_SOCKET,&issocket);CHKERRQ(ierr);
1087fb9695e5SSatish Balay   ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_BINARY,&isbinary);CHKERRQ(ierr);
108832077d6dSBarry Smith   if (iascii || isdraw || issocket || isbinary) {
10897b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
10905cd90555SBarry Smith   } else {
109179a5c55eSBarry Smith     SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported by MPIBAIJ matrices",((PetscObject)viewer)->type_name);
109257b952d6SSatish Balay   }
10933a40ed3dSBarry Smith   PetscFunctionReturn(0);
109457b952d6SSatish Balay }
109557b952d6SSatish Balay 
10964a2ae208SSatish Balay #undef __FUNCT__
10974a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1098dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
109979bdfe76SSatish Balay {
110079bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1101dfbe8321SBarry Smith   PetscErrorCode ierr;
110279bdfe76SSatish Balay 
1103d64ed03dSBarry Smith   PetscFunctionBegin;
1104aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1105d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
110679bdfe76SSatish Balay #endif
11078798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
11088798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
110979bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
111079bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1111aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
11129c666560SBarry Smith   if (baij->colmap) {ierr = PetscTableDestroy(baij->colmap);CHKERRQ(ierr);}
111348e59246SSatish Balay #else
111405b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
111548e59246SSatish Balay #endif
111605b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
1117606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1118606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
111905b42c5fSBarry Smith   ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
112005b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
112105b42c5fSBarry Smith   ierr = PetscFree(baij->hd);CHKERRQ(ierr);
1122899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1123606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
1124901853e0SKris Buschelman 
1125dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1126901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C","",PETSC_NULL);CHKERRQ(ierr);
1127901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C","",PETSC_NULL);CHKERRQ(ierr);
1128901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C","",PETSC_NULL);CHKERRQ(ierr);
1129901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C","",PETSC_NULL);CHKERRQ(ierr);
1130aac34f13SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C","",PETSC_NULL);CHKERRQ(ierr);
1131901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C","",PETSC_NULL);CHKERRQ(ierr);
1132901853e0SKris Buschelman   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C","",PETSC_NULL);CHKERRQ(ierr);
11333a40ed3dSBarry Smith   PetscFunctionReturn(0);
113479bdfe76SSatish Balay }
113579bdfe76SSatish Balay 
11364a2ae208SSatish Balay #undef __FUNCT__
11374a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1138dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1139cee3aa6bSSatish Balay {
1140cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1141dfbe8321SBarry Smith   PetscErrorCode ierr;
1142b24ad042SBarry Smith   PetscInt       nt;
1143cee3aa6bSSatish Balay 
1144d64ed03dSBarry Smith   PetscFunctionBegin;
1145e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1146d0f46423SBarry Smith   if (nt != A->cmap->n) {
114729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
114847b4a8eaSLois Curfman McInnes   }
1149e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1150d0f46423SBarry Smith   if (nt != A->rmap->n) {
115129bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
115247b4a8eaSLois Curfman McInnes   }
1153ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1154f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1155ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1156f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
11573a40ed3dSBarry Smith   PetscFunctionReturn(0);
1158cee3aa6bSSatish Balay }
1159cee3aa6bSSatish Balay 
11604a2ae208SSatish Balay #undef __FUNCT__
11614a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1162dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1163cee3aa6bSSatish Balay {
1164cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1165dfbe8321SBarry Smith   PetscErrorCode ierr;
1166d64ed03dSBarry Smith 
1167d64ed03dSBarry Smith   PetscFunctionBegin;
1168ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1169f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1170ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1171f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11723a40ed3dSBarry Smith   PetscFunctionReturn(0);
1173cee3aa6bSSatish Balay }
1174cee3aa6bSSatish Balay 
11754a2ae208SSatish Balay #undef __FUNCT__
11764a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1177dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1178cee3aa6bSSatish Balay {
1179cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1180dfbe8321SBarry Smith   PetscErrorCode ierr;
1181a5ff213dSBarry Smith   PetscTruth     merged;
1182cee3aa6bSSatish Balay 
1183d64ed03dSBarry Smith   PetscFunctionBegin;
1184a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1185cee3aa6bSSatish Balay   /* do nondiagonal part */
11867c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1187a5ff213dSBarry Smith   if (!merged) {
1188cee3aa6bSSatish Balay     /* send it on its way */
1189ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1190cee3aa6bSSatish Balay     /* do local part */
11917c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1192cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1193a5ff213dSBarry Smith     /* inserted in yy until the next line */
1194ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1195a5ff213dSBarry Smith   } else {
1196a5ff213dSBarry Smith     /* do local part */
1197a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1198a5ff213dSBarry Smith     /* send it on its way */
1199ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1200a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1201ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1202a5ff213dSBarry Smith   }
12033a40ed3dSBarry Smith   PetscFunctionReturn(0);
1204cee3aa6bSSatish Balay }
1205cee3aa6bSSatish Balay 
12064a2ae208SSatish Balay #undef __FUNCT__
12074a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1208dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1209cee3aa6bSSatish Balay {
1210cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1211dfbe8321SBarry Smith   PetscErrorCode ierr;
1212cee3aa6bSSatish Balay 
1213d64ed03dSBarry Smith   PetscFunctionBegin;
1214cee3aa6bSSatish Balay   /* do nondiagonal part */
12157c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1216cee3aa6bSSatish Balay   /* send it on its way */
1217ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1218cee3aa6bSSatish Balay   /* do local part */
12197c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1220cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1221cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1222cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1223ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
12243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1225cee3aa6bSSatish Balay }
1226cee3aa6bSSatish Balay 
1227cee3aa6bSSatish Balay /*
1228cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1229cee3aa6bSSatish Balay    diagonal block
1230cee3aa6bSSatish Balay */
12314a2ae208SSatish Balay #undef __FUNCT__
12324a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1233dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1234cee3aa6bSSatish Balay {
1235cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1236dfbe8321SBarry Smith   PetscErrorCode ierr;
1237d64ed03dSBarry Smith 
1238d64ed03dSBarry Smith   PetscFunctionBegin;
1239d0f46423SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
12403a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12413a40ed3dSBarry Smith   PetscFunctionReturn(0);
1242cee3aa6bSSatish Balay }
1243cee3aa6bSSatish Balay 
12444a2ae208SSatish Balay #undef __FUNCT__
12454a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1246f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1247cee3aa6bSSatish Balay {
1248cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1249dfbe8321SBarry Smith   PetscErrorCode ierr;
1250d64ed03dSBarry Smith 
1251d64ed03dSBarry Smith   PetscFunctionBegin;
1252f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1253f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
12543a40ed3dSBarry Smith   PetscFunctionReturn(0);
1255cee3aa6bSSatish Balay }
1256026e39d0SSatish Balay 
12574a2ae208SSatish Balay #undef __FUNCT__
12584a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1259b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1260acdf5bf4SSatish Balay {
1261acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
126287828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
12636849ba73SBarry Smith   PetscErrorCode ierr;
1264d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1265d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1266899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1267acdf5bf4SSatish Balay 
1268d64ed03dSBarry Smith   PetscFunctionBegin;
1269abc0a331SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Already active");
1270acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1271acdf5bf4SSatish Balay 
1272acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1273acdf5bf4SSatish Balay     /*
1274acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1275acdf5bf4SSatish Balay     */
1276acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1277b24ad042SBarry Smith     PetscInt     max = 1,mbs = mat->mbs,tmp;
1278bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1279acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1280acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1281acdf5bf4SSatish Balay     }
1282b24ad042SBarry Smith     ierr = PetscMalloc(max*bs2*(sizeof(PetscInt)+sizeof(PetscScalar)),&mat->rowvalues);CHKERRQ(ierr);
1283b24ad042SBarry Smith     mat->rowindices = (PetscInt*)(mat->rowvalues + max*bs2);
1284acdf5bf4SSatish Balay   }
1285acdf5bf4SSatish Balay 
128629bbc08cSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,"Only local rows")
1287d9d09a02SSatish Balay   lrow = row - brstart;
1288acdf5bf4SSatish Balay 
1289acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1290acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1291acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1292f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1293f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1294acdf5bf4SSatish Balay   nztot = nzA + nzB;
1295acdf5bf4SSatish Balay 
1296acdf5bf4SSatish Balay   cmap  = mat->garray;
1297acdf5bf4SSatish Balay   if (v  || idx) {
1298acdf5bf4SSatish Balay     if (nztot) {
1299acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1300b24ad042SBarry Smith       PetscInt imark = -1;
1301acdf5bf4SSatish Balay       if (v) {
1302acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1303acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1304d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1305acdf5bf4SSatish Balay           else break;
1306acdf5bf4SSatish Balay         }
1307acdf5bf4SSatish Balay         imark = i;
1308acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1309acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1310acdf5bf4SSatish Balay       }
1311acdf5bf4SSatish Balay       if (idx) {
1312acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1313acdf5bf4SSatish Balay         if (imark > -1) {
1314acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1315bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1316acdf5bf4SSatish Balay           }
1317acdf5bf4SSatish Balay         } else {
1318acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
1319d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1320d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1321acdf5bf4SSatish Balay             else break;
1322acdf5bf4SSatish Balay           }
1323acdf5bf4SSatish Balay           imark = i;
1324acdf5bf4SSatish Balay         }
1325d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1326d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1327acdf5bf4SSatish Balay       }
1328d64ed03dSBarry Smith     } else {
1329d212a18eSSatish Balay       if (idx) *idx = 0;
1330d212a18eSSatish Balay       if (v)   *v   = 0;
1331d212a18eSSatish Balay     }
1332acdf5bf4SSatish Balay   }
1333acdf5bf4SSatish Balay   *nz = nztot;
1334f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1335f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13363a40ed3dSBarry Smith   PetscFunctionReturn(0);
1337acdf5bf4SSatish Balay }
1338acdf5bf4SSatish Balay 
13394a2ae208SSatish Balay #undef __FUNCT__
13404a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1341b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1342acdf5bf4SSatish Balay {
1343acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1344d64ed03dSBarry Smith 
1345d64ed03dSBarry Smith   PetscFunctionBegin;
1346abc0a331SBarry Smith   if (!baij->getrowactive) {
134729bbc08cSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1348acdf5bf4SSatish Balay   }
1349acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13503a40ed3dSBarry Smith   PetscFunctionReturn(0);
1351acdf5bf4SSatish Balay }
1352acdf5bf4SSatish Balay 
13534a2ae208SSatish Balay #undef __FUNCT__
13544a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1355dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
135658667388SSatish Balay {
135758667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1358dfbe8321SBarry Smith   PetscErrorCode ierr;
1359d64ed03dSBarry Smith 
1360d64ed03dSBarry Smith   PetscFunctionBegin;
136158667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
136258667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13633a40ed3dSBarry Smith   PetscFunctionReturn(0);
136458667388SSatish Balay }
13650ac07820SSatish Balay 
13664a2ae208SSatish Balay #undef __FUNCT__
13674a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1368dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13690ac07820SSatish Balay {
13704e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
13714e220ebcSLois Curfman McInnes   Mat            A = a->A,B = a->B;
1372dfbe8321SBarry Smith   PetscErrorCode ierr;
1373329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
13740ac07820SSatish Balay 
1375d64ed03dSBarry Smith   PetscFunctionBegin;
1376d0f46423SBarry Smith   info->block_size     = (PetscReal)matin->rmap->bs;
13774e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13780e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1379de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13804e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13810e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1382de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13830ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13844e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13854e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
13864e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
13874e220ebcSLois Curfman McInnes     info->memory       = isend[3];
13884e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
13890ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
13907adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_MAX,((PetscObject)matin)->comm);CHKERRQ(ierr);
13914e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13924e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
13934e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
13944e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
13954e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
13960ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
13977adad957SLisandro Dalcin     ierr = MPI_Allreduce(isend,irecv,5,MPIU_REAL,MPI_SUM,((PetscObject)matin)->comm);CHKERRQ(ierr);
13984e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
13994e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14004e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14014e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14024e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1403d41123aaSBarry Smith   } else {
140477431f27SBarry Smith     SETERRQ1(PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
14050ac07820SSatish Balay   }
14064e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14074e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14084e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14093a40ed3dSBarry Smith   PetscFunctionReturn(0);
14100ac07820SSatish Balay }
14110ac07820SSatish Balay 
14124a2ae208SSatish Balay #undef __FUNCT__
14134a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
14144e0d8c25SBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscTruth flg)
141558667388SSatish Balay {
141658667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1417dfbe8321SBarry Smith   PetscErrorCode ierr;
141858667388SSatish Balay 
1419d64ed03dSBarry Smith   PetscFunctionBegin;
142012c028f9SKris Buschelman   switch (op) {
1421512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
142212c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
142328b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1424a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
142512c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
14264e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14274e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
142812c028f9SKris Buschelman     break;
142912c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
14304e0d8c25SBarry Smith     a->roworiented = flg;
14314e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
14324e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
143312c028f9SKris Buschelman     break;
14344e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1435290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
143612c028f9SKris Buschelman     break;
143712c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
14384e0d8c25SBarry Smith     a->donotstash = flg;
143912c028f9SKris Buschelman     break;
144012c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14414e0d8c25SBarry Smith     a->ht_flag = flg;
144212c028f9SKris Buschelman     break;
144377e54ba9SKris Buschelman   case MAT_SYMMETRIC:
144477e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14452188ac68SBarry Smith   case MAT_HERMITIAN:
14462188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
14474e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
144877e54ba9SKris Buschelman     break;
144912c028f9SKris Buschelman   default:
1450ad86a440SBarry Smith     SETERRQ1(PETSC_ERR_SUP,"unknown option %d",op);
1451d64ed03dSBarry Smith   }
14523a40ed3dSBarry Smith   PetscFunctionReturn(0);
145358667388SSatish Balay }
145458667388SSatish Balay 
14554a2ae208SSatish Balay #undef __FUNCT__
14564a2ae208SSatish Balay #define __FUNCT__ "MatTranspose_MPIBAIJ("
1457fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
14580ac07820SSatish Balay {
14590ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
14600ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
14610ac07820SSatish Balay   Mat            B;
1462dfbe8321SBarry Smith   PetscErrorCode ierr;
1463d0f46423SBarry Smith   PetscInt       M=A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1464d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
14653eda8832SBarry Smith   MatScalar      *a;
14660ac07820SSatish Balay 
1467d64ed03dSBarry Smith   PetscFunctionBegin;
1468e9695a30SBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1469fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
14707adad957SLisandro Dalcin     ierr = MatCreate(((PetscObject)A)->comm,&B);CHKERRQ(ierr);
1471d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
14727adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
1473d0f46423SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,0,PETSC_NULL,0,PETSC_NULL);CHKERRQ(ierr);
1474fc4dec0aSBarry Smith   } else {
1475fc4dec0aSBarry Smith     B = *matout;
1476fc4dec0aSBarry Smith   }
14770ac07820SSatish Balay 
14780ac07820SSatish Balay   /* copy over the A part */
14790ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
14800ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1481b24ad042SBarry Smith   ierr = PetscMalloc(bs*sizeof(PetscInt),&rvals);CHKERRQ(ierr);
14820ac07820SSatish Balay 
14830ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1484899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14850ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
14860ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1487899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
14880ac07820SSatish Balay       for (k=0; k<bs; k++) {
148997e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
14900ac07820SSatish Balay         col++; a += bs;
14910ac07820SSatish Balay       }
14920ac07820SSatish Balay     }
14930ac07820SSatish Balay   }
14940ac07820SSatish Balay   /* copy over the B part */
14950ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
14960ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14970ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1498899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
14990ac07820SSatish Balay     for (j=1; j<bs; j++) { rvals[j] = rvals[j-1] + 1; }
15000ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
15010ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15020ac07820SSatish Balay       for (k=0; k<bs; k++) {
150397e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15040ac07820SSatish Balay         col++; a += bs;
15050ac07820SSatish Balay       }
15060ac07820SSatish Balay     }
15070ac07820SSatish Balay   }
1508606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15090ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15100ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15110ac07820SSatish Balay 
1512815cbec1SBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout != A) {
15130ac07820SSatish Balay     *matout = B;
15140ac07820SSatish Balay   } else {
1515273d9f13SBarry Smith     ierr = MatHeaderCopy(A,B);CHKERRQ(ierr);
15160ac07820SSatish Balay   }
15173a40ed3dSBarry Smith   PetscFunctionReturn(0);
15180ac07820SSatish Balay }
15190e95ebc0SSatish Balay 
15204a2ae208SSatish Balay #undef __FUNCT__
15214a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1522dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15230e95ebc0SSatish Balay {
152436c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
152536c4a09eSSatish Balay   Mat            a = baij->A,b = baij->B;
1526dfbe8321SBarry Smith   PetscErrorCode ierr;
1527b24ad042SBarry Smith   PetscInt       s1,s2,s3;
15280e95ebc0SSatish Balay 
1529d64ed03dSBarry Smith   PetscFunctionBegin;
153036c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
153136c4a09eSSatish Balay   if (rr) {
153236c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
153329bbc08cSBarry Smith     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
153436c4a09eSSatish Balay     /* Overlap communication with computation. */
1535ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
153636c4a09eSSatish Balay   }
15370e95ebc0SSatish Balay   if (ll) {
15380e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
153929bbc08cSBarry Smith     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
1540a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,PETSC_NULL);CHKERRQ(ierr);
15410e95ebc0SSatish Balay   }
154236c4a09eSSatish Balay   /* scale  the diagonal block */
154336c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
154436c4a09eSSatish Balay 
154536c4a09eSSatish Balay   if (rr) {
154636c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1547ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1548a21fb8cbSBarry Smith     ierr = (*b->ops->diagonalscale)(b,PETSC_NULL,baij->lvec);CHKERRQ(ierr);
154936c4a09eSSatish Balay   }
155036c4a09eSSatish Balay 
15513a40ed3dSBarry Smith   PetscFunctionReturn(0);
15520e95ebc0SSatish Balay }
15530e95ebc0SSatish Balay 
15544a2ae208SSatish Balay #undef __FUNCT__
15554a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
1556f4df32b1SMatthew Knepley PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag)
15570ac07820SSatish Balay {
15580ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
15596849ba73SBarry Smith   PetscErrorCode ierr;
1560b24ad042SBarry Smith   PetscMPIInt    imdex,size = l->size,n,rank = l->rank;
1561d0f46423SBarry Smith   PetscInt       i,*owners = A->rmap->range;
1562b24ad042SBarry Smith   PetscInt       *nprocs,j,idx,nsends,row;
1563b24ad042SBarry Smith   PetscInt       nmax,*svalues,*starts,*owner,nrecvs;
15647adad957SLisandro Dalcin   PetscInt       *rvalues,tag = ((PetscObject)A)->tag,count,base,slen,*source,lastidx = -1;
1565d0f46423SBarry Smith   PetscInt       *lens,*lrows,*values,rstart_bs=A->rmap->rstart;
15667adad957SLisandro Dalcin   MPI_Comm       comm = ((PetscObject)A)->comm;
15670ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
15680ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
15696543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15706543fbbaSBarry Smith   PetscTruth     found = PETSC_FALSE;
15716543fbbaSBarry Smith #endif
15720ac07820SSatish Balay 
1573d64ed03dSBarry Smith   PetscFunctionBegin;
15740ac07820SSatish Balay   /*  first count number of contributors to each processor */
1575b24ad042SBarry Smith   ierr  = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr);
1576b24ad042SBarry Smith   ierr  = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr);
1577b24ad042SBarry Smith   ierr  = PetscMalloc((N+1)*sizeof(PetscInt),&owner);CHKERRQ(ierr); /* see note*/
15786543fbbaSBarry Smith   j = 0;
15790ac07820SSatish Balay   for (i=0; i<N; i++) {
15806543fbbaSBarry Smith     if (lastidx > (idx = rows[i])) j = 0;
15816543fbbaSBarry Smith     lastidx = idx;
15826543fbbaSBarry Smith     for (; j<size; j++) {
1583357c27ecSBarry Smith       if (idx >= owners[j] && idx < owners[j+1]) {
15846543fbbaSBarry Smith         nprocs[2*j]++;
15856543fbbaSBarry Smith         nprocs[2*j+1] = 1;
15866543fbbaSBarry Smith         owner[i] = j;
15876543fbbaSBarry Smith #if defined(PETSC_DEBUG)
15886543fbbaSBarry Smith         found = PETSC_TRUE;
15896543fbbaSBarry Smith #endif
15906543fbbaSBarry Smith         break;
15910ac07820SSatish Balay       }
15920ac07820SSatish Balay     }
15936543fbbaSBarry Smith #if defined(PETSC_DEBUG)
159429bbc08cSBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Index out of range");
15956543fbbaSBarry Smith     found = PETSC_FALSE;
15966543fbbaSBarry Smith #endif
15970ac07820SSatish Balay   }
1598c1dc657dSBarry Smith   nsends = 0;  for (i=0; i<size; i++) { nsends += nprocs[2*i+1];}
15990ac07820SSatish Balay 
16000ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
1601c1dc657dSBarry Smith   ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr);
16020ac07820SSatish Balay 
16030ac07820SSatish Balay   /* post receives:   */
1604b24ad042SBarry Smith   ierr = PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(PetscInt),&rvalues);CHKERRQ(ierr);
1605b0a32e0cSBarry Smith   ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr);
16060ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
1607b24ad042SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPIU_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16080ac07820SSatish Balay   }
16090ac07820SSatish Balay 
16100ac07820SSatish Balay   /* do sends:
16110ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16120ac07820SSatish Balay      the ith processor
16130ac07820SSatish Balay   */
1614b24ad042SBarry Smith   ierr = PetscMalloc((N+1)*sizeof(PetscInt),&svalues);CHKERRQ(ierr);
1615b0a32e0cSBarry Smith   ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr);
1616b24ad042SBarry Smith   ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr);
16170ac07820SSatish Balay   starts[0]  = 0;
1618c1dc657dSBarry Smith   for (i=1; i<size; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16190ac07820SSatish Balay   for (i=0; i<N; i++) {
16200ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16210ac07820SSatish Balay   }
16220ac07820SSatish Balay 
16230ac07820SSatish Balay   starts[0] = 0;
1624c1dc657dSBarry Smith   for (i=1; i<size+1; i++) { starts[i] = starts[i-1] + nprocs[2*i-2];}
16250ac07820SSatish Balay   count = 0;
16260ac07820SSatish Balay   for (i=0; i<size; i++) {
1627c1dc657dSBarry Smith     if (nprocs[2*i+1]) {
1628b24ad042SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[2*i],MPIU_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16290ac07820SSatish Balay     }
16300ac07820SSatish Balay   }
1631606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16320ac07820SSatish Balay 
1633357c27ecSBarry Smith   base = owners[rank];
16340ac07820SSatish Balay 
16350ac07820SSatish Balay   /*  wait on receives */
1636b24ad042SBarry Smith   ierr   = PetscMalloc(2*(nrecvs+1)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
16370ac07820SSatish Balay   source = lens + nrecvs;
16380ac07820SSatish Balay   count  = nrecvs; slen = 0;
16390ac07820SSatish Balay   while (count) {
1640ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16410ac07820SSatish Balay     /* unpack receives into our local space */
1642b24ad042SBarry Smith     ierr = MPI_Get_count(&recv_status,MPIU_INT,&n);CHKERRQ(ierr);
16430ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16440ac07820SSatish Balay     lens[imdex]    = n;
16450ac07820SSatish Balay     slen          += n;
16460ac07820SSatish Balay     count--;
16470ac07820SSatish Balay   }
1648606d414cSSatish Balay   ierr = PetscFree(recv_waits);CHKERRQ(ierr);
16490ac07820SSatish Balay 
16500ac07820SSatish Balay   /* move the data into the send scatter */
1651b24ad042SBarry Smith   ierr = PetscMalloc((slen+1)*sizeof(PetscInt),&lrows);CHKERRQ(ierr);
16520ac07820SSatish Balay   count = 0;
16530ac07820SSatish Balay   for (i=0; i<nrecvs; i++) {
16540ac07820SSatish Balay     values = rvalues + i*nmax;
16550ac07820SSatish Balay     for (j=0; j<lens[i]; j++) {
16560ac07820SSatish Balay       lrows[count++] = values[j] - base;
16570ac07820SSatish Balay     }
16580ac07820SSatish Balay   }
1659606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1660606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1661606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1662606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16630ac07820SSatish Balay 
16640ac07820SSatish Balay   /* actually zap the local rows */
166572dacd9aSBarry Smith   /*
166672dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1667a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
166872dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
166972dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
167072dacd9aSBarry Smith 
167172dacd9aSBarry Smith   */
16729c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1673f4df32b1SMatthew Knepley   ierr = MatZeroRows_SeqBAIJ(l->B,slen,lrows,0.0);CHKERRQ(ierr);
1674d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1675f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,diag);CHKERRQ(ierr);
1676f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
1677f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1678fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
167929bbc08cSBarry Smith       SETERRQ(PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1680512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
16816525c446SSatish Balay     }
1682a07cd24cSSatish Balay     for (i=0; i<slen; i++) {
1683a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1684f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1685a07cd24cSSatish Balay     }
1686a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1687a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
16889c957beeSSatish Balay   } else {
1689f4df32b1SMatthew Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,slen,lrows,0.0);CHKERRQ(ierr);
1690a07cd24cSSatish Balay   }
16919c957beeSSatish Balay 
1692606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1693a07cd24cSSatish Balay 
16940ac07820SSatish Balay   /* wait on sends */
16950ac07820SSatish Balay   if (nsends) {
169682502324SSatish Balay     ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr);
1697ca161407SBarry Smith     ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1698606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
16990ac07820SSatish Balay   }
1700606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1701606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
17020ac07820SSatish Balay 
17033a40ed3dSBarry Smith   PetscFunctionReturn(0);
17040ac07820SSatish Balay }
170572dacd9aSBarry Smith 
17064a2ae208SSatish Balay #undef __FUNCT__
17074a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
1708dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
1709bb5a7306SBarry Smith {
1710bb5a7306SBarry Smith   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1711dfbe8321SBarry Smith   PetscErrorCode ierr;
1712d64ed03dSBarry Smith 
1713d64ed03dSBarry Smith   PetscFunctionBegin;
1714bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17153a40ed3dSBarry Smith   PetscFunctionReturn(0);
1716bb5a7306SBarry Smith }
1717bb5a7306SBarry Smith 
17186849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17190ac07820SSatish Balay 
17204a2ae208SSatish Balay #undef __FUNCT__
17214a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
1722dfbe8321SBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscTruth *flag)
17237fc3c18eSBarry Smith {
17247fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
17257fc3c18eSBarry Smith   Mat            a,b,c,d;
17267fc3c18eSBarry Smith   PetscTruth     flg;
1727dfbe8321SBarry Smith   PetscErrorCode ierr;
17287fc3c18eSBarry Smith 
17297fc3c18eSBarry Smith   PetscFunctionBegin;
17307fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17317fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17327fc3c18eSBarry Smith 
17337fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
1734abc0a331SBarry Smith   if (flg) {
17357fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
17367fc3c18eSBarry Smith   }
17377adad957SLisandro Dalcin   ierr = MPI_Allreduce(&flg,flag,1,MPI_INT,MPI_LAND,((PetscObject)A)->comm);CHKERRQ(ierr);
17387fc3c18eSBarry Smith   PetscFunctionReturn(0);
17397fc3c18eSBarry Smith }
17407fc3c18eSBarry Smith 
17413c896bc6SHong Zhang #undef __FUNCT__
17423c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
17433c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
17443c896bc6SHong Zhang {
17453c896bc6SHong Zhang   PetscErrorCode ierr;
17463c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
17473c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
17483c896bc6SHong Zhang 
17493c896bc6SHong Zhang   PetscFunctionBegin;
17503c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17513c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17523c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
17533c896bc6SHong Zhang   } else {
17543c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
17553c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
17563c896bc6SHong Zhang   }
17573c896bc6SHong Zhang   PetscFunctionReturn(0);
17583c896bc6SHong Zhang }
1759273d9f13SBarry Smith 
17604a2ae208SSatish Balay #undef __FUNCT__
17614a2ae208SSatish Balay #define __FUNCT__ "MatSetUpPreallocation_MPIBAIJ"
1762dfbe8321SBarry Smith PetscErrorCode MatSetUpPreallocation_MPIBAIJ(Mat A)
1763273d9f13SBarry Smith {
1764dfbe8321SBarry Smith   PetscErrorCode ierr;
1765273d9f13SBarry Smith 
1766273d9f13SBarry Smith   PetscFunctionBegin;
1767db4efbfdSBarry Smith   ierr =  MatMPIBAIJSetPreallocation(A,-PetscMax(A->rmap->bs,1),PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
1768273d9f13SBarry Smith   PetscFunctionReturn(0);
1769273d9f13SBarry Smith }
1770273d9f13SBarry Smith 
17714fe895cdSHong Zhang #include "petscblaslapack.h"
17724fe895cdSHong Zhang #undef __FUNCT__
17734fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
17744fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
17754fe895cdSHong Zhang {
17764fe895cdSHong Zhang   PetscErrorCode ierr;
17774fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ *)X->data,*yy=(Mat_MPIBAIJ *)Y->data;
17784fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
17794fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
17804fe895cdSHong Zhang 
17814fe895cdSHong Zhang   PetscFunctionBegin;
17824fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17834fe895cdSHong Zhang     PetscScalar alpha = a;
17844fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->A->data;
17854fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->A->data;
17860805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17874fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17884fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17894fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17900805154bSBarry Smith     bnz = PetscBLASIntCast(x->nz);
17914fe895cdSHong Zhang     BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one);
17924fe895cdSHong Zhang   } else {
17934fe895cdSHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
17944fe895cdSHong Zhang   }
17954fe895cdSHong Zhang   PetscFunctionReturn(0);
17964fe895cdSHong Zhang }
17974fe895cdSHong Zhang 
179899cafbc1SBarry Smith #undef __FUNCT__
1799*41c166b1SJed Brown #define __FUNCT__ "MatSetBlockSize_MPIBAIJ"
1800*41c166b1SJed Brown PetscErrorCode MatSetBlockSize_MPIBAIJ(Mat A,PetscInt bs)
1801*41c166b1SJed Brown {
1802*41c166b1SJed Brown   Mat_MPIBAIJ    *a   = (Mat_MPIBAIJ*)A->data;
1803*41c166b1SJed Brown   PetscErrorCode ierr;
1804*41c166b1SJed Brown 
1805*41c166b1SJed Brown   PetscFunctionBegin;
1806*41c166b1SJed Brown   ierr = MatSetBlockSize(a->A,bs);CHKERRQ(ierr);
1807*41c166b1SJed Brown   ierr = MatSetBlockSize(a->B,bs);CHKERRQ(ierr);
1808*41c166b1SJed Brown   PetscFunctionReturn(0);
1809*41c166b1SJed Brown }
1810*41c166b1SJed Brown 
1811*41c166b1SJed Brown #undef __FUNCT__
181299cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
181399cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
181499cafbc1SBarry Smith {
181599cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
181699cafbc1SBarry Smith   PetscErrorCode ierr;
181799cafbc1SBarry Smith 
181899cafbc1SBarry Smith   PetscFunctionBegin;
181999cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
182099cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
182199cafbc1SBarry Smith   PetscFunctionReturn(0);
182299cafbc1SBarry Smith }
182399cafbc1SBarry Smith 
182499cafbc1SBarry Smith #undef __FUNCT__
182599cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
182699cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
182799cafbc1SBarry Smith {
182899cafbc1SBarry Smith   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ*)A->data;
182999cafbc1SBarry Smith   PetscErrorCode ierr;
183099cafbc1SBarry Smith 
183199cafbc1SBarry Smith   PetscFunctionBegin;
183299cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
183399cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
183499cafbc1SBarry Smith   PetscFunctionReturn(0);
183599cafbc1SBarry Smith }
183699cafbc1SBarry Smith 
183782094794SBarry Smith #undef __FUNCT__
183882094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
18394aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
18404aa3045dSJed Brown {
18414aa3045dSJed Brown   PetscErrorCode ierr;
18424aa3045dSJed Brown   IS             iscol_local;
18434aa3045dSJed Brown   PetscInt       csize;
18444aa3045dSJed Brown 
18454aa3045dSJed Brown   PetscFunctionBegin;
18464aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
1847b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
1848b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
1849b79d0421SJed Brown     if (!iscol_local) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
1850b79d0421SJed Brown   } else {
18514aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
1852b79d0421SJed Brown   }
18534aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
1854b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
1855b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
18564aa3045dSJed Brown     ierr = ISDestroy(iscol_local);CHKERRQ(ierr);
1857b79d0421SJed Brown   }
18584aa3045dSJed Brown   PetscFunctionReturn(0);
18594aa3045dSJed Brown }
18604aa3045dSJed Brown 
18614aa3045dSJed Brown #undef __FUNCT__
18624aa3045dSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
186382094794SBarry Smith /*
186482094794SBarry Smith     Not great since it makes two copies of the submatrix, first an SeqBAIJ
186582094794SBarry Smith   in local and then by concatenating the local matrices the end result.
186682094794SBarry Smith   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ()
186782094794SBarry Smith */
18684aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
186982094794SBarry Smith {
187082094794SBarry Smith   PetscErrorCode ierr;
187182094794SBarry Smith   PetscMPIInt    rank,size;
187282094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
187382094794SBarry Smith   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal;
187482094794SBarry Smith   Mat            *local,M,Mreuse;
187582094794SBarry Smith   MatScalar      *vwork,*aa;
187682094794SBarry Smith   MPI_Comm       comm = ((PetscObject)mat)->comm;
187782094794SBarry Smith   Mat_SeqBAIJ    *aij;
187882094794SBarry Smith 
187982094794SBarry Smith 
188082094794SBarry Smith   PetscFunctionBegin;
188182094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
188282094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
188382094794SBarry Smith 
188482094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
188582094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject *)&Mreuse);CHKERRQ(ierr);
188682094794SBarry Smith     if (!Mreuse) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
188782094794SBarry Smith     local = &Mreuse;
188882094794SBarry Smith     ierr  = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_REUSE_MATRIX,&local);CHKERRQ(ierr);
188982094794SBarry Smith   } else {
189082094794SBarry Smith     ierr   = MatGetSubMatrices(mat,1,&isrow,&iscol,MAT_INITIAL_MATRIX,&local);CHKERRQ(ierr);
189182094794SBarry Smith     Mreuse = *local;
189282094794SBarry Smith     ierr   = PetscFree(local);CHKERRQ(ierr);
189382094794SBarry Smith   }
189482094794SBarry Smith 
189582094794SBarry Smith   /*
189682094794SBarry Smith       m - number of local rows
189782094794SBarry Smith       n - number of columns (same on all processors)
189882094794SBarry Smith       rstart - first row in new global matrix generated
189982094794SBarry Smith   */
190082094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
190182094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
190282094794SBarry Smith   m    = m/bs;
190382094794SBarry Smith   n    = n/bs;
190482094794SBarry Smith 
190582094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
190682094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
190782094794SBarry Smith     ii  = aij->i;
190882094794SBarry Smith     jj  = aij->j;
190982094794SBarry Smith 
191082094794SBarry Smith     /*
191182094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
191282094794SBarry Smith         portions of the matrix in order to do correct preallocation
191382094794SBarry Smith     */
191482094794SBarry Smith 
191582094794SBarry Smith     /* first get start and end of "diagonal" columns */
191682094794SBarry Smith     if (csize == PETSC_DECIDE) {
191782094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
191882094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
191982094794SBarry Smith 	nlocal = m;
192082094794SBarry Smith       } else {
192182094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
192282094794SBarry Smith       }
192382094794SBarry Smith     } else {
192482094794SBarry Smith       nlocal = csize/bs;
192582094794SBarry Smith     }
192682094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
192782094794SBarry Smith     rstart = rend - nlocal;
192882094794SBarry Smith     if (rank == size - 1 && rend != n) {
192982094794SBarry Smith       SETERRQ2(PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
193082094794SBarry Smith     }
193182094794SBarry Smith 
193282094794SBarry Smith     /* next, compute all the lengths */
193382094794SBarry Smith     ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&dlens);CHKERRQ(ierr);
193482094794SBarry Smith     olens = dlens + m;
193582094794SBarry Smith     for (i=0; i<m; i++) {
193682094794SBarry Smith       jend = ii[i+1] - ii[i];
193782094794SBarry Smith       olen = 0;
193882094794SBarry Smith       dlen = 0;
193982094794SBarry Smith       for (j=0; j<jend; j++) {
194082094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
194182094794SBarry Smith         else dlen++;
194282094794SBarry Smith         jj++;
194382094794SBarry Smith       }
194482094794SBarry Smith       olens[i] = olen;
194582094794SBarry Smith       dlens[i] = dlen;
194682094794SBarry Smith     }
194782094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
194882094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
194982094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
195082094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
195182094794SBarry Smith     ierr = PetscFree(dlens);CHKERRQ(ierr);
195282094794SBarry Smith   } else {
195382094794SBarry Smith     PetscInt ml,nl;
195482094794SBarry Smith 
195582094794SBarry Smith     M = *newmat;
195682094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
195782094794SBarry Smith     if (ml != m) SETERRQ(PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
195882094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
195982094794SBarry Smith     /*
196082094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
196182094794SBarry Smith        rather than the slower MatSetValues().
196282094794SBarry Smith     */
196382094794SBarry Smith     M->was_assembled = PETSC_TRUE;
196482094794SBarry Smith     M->assembled     = PETSC_FALSE;
196582094794SBarry Smith   }
196682094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
196782094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
196882094794SBarry Smith   aij = (Mat_SeqBAIJ*)(Mreuse)->data;
196982094794SBarry Smith   ii  = aij->i;
197082094794SBarry Smith   jj  = aij->j;
197182094794SBarry Smith   aa  = aij->a;
197282094794SBarry Smith   for (i=0; i<m; i++) {
197382094794SBarry Smith     row   = rstart/bs + i;
197482094794SBarry Smith     nz    = ii[i+1] - ii[i];
197582094794SBarry Smith     cwork = jj;     jj += nz;
197682094794SBarry Smith     vwork = aa;     aa += nz;
197782094794SBarry Smith     ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
197882094794SBarry Smith   }
197982094794SBarry Smith 
198082094794SBarry Smith   ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
198182094794SBarry Smith   ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
198282094794SBarry Smith   *newmat = M;
198382094794SBarry Smith 
198482094794SBarry Smith   /* save submatrix used in processor for next request */
198582094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
198682094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
198782094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
198882094794SBarry Smith   }
198982094794SBarry Smith 
199082094794SBarry Smith   PetscFunctionReturn(0);
199182094794SBarry Smith }
199282094794SBarry Smith 
199382094794SBarry Smith #undef __FUNCT__
199482094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
199582094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
199682094794SBarry Smith {
199782094794SBarry Smith   MPI_Comm       comm,pcomm;
199882094794SBarry Smith   PetscInt       first,local_size,nrows;
199982094794SBarry Smith   const PetscInt *rows;
2000dbf0e21dSBarry Smith   PetscMPIInt    size;
200182094794SBarry Smith   IS             crowp,growp,irowp,lrowp,lcolp,icolp;
200282094794SBarry Smith   PetscErrorCode ierr;
200382094794SBarry Smith 
200482094794SBarry Smith   PetscFunctionBegin;
200582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
200682094794SBarry Smith   /* make a collective version of 'rowp' */
200782094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
200882094794SBarry Smith   if (pcomm==comm) {
200982094794SBarry Smith     crowp = rowp;
201082094794SBarry Smith   } else {
201182094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
201282094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
201382094794SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,&crowp);CHKERRQ(ierr);
201482094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
201582094794SBarry Smith   }
201682094794SBarry Smith   /* collect the global row permutation and invert it */
201782094794SBarry Smith   ierr = ISAllGather(crowp,&growp);CHKERRQ(ierr);
201882094794SBarry Smith   ierr = ISSetPermutation(growp);CHKERRQ(ierr);
201982094794SBarry Smith   if (pcomm!=comm) {
202082094794SBarry Smith     ierr = ISDestroy(crowp);CHKERRQ(ierr);
202182094794SBarry Smith   }
202282094794SBarry Smith   ierr = ISInvertPermutation(growp,PETSC_DECIDE,&irowp);CHKERRQ(ierr);
202382094794SBarry Smith   /* get the local target indices */
202482094794SBarry Smith   ierr = MatGetOwnershipRange(A,&first,PETSC_NULL);CHKERRQ(ierr);
202582094794SBarry Smith   ierr = MatGetLocalSize(A,&local_size,PETSC_NULL);CHKERRQ(ierr);
202682094794SBarry Smith   ierr = ISGetIndices(irowp,&rows);CHKERRQ(ierr);
202782094794SBarry Smith   ierr = ISCreateGeneral(MPI_COMM_SELF,local_size,rows+first,&lrowp);CHKERRQ(ierr);
202882094794SBarry Smith   ierr = ISRestoreIndices(irowp,&rows);CHKERRQ(ierr);
202982094794SBarry Smith   ierr = ISDestroy(irowp);CHKERRQ(ierr);
203082094794SBarry Smith   /* the column permutation is so much easier;
203182094794SBarry Smith      make a local version of 'colp' and invert it */
203282094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2033dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2034dbf0e21dSBarry Smith   if (size==1) {
203582094794SBarry Smith     lcolp = colp;
203682094794SBarry Smith   } else {
203782094794SBarry Smith     ierr = ISGetSize(colp,&nrows);CHKERRQ(ierr);
203882094794SBarry Smith     ierr = ISGetIndices(colp,&rows);CHKERRQ(ierr);
203982094794SBarry Smith     ierr = ISCreateGeneral(MPI_COMM_SELF,nrows,rows,&lcolp);CHKERRQ(ierr);
204082094794SBarry Smith   }
2041dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
204282094794SBarry Smith   ierr = ISInvertPermutation(lcolp,PETSC_DECIDE,&icolp);CHKERRQ(ierr);
20434aa3045dSJed Brown   ierr = ISSetPermutation(icolp);CHKERRQ(ierr);
2044dbf0e21dSBarry Smith   if (size>1) {
204582094794SBarry Smith     ierr = ISRestoreIndices(colp,&rows);CHKERRQ(ierr);
204682094794SBarry Smith     ierr = ISDestroy(lcolp);CHKERRQ(ierr);
204782094794SBarry Smith   }
204882094794SBarry Smith   /* now we just get the submatrix */
20494aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,lrowp,icolp,local_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
205082094794SBarry Smith   /* clean up */
205182094794SBarry Smith   ierr = ISDestroy(lrowp);CHKERRQ(ierr);
205282094794SBarry Smith   ierr = ISDestroy(icolp);CHKERRQ(ierr);
205382094794SBarry Smith   PetscFunctionReturn(0);
205482094794SBarry Smith }
205582094794SBarry Smith 
20568c7482ecSBarry Smith #undef __FUNCT__
20578c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
20588c7482ecSBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
20598c7482ecSBarry Smith {
20608c7482ecSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*) mat->data;
20618c7482ecSBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)baij->B->data;
20628c7482ecSBarry Smith 
20638c7482ecSBarry Smith   PetscFunctionBegin;
20648c7482ecSBarry Smith   if (nghosts) { *nghosts = B->nbs;}
20658c7482ecSBarry Smith   if (ghosts) {*ghosts = baij->garray;}
20668c7482ecSBarry Smith   PetscFunctionReturn(0);
20678c7482ecSBarry Smith }
20688c7482ecSBarry Smith 
2069f6d58c54SBarry Smith EXTERN PetscErrorCode CreateColmap_MPIBAIJ_Private(Mat);
2070f6d58c54SBarry Smith 
2071f6d58c54SBarry Smith #undef __FUNCT__
2072f6d58c54SBarry Smith #define __FUNCT__ "MatFDColoringCreate_MPIBAIJ"
2073f6d58c54SBarry Smith /*
2074f6d58c54SBarry Smith     This routine is almost identical to MatFDColoringCreate_MPIBAIJ()!
2075f6d58c54SBarry Smith */
2076f6d58c54SBarry Smith PetscErrorCode MatFDColoringCreate_MPIBAIJ(Mat mat,ISColoring iscoloring,MatFDColoring c)
2077f6d58c54SBarry Smith {
2078f6d58c54SBarry Smith   Mat_MPIBAIJ            *baij = (Mat_MPIBAIJ*)mat->data;
2079f6d58c54SBarry Smith   PetscErrorCode        ierr;
2080f6d58c54SBarry Smith   PetscMPIInt           size,*ncolsonproc,*disp,nn;
2081f6d58c54SBarry Smith   PetscInt              bs,i,n,nrows,j,k,m,*rows = 0,*A_ci,*A_cj,ncols,col;
2082f6d58c54SBarry Smith   const PetscInt        *is;
2083f6d58c54SBarry Smith   PetscInt              nis = iscoloring->n,nctot,*cols,*B_ci,*B_cj;
2084f6d58c54SBarry Smith   PetscInt              *rowhit,M,cstart,cend,colb;
2085f6d58c54SBarry Smith   PetscInt              *columnsforrow,l;
2086f6d58c54SBarry Smith   IS                    *isa;
2087f6d58c54SBarry Smith   PetscTruth             done,flg;
2088f6d58c54SBarry Smith   ISLocalToGlobalMapping map = mat->bmapping;
2089f6d58c54SBarry Smith   PetscInt               *ltog = (map ? map->indices : (PetscInt*) PETSC_NULL) ,ctype=c->ctype;
2090f6d58c54SBarry Smith 
2091f6d58c54SBarry Smith   PetscFunctionBegin;
2092f6d58c54SBarry Smith   if (!mat->assembled) {
2093f6d58c54SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Matrix must be assembled first; MatAssemblyBegin/End();");
2094f6d58c54SBarry Smith   }
2095f6d58c54SBarry Smith   if (ctype == IS_COLORING_GHOSTED && !map) SETERRQ(PETSC_ERR_ARG_INCOMP,"When using ghosted differencing matrix must have local to global mapping provided with MatSetLocalToGlobalMappingBlock");
2096f6d58c54SBarry Smith 
2097f6d58c54SBarry Smith   ierr = ISColoringGetIS(iscoloring,PETSC_IGNORE,&isa);CHKERRQ(ierr);
2098f6d58c54SBarry Smith 
2099f6d58c54SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
2100f6d58c54SBarry Smith   M                = mat->rmap->n/bs;
2101f6d58c54SBarry Smith   cstart           = mat->cmap->rstart/bs;
2102f6d58c54SBarry Smith   cend             = mat->cmap->rend/bs;
2103f6d58c54SBarry Smith   c->M             = mat->rmap->N/bs;  /* set the global rows and columns and local rows */
2104f6d58c54SBarry Smith   c->N             = mat->cmap->N/bs;
2105f6d58c54SBarry Smith   c->m             = mat->rmap->n/bs;
2106f6d58c54SBarry Smith   c->rstart        = mat->rmap->rstart/bs;
2107f6d58c54SBarry Smith 
2108f6d58c54SBarry Smith   c->ncolors       = nis;
2109f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->ncolumns);CHKERRQ(ierr);
2110f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columns);CHKERRQ(ierr);
2111f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt),&c->nrows);CHKERRQ(ierr);
2112f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->rows);CHKERRQ(ierr);
2113f6d58c54SBarry Smith   ierr             = PetscMalloc(nis*sizeof(PetscInt*),&c->columnsforrow);CHKERRQ(ierr);
2114f6d58c54SBarry Smith   ierr = PetscLogObjectMemory(c,5*nis*sizeof(PetscInt));CHKERRQ(ierr);
2115f6d58c54SBarry Smith 
2116f6d58c54SBarry Smith   /* Allow access to data structures of local part of matrix */
2117f6d58c54SBarry Smith   if (!baij->colmap) {
2118f6d58c54SBarry Smith     ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
2119f6d58c54SBarry Smith   }
2120f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2121f6d58c54SBarry Smith   ierr = MatGetColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2122f6d58c54SBarry Smith 
2123f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&rowhit);CHKERRQ(ierr);
2124f6d58c54SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&columnsforrow);CHKERRQ(ierr);
2125f6d58c54SBarry Smith 
2126f6d58c54SBarry Smith   for (i=0; i<nis; i++) {
2127f6d58c54SBarry Smith     ierr = ISGetLocalSize(isa[i],&n);CHKERRQ(ierr);
2128f6d58c54SBarry Smith     ierr = ISGetIndices(isa[i],&is);CHKERRQ(ierr);
2129f6d58c54SBarry Smith     c->ncolumns[i] = n;
2130f6d58c54SBarry Smith     if (n) {
2131f6d58c54SBarry Smith       ierr = PetscMalloc(n*sizeof(PetscInt),&c->columns[i]);CHKERRQ(ierr);
2132f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,n*sizeof(PetscInt));CHKERRQ(ierr);
2133f6d58c54SBarry Smith       ierr = PetscMemcpy(c->columns[i],is,n*sizeof(PetscInt));CHKERRQ(ierr);
2134f6d58c54SBarry Smith     } else {
2135f6d58c54SBarry Smith       c->columns[i]  = 0;
2136f6d58c54SBarry Smith     }
2137f6d58c54SBarry Smith 
2138f6d58c54SBarry Smith     if (ctype == IS_COLORING_GLOBAL){
2139f6d58c54SBarry Smith       /* Determine the total (parallel) number of columns of this color */
2140f6d58c54SBarry Smith       ierr = MPI_Comm_size(((PetscObject)mat)->comm,&size);CHKERRQ(ierr);
2141f6d58c54SBarry Smith       ierr = PetscMalloc(2*size*sizeof(PetscInt*),&ncolsonproc);CHKERRQ(ierr);
2142f6d58c54SBarry Smith       disp = ncolsonproc + size;
2143f6d58c54SBarry Smith 
2144f6d58c54SBarry Smith       nn   = PetscMPIIntCast(n);
2145f6d58c54SBarry Smith       ierr = MPI_Allgather(&nn,1,MPI_INT,ncolsonproc,1,MPI_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2146f6d58c54SBarry Smith       nctot = 0; for (j=0; j<size; j++) {nctot += ncolsonproc[j];}
2147f6d58c54SBarry Smith       if (!nctot) {
2148f6d58c54SBarry Smith         ierr = PetscInfo(mat,"Coloring of matrix has some unneeded colors with no corresponding rows\n");CHKERRQ(ierr);
2149f6d58c54SBarry Smith       }
2150f6d58c54SBarry Smith 
2151f6d58c54SBarry Smith       disp[0] = 0;
2152f6d58c54SBarry Smith       for (j=1; j<size; j++) {
2153f6d58c54SBarry Smith         disp[j] = disp[j-1] + ncolsonproc[j-1];
2154f6d58c54SBarry Smith       }
2155f6d58c54SBarry Smith 
2156f6d58c54SBarry Smith       /* Get complete list of columns for color on each processor */
2157f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2158f6d58c54SBarry Smith       ierr = MPI_Allgatherv((void*)is,n,MPIU_INT,cols,ncolsonproc,disp,MPIU_INT,((PetscObject)mat)->comm);CHKERRQ(ierr);
2159f6d58c54SBarry Smith       ierr = PetscFree(ncolsonproc);CHKERRQ(ierr);
2160f6d58c54SBarry Smith     } else if (ctype == IS_COLORING_GHOSTED){
2161f6d58c54SBarry Smith       /* Determine local number of columns of this color on this process, including ghost points */
2162f6d58c54SBarry Smith       nctot = n;
2163f6d58c54SBarry Smith       ierr = PetscMalloc((nctot+1)*sizeof(PetscInt),&cols);CHKERRQ(ierr);
2164f6d58c54SBarry Smith       ierr = PetscMemcpy(cols,is,n*sizeof(PetscInt));CHKERRQ(ierr);
2165f6d58c54SBarry Smith     } else {
2166f6d58c54SBarry Smith       SETERRQ(PETSC_ERR_SUP,"Not provided for this MatFDColoring type");
2167f6d58c54SBarry Smith     }
2168f6d58c54SBarry Smith 
2169f6d58c54SBarry Smith     /*
2170f6d58c54SBarry Smith        Mark all rows affect by these columns
2171f6d58c54SBarry Smith     */
2172f6d58c54SBarry Smith     /* Temporary option to allow for debugging/testing */
2173f6d58c54SBarry Smith     flg  = PETSC_FALSE;
2174f6d58c54SBarry Smith     ierr = PetscOptionsGetTruth(PETSC_NULL,"-matfdcoloring_slow",&flg,PETSC_NULL);CHKERRQ(ierr);
2175f6d58c54SBarry Smith     if (!flg) {/*-----------------------------------------------------------------------------*/
2176f6d58c54SBarry Smith       /* crude, fast version */
2177f6d58c54SBarry Smith       ierr = PetscMemzero(rowhit,M*sizeof(PetscInt));CHKERRQ(ierr);
2178f6d58c54SBarry Smith       /* loop over columns*/
2179f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2180f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2181f6d58c54SBarry Smith           col = ltog[cols[j]];
2182f6d58c54SBarry Smith         } else {
2183f6d58c54SBarry Smith           col  = cols[j];
2184f6d58c54SBarry Smith         }
2185f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2186f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2187f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2188f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2189f6d58c54SBarry Smith         } else {
2190f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2191f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr)
2192f6d58c54SBarry Smith 	  colb --;
2193f6d58c54SBarry Smith #else
2194f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2195f6d58c54SBarry Smith #endif
2196f6d58c54SBarry Smith           if (colb == -1) {
2197f6d58c54SBarry Smith             m = 0;
2198f6d58c54SBarry Smith           } else {
2199f6d58c54SBarry Smith             colb = colb/bs;
2200f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2201f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2202f6d58c54SBarry Smith           }
2203f6d58c54SBarry Smith         }
2204f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2205f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2206f6d58c54SBarry Smith           rowhit[*rows++] = col + 1;
2207f6d58c54SBarry Smith         }
2208f6d58c54SBarry Smith       }
2209f6d58c54SBarry Smith 
2210f6d58c54SBarry Smith       /* count the number of hits */
2211f6d58c54SBarry Smith       nrows = 0;
2212f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2213f6d58c54SBarry Smith         if (rowhit[j]) nrows++;
2214f6d58c54SBarry Smith       }
2215f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2216f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2217f6d58c54SBarry Smith       ierr                = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2218f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,2*(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2219f6d58c54SBarry Smith       nrows = 0;
2220f6d58c54SBarry Smith       for (j=0; j<M; j++) {
2221f6d58c54SBarry Smith         if (rowhit[j]) {
2222f6d58c54SBarry Smith           c->rows[i][nrows]           = j;
2223f6d58c54SBarry Smith           c->columnsforrow[i][nrows] = rowhit[j] - 1;
2224f6d58c54SBarry Smith           nrows++;
2225f6d58c54SBarry Smith         }
2226f6d58c54SBarry Smith       }
2227f6d58c54SBarry Smith     } else {/*-------------------------------------------------------------------------------*/
2228f6d58c54SBarry Smith       /* slow version, using rowhit as a linked list */
2229f6d58c54SBarry Smith       PetscInt currentcol,fm,mfm;
2230f6d58c54SBarry Smith       rowhit[M] = M;
2231f6d58c54SBarry Smith       nrows     = 0;
2232f6d58c54SBarry Smith       /* loop over columns*/
2233f6d58c54SBarry Smith       for (j=0; j<nctot; j++) {
2234f6d58c54SBarry Smith         if (ctype == IS_COLORING_GHOSTED) {
2235f6d58c54SBarry Smith           col = ltog[cols[j]];
2236f6d58c54SBarry Smith         } else {
2237f6d58c54SBarry Smith           col  = cols[j];
2238f6d58c54SBarry Smith         }
2239f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2240f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2241f6d58c54SBarry Smith           rows = A_cj + A_ci[col-cstart];
2242f6d58c54SBarry Smith           m    = A_ci[col-cstart+1] - A_ci[col-cstart];
2243f6d58c54SBarry Smith         } else {
2244f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2245f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2246f6d58c54SBarry Smith           colb --;
2247f6d58c54SBarry Smith #else
2248f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2249f6d58c54SBarry Smith #endif
2250f6d58c54SBarry Smith           if (colb == -1) {
2251f6d58c54SBarry Smith             m = 0;
2252f6d58c54SBarry Smith           } else {
2253f6d58c54SBarry Smith             colb = colb/bs;
2254f6d58c54SBarry Smith             rows = B_cj + B_ci[colb];
2255f6d58c54SBarry Smith             m    = B_ci[colb+1] - B_ci[colb];
2256f6d58c54SBarry Smith           }
2257f6d58c54SBarry Smith         }
2258f6d58c54SBarry Smith 
2259f6d58c54SBarry Smith         /* loop over columns marking them in rowhit */
2260f6d58c54SBarry Smith         fm    = M; /* fm points to first entry in linked list */
2261f6d58c54SBarry Smith         for (k=0; k<m; k++) {
2262f6d58c54SBarry Smith           currentcol = *rows++;
2263f6d58c54SBarry Smith 	  /* is it already in the list? */
2264f6d58c54SBarry Smith           do {
2265f6d58c54SBarry Smith             mfm  = fm;
2266f6d58c54SBarry Smith             fm   = rowhit[fm];
2267f6d58c54SBarry Smith           } while (fm < currentcol);
2268f6d58c54SBarry Smith           /* not in list so add it */
2269f6d58c54SBarry Smith           if (fm != currentcol) {
2270f6d58c54SBarry Smith             nrows++;
2271f6d58c54SBarry Smith             columnsforrow[currentcol] = col;
2272f6d58c54SBarry Smith             /* next three lines insert new entry into linked list */
2273f6d58c54SBarry Smith             rowhit[mfm]               = currentcol;
2274f6d58c54SBarry Smith             rowhit[currentcol]        = fm;
2275f6d58c54SBarry Smith             fm                        = currentcol;
2276f6d58c54SBarry Smith             /* fm points to present position in list since we know the columns are sorted */
2277f6d58c54SBarry Smith           } else {
2278f6d58c54SBarry Smith             SETERRQ(PETSC_ERR_PLIB,"Invalid coloring of matrix detected");
2279f6d58c54SBarry Smith           }
2280f6d58c54SBarry Smith         }
2281f6d58c54SBarry Smith       }
2282f6d58c54SBarry Smith       c->nrows[i]         = nrows;
2283f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->rows[i]);CHKERRQ(ierr);
2284f6d58c54SBarry Smith       ierr = PetscMalloc((nrows+1)*sizeof(PetscInt),&c->columnsforrow[i]);CHKERRQ(ierr);
2285f6d58c54SBarry Smith       ierr = PetscLogObjectMemory(c,(nrows+1)*sizeof(PetscInt));CHKERRQ(ierr);
2286f6d58c54SBarry Smith       /* now store the linked list of rows into c->rows[i] */
2287f6d58c54SBarry Smith       nrows = 0;
2288f6d58c54SBarry Smith       fm    = rowhit[M];
2289f6d58c54SBarry Smith       do {
2290f6d58c54SBarry Smith         c->rows[i][nrows]            = fm;
2291f6d58c54SBarry Smith         c->columnsforrow[i][nrows++] = columnsforrow[fm];
2292f6d58c54SBarry Smith         fm                           = rowhit[fm];
2293f6d58c54SBarry Smith       } while (fm < M);
2294f6d58c54SBarry Smith     } /* ---------------------------------------------------------------------------------------*/
2295f6d58c54SBarry Smith     ierr = PetscFree(cols);CHKERRQ(ierr);
2296f6d58c54SBarry Smith   }
2297f6d58c54SBarry Smith 
2298f6d58c54SBarry Smith   /* Optimize by adding the vscale, and scaleforrow[][] fields */
2299f6d58c54SBarry Smith   /*
2300f6d58c54SBarry Smith        vscale will contain the "diagonal" on processor scalings followed by the off processor
2301f6d58c54SBarry Smith   */
2302f6d58c54SBarry Smith   if (ctype == IS_COLORING_GLOBAL) {
2303f6d58c54SBarry Smith     PetscInt *garray;
2304f6d58c54SBarry Smith     ierr = PetscMalloc(baij->B->cmap->n*sizeof(PetscInt),&garray);CHKERRQ(ierr);
2305f6d58c54SBarry Smith     for (i=0; i<baij->B->cmap->n/bs; i++) {
2306f6d58c54SBarry Smith       for (j=0; j<bs; j++) {
2307f6d58c54SBarry Smith         garray[i*bs+j] = bs*baij->garray[i]+j;
2308f6d58c54SBarry Smith       }
2309f6d58c54SBarry Smith     }
2310f6d58c54SBarry Smith     ierr = VecCreateGhost(((PetscObject)mat)->comm,baij->A->rmap->n,PETSC_DETERMINE,baij->B->cmap->n,garray,&c->vscale);CHKERRQ(ierr);
2311f6d58c54SBarry Smith     ierr = PetscFree(garray);CHKERRQ(ierr);
2312f6d58c54SBarry Smith     CHKMEMQ;
2313f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2314f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2315f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2316f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2317f6d58c54SBarry Smith         col = c->columnsforrow[k][l];
2318f6d58c54SBarry Smith         if (col >= cstart && col < cend) {
2319f6d58c54SBarry Smith           /* column is in diagonal block of matrix */
2320f6d58c54SBarry Smith           colb = col - cstart;
2321f6d58c54SBarry Smith         } else {
2322f6d58c54SBarry Smith           /* column  is in "off-processor" part */
2323f6d58c54SBarry Smith #if defined (PETSC_USE_CTABLE)
2324f6d58c54SBarry Smith           ierr = PetscTableFind(baij->colmap,col+1,&colb);CHKERRQ(ierr);
2325f6d58c54SBarry Smith           colb --;
2326f6d58c54SBarry Smith #else
2327f6d58c54SBarry Smith           colb = baij->colmap[col] - 1;
2328f6d58c54SBarry Smith #endif
2329f6d58c54SBarry Smith           colb = colb/bs;
2330f6d58c54SBarry Smith           colb += cend - cstart;
2331f6d58c54SBarry Smith         }
2332f6d58c54SBarry Smith         c->vscaleforrow[k][l] = colb;
2333f6d58c54SBarry Smith       }
2334f6d58c54SBarry Smith     }
2335f6d58c54SBarry Smith   } else if (ctype == IS_COLORING_GHOSTED) {
2336f6d58c54SBarry Smith     /* Get gtol mapping */
2337f6d58c54SBarry Smith     PetscInt N = mat->cmap->N, *gtol;
2338f6d58c54SBarry Smith     ierr = PetscMalloc((N+1)*sizeof(PetscInt),&gtol);CHKERRQ(ierr);
2339f6d58c54SBarry Smith     for (i=0; i<N; i++) gtol[i] = -1;
2340f6d58c54SBarry Smith     for (i=0; i<map->n; i++) gtol[ltog[i]] = i;
2341f6d58c54SBarry Smith 
2342f6d58c54SBarry Smith     c->vscale = 0; /* will be created in MatFDColoringApply() */
2343f6d58c54SBarry Smith     ierr = PetscMalloc(c->ncolors*sizeof(PetscInt*),&c->vscaleforrow);CHKERRQ(ierr);
2344f6d58c54SBarry Smith     for (k=0; k<c->ncolors; k++) {
2345f6d58c54SBarry Smith       ierr = PetscMalloc((c->nrows[k]+1)*sizeof(PetscInt),&c->vscaleforrow[k]);CHKERRQ(ierr);
2346f6d58c54SBarry Smith       for (l=0; l<c->nrows[k]; l++) {
2347f6d58c54SBarry Smith         col = c->columnsforrow[k][l];      /* global column index */
2348f6d58c54SBarry Smith         c->vscaleforrow[k][l] = gtol[col]; /* local column index */
2349f6d58c54SBarry Smith       }
2350f6d58c54SBarry Smith     }
2351f6d58c54SBarry Smith     ierr = PetscFree(gtol);CHKERRQ(ierr);
2352f6d58c54SBarry Smith   }
2353f6d58c54SBarry Smith   ierr = ISColoringRestoreIS(iscoloring,&isa);CHKERRQ(ierr);
2354f6d58c54SBarry Smith 
2355f6d58c54SBarry Smith   ierr = PetscFree(rowhit);CHKERRQ(ierr);
2356f6d58c54SBarry Smith   ierr = PetscFree(columnsforrow);CHKERRQ(ierr);
2357f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->A,0,PETSC_FALSE,PETSC_FALSE,&ncols,&A_ci,&A_cj,&done);CHKERRQ(ierr);
2358f6d58c54SBarry Smith   ierr = MatRestoreColumnIJ(baij->B,0,PETSC_FALSE,PETSC_FALSE,&ncols,&B_ci,&B_cj,&done);CHKERRQ(ierr);
2359f6d58c54SBarry Smith     CHKMEMQ;
2360f6d58c54SBarry Smith   PetscFunctionReturn(0);
2361f6d58c54SBarry Smith }
2362f6d58c54SBarry Smith 
2363f6d58c54SBarry Smith #undef __FUNCT__
2364f6d58c54SBarry Smith #define __FUNCT__ "MatGetSeqNonzerostructure_MPIBAIJ"
2365f6d58c54SBarry Smith PetscErrorCode MatGetSeqNonzerostructure_MPIBAIJ(Mat A,Mat *newmat)
2366f6d58c54SBarry Smith {
2367f6d58c54SBarry Smith   Mat            B;
2368f6d58c54SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ *)A->data;
2369f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2370f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2371f6d58c54SBarry Smith   PetscErrorCode ierr;
2372f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2373f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2374f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2375f6d58c54SBarry Smith 
2376f6d58c54SBarry Smith   PetscFunctionBegin;
2377f6d58c54SBarry Smith   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
2378f6d58c54SBarry Smith   ierr = MPI_Comm_rank(((PetscObject)A)->comm,&rank);CHKERRQ(ierr);
2379f6d58c54SBarry Smith 
2380f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2381f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2382f6d58c54SBarry Smith   */
2383f6d58c54SBarry Smith   ierr = PetscMalloc((A->rmap->N/bs)*sizeof(PetscInt),&lens);CHKERRQ(ierr);
2384f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2385f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2386f6d58c54SBarry Smith   }
2387f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2388f6d58c54SBarry Smith   ierr = PetscMalloc(2*size*sizeof(PetscMPIInt),&recvcounts);CHKERRQ(ierr);
2389f6d58c54SBarry Smith   displs     = recvcounts + size;
2390f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2391f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2392f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2393f6d58c54SBarry Smith   }
2394f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2395f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2396f6d58c54SBarry Smith #else
2397f6d58c54SBarry Smith   ierr  = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2398f6d58c54SBarry Smith #endif
2399f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2400f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2401f6d58c54SBarry Smith   */
2402f6d58c54SBarry Smith   ierr  = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2403f6d58c54SBarry Smith   ierr  = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2404f6d58c54SBarry Smith   ierr  = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2405f6d58c54SBarry Smith   ierr  = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2406f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2407f6d58c54SBarry Smith 
2408f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2409f6d58c54SBarry Smith     Copy my part of matrix column indices over
2410f6d58c54SBarry Smith   */
2411f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2412f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2413f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2414f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2415f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2416f6d58c54SBarry Smith   cnt        = 0;
2417f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2418f6d58c54SBarry Smith 
2419f6d58c54SBarry Smith     /* put in lower diagonal portion */
2420f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2421f6d58c54SBarry Smith     while (m > 0) {
2422f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2423f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2424f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2425f6d58c54SBarry Smith       m--;
2426f6d58c54SBarry Smith     }
2427f6d58c54SBarry Smith 
2428f6d58c54SBarry Smith     /* put in diagonal portion */
2429f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2430f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2431f6d58c54SBarry Smith     }
2432f6d58c54SBarry Smith 
2433f6d58c54SBarry Smith     /* put in upper diagonal portion */
2434f6d58c54SBarry Smith     while (m-- > 0) {
2435f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2436f6d58c54SBarry Smith     }
2437f6d58c54SBarry Smith   }
2438f6d58c54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2439f6d58c54SBarry Smith 
2440f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2441f6d58c54SBarry Smith     Gather all column indices to all processors
2442f6d58c54SBarry Smith   */
2443f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2444f6d58c54SBarry Smith     recvcounts[i] = 0;
2445f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2446f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2447f6d58c54SBarry Smith     }
2448f6d58c54SBarry Smith   }
2449f6d58c54SBarry Smith   displs[0]  = 0;
2450f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2451f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2452f6d58c54SBarry Smith   }
2453f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2454f6d58c54SBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2455f6d58c54SBarry Smith #else
2456f6d58c54SBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,((PetscObject)A)->comm);CHKERRQ(ierr);
2457f6d58c54SBarry Smith #endif
2458f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2459f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2460f6d58c54SBarry Smith   */
2461f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2462f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2463f6d58c54SBarry Smith   /* set the b->i indices */
2464f6d58c54SBarry Smith   b->i[0] = 0;
2465f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2466f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2467f6d58c54SBarry Smith   }
2468f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2469f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2470f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2471f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2472f6d58c54SBarry Smith 
2473f6d58c54SBarry Smith   if (A->symmetric){
2474f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2475f6d58c54SBarry Smith   } else if (A->hermitian) {
2476f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2477f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2478f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2479f6d58c54SBarry Smith   }
2480f6d58c54SBarry Smith   *newmat = B;
2481f6d58c54SBarry Smith   PetscFunctionReturn(0);
2482f6d58c54SBarry Smith }
2483f6d58c54SBarry Smith 
2484b1a666ecSBarry Smith #undef __FUNCT__
2485b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2486b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2487b1a666ecSBarry Smith {
2488b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2489b1a666ecSBarry Smith   PetscErrorCode ierr;
2490b1a666ecSBarry Smith   Vec            bb1 = 0;
2491b1a666ecSBarry Smith 
2492b1a666ecSBarry Smith   PetscFunctionBegin;
2493b1a666ecSBarry Smith   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
2494b1a666ecSBarry Smith     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
2495b1a666ecSBarry Smith   }
2496b1a666ecSBarry Smith 
2497b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2498b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2499b1a666ecSBarry Smith     PetscFunctionReturn(0);
2500b1a666ecSBarry Smith   }
2501b1a666ecSBarry Smith 
2502b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP){
2503b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2504b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2505b1a666ecSBarry Smith       its--;
2506b1a666ecSBarry Smith     }
2507b1a666ecSBarry Smith 
2508b1a666ecSBarry Smith     while (its--) {
2509b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2510b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2511b1a666ecSBarry Smith 
2512b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2513b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2514b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2515b1a666ecSBarry Smith 
2516b1a666ecSBarry Smith       /* local sweep */
2517b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2518b1a666ecSBarry Smith     }
2519b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP){
2520b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2521b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2522b1a666ecSBarry Smith       its--;
2523b1a666ecSBarry Smith     }
2524b1a666ecSBarry Smith     while (its--) {
2525b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2526b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2527b1a666ecSBarry Smith 
2528b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2529b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2530b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2531b1a666ecSBarry Smith 
2532b1a666ecSBarry Smith       /* local sweep */
2533b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2534b1a666ecSBarry Smith     }
2535b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP){
2536b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2537b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2538b1a666ecSBarry Smith       its--;
2539b1a666ecSBarry Smith     }
2540b1a666ecSBarry Smith     while (its--) {
2541b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2542b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2543b1a666ecSBarry Smith 
2544b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2545b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2546b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2547b1a666ecSBarry Smith 
2548b1a666ecSBarry Smith       /* local sweep */
2549b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2550b1a666ecSBarry Smith     }
2551b1a666ecSBarry Smith   } else {
2552b1a666ecSBarry Smith     SETERRQ(PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2553b1a666ecSBarry Smith   }
2554b1a666ecSBarry Smith 
2555b1a666ecSBarry Smith   if (bb1) {ierr = VecDestroy(bb1);CHKERRQ(ierr);}
2556b1a666ecSBarry Smith   PetscFunctionReturn(0);
2557b1a666ecSBarry Smith }
2558b1a666ecSBarry Smith 
2559f6d58c54SBarry Smith extern PetscErrorCode PETSCMAT_DLLEXPORT MatFDColoringApply_BAIJ(Mat,MatFDColoring,Vec,MatStructure*,void*);
2560f6d58c54SBarry Smith 
25618c7482ecSBarry Smith 
256279bdfe76SSatish Balay /* -------------------------------------------------------------------*/
2563cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
2564cc2dc46cSBarry Smith        MatSetValues_MPIBAIJ,
2565cc2dc46cSBarry Smith        MatGetRow_MPIBAIJ,
2566cc2dc46cSBarry Smith        MatRestoreRow_MPIBAIJ,
2567cc2dc46cSBarry Smith        MatMult_MPIBAIJ,
256897304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ,
25697c922b88SBarry Smith        MatMultTranspose_MPIBAIJ,
25707c922b88SBarry Smith        MatMultTransposeAdd_MPIBAIJ,
2571cc2dc46cSBarry Smith        0,
2572cc2dc46cSBarry Smith        0,
2573cc2dc46cSBarry Smith        0,
257497304618SKris Buschelman /*10*/ 0,
2575cc2dc46cSBarry Smith        0,
2576cc2dc46cSBarry Smith        0,
2577b1a666ecSBarry Smith        MatSOR_MPIBAIJ,
2578cc2dc46cSBarry Smith        MatTranspose_MPIBAIJ,
257997304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ,
25807fc3c18eSBarry Smith        MatEqual_MPIBAIJ,
2581cc2dc46cSBarry Smith        MatGetDiagonal_MPIBAIJ,
2582cc2dc46cSBarry Smith        MatDiagonalScale_MPIBAIJ,
2583cc2dc46cSBarry Smith        MatNorm_MPIBAIJ,
258497304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ,
2585cc2dc46cSBarry Smith        MatAssemblyEnd_MPIBAIJ,
2586cc2dc46cSBarry Smith        MatSetOption_MPIBAIJ,
2587cc2dc46cSBarry Smith        MatZeroEntries_MPIBAIJ,
2588d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ,
2589cc2dc46cSBarry Smith        0,
2590cc2dc46cSBarry Smith        0,
2591cc2dc46cSBarry Smith        0,
2592cc2dc46cSBarry Smith        0,
2593d519adbfSMatthew Knepley /*29*/ MatSetUpPreallocation_MPIBAIJ,
2594273d9f13SBarry Smith        0,
2595cc2dc46cSBarry Smith        0,
2596cc2dc46cSBarry Smith        0,
2597cc2dc46cSBarry Smith        0,
2598d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ,
2599cc2dc46cSBarry Smith        0,
2600cc2dc46cSBarry Smith        0,
2601cc2dc46cSBarry Smith        0,
2602cc2dc46cSBarry Smith        0,
2603d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ,
2604cc2dc46cSBarry Smith        MatGetSubMatrices_MPIBAIJ,
2605cc2dc46cSBarry Smith        MatIncreaseOverlap_MPIBAIJ,
2606cc2dc46cSBarry Smith        MatGetValues_MPIBAIJ,
26073c896bc6SHong Zhang        MatCopy_MPIBAIJ,
2608d519adbfSMatthew Knepley /*44*/ 0,
2609cc2dc46cSBarry Smith        MatScale_MPIBAIJ,
2610cc2dc46cSBarry Smith        0,
2611cc2dc46cSBarry Smith        0,
2612cc2dc46cSBarry Smith        0,
2613*41c166b1SJed Brown /*49*/ MatSetBlockSize_MPIBAIJ,
2614cc2dc46cSBarry Smith        0,
2615cc2dc46cSBarry Smith        0,
2616cc2dc46cSBarry Smith        0,
2617cc2dc46cSBarry Smith        0,
2618f6d58c54SBarry Smith /*54*/ MatFDColoringCreate_MPIBAIJ,
2619cc2dc46cSBarry Smith        0,
2620cc2dc46cSBarry Smith        MatSetUnfactored_MPIBAIJ,
262182094794SBarry Smith        MatPermute_MPIBAIJ,
2622cc2dc46cSBarry Smith        MatSetValuesBlocked_MPIBAIJ,
2623d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ,
2624f14a1c24SBarry Smith        MatDestroy_MPIBAIJ,
2625f14a1c24SBarry Smith        MatView_MPIBAIJ,
2626357abbc8SBarry Smith        0,
26277843d17aSBarry Smith        0,
2628d519adbfSMatthew Knepley /*64*/ 0,
26297843d17aSBarry Smith        0,
26307843d17aSBarry Smith        0,
26317843d17aSBarry Smith        0,
26327843d17aSBarry Smith        0,
2633d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ,
26347843d17aSBarry Smith        0,
263597304618SKris Buschelman        0,
263697304618SKris Buschelman        0,
263797304618SKris Buschelman        0,
2638d519adbfSMatthew Knepley /*74*/ 0,
2639f6d58c54SBarry Smith        MatFDColoringApply_BAIJ,
264097304618SKris Buschelman        0,
264197304618SKris Buschelman        0,
264297304618SKris Buschelman        0,
2643d519adbfSMatthew Knepley /*79*/ 0,
264497304618SKris Buschelman        0,
264597304618SKris Buschelman        0,
264697304618SKris Buschelman        0,
2647865e5f61SKris Buschelman        MatLoad_MPIBAIJ,
2648d519adbfSMatthew Knepley /*84*/ 0,
2649865e5f61SKris Buschelman        0,
2650865e5f61SKris Buschelman        0,
2651865e5f61SKris Buschelman        0,
2652865e5f61SKris Buschelman        0,
2653d519adbfSMatthew Knepley /*89*/ 0,
2654865e5f61SKris Buschelman        0,
2655865e5f61SKris Buschelman        0,
2656865e5f61SKris Buschelman        0,
2657865e5f61SKris Buschelman        0,
2658d519adbfSMatthew Knepley /*94*/ 0,
2659865e5f61SKris Buschelman        0,
2660865e5f61SKris Buschelman        0,
266199cafbc1SBarry Smith        0,
266299cafbc1SBarry Smith        0,
2663d519adbfSMatthew Knepley /*99*/ 0,
266499cafbc1SBarry Smith        0,
266599cafbc1SBarry Smith        0,
266699cafbc1SBarry Smith        0,
266799cafbc1SBarry Smith        0,
2668d519adbfSMatthew Knepley /*104*/0,
266999cafbc1SBarry Smith        MatRealPart_MPIBAIJ,
26708c7482ecSBarry Smith        MatImaginaryPart_MPIBAIJ,
26718c7482ecSBarry Smith        0,
26728c7482ecSBarry Smith        0,
2673d519adbfSMatthew Knepley /*109*/0,
26748c7482ecSBarry Smith        0,
26758c7482ecSBarry Smith        0,
26768c7482ecSBarry Smith        0,
26778c7482ecSBarry Smith        0,
2678f6d58c54SBarry Smith /*114*/MatGetSeqNonzerostructure_MPIBAIJ,
26798c7482ecSBarry Smith        0,
26808c7482ecSBarry Smith        MatGetGhosts_MPIBAIJ
26818c7482ecSBarry Smith };
268279bdfe76SSatish Balay 
2683e18c124aSSatish Balay EXTERN_C_BEGIN
26844a2ae208SSatish Balay #undef __FUNCT__
26854a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
2686be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
26875ef9f2a5SBarry Smith {
26885ef9f2a5SBarry Smith   PetscFunctionBegin;
26895ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
26905ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
26915ef9f2a5SBarry Smith   PetscFunctionReturn(0);
26925ef9f2a5SBarry Smith }
2693e18c124aSSatish Balay EXTERN_C_END
269479bdfe76SSatish Balay 
2695273d9f13SBarry Smith EXTERN_C_BEGIN
2696f69a0ea3SMatthew Knepley extern PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2697d94109b8SHong Zhang EXTERN_C_END
2698d94109b8SHong Zhang 
2699b8d659d7SLisandro Dalcin EXTERN_C_BEGIN
2700aac34f13SBarry Smith #undef __FUNCT__
2701aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2702cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2703aac34f13SBarry Smith {
2704b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2705b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2706b8d659d7SLisandro Dalcin   const PetscInt *JJ=0;
2707b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2708aac34f13SBarry Smith   PetscErrorCode ierr;
2709aac34f13SBarry Smith 
2710aac34f13SBarry Smith   PetscFunctionBegin;
2711b8d659d7SLisandro Dalcin 
2712b8d659d7SLisandro Dalcin   if (bs < 1) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive but it is %D",bs);
271326283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
271426283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
271526283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
271626283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2717d0f46423SBarry Smith   m      = B->rmap->n/bs;
2718d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2719d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2720d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2721b8d659d7SLisandro Dalcin 
2722cf12db73SBarry Smith   if (ii[0]) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2723aac34f13SBarry Smith   ierr  = PetscMalloc((2*m+1)*sizeof(PetscInt),&d_nnz);CHKERRQ(ierr);
2724aac34f13SBarry Smith   o_nnz = d_nnz + m;
2725aac34f13SBarry Smith   for (i=0; i<m; i++) {
2726cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2727b8d659d7SLisandro Dalcin     if (nz < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2728b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2729cf12db73SBarry Smith     JJ  = jj + ii[i];
2730b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2731aac34f13SBarry Smith       if (*JJ >= cstart) break;
2732aac34f13SBarry Smith       JJ++;
2733aac34f13SBarry Smith     }
2734aac34f13SBarry Smith     d = 0;
2735b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2736aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2737aac34f13SBarry Smith       d++;
2738aac34f13SBarry Smith     }
2739aac34f13SBarry Smith     d_nnz[i] = d;
2740b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2741aac34f13SBarry Smith   }
2742aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2743aac34f13SBarry Smith   ierr = PetscFree(d_nnz);CHKERRQ(ierr);
2744aac34f13SBarry Smith 
2745b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2746b8d659d7SLisandro Dalcin   if (!values) {
2747b8d659d7SLisandro Dalcin     ierr = PetscMalloc(bs*bs*(nz_max+1)*sizeof(PetscScalar),&values);CHKERRQ(ierr);
2748b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2749b8d659d7SLisandro Dalcin   }
2750b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2751b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2752cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2753cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
2754cf12db73SBarry Smith     const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2755b8d659d7SLisandro Dalcin     ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
2756aac34f13SBarry Smith   }
2757aac34f13SBarry Smith 
2758b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2759aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2760aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2761aac34f13SBarry Smith 
2762aac34f13SBarry Smith   PetscFunctionReturn(0);
2763aac34f13SBarry Smith }
2764b8d659d7SLisandro Dalcin EXTERN_C_END
2765aac34f13SBarry Smith 
2766aac34f13SBarry Smith #undef __FUNCT__
2767aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2768aac34f13SBarry Smith /*@C
2769aac34f13SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in AIJ format
2770aac34f13SBarry Smith    (the default parallel PETSc format).
2771aac34f13SBarry Smith 
2772aac34f13SBarry Smith    Collective on MPI_Comm
2773aac34f13SBarry Smith 
2774aac34f13SBarry Smith    Input Parameters:
2775aac34f13SBarry Smith +  A - the matrix
2776aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2777aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2778aac34f13SBarry Smith -  v - optional values in the matrix
2779aac34f13SBarry Smith 
2780aac34f13SBarry Smith    Level: developer
2781aac34f13SBarry Smith 
2782aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2783aac34f13SBarry Smith 
2784aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateMPIAIJ(), MPIAIJ
2785aac34f13SBarry Smith @*/
2786be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2787aac34f13SBarry Smith {
2788aac34f13SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]);
2789aac34f13SBarry Smith 
2790aac34f13SBarry Smith   PetscFunctionBegin;
2791aac34f13SBarry Smith   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",(void (**)(void))&f);CHKERRQ(ierr);
2792aac34f13SBarry Smith   if (f) {
2793aac34f13SBarry Smith     ierr = (*f)(B,bs,i,j,v);CHKERRQ(ierr);
2794aac34f13SBarry Smith   }
2795aac34f13SBarry Smith   PetscFunctionReturn(0);
2796aac34f13SBarry Smith }
2797aac34f13SBarry Smith 
2798d94109b8SHong Zhang EXTERN_C_BEGIN
27994a2ae208SSatish Balay #undef __FUNCT__
2800a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2801be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,PetscInt *d_nnz,PetscInt o_nz,PetscInt *o_nnz)
2802a23d5eceSKris Buschelman {
2803a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2804dfbe8321SBarry Smith   PetscErrorCode ierr;
2805db4efbfdSBarry Smith   PetscInt       i, newbs = PetscAbs(bs);
2806a23d5eceSKris Buschelman 
2807a23d5eceSKris Buschelman   PetscFunctionBegin;
2808db4efbfdSBarry Smith   if (bs < 0) {
28097adad957SLisandro Dalcin     ierr = PetscOptionsBegin(((PetscObject)B)->comm,((PetscObject)B)->prefix,"Options for MPIBAIJ matrix","Mat");CHKERRQ(ierr);
2810db4efbfdSBarry Smith       ierr = PetscOptionsInt("-mat_block_size","Set the blocksize used to store the matrix","MatMPIBAIJSetPreallocation",newbs,&newbs,PETSC_NULL);CHKERRQ(ierr);
28118c07d4e3SBarry Smith     ierr = PetscOptionsEnd();CHKERRQ(ierr);
2812db4efbfdSBarry Smith     bs   = PetscAbs(bs);
2813db4efbfdSBarry Smith   }
2814db4efbfdSBarry Smith   if ((d_nnz || o_nnz) && newbs != bs) {
2815db4efbfdSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONG,"Cannot change blocksize from command line if setting d_nnz or o_nnz");
2816db4efbfdSBarry Smith   }
2817db4efbfdSBarry Smith   bs = newbs;
2818db4efbfdSBarry Smith 
2819a23d5eceSKris Buschelman 
2820a23d5eceSKris Buschelman   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,"Invalid block size specified, must be positive");
2821a23d5eceSKris Buschelman   if (d_nz == PETSC_DEFAULT || d_nz == PETSC_DECIDE) d_nz = 5;
2822a23d5eceSKris Buschelman   if (o_nz == PETSC_DEFAULT || o_nz == PETSC_DECIDE) o_nz = 2;
282377431f27SBarry Smith   if (d_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"d_nz cannot be less than 0: value %D",d_nz);
282477431f27SBarry Smith   if (o_nz < 0) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,"o_nz cannot be less than 0: value %D",o_nz);
2825899cda47SBarry Smith 
282626283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
282726283091SBarry Smith   ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
282826283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
282926283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2830899cda47SBarry Smith 
2831a23d5eceSKris Buschelman   if (d_nnz) {
2832d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
283377431f27SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2834a23d5eceSKris Buschelman     }
2835a23d5eceSKris Buschelman   }
2836a23d5eceSKris Buschelman   if (o_nnz) {
2837d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
283877431f27SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
2839a23d5eceSKris Buschelman     }
2840a23d5eceSKris Buschelman   }
2841a23d5eceSKris Buschelman 
2842a23d5eceSKris Buschelman   b = (Mat_MPIBAIJ*)B->data;
2843a23d5eceSKris Buschelman   b->bs2 = bs*bs;
2844d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
2845d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
2846d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
2847d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
2848a23d5eceSKris Buschelman 
2849a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
2850d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
2851a23d5eceSKris Buschelman   }
2852d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
2853d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
2854d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
2855d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
2856a23d5eceSKris Buschelman 
2857526dfc15SBarry Smith   if (!B->preallocated) {
2858f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
2859d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
28609c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
286152e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->A);CHKERRQ(ierr);
2862f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
2863d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
28649c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
286552e6d16bSBarry Smith     ierr = PetscLogObjectParent(B,b->B);CHKERRQ(ierr);
28667adad957SLisandro Dalcin     ierr = MatStashCreate_Private(((PetscObject)B)->comm,bs,&B->bstash);CHKERRQ(ierr);
2867526dfc15SBarry Smith   }
2868a23d5eceSKris Buschelman 
2869526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
2870526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
2871526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
2872a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2873a23d5eceSKris Buschelman }
2874a23d5eceSKris Buschelman EXTERN_C_END
2875a23d5eceSKris Buschelman 
2876a23d5eceSKris Buschelman EXTERN_C_BEGIN
2877be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
2878be1d678aSKris Buschelman EXTERN PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
287992b32695SKris Buschelman EXTERN_C_END
28805bf65638SKris Buschelman 
288182094794SBarry Smith 
288282094794SBarry Smith EXTERN_C_BEGIN
288382094794SBarry Smith #undef __FUNCT__
288482094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
288582094794SBarry Smith PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_MPIBAIJ_MPIAdj(Mat B, const MatType newtype,MatReuse reuse,Mat *adj)
288682094794SBarry Smith {
288782094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
288882094794SBarry Smith   PetscErrorCode ierr;
288982094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
289082094794SBarry Smith   PetscInt       M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
289182094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
289282094794SBarry Smith 
289382094794SBarry Smith   PetscFunctionBegin;
289482094794SBarry Smith   ierr = PetscMalloc((M+1)*sizeof(PetscInt),&ii);CHKERRQ(ierr);
289582094794SBarry Smith   ii[0] = 0;
289682094794SBarry Smith   CHKMEMQ;
289782094794SBarry Smith   for (i=0; i<M; i++) {
289882094794SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
289982094794SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
290082094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
290182094794SBarry Smith     /* remove one from count of matrix has diagonal */
290282094794SBarry Smith     for (j=id[i]; j<id[i+1]; j++) {
290382094794SBarry Smith       if (jd[j] == i) {ii[i+1]--;break;}
290482094794SBarry Smith     }
290582094794SBarry Smith   CHKMEMQ;
290682094794SBarry Smith   }
290782094794SBarry Smith   ierr = PetscMalloc(ii[M]*sizeof(PetscInt),&jj);CHKERRQ(ierr);
290882094794SBarry Smith   cnt = 0;
290982094794SBarry Smith   for (i=0; i<M; i++) {
291082094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
291182094794SBarry Smith       if (garray[jo[j]] > rstart) break;
291282094794SBarry Smith       jj[cnt++] = garray[jo[j]];
291382094794SBarry Smith   CHKMEMQ;
291482094794SBarry Smith     }
291582094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
291682094794SBarry Smith       if (jd[k] != i) {
291782094794SBarry Smith         jj[cnt++] = rstart + jd[k];
291882094794SBarry Smith   CHKMEMQ;
291982094794SBarry Smith       }
292082094794SBarry Smith     }
292182094794SBarry Smith     for (;j<io[i+1]; j++) {
292282094794SBarry Smith       jj[cnt++] = garray[jo[j]];
292382094794SBarry Smith   CHKMEMQ;
292482094794SBarry Smith     }
292582094794SBarry Smith   }
292682094794SBarry Smith   ierr = MatCreateMPIAdj(((PetscObject)B)->comm,M,B->cmap->N/B->rmap->bs,ii,jj,PETSC_NULL,adj);CHKERRQ(ierr);
292782094794SBarry Smith   PetscFunctionReturn(0);
292882094794SBarry Smith }
2929dbf0e21dSBarry Smith EXTERN_C_END
293082094794SBarry Smith 
29310bad9183SKris Buschelman /*MC
2932fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
29330bad9183SKris Buschelman 
29340bad9183SKris Buschelman    Options Database Keys:
29358c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
29368c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
29378c07d4e3SBarry Smith - -mat_use_hash_table <fact>
29380bad9183SKris Buschelman 
29390bad9183SKris Buschelman   Level: beginner
29400bad9183SKris Buschelman 
29410bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
29420bad9183SKris Buschelman M*/
29430bad9183SKris Buschelman 
294492b32695SKris Buschelman EXTERN_C_BEGIN
2945a23d5eceSKris Buschelman #undef __FUNCT__
29464a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
2947be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MPIBAIJ(Mat B)
2948273d9f13SBarry Smith {
2949273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
2950dfbe8321SBarry Smith   PetscErrorCode ierr;
2951273d9f13SBarry Smith   PetscTruth     flg;
2952273d9f13SBarry Smith 
2953273d9f13SBarry Smith   PetscFunctionBegin;
295438f2d2fdSLisandro Dalcin   ierr = PetscNewLog(B,Mat_MPIBAIJ,&b);CHKERRQ(ierr);
295582502324SSatish Balay   B->data = (void*)b;
295682502324SSatish Balay 
2957085a36d4SBarry Smith 
2958273d9f13SBarry Smith   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2959273d9f13SBarry Smith   B->mapping    = 0;
2960273d9f13SBarry Smith   B->assembled  = PETSC_FALSE;
2961273d9f13SBarry Smith 
2962273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
29637adad957SLisandro Dalcin   ierr = MPI_Comm_rank(((PetscObject)B)->comm,&b->rank);CHKERRQ(ierr);
29647adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)B)->comm,&b->size);CHKERRQ(ierr);
2965273d9f13SBarry Smith 
2966273d9f13SBarry Smith   /* build local table of row and column ownerships */
2967899cda47SBarry Smith   ierr = PetscMalloc((b->size+1)*sizeof(PetscInt),&b->rangebs);CHKERRQ(ierr);
2968273d9f13SBarry Smith 
2969273d9f13SBarry Smith   /* build cache for off array entries formed */
29707adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)B)->comm,1,&B->stash);CHKERRQ(ierr);
2971273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
2972273d9f13SBarry Smith   b->colmap      = PETSC_NULL;
2973273d9f13SBarry Smith   b->garray      = PETSC_NULL;
2974273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2975273d9f13SBarry Smith 
2976273d9f13SBarry Smith   /* stuff used in block assembly */
2977273d9f13SBarry Smith   b->barray       = 0;
2978273d9f13SBarry Smith 
2979273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2980273d9f13SBarry Smith   b->lvec         = 0;
2981273d9f13SBarry Smith   b->Mvctx        = 0;
2982273d9f13SBarry Smith 
2983273d9f13SBarry Smith   /* stuff for MatGetRow() */
2984273d9f13SBarry Smith   b->rowindices   = 0;
2985273d9f13SBarry Smith   b->rowvalues    = 0;
2986273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2987273d9f13SBarry Smith 
2988273d9f13SBarry Smith   /* hash table stuff */
2989273d9f13SBarry Smith   b->ht           = 0;
2990273d9f13SBarry Smith   b->hd           = 0;
2991273d9f13SBarry Smith   b->ht_size      = 0;
2992273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2993273d9f13SBarry Smith   b->ht_fact      = 0;
2994273d9f13SBarry Smith   b->ht_total_ct  = 0;
2995273d9f13SBarry Smith   b->ht_insert_ct = 0;
2996273d9f13SBarry Smith 
29977adad957SLisandro Dalcin   ierr = PetscOptionsBegin(((PetscObject)B)->comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
29988c07d4e3SBarry Smith     ierr = PetscOptionsTruth("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",PETSC_FALSE,&flg,PETSC_NULL);CHKERRQ(ierr);
2999273d9f13SBarry Smith     if (flg) {
3000f6275e2eSBarry Smith       PetscReal fact = 1.39;
30014e0d8c25SBarry Smith       ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
30028c07d4e3SBarry Smith       ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,PETSC_NULL);CHKERRQ(ierr);
3003273d9f13SBarry Smith       if (fact <= 1.0) fact = 1.39;
3004273d9f13SBarry Smith       ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
30051e2582c4SBarry Smith       ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
3006273d9f13SBarry Smith     }
30078c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
30088c07d4e3SBarry Smith 
300982094794SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",
301082094794SBarry Smith                                      "MatConvert_MPIBAIJ_MPIAdj",
301182094794SBarry Smith                                       MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
3012273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatStoreValues_C",
3013273d9f13SBarry Smith                                      "MatStoreValues_MPIBAIJ",
3014273d9f13SBarry Smith                                      MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3015273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatRetrieveValues_C",
3016273d9f13SBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
3017273d9f13SBarry Smith                                      MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3018273d9f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatGetDiagonalBlock_C",
3019273d9f13SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
3020273d9f13SBarry Smith                                      MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3021a23d5eceSKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocation_C",
3022a23d5eceSKris Buschelman                                      "MatMPIBAIJSetPreallocation_MPIBAIJ",
3023a23d5eceSKris Buschelman                                      MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3024aac34f13SBarry Smith   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",
302544ec7894SLisandro Dalcin 				     "MatMPIBAIJSetPreallocationCSR_MPIBAIJ",
3026aac34f13SBarry Smith 				     MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
302792b32695SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatDiagonalScaleLocal_C",
302892b32695SKris Buschelman                                      "MatDiagonalScaleLocal_MPIBAIJ",
302992b32695SKris Buschelman                                      MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
30305bf65638SKris Buschelman   ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatSetHashTableFactor_C",
30315bf65638SKris Buschelman                                      "MatSetHashTableFactor_MPIBAIJ",
30325bf65638SKris Buschelman                                      MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
303317667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
3034273d9f13SBarry Smith   PetscFunctionReturn(0);
3035273d9f13SBarry Smith }
3036273d9f13SBarry Smith EXTERN_C_END
3037273d9f13SBarry Smith 
3038209238afSKris Buschelman /*MC
3039002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3040209238afSKris Buschelman 
3041209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3042209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3043209238afSKris Buschelman 
3044209238afSKris Buschelman    Options Database Keys:
3045209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3046209238afSKris Buschelman 
3047209238afSKris Buschelman   Level: beginner
3048209238afSKris Buschelman 
3049aac34f13SBarry Smith .seealso: MatCreateMPIBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3050209238afSKris Buschelman M*/
3051209238afSKris Buschelman 
3052209238afSKris Buschelman EXTERN_C_BEGIN
3053209238afSKris Buschelman #undef __FUNCT__
3054209238afSKris Buschelman #define __FUNCT__ "MatCreate_BAIJ"
3055be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_BAIJ(Mat A)
3056dfbe8321SBarry Smith {
30576849ba73SBarry Smith   PetscErrorCode ierr;
3058b24ad042SBarry Smith   PetscMPIInt    size;
3059209238afSKris Buschelman 
3060209238afSKris Buschelman   PetscFunctionBegin;
30617adad957SLisandro Dalcin   ierr = MPI_Comm_size(((PetscObject)A)->comm,&size);CHKERRQ(ierr);
3062209238afSKris Buschelman   if (size == 1) {
3063209238afSKris Buschelman     ierr = MatSetType(A,MATSEQBAIJ);CHKERRQ(ierr);
3064209238afSKris Buschelman   } else {
3065209238afSKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
3066209238afSKris Buschelman   }
3067209238afSKris Buschelman   PetscFunctionReturn(0);
3068209238afSKris Buschelman }
3069209238afSKris Buschelman EXTERN_C_END
3070209238afSKris Buschelman 
30714a2ae208SSatish Balay #undef __FUNCT__
30724a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3073273d9f13SBarry Smith /*@C
3074aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3075273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3076273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3077273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3078273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3079273d9f13SBarry Smith 
3080273d9f13SBarry Smith    Collective on Mat
3081273d9f13SBarry Smith 
3082273d9f13SBarry Smith    Input Parameters:
3083273d9f13SBarry Smith +  A - the matrix
3084273d9f13SBarry Smith .  bs   - size of blockk
3085273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3086273d9f13SBarry Smith            submatrix  (same for all local rows)
3087273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3088273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
3089273d9f13SBarry Smith            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
3090273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3091273d9f13SBarry Smith            submatrix (same for all local rows).
3092273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3093273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
3094273d9f13SBarry Smith            each block row) or PETSC_NULL.
3095273d9f13SBarry Smith 
309649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3097273d9f13SBarry Smith 
3098273d9f13SBarry Smith    Options Database Keys:
30998c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
31008c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3101273d9f13SBarry Smith 
3102273d9f13SBarry Smith    Notes:
3103273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3104273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3105273d9f13SBarry Smith 
3106273d9f13SBarry Smith    Storage Information:
3107273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3108273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3109273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3110273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3111273d9f13SBarry Smith 
3112273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3113273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
3114273d9f13SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
3115273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3116273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3117273d9f13SBarry Smith 
3118273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3119273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3120273d9f13SBarry Smith 
3121273d9f13SBarry Smith .vb
3122273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3123273d9f13SBarry Smith           -------------------
3124273d9f13SBarry Smith    row 3  |  o o o d d d o o o o o o
3125273d9f13SBarry Smith    row 4  |  o o o d d d o o o o o o
3126273d9f13SBarry Smith    row 5  |  o o o d d d o o o o o o
3127273d9f13SBarry Smith           -------------------
3128273d9f13SBarry Smith .ve
3129273d9f13SBarry Smith 
3130273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3131273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3132273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3133273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3134273d9f13SBarry Smith 
3135273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3136273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3137273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3138273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3139273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3140273d9f13SBarry Smith    matrices.
3141273d9f13SBarry Smith 
3142aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3143aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3144aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3145aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3146aa95bbe8SBarry Smith 
3147273d9f13SBarry Smith    Level: intermediate
3148273d9f13SBarry Smith 
3149273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3150273d9f13SBarry Smith 
3151aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocationCSR()
3152273d9f13SBarry Smith @*/
3153be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3154273d9f13SBarry Smith {
3155b24ad042SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]);
3156273d9f13SBarry Smith 
3157273d9f13SBarry Smith   PetscFunctionBegin;
3158a23d5eceSKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",(void (**)(void))&f);CHKERRQ(ierr);
3159a23d5eceSKris Buschelman   if (f) {
3160a23d5eceSKris Buschelman     ierr = (*f)(B,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3161273d9f13SBarry Smith   }
3162273d9f13SBarry Smith   PetscFunctionReturn(0);
3163273d9f13SBarry Smith }
3164273d9f13SBarry Smith 
31654a2ae208SSatish Balay #undef __FUNCT__
31664a2ae208SSatish Balay #define __FUNCT__ "MatCreateMPIBAIJ"
316779bdfe76SSatish Balay /*@C
316879bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
316979bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
317079bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
317179bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
317279bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
317379bdfe76SSatish Balay 
3174db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3175db81eaa0SLois Curfman McInnes 
317679bdfe76SSatish Balay    Input Parameters:
3177db81eaa0SLois Curfman McInnes +  comm - MPI communicator
317879bdfe76SSatish Balay .  bs   - size of blockk
317979bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
318092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
318192e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
318292e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
318392e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
318492e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3185be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3186be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
318747a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
318879bdfe76SSatish Balay            submatrix  (same for all local rows)
318947a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
319092e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
3191db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
319247a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
319379bdfe76SSatish Balay            submatrix (same for all local rows).
319447a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
319592e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
319692e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
319779bdfe76SSatish Balay 
319879bdfe76SSatish Balay    Output Parameter:
319979bdfe76SSatish Balay .  A - the matrix
320079bdfe76SSatish Balay 
3201db81eaa0SLois Curfman McInnes    Options Database Keys:
32028c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
32038c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
32043ffaccefSLois Curfman McInnes 
3205175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3206ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3207175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3208175b88e8SBarry Smith 
3209b259b22eSLois Curfman McInnes    Notes:
321049a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
321149a6f317SBarry Smith 
321247a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
321347a75d0bSBarry Smith 
321479bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
321579bdfe76SSatish Balay    (possibly both).
321679bdfe76SSatish Balay 
3217be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3218be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3219be79a94dSBarry Smith 
322079bdfe76SSatish Balay    Storage Information:
322179bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
322279bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
322379bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
322479bdfe76SSatish Balay    local matrix (a rectangular submatrix).
322579bdfe76SSatish Balay 
322679bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
322779bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
322879bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
322979bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
323079bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
323179bdfe76SSatish Balay 
323279bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
323379bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
323479bdfe76SSatish Balay 
3235db81eaa0SLois Curfman McInnes .vb
3236db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3237db81eaa0SLois Curfman McInnes           -------------------
3238db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
3239db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
3240db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
3241db81eaa0SLois Curfman McInnes           -------------------
3242db81eaa0SLois Curfman McInnes .ve
324379bdfe76SSatish Balay 
324479bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
324579bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
324679bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
324757b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
324879bdfe76SSatish Balay 
3249d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3250d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
325179bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
325292e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
325392e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
32546da5968aSLois Curfman McInnes    matrices.
325579bdfe76SSatish Balay 
3256027ccd11SLois Curfman McInnes    Level: intermediate
3257027ccd11SLois Curfman McInnes 
325892e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
325979bdfe76SSatish Balay 
3260aac34f13SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
326179bdfe76SSatish Balay @*/
3262be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMPIBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
326379bdfe76SSatish Balay {
32646849ba73SBarry Smith   PetscErrorCode ierr;
3265b24ad042SBarry Smith   PetscMPIInt    size;
326679bdfe76SSatish Balay 
3267d64ed03dSBarry Smith   PetscFunctionBegin;
3268f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3269f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3270d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3271273d9f13SBarry Smith   if (size > 1) {
3272273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3273273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3274273d9f13SBarry Smith   } else {
3275273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3276273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
32773914022bSBarry Smith   }
32783a40ed3dSBarry Smith   PetscFunctionReturn(0);
327979bdfe76SSatish Balay }
3280026e39d0SSatish Balay 
32814a2ae208SSatish Balay #undef __FUNCT__
32824a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
32836849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
32840ac07820SSatish Balay {
32850ac07820SSatish Balay   Mat            mat;
32860ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3287dfbe8321SBarry Smith   PetscErrorCode ierr;
3288b24ad042SBarry Smith   PetscInt       len=0;
32890ac07820SSatish Balay 
3290d64ed03dSBarry Smith   PetscFunctionBegin;
32910ac07820SSatish Balay   *newmat       = 0;
32927adad957SLisandro Dalcin   ierr = MatCreate(((PetscObject)matin)->comm,&mat);CHKERRQ(ierr);
3293d0f46423SBarry Smith   ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
32947adad957SLisandro Dalcin   ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
32951d5dac46SHong Zhang   ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
32967fff6886SHong Zhang 
32974beb1cfeSHong Zhang   mat->factor       = matin->factor;
3298273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
32990ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
33007fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
33017fff6886SHong Zhang 
3302273d9f13SBarry Smith   a      = (Mat_MPIBAIJ*)mat->data;
3303d0f46423SBarry Smith   mat->rmap->bs  = matin->rmap->bs;
33040ac07820SSatish Balay   a->bs2   = oldmat->bs2;
33050ac07820SSatish Balay   a->mbs   = oldmat->mbs;
33060ac07820SSatish Balay   a->nbs   = oldmat->nbs;
33070ac07820SSatish Balay   a->Mbs   = oldmat->Mbs;
33080ac07820SSatish Balay   a->Nbs   = oldmat->Nbs;
33090ac07820SSatish Balay 
331026283091SBarry Smith   ierr = PetscLayoutCopy(matin->rmap,&mat->rmap);CHKERRQ(ierr);
331126283091SBarry Smith   ierr = PetscLayoutCopy(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3312899cda47SBarry Smith 
33130ac07820SSatish Balay   a->size         = oldmat->size;
33140ac07820SSatish Balay   a->rank         = oldmat->rank;
3315aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3316aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3317aef5e8e0SSatish Balay   a->rowindices   = 0;
33180ac07820SSatish Balay   a->rowvalues    = 0;
33190ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
332030793edcSSatish Balay   a->barray       = 0;
3321899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3322899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3323899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3324899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
33250ac07820SSatish Balay 
3326133cdb44SSatish Balay   /* hash table stuff */
3327133cdb44SSatish Balay   a->ht           = 0;
3328133cdb44SSatish Balay   a->hd           = 0;
3329133cdb44SSatish Balay   a->ht_size      = 0;
3330133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
333125fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3332133cdb44SSatish Balay   a->ht_total_ct  = 0;
3333133cdb44SSatish Balay   a->ht_insert_ct = 0;
3334133cdb44SSatish Balay 
3335899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
33367adad957SLisandro Dalcin   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,1,&mat->stash);CHKERRQ(ierr);
3337d0f46423SBarry Smith   ierr = MatStashCreate_Private(((PetscObject)matin)->comm,matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
33380ac07820SSatish Balay   if (oldmat->colmap) {
3339aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
33400f5bd95cSBarry Smith   ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
334148e59246SSatish Balay #else
3342b24ad042SBarry Smith   ierr = PetscMalloc((a->Nbs)*sizeof(PetscInt),&a->colmap);CHKERRQ(ierr);
334352e6d16bSBarry Smith   ierr = PetscLogObjectMemory(mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3344b24ad042SBarry Smith   ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
334548e59246SSatish Balay #endif
33460ac07820SSatish Balay   } else a->colmap = 0;
33474beb1cfeSHong Zhang 
33480ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3349b24ad042SBarry Smith     ierr = PetscMalloc(len*sizeof(PetscInt),&a->garray);CHKERRQ(ierr);
335052e6d16bSBarry Smith     ierr = PetscLogObjectMemory(mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3351b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
33520ac07820SSatish Balay   } else a->garray = 0;
33530ac07820SSatish Balay 
33540ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
335552e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->lvec);CHKERRQ(ierr);
33560ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
335752e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->Mvctx);CHKERRQ(ierr);
33587fff6886SHong Zhang 
33592e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
336052e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->A);CHKERRQ(ierr);
33612e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
336252e6d16bSBarry Smith   ierr = PetscLogObjectParent(mat,a->B);CHKERRQ(ierr);
33637adad957SLisandro Dalcin   ierr = PetscFListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
33640ac07820SSatish Balay   *newmat = mat;
33654beb1cfeSHong Zhang 
33663a40ed3dSBarry Smith   PetscFunctionReturn(0);
33670ac07820SSatish Balay }
336857b952d6SSatish Balay 
3369e090d566SSatish Balay #include "petscsys.h"
337057b952d6SSatish Balay 
33714a2ae208SSatish Balay #undef __FUNCT__
33724a2ae208SSatish Balay #define __FUNCT__ "MatLoad_MPIBAIJ"
3373a313700dSBarry Smith PetscErrorCode MatLoad_MPIBAIJ(PetscViewer viewer, const MatType type,Mat *newmat)
337457b952d6SSatish Balay {
337557b952d6SSatish Balay   Mat            A;
33766849ba73SBarry Smith   PetscErrorCode ierr;
3377b24ad042SBarry Smith   int            fd;
3378b24ad042SBarry Smith   PetscInt       i,nz,j,rstart,rend;
337987828ca2SBarry Smith   PetscScalar    *vals,*buf;
338057b952d6SSatish Balay   MPI_Comm       comm = ((PetscObject)viewer)->comm;
338157b952d6SSatish Balay   MPI_Status     status;
3382b24ad042SBarry Smith   PetscMPIInt    rank,size,maxnz;
3383b24ad042SBarry Smith   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
3384910ba992SMatthew Knepley   PetscInt       *locrowlens = PETSC_NULL,*procsnz = PETSC_NULL,*browners = PETSC_NULL;
3385167e7480SBarry Smith   PetscInt       jj,*mycols,*ibuf,bs=1,Mbs,mbs,extra_rows,mmax;
3386dc231df0SBarry Smith   PetscMPIInt    tag = ((PetscObject)viewer)->tag;
3387910ba992SMatthew Knepley   PetscInt       *dlens = PETSC_NULL,*odlens = PETSC_NULL,*mask = PETSC_NULL,*masked1 = PETSC_NULL,*masked2 = PETSC_NULL,rowcount,odcount;
3388dc231df0SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
338957b952d6SSatish Balay 
3390d64ed03dSBarry Smith   PetscFunctionBegin;
339177925062SSatish Balay   ierr = PetscOptionsBegin(comm,PETSC_NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
33928c07d4e3SBarry Smith     ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,PETSC_NULL);CHKERRQ(ierr);
33938c07d4e3SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
339457b952d6SSatish Balay 
3395d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3396d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
339757b952d6SSatish Balay   if (!rank) {
3398b0a32e0cSBarry Smith     ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
3399e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
3400552e946dSBarry Smith     if (header[0] != MAT_FILE_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
34016c5fab8fSBarry Smith   }
3402d64ed03dSBarry Smith 
3403b24ad042SBarry Smith   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
340457b952d6SSatish Balay   M = header[1]; N = header[2];
340557b952d6SSatish Balay 
340629bbc08cSBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,"Can only do square matrices");
340757b952d6SSatish Balay 
340857b952d6SSatish Balay   /*
340957b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
341057b952d6SSatish Balay      divisible by the blocksize
341157b952d6SSatish Balay   */
341257b952d6SSatish Balay   Mbs        = M/bs;
3413dc231df0SBarry Smith   extra_rows = bs - M + bs*Mbs;
341457b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
341557b952d6SSatish Balay   else                  Mbs++;
341657b952d6SSatish Balay   if (extra_rows && !rank) {
34171e2582c4SBarry Smith     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
341857b952d6SSatish Balay   }
3419537820f0SBarry Smith 
342057b952d6SSatish Balay   /* determine ownership of all rows */
342157b952d6SSatish Balay   mbs        = Mbs/size + ((Mbs % size) > rank);
342257b952d6SSatish Balay   m          = mbs*bs;
3423dc231df0SBarry Smith   ierr       = PetscMalloc2(size+1,PetscInt,&rowners,size+1,PetscInt,&browners);CHKERRQ(ierr);
3424b24ad042SBarry Smith   ierr       = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
3425167e7480SBarry Smith 
3426167e7480SBarry Smith   /* process 0 needs enough room for process with most rows */
3427167e7480SBarry Smith   if (!rank) {
3428167e7480SBarry Smith     mmax = rowners[1];
3429167e7480SBarry Smith     for (i=2; i<size; i++) {
3430167e7480SBarry Smith       mmax = PetscMax(mmax,rowners[i]);
3431167e7480SBarry Smith     }
3432ca02efcfSSatish Balay     mmax*=bs;
3433167e7480SBarry Smith   } else mmax = m;
3434167e7480SBarry Smith 
343557b952d6SSatish Balay   rowners[0] = 0;
3436cee3aa6bSSatish Balay   for (i=2; i<=size; i++)  rowners[i] += rowners[i-1];
3437cee3aa6bSSatish Balay   for (i=0; i<=size;  i++) browners[i] = rowners[i]*bs;
343857b952d6SSatish Balay   rstart = rowners[rank];
343957b952d6SSatish Balay   rend   = rowners[rank+1];
344057b952d6SSatish Balay 
344157b952d6SSatish Balay   /* distribute row lengths to all processors */
344219c38ff2SBarry Smith   ierr = PetscMalloc((mmax+1)*sizeof(PetscInt),&locrowlens);CHKERRQ(ierr);
344357b952d6SSatish Balay   if (!rank) {
3444dc231df0SBarry Smith     mend = m;
3445dc231df0SBarry Smith     if (size == 1) mend = mend - extra_rows;
3446dc231df0SBarry Smith     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
3447dc231df0SBarry Smith     for (j=mend; j<m; j++) locrowlens[j] = 1;
3448dc231df0SBarry Smith     ierr = PetscMalloc(m*sizeof(PetscInt),&rowlengths);CHKERRQ(ierr);
3449b24ad042SBarry Smith     ierr = PetscMalloc(size*sizeof(PetscInt),&procsnz);CHKERRQ(ierr);
3450b24ad042SBarry Smith     ierr = PetscMemzero(procsnz,size*sizeof(PetscInt));CHKERRQ(ierr);
3451dc231df0SBarry Smith     for (j=0; j<m; j++) {
3452dc231df0SBarry Smith       procsnz[0] += locrowlens[j];
3453dc231df0SBarry Smith     }
3454dc231df0SBarry Smith     for (i=1; i<size; i++) {
3455dc231df0SBarry Smith       mend = browners[i+1] - browners[i];
3456dc231df0SBarry Smith       if (i == size-1) mend = mend - extra_rows;
3457dc231df0SBarry Smith       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
3458dc231df0SBarry Smith       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
3459dc231df0SBarry Smith       /* calculate the number of nonzeros on each processor */
3460dc231df0SBarry Smith       for (j=0; j<browners[i+1]-browners[i]; j++) {
346157b952d6SSatish Balay         procsnz[i] += rowlengths[j];
346257b952d6SSatish Balay       }
3463dc231df0SBarry Smith       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
346457b952d6SSatish Balay     }
3465606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
3466dc231df0SBarry Smith   } else {
3467dc231df0SBarry Smith     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3468dc231df0SBarry Smith   }
346957b952d6SSatish Balay 
3470dc231df0SBarry Smith   if (!rank) {
347157b952d6SSatish Balay     /* determine max buffer needed and allocate it */
34728a8e0b3aSBarry Smith     maxnz = procsnz[0];
3473cdc0ba36SBarry Smith     for (i=1; i<size; i++) {
347457b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
347557b952d6SSatish Balay     }
3476b24ad042SBarry Smith     ierr = PetscMalloc(maxnz*sizeof(PetscInt),&cols);CHKERRQ(ierr);
347757b952d6SSatish Balay 
347857b952d6SSatish Balay     /* read in my part of the matrix column indices  */
347957b952d6SSatish Balay     nz     = procsnz[0];
348019c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
348157b952d6SSatish Balay     mycols = ibuf;
3482cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3483e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
3484cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
3485cee3aa6bSSatish Balay 
348657b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
348757b952d6SSatish Balay     for (i=1; i<size-1; i++) {
348857b952d6SSatish Balay       nz   = procsnz[i];
3489e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
3490b24ad042SBarry Smith       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
349157b952d6SSatish Balay     }
349257b952d6SSatish Balay     /* read in the stuff for the last proc */
349357b952d6SSatish Balay     if (size != 1) {
349457b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
3495e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
349657b952d6SSatish Balay       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
3497b24ad042SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
349857b952d6SSatish Balay     }
3499606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
3500d64ed03dSBarry Smith   } else {
350157b952d6SSatish Balay     /* determine buffer space needed for message */
350257b952d6SSatish Balay     nz = 0;
350357b952d6SSatish Balay     for (i=0; i<m; i++) {
350457b952d6SSatish Balay       nz += locrowlens[i];
350557b952d6SSatish Balay     }
350619c38ff2SBarry Smith     ierr   = PetscMalloc((nz+1)*sizeof(PetscInt),&ibuf);CHKERRQ(ierr);
350757b952d6SSatish Balay     mycols = ibuf;
350857b952d6SSatish Balay     /* receive message of column indices*/
3509b24ad042SBarry Smith     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
3510b24ad042SBarry Smith     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
351129bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
351257b952d6SSatish Balay   }
351357b952d6SSatish Balay 
351457b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
3515dc231df0SBarry Smith   ierr     = PetscMalloc2(rend-rstart,PetscInt,&dlens,rend-rstart,PetscInt,&odlens);CHKERRQ(ierr);
3516dc231df0SBarry Smith   ierr     = PetscMalloc3(Mbs,PetscInt,&mask,Mbs,PetscInt,&masked1,Mbs,PetscInt,&masked2);CHKERRQ(ierr);
3517dc231df0SBarry Smith   ierr     = PetscMemzero(mask,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3518dc231df0SBarry Smith   ierr     = PetscMemzero(masked1,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
3519dc231df0SBarry Smith   ierr     = PetscMemzero(masked2,Mbs*sizeof(PetscInt));CHKERRQ(ierr);
352057b952d6SSatish Balay   rowcount = 0; nzcount = 0;
352157b952d6SSatish Balay   for (i=0; i<mbs; i++) {
352257b952d6SSatish Balay     dcount  = 0;
352357b952d6SSatish Balay     odcount = 0;
352457b952d6SSatish Balay     for (j=0; j<bs; j++) {
352557b952d6SSatish Balay       kmax = locrowlens[rowcount];
352657b952d6SSatish Balay       for (k=0; k<kmax; k++) {
352757b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
352857b952d6SSatish Balay         if (!mask[tmp]) {
352957b952d6SSatish Balay           mask[tmp] = 1;
353057b952d6SSatish Balay           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
353157b952d6SSatish Balay           else masked1[dcount++] = tmp;
353257b952d6SSatish Balay         }
353357b952d6SSatish Balay       }
353457b952d6SSatish Balay       rowcount++;
353557b952d6SSatish Balay     }
3536cee3aa6bSSatish Balay 
353757b952d6SSatish Balay     dlens[i]  = dcount;
353857b952d6SSatish Balay     odlens[i] = odcount;
3539cee3aa6bSSatish Balay 
354057b952d6SSatish Balay     /* zero out the mask elements we set */
354157b952d6SSatish Balay     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
354257b952d6SSatish Balay     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
354357b952d6SSatish Balay   }
3544cee3aa6bSSatish Balay 
354557b952d6SSatish Balay   /* create our matrix */
3546f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,&A);CHKERRQ(ierr);
3547f69a0ea3SMatthew Knepley   ierr = MatSetSizes(A,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
354878ae41b4SKris Buschelman   ierr = MatSetType(A,type);CHKERRQ(ierr)
354978ae41b4SKris Buschelman   ierr = MatMPIBAIJSetPreallocation(A,bs,0,dlens,0,odlens);CHKERRQ(ierr);
355078ae41b4SKris Buschelman 
355157b952d6SSatish Balay   if (!rank) {
355219c38ff2SBarry Smith     ierr = PetscMalloc((maxnz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
355357b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
355457b952d6SSatish Balay     nz = procsnz[0];
355557b952d6SSatish Balay     vals = buf;
3556cee3aa6bSSatish Balay     mycols = ibuf;
3557cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
3558e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3559cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
3560537820f0SBarry Smith 
356157b952d6SSatish Balay     /* insert into matrix */
356257b952d6SSatish Balay     jj      = rstart*bs;
356357b952d6SSatish Balay     for (i=0; i<m; i++) {
3564dc231df0SBarry Smith       ierr = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
356557b952d6SSatish Balay       mycols += locrowlens[i];
356657b952d6SSatish Balay       vals   += locrowlens[i];
356757b952d6SSatish Balay       jj++;
356857b952d6SSatish Balay     }
356957b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
357057b952d6SSatish Balay     for (i=1; i<size-1; i++) {
357157b952d6SSatish Balay       nz   = procsnz[i];
357257b952d6SSatish Balay       vals = buf;
3573e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
35747adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
357557b952d6SSatish Balay     }
357657b952d6SSatish Balay     /* the last proc */
357757b952d6SSatish Balay     if (size != 1){
357857b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
3579cee3aa6bSSatish Balay       vals = buf;
3580e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
358157b952d6SSatish Balay       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
35827adad957SLisandro Dalcin       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)A)->tag,comm);CHKERRQ(ierr);
358357b952d6SSatish Balay     }
3584606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
3585d64ed03dSBarry Smith   } else {
358657b952d6SSatish Balay     /* receive numeric values */
358719c38ff2SBarry Smith     ierr = PetscMalloc((nz+1)*sizeof(PetscScalar),&buf);CHKERRQ(ierr);
358857b952d6SSatish Balay 
358957b952d6SSatish Balay     /* receive message of values*/
359057b952d6SSatish Balay     vals   = buf;
3591cee3aa6bSSatish Balay     mycols = ibuf;
35927adad957SLisandro Dalcin     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)A)->tag,comm,&status);CHKERRQ(ierr);
3593ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
359429bbc08cSBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
359557b952d6SSatish Balay 
359657b952d6SSatish Balay     /* insert into matrix */
359757b952d6SSatish Balay     jj      = rstart*bs;
3598cee3aa6bSSatish Balay     for (i=0; i<m; i++) {
3599dc231df0SBarry Smith       ierr    = MatSetValues_MPIBAIJ(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
360057b952d6SSatish Balay       mycols += locrowlens[i];
360157b952d6SSatish Balay       vals   += locrowlens[i];
360257b952d6SSatish Balay       jj++;
360357b952d6SSatish Balay     }
360457b952d6SSatish Balay   }
3605606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
3606606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
3607606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
3608dc231df0SBarry Smith   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
3609dc231df0SBarry Smith   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
3610dc231df0SBarry Smith   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
36116d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
36126d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
361378ae41b4SKris Buschelman 
361478ae41b4SKris Buschelman   *newmat = A;
36153a40ed3dSBarry Smith   PetscFunctionReturn(0);
361657b952d6SSatish Balay }
361757b952d6SSatish Balay 
36184a2ae208SSatish Balay #undef __FUNCT__
36194a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3620133cdb44SSatish Balay /*@
3621133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3622133cdb44SSatish Balay 
3623133cdb44SSatish Balay    Input Parameters:
3624133cdb44SSatish Balay .  mat  - the matrix
3625133cdb44SSatish Balay .  fact - factor
3626133cdb44SSatish Balay 
3627fee21e36SBarry Smith    Collective on Mat
3628fee21e36SBarry Smith 
36298c890885SBarry Smith    Level: advanced
36308c890885SBarry Smith 
3631133cdb44SSatish Balay   Notes:
36328c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3633133cdb44SSatish Balay 
3634133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3635133cdb44SSatish Balay 
3636133cdb44SSatish Balay .seealso: MatSetOption()
3637133cdb44SSatish Balay @*/
3638be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3639133cdb44SSatish Balay {
3640dfbe8321SBarry Smith   PetscErrorCode ierr,(*f)(Mat,PetscReal);
36415bf65638SKris Buschelman 
36425bf65638SKris Buschelman   PetscFunctionBegin;
36435bf65638SKris Buschelman   ierr = PetscObjectQueryFunction((PetscObject)mat,"MatSetHashTableFactor_C",(void (**)(void))&f);CHKERRQ(ierr);
36445bf65638SKris Buschelman   if (f) {
36455bf65638SKris Buschelman     ierr = (*f)(mat,fact);CHKERRQ(ierr);
36465bf65638SKris Buschelman   }
36475bf65638SKris Buschelman   PetscFunctionReturn(0);
36485bf65638SKris Buschelman }
36495bf65638SKris Buschelman 
3650be1d678aSKris Buschelman EXTERN_C_BEGIN
36515bf65638SKris Buschelman #undef __FUNCT__
36525bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
3653be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
36545bf65638SKris Buschelman {
365525fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3656133cdb44SSatish Balay 
3657133cdb44SSatish Balay   PetscFunctionBegin;
3658133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*)mat->data;
3659133cdb44SSatish Balay   baij->ht_fact = fact;
3660133cdb44SSatish Balay   PetscFunctionReturn(0);
3661133cdb44SSatish Balay }
3662be1d678aSKris Buschelman EXTERN_C_END
3663f2a5309cSSatish Balay 
36644a2ae208SSatish Balay #undef __FUNCT__
36654a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
3666be1d678aSKris Buschelman PetscErrorCode PETSCMAT_DLLEXPORT MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,PetscInt *colmap[])
3667f2a5309cSSatish Balay {
3668f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3669f2a5309cSSatish Balay   PetscFunctionBegin;
3670f2a5309cSSatish Balay   *Ad     = a->A;
3671f2a5309cSSatish Balay   *Ao     = a->B;
3672195d93cdSBarry Smith   *colmap = a->garray;
3673f2a5309cSSatish Balay   PetscFunctionReturn(0);
3674f2a5309cSSatish Balay }
367585535b8eSBarry Smith 
367685535b8eSBarry Smith /*
367785535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
367885535b8eSBarry Smith */
367985535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
368085535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
368185535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
368285535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
368385535b8eSBarry Smith #endif
368485535b8eSBarry Smith 
368585535b8eSBarry Smith #undef __FUNCT__
368685535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
368785535b8eSBarry Smith /*@C
368885535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
368985535b8eSBarry Smith 
369085535b8eSBarry Smith   Collective on Mat
369185535b8eSBarry Smith 
369285535b8eSBarry Smith   Input Parameters:
369385535b8eSBarry Smith + mat - the matrix
369485535b8eSBarry Smith . min - number of input rows
369585535b8eSBarry Smith . im - input rows
369685535b8eSBarry Smith . nin - number of input columns
369785535b8eSBarry Smith . in - input columns
369885535b8eSBarry Smith . v - numerical values input
369985535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
370085535b8eSBarry Smith 
370185535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
370285535b8eSBarry Smith 
370385535b8eSBarry Smith   Level: advanced
370485535b8eSBarry Smith 
370585535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
370685535b8eSBarry Smith @*/
370785535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
370885535b8eSBarry Smith {
370985535b8eSBarry Smith   /* convert input arguments to C version */
371085535b8eSBarry Smith   Mat             mat = *matin;
371185535b8eSBarry Smith   PetscInt        m = *min, n = *nin;
371285535b8eSBarry Smith   InsertMode      addv = *addvin;
371385535b8eSBarry Smith 
371485535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
371585535b8eSBarry Smith   const MatScalar *value;
371685535b8eSBarry Smith   MatScalar       *barray=baij->barray;
371785535b8eSBarry Smith   PetscTruth      roworiented = baij->roworiented;
371885535b8eSBarry Smith   PetscErrorCode  ierr;
371985535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
372085535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3721d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
372285535b8eSBarry Smith 
372385535b8eSBarry Smith   PetscFunctionBegin;
372485535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
372585535b8eSBarry Smith   if (mat->insertmode == NOT_SET_VALUES) {
372685535b8eSBarry Smith     mat->insertmode = addv;
372785535b8eSBarry Smith   }
372885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
372985535b8eSBarry Smith   else if (mat->insertmode != addv) {
373085535b8eSBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
373185535b8eSBarry Smith   }
373285535b8eSBarry Smith   if (mat->factor) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
373385535b8eSBarry Smith #endif
373485535b8eSBarry Smith   if (mat->assembled) {
373585535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
373685535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
373785535b8eSBarry Smith   }
373885535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
373985535b8eSBarry Smith 
374085535b8eSBarry Smith 
374185535b8eSBarry Smith   if(!barray) {
374285535b8eSBarry Smith     ierr         = PetscMalloc(bs2*sizeof(MatScalar),&barray);CHKERRQ(ierr);
374385535b8eSBarry Smith     baij->barray = barray;
374485535b8eSBarry Smith   }
374585535b8eSBarry Smith 
374685535b8eSBarry Smith   if (roworiented) {
374785535b8eSBarry Smith     stepval = (n-1)*bs;
374885535b8eSBarry Smith   } else {
374985535b8eSBarry Smith     stepval = (m-1)*bs;
375085535b8eSBarry Smith   }
375185535b8eSBarry Smith   for (i=0; i<m; i++) {
375285535b8eSBarry Smith     if (im[i] < 0) continue;
375385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
375485535b8eSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
375585535b8eSBarry Smith #endif
375685535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
375785535b8eSBarry Smith       row = im[i] - rstart;
375885535b8eSBarry Smith       for (j=0; j<n; j++) {
375985535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
376085535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
376185535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
376285535b8eSBarry Smith         } else if((!roworiented) && (m == 1)) {
376385535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
376485535b8eSBarry Smith         } else { /* Here a copy is required */
376585535b8eSBarry Smith           if (roworiented) {
376685535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
376785535b8eSBarry Smith           } else {
376885535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
376985535b8eSBarry Smith           }
377085535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
377185535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
377285535b8eSBarry Smith               *barray++  = *value++;
377385535b8eSBarry Smith             }
377485535b8eSBarry Smith           }
377585535b8eSBarry Smith           barray -=bs2;
377685535b8eSBarry Smith         }
377785535b8eSBarry Smith 
377885535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend){
377985535b8eSBarry Smith           col  = in[j] - cstart;
378097e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
378185535b8eSBarry Smith         }
378285535b8eSBarry Smith         else if (in[j] < 0) continue;
378385535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
378485535b8eSBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);}
378585535b8eSBarry Smith #endif
378685535b8eSBarry Smith         else {
378785535b8eSBarry Smith           if (mat->was_assembled) {
378885535b8eSBarry Smith             if (!baij->colmap) {
378985535b8eSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
379085535b8eSBarry Smith             }
379185535b8eSBarry Smith 
379285535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
379385535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
379485535b8eSBarry Smith             { PetscInt data;
379585535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
379685535b8eSBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
379785535b8eSBarry Smith             }
379885535b8eSBarry Smith #else
379985535b8eSBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_ERR_PLIB,"Incorrect colmap");
380085535b8eSBarry Smith #endif
380185535b8eSBarry Smith #endif
380285535b8eSBarry Smith #if defined (PETSC_USE_CTABLE)
380385535b8eSBarry Smith 	    ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
380485535b8eSBarry Smith             col  = (col - 1)/bs;
380585535b8eSBarry Smith #else
380685535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
380785535b8eSBarry Smith #endif
380885535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
380985535b8eSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
381085535b8eSBarry Smith               col =  in[j];
381185535b8eSBarry Smith             }
381285535b8eSBarry Smith           }
381385535b8eSBarry Smith           else col = in[j];
381497e5c40aSBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
381585535b8eSBarry Smith         }
381685535b8eSBarry Smith       }
381785535b8eSBarry Smith     } else {
381885535b8eSBarry Smith       if (!baij->donotstash) {
381985535b8eSBarry Smith         if (roworiented) {
382085535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
382185535b8eSBarry Smith         } else {
382285535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
382385535b8eSBarry Smith         }
382485535b8eSBarry Smith       }
382585535b8eSBarry Smith     }
382685535b8eSBarry Smith   }
382785535b8eSBarry Smith 
382885535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
382985535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
383085535b8eSBarry Smith   PetscFunctionReturn(0);
383185535b8eSBarry Smith }
3832