1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER 2*454a90a3SBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.178 1999/09/21 14:41:06 bsmith Exp bsmith $"; 379bdfe76SSatish Balay #endif 479bdfe76SSatish Balay 577ed5343SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h" /*I "mat.h" I*/ 6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h" 779bdfe76SSatish Balay 857b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat); 957b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat); 10d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int); 117b2a1423SBarry Smith extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **); 12946de2abSSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *); 13bbb85fb3SSatish Balay extern int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode); 14bbb85fb3SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode); 15bbb85fb3SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 16bbb85fb3SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**); 17bbb85fb3SSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat); 183b2fbd54SBarry Smith 197fc3c18eSBarry Smith EXTERN_C_BEGIN 207fc3c18eSBarry Smith #undef __FUNC__ 217fc3c18eSBarry Smith #define __FUNC__ "MatStoreValues_MPIBAIJ" 227fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat) 237fc3c18eSBarry Smith { 247fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 257fc3c18eSBarry Smith int ierr; 267fc3c18eSBarry Smith 277fc3c18eSBarry Smith PetscFunctionBegin; 287fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 297fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 307fc3c18eSBarry Smith PetscFunctionReturn(0); 317fc3c18eSBarry Smith } 327fc3c18eSBarry Smith EXTERN_C_END 337fc3c18eSBarry Smith 347fc3c18eSBarry Smith EXTERN_C_BEGIN 357fc3c18eSBarry Smith #undef __FUNC__ 367fc3c18eSBarry Smith #define __FUNC__ "MatRetrieveValues_MPIBAIJ" 377fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat) 387fc3c18eSBarry Smith { 397fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 407fc3c18eSBarry Smith int ierr; 417fc3c18eSBarry Smith 427fc3c18eSBarry Smith PetscFunctionBegin; 437fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 447fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 457fc3c18eSBarry Smith PetscFunctionReturn(0); 467fc3c18eSBarry Smith } 477fc3c18eSBarry Smith EXTERN_C_END 487fc3c18eSBarry Smith 49537820f0SBarry Smith /* 50537820f0SBarry Smith Local utility routine that creates a mapping from the global column 5157b952d6SSatish Balay number to the local number in the off-diagonal part of the local 5257b952d6SSatish Balay storage of the matrix. This is done in a non scable way since the 5357b952d6SSatish Balay length of colmap equals the global matrix length. 5457b952d6SSatish Balay */ 555615d1e5SSatish Balay #undef __FUNC__ 565615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private" 5757b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat) 5857b952d6SSatish Balay { 5957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 6057b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data; 61dc2900e9SSatish Balay int nbs = B->nbs,i,bs=B->bs,ierr; 6257b952d6SSatish Balay 63d64ed03dSBarry Smith PetscFunctionBegin; 64aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 65fa46199cSSatish Balay ierr = TableCreate(baij->nbs/5,&baij->colmap);CHKERRQ(ierr); 6648e59246SSatish Balay for ( i=0; i<nbs; i++ ){ 6748e59246SSatish Balay ierr = TableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr); 6848e59246SSatish Balay } 6948e59246SSatish Balay #else 70758f045eSSatish Balay baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap); 7157b952d6SSatish Balay PLogObjectMemory(mat,baij->Nbs*sizeof(int)); 72549d3d68SSatish Balay ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr); 73928fc39bSSatish Balay for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1; 7448e59246SSatish Balay #endif 753a40ed3dSBarry Smith PetscFunctionReturn(0); 7657b952d6SSatish Balay } 7757b952d6SSatish Balay 7880c1aa95SSatish Balay #define CHUNKSIZE 10 7980c1aa95SSatish Balay 80f5e9677aSSatish Balay #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \ 8180c1aa95SSatish Balay { \ 8280c1aa95SSatish Balay \ 8380c1aa95SSatish Balay brow = row/bs; \ 8480c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 85ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 8680c1aa95SSatish Balay bcol = col/bs; \ 8780c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 88ab26458aSBarry Smith low = 0; high = nrow; \ 89ab26458aSBarry Smith while (high-low > 3) { \ 90ab26458aSBarry Smith t = (low+high)/2; \ 91ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 92ab26458aSBarry Smith else low = t; \ 93ab26458aSBarry Smith } \ 94ab26458aSBarry Smith for ( _i=low; _i<high; _i++ ) { \ 9580c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 9680c1aa95SSatish Balay if (rp[_i] == bcol) { \ 9780c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 98eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 99eada6651SSatish Balay else *bap = value; \ 100ac7a638eSSatish Balay goto a_noinsert; \ 10180c1aa95SSatish Balay } \ 10280c1aa95SSatish Balay } \ 10389280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 104a8c6a408SBarry Smith else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 10580c1aa95SSatish Balay if (nrow >= rmax) { \ 10680c1aa95SSatish Balay /* there is no extra room in row, therefore enlarge */ \ 10780c1aa95SSatish Balay int new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 10880c1aa95SSatish Balay Scalar *new_a; \ 10980c1aa95SSatish Balay \ 110a8c6a408SBarry Smith if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 11189280ab3SLois Curfman McInnes \ 11280c1aa95SSatish Balay /* malloc new storage space */ \ 11380c1aa95SSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \ 11480c1aa95SSatish Balay new_a = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \ 11580c1aa95SSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 11680c1aa95SSatish Balay new_i = new_j + new_nz; \ 11780c1aa95SSatish Balay \ 11880c1aa95SSatish Balay /* copy over old data into new slots */ \ 11980c1aa95SSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \ 12080c1aa95SSatish Balay for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \ 121549d3d68SSatish Balay ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 12280c1aa95SSatish Balay len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \ 123549d3d68SSatish Balay ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \ 124549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 125549d3d68SSatish Balay ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \ 126549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 127549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \ 128549d3d68SSatish Balay aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr); \ 12980c1aa95SSatish Balay /* free up old matrix storage */ \ 130606d414cSSatish Balay ierr = PetscFree(a->a);CHKERRQ(ierr); \ 131606d414cSSatish Balay if (!a->singlemalloc) { \ 132606d414cSSatish Balay ierr = PetscFree(a->i);CHKERRQ(ierr); \ 133606d414cSSatish Balay ierr = PetscFree(a->j);CHKERRQ(ierr);\ 134606d414cSSatish Balay } \ 13580c1aa95SSatish Balay aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j; \ 13680c1aa95SSatish Balay a->singlemalloc = 1; \ 13780c1aa95SSatish Balay \ 13880c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 139ac7a638eSSatish Balay rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \ 14080c1aa95SSatish Balay PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 14180c1aa95SSatish Balay a->maxnz += bs2*CHUNKSIZE; \ 14280c1aa95SSatish Balay a->reallocs++; \ 14380c1aa95SSatish Balay a->nz++; \ 14480c1aa95SSatish Balay } \ 14580c1aa95SSatish Balay N = nrow++ - 1; \ 14680c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 14780c1aa95SSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 14880c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 149549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \ 15080c1aa95SSatish Balay } \ 151549d3d68SSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr); } \ 15280c1aa95SSatish Balay rp[_i] = bcol; \ 15380c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 154ac7a638eSSatish Balay a_noinsert:; \ 15580c1aa95SSatish Balay ailen[brow] = nrow; \ 15680c1aa95SSatish Balay } 15757b952d6SSatish Balay 158ac7a638eSSatish Balay #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \ 159ac7a638eSSatish Balay { \ 160ac7a638eSSatish Balay \ 161ac7a638eSSatish Balay brow = row/bs; \ 162ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 163ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 164ac7a638eSSatish Balay bcol = col/bs; \ 165ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 166ac7a638eSSatish Balay low = 0; high = nrow; \ 167ac7a638eSSatish Balay while (high-low > 3) { \ 168ac7a638eSSatish Balay t = (low+high)/2; \ 169ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 170ac7a638eSSatish Balay else low = t; \ 171ac7a638eSSatish Balay } \ 172ac7a638eSSatish Balay for ( _i=low; _i<high; _i++ ) { \ 173ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 174ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 175ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 176ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 177ac7a638eSSatish Balay else *bap = value; \ 178ac7a638eSSatish Balay goto b_noinsert; \ 179ac7a638eSSatish Balay } \ 180ac7a638eSSatish Balay } \ 18189280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 182a8c6a408SBarry Smith else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \ 183ac7a638eSSatish Balay if (nrow >= rmax) { \ 184ac7a638eSSatish Balay /* there is no extra room in row, therefore enlarge */ \ 18574c639caSSatish Balay int new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \ 186ac7a638eSSatish Balay Scalar *new_a; \ 187ac7a638eSSatish Balay \ 188a8c6a408SBarry Smith if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \ 18989280ab3SLois Curfman McInnes \ 190ac7a638eSSatish Balay /* malloc new storage space */ \ 19174c639caSSatish Balay len = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \ 192ac7a638eSSatish Balay new_a = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \ 193ac7a638eSSatish Balay new_j = (int *) (new_a + bs2*new_nz); \ 194ac7a638eSSatish Balay new_i = new_j + new_nz; \ 195ac7a638eSSatish Balay \ 196ac7a638eSSatish Balay /* copy over old data into new slots */ \ 197ac7a638eSSatish Balay for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \ 19874c639caSSatish Balay for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \ 199549d3d68SSatish Balay ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \ 200ac7a638eSSatish Balay len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \ 201549d3d68SSatish Balay ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \ 202549d3d68SSatish Balay len*sizeof(int));CHKERRQ(ierr); \ 203549d3d68SSatish Balay ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \ 204549d3d68SSatish Balay ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \ 205549d3d68SSatish Balay ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \ 206549d3d68SSatish Balay ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr); \ 207ac7a638eSSatish Balay /* free up old matrix storage */ \ 208606d414cSSatish Balay ierr = PetscFree(b->a);CHKERRQ(ierr); \ 209606d414cSSatish Balay if (!b->singlemalloc) { \ 210606d414cSSatish Balay ierr = PetscFree(b->i);CHKERRQ(ierr); \ 211606d414cSSatish Balay ierr = PetscFree(b->j);CHKERRQ(ierr); \ 212606d414cSSatish Balay } \ 21374c639caSSatish Balay ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j; \ 21474c639caSSatish Balay b->singlemalloc = 1; \ 215ac7a638eSSatish Balay \ 216ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 217ac7a638eSSatish Balay rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \ 21874c639caSSatish Balay PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \ 21974c639caSSatish Balay b->maxnz += bs2*CHUNKSIZE; \ 22074c639caSSatish Balay b->reallocs++; \ 22174c639caSSatish Balay b->nz++; \ 222ac7a638eSSatish Balay } \ 223ac7a638eSSatish Balay N = nrow++ - 1; \ 224ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 225ac7a638eSSatish Balay for ( ii=N; ii>=_i; ii-- ) { \ 226ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 227549d3d68SSatish Balay ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \ 228ac7a638eSSatish Balay } \ 229549d3d68SSatish Balay if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr);} \ 230ac7a638eSSatish Balay rp[_i] = bcol; \ 231ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 232ac7a638eSSatish Balay b_noinsert:; \ 233ac7a638eSSatish Balay bilen[brow] = nrow; \ 234ac7a638eSSatish Balay } 235ac7a638eSSatish Balay 2365615d1e5SSatish Balay #undef __FUNC__ 2375615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ" 238ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 23957b952d6SSatish Balay { 24057b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 24157b952d6SSatish Balay Scalar value; 2424fa0d573SSatish Balay int ierr,i,j,row,col; 2434fa0d573SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 2444fa0d573SSatish Balay int rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs; 2454fa0d573SSatish Balay int cend_orig=baij->cend_bs,bs=baij->bs; 24657b952d6SSatish Balay 247eada6651SSatish Balay /* Some Variables required in the macro */ 24880c1aa95SSatish Balay Mat A = baij->A; 24980c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data; 250ac7a638eSSatish Balay int *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 251ac7a638eSSatish Balay Scalar *aa=a->a; 252ac7a638eSSatish Balay 253ac7a638eSSatish Balay Mat B = baij->B; 254ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data; 255ac7a638eSSatish Balay int *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 256ac7a638eSSatish Balay Scalar *ba=b->a; 257ac7a638eSSatish Balay 258ac7a638eSSatish Balay int *rp,ii,nrow,_i,rmax,N,brow,bcol; 259ab26458aSBarry Smith int low,high,t,ridx,cidx,bs2=a->bs2; 260ac7a638eSSatish Balay Scalar *ap,*bap; 26180c1aa95SSatish Balay 262d64ed03dSBarry Smith PetscFunctionBegin; 26357b952d6SSatish Balay for ( i=0; i<m; i++ ) { 2645ef9f2a5SBarry Smith if (im[i] < 0) continue; 265aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 266a8c6a408SBarry Smith if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 267639f9d9dSBarry Smith #endif 26857b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 26957b952d6SSatish Balay row = im[i] - rstart_orig; 27057b952d6SSatish Balay for ( j=0; j<n; j++ ) { 27157b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig){ 27257b952d6SSatish Balay col = in[j] - cstart_orig; 27357b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 274f5e9677aSSatish Balay MatSetValues_SeqBAIJ_A_Private(row,col,value,addv); 27580c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 27673959e64SBarry Smith } else if (in[j] < 0) continue; 277aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 278a8c6a408SBarry Smith else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");} 279639f9d9dSBarry Smith #endif 28057b952d6SSatish Balay else { 28157b952d6SSatish Balay if (mat->was_assembled) { 282905e6a2fSBarry Smith if (!baij->colmap) { 283905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 284905e6a2fSBarry Smith } 285aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 286fa46199cSSatish Balay ierr = TableFind(baij->colmap, in[j]/bs + 1,&col);CHKERRQ(ierr); 287fa46199cSSatish Balay col = col - 1 + in[j]%bs; 28848e59246SSatish Balay #else 289905e6a2fSBarry Smith col = baij->colmap[in[j]/bs] - 1 + in[j]%bs; 29048e59246SSatish Balay #endif 29157b952d6SSatish Balay if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 29257b952d6SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 29357b952d6SSatish Balay col = in[j]; 2949bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2959bf004c3SSatish Balay B = baij->B; 2969bf004c3SSatish Balay b = (Mat_SeqBAIJ *) (B)->data; 2979bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2989bf004c3SSatish Balay ba=b->a; 29957b952d6SSatish Balay } 300d64ed03dSBarry Smith } else col = in[j]; 30157b952d6SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 302ac7a638eSSatish Balay MatSetValues_SeqBAIJ_B_Private(row,col,value,addv); 303ac7a638eSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 30457b952d6SSatish Balay } 30557b952d6SSatish Balay } 306d64ed03dSBarry Smith } else { 30790f02eecSBarry Smith if ( !baij->donotstash) { 308ff2fd236SBarry Smith if (roworiented) { 3098798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 310ff2fd236SBarry Smith } else { 3118798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 31257b952d6SSatish Balay } 31357b952d6SSatish Balay } 31457b952d6SSatish Balay } 31590f02eecSBarry Smith } 3163a40ed3dSBarry Smith PetscFunctionReturn(0); 31757b952d6SSatish Balay } 31857b952d6SSatish Balay 319ab26458aSBarry Smith #undef __FUNC__ 320ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ" 321ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 322ab26458aSBarry Smith { 323ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 32430793edcSSatish Balay Scalar *value,*barray=baij->barray; 3257ef1d9bdSSatish Balay int ierr,i,j,ii,jj,row,col; 326ab26458aSBarry Smith int roworiented = baij->roworiented,rstart=baij->rstart ; 327ab26458aSBarry Smith int rend=baij->rend,cstart=baij->cstart,stepval; 328ab26458aSBarry Smith int cend=baij->cend,bs=baij->bs,bs2=baij->bs2; 329ab26458aSBarry Smith 330b16ae2b1SBarry Smith PetscFunctionBegin; 33130793edcSSatish Balay if(!barray) { 33247513183SBarry Smith baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar));CHKPTRQ(barray); 33330793edcSSatish Balay } 33430793edcSSatish Balay 335ab26458aSBarry Smith if (roworiented) { 336ab26458aSBarry Smith stepval = (n-1)*bs; 337ab26458aSBarry Smith } else { 338ab26458aSBarry Smith stepval = (m-1)*bs; 339ab26458aSBarry Smith } 340ab26458aSBarry Smith for ( i=0; i<m; i++ ) { 3415ef9f2a5SBarry Smith if (im[i] < 0) continue; 342aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3435ef9f2a5SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large, row %d max %d",im[i],baij->Mbs); 344ab26458aSBarry Smith #endif 345ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 346ab26458aSBarry Smith row = im[i] - rstart; 347ab26458aSBarry Smith for ( j=0; j<n; j++ ) { 34815b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 34915b57d14SSatish Balay if ((roworiented) && (n == 1)) { 35015b57d14SSatish Balay barray = v + i*bs2; 35115b57d14SSatish Balay } else if((!roworiented) && (m == 1)) { 35215b57d14SSatish Balay barray = v + j*bs2; 35315b57d14SSatish Balay } else { /* Here a copy is required */ 354ab26458aSBarry Smith if (roworiented) { 355ab26458aSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 356ab26458aSBarry Smith } else { 357ab26458aSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 358abef11f7SSatish Balay } 35947513183SBarry Smith for ( ii=0; ii<bs; ii++,value+=stepval ) { 36047513183SBarry Smith for (jj=0; jj<bs; jj++ ) { 36130793edcSSatish Balay *barray++ = *value++; 36247513183SBarry Smith } 36347513183SBarry Smith } 36430793edcSSatish Balay barray -=bs2; 36515b57d14SSatish Balay } 366abef11f7SSatish Balay 367abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend){ 368abef11f7SSatish Balay col = in[j] - cstart; 36930793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 370ab26458aSBarry Smith } 3715ef9f2a5SBarry Smith else if (in[j] < 0) continue; 372aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 3735ef9f2a5SBarry Smith else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large, col %d max %d",in[j],baij->Nbs);} 374ab26458aSBarry Smith #endif 375ab26458aSBarry Smith else { 376ab26458aSBarry Smith if (mat->was_assembled) { 377ab26458aSBarry Smith if (!baij->colmap) { 378ab26458aSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 379ab26458aSBarry Smith } 380a5eb4965SSatish Balay 381aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 382aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 383fa46199cSSatish Balay { int data; 384fa46199cSSatish Balay ierr = TableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 385fa46199cSSatish Balay if((data - 1) % bs) 38648e59246SSatish Balay {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");} 387fa46199cSSatish Balay } 38848e59246SSatish Balay #else 389a8c6a408SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");} 390a5eb4965SSatish Balay #endif 39148e59246SSatish Balay #endif 392aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 393fa46199cSSatish Balay ierr = TableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 394fa46199cSSatish Balay col = (col - 1)/bs; 39548e59246SSatish Balay #else 396a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 39748e59246SSatish Balay #endif 398ab26458aSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 399ab26458aSBarry Smith ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 400ab26458aSBarry Smith col = in[j]; 401ab26458aSBarry Smith } 402ab26458aSBarry Smith } 403ab26458aSBarry Smith else col = in[j]; 40430793edcSSatish Balay ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr); 405ab26458aSBarry Smith } 406ab26458aSBarry Smith } 407d64ed03dSBarry Smith } else { 408ab26458aSBarry Smith if (!baij->donotstash) { 409ff2fd236SBarry Smith if (roworiented) { 4108798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 411ff2fd236SBarry Smith } else { 4128798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 413ff2fd236SBarry Smith } 414abef11f7SSatish Balay } 415ab26458aSBarry Smith } 416ab26458aSBarry Smith } 4173a40ed3dSBarry Smith PetscFunctionReturn(0); 418ab26458aSBarry Smith } 4190bdbc534SSatish Balay #define HASH_KEY 0.6180339887 420c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 421c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp))) 422c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */ 4235615d1e5SSatish Balay #undef __FUNC__ 4240bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT" 4250bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 4260bdbc534SSatish Balay { 4270bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 4280bdbc534SSatish Balay int ierr,i,j,row,col; 4290bdbc534SSatish Balay int roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ; 430c2760754SSatish Balay int rend_orig=baij->rend_bs,Nbs=baij->Nbs; 431c2760754SSatish Balay int h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx; 432c2760754SSatish Balay double tmp; 433b9e4cc15SSatish Balay Scalar ** HD = baij->hd,value; 434aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4354a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4364a15367fSSatish Balay #endif 4370bdbc534SSatish Balay 4380bdbc534SSatish Balay PetscFunctionBegin; 4390bdbc534SSatish Balay 4400bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 441aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 4420bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 4430bdbc534SSatish Balay if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 4440bdbc534SSatish Balay #endif 4450bdbc534SSatish Balay row = im[i]; 446c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4470bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 4480bdbc534SSatish Balay col = in[j]; 4490bdbc534SSatish Balay if (roworiented) value = v[i*n+j]; else value = v[i+j*m]; 4500bdbc534SSatish Balay /* Look up into the Hash Table */ 451c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 452c2760754SSatish Balay h1 = HASH(size,key,tmp); 4530bdbc534SSatish Balay 454c2760754SSatish Balay 455c2760754SSatish Balay idx = h1; 456aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 457187ce0cbSSatish Balay insert_ct++; 458187ce0cbSSatish Balay total_ct++; 459187ce0cbSSatish Balay if (HT[idx] != key) { 460187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 461187ce0cbSSatish Balay if (idx == size) { 462187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 463187ce0cbSSatish Balay if (idx == h1) { 464187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 465187ce0cbSSatish Balay } 466187ce0cbSSatish Balay } 467187ce0cbSSatish Balay } 468187ce0cbSSatish Balay #else 469c2760754SSatish Balay if (HT[idx] != key) { 470c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 471c2760754SSatish Balay if (idx == size) { 472c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 473c2760754SSatish Balay if (idx == h1) { 474c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 475c2760754SSatish Balay } 476c2760754SSatish Balay } 477c2760754SSatish Balay } 478187ce0cbSSatish Balay #endif 479c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 480c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 481c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 4820bdbc534SSatish Balay } 4830bdbc534SSatish Balay } else { 4840bdbc534SSatish Balay if (!baij->donotstash) { 485ff2fd236SBarry Smith if (roworiented) { 4868798bf22SSatish Balay ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr); 487ff2fd236SBarry Smith } else { 4888798bf22SSatish Balay ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr); 4890bdbc534SSatish Balay } 4900bdbc534SSatish Balay } 4910bdbc534SSatish Balay } 4920bdbc534SSatish Balay } 493aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 494187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 495187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 496187ce0cbSSatish Balay #endif 4970bdbc534SSatish Balay PetscFunctionReturn(0); 4980bdbc534SSatish Balay } 4990bdbc534SSatish Balay 5000bdbc534SSatish Balay #undef __FUNC__ 5010bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT" 5020bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv) 5030bdbc534SSatish Balay { 5040bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 5058798bf22SSatish Balay int ierr,i,j,ii,jj,row,col; 5060bdbc534SSatish Balay int roworiented = baij->roworiented,rstart=baij->rstart ; 507b4cc0f5aSSatish Balay int rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2; 508c2760754SSatish Balay int h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 509c2760754SSatish Balay double tmp; 510187ce0cbSSatish Balay Scalar ** HD = baij->hd,*value,*v_t,*baij_a; 511aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5124a15367fSSatish Balay int total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5134a15367fSSatish Balay #endif 5140bdbc534SSatish Balay 515d0a41580SSatish Balay PetscFunctionBegin; 516d0a41580SSatish Balay 5170bdbc534SSatish Balay if (roworiented) { 5180bdbc534SSatish Balay stepval = (n-1)*bs; 5190bdbc534SSatish Balay } else { 5200bdbc534SSatish Balay stepval = (m-1)*bs; 5210bdbc534SSatish Balay } 5220bdbc534SSatish Balay for ( i=0; i<m; i++ ) { 523aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 5240bdbc534SSatish Balay if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 5250bdbc534SSatish Balay if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 5260bdbc534SSatish Balay #endif 5270bdbc534SSatish Balay row = im[i]; 528187ce0cbSSatish Balay v_t = v + i*bs2; 529c2760754SSatish Balay if (row >= rstart && row < rend) { 5300bdbc534SSatish Balay for ( j=0; j<n; j++ ) { 5310bdbc534SSatish Balay col = in[j]; 5320bdbc534SSatish Balay 5330bdbc534SSatish Balay /* Look up into the Hash Table */ 534c2760754SSatish Balay key = row*Nbs+col+1; 535c2760754SSatish Balay h1 = HASH(size,key,tmp); 5360bdbc534SSatish Balay 537c2760754SSatish Balay idx = h1; 538aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 539187ce0cbSSatish Balay total_ct++; 540187ce0cbSSatish Balay insert_ct++; 541187ce0cbSSatish Balay if (HT[idx] != key) { 542187ce0cbSSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++); 543187ce0cbSSatish Balay if (idx == size) { 544187ce0cbSSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++); 545187ce0cbSSatish Balay if (idx == h1) { 546187ce0cbSSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 547187ce0cbSSatish Balay } 548187ce0cbSSatish Balay } 549187ce0cbSSatish Balay } 550187ce0cbSSatish Balay #else 551c2760754SSatish Balay if (HT[idx] != key) { 552c2760754SSatish Balay for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++); 553c2760754SSatish Balay if (idx == size) { 554c2760754SSatish Balay for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++); 555c2760754SSatish Balay if (idx == h1) { 556c2760754SSatish Balay SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table"); 557c2760754SSatish Balay } 558c2760754SSatish Balay } 559c2760754SSatish Balay } 560187ce0cbSSatish Balay #endif 561c2760754SSatish Balay baij_a = HD[idx]; 5620bdbc534SSatish Balay if (roworiented) { 563c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 564187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 565187ce0cbSSatish Balay value = v_t; 566187ce0cbSSatish Balay v_t += bs; 567fef45726SSatish Balay if (addv == ADD_VALUES) { 568c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 569c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 570fef45726SSatish Balay baij_a[jj] += *value++; 571b4cc0f5aSSatish Balay } 572b4cc0f5aSSatish Balay } 573fef45726SSatish Balay } else { 574c2760754SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval) { 575c2760754SSatish Balay for ( jj=ii; jj<bs2; jj+=bs ) { 576fef45726SSatish Balay baij_a[jj] = *value++; 577fef45726SSatish Balay } 578fef45726SSatish Balay } 579fef45726SSatish Balay } 5800bdbc534SSatish Balay } else { 5810bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 582fef45726SSatish Balay if (addv == ADD_VALUES) { 583b4cc0f5aSSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 5840bdbc534SSatish Balay for ( jj=0; jj<bs; jj++ ) { 585fef45726SSatish Balay baij_a[jj] += *value++; 586fef45726SSatish Balay } 587fef45726SSatish Balay } 588fef45726SSatish Balay } else { 589fef45726SSatish Balay for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) { 590fef45726SSatish Balay for ( jj=0; jj<bs; jj++ ) { 591fef45726SSatish Balay baij_a[jj] = *value++; 592fef45726SSatish Balay } 593b4cc0f5aSSatish Balay } 5940bdbc534SSatish Balay } 5950bdbc534SSatish Balay } 5960bdbc534SSatish Balay } 5970bdbc534SSatish Balay } else { 5980bdbc534SSatish Balay if (!baij->donotstash) { 5990bdbc534SSatish Balay if (roworiented) { 6008798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6010bdbc534SSatish Balay } else { 6028798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6030bdbc534SSatish Balay } 6040bdbc534SSatish Balay } 6050bdbc534SSatish Balay } 6060bdbc534SSatish Balay } 607aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 608187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 609187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 610187ce0cbSSatish Balay #endif 6110bdbc534SSatish Balay PetscFunctionReturn(0); 6120bdbc534SSatish Balay } 613133cdb44SSatish Balay 6140bdbc534SSatish Balay #undef __FUNC__ 6155615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ" 616ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v) 617d6de1c52SSatish Balay { 618d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 619d6de1c52SSatish Balay int bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs; 62048e59246SSatish Balay int bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col,data; 621d6de1c52SSatish Balay 622133cdb44SSatish Balay PetscFunctionBegin; 623d6de1c52SSatish Balay for ( i=0; i<m; i++ ) { 624a8c6a408SBarry Smith if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row"); 625a8c6a408SBarry Smith if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large"); 626d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 627d6de1c52SSatish Balay row = idxm[i] - bsrstart; 628d6de1c52SSatish Balay for ( j=0; j<n; j++ ) { 629a8c6a408SBarry Smith if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column"); 630a8c6a408SBarry Smith if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large"); 631d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend){ 632d6de1c52SSatish Balay col = idxn[j] - bscstart; 63398dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 634d64ed03dSBarry Smith } else { 635905e6a2fSBarry Smith if (!baij->colmap) { 636905e6a2fSBarry Smith ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 637905e6a2fSBarry Smith } 638aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 639fa46199cSSatish Balay ierr = TableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 640fa46199cSSatish Balay data --; 64148e59246SSatish Balay #else 64248e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 64348e59246SSatish Balay #endif 64448e59246SSatish Balay if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 645d9d09a02SSatish Balay else { 64648e59246SSatish Balay col = data + idxn[j]%bs; 64798dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 648d6de1c52SSatish Balay } 649d6de1c52SSatish Balay } 650d6de1c52SSatish Balay } 651d64ed03dSBarry Smith } else { 652a8c6a408SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported"); 653d6de1c52SSatish Balay } 654d6de1c52SSatish Balay } 6553a40ed3dSBarry Smith PetscFunctionReturn(0); 656d6de1c52SSatish Balay } 657d6de1c52SSatish Balay 6585615d1e5SSatish Balay #undef __FUNC__ 6595615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ" 660ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm) 661d6de1c52SSatish Balay { 662d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 663d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data; 664acdf5bf4SSatish Balay int ierr, i,bs2=baij->bs2; 665d6de1c52SSatish Balay double sum = 0.0; 666d6de1c52SSatish Balay Scalar *v; 667d6de1c52SSatish Balay 668d64ed03dSBarry Smith PetscFunctionBegin; 669d6de1c52SSatish Balay if (baij->size == 1) { 670d6de1c52SSatish Balay ierr = MatNorm(baij->A,type,norm);CHKERRQ(ierr); 671d6de1c52SSatish Balay } else { 672d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 673d6de1c52SSatish Balay v = amat->a; 674d6de1c52SSatish Balay for (i=0; i<amat->nz*bs2; i++ ) { 675aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 676e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 677d6de1c52SSatish Balay #else 678d6de1c52SSatish Balay sum += (*v)*(*v); v++; 679d6de1c52SSatish Balay #endif 680d6de1c52SSatish Balay } 681d6de1c52SSatish Balay v = bmat->a; 682d6de1c52SSatish Balay for (i=0; i<bmat->nz*bs2; i++ ) { 683aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX) 684e20fef11SSatish Balay sum += PetscReal(PetscConj(*v)*(*v)); v++; 685d6de1c52SSatish Balay #else 686d6de1c52SSatish Balay sum += (*v)*(*v); v++; 687d6de1c52SSatish Balay #endif 688d6de1c52SSatish Balay } 689ca161407SBarry Smith ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr); 690d6de1c52SSatish Balay *norm = sqrt(*norm); 691d64ed03dSBarry Smith } else { 692e3372554SBarry Smith SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet"); 693d6de1c52SSatish Balay } 694d64ed03dSBarry Smith } 6953a40ed3dSBarry Smith PetscFunctionReturn(0); 696d6de1c52SSatish Balay } 69757b952d6SSatish Balay 698bd7f49f5SSatish Balay 699fef45726SSatish Balay /* 700fef45726SSatish Balay Creates the hash table, and sets the table 701fef45726SSatish Balay This table is created only once. 702fef45726SSatish Balay If new entried need to be added to the matrix 703fef45726SSatish Balay then the hash table has to be destroyed and 704fef45726SSatish Balay recreated. 705fef45726SSatish Balay */ 706fef45726SSatish Balay #undef __FUNC__ 707fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private" 708d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor) 709596b8d2eSBarry Smith { 710596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 711596b8d2eSBarry Smith Mat A = baij->A, B=baij->B; 712596b8d2eSBarry Smith Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data; 7130bdbc534SSatish Balay int i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 714549d3d68SSatish Balay int size,bs2=baij->bs2,rstart=baij->rstart,ierr; 715187ce0cbSSatish Balay int cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs; 716fef45726SSatish Balay int *HT,key; 7170bdbc534SSatish Balay Scalar **HD; 718c2760754SSatish Balay double tmp; 719aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 7204a15367fSSatish Balay int ct=0,max=0; 7214a15367fSSatish Balay #endif 722fef45726SSatish Balay 723d64ed03dSBarry Smith PetscFunctionBegin; 7240bdbc534SSatish Balay baij->ht_size=(int)(factor*nz); 7250bdbc534SSatish Balay size = baij->ht_size; 726fef45726SSatish Balay 7270bdbc534SSatish Balay if (baij->ht) { 7280bdbc534SSatish Balay PetscFunctionReturn(0); 729596b8d2eSBarry Smith } 7300bdbc534SSatish Balay 731fef45726SSatish Balay /* Allocate Memory for Hash Table */ 732b9e4cc15SSatish Balay baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1);CHKPTRQ(baij->hd); 733b9e4cc15SSatish Balay baij->ht = (int*)(baij->hd + size); 734b9e4cc15SSatish Balay HD = baij->hd; 735a07cd24cSSatish Balay HT = baij->ht; 736b9e4cc15SSatish Balay 737b9e4cc15SSatish Balay 738549d3d68SSatish Balay ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr); 7390bdbc534SSatish Balay 740596b8d2eSBarry Smith 741596b8d2eSBarry Smith /* Loop Over A */ 7420bdbc534SSatish Balay for ( i=0; i<a->mbs; i++ ) { 743596b8d2eSBarry Smith for ( j=ai[i]; j<ai[i+1]; j++ ) { 7440bdbc534SSatish Balay row = i+rstart; 7450bdbc534SSatish Balay col = aj[j]+cstart; 746596b8d2eSBarry Smith 747187ce0cbSSatish Balay key = row*Nbs + col + 1; 748c2760754SSatish Balay h1 = HASH(size,key,tmp); 7490bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7500bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7510bdbc534SSatish Balay HT[(h1+k)%size] = key; 7520bdbc534SSatish Balay HD[(h1+k)%size] = a->a + j*bs2; 753596b8d2eSBarry Smith break; 754aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 755187ce0cbSSatish Balay } else { 756187ce0cbSSatish Balay ct++; 757187ce0cbSSatish Balay #endif 758596b8d2eSBarry Smith } 759187ce0cbSSatish Balay } 760aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 761187ce0cbSSatish Balay if (k> max) max = k; 762187ce0cbSSatish Balay #endif 763596b8d2eSBarry Smith } 764596b8d2eSBarry Smith } 765596b8d2eSBarry Smith /* Loop Over B */ 7660bdbc534SSatish Balay for ( i=0; i<b->mbs; i++ ) { 767596b8d2eSBarry Smith for ( j=bi[i]; j<bi[i+1]; j++ ) { 7680bdbc534SSatish Balay row = i+rstart; 7690bdbc534SSatish Balay col = garray[bj[j]]; 770187ce0cbSSatish Balay key = row*Nbs + col + 1; 771c2760754SSatish Balay h1 = HASH(size,key,tmp); 7720bdbc534SSatish Balay for ( k=0; k<size; k++ ){ 7730bdbc534SSatish Balay if (HT[(h1+k)%size] == 0.0) { 7740bdbc534SSatish Balay HT[(h1+k)%size] = key; 7750bdbc534SSatish Balay HD[(h1+k)%size] = b->a + j*bs2; 776596b8d2eSBarry Smith break; 777aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 778187ce0cbSSatish Balay } else { 779187ce0cbSSatish Balay ct++; 780187ce0cbSSatish Balay #endif 781596b8d2eSBarry Smith } 782187ce0cbSSatish Balay } 783aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 784187ce0cbSSatish Balay if (k> max) max = k; 785187ce0cbSSatish Balay #endif 786596b8d2eSBarry Smith } 787596b8d2eSBarry Smith } 788596b8d2eSBarry Smith 789596b8d2eSBarry Smith /* Print Summary */ 790aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 791c2760754SSatish Balay for ( i=0,j=0; i<size; i++) 792596b8d2eSBarry Smith if (HT[i]) {j++;} 793187ce0cbSSatish Balay PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n", 794187ce0cbSSatish Balay (j== 0)? 0.0:((double)(ct+j))/j,max); 795187ce0cbSSatish Balay #endif 7963a40ed3dSBarry Smith PetscFunctionReturn(0); 797596b8d2eSBarry Smith } 79857b952d6SSatish Balay 799bbb85fb3SSatish Balay #undef __FUNC__ 800bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ" 801bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 802bbb85fb3SSatish Balay { 803bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 804ff2fd236SBarry Smith int ierr,nstash,reallocs; 805bbb85fb3SSatish Balay InsertMode addv; 806bbb85fb3SSatish Balay 807bbb85fb3SSatish Balay PetscFunctionBegin; 808bbb85fb3SSatish Balay if (baij->donotstash) { 809bbb85fb3SSatish Balay PetscFunctionReturn(0); 810bbb85fb3SSatish Balay } 811bbb85fb3SSatish Balay 812bbb85fb3SSatish Balay /* make sure all processors are either in INSERTMODE or ADDMODE */ 813bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr); 814bbb85fb3SSatish Balay if (addv == (ADD_VALUES|INSERT_VALUES)) { 815bbb85fb3SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added"); 816bbb85fb3SSatish Balay } 817bbb85fb3SSatish Balay mat->insertmode = addv; /* in case this processor had no cache */ 818bbb85fb3SSatish Balay 8198798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr); 8208798bf22SSatish Balay ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr); 8218798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8225a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 8238798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 8245a655dc6SBarry Smith PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs); 825bbb85fb3SSatish Balay PetscFunctionReturn(0); 826bbb85fb3SSatish Balay } 827bbb85fb3SSatish Balay 828bbb85fb3SSatish Balay #undef __FUNC__ 829bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ" 830bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 831bbb85fb3SSatish Balay { 832bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ *) mat->data; 833a2d1c673SSatish Balay Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data; 834a2d1c673SSatish Balay int i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2; 835a2d1c673SSatish Balay int *row,*col,other_disassembled,r1,r2,r3; 836bbb85fb3SSatish Balay Scalar *val; 837bbb85fb3SSatish Balay InsertMode addv = mat->insertmode; 838bbb85fb3SSatish Balay 839bbb85fb3SSatish Balay PetscFunctionBegin; 840bbb85fb3SSatish Balay if (!baij->donotstash) { 841a2d1c673SSatish Balay while (1) { 8428798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 843a2d1c673SSatish Balay if (!flg) break; 844a2d1c673SSatish Balay 845bbb85fb3SSatish Balay for ( i=0; i<n; ) { 846bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 847bbb85fb3SSatish Balay for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; } 848bbb85fb3SSatish Balay if (j < n) ncols = j-i; 849bbb85fb3SSatish Balay else ncols = n-i; 850bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 851bbb85fb3SSatish Balay ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr); 852bbb85fb3SSatish Balay i = j; 853bbb85fb3SSatish Balay } 854bbb85fb3SSatish Balay } 8558798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 856a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 857a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 858a2d1c673SSatish Balay restore the original flags */ 859a2d1c673SSatish Balay r1 = baij->roworiented; 860a2d1c673SSatish Balay r2 = a->roworiented; 861a2d1c673SSatish Balay r3 = b->roworiented; 862a2d1c673SSatish Balay baij->roworiented = 0; 863a2d1c673SSatish Balay a->roworiented = 0; 864a2d1c673SSatish Balay b->roworiented = 0; 865a2d1c673SSatish Balay while (1) { 8668798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 867a2d1c673SSatish Balay if (!flg) break; 868a2d1c673SSatish Balay 869a2d1c673SSatish Balay for ( i=0; i<n; ) { 870a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 871a2d1c673SSatish Balay for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; } 872a2d1c673SSatish Balay if (j < n) ncols = j-i; 873a2d1c673SSatish Balay else ncols = n-i; 874a2d1c673SSatish Balay ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr); 875a2d1c673SSatish Balay i = j; 876a2d1c673SSatish Balay } 877a2d1c673SSatish Balay } 8788798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 879a2d1c673SSatish Balay baij->roworiented = r1; 880a2d1c673SSatish Balay a->roworiented = r2; 881a2d1c673SSatish Balay b->roworiented = r3; 882bbb85fb3SSatish Balay } 883bbb85fb3SSatish Balay 884bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 885bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 886bbb85fb3SSatish Balay 887bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 888bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 889bbb85fb3SSatish Balay /* 890bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 891bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 892bbb85fb3SSatish Balay */ 893bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*) baij->B->data)->nonew) { 894bbb85fb3SSatish Balay ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr); 895bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 896bbb85fb3SSatish Balay ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 897bbb85fb3SSatish Balay } 898bbb85fb3SSatish Balay } 899bbb85fb3SSatish Balay 900bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 901bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 902bbb85fb3SSatish Balay } 903bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 904bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 905bbb85fb3SSatish Balay 906aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g) 907bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 908bbb85fb3SSatish Balay PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n", 909bbb85fb3SSatish Balay ((double)baij->ht_total_ct)/baij->ht_insert_ct); 910bbb85fb3SSatish Balay baij->ht_total_ct = 0; 911bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 912bbb85fb3SSatish Balay } 913bbb85fb3SSatish Balay #endif 914bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 915bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 916bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 917bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 918bbb85fb3SSatish Balay } 919bbb85fb3SSatish Balay 920606d414cSSatish Balay if (baij->rowvalues) { 921606d414cSSatish Balay ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr); 922606d414cSSatish Balay baij->rowvalues = 0; 923606d414cSSatish Balay } 924bbb85fb3SSatish Balay PetscFunctionReturn(0); 925bbb85fb3SSatish Balay } 92657b952d6SSatish Balay 927225e174dSSatish Balay /* 9285615d1e5SSatish Balay #undef __FUNC__ 9295615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary" 93057b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer) 93157b952d6SSatish Balay { 93257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 93357b952d6SSatish Balay int ierr; 93457b952d6SSatish Balay 935d64ed03dSBarry Smith PetscFunctionBegin; 93657b952d6SSatish Balay if (baij->size == 1) { 93757b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 938a8c6a408SBarry Smith } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported"); 9393a40ed3dSBarry Smith PetscFunctionReturn(0); 94057b952d6SSatish Balay } 941225e174dSSatish Balay */ 94257b952d6SSatish Balay 9435615d1e5SSatish Balay #undef __FUNC__ 9447b2a1423SBarry Smith #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 9457b2a1423SBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer) 94657b952d6SSatish Balay { 94757b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 94877ed5343SBarry Smith int ierr, format,bs = baij->bs, size = baij->size, rank = baij->rank; 94957b952d6SSatish Balay FILE *fd; 95057b952d6SSatish Balay 951d64ed03dSBarry Smith PetscFunctionBegin; 952*454a90a3SBarry Smith if (PetscTypeCompare(viewer,ASCII_VIEWER)) { 953d41123aaSBarry Smith ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr); 954639f9d9dSBarry Smith if (format == VIEWER_FORMAT_ASCII_INFO_LONG) { 9554e220ebcSLois Curfman McInnes MatInfo info; 956d132466eSBarry Smith ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr); 95757b952d6SSatish Balay ierr = ViewerASCIIGetPointer(viewer,&fd);CHKERRQ(ierr); 958d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 959d132466eSBarry Smith ierr = PetscSequentialPhaseBegin(mat->comm,1);CHKERRQ(ierr); 96057b952d6SSatish Balay fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n", 9614e220ebcSLois Curfman McInnes rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs, 9624e220ebcSLois Curfman McInnes baij->bs,(int)info.memory); 963d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 9644e220ebcSLois Curfman McInnes fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 965d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 9664e220ebcSLois Curfman McInnes fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs); 96757b952d6SSatish Balay fflush(fd); 968d132466eSBarry Smith ierr = PetscSequentialPhaseEnd(mat->comm,1);CHKERRQ(ierr); 96957b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 9703a40ed3dSBarry Smith PetscFunctionReturn(0); 971d64ed03dSBarry Smith } else if (format == VIEWER_FORMAT_ASCII_INFO) { 972d132466eSBarry Smith ierr = PetscPrintf(mat->comm," block size is %d\n",bs);CHKERRQ(ierr); 9733a40ed3dSBarry Smith PetscFunctionReturn(0); 97457b952d6SSatish Balay } 97557b952d6SSatish Balay } 97657b952d6SSatish Balay 977*454a90a3SBarry Smith if (PetscTypeCompare(viewer,DRAW_VIEWER)) { 97857b952d6SSatish Balay Draw draw; 97957b952d6SSatish Balay PetscTruth isnull; 98077ed5343SBarry Smith ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 9813a40ed3dSBarry Smith ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0); 98257b952d6SSatish Balay } 98357b952d6SSatish Balay 98457b952d6SSatish Balay if (size == 1) { 98557b952d6SSatish Balay ierr = MatView(baij->A,viewer);CHKERRQ(ierr); 986d64ed03dSBarry Smith } else { 98757b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 98857b952d6SSatish Balay Mat A; 98957b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 99040011551SBarry Smith int M = baij->M, N = baij->N,*ai,*aj,col,i,j,k,*rvals; 99157b952d6SSatish Balay int mbs = baij->mbs; 99257b952d6SSatish Balay Scalar *a; 99357b952d6SSatish Balay 99457b952d6SSatish Balay if (!rank) { 99555843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 996d64ed03dSBarry Smith } else { 99755843e3eSBarry Smith ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr); 99857b952d6SSatish Balay } 99957b952d6SSatish Balay PLogObjectParent(mat,A); 100057b952d6SSatish Balay 100157b952d6SSatish Balay /* copy over the A part */ 100257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 100357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 100457b952d6SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 100557b952d6SSatish Balay 100657b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 100757b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 100857b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 100957b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 101057b952d6SSatish Balay col = (baij->cstart+aj[j])*bs; 101157b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1012cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1013cee3aa6bSSatish Balay col++; a += bs; 101457b952d6SSatish Balay } 101557b952d6SSatish Balay } 101657b952d6SSatish Balay } 101757b952d6SSatish Balay /* copy over the B part */ 101857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 101957b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 102057b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 102157b952d6SSatish Balay rvals[0] = bs*(baij->rstart + i); 102257b952d6SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 102357b952d6SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 102457b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 102557b952d6SSatish Balay for (k=0; k<bs; k++ ) { 1026cee3aa6bSSatish Balay ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1027cee3aa6bSSatish Balay col++; a += bs; 102857b952d6SSatish Balay } 102957b952d6SSatish Balay } 103057b952d6SSatish Balay } 1031606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 10326d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 10336d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 103455843e3eSBarry Smith /* 103555843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 103655843e3eSBarry Smith synchronized across all processors that share the Draw object 103755843e3eSBarry Smith */ 1038*454a90a3SBarry Smith if (!rank || PetscTypeCompare(viewer,DRAW_VIEWER)) { 103957b952d6SSatish Balay ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer);CHKERRQ(ierr); 104057b952d6SSatish Balay } 104157b952d6SSatish Balay ierr = MatDestroy(A);CHKERRQ(ierr); 104257b952d6SSatish Balay } 10433a40ed3dSBarry Smith PetscFunctionReturn(0); 104457b952d6SSatish Balay } 104557b952d6SSatish Balay 104657b952d6SSatish Balay 104757b952d6SSatish Balay 10485615d1e5SSatish Balay #undef __FUNC__ 10495615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ" 1050e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer) 105157b952d6SSatish Balay { 105257b952d6SSatish Balay int ierr; 105357b952d6SSatish Balay 1054d64ed03dSBarry Smith PetscFunctionBegin; 1055*454a90a3SBarry Smith if (PetscTypeCompare(viewer,ASCII_VIEWER) || PetscTypeCompare(viewer,DRAW_VIEWER) || 1056*454a90a3SBarry Smith PetscTypeCompare(viewer,SOCKET_VIEWER)|| PetscTypeCompare(viewer,BINARY_VIEWER)) { 10577b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1058a84b093aSSatish Balay /* 1059*454a90a3SBarry Smith } else if (PetscTypeCompare(viewer,BINARY_VIEWER)) { 10603a40ed3dSBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 1061a84b093aSSatish Balay */ 10625cd90555SBarry Smith } else { 10635cd90555SBarry Smith SETERRQ(1,1,"Viewer type not supported by PETSc object"); 106457b952d6SSatish Balay } 10653a40ed3dSBarry Smith PetscFunctionReturn(0); 106657b952d6SSatish Balay } 106757b952d6SSatish Balay 10685615d1e5SSatish Balay #undef __FUNC__ 10695615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ" 1070e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat) 107179bdfe76SSatish Balay { 107279bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 107379bdfe76SSatish Balay int ierr; 107479bdfe76SSatish Balay 1075d64ed03dSBarry Smith PetscFunctionBegin; 107698dd23e9SBarry Smith 107798dd23e9SBarry Smith if (mat->mapping) { 107898dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr); 107998dd23e9SBarry Smith } 108098dd23e9SBarry Smith if (mat->bmapping) { 108198dd23e9SBarry Smith ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr); 108298dd23e9SBarry Smith } 108361b13de0SBarry Smith if (mat->rmap) { 108461b13de0SBarry Smith ierr = MapDestroy(mat->rmap);CHKERRQ(ierr); 108561b13de0SBarry Smith } 108661b13de0SBarry Smith if (mat->cmap) { 108761b13de0SBarry Smith ierr = MapDestroy(mat->cmap);CHKERRQ(ierr); 108861b13de0SBarry Smith } 1089aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1090e1311b90SBarry Smith PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",baij->M,baij->N); 109179bdfe76SSatish Balay #endif 109279bdfe76SSatish Balay 10938798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 10948798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 10958798bf22SSatish Balay 1096606d414cSSatish Balay ierr = PetscFree(baij->rowners);CHKERRQ(ierr); 109779bdfe76SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 109879bdfe76SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1099aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 1100606d414cSSatish Balay if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);} 110148e59246SSatish Balay #else 1102606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 110348e59246SSatish Balay #endif 1104606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1105606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1106606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1107606d414cSSatish Balay if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);} 1108606d414cSSatish Balay if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);} 1109606d414cSSatish Balay if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);} 1110606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 111179bdfe76SSatish Balay PLogObjectDestroy(mat); 111279bdfe76SSatish Balay PetscHeaderDestroy(mat); 11133a40ed3dSBarry Smith PetscFunctionReturn(0); 111479bdfe76SSatish Balay } 111579bdfe76SSatish Balay 11165615d1e5SSatish Balay #undef __FUNC__ 11175615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ" 1118ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1119cee3aa6bSSatish Balay { 1120cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 112147b4a8eaSLois Curfman McInnes int ierr, nt; 1122cee3aa6bSSatish Balay 1123d64ed03dSBarry Smith PetscFunctionBegin; 1124e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 112547b4a8eaSLois Curfman McInnes if (nt != a->n) { 1126a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx"); 112747b4a8eaSLois Curfman McInnes } 1128e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 112947b4a8eaSLois Curfman McInnes if (nt != a->m) { 1130a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy"); 113147b4a8eaSLois Curfman McInnes } 113243a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1133f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 113443a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1135f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 113643a90d84SBarry Smith ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 11373a40ed3dSBarry Smith PetscFunctionReturn(0); 1138cee3aa6bSSatish Balay } 1139cee3aa6bSSatish Balay 11405615d1e5SSatish Balay #undef __FUNC__ 11415615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ" 1142ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1143cee3aa6bSSatish Balay { 1144cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1145cee3aa6bSSatish Balay int ierr; 1146d64ed03dSBarry Smith 1147d64ed03dSBarry Smith PetscFunctionBegin; 114843a90d84SBarry Smith ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1149f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 115043a90d84SBarry Smith ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr); 1151f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 11523a40ed3dSBarry Smith PetscFunctionReturn(0); 1153cee3aa6bSSatish Balay } 1154cee3aa6bSSatish Balay 11555615d1e5SSatish Balay #undef __FUNC__ 11565615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ" 1157ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy) 1158cee3aa6bSSatish Balay { 1159cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1160cee3aa6bSSatish Balay int ierr; 1161cee3aa6bSSatish Balay 1162d64ed03dSBarry Smith PetscFunctionBegin; 1163cee3aa6bSSatish Balay /* do nondiagonal part */ 1164f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr); 1165cee3aa6bSSatish Balay /* send it on its way */ 1166537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1167cee3aa6bSSatish Balay /* do local part */ 1168f830108cSBarry Smith ierr = (*a->A->ops->multtrans)(a->A,xx,yy);CHKERRQ(ierr); 1169cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1170cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1171cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1172639f9d9dSBarry Smith ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11733a40ed3dSBarry Smith PetscFunctionReturn(0); 1174cee3aa6bSSatish Balay } 1175cee3aa6bSSatish Balay 11765615d1e5SSatish Balay #undef __FUNC__ 11775615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ" 1178ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1179cee3aa6bSSatish Balay { 1180cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1181cee3aa6bSSatish Balay int ierr; 1182cee3aa6bSSatish Balay 1183d64ed03dSBarry Smith PetscFunctionBegin; 1184cee3aa6bSSatish Balay /* do nondiagonal part */ 1185f830108cSBarry Smith ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr); 1186cee3aa6bSSatish Balay /* send it on its way */ 1187537820f0SBarry Smith ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 1188cee3aa6bSSatish Balay /* do local part */ 1189f830108cSBarry Smith ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1190cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1191cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1192cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1193537820f0SBarry Smith ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr); 11943a40ed3dSBarry Smith PetscFunctionReturn(0); 1195cee3aa6bSSatish Balay } 1196cee3aa6bSSatish Balay 1197cee3aa6bSSatish Balay /* 1198cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1199cee3aa6bSSatish Balay diagonal block 1200cee3aa6bSSatish Balay */ 12015615d1e5SSatish Balay #undef __FUNC__ 12025615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ" 1203ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1204cee3aa6bSSatish Balay { 1205cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 12063a40ed3dSBarry Smith int ierr; 1207d64ed03dSBarry Smith 1208d64ed03dSBarry Smith PetscFunctionBegin; 1209a8c6a408SBarry Smith if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block"); 12103a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 12113a40ed3dSBarry Smith PetscFunctionReturn(0); 1212cee3aa6bSSatish Balay } 1213cee3aa6bSSatish Balay 12145615d1e5SSatish Balay #undef __FUNC__ 12155615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ" 1216ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A) 1217cee3aa6bSSatish Balay { 1218cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 1219cee3aa6bSSatish Balay int ierr; 1220d64ed03dSBarry Smith 1221d64ed03dSBarry Smith PetscFunctionBegin; 1222cee3aa6bSSatish Balay ierr = MatScale(aa,a->A);CHKERRQ(ierr); 1223cee3aa6bSSatish Balay ierr = MatScale(aa,a->B);CHKERRQ(ierr); 12243a40ed3dSBarry Smith PetscFunctionReturn(0); 1225cee3aa6bSSatish Balay } 1226026e39d0SSatish Balay 12275615d1e5SSatish Balay #undef __FUNC__ 12285615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ" 1229ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n) 123057b952d6SSatish Balay { 123157b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1232d64ed03dSBarry Smith 1233d64ed03dSBarry Smith PetscFunctionBegin; 1234bd7f49f5SSatish Balay if (m) *m = mat->M; 1235bd7f49f5SSatish Balay if (n) *n = mat->N; 12363a40ed3dSBarry Smith PetscFunctionReturn(0); 123757b952d6SSatish Balay } 123857b952d6SSatish Balay 12395615d1e5SSatish Balay #undef __FUNC__ 12405615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ" 1241ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n) 124257b952d6SSatish Balay { 124357b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1244d64ed03dSBarry Smith 1245d64ed03dSBarry Smith PetscFunctionBegin; 1246f830108cSBarry Smith *m = mat->m; *n = mat->n; 12473a40ed3dSBarry Smith PetscFunctionReturn(0); 124857b952d6SSatish Balay } 124957b952d6SSatish Balay 12505615d1e5SSatish Balay #undef __FUNC__ 12515615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ" 1252ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n) 125357b952d6SSatish Balay { 125457b952d6SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1255d64ed03dSBarry Smith 1256d64ed03dSBarry Smith PetscFunctionBegin; 125757b952d6SSatish Balay *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs; 12583a40ed3dSBarry Smith PetscFunctionReturn(0); 125957b952d6SSatish Balay } 126057b952d6SSatish Balay 12615615d1e5SSatish Balay #undef __FUNC__ 12625615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ" 1263acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v) 1264acdf5bf4SSatish Balay { 1265acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data; 1266acdf5bf4SSatish Balay Scalar *vworkA, *vworkB, **pvA, **pvB,*v_p; 1267acdf5bf4SSatish Balay int bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB; 1268d9d09a02SSatish Balay int nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs; 1269d9d09a02SSatish Balay int *cmap, *idx_p,cstart = mat->cstart; 1270acdf5bf4SSatish Balay 1271d64ed03dSBarry Smith PetscFunctionBegin; 1272a8c6a408SBarry Smith if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active"); 1273acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1274acdf5bf4SSatish Balay 1275acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1276acdf5bf4SSatish Balay /* 1277acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1278acdf5bf4SSatish Balay */ 1279acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data; 1280bd16c2feSSatish Balay int max = 1,mbs = mat->mbs,tmp; 1281bd16c2feSSatish Balay for ( i=0; i<mbs; i++ ) { 1282acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 1283acdf5bf4SSatish Balay if (max < tmp) { max = tmp; } 1284acdf5bf4SSatish Balay } 1285549d3d68SSatish Balay mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues); 1286acdf5bf4SSatish Balay mat->rowindices = (int *) (mat->rowvalues + max*bs2); 1287acdf5bf4SSatish Balay } 1288acdf5bf4SSatish Balay 1289a8c6a408SBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows") 1290d9d09a02SSatish Balay lrow = row - brstart; 1291acdf5bf4SSatish Balay 1292acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1293acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1294acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1295f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1296f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1297acdf5bf4SSatish Balay nztot = nzA + nzB; 1298acdf5bf4SSatish Balay 1299acdf5bf4SSatish Balay cmap = mat->garray; 1300acdf5bf4SSatish Balay if (v || idx) { 1301acdf5bf4SSatish Balay if (nztot) { 1302acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1303acdf5bf4SSatish Balay int imark = -1; 1304acdf5bf4SSatish Balay if (v) { 1305acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1306acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1307d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1308acdf5bf4SSatish Balay else break; 1309acdf5bf4SSatish Balay } 1310acdf5bf4SSatish Balay imark = i; 1311acdf5bf4SSatish Balay for ( i=0; i<nzA; i++ ) v_p[imark+i] = vworkA[i]; 1312acdf5bf4SSatish Balay for ( i=imark; i<nzB; i++ ) v_p[nzA+i] = vworkB[i]; 1313acdf5bf4SSatish Balay } 1314acdf5bf4SSatish Balay if (idx) { 1315acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1316acdf5bf4SSatish Balay if (imark > -1) { 1317acdf5bf4SSatish Balay for ( i=0; i<imark; i++ ) { 1318bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1319acdf5bf4SSatish Balay } 1320acdf5bf4SSatish Balay } else { 1321acdf5bf4SSatish Balay for ( i=0; i<nzB; i++ ) { 1322d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) 1323d9d09a02SSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1324acdf5bf4SSatish Balay else break; 1325acdf5bf4SSatish Balay } 1326acdf5bf4SSatish Balay imark = i; 1327acdf5bf4SSatish Balay } 1328d9d09a02SSatish Balay for ( i=0; i<nzA; i++ ) idx_p[imark+i] = cstart*bs + cworkA[i]; 1329d9d09a02SSatish Balay for ( i=imark; i<nzB; i++ ) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1330acdf5bf4SSatish Balay } 1331d64ed03dSBarry Smith } else { 1332d212a18eSSatish Balay if (idx) *idx = 0; 1333d212a18eSSatish Balay if (v) *v = 0; 1334d212a18eSSatish Balay } 1335acdf5bf4SSatish Balay } 1336acdf5bf4SSatish Balay *nz = nztot; 1337f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1338f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 13393a40ed3dSBarry Smith PetscFunctionReturn(0); 1340acdf5bf4SSatish Balay } 1341acdf5bf4SSatish Balay 13425615d1e5SSatish Balay #undef __FUNC__ 13435615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ" 1344acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v) 1345acdf5bf4SSatish Balay { 1346acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1347d64ed03dSBarry Smith 1348d64ed03dSBarry Smith PetscFunctionBegin; 1349acdf5bf4SSatish Balay if (baij->getrowactive == PETSC_FALSE) { 1350a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called"); 1351acdf5bf4SSatish Balay } 1352acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13533a40ed3dSBarry Smith PetscFunctionReturn(0); 1354acdf5bf4SSatish Balay } 1355acdf5bf4SSatish Balay 13565615d1e5SSatish Balay #undef __FUNC__ 13575615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ" 1358ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs) 13595a838052SSatish Balay { 13605a838052SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 1361d64ed03dSBarry Smith 1362d64ed03dSBarry Smith PetscFunctionBegin; 13635a838052SSatish Balay *bs = baij->bs; 13643a40ed3dSBarry Smith PetscFunctionReturn(0); 13655a838052SSatish Balay } 13665a838052SSatish Balay 13675615d1e5SSatish Balay #undef __FUNC__ 13685615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ" 1369ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A) 137058667388SSatish Balay { 137158667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 137258667388SSatish Balay int ierr; 1373d64ed03dSBarry Smith 1374d64ed03dSBarry Smith PetscFunctionBegin; 137558667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 137658667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 13773a40ed3dSBarry Smith PetscFunctionReturn(0); 137858667388SSatish Balay } 13790ac07820SSatish Balay 13805615d1e5SSatish Balay #undef __FUNC__ 13815615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ" 1382ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 13830ac07820SSatish Balay { 13844e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data; 13854e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 13867d57db60SLois Curfman McInnes int ierr; 13877d57db60SLois Curfman McInnes double isend[5], irecv[5]; 13880ac07820SSatish Balay 1389d64ed03dSBarry Smith PetscFunctionBegin; 13904e220ebcSLois Curfman McInnes info->block_size = (double)a->bs; 13914e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 13920e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1393de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 13944e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 13950e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1396de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 13970ac07820SSatish Balay if (flag == MAT_LOCAL) { 13984e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 13994e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14004e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14014e220ebcSLois Curfman McInnes info->memory = isend[3]; 14024e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14030ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1404f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr); 14054e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14064e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14074e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14084e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14094e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14100ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1411f7cdd7c9SBarry Smith ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr); 14124e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14134e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14144e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14154e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14164e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1417d41123aaSBarry Smith } else { 1418d41123aaSBarry Smith SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag); 14190ac07820SSatish Balay } 14205a5d4f66SBarry Smith info->rows_global = (double)a->M; 14215a5d4f66SBarry Smith info->columns_global = (double)a->N; 14225a5d4f66SBarry Smith info->rows_local = (double)a->m; 14235a5d4f66SBarry Smith info->columns_local = (double)a->N; 14244e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14254e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14264e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14273a40ed3dSBarry Smith PetscFunctionReturn(0); 14280ac07820SSatish Balay } 14290ac07820SSatish Balay 14305615d1e5SSatish Balay #undef __FUNC__ 14315615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ" 1432ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op) 143358667388SSatish Balay { 143458667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data; 143598305bb5SBarry Smith int ierr; 143658667388SSatish Balay 1437d64ed03dSBarry Smith PetscFunctionBegin; 143858667388SSatish Balay if (op == MAT_NO_NEW_NONZERO_LOCATIONS || 143958667388SSatish Balay op == MAT_YES_NEW_NONZERO_LOCATIONS || 14406da5968aSLois Curfman McInnes op == MAT_COLUMNS_UNSORTED || 1441c2653b3dSLois Curfman McInnes op == MAT_COLUMNS_SORTED || 14424787f768SSatish Balay op == MAT_NEW_NONZERO_ALLOCATION_ERR || 14434787f768SSatish Balay op == MAT_NEW_NONZERO_LOCATION_ERR) { 144498305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 144598305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1446b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROW_ORIENTED) { 1447aeafbbfcSLois Curfman McInnes a->roworiented = 1; 144898305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 144998305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 1450b1fbbac0SLois Curfman McInnes } else if (op == MAT_ROWS_SORTED || 14516da5968aSLois Curfman McInnes op == MAT_ROWS_UNSORTED || 145258667388SSatish Balay op == MAT_SYMMETRIC || 145358667388SSatish Balay op == MAT_STRUCTURALLY_SYMMETRIC || 1454b51ba29fSSatish Balay op == MAT_YES_NEW_DIAGONALS || 145598305bb5SBarry Smith op == MAT_USE_HASH_TABLE) { 145658667388SSatish Balay PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n"); 145798305bb5SBarry Smith } else if (op == MAT_COLUMN_ORIENTED) { 145858667388SSatish Balay a->roworiented = 0; 145998305bb5SBarry Smith ierr = MatSetOption(a->A,op);CHKERRQ(ierr); 146098305bb5SBarry Smith ierr = MatSetOption(a->B,op);CHKERRQ(ierr); 14612b362799SSatish Balay } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) { 146290f02eecSBarry Smith a->donotstash = 1; 1463d64ed03dSBarry Smith } else if (op == MAT_NO_NEW_DIAGONALS) { 1464d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS"); 1465133cdb44SSatish Balay } else if (op == MAT_USE_HASH_TABLE) { 1466133cdb44SSatish Balay a->ht_flag = 1; 1467d64ed03dSBarry Smith } else { 1468d64ed03dSBarry Smith SETERRQ(PETSC_ERR_SUP,0,"unknown option"); 1469d64ed03dSBarry Smith } 14703a40ed3dSBarry Smith PetscFunctionReturn(0); 147158667388SSatish Balay } 147258667388SSatish Balay 14735615d1e5SSatish Balay #undef __FUNC__ 14745615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ(" 1475ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout) 14760ac07820SSatish Balay { 14770ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data; 14780ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14790ac07820SSatish Balay Mat B; 148040011551SBarry Smith int ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col; 14810ac07820SSatish Balay int bs=baij->bs,mbs=baij->mbs; 14820ac07820SSatish Balay Scalar *a; 14830ac07820SSatish Balay 1484d64ed03dSBarry Smith PetscFunctionBegin; 1485a8c6a408SBarry Smith if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place"); 148628937c7bSBarry Smith ierr = MatCreateMPIBAIJ(A->comm,baij->bs,baij->n,baij->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B); 14870ac07820SSatish Balay CHKERRQ(ierr); 14880ac07820SSatish Balay 14890ac07820SSatish Balay /* copy over the A part */ 14900ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->A->data; 14910ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 14920ac07820SSatish Balay rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals); 14930ac07820SSatish Balay 14940ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 14950ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 14960ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 14970ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 14980ac07820SSatish Balay col = (baij->cstart+aj[j])*bs; 14990ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15000ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15010ac07820SSatish Balay col++; a += bs; 15020ac07820SSatish Balay } 15030ac07820SSatish Balay } 15040ac07820SSatish Balay } 15050ac07820SSatish Balay /* copy over the B part */ 15060ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*) baij->B->data; 15070ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 15080ac07820SSatish Balay for ( i=0; i<mbs; i++ ) { 15090ac07820SSatish Balay rvals[0] = bs*(baij->rstart + i); 15100ac07820SSatish Balay for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; } 15110ac07820SSatish Balay for ( j=ai[i]; j<ai[i+1]; j++ ) { 15120ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 15130ac07820SSatish Balay for (k=0; k<bs; k++ ) { 15140ac07820SSatish Balay ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 15150ac07820SSatish Balay col++; a += bs; 15160ac07820SSatish Balay } 15170ac07820SSatish Balay } 15180ac07820SSatish Balay } 1519606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 15200ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15210ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 15220ac07820SSatish Balay 15230ac07820SSatish Balay if (matout != PETSC_NULL) { 15240ac07820SSatish Balay *matout = B; 15250ac07820SSatish Balay } else { 1526f830108cSBarry Smith PetscOps *Abops; 1527cc2dc46cSBarry Smith MatOps Aops; 1528f830108cSBarry Smith 15290ac07820SSatish Balay /* This isn't really an in-place transpose .... but free data structures from baij */ 1530606d414cSSatish Balay ierr = PetscFree(baij->rowners); CHKERRQ(ierr); 15310ac07820SSatish Balay ierr = MatDestroy(baij->A);CHKERRQ(ierr); 15320ac07820SSatish Balay ierr = MatDestroy(baij->B);CHKERRQ(ierr); 1533aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 1534606d414cSSatish Balay if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);} 1535b1fc9764SSatish Balay #else 1536606d414cSSatish Balay if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);} 1537b1fc9764SSatish Balay #endif 1538606d414cSSatish Balay if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);} 1539606d414cSSatish Balay if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);} 1540606d414cSSatish Balay if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);} 1541606d414cSSatish Balay ierr = PetscFree(baij);CHKERRQ(ierr); 1542f830108cSBarry Smith 1543f830108cSBarry Smith /* 1544f830108cSBarry Smith This is horrible, horrible code. We need to keep the 1545f830108cSBarry Smith A pointers for the bops and ops but copy everything 1546f830108cSBarry Smith else from C. 1547f830108cSBarry Smith */ 1548f830108cSBarry Smith Abops = A->bops; 1549f830108cSBarry Smith Aops = A->ops; 1550549d3d68SSatish Balay ierr = PetscMemcpy(A,B,sizeof(struct _p_Mat));CHKERRQ(ierr); 1551f830108cSBarry Smith A->bops = Abops; 1552f830108cSBarry Smith A->ops = Aops; 1553f830108cSBarry Smith 15540ac07820SSatish Balay PetscHeaderDestroy(B); 15550ac07820SSatish Balay } 15563a40ed3dSBarry Smith PetscFunctionReturn(0); 15570ac07820SSatish Balay } 15580e95ebc0SSatish Balay 15595615d1e5SSatish Balay #undef __FUNC__ 15605615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ" 156136c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 15620e95ebc0SSatish Balay { 156336c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data; 156436c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 15650e95ebc0SSatish Balay int ierr,s1,s2,s3; 15660e95ebc0SSatish Balay 1567d64ed03dSBarry Smith PetscFunctionBegin; 156836c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 156936c4a09eSSatish Balay if (rr) { 157036c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 157136c4a09eSSatish Balay if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size"); 157236c4a09eSSatish Balay /* Overlap communication with computation. */ 157336c4a09eSSatish Balay ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 157436c4a09eSSatish Balay } 15750e95ebc0SSatish Balay if (ll) { 15760e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 157736c4a09eSSatish Balay if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size"); 157836c4a09eSSatish Balay ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr); 15790e95ebc0SSatish Balay } 158036c4a09eSSatish Balay /* scale the diagonal block */ 158136c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 158236c4a09eSSatish Balay 158336c4a09eSSatish Balay if (rr) { 158436c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 158536c4a09eSSatish Balay ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); 158636c4a09eSSatish Balay ierr = (*b->ops->diagonalscale)(b,0,baij->lvec);CHKERRQ(ierr); 158736c4a09eSSatish Balay } 158836c4a09eSSatish Balay 15893a40ed3dSBarry Smith PetscFunctionReturn(0); 15900e95ebc0SSatish Balay } 15910e95ebc0SSatish Balay 15925615d1e5SSatish Balay #undef __FUNC__ 15935615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ" 1594ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag) 15950ac07820SSatish Balay { 15960ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 15970ac07820SSatish Balay int i,ierr,N, *rows,*owners = l->rowners,size = l->size; 1598a07cd24cSSatish Balay int *procs,*nprocs,j,found,idx,nsends,*work,row; 15990ac07820SSatish Balay int nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank; 16000ac07820SSatish Balay int *rvalues,tag = A->tag,count,base,slen,n,*source; 1601a07cd24cSSatish Balay int *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs; 16020ac07820SSatish Balay MPI_Comm comm = A->comm; 16030ac07820SSatish Balay MPI_Request *send_waits,*recv_waits; 16040ac07820SSatish Balay MPI_Status recv_status,*send_status; 16050ac07820SSatish Balay IS istmp; 16060ac07820SSatish Balay 1607d64ed03dSBarry Smith PetscFunctionBegin; 16080ac07820SSatish Balay ierr = ISGetSize(is,&N);CHKERRQ(ierr); 16090ac07820SSatish Balay ierr = ISGetIndices(is,&rows);CHKERRQ(ierr); 16100ac07820SSatish Balay 16110ac07820SSatish Balay /* first count number of contributors to each processor */ 16120ac07820SSatish Balay nprocs = (int *) PetscMalloc( 2*size*sizeof(int) );CHKPTRQ(nprocs); 1613549d3d68SSatish Balay ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 1614549d3d68SSatish Balay procs = nprocs + size; 16150ac07820SSatish Balay owner = (int *) PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/ 16160ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16170ac07820SSatish Balay idx = rows[i]; 16180ac07820SSatish Balay found = 0; 16190ac07820SSatish Balay for ( j=0; j<size; j++ ) { 16200ac07820SSatish Balay if (idx >= owners[j]*bs && idx < owners[j+1]*bs) { 16210ac07820SSatish Balay nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break; 16220ac07820SSatish Balay } 16230ac07820SSatish Balay } 1624a8c6a408SBarry Smith if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range"); 16250ac07820SSatish Balay } 16260ac07820SSatish Balay nsends = 0; for ( i=0; i<size; i++ ) { nsends += procs[i];} 16270ac07820SSatish Balay 16280ac07820SSatish Balay /* inform other processors of number of messages and max length*/ 16290ac07820SSatish Balay work = (int *) PetscMalloc( size*sizeof(int) );CHKPTRQ(work); 1630ca161407SBarry Smith ierr = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr); 16310ac07820SSatish Balay nrecvs = work[rank]; 1632ca161407SBarry Smith ierr = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 16330ac07820SSatish Balay nmax = work[rank]; 1634606d414cSSatish Balay ierr = PetscFree(work);CHKERRQ(ierr); 16350ac07820SSatish Balay 16360ac07820SSatish Balay /* post receives: */ 1637d64ed03dSBarry Smith rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues); 1638d64ed03dSBarry Smith recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits); 16390ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 1640ca161407SBarry Smith ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr); 16410ac07820SSatish Balay } 16420ac07820SSatish Balay 16430ac07820SSatish Balay /* do sends: 16440ac07820SSatish Balay 1) starts[i] gives the starting index in svalues for stuff going to 16450ac07820SSatish Balay the ith processor 16460ac07820SSatish Balay */ 16470ac07820SSatish Balay svalues = (int *) PetscMalloc( (N+1)*sizeof(int) );CHKPTRQ(svalues); 1648ca161407SBarry Smith send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits); 16490ac07820SSatish Balay starts = (int *) PetscMalloc( (size+1)*sizeof(int) );CHKPTRQ(starts); 16500ac07820SSatish Balay starts[0] = 0; 16510ac07820SSatish Balay for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16520ac07820SSatish Balay for ( i=0; i<N; i++ ) { 16530ac07820SSatish Balay svalues[starts[owner[i]]++] = rows[i]; 16540ac07820SSatish Balay } 16550ac07820SSatish Balay ISRestoreIndices(is,&rows); 16560ac07820SSatish Balay 16570ac07820SSatish Balay starts[0] = 0; 16580ac07820SSatish Balay for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];} 16590ac07820SSatish Balay count = 0; 16600ac07820SSatish Balay for ( i=0; i<size; i++ ) { 16610ac07820SSatish Balay if (procs[i]) { 1662ca161407SBarry Smith ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr); 16630ac07820SSatish Balay } 16640ac07820SSatish Balay } 1665606d414cSSatish Balay ierr = PetscFree(starts);CHKERRQ(ierr); 16660ac07820SSatish Balay 16670ac07820SSatish Balay base = owners[rank]*bs; 16680ac07820SSatish Balay 16690ac07820SSatish Balay /* wait on receives */ 16700ac07820SSatish Balay lens = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) );CHKPTRQ(lens); 16710ac07820SSatish Balay source = lens + nrecvs; 16720ac07820SSatish Balay count = nrecvs; slen = 0; 16730ac07820SSatish Balay while (count) { 1674ca161407SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 16750ac07820SSatish Balay /* unpack receives into our local space */ 1676ca161407SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr); 16770ac07820SSatish Balay source[imdex] = recv_status.MPI_SOURCE; 16780ac07820SSatish Balay lens[imdex] = n; 16790ac07820SSatish Balay slen += n; 16800ac07820SSatish Balay count--; 16810ac07820SSatish Balay } 1682606d414cSSatish Balay ierr = PetscFree(recv_waits); CHKERRQ(ierr); 16830ac07820SSatish Balay 16840ac07820SSatish Balay /* move the data into the send scatter */ 16850ac07820SSatish Balay lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) );CHKPTRQ(lrows); 16860ac07820SSatish Balay count = 0; 16870ac07820SSatish Balay for ( i=0; i<nrecvs; i++ ) { 16880ac07820SSatish Balay values = rvalues + i*nmax; 16890ac07820SSatish Balay for ( j=0; j<lens[i]; j++ ) { 16900ac07820SSatish Balay lrows[count++] = values[j] - base; 16910ac07820SSatish Balay } 16920ac07820SSatish Balay } 1693606d414cSSatish Balay ierr = PetscFree(rvalues);CHKERRQ(ierr); 1694606d414cSSatish Balay ierr = PetscFree(lens);CHKERRQ(ierr); 1695606d414cSSatish Balay ierr = PetscFree(owner);CHKERRQ(ierr); 1696606d414cSSatish Balay ierr = PetscFree(nprocs);CHKERRQ(ierr); 16970ac07820SSatish Balay 16980ac07820SSatish Balay /* actually zap the local rows */ 1699029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr); 17000ac07820SSatish Balay PLogObjectParent(A,istmp); 1701a07cd24cSSatish Balay 170272dacd9aSBarry Smith /* 170372dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 170472dacd9aSBarry Smith is square and the user wishes to set the diagonal we use seperate 170572dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 170672dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 170772dacd9aSBarry Smith 170872dacd9aSBarry Smith Contributed by: Mathew Knepley 170972dacd9aSBarry Smith */ 17109c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 17110ac07820SSatish Balay ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr); 17129c957beeSSatish Balay if (diag && (l->A->M == l->A->N)) { 17139c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr); 17149c957beeSSatish Balay } else if (diag) { 17159c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 1716fa46199cSSatish Balay if (((Mat_SeqBAIJ*)l->A->data)->nonew) { 1717fa46199cSSatish Balay SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1718fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 17196525c446SSatish Balay } 1720a07cd24cSSatish Balay for ( i = 0; i < slen; i++ ) { 1721a07cd24cSSatish Balay row = lrows[i] + rstart_bs; 1722a07cd24cSSatish Balay ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr); 1723a07cd24cSSatish Balay } 1724a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1725a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17269c957beeSSatish Balay } else { 17279c957beeSSatish Balay ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr); 1728a07cd24cSSatish Balay } 17299c957beeSSatish Balay 17309c957beeSSatish Balay ierr = ISDestroy(istmp);CHKERRQ(ierr); 1731606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 1732a07cd24cSSatish Balay 17330ac07820SSatish Balay /* wait on sends */ 17340ac07820SSatish Balay if (nsends) { 1735d64ed03dSBarry Smith send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status); 1736ca161407SBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 1737606d414cSSatish Balay ierr = PetscFree(send_status);CHKERRQ(ierr); 17380ac07820SSatish Balay } 1739606d414cSSatish Balay ierr = PetscFree(send_waits);CHKERRQ(ierr); 1740606d414cSSatish Balay ierr = PetscFree(svalues);CHKERRQ(ierr); 17410ac07820SSatish Balay 17423a40ed3dSBarry Smith PetscFunctionReturn(0); 17430ac07820SSatish Balay } 174472dacd9aSBarry Smith 17455615d1e5SSatish Balay #undef __FUNC__ 17465615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ" 1747ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A) 1748ba4ca20aSSatish Balay { 1749ba4ca20aSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 175025fdafccSSatish Balay MPI_Comm comm = A->comm; 1751133cdb44SSatish Balay static int called = 0; 17523a40ed3dSBarry Smith int ierr; 1753ba4ca20aSSatish Balay 1754d64ed03dSBarry Smith PetscFunctionBegin; 17553a40ed3dSBarry Smith if (!a->rank) { 17563a40ed3dSBarry Smith ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr); 175725fdafccSSatish Balay } 175825fdafccSSatish Balay if (called) {PetscFunctionReturn(0);} else called = 1; 1759d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr); 1760d132466eSBarry Smith ierr = (*PetscHelpPrintf)(comm," -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr); 17613a40ed3dSBarry Smith PetscFunctionReturn(0); 1762ba4ca20aSSatish Balay } 17630ac07820SSatish Balay 17645615d1e5SSatish Balay #undef __FUNC__ 17655615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ" 1766ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A) 1767bb5a7306SBarry Smith { 1768bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 1769bb5a7306SBarry Smith int ierr; 1770d64ed03dSBarry Smith 1771d64ed03dSBarry Smith PetscFunctionBegin; 1772bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 17733a40ed3dSBarry Smith PetscFunctionReturn(0); 1774bb5a7306SBarry Smith } 1775bb5a7306SBarry Smith 17762e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *); 17770ac07820SSatish Balay 17787fc3c18eSBarry Smith #undef __FUNC__ 17797fc3c18eSBarry Smith #define __FUNC__ "MatEqual_MPIBAIJ" 17807fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A, Mat B, PetscTruth *flag) 17817fc3c18eSBarry Smith { 17827fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *) B->data,*matA = (Mat_MPIBAIJ *) A->data; 17837fc3c18eSBarry Smith Mat a, b, c, d; 17847fc3c18eSBarry Smith PetscTruth flg; 17857fc3c18eSBarry Smith int ierr; 17867fc3c18eSBarry Smith 17877fc3c18eSBarry Smith PetscFunctionBegin; 17887fc3c18eSBarry Smith if (B->type != MATMPIBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type"); 17897fc3c18eSBarry Smith a = matA->A; b = matA->B; 17907fc3c18eSBarry Smith c = matB->A; d = matB->B; 17917fc3c18eSBarry Smith 17927fc3c18eSBarry Smith ierr = MatEqual(a, c, &flg);CHKERRQ(ierr); 17937fc3c18eSBarry Smith if (flg == PETSC_TRUE) { 17947fc3c18eSBarry Smith ierr = MatEqual(b, d, &flg);CHKERRQ(ierr); 17957fc3c18eSBarry Smith } 17967fc3c18eSBarry Smith ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr); 17977fc3c18eSBarry Smith PetscFunctionReturn(0); 17987fc3c18eSBarry Smith } 17997fc3c18eSBarry Smith 180079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 1801cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = { 1802cc2dc46cSBarry Smith MatSetValues_MPIBAIJ, 1803cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 1804cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 1805cc2dc46cSBarry Smith MatMult_MPIBAIJ, 1806cc2dc46cSBarry Smith MatMultAdd_MPIBAIJ, 1807cc2dc46cSBarry Smith MatMultTrans_MPIBAIJ, 1808cc2dc46cSBarry Smith MatMultTransAdd_MPIBAIJ, 1809cc2dc46cSBarry Smith 0, 1810cc2dc46cSBarry Smith 0, 1811cc2dc46cSBarry Smith 0, 1812cc2dc46cSBarry Smith 0, 1813cc2dc46cSBarry Smith 0, 1814cc2dc46cSBarry Smith 0, 1815cc2dc46cSBarry Smith 0, 1816cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 1817cc2dc46cSBarry Smith MatGetInfo_MPIBAIJ, 18187fc3c18eSBarry Smith MatEqual_MPIBAIJ, 1819cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 1820cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 1821cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 1822cc2dc46cSBarry Smith MatAssemblyBegin_MPIBAIJ, 1823cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 1824cc2dc46cSBarry Smith 0, 1825cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 1826cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 1827cc2dc46cSBarry Smith MatZeroRows_MPIBAIJ, 1828cc2dc46cSBarry Smith 0, 1829cc2dc46cSBarry Smith 0, 1830cc2dc46cSBarry Smith 0, 1831cc2dc46cSBarry Smith 0, 1832cc2dc46cSBarry Smith MatGetSize_MPIBAIJ, 1833cc2dc46cSBarry Smith MatGetLocalSize_MPIBAIJ, 1834cc2dc46cSBarry Smith MatGetOwnershipRange_MPIBAIJ, 1835cc2dc46cSBarry Smith 0, 1836cc2dc46cSBarry Smith 0, 1837cc2dc46cSBarry Smith 0, 1838cc2dc46cSBarry Smith 0, 18392e8a6d31SBarry Smith MatDuplicate_MPIBAIJ, 1840cc2dc46cSBarry Smith 0, 1841cc2dc46cSBarry Smith 0, 1842cc2dc46cSBarry Smith 0, 1843cc2dc46cSBarry Smith 0, 1844cc2dc46cSBarry Smith 0, 1845cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 1846cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 1847cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 1848cc2dc46cSBarry Smith 0, 1849cc2dc46cSBarry Smith MatPrintHelp_MPIBAIJ, 1850cc2dc46cSBarry Smith MatScale_MPIBAIJ, 1851cc2dc46cSBarry Smith 0, 1852cc2dc46cSBarry Smith 0, 1853cc2dc46cSBarry Smith 0, 1854cc2dc46cSBarry Smith MatGetBlockSize_MPIBAIJ, 1855cc2dc46cSBarry Smith 0, 1856cc2dc46cSBarry Smith 0, 1857cc2dc46cSBarry Smith 0, 1858cc2dc46cSBarry Smith 0, 1859cc2dc46cSBarry Smith 0, 1860cc2dc46cSBarry Smith 0, 1861cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 1862cc2dc46cSBarry Smith 0, 1863cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 1864cc2dc46cSBarry Smith 0, 1865cc2dc46cSBarry Smith 0, 1866cc2dc46cSBarry Smith 0, 1867cc2dc46cSBarry Smith MatGetMaps_Petsc}; 186879bdfe76SSatish Balay 18695ef9f2a5SBarry Smith 1870e18c124aSSatish Balay EXTERN_C_BEGIN 18715ef9f2a5SBarry Smith #undef __FUNC__ 18725ef9f2a5SBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIBAIJ" 18735ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a) 18745ef9f2a5SBarry Smith { 18755ef9f2a5SBarry Smith PetscFunctionBegin; 18765ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 18775ef9f2a5SBarry Smith *iscopy = PETSC_FALSE; 18785ef9f2a5SBarry Smith PetscFunctionReturn(0); 18795ef9f2a5SBarry Smith } 1880e18c124aSSatish Balay EXTERN_C_END 188179bdfe76SSatish Balay 18825615d1e5SSatish Balay #undef __FUNC__ 18835615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ" 188479bdfe76SSatish Balay /*@C 188579bdfe76SSatish Balay MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format 188679bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 188779bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 188879bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 188979bdfe76SSatish Balay performance can be increased by more than a factor of 50. 189079bdfe76SSatish Balay 1891db81eaa0SLois Curfman McInnes Collective on MPI_Comm 1892db81eaa0SLois Curfman McInnes 189379bdfe76SSatish Balay Input Parameters: 1894db81eaa0SLois Curfman McInnes + comm - MPI communicator 189579bdfe76SSatish Balay . bs - size of blockk 189679bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 189792e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 189892e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 189992e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 190092e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 190192e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 1902be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 1903be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 190479bdfe76SSatish Balay . d_nz - number of block nonzeros per block row in diagonal portion of local 190579bdfe76SSatish Balay submatrix (same for all local rows) 19067fc3c18eSBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 190792e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 1908db81eaa0SLois Curfman McInnes row) or PETSC_NULL. You must leave room for the diagonal entry even if it is zero. 190992e8d321SLois Curfman McInnes . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 191079bdfe76SSatish Balay submatrix (same for all local rows). 19117fc3c18eSBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 191292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 191392e8d321SLois Curfman McInnes each block row) or PETSC_NULL. 191479bdfe76SSatish Balay 191579bdfe76SSatish Balay Output Parameter: 191679bdfe76SSatish Balay . A - the matrix 191779bdfe76SSatish Balay 1918db81eaa0SLois Curfman McInnes Options Database Keys: 1919db81eaa0SLois Curfman McInnes . -mat_no_unroll - uses code that does not unroll the loops in the 1920db81eaa0SLois Curfman McInnes block calculations (much slower) 1921db81eaa0SLois Curfman McInnes . -mat_block_size - size of the blocks to use 1922494eafd4SBarry Smith . -mat_mpi - use the parallel matrix data structures even on one processor 1923494eafd4SBarry Smith (defaults to using SeqBAIJ format on one processor) 19243ffaccefSLois Curfman McInnes 1925b259b22eSLois Curfman McInnes Notes: 192679bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 192779bdfe76SSatish Balay (possibly both). 192879bdfe76SSatish Balay 1929be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 1930be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 1931be79a94dSBarry Smith 193279bdfe76SSatish Balay Storage Information: 193379bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 193479bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 193579bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 193679bdfe76SSatish Balay local matrix (a rectangular submatrix). 193779bdfe76SSatish Balay 193879bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 193979bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 194079bdfe76SSatish Balay d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic 194179bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 194279bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 194379bdfe76SSatish Balay 194479bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 194579bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 194679bdfe76SSatish Balay 1947db81eaa0SLois Curfman McInnes .vb 1948db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 1949db81eaa0SLois Curfman McInnes ------------------- 1950db81eaa0SLois Curfman McInnes row 3 | o o o d d d o o o o o o 1951db81eaa0SLois Curfman McInnes row 4 | o o o d d d o o o o o o 1952db81eaa0SLois Curfman McInnes row 5 | o o o d d d o o o o o o 1953db81eaa0SLois Curfman McInnes ------------------- 1954db81eaa0SLois Curfman McInnes .ve 195579bdfe76SSatish Balay 195679bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 195779bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 195879bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 195957b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 196079bdfe76SSatish Balay 1961d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 1962d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 196379bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 196492e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 196592e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 19666da5968aSLois Curfman McInnes matrices. 196779bdfe76SSatish Balay 1968027ccd11SLois Curfman McInnes Level: intermediate 1969027ccd11SLois Curfman McInnes 197092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 197179bdfe76SSatish Balay 1972db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIAIJ() 197379bdfe76SSatish Balay @*/ 197479bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N, 197579bdfe76SSatish Balay int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A) 197679bdfe76SSatish Balay { 197779bdfe76SSatish Balay Mat B; 197879bdfe76SSatish Balay Mat_MPIBAIJ *b; 1979133cdb44SSatish Balay int ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size,flg; 1980a2ab621fSBarry Smith int flag1 = 0,flag2 = 0; 198179bdfe76SSatish Balay 1982d64ed03dSBarry Smith PetscFunctionBegin; 1983962fb4a0SBarry Smith ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr); 1984962fb4a0SBarry Smith 1985a8c6a408SBarry Smith if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive"); 198636c4a09eSSatish Balay if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -1: value %d",d_nz); 198736c4a09eSSatish Balay if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -1: value %d",o_nz); 19884fdb0a08SBarry Smith if (d_nnz) { 198936c4a09eSSatish Balay for (i=0; i<m/bs; i++) { 19904fdb0a08SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]); 19914fdb0a08SBarry Smith } 19924fdb0a08SBarry Smith } 19934fdb0a08SBarry Smith if (o_nnz) { 199436c4a09eSSatish Balay for (i=0; i<m/bs; i++) { 19954fdb0a08SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]); 19964fdb0a08SBarry Smith } 19974fdb0a08SBarry Smith } 19983914022bSBarry Smith 1999d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2000494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpibaij",&flag1);CHKERRQ(ierr); 2001494eafd4SBarry Smith ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr); 2002494eafd4SBarry Smith if (!flag1 && !flag2 && size == 1) { 20033914022bSBarry Smith if (M == PETSC_DECIDE) M = m; 20043914022bSBarry Smith if (N == PETSC_DECIDE) N = n; 20053914022bSBarry Smith ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A);CHKERRQ(ierr); 20063a40ed3dSBarry Smith PetscFunctionReturn(0); 20073914022bSBarry Smith } 20083914022bSBarry Smith 200979bdfe76SSatish Balay *A = 0; 20103f1db9ecSBarry Smith PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",comm,MatDestroy,MatView); 201179bdfe76SSatish Balay PLogObjectCreate(B); 201279bdfe76SSatish Balay B->data = (void *) (b = PetscNew(Mat_MPIBAIJ));CHKPTRQ(b); 2013549d3d68SSatish Balay ierr = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr); 2014549d3d68SSatish Balay ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 20154c50302cSBarry Smith 2016e1311b90SBarry Smith B->ops->destroy = MatDestroy_MPIBAIJ; 2017e1311b90SBarry Smith B->ops->view = MatView_MPIBAIJ; 201890f02eecSBarry Smith B->mapping = 0; 201979bdfe76SSatish Balay B->factor = 0; 202079bdfe76SSatish Balay B->assembled = PETSC_FALSE; 202179bdfe76SSatish Balay 2022e0fa3b82SLois Curfman McInnes B->insertmode = NOT_SET_VALUES; 2023d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr); 2024d132466eSBarry Smith ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr); 202579bdfe76SSatish Balay 2026d64ed03dSBarry Smith if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) { 2027a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz"); 2028d64ed03dSBarry Smith } 2029a8c6a408SBarry Smith if ( M == PETSC_DECIDE && m == PETSC_DECIDE) { 2030a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified"); 2031a8c6a408SBarry Smith } 2032a8c6a408SBarry Smith if ( N == PETSC_DECIDE && n == PETSC_DECIDE) { 2033a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified"); 2034a8c6a408SBarry Smith } 2035cee3aa6bSSatish Balay if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE; 2036cee3aa6bSSatish Balay if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE; 203779bdfe76SSatish Balay 203879bdfe76SSatish Balay if (M == PETSC_DECIDE || N == PETSC_DECIDE) { 203979bdfe76SSatish Balay work[0] = m; work[1] = n; 204079bdfe76SSatish Balay mbs = m/bs; nbs = n/bs; 2041ca161407SBarry Smith ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr); 204279bdfe76SSatish Balay if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;} 204379bdfe76SSatish Balay if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;} 204479bdfe76SSatish Balay } 204579bdfe76SSatish Balay if (m == PETSC_DECIDE) { 204679bdfe76SSatish Balay Mbs = M/bs; 2047a8c6a408SBarry Smith if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize"); 204879bdfe76SSatish Balay mbs = Mbs/b->size + ((Mbs % b->size) > b->rank); 204979bdfe76SSatish Balay m = mbs*bs; 205079bdfe76SSatish Balay } 205179bdfe76SSatish Balay if (n == PETSC_DECIDE) { 205279bdfe76SSatish Balay Nbs = N/bs; 2053a8c6a408SBarry Smith if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize"); 205479bdfe76SSatish Balay nbs = Nbs/b->size + ((Nbs % b->size) > b->rank); 205579bdfe76SSatish Balay n = nbs*bs; 205679bdfe76SSatish Balay } 2057a8c6a408SBarry Smith if (mbs*bs != m || nbs*bs != n) { 2058a8c6a408SBarry Smith SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize"); 2059a8c6a408SBarry Smith } 206079bdfe76SSatish Balay 206179bdfe76SSatish Balay b->m = m; B->m = m; 206279bdfe76SSatish Balay b->n = n; B->n = n; 206379bdfe76SSatish Balay b->N = N; B->N = N; 206479bdfe76SSatish Balay b->M = M; B->M = M; 206579bdfe76SSatish Balay b->bs = bs; 206679bdfe76SSatish Balay b->bs2 = bs*bs; 206779bdfe76SSatish Balay b->mbs = mbs; 206879bdfe76SSatish Balay b->nbs = nbs; 206979bdfe76SSatish Balay b->Mbs = Mbs; 207079bdfe76SSatish Balay b->Nbs = Nbs; 207179bdfe76SSatish Balay 2072c7fcc2eaSBarry Smith /* the information in the maps duplicates the information computed below, eventually 2073c7fcc2eaSBarry Smith we should remove the duplicate information that is not contained in the maps */ 2074488ecbafSBarry Smith ierr = MapCreateMPI(comm,m,M,&B->rmap);CHKERRQ(ierr); 2075488ecbafSBarry Smith ierr = MapCreateMPI(comm,n,N,&B->cmap);CHKERRQ(ierr); 2076c7fcc2eaSBarry Smith 207779bdfe76SSatish Balay /* build local table of row and column ownerships */ 2078ff2fd236SBarry Smith b->rowners = (int *) PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners); 2079ff2fd236SBarry Smith PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 20800ac07820SSatish Balay b->cowners = b->rowners + b->size + 2; 2081ff2fd236SBarry Smith b->rowners_bs = b->cowners + b->size + 2; 2082ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 208379bdfe76SSatish Balay b->rowners[0] = 0; 208479bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 208579bdfe76SSatish Balay b->rowners[i] += b->rowners[i-1]; 208679bdfe76SSatish Balay } 2087ff2fd236SBarry Smith for ( i=0; i<=b->size; i++ ) { 2088ff2fd236SBarry Smith b->rowners_bs[i] = b->rowners[i]*bs; 2089ff2fd236SBarry Smith } 209079bdfe76SSatish Balay b->rstart = b->rowners[b->rank]; 209179bdfe76SSatish Balay b->rend = b->rowners[b->rank+1]; 20924fa0d573SSatish Balay b->rstart_bs = b->rstart * bs; 20934fa0d573SSatish Balay b->rend_bs = b->rend * bs; 20944fa0d573SSatish Balay 2095ca161407SBarry Smith ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 209679bdfe76SSatish Balay b->cowners[0] = 0; 209779bdfe76SSatish Balay for ( i=2; i<=b->size; i++ ) { 209879bdfe76SSatish Balay b->cowners[i] += b->cowners[i-1]; 209979bdfe76SSatish Balay } 210079bdfe76SSatish Balay b->cstart = b->cowners[b->rank]; 210179bdfe76SSatish Balay b->cend = b->cowners[b->rank+1]; 21024fa0d573SSatish Balay b->cstart_bs = b->cstart * bs; 21034fa0d573SSatish Balay b->cend_bs = b->cend * bs; 210479bdfe76SSatish Balay 2105a07cd24cSSatish Balay 210679bdfe76SSatish Balay if (d_nz == PETSC_DEFAULT) d_nz = 5; 2107029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A);CHKERRQ(ierr); 210879bdfe76SSatish Balay PLogObjectParent(B,b->A); 210979bdfe76SSatish Balay if (o_nz == PETSC_DEFAULT) o_nz = 0; 2110029af93fSBarry Smith ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B);CHKERRQ(ierr); 211179bdfe76SSatish Balay PLogObjectParent(B,b->B); 211279bdfe76SSatish Balay 211379bdfe76SSatish Balay /* build cache for off array entries formed */ 21148798bf22SSatish Balay ierr = MatStashCreate_Private(comm,1,&B->stash);CHKERRQ(ierr); 21158798bf22SSatish Balay ierr = MatStashCreate_Private(comm,bs,&B->bstash);CHKERRQ(ierr); 211690f02eecSBarry Smith b->donotstash = 0; 211779bdfe76SSatish Balay b->colmap = 0; 211879bdfe76SSatish Balay b->garray = 0; 211979bdfe76SSatish Balay b->roworiented = 1; 212079bdfe76SSatish Balay 212130793edcSSatish Balay /* stuff used in block assembly */ 212230793edcSSatish Balay b->barray = 0; 212330793edcSSatish Balay 212479bdfe76SSatish Balay /* stuff used for matrix vector multiply */ 212579bdfe76SSatish Balay b->lvec = 0; 212679bdfe76SSatish Balay b->Mvctx = 0; 212779bdfe76SSatish Balay 212879bdfe76SSatish Balay /* stuff for MatGetRow() */ 212979bdfe76SSatish Balay b->rowindices = 0; 213079bdfe76SSatish Balay b->rowvalues = 0; 213179bdfe76SSatish Balay b->getrowactive = PETSC_FALSE; 213279bdfe76SSatish Balay 2133a07cd24cSSatish Balay /* hash table stuff */ 2134a07cd24cSSatish Balay b->ht = 0; 2135187ce0cbSSatish Balay b->hd = 0; 21360bdbc534SSatish Balay b->ht_size = 0; 2137133cdb44SSatish Balay b->ht_flag = 0; 213825fdafccSSatish Balay b->ht_fact = 0; 2139187ce0cbSSatish Balay b->ht_total_ct = 0; 2140187ce0cbSSatish Balay b->ht_insert_ct = 0; 2141a07cd24cSSatish Balay 214279bdfe76SSatish Balay *A = B; 2143133cdb44SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr); 2144133cdb44SSatish Balay if (flg) { 2145133cdb44SSatish Balay double fact = 1.39; 2146133cdb44SSatish Balay ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr); 2147133cdb44SSatish Balay ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,&flg);CHKERRQ(ierr); 2148133cdb44SSatish Balay if (fact <= 1.0) fact = 1.39; 2149133cdb44SSatish Balay ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 2150133cdb44SSatish Balay PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact); 2151133cdb44SSatish Balay } 21527fc3c18eSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C", 21537fc3c18eSBarry Smith "MatStoreValues_MPIBAIJ", 21547fc3c18eSBarry Smith (void*)MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 21557fc3c18eSBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C", 21567fc3c18eSBarry Smith "MatRetrieveValues_MPIBAIJ", 21577fc3c18eSBarry Smith (void*)MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 21585ef9f2a5SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C", 21595ef9f2a5SBarry Smith "MatGetDiagonalBlock_MPIBAIJ", 21605ef9f2a5SBarry Smith (void*)MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 21613a40ed3dSBarry Smith PetscFunctionReturn(0); 216279bdfe76SSatish Balay } 2163026e39d0SSatish Balay 21645615d1e5SSatish Balay #undef __FUNC__ 21652e8a6d31SBarry Smith #define __FUNC__ "MatDuplicate_MPIBAIJ" 21662e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 21670ac07820SSatish Balay { 21680ac07820SSatish Balay Mat mat; 21690ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data; 21700ac07820SSatish Balay int ierr, len=0, flg; 21710ac07820SSatish Balay 2172d64ed03dSBarry Smith PetscFunctionBegin; 21730ac07820SSatish Balay *newmat = 0; 21743f1db9ecSBarry Smith PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",matin->comm,MatDestroy,MatView); 21750ac07820SSatish Balay PLogObjectCreate(mat); 21760ac07820SSatish Balay mat->data = (void *) (a = PetscNew(Mat_MPIBAIJ));CHKPTRQ(a); 2177549d3d68SSatish Balay ierr = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 2178e1311b90SBarry Smith mat->ops->destroy = MatDestroy_MPIBAIJ; 2179e1311b90SBarry Smith mat->ops->view = MatView_MPIBAIJ; 21800ac07820SSatish Balay mat->factor = matin->factor; 21810ac07820SSatish Balay mat->assembled = PETSC_TRUE; 2182aef5e8e0SSatish Balay mat->insertmode = NOT_SET_VALUES; 21830ac07820SSatish Balay 21840ac07820SSatish Balay a->m = mat->m = oldmat->m; 21850ac07820SSatish Balay a->n = mat->n = oldmat->n; 21860ac07820SSatish Balay a->M = mat->M = oldmat->M; 21870ac07820SSatish Balay a->N = mat->N = oldmat->N; 21880ac07820SSatish Balay 21890ac07820SSatish Balay a->bs = oldmat->bs; 21900ac07820SSatish Balay a->bs2 = oldmat->bs2; 21910ac07820SSatish Balay a->mbs = oldmat->mbs; 21920ac07820SSatish Balay a->nbs = oldmat->nbs; 21930ac07820SSatish Balay a->Mbs = oldmat->Mbs; 21940ac07820SSatish Balay a->Nbs = oldmat->Nbs; 21950ac07820SSatish Balay 21960ac07820SSatish Balay a->rstart = oldmat->rstart; 21970ac07820SSatish Balay a->rend = oldmat->rend; 21980ac07820SSatish Balay a->cstart = oldmat->cstart; 21990ac07820SSatish Balay a->cend = oldmat->cend; 22000ac07820SSatish Balay a->size = oldmat->size; 22010ac07820SSatish Balay a->rank = oldmat->rank; 2202aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 2203aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 2204aef5e8e0SSatish Balay a->rowindices = 0; 22050ac07820SSatish Balay a->rowvalues = 0; 22060ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 220730793edcSSatish Balay a->barray = 0; 22083123a43fSSatish Balay a->rstart_bs = oldmat->rstart_bs; 22093123a43fSSatish Balay a->rend_bs = oldmat->rend_bs; 22103123a43fSSatish Balay a->cstart_bs = oldmat->cstart_bs; 22113123a43fSSatish Balay a->cend_bs = oldmat->cend_bs; 22120ac07820SSatish Balay 2213133cdb44SSatish Balay /* hash table stuff */ 2214133cdb44SSatish Balay a->ht = 0; 2215133cdb44SSatish Balay a->hd = 0; 2216133cdb44SSatish Balay a->ht_size = 0; 2217133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 221825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 2219133cdb44SSatish Balay a->ht_total_ct = 0; 2220133cdb44SSatish Balay a->ht_insert_ct = 0; 2221133cdb44SSatish Balay 2222133cdb44SSatish Balay 2223ff2fd236SBarry Smith a->rowners = (int *) PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners); 2224ff2fd236SBarry Smith PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ)); 22250ac07820SSatish Balay a->cowners = a->rowners + a->size + 2; 2226ff2fd236SBarry Smith a->rowners_bs = a->cowners + a->size + 2; 2227549d3d68SSatish Balay ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr); 22288798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr); 22298798bf22SSatish Balay ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr); 22300ac07820SSatish Balay if (oldmat->colmap) { 2231aa482453SBarry Smith #if defined (PETSC_USE_CTABLE) 2232fa46199cSSatish Balay ierr = TableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 223348e59246SSatish Balay #else 22340ac07820SSatish Balay a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap); 22350ac07820SSatish Balay PLogObjectMemory(mat,(a->Nbs)*sizeof(int)); 2236549d3d68SSatish Balay ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr); 223748e59246SSatish Balay #endif 22380ac07820SSatish Balay } else a->colmap = 0; 22390ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) { 22400ac07820SSatish Balay a->garray = (int *) PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray); 22410ac07820SSatish Balay PLogObjectMemory(mat,len*sizeof(int)); 2242549d3d68SSatish Balay ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr); 22430ac07820SSatish Balay } else a->garray = 0; 22440ac07820SSatish Balay 22450ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 22460ac07820SSatish Balay PLogObjectParent(mat,a->lvec); 22470ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 2248e18c124aSSatish Balay 22490ac07820SSatish Balay PLogObjectParent(mat,a->Mvctx); 22502e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 22510ac07820SSatish Balay PLogObjectParent(mat,a->A); 22522e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 22530ac07820SSatish Balay PLogObjectParent(mat,a->B); 22540ac07820SSatish Balay ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr); 2255e18c124aSSatish Balay ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr); 22560ac07820SSatish Balay if (flg) { 22570ac07820SSatish Balay ierr = MatPrintHelp(mat);CHKERRQ(ierr); 22580ac07820SSatish Balay } 22590ac07820SSatish Balay *newmat = mat; 22603a40ed3dSBarry Smith PetscFunctionReturn(0); 22610ac07820SSatish Balay } 226257b952d6SSatish Balay 226357b952d6SSatish Balay #include "sys.h" 226457b952d6SSatish Balay 22655615d1e5SSatish Balay #undef __FUNC__ 22665615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ" 226757b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat) 226857b952d6SSatish Balay { 226957b952d6SSatish Balay Mat A; 227057b952d6SSatish Balay int i, nz, ierr, j,rstart, rend, fd; 227157b952d6SSatish Balay Scalar *vals,*buf; 227257b952d6SSatish Balay MPI_Comm comm = ((PetscObject)viewer)->comm; 227357b952d6SSatish Balay MPI_Status status; 2274cee3aa6bSSatish Balay int header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols; 227557b952d6SSatish Balay int *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf; 227640011551SBarry Smith int flg,tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows; 227757b952d6SSatish Balay int *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount; 227857b952d6SSatish Balay int dcount,kmax,k,nzcount,tmp; 227957b952d6SSatish Balay 2280d64ed03dSBarry Smith PetscFunctionBegin; 228157b952d6SSatish Balay ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr); 228257b952d6SSatish Balay 2283d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 2284d132466eSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 228557b952d6SSatish Balay if (!rank) { 228657b952d6SSatish Balay ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 2287e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr); 2288a8c6a408SBarry Smith if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object"); 2289d64ed03dSBarry Smith if (header[3] < 0) { 2290a8c6a408SBarry Smith SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ"); 2291d64ed03dSBarry Smith } 22926c5fab8fSBarry Smith } 2293d64ed03dSBarry Smith 2294ca161407SBarry Smith ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr); 229557b952d6SSatish Balay M = header[1]; N = header[2]; 229657b952d6SSatish Balay 2297a8c6a408SBarry Smith if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices"); 229857b952d6SSatish Balay 229957b952d6SSatish Balay /* 230057b952d6SSatish Balay This code adds extra rows to make sure the number of rows is 230157b952d6SSatish Balay divisible by the blocksize 230257b952d6SSatish Balay */ 230357b952d6SSatish Balay Mbs = M/bs; 230457b952d6SSatish Balay extra_rows = bs - M + bs*(Mbs); 230557b952d6SSatish Balay if (extra_rows == bs) extra_rows = 0; 230657b952d6SSatish Balay else Mbs++; 230757b952d6SSatish Balay if (extra_rows &&!rank) { 2308b0267e0aSLois Curfman McInnes PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n"); 230957b952d6SSatish Balay } 2310537820f0SBarry Smith 231157b952d6SSatish Balay /* determine ownership of all rows */ 231257b952d6SSatish Balay mbs = Mbs/size + ((Mbs % size) > rank); 231357b952d6SSatish Balay m = mbs * bs; 2314cee3aa6bSSatish Balay rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners); 2315cee3aa6bSSatish Balay browners = rowners + size + 1; 2316ca161407SBarry Smith ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr); 231757b952d6SSatish Balay rowners[0] = 0; 2318cee3aa6bSSatish Balay for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1]; 2319cee3aa6bSSatish Balay for ( i=0; i<=size; i++ ) browners[i] = rowners[i]*bs; 232057b952d6SSatish Balay rstart = rowners[rank]; 232157b952d6SSatish Balay rend = rowners[rank+1]; 232257b952d6SSatish Balay 232357b952d6SSatish Balay /* distribute row lengths to all processors */ 232457b952d6SSatish Balay locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) );CHKPTRQ(locrowlens); 232557b952d6SSatish Balay if (!rank) { 232657b952d6SSatish Balay rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) );CHKPTRQ(rowlengths); 2327e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr); 232857b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1; 232957b952d6SSatish Balay sndcounts = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(sndcounts); 2330cee3aa6bSSatish Balay for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i]; 2331ca161407SBarry Smith ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr); 2332606d414cSSatish Balay ierr = PetscFree(sndcounts);CHKERRQ(ierr); 2333d64ed03dSBarry Smith } else { 2334ca161407SBarry Smith ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr); 233557b952d6SSatish Balay } 233657b952d6SSatish Balay 233757b952d6SSatish Balay if (!rank) { 233857b952d6SSatish Balay /* calculate the number of nonzeros on each processor */ 233957b952d6SSatish Balay procsnz = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(procsnz); 2340549d3d68SSatish Balay ierr = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr); 234157b952d6SSatish Balay for ( i=0; i<size; i++ ) { 234257b952d6SSatish Balay for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) { 234357b952d6SSatish Balay procsnz[i] += rowlengths[j]; 234457b952d6SSatish Balay } 234557b952d6SSatish Balay } 2346606d414cSSatish Balay ierr = PetscFree(rowlengths);CHKERRQ(ierr); 234757b952d6SSatish Balay 234857b952d6SSatish Balay /* determine max buffer needed and allocate it */ 234957b952d6SSatish Balay maxnz = 0; 235057b952d6SSatish Balay for ( i=0; i<size; i++ ) { 235157b952d6SSatish Balay maxnz = PetscMax(maxnz,procsnz[i]); 235257b952d6SSatish Balay } 235357b952d6SSatish Balay cols = (int *) PetscMalloc( maxnz*sizeof(int) );CHKPTRQ(cols); 235457b952d6SSatish Balay 235557b952d6SSatish Balay /* read in my part of the matrix column indices */ 235657b952d6SSatish Balay nz = procsnz[0]; 235757b952d6SSatish Balay ibuf = (int *) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf); 235857b952d6SSatish Balay mycols = ibuf; 2359cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2360e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 2361cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; } 2362cee3aa6bSSatish Balay 236357b952d6SSatish Balay /* read in every ones (except the last) and ship off */ 236457b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 236557b952d6SSatish Balay nz = procsnz[i]; 2366e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 2367ca161407SBarry Smith ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr); 236857b952d6SSatish Balay } 236957b952d6SSatish Balay /* read in the stuff for the last proc */ 237057b952d6SSatish Balay if ( size != 1 ) { 237157b952d6SSatish Balay nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 2372e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 237357b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i; 2374ca161407SBarry Smith ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr); 237557b952d6SSatish Balay } 2376606d414cSSatish Balay ierr = PetscFree(cols);CHKERRQ(ierr); 2377d64ed03dSBarry Smith } else { 237857b952d6SSatish Balay /* determine buffer space needed for message */ 237957b952d6SSatish Balay nz = 0; 238057b952d6SSatish Balay for ( i=0; i<m; i++ ) { 238157b952d6SSatish Balay nz += locrowlens[i]; 238257b952d6SSatish Balay } 238357b952d6SSatish Balay ibuf = (int*) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf); 238457b952d6SSatish Balay mycols = ibuf; 238557b952d6SSatish Balay /* receive message of column indices*/ 2386ca161407SBarry Smith ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr); 2387ca161407SBarry Smith ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr); 2388a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 238957b952d6SSatish Balay } 239057b952d6SSatish Balay 239157b952d6SSatish Balay /* loop over local rows, determining number of off diagonal entries */ 2392cee3aa6bSSatish Balay dlens = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) );CHKPTRQ(dlens); 2393cee3aa6bSSatish Balay odlens = dlens + (rend-rstart); 239457b952d6SSatish Balay mask = (int *) PetscMalloc( 3*Mbs*sizeof(int) );CHKPTRQ(mask); 2395549d3d68SSatish Balay ierr = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr); 239657b952d6SSatish Balay masked1 = mask + Mbs; 239757b952d6SSatish Balay masked2 = masked1 + Mbs; 239857b952d6SSatish Balay rowcount = 0; nzcount = 0; 239957b952d6SSatish Balay for ( i=0; i<mbs; i++ ) { 240057b952d6SSatish Balay dcount = 0; 240157b952d6SSatish Balay odcount = 0; 240257b952d6SSatish Balay for ( j=0; j<bs; j++ ) { 240357b952d6SSatish Balay kmax = locrowlens[rowcount]; 240457b952d6SSatish Balay for ( k=0; k<kmax; k++ ) { 240557b952d6SSatish Balay tmp = mycols[nzcount++]/bs; 240657b952d6SSatish Balay if (!mask[tmp]) { 240757b952d6SSatish Balay mask[tmp] = 1; 240857b952d6SSatish Balay if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp; 240957b952d6SSatish Balay else masked1[dcount++] = tmp; 241057b952d6SSatish Balay } 241157b952d6SSatish Balay } 241257b952d6SSatish Balay rowcount++; 241357b952d6SSatish Balay } 2414cee3aa6bSSatish Balay 241557b952d6SSatish Balay dlens[i] = dcount; 241657b952d6SSatish Balay odlens[i] = odcount; 2417cee3aa6bSSatish Balay 241857b952d6SSatish Balay /* zero out the mask elements we set */ 241957b952d6SSatish Balay for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0; 242057b952d6SSatish Balay for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0; 242157b952d6SSatish Balay } 2422cee3aa6bSSatish Balay 242357b952d6SSatish Balay /* create our matrix */ 2424549d3d68SSatish Balay ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr); 242557b952d6SSatish Balay A = *newmat; 24266d4a8577SBarry Smith MatSetOption(A,MAT_COLUMNS_SORTED); 242757b952d6SSatish Balay 242857b952d6SSatish Balay if (!rank) { 242957b952d6SSatish Balay buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) );CHKPTRQ(buf); 243057b952d6SSatish Balay /* read in my part of the matrix numerical values */ 243157b952d6SSatish Balay nz = procsnz[0]; 243257b952d6SSatish Balay vals = buf; 2433cee3aa6bSSatish Balay mycols = ibuf; 2434cee3aa6bSSatish Balay if (size == 1) nz -= extra_rows; 2435e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2436cee3aa6bSSatish Balay if (size == 1) for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; } 2437537820f0SBarry Smith 243857b952d6SSatish Balay /* insert into matrix */ 243957b952d6SSatish Balay jj = rstart*bs; 244057b952d6SSatish Balay for ( i=0; i<m; i++ ) { 244157b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 244257b952d6SSatish Balay mycols += locrowlens[i]; 244357b952d6SSatish Balay vals += locrowlens[i]; 244457b952d6SSatish Balay jj++; 244557b952d6SSatish Balay } 244657b952d6SSatish Balay /* read in other processors (except the last one) and ship out */ 244757b952d6SSatish Balay for ( i=1; i<size-1; i++ ) { 244857b952d6SSatish Balay nz = procsnz[i]; 244957b952d6SSatish Balay vals = buf; 2450e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 2451ca161407SBarry Smith ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr); 245257b952d6SSatish Balay } 245357b952d6SSatish Balay /* the last proc */ 245457b952d6SSatish Balay if ( size != 1 ){ 245557b952d6SSatish Balay nz = procsnz[i] - extra_rows; 2456cee3aa6bSSatish Balay vals = buf; 2457e5638eb3SBarry Smith ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 245857b952d6SSatish Balay for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0; 2459ca161407SBarry Smith ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr); 246057b952d6SSatish Balay } 2461606d414cSSatish Balay ierr = PetscFree(procsnz);CHKERRQ(ierr); 2462d64ed03dSBarry Smith } else { 246357b952d6SSatish Balay /* receive numeric values */ 246457b952d6SSatish Balay buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) );CHKPTRQ(buf); 246557b952d6SSatish Balay 246657b952d6SSatish Balay /* receive message of values*/ 246757b952d6SSatish Balay vals = buf; 2468cee3aa6bSSatish Balay mycols = ibuf; 2469ca161407SBarry Smith ierr = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr); 2470ca161407SBarry Smith ierr = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr); 2471a8c6a408SBarry Smith if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file"); 247257b952d6SSatish Balay 247357b952d6SSatish Balay /* insert into matrix */ 247457b952d6SSatish Balay jj = rstart*bs; 2475cee3aa6bSSatish Balay for ( i=0; i<m; i++ ) { 247657b952d6SSatish Balay ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 247757b952d6SSatish Balay mycols += locrowlens[i]; 247857b952d6SSatish Balay vals += locrowlens[i]; 247957b952d6SSatish Balay jj++; 248057b952d6SSatish Balay } 248157b952d6SSatish Balay } 2482606d414cSSatish Balay ierr = PetscFree(locrowlens);CHKERRQ(ierr); 2483606d414cSSatish Balay ierr = PetscFree(buf);CHKERRQ(ierr); 2484606d414cSSatish Balay ierr = PetscFree(ibuf);CHKERRQ(ierr); 2485606d414cSSatish Balay ierr = PetscFree(rowners);CHKERRQ(ierr); 2486606d414cSSatish Balay ierr = PetscFree(dlens);CHKERRQ(ierr); 2487606d414cSSatish Balay ierr = PetscFree(mask);CHKERRQ(ierr); 24886d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24896d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 24903a40ed3dSBarry Smith PetscFunctionReturn(0); 249157b952d6SSatish Balay } 249257b952d6SSatish Balay 2493133cdb44SSatish Balay #undef __FUNC__ 2494133cdb44SSatish Balay #define __FUNC__ "MatMPIBAIJSetHashTableFactor" 2495133cdb44SSatish Balay /*@ 2496133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 2497133cdb44SSatish Balay 2498133cdb44SSatish Balay Input Parameters: 2499133cdb44SSatish Balay . mat - the matrix 2500133cdb44SSatish Balay . fact - factor 2501133cdb44SSatish Balay 2502fee21e36SBarry Smith Collective on Mat 2503fee21e36SBarry Smith 25048c890885SBarry Smith Level: advanced 25058c890885SBarry Smith 2506133cdb44SSatish Balay Notes: 2507133cdb44SSatish Balay This can also be set by the command line option: -mat_use_hash_table fact 2508133cdb44SSatish Balay 2509133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 2510133cdb44SSatish Balay 2511133cdb44SSatish Balay .seealso: MatSetOption() 2512133cdb44SSatish Balay @*/ 2513133cdb44SSatish Balay int MatMPIBAIJSetHashTableFactor(Mat mat,double fact) 2514133cdb44SSatish Balay { 251525fdafccSSatish Balay Mat_MPIBAIJ *baij; 2516133cdb44SSatish Balay 2517133cdb44SSatish Balay PetscFunctionBegin; 2518133cdb44SSatish Balay PetscValidHeaderSpecific(mat,MAT_COOKIE); 251925fdafccSSatish Balay if (mat->type != MATMPIBAIJ) { 2520133cdb44SSatish Balay SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only."); 2521133cdb44SSatish Balay } 2522133cdb44SSatish Balay baij = (Mat_MPIBAIJ*) mat->data; 2523133cdb44SSatish Balay baij->ht_fact = fact; 2524133cdb44SSatish Balay PetscFunctionReturn(0); 2525133cdb44SSatish Balay } 2526