xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 454a90a3eb7bca6958262e5eca1eb393ad97e108)
1a5eb4965SSatish Balay #ifdef PETSC_RCS_HEADER
2*454a90a3SBarry Smith static char vcid[] = "$Id: mpibaij.c,v 1.178 1999/09/21 14:41:06 bsmith Exp bsmith $";
379bdfe76SSatish Balay #endif
479bdfe76SSatish Balay 
577ed5343SBarry Smith #include "src/mat/impls/baij/mpi/mpibaij.h"   /*I  "mat.h"  I*/
6c16cb8f2SBarry Smith #include "src/vec/vecimpl.h"
779bdfe76SSatish Balay 
857b952d6SSatish Balay extern int MatSetUpMultiply_MPIBAIJ(Mat);
957b952d6SSatish Balay extern int DisAssemble_MPIBAIJ(Mat);
10d212a18eSSatish Balay extern int MatIncreaseOverlap_MPIBAIJ(Mat,int,IS *,int);
117b2a1423SBarry Smith extern int MatGetSubMatrices_MPIBAIJ(Mat,int,IS *,IS *,MatReuse,Mat **);
12946de2abSSatish Balay extern int MatGetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *);
13bbb85fb3SSatish Balay extern int MatSetValues_SeqBAIJ(Mat,int,int *,int,int *,Scalar *,InsertMode);
14bbb85fb3SSatish Balay extern int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,Scalar*,InsertMode);
15bbb85fb3SSatish Balay extern int MatGetRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
16bbb85fb3SSatish Balay extern int MatRestoreRow_SeqBAIJ(Mat,int,int*,int**,Scalar**);
17bbb85fb3SSatish Balay extern int MatPrintHelp_SeqBAIJ(Mat);
183b2fbd54SBarry Smith 
197fc3c18eSBarry Smith EXTERN_C_BEGIN
207fc3c18eSBarry Smith #undef __FUNC__
217fc3c18eSBarry Smith #define __FUNC__ "MatStoreValues_MPIBAIJ"
227fc3c18eSBarry Smith int MatStoreValues_MPIBAIJ(Mat mat)
237fc3c18eSBarry Smith {
247fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
257fc3c18eSBarry Smith   int         ierr;
267fc3c18eSBarry Smith 
277fc3c18eSBarry Smith   PetscFunctionBegin;
287fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
297fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
307fc3c18eSBarry Smith   PetscFunctionReturn(0);
317fc3c18eSBarry Smith }
327fc3c18eSBarry Smith EXTERN_C_END
337fc3c18eSBarry Smith 
347fc3c18eSBarry Smith EXTERN_C_BEGIN
357fc3c18eSBarry Smith #undef __FUNC__
367fc3c18eSBarry Smith #define __FUNC__ "MatRetrieveValues_MPIBAIJ"
377fc3c18eSBarry Smith int MatRetrieveValues_MPIBAIJ(Mat mat)
387fc3c18eSBarry Smith {
397fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
407fc3c18eSBarry Smith   int         ierr;
417fc3c18eSBarry Smith 
427fc3c18eSBarry Smith   PetscFunctionBegin;
437fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
447fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
457fc3c18eSBarry Smith   PetscFunctionReturn(0);
467fc3c18eSBarry Smith }
477fc3c18eSBarry Smith EXTERN_C_END
487fc3c18eSBarry Smith 
49537820f0SBarry Smith /*
50537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
5157b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
5257b952d6SSatish Balay    storage of the matrix.  This is done in a non scable way since the
5357b952d6SSatish Balay    length of colmap equals the global matrix length.
5457b952d6SSatish Balay */
555615d1e5SSatish Balay #undef __FUNC__
565615d1e5SSatish Balay #define __FUNC__ "CreateColmap_MPIBAIJ_Private"
5757b952d6SSatish Balay static int CreateColmap_MPIBAIJ_Private(Mat mat)
5857b952d6SSatish Balay {
5957b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
6057b952d6SSatish Balay   Mat_SeqBAIJ *B = (Mat_SeqBAIJ*) baij->B->data;
61dc2900e9SSatish Balay   int         nbs = B->nbs,i,bs=B->bs,ierr;
6257b952d6SSatish Balay 
63d64ed03dSBarry Smith   PetscFunctionBegin;
64aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
65fa46199cSSatish Balay   ierr = TableCreate(baij->nbs/5,&baij->colmap);CHKERRQ(ierr);
6648e59246SSatish Balay   for ( i=0; i<nbs; i++ ){
6748e59246SSatish Balay     ierr = TableAdd(baij->colmap,baij->garray[i]+1,i*bs+1);CHKERRQ(ierr);
6848e59246SSatish Balay   }
6948e59246SSatish Balay #else
70758f045eSSatish Balay   baij->colmap = (int *) PetscMalloc((baij->Nbs+1)*sizeof(int));CHKPTRQ(baij->colmap);
7157b952d6SSatish Balay   PLogObjectMemory(mat,baij->Nbs*sizeof(int));
72549d3d68SSatish Balay   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(int));CHKERRQ(ierr);
73928fc39bSSatish Balay   for ( i=0; i<nbs; i++ ) baij->colmap[baij->garray[i]] = i*bs+1;
7448e59246SSatish Balay #endif
753a40ed3dSBarry Smith   PetscFunctionReturn(0);
7657b952d6SSatish Balay }
7757b952d6SSatish Balay 
7880c1aa95SSatish Balay #define CHUNKSIZE  10
7980c1aa95SSatish Balay 
80f5e9677aSSatish Balay #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv) \
8180c1aa95SSatish Balay { \
8280c1aa95SSatish Balay  \
8380c1aa95SSatish Balay     brow = row/bs;  \
8480c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
85ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
8680c1aa95SSatish Balay       bcol = col/bs; \
8780c1aa95SSatish Balay       ridx = row % bs; cidx = col % bs; \
88ab26458aSBarry Smith       low = 0; high = nrow; \
89ab26458aSBarry Smith       while (high-low > 3) { \
90ab26458aSBarry Smith         t = (low+high)/2; \
91ab26458aSBarry Smith         if (rp[t] > bcol) high = t; \
92ab26458aSBarry Smith         else              low  = t; \
93ab26458aSBarry Smith       } \
94ab26458aSBarry Smith       for ( _i=low; _i<high; _i++ ) { \
9580c1aa95SSatish Balay         if (rp[_i] > bcol) break; \
9680c1aa95SSatish Balay         if (rp[_i] == bcol) { \
9780c1aa95SSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
98eada6651SSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
99eada6651SSatish Balay           else                    *bap  = value;  \
100ac7a638eSSatish Balay           goto a_noinsert; \
10180c1aa95SSatish Balay         } \
10280c1aa95SSatish Balay       } \
10389280ab3SLois Curfman McInnes       if (a->nonew == 1) goto a_noinsert; \
104a8c6a408SBarry Smith       else if (a->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
10580c1aa95SSatish Balay       if (nrow >= rmax) { \
10680c1aa95SSatish Balay         /* there is no extra room in row, therefore enlarge */ \
10780c1aa95SSatish Balay         int    new_nz = ai[a->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
10880c1aa95SSatish Balay         Scalar *new_a; \
10980c1aa95SSatish Balay  \
110a8c6a408SBarry Smith         if (a->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
11189280ab3SLois Curfman McInnes  \
11280c1aa95SSatish Balay         /* malloc new storage space */ \
11380c1aa95SSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(a->mbs+1)*sizeof(int); \
11480c1aa95SSatish Balay         new_a   = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \
11580c1aa95SSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
11680c1aa95SSatish Balay         new_i   = new_j + new_nz; \
11780c1aa95SSatish Balay  \
11880c1aa95SSatish Balay         /* copy over old data into new slots */ \
11980c1aa95SSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = ai[ii];} \
12080c1aa95SSatish Balay         for ( ii=brow+1; ii<a->mbs+1; ii++ ) {new_i[ii] = ai[ii]+CHUNKSIZE;} \
121549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,aj,(ai[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
12280c1aa95SSatish Balay         len = (new_nz - CHUNKSIZE - ai[brow] - nrow); \
123549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+ai[brow]+nrow+CHUNKSIZE,aj+ai[brow]+nrow, \
124549d3d68SSatish Balay                           len*sizeof(int));CHKERRQ(ierr); \
125549d3d68SSatish Balay         ierr = PetscMemcpy(new_a,aa,(ai[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \
126549d3d68SSatish Balay         ierr = PetscMemzero(new_a+bs2*(ai[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \
127549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(ai[brow]+nrow+CHUNKSIZE), \
128549d3d68SSatish Balay                     aa+bs2*(ai[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr);  \
12980c1aa95SSatish Balay         /* free up old matrix storage */ \
130606d414cSSatish Balay         ierr = PetscFree(a->a);CHKERRQ(ierr);  \
131606d414cSSatish Balay         if (!a->singlemalloc) { \
132606d414cSSatish Balay           ierr = PetscFree(a->i);CHKERRQ(ierr); \
133606d414cSSatish Balay           ierr = PetscFree(a->j);CHKERRQ(ierr);\
134606d414cSSatish Balay         } \
13580c1aa95SSatish Balay         aa = a->a = new_a; ai = a->i = new_i; aj = a->j = new_j;  \
13680c1aa95SSatish Balay         a->singlemalloc = 1; \
13780c1aa95SSatish Balay  \
13880c1aa95SSatish Balay         rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
139ac7a638eSSatish Balay         rmax = aimax[brow] = aimax[brow] + CHUNKSIZE; \
14080c1aa95SSatish Balay         PLogObjectMemory(A,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
14180c1aa95SSatish Balay         a->maxnz += bs2*CHUNKSIZE; \
14280c1aa95SSatish Balay         a->reallocs++; \
14380c1aa95SSatish Balay         a->nz++; \
14480c1aa95SSatish Balay       } \
14580c1aa95SSatish Balay       N = nrow++ - 1;  \
14680c1aa95SSatish Balay       /* shift up all the later entries in this row */ \
14780c1aa95SSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
14880c1aa95SSatish Balay         rp[ii+1] = rp[ii]; \
149549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \
15080c1aa95SSatish Balay       } \
151549d3d68SSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr); }  \
15280c1aa95SSatish Balay       rp[_i]                      = bcol;  \
15380c1aa95SSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
154ac7a638eSSatish Balay       a_noinsert:; \
15580c1aa95SSatish Balay     ailen[brow] = nrow; \
15680c1aa95SSatish Balay }
15757b952d6SSatish Balay 
158ac7a638eSSatish Balay #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv) \
159ac7a638eSSatish Balay { \
160ac7a638eSSatish Balay  \
161ac7a638eSSatish Balay     brow = row/bs;  \
162ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
163ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
164ac7a638eSSatish Balay       bcol = col/bs; \
165ac7a638eSSatish Balay       ridx = row % bs; cidx = col % bs; \
166ac7a638eSSatish Balay       low = 0; high = nrow; \
167ac7a638eSSatish Balay       while (high-low > 3) { \
168ac7a638eSSatish Balay         t = (low+high)/2; \
169ac7a638eSSatish Balay         if (rp[t] > bcol) high = t; \
170ac7a638eSSatish Balay         else              low  = t; \
171ac7a638eSSatish Balay       } \
172ac7a638eSSatish Balay       for ( _i=low; _i<high; _i++ ) { \
173ac7a638eSSatish Balay         if (rp[_i] > bcol) break; \
174ac7a638eSSatish Balay         if (rp[_i] == bcol) { \
175ac7a638eSSatish Balay           bap  = ap +  bs2*_i + bs*cidx + ridx; \
176ac7a638eSSatish Balay           if (addv == ADD_VALUES) *bap += value;  \
177ac7a638eSSatish Balay           else                    *bap  = value;  \
178ac7a638eSSatish Balay           goto b_noinsert; \
179ac7a638eSSatish Balay         } \
180ac7a638eSSatish Balay       } \
18189280ab3SLois Curfman McInnes       if (b->nonew == 1) goto b_noinsert; \
182a8c6a408SBarry Smith       else if (b->nonew == -1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero into matrix"); \
183ac7a638eSSatish Balay       if (nrow >= rmax) { \
184ac7a638eSSatish Balay         /* there is no extra room in row, therefore enlarge */ \
18574c639caSSatish Balay         int    new_nz = bi[b->mbs] + CHUNKSIZE,len,*new_i,*new_j; \
186ac7a638eSSatish Balay         Scalar *new_a; \
187ac7a638eSSatish Balay  \
188a8c6a408SBarry Smith         if (b->nonew == -2) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Inserting a new nonzero in the matrix"); \
18989280ab3SLois Curfman McInnes  \
190ac7a638eSSatish Balay         /* malloc new storage space */ \
19174c639caSSatish Balay         len     = new_nz*(sizeof(int)+bs2*sizeof(Scalar))+(b->mbs+1)*sizeof(int); \
192ac7a638eSSatish Balay         new_a   = (Scalar *) PetscMalloc( len );CHKPTRQ(new_a); \
193ac7a638eSSatish Balay         new_j   = (int *) (new_a + bs2*new_nz); \
194ac7a638eSSatish Balay         new_i   = new_j + new_nz; \
195ac7a638eSSatish Balay  \
196ac7a638eSSatish Balay         /* copy over old data into new slots */ \
197ac7a638eSSatish Balay         for ( ii=0; ii<brow+1; ii++ ) {new_i[ii] = bi[ii];} \
19874c639caSSatish Balay         for ( ii=brow+1; ii<b->mbs+1; ii++ ) {new_i[ii] = bi[ii]+CHUNKSIZE;} \
199549d3d68SSatish Balay         ierr = PetscMemcpy(new_j,bj,(bi[brow]+nrow)*sizeof(int));CHKERRQ(ierr); \
200ac7a638eSSatish Balay         len = (new_nz - CHUNKSIZE - bi[brow] - nrow); \
201549d3d68SSatish Balay         ierr = PetscMemcpy(new_j+bi[brow]+nrow+CHUNKSIZE,bj+bi[brow]+nrow, \
202549d3d68SSatish Balay                            len*sizeof(int));CHKERRQ(ierr); \
203549d3d68SSatish Balay         ierr = PetscMemcpy(new_a,ba,(bi[brow]+nrow)*bs2*sizeof(Scalar));CHKERRQ(ierr); \
204549d3d68SSatish Balay         ierr = PetscMemzero(new_a+bs2*(bi[brow]+nrow),bs2*CHUNKSIZE*sizeof(Scalar));CHKERRQ(ierr); \
205549d3d68SSatish Balay         ierr = PetscMemcpy(new_a+bs2*(bi[brow]+nrow+CHUNKSIZE), \
206549d3d68SSatish Balay                     ba+bs2*(bi[brow]+nrow),bs2*len*sizeof(Scalar));CHKERRQ(ierr);  \
207ac7a638eSSatish Balay         /* free up old matrix storage */ \
208606d414cSSatish Balay         ierr = PetscFree(b->a);CHKERRQ(ierr);  \
209606d414cSSatish Balay         if (!b->singlemalloc) { \
210606d414cSSatish Balay           ierr = PetscFree(b->i);CHKERRQ(ierr); \
211606d414cSSatish Balay           ierr = PetscFree(b->j);CHKERRQ(ierr); \
212606d414cSSatish Balay         } \
21374c639caSSatish Balay         ba = b->a = new_a; bi = b->i = new_i; bj = b->j = new_j;  \
21474c639caSSatish Balay         b->singlemalloc = 1; \
215ac7a638eSSatish Balay  \
216ac7a638eSSatish Balay         rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
217ac7a638eSSatish Balay         rmax = bimax[brow] = bimax[brow] + CHUNKSIZE; \
21874c639caSSatish Balay         PLogObjectMemory(B,CHUNKSIZE*(sizeof(int) + bs2*sizeof(Scalar))); \
21974c639caSSatish Balay         b->maxnz += bs2*CHUNKSIZE; \
22074c639caSSatish Balay         b->reallocs++; \
22174c639caSSatish Balay         b->nz++; \
222ac7a638eSSatish Balay       } \
223ac7a638eSSatish Balay       N = nrow++ - 1;  \
224ac7a638eSSatish Balay       /* shift up all the later entries in this row */ \
225ac7a638eSSatish Balay       for ( ii=N; ii>=_i; ii-- ) { \
226ac7a638eSSatish Balay         rp[ii+1] = rp[ii]; \
227549d3d68SSatish Balay         ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(Scalar));CHKERRQ(ierr); \
228ac7a638eSSatish Balay       } \
229549d3d68SSatish Balay       if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(Scalar));CHKERRQ(ierr);}  \
230ac7a638eSSatish Balay       rp[_i]                      = bcol;  \
231ac7a638eSSatish Balay       ap[bs2*_i + bs*cidx + ridx] = value;  \
232ac7a638eSSatish Balay       b_noinsert:; \
233ac7a638eSSatish Balay     bilen[brow] = nrow; \
234ac7a638eSSatish Balay }
235ac7a638eSSatish Balay 
2365615d1e5SSatish Balay #undef __FUNC__
2375615d1e5SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ"
238ec1ea8d8SLois Curfman McInnes int MatSetValues_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
23957b952d6SSatish Balay {
24057b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
24157b952d6SSatish Balay   Scalar      value;
2424fa0d573SSatish Balay   int         ierr,i,j,row,col;
2434fa0d573SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
2444fa0d573SSatish Balay   int         rend_orig=baij->rend_bs,cstart_orig=baij->cstart_bs;
2454fa0d573SSatish Balay   int         cend_orig=baij->cend_bs,bs=baij->bs;
24657b952d6SSatish Balay 
247eada6651SSatish Balay   /* Some Variables required in the macro */
24880c1aa95SSatish Balay   Mat         A = baij->A;
24980c1aa95SSatish Balay   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *) (A)->data;
250ac7a638eSSatish Balay   int         *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
251ac7a638eSSatish Balay   Scalar      *aa=a->a;
252ac7a638eSSatish Balay 
253ac7a638eSSatish Balay   Mat         B = baij->B;
254ac7a638eSSatish Balay   Mat_SeqBAIJ *b = (Mat_SeqBAIJ *) (B)->data;
255ac7a638eSSatish Balay   int         *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
256ac7a638eSSatish Balay   Scalar      *ba=b->a;
257ac7a638eSSatish Balay 
258ac7a638eSSatish Balay   int         *rp,ii,nrow,_i,rmax,N,brow,bcol;
259ab26458aSBarry Smith   int         low,high,t,ridx,cidx,bs2=a->bs2;
260ac7a638eSSatish Balay   Scalar      *ap,*bap;
26180c1aa95SSatish Balay 
262d64ed03dSBarry Smith   PetscFunctionBegin;
26357b952d6SSatish Balay   for ( i=0; i<m; i++ ) {
2645ef9f2a5SBarry Smith     if (im[i] < 0) continue;
265aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
266a8c6a408SBarry Smith     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
267639f9d9dSBarry Smith #endif
26857b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
26957b952d6SSatish Balay       row = im[i] - rstart_orig;
27057b952d6SSatish Balay       for ( j=0; j<n; j++ ) {
27157b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig){
27257b952d6SSatish Balay           col = in[j] - cstart_orig;
27357b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
274f5e9677aSSatish Balay           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv);
27580c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
27673959e64SBarry Smith         } else if (in[j] < 0) continue;
277aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
278a8c6a408SBarry Smith         else if (in[j] >= baij->N) {SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Col too large");}
279639f9d9dSBarry Smith #endif
28057b952d6SSatish Balay         else {
28157b952d6SSatish Balay           if (mat->was_assembled) {
282905e6a2fSBarry Smith             if (!baij->colmap) {
283905e6a2fSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
284905e6a2fSBarry Smith             }
285aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
286fa46199cSSatish Balay             ierr = TableFind(baij->colmap, in[j]/bs + 1,&col);CHKERRQ(ierr);
287fa46199cSSatish Balay             col  = col - 1 + in[j]%bs;
28848e59246SSatish Balay #else
289905e6a2fSBarry Smith             col = baij->colmap[in[j]/bs] - 1 + in[j]%bs;
29048e59246SSatish Balay #endif
29157b952d6SSatish Balay             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
29257b952d6SSatish Balay               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
29357b952d6SSatish Balay               col =  in[j];
2949bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2959bf004c3SSatish Balay               B = baij->B;
2969bf004c3SSatish Balay               b = (Mat_SeqBAIJ *) (B)->data;
2979bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2989bf004c3SSatish Balay               ba=b->a;
29957b952d6SSatish Balay             }
300d64ed03dSBarry Smith           } else col = in[j];
30157b952d6SSatish Balay           if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
302ac7a638eSSatish Balay           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv);
303ac7a638eSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
30457b952d6SSatish Balay         }
30557b952d6SSatish Balay       }
306d64ed03dSBarry Smith     } else {
30790f02eecSBarry Smith       if ( !baij->donotstash) {
308ff2fd236SBarry Smith         if (roworiented) {
3098798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
310ff2fd236SBarry Smith         } else {
3118798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
31257b952d6SSatish Balay         }
31357b952d6SSatish Balay       }
31457b952d6SSatish Balay     }
31590f02eecSBarry Smith   }
3163a40ed3dSBarry Smith   PetscFunctionReturn(0);
31757b952d6SSatish Balay }
31857b952d6SSatish Balay 
319ab26458aSBarry Smith #undef __FUNC__
320ab26458aSBarry Smith #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ"
321ec1ea8d8SLois Curfman McInnes int MatSetValuesBlocked_MPIBAIJ(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
322ab26458aSBarry Smith {
323ab26458aSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
32430793edcSSatish Balay   Scalar      *value,*barray=baij->barray;
3257ef1d9bdSSatish Balay   int         ierr,i,j,ii,jj,row,col;
326ab26458aSBarry Smith   int         roworiented = baij->roworiented,rstart=baij->rstart ;
327ab26458aSBarry Smith   int         rend=baij->rend,cstart=baij->cstart,stepval;
328ab26458aSBarry Smith   int         cend=baij->cend,bs=baij->bs,bs2=baij->bs2;
329ab26458aSBarry Smith 
330b16ae2b1SBarry Smith   PetscFunctionBegin;
33130793edcSSatish Balay   if(!barray) {
33247513183SBarry Smith     baij->barray = barray = (Scalar*) PetscMalloc(bs2*sizeof(Scalar));CHKPTRQ(barray);
33330793edcSSatish Balay   }
33430793edcSSatish Balay 
335ab26458aSBarry Smith   if (roworiented) {
336ab26458aSBarry Smith     stepval = (n-1)*bs;
337ab26458aSBarry Smith   } else {
338ab26458aSBarry Smith     stepval = (m-1)*bs;
339ab26458aSBarry Smith   }
340ab26458aSBarry Smith   for ( i=0; i<m; i++ ) {
3415ef9f2a5SBarry Smith     if (im[i] < 0) continue;
342aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
3435ef9f2a5SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large, row %d max %d",im[i],baij->Mbs);
344ab26458aSBarry Smith #endif
345ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
346ab26458aSBarry Smith       row = im[i] - rstart;
347ab26458aSBarry Smith       for ( j=0; j<n; j++ ) {
34815b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
34915b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
35015b57d14SSatish Balay           barray = v + i*bs2;
35115b57d14SSatish Balay         } else if((!roworiented) && (m == 1)) {
35215b57d14SSatish Balay           barray = v + j*bs2;
35315b57d14SSatish Balay         } else { /* Here a copy is required */
354ab26458aSBarry Smith           if (roworiented) {
355ab26458aSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
356ab26458aSBarry Smith           } else {
357ab26458aSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
358abef11f7SSatish Balay           }
35947513183SBarry Smith           for ( ii=0; ii<bs; ii++,value+=stepval ) {
36047513183SBarry Smith             for (jj=0; jj<bs; jj++ ) {
36130793edcSSatish Balay               *barray++  = *value++;
36247513183SBarry Smith             }
36347513183SBarry Smith           }
36430793edcSSatish Balay           barray -=bs2;
36515b57d14SSatish Balay         }
366abef11f7SSatish Balay 
367abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend){
368abef11f7SSatish Balay           col  = in[j] - cstart;
36930793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->A,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
370ab26458aSBarry Smith         }
3715ef9f2a5SBarry Smith         else if (in[j] < 0) continue;
372aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
3735ef9f2a5SBarry Smith         else if (in[j] >= baij->Nbs) {SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large, col %d max %d",in[j],baij->Nbs);}
374ab26458aSBarry Smith #endif
375ab26458aSBarry Smith         else {
376ab26458aSBarry Smith           if (mat->was_assembled) {
377ab26458aSBarry Smith             if (!baij->colmap) {
378ab26458aSBarry Smith               ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
379ab26458aSBarry Smith             }
380a5eb4965SSatish Balay 
381aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
382aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
383fa46199cSSatish Balay             { int data;
384fa46199cSSatish Balay             ierr = TableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
385fa46199cSSatish Balay             if((data - 1) % bs)
38648e59246SSatish Balay 	      {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");}
387fa46199cSSatish Balay             }
38848e59246SSatish Balay #else
389a8c6a408SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) {SETERRQ(PETSC_ERR_PLIB,0,"Incorrect colmap");}
390a5eb4965SSatish Balay #endif
39148e59246SSatish Balay #endif
392aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
393fa46199cSSatish Balay 	    ierr = TableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
394fa46199cSSatish Balay             col  = (col - 1)/bs;
39548e59246SSatish Balay #else
396a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
39748e59246SSatish Balay #endif
398ab26458aSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
399ab26458aSBarry Smith               ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
400ab26458aSBarry Smith               col =  in[j];
401ab26458aSBarry Smith             }
402ab26458aSBarry Smith           }
403ab26458aSBarry Smith           else col = in[j];
40430793edcSSatish Balay           ierr = MatSetValuesBlocked_SeqBAIJ(baij->B,1,&row,1,&col,barray,addv);CHKERRQ(ierr);
405ab26458aSBarry Smith         }
406ab26458aSBarry Smith       }
407d64ed03dSBarry Smith     } else {
408ab26458aSBarry Smith       if (!baij->donotstash) {
409ff2fd236SBarry Smith         if (roworiented) {
4108798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
411ff2fd236SBarry Smith         } else {
4128798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
413ff2fd236SBarry Smith         }
414abef11f7SSatish Balay       }
415ab26458aSBarry Smith     }
416ab26458aSBarry Smith   }
4173a40ed3dSBarry Smith   PetscFunctionReturn(0);
418ab26458aSBarry Smith }
4190bdbc534SSatish Balay #define HASH_KEY 0.6180339887
420c2760754SSatish Balay /* #define HASH1(size,key) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
421c2760754SSatish Balay #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(int)((size)*(tmp-(int)tmp)))
422c2760754SSatish Balay /* #define HASH(size,key,tmp) ((int)((size)*fmod(((key)*HASH_KEY),1))) */
4235615d1e5SSatish Balay #undef __FUNC__
4240bdbc534SSatish Balay #define __FUNC__ "MatSetValues_MPIBAIJ_HT"
4250bdbc534SSatish Balay int MatSetValues_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
4260bdbc534SSatish Balay {
4270bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
4280bdbc534SSatish Balay   int         ierr,i,j,row,col;
4290bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart_orig=baij->rstart_bs ;
430c2760754SSatish Balay   int         rend_orig=baij->rend_bs,Nbs=baij->Nbs;
431c2760754SSatish Balay   int         h1,key,size=baij->ht_size,bs=baij->bs,*HT=baij->ht,idx;
432c2760754SSatish Balay   double      tmp;
433b9e4cc15SSatish Balay   Scalar      ** HD = baij->hd,value;
434aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
4354a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4364a15367fSSatish Balay #endif
4370bdbc534SSatish Balay 
4380bdbc534SSatish Balay   PetscFunctionBegin;
4390bdbc534SSatish Balay 
4400bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
441aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
4420bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
4430bdbc534SSatish Balay     if (im[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
4440bdbc534SSatish Balay #endif
4450bdbc534SSatish Balay       row = im[i];
446c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4470bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
4480bdbc534SSatish Balay         col = in[j];
4490bdbc534SSatish Balay         if (roworiented) value = v[i*n+j]; else value = v[i+j*m];
4500bdbc534SSatish Balay         /* Look up into the Hash Table */
451c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
452c2760754SSatish Balay         h1  = HASH(size,key,tmp);
4530bdbc534SSatish Balay 
454c2760754SSatish Balay 
455c2760754SSatish Balay         idx = h1;
456aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
457187ce0cbSSatish Balay         insert_ct++;
458187ce0cbSSatish Balay         total_ct++;
459187ce0cbSSatish Balay         if (HT[idx] != key) {
460187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
461187ce0cbSSatish Balay           if (idx == size) {
462187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
463187ce0cbSSatish Balay             if (idx == h1) {
464187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
465187ce0cbSSatish Balay             }
466187ce0cbSSatish Balay           }
467187ce0cbSSatish Balay         }
468187ce0cbSSatish Balay #else
469c2760754SSatish Balay         if (HT[idx] != key) {
470c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
471c2760754SSatish Balay           if (idx == size) {
472c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
473c2760754SSatish Balay             if (idx == h1) {
474c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
475c2760754SSatish Balay             }
476c2760754SSatish Balay           }
477c2760754SSatish Balay         }
478187ce0cbSSatish Balay #endif
479c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
480c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
481c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
4820bdbc534SSatish Balay       }
4830bdbc534SSatish Balay     } else {
4840bdbc534SSatish Balay       if (!baij->donotstash) {
485ff2fd236SBarry Smith         if (roworiented) {
4868798bf22SSatish Balay           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n);CHKERRQ(ierr);
487ff2fd236SBarry Smith         } else {
4888798bf22SSatish Balay           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m);CHKERRQ(ierr);
4890bdbc534SSatish Balay         }
4900bdbc534SSatish Balay       }
4910bdbc534SSatish Balay     }
4920bdbc534SSatish Balay   }
493aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
494187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
495187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
496187ce0cbSSatish Balay #endif
4970bdbc534SSatish Balay   PetscFunctionReturn(0);
4980bdbc534SSatish Balay }
4990bdbc534SSatish Balay 
5000bdbc534SSatish Balay #undef __FUNC__
5010bdbc534SSatish Balay #define __FUNC__ "MatSetValuesBlocked_MPIBAIJ_HT"
5020bdbc534SSatish Balay int MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,int m,int *im,int n,int *in,Scalar *v,InsertMode addv)
5030bdbc534SSatish Balay {
5040bdbc534SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
5058798bf22SSatish Balay   int         ierr,i,j,ii,jj,row,col;
5060bdbc534SSatish Balay   int         roworiented = baij->roworiented,rstart=baij->rstart ;
507b4cc0f5aSSatish Balay   int         rend=baij->rend,stepval,bs=baij->bs,bs2=baij->bs2;
508c2760754SSatish Balay   int         h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
509c2760754SSatish Balay   double      tmp;
510187ce0cbSSatish Balay   Scalar      ** HD = baij->hd,*value,*v_t,*baij_a;
511aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
5124a15367fSSatish Balay   int         total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5134a15367fSSatish Balay #endif
5140bdbc534SSatish Balay 
515d0a41580SSatish Balay   PetscFunctionBegin;
516d0a41580SSatish Balay 
5170bdbc534SSatish Balay   if (roworiented) {
5180bdbc534SSatish Balay     stepval = (n-1)*bs;
5190bdbc534SSatish Balay   } else {
5200bdbc534SSatish Balay     stepval = (m-1)*bs;
5210bdbc534SSatish Balay   }
5220bdbc534SSatish Balay   for ( i=0; i<m; i++ ) {
523aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
5240bdbc534SSatish Balay     if (im[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
5250bdbc534SSatish Balay     if (im[i] >= baij->Mbs) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
5260bdbc534SSatish Balay #endif
5270bdbc534SSatish Balay     row   = im[i];
528187ce0cbSSatish Balay     v_t   = v + i*bs2;
529c2760754SSatish Balay     if (row >= rstart && row < rend) {
5300bdbc534SSatish Balay       for ( j=0; j<n; j++ ) {
5310bdbc534SSatish Balay         col = in[j];
5320bdbc534SSatish Balay 
5330bdbc534SSatish Balay         /* Look up into the Hash Table */
534c2760754SSatish Balay         key = row*Nbs+col+1;
535c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5360bdbc534SSatish Balay 
537c2760754SSatish Balay         idx = h1;
538aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
539187ce0cbSSatish Balay         total_ct++;
540187ce0cbSSatish Balay         insert_ct++;
541187ce0cbSSatish Balay        if (HT[idx] != key) {
542187ce0cbSSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++);
543187ce0cbSSatish Balay           if (idx == size) {
544187ce0cbSSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++);
545187ce0cbSSatish Balay             if (idx == h1) {
546187ce0cbSSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
547187ce0cbSSatish Balay             }
548187ce0cbSSatish Balay           }
549187ce0cbSSatish Balay         }
550187ce0cbSSatish Balay #else
551c2760754SSatish Balay         if (HT[idx] != key) {
552c2760754SSatish Balay           for ( idx=h1; (idx<size) && (HT[idx]!=key); idx++);
553c2760754SSatish Balay           if (idx == size) {
554c2760754SSatish Balay             for ( idx=0; (idx<h1) && (HT[idx]!=key); idx++);
555c2760754SSatish Balay             if (idx == h1) {
556c2760754SSatish Balay               SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"(row,col) has no entry in the hash table");
557c2760754SSatish Balay             }
558c2760754SSatish Balay           }
559c2760754SSatish Balay         }
560187ce0cbSSatish Balay #endif
561c2760754SSatish Balay         baij_a = HD[idx];
5620bdbc534SSatish Balay         if (roworiented) {
563c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
564187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
565187ce0cbSSatish Balay           value = v_t;
566187ce0cbSSatish Balay           v_t  += bs;
567fef45726SSatish Balay           if (addv == ADD_VALUES) {
568c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
569c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
570fef45726SSatish Balay                 baij_a[jj]  += *value++;
571b4cc0f5aSSatish Balay               }
572b4cc0f5aSSatish Balay             }
573fef45726SSatish Balay           } else {
574c2760754SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval) {
575c2760754SSatish Balay               for ( jj=ii; jj<bs2; jj+=bs ) {
576fef45726SSatish Balay                 baij_a[jj]  = *value++;
577fef45726SSatish Balay               }
578fef45726SSatish Balay             }
579fef45726SSatish Balay           }
5800bdbc534SSatish Balay         } else {
5810bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
582fef45726SSatish Balay           if (addv == ADD_VALUES) {
583b4cc0f5aSSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
5840bdbc534SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
585fef45726SSatish Balay                 baij_a[jj]  += *value++;
586fef45726SSatish Balay               }
587fef45726SSatish Balay             }
588fef45726SSatish Balay           } else {
589fef45726SSatish Balay             for ( ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs ) {
590fef45726SSatish Balay               for ( jj=0; jj<bs; jj++ ) {
591fef45726SSatish Balay                 baij_a[jj]  = *value++;
592fef45726SSatish Balay               }
593b4cc0f5aSSatish Balay             }
5940bdbc534SSatish Balay           }
5950bdbc534SSatish Balay         }
5960bdbc534SSatish Balay       }
5970bdbc534SSatish Balay     } else {
5980bdbc534SSatish Balay       if (!baij->donotstash) {
5990bdbc534SSatish Balay         if (roworiented) {
6008798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6010bdbc534SSatish Balay         } else {
6028798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6030bdbc534SSatish Balay         }
6040bdbc534SSatish Balay       }
6050bdbc534SSatish Balay     }
6060bdbc534SSatish Balay   }
607aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
608187ce0cbSSatish Balay   baij->ht_total_ct = total_ct;
609187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
610187ce0cbSSatish Balay #endif
6110bdbc534SSatish Balay   PetscFunctionReturn(0);
6120bdbc534SSatish Balay }
613133cdb44SSatish Balay 
6140bdbc534SSatish Balay #undef __FUNC__
6155615d1e5SSatish Balay #define __FUNC__ "MatGetValues_MPIBAIJ"
616ec1ea8d8SLois Curfman McInnes int MatGetValues_MPIBAIJ(Mat mat,int m,int *idxm,int n,int *idxn,Scalar *v)
617d6de1c52SSatish Balay {
618d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
619d6de1c52SSatish Balay   int        bs=baij->bs,ierr,i,j, bsrstart = baij->rstart*bs, bsrend = baij->rend*bs;
62048e59246SSatish Balay   int        bscstart = baij->cstart*bs, bscend = baij->cend*bs,row,col,data;
621d6de1c52SSatish Balay 
622133cdb44SSatish Balay   PetscFunctionBegin;
623d6de1c52SSatish Balay   for ( i=0; i<m; i++ ) {
624a8c6a408SBarry Smith     if (idxm[i] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative row");
625a8c6a408SBarry Smith     if (idxm[i] >= baij->M) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Row too large");
626d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
627d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
628d6de1c52SSatish Balay       for ( j=0; j<n; j++ ) {
629a8c6a408SBarry Smith         if (idxn[j] < 0) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Negative column");
630a8c6a408SBarry Smith         if (idxn[j] >= baij->N) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Column too large");
631d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend){
632d6de1c52SSatish Balay           col = idxn[j] - bscstart;
63398dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
634d64ed03dSBarry Smith         } else {
635905e6a2fSBarry Smith           if (!baij->colmap) {
636905e6a2fSBarry Smith             ierr = CreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
637905e6a2fSBarry Smith           }
638aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
639fa46199cSSatish Balay           ierr = TableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
640fa46199cSSatish Balay           data --;
64148e59246SSatish Balay #else
64248e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
64348e59246SSatish Balay #endif
64448e59246SSatish Balay           if((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
645d9d09a02SSatish Balay           else {
64648e59246SSatish Balay             col  = data + idxn[j]%bs;
64798dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
648d6de1c52SSatish Balay           }
649d6de1c52SSatish Balay         }
650d6de1c52SSatish Balay       }
651d64ed03dSBarry Smith     } else {
652a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"Only local values currently supported");
653d6de1c52SSatish Balay     }
654d6de1c52SSatish Balay   }
6553a40ed3dSBarry Smith  PetscFunctionReturn(0);
656d6de1c52SSatish Balay }
657d6de1c52SSatish Balay 
6585615d1e5SSatish Balay #undef __FUNC__
6595615d1e5SSatish Balay #define __FUNC__ "MatNorm_MPIBAIJ"
660ec1ea8d8SLois Curfman McInnes int MatNorm_MPIBAIJ(Mat mat,NormType type,double *norm)
661d6de1c52SSatish Balay {
662d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
663d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*) baij->A->data, *bmat = (Mat_SeqBAIJ*) baij->B->data;
664acdf5bf4SSatish Balay   int        ierr, i,bs2=baij->bs2;
665d6de1c52SSatish Balay   double     sum = 0.0;
666d6de1c52SSatish Balay   Scalar     *v;
667d6de1c52SSatish Balay 
668d64ed03dSBarry Smith   PetscFunctionBegin;
669d6de1c52SSatish Balay   if (baij->size == 1) {
670d6de1c52SSatish Balay     ierr =  MatNorm(baij->A,type,norm);CHKERRQ(ierr);
671d6de1c52SSatish Balay   } else {
672d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
673d6de1c52SSatish Balay       v = amat->a;
674d6de1c52SSatish Balay       for (i=0; i<amat->nz*bs2; i++ ) {
675aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
676e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
677d6de1c52SSatish Balay #else
678d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
679d6de1c52SSatish Balay #endif
680d6de1c52SSatish Balay       }
681d6de1c52SSatish Balay       v = bmat->a;
682d6de1c52SSatish Balay       for (i=0; i<bmat->nz*bs2; i++ ) {
683aa482453SBarry Smith #if defined(PETSC_USE_COMPLEX)
684e20fef11SSatish Balay         sum += PetscReal(PetscConj(*v)*(*v)); v++;
685d6de1c52SSatish Balay #else
686d6de1c52SSatish Balay         sum += (*v)*(*v); v++;
687d6de1c52SSatish Balay #endif
688d6de1c52SSatish Balay       }
689ca161407SBarry Smith       ierr = MPI_Allreduce(&sum,norm,1,MPI_DOUBLE,MPI_SUM,mat->comm);CHKERRQ(ierr);
690d6de1c52SSatish Balay       *norm = sqrt(*norm);
691d64ed03dSBarry Smith     } else {
692e3372554SBarry Smith       SETERRQ(PETSC_ERR_SUP,0,"No support for this norm yet");
693d6de1c52SSatish Balay     }
694d64ed03dSBarry Smith   }
6953a40ed3dSBarry Smith   PetscFunctionReturn(0);
696d6de1c52SSatish Balay }
69757b952d6SSatish Balay 
698bd7f49f5SSatish Balay 
699fef45726SSatish Balay /*
700fef45726SSatish Balay   Creates the hash table, and sets the table
701fef45726SSatish Balay   This table is created only once.
702fef45726SSatish Balay   If new entried need to be added to the matrix
703fef45726SSatish Balay   then the hash table has to be destroyed and
704fef45726SSatish Balay   recreated.
705fef45726SSatish Balay */
706fef45726SSatish Balay #undef __FUNC__
707fef45726SSatish Balay #define __FUNC__ "MatCreateHashTable_MPIBAIJ_Private"
708d0a41580SSatish Balay int MatCreateHashTable_MPIBAIJ_Private(Mat mat,double factor)
709596b8d2eSBarry Smith {
710596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
711596b8d2eSBarry Smith   Mat         A = baij->A, B=baij->B;
712596b8d2eSBarry Smith   Mat_SeqBAIJ *a=(Mat_SeqBAIJ *)A->data, *b=(Mat_SeqBAIJ *)B->data;
7130bdbc534SSatish Balay   int         i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
714549d3d68SSatish Balay   int         size,bs2=baij->bs2,rstart=baij->rstart,ierr;
715187ce0cbSSatish Balay   int         cstart=baij->cstart,*garray=baij->garray,row,col,Nbs=baij->Nbs;
716fef45726SSatish Balay   int         *HT,key;
7170bdbc534SSatish Balay   Scalar      **HD;
718c2760754SSatish Balay   double      tmp;
719aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
7204a15367fSSatish Balay   int         ct=0,max=0;
7214a15367fSSatish Balay #endif
722fef45726SSatish Balay 
723d64ed03dSBarry Smith   PetscFunctionBegin;
7240bdbc534SSatish Balay   baij->ht_size=(int)(factor*nz);
7250bdbc534SSatish Balay   size = baij->ht_size;
726fef45726SSatish Balay 
7270bdbc534SSatish Balay   if (baij->ht) {
7280bdbc534SSatish Balay     PetscFunctionReturn(0);
729596b8d2eSBarry Smith   }
7300bdbc534SSatish Balay 
731fef45726SSatish Balay   /* Allocate Memory for Hash Table */
732b9e4cc15SSatish Balay   baij->hd = (Scalar**)PetscMalloc((size)*(sizeof(int)+sizeof(Scalar*))+1);CHKPTRQ(baij->hd);
733b9e4cc15SSatish Balay   baij->ht = (int*)(baij->hd + size);
734b9e4cc15SSatish Balay   HD = baij->hd;
735a07cd24cSSatish Balay   HT = baij->ht;
736b9e4cc15SSatish Balay 
737b9e4cc15SSatish Balay 
738549d3d68SSatish Balay   ierr = PetscMemzero(HD,size*(sizeof(int)+sizeof(Scalar*)));CHKERRQ(ierr);
7390bdbc534SSatish Balay 
740596b8d2eSBarry Smith 
741596b8d2eSBarry Smith   /* Loop Over A */
7420bdbc534SSatish Balay   for ( i=0; i<a->mbs; i++ ) {
743596b8d2eSBarry Smith     for ( j=ai[i]; j<ai[i+1]; j++ ) {
7440bdbc534SSatish Balay       row = i+rstart;
7450bdbc534SSatish Balay       col = aj[j]+cstart;
746596b8d2eSBarry Smith 
747187ce0cbSSatish Balay       key = row*Nbs + col + 1;
748c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7490bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
7500bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
7510bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7520bdbc534SSatish Balay           HD[(h1+k)%size] = a->a + j*bs2;
753596b8d2eSBarry Smith           break;
754aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
755187ce0cbSSatish Balay         } else {
756187ce0cbSSatish Balay           ct++;
757187ce0cbSSatish Balay #endif
758596b8d2eSBarry Smith         }
759187ce0cbSSatish Balay       }
760aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
761187ce0cbSSatish Balay       if (k> max) max = k;
762187ce0cbSSatish Balay #endif
763596b8d2eSBarry Smith     }
764596b8d2eSBarry Smith   }
765596b8d2eSBarry Smith   /* Loop Over B */
7660bdbc534SSatish Balay   for ( i=0; i<b->mbs; i++ ) {
767596b8d2eSBarry Smith     for ( j=bi[i]; j<bi[i+1]; j++ ) {
7680bdbc534SSatish Balay       row = i+rstart;
7690bdbc534SSatish Balay       col = garray[bj[j]];
770187ce0cbSSatish Balay       key = row*Nbs + col + 1;
771c2760754SSatish Balay       h1  = HASH(size,key,tmp);
7720bdbc534SSatish Balay       for ( k=0; k<size; k++ ){
7730bdbc534SSatish Balay         if (HT[(h1+k)%size] == 0.0) {
7740bdbc534SSatish Balay           HT[(h1+k)%size] = key;
7750bdbc534SSatish Balay           HD[(h1+k)%size] = b->a + j*bs2;
776596b8d2eSBarry Smith           break;
777aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
778187ce0cbSSatish Balay         } else {
779187ce0cbSSatish Balay           ct++;
780187ce0cbSSatish Balay #endif
781596b8d2eSBarry Smith         }
782187ce0cbSSatish Balay       }
783aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
784187ce0cbSSatish Balay       if (k> max) max = k;
785187ce0cbSSatish Balay #endif
786596b8d2eSBarry Smith     }
787596b8d2eSBarry Smith   }
788596b8d2eSBarry Smith 
789596b8d2eSBarry Smith   /* Print Summary */
790aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
791c2760754SSatish Balay   for ( i=0,j=0; i<size; i++)
792596b8d2eSBarry Smith     if (HT[i]) {j++;}
793187ce0cbSSatish Balay   PLogInfo(0,"MatCreateHashTable_MPIBAIJ_Private: Average Search = %5.2f,max search = %d\n",
794187ce0cbSSatish Balay            (j== 0)? 0.0:((double)(ct+j))/j,max);
795187ce0cbSSatish Balay #endif
7963a40ed3dSBarry Smith   PetscFunctionReturn(0);
797596b8d2eSBarry Smith }
79857b952d6SSatish Balay 
799bbb85fb3SSatish Balay #undef __FUNC__
800bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyBegin_MPIBAIJ"
801bbb85fb3SSatish Balay int MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
802bbb85fb3SSatish Balay {
803bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
804ff2fd236SBarry Smith   int         ierr,nstash,reallocs;
805bbb85fb3SSatish Balay   InsertMode  addv;
806bbb85fb3SSatish Balay 
807bbb85fb3SSatish Balay   PetscFunctionBegin;
808bbb85fb3SSatish Balay   if (baij->donotstash) {
809bbb85fb3SSatish Balay     PetscFunctionReturn(0);
810bbb85fb3SSatish Balay   }
811bbb85fb3SSatish Balay 
812bbb85fb3SSatish Balay   /* make sure all processors are either in INSERTMODE or ADDMODE */
813bbb85fb3SSatish Balay   ierr = MPI_Allreduce(&mat->insertmode,&addv,1,MPI_INT,MPI_BOR,mat->comm);CHKERRQ(ierr);
814bbb85fb3SSatish Balay   if (addv == (ADD_VALUES|INSERT_VALUES)) {
815bbb85fb3SSatish Balay     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Some processors inserted others added");
816bbb85fb3SSatish Balay   }
817bbb85fb3SSatish Balay   mat->insertmode = addv; /* in case this processor had no cache */
818bbb85fb3SSatish Balay 
8198798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->stash,baij->rowners_bs);CHKERRQ(ierr);
8208798bf22SSatish Balay   ierr = MatStashScatterBegin_Private(&mat->bstash,baij->rowners);CHKERRQ(ierr);
8218798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8225a655dc6SBarry Smith   PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
8238798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
8245a655dc6SBarry Smith   PLogInfo(0,"MatAssemblyBegin_MPIBAIJ:Block-Stash has %d entries, uses %d mallocs.\n",nstash,reallocs);
825bbb85fb3SSatish Balay   PetscFunctionReturn(0);
826bbb85fb3SSatish Balay }
827bbb85fb3SSatish Balay 
828bbb85fb3SSatish Balay #undef __FUNC__
829bbb85fb3SSatish Balay #define __FUNC__ "MatAssemblyEnd_MPIBAIJ"
830bbb85fb3SSatish Balay int MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
831bbb85fb3SSatish Balay {
832bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij=(Mat_MPIBAIJ *) mat->data;
833a2d1c673SSatish Balay   Mat_SeqBAIJ *a=(Mat_SeqBAIJ*)baij->A->data,*b=(Mat_SeqBAIJ*)baij->B->data;
834a2d1c673SSatish Balay   int         i,j,rstart,ncols,n,ierr,flg,bs2=baij->bs2;
835a2d1c673SSatish Balay   int         *row,*col,other_disassembled,r1,r2,r3;
836bbb85fb3SSatish Balay   Scalar      *val;
837bbb85fb3SSatish Balay   InsertMode  addv = mat->insertmode;
838bbb85fb3SSatish Balay 
839bbb85fb3SSatish Balay   PetscFunctionBegin;
840bbb85fb3SSatish Balay   if (!baij->donotstash) {
841a2d1c673SSatish Balay     while (1) {
8428798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
843a2d1c673SSatish Balay       if (!flg) break;
844a2d1c673SSatish Balay 
845bbb85fb3SSatish Balay       for ( i=0; i<n; ) {
846bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
847bbb85fb3SSatish Balay         for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; }
848bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
849bbb85fb3SSatish Balay         else       ncols = n-i;
850bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
851bbb85fb3SSatish Balay         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,addv);CHKERRQ(ierr);
852bbb85fb3SSatish Balay         i = j;
853bbb85fb3SSatish Balay       }
854bbb85fb3SSatish Balay     }
8558798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
856a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
857a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
858a2d1c673SSatish Balay        restore the original flags */
859a2d1c673SSatish Balay     r1 = baij->roworiented;
860a2d1c673SSatish Balay     r2 = a->roworiented;
861a2d1c673SSatish Balay     r3 = b->roworiented;
862a2d1c673SSatish Balay     baij->roworiented = 0;
863a2d1c673SSatish Balay     a->roworiented    = 0;
864a2d1c673SSatish Balay     b->roworiented    = 0;
865a2d1c673SSatish Balay     while (1) {
8668798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
867a2d1c673SSatish Balay       if (!flg) break;
868a2d1c673SSatish Balay 
869a2d1c673SSatish Balay       for ( i=0; i<n; ) {
870a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
871a2d1c673SSatish Balay         for ( j=i,rstart=row[j]; j<n; j++ ) { if (row[j] != rstart) break; }
872a2d1c673SSatish Balay         if (j < n) ncols = j-i;
873a2d1c673SSatish Balay         else       ncols = n-i;
874a2d1c673SSatish Balay         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,addv);CHKERRQ(ierr);
875a2d1c673SSatish Balay         i = j;
876a2d1c673SSatish Balay       }
877a2d1c673SSatish Balay     }
8788798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
879a2d1c673SSatish Balay     baij->roworiented = r1;
880a2d1c673SSatish Balay     a->roworiented    = r2;
881a2d1c673SSatish Balay     b->roworiented    = r3;
882bbb85fb3SSatish Balay   }
883bbb85fb3SSatish Balay 
884bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
885bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
886bbb85fb3SSatish Balay 
887bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
888bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
889bbb85fb3SSatish Balay   /*
890bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
891bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
892bbb85fb3SSatish Balay   */
893bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*) baij->B->data)->nonew)  {
894bbb85fb3SSatish Balay     ierr = MPI_Allreduce(&mat->was_assembled,&other_disassembled,1,MPI_INT,MPI_PROD,mat->comm);CHKERRQ(ierr);
895bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
896bbb85fb3SSatish Balay       ierr = DisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
897bbb85fb3SSatish Balay     }
898bbb85fb3SSatish Balay   }
899bbb85fb3SSatish Balay 
900bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
901bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
902bbb85fb3SSatish Balay   }
903bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
904bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
905bbb85fb3SSatish Balay 
906aa482453SBarry Smith #if defined(PETSC_USE_BOPT_g)
907bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
908bbb85fb3SSatish Balay     PLogInfo(0,"MatAssemblyEnd_MPIBAIJ:Average Hash Table Search in MatSetValues = %5.2f\n",
909bbb85fb3SSatish Balay              ((double)baij->ht_total_ct)/baij->ht_insert_ct);
910bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
911bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
912bbb85fb3SSatish Balay   }
913bbb85fb3SSatish Balay #endif
914bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
915bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
916bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
917bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
918bbb85fb3SSatish Balay   }
919bbb85fb3SSatish Balay 
920606d414cSSatish Balay   if (baij->rowvalues) {
921606d414cSSatish Balay     ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);
922606d414cSSatish Balay     baij->rowvalues = 0;
923606d414cSSatish Balay   }
924bbb85fb3SSatish Balay   PetscFunctionReturn(0);
925bbb85fb3SSatish Balay }
92657b952d6SSatish Balay 
927225e174dSSatish Balay /*
9285615d1e5SSatish Balay #undef __FUNC__
9295615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ_Binary"
93057b952d6SSatish Balay static int MatView_MPIBAIJ_Binary(Mat mat,Viewer viewer)
93157b952d6SSatish Balay {
93257b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
93357b952d6SSatish Balay   int          ierr;
93457b952d6SSatish Balay 
935d64ed03dSBarry Smith   PetscFunctionBegin;
93657b952d6SSatish Balay   if (baij->size == 1) {
93757b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
938a8c6a408SBarry Smith   } else SETERRQ(PETSC_ERR_SUP,0,"Only uniprocessor output supported");
9393a40ed3dSBarry Smith   PetscFunctionReturn(0);
94057b952d6SSatish Balay }
941225e174dSSatish Balay */
94257b952d6SSatish Balay 
9435615d1e5SSatish Balay #undef __FUNC__
9447b2a1423SBarry Smith #define __FUNC__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
9457b2a1423SBarry Smith static int MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,Viewer viewer)
94657b952d6SSatish Balay {
94757b952d6SSatish Balay   Mat_MPIBAIJ  *baij = (Mat_MPIBAIJ *) mat->data;
94877ed5343SBarry Smith   int          ierr, format,bs = baij->bs, size = baij->size, rank = baij->rank;
94957b952d6SSatish Balay   FILE         *fd;
95057b952d6SSatish Balay 
951d64ed03dSBarry Smith   PetscFunctionBegin;
952*454a90a3SBarry Smith   if (PetscTypeCompare(viewer,ASCII_VIEWER)) {
953d41123aaSBarry Smith     ierr = ViewerGetFormat(viewer,&format);CHKERRQ(ierr);
954639f9d9dSBarry Smith     if (format == VIEWER_FORMAT_ASCII_INFO_LONG) {
9554e220ebcSLois Curfman McInnes       MatInfo info;
956d132466eSBarry Smith       ierr = MPI_Comm_rank(mat->comm,&rank);CHKERRQ(ierr);
95757b952d6SSatish Balay       ierr = ViewerASCIIGetPointer(viewer,&fd);CHKERRQ(ierr);
958d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
959d132466eSBarry Smith       ierr = PetscSequentialPhaseBegin(mat->comm,1);CHKERRQ(ierr);
96057b952d6SSatish Balay       fprintf(fd,"[%d] Local rows %d nz %d nz alloced %d bs %d mem %d\n",
9614e220ebcSLois Curfman McInnes               rank,baij->m,(int)info.nz_used*bs,(int)info.nz_allocated*bs,
9624e220ebcSLois Curfman McInnes               baij->bs,(int)info.memory);
963d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
9644e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] on-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
965d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
9664e220ebcSLois Curfman McInnes       fprintf(fd,"[%d] off-diagonal part: nz %d \n",rank,(int)info.nz_used*bs);
96757b952d6SSatish Balay       fflush(fd);
968d132466eSBarry Smith       ierr = PetscSequentialPhaseEnd(mat->comm,1);CHKERRQ(ierr);
96957b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
9703a40ed3dSBarry Smith       PetscFunctionReturn(0);
971d64ed03dSBarry Smith     } else if (format == VIEWER_FORMAT_ASCII_INFO) {
972d132466eSBarry Smith       ierr = PetscPrintf(mat->comm,"  block size is %d\n",bs);CHKERRQ(ierr);
9733a40ed3dSBarry Smith       PetscFunctionReturn(0);
97457b952d6SSatish Balay     }
97557b952d6SSatish Balay   }
97657b952d6SSatish Balay 
977*454a90a3SBarry Smith   if (PetscTypeCompare(viewer,DRAW_VIEWER)) {
97857b952d6SSatish Balay     Draw       draw;
97957b952d6SSatish Balay     PetscTruth isnull;
98077ed5343SBarry Smith     ierr = ViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
9813a40ed3dSBarry Smith     ierr = DrawIsNull(draw,&isnull);CHKERRQ(ierr); if (isnull) PetscFunctionReturn(0);
98257b952d6SSatish Balay   }
98357b952d6SSatish Balay 
98457b952d6SSatish Balay   if (size == 1) {
98557b952d6SSatish Balay     ierr = MatView(baij->A,viewer);CHKERRQ(ierr);
986d64ed03dSBarry Smith   } else {
98757b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
98857b952d6SSatish Balay     Mat         A;
98957b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
99040011551SBarry Smith     int         M = baij->M, N = baij->N,*ai,*aj,col,i,j,k,*rvals;
99157b952d6SSatish Balay     int         mbs = baij->mbs;
99257b952d6SSatish Balay     Scalar      *a;
99357b952d6SSatish Balay 
99457b952d6SSatish Balay     if (!rank) {
99555843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,M,N,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
996d64ed03dSBarry Smith     } else {
99755843e3eSBarry Smith       ierr = MatCreateMPIBAIJ(mat->comm,baij->bs,0,0,M,N,0,PETSC_NULL,0,PETSC_NULL,&A);CHKERRQ(ierr);
99857b952d6SSatish Balay     }
99957b952d6SSatish Balay     PLogObjectParent(mat,A);
100057b952d6SSatish Balay 
100157b952d6SSatish Balay     /* copy over the A part */
100257b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*) baij->A->data;
100357b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
100457b952d6SSatish Balay     rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals);
100557b952d6SSatish Balay 
100657b952d6SSatish Balay     for ( i=0; i<mbs; i++ ) {
100757b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
100857b952d6SSatish Balay       for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
100957b952d6SSatish Balay       for ( j=ai[i]; j<ai[i+1]; j++ ) {
101057b952d6SSatish Balay         col = (baij->cstart+aj[j])*bs;
101157b952d6SSatish Balay         for (k=0; k<bs; k++ ) {
1012cee3aa6bSSatish Balay           ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1013cee3aa6bSSatish Balay           col++; a += bs;
101457b952d6SSatish Balay         }
101557b952d6SSatish Balay       }
101657b952d6SSatish Balay     }
101757b952d6SSatish Balay     /* copy over the B part */
101857b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*) baij->B->data;
101957b952d6SSatish Balay     ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
102057b952d6SSatish Balay     for ( i=0; i<mbs; i++ ) {
102157b952d6SSatish Balay       rvals[0] = bs*(baij->rstart + i);
102257b952d6SSatish Balay       for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
102357b952d6SSatish Balay       for ( j=ai[i]; j<ai[i+1]; j++ ) {
102457b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
102557b952d6SSatish Balay         for (k=0; k<bs; k++ ) {
1026cee3aa6bSSatish Balay           ierr = MatSetValues(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1027cee3aa6bSSatish Balay           col++; a += bs;
102857b952d6SSatish Balay         }
102957b952d6SSatish Balay       }
103057b952d6SSatish Balay     }
1031606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
10326d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
10336d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
103455843e3eSBarry Smith     /*
103555843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
103655843e3eSBarry Smith        synchronized across all processors that share the Draw object
103755843e3eSBarry Smith     */
1038*454a90a3SBarry Smith     if (!rank || PetscTypeCompare(viewer,DRAW_VIEWER)) {
103957b952d6SSatish Balay       ierr = MatView(((Mat_MPIBAIJ*)(A->data))->A,viewer);CHKERRQ(ierr);
104057b952d6SSatish Balay     }
104157b952d6SSatish Balay     ierr = MatDestroy(A);CHKERRQ(ierr);
104257b952d6SSatish Balay   }
10433a40ed3dSBarry Smith   PetscFunctionReturn(0);
104457b952d6SSatish Balay }
104557b952d6SSatish Balay 
104657b952d6SSatish Balay 
104757b952d6SSatish Balay 
10485615d1e5SSatish Balay #undef __FUNC__
10495615d1e5SSatish Balay #define __FUNC__ "MatView_MPIBAIJ"
1050e1311b90SBarry Smith int MatView_MPIBAIJ(Mat mat,Viewer viewer)
105157b952d6SSatish Balay {
105257b952d6SSatish Balay   int         ierr;
105357b952d6SSatish Balay 
1054d64ed03dSBarry Smith   PetscFunctionBegin;
1055*454a90a3SBarry Smith   if (PetscTypeCompare(viewer,ASCII_VIEWER) || PetscTypeCompare(viewer,DRAW_VIEWER) ||
1056*454a90a3SBarry Smith       PetscTypeCompare(viewer,SOCKET_VIEWER)|| PetscTypeCompare(viewer,BINARY_VIEWER)) {
10577b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1058a84b093aSSatish Balay     /*
1059*454a90a3SBarry Smith   } else if (PetscTypeCompare(viewer,BINARY_VIEWER)) {
10603a40ed3dSBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
1061a84b093aSSatish Balay     */
10625cd90555SBarry Smith   } else {
10635cd90555SBarry Smith     SETERRQ(1,1,"Viewer type not supported by PETSc object");
106457b952d6SSatish Balay   }
10653a40ed3dSBarry Smith   PetscFunctionReturn(0);
106657b952d6SSatish Balay }
106757b952d6SSatish Balay 
10685615d1e5SSatish Balay #undef __FUNC__
10695615d1e5SSatish Balay #define __FUNC__ "MatDestroy_MPIBAIJ"
1070e1311b90SBarry Smith int MatDestroy_MPIBAIJ(Mat mat)
107179bdfe76SSatish Balay {
107279bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
107379bdfe76SSatish Balay   int         ierr;
107479bdfe76SSatish Balay 
1075d64ed03dSBarry Smith   PetscFunctionBegin;
107698dd23e9SBarry Smith 
107798dd23e9SBarry Smith   if (mat->mapping) {
107898dd23e9SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->mapping);CHKERRQ(ierr);
107998dd23e9SBarry Smith   }
108098dd23e9SBarry Smith   if (mat->bmapping) {
108198dd23e9SBarry Smith     ierr = ISLocalToGlobalMappingDestroy(mat->bmapping);CHKERRQ(ierr);
108298dd23e9SBarry Smith   }
108361b13de0SBarry Smith   if (mat->rmap) {
108461b13de0SBarry Smith     ierr = MapDestroy(mat->rmap);CHKERRQ(ierr);
108561b13de0SBarry Smith   }
108661b13de0SBarry Smith   if (mat->cmap) {
108761b13de0SBarry Smith     ierr = MapDestroy(mat->cmap);CHKERRQ(ierr);
108861b13de0SBarry Smith   }
1089aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1090e1311b90SBarry Smith   PLogObjectState((PetscObject)mat,"Rows=%d, Cols=%d",baij->M,baij->N);
109179bdfe76SSatish Balay #endif
109279bdfe76SSatish Balay 
10938798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
10948798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
10958798bf22SSatish Balay 
1096606d414cSSatish Balay   ierr = PetscFree(baij->rowners);CHKERRQ(ierr);
109779bdfe76SSatish Balay   ierr = MatDestroy(baij->A);CHKERRQ(ierr);
109879bdfe76SSatish Balay   ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1099aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
1100606d414cSSatish Balay   if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);}
110148e59246SSatish Balay #else
1102606d414cSSatish Balay   if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
110348e59246SSatish Balay #endif
1104606d414cSSatish Balay   if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
1105606d414cSSatish Balay   if (baij->lvec)   {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1106606d414cSSatish Balay   if (baij->Mvctx)  {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1107606d414cSSatish Balay   if (baij->rowvalues) {ierr = PetscFree(baij->rowvalues);CHKERRQ(ierr);}
1108606d414cSSatish Balay   if (baij->barray) {ierr = PetscFree(baij->barray);CHKERRQ(ierr);}
1109606d414cSSatish Balay   if (baij->hd) {ierr = PetscFree(baij->hd);CHKERRQ(ierr);}
1110606d414cSSatish Balay   ierr = PetscFree(baij);CHKERRQ(ierr);
111179bdfe76SSatish Balay   PLogObjectDestroy(mat);
111279bdfe76SSatish Balay   PetscHeaderDestroy(mat);
11133a40ed3dSBarry Smith   PetscFunctionReturn(0);
111479bdfe76SSatish Balay }
111579bdfe76SSatish Balay 
11165615d1e5SSatish Balay #undef __FUNC__
11175615d1e5SSatish Balay #define __FUNC__ "MatMult_MPIBAIJ"
1118ec1ea8d8SLois Curfman McInnes int MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1119cee3aa6bSSatish Balay {
1120cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
112147b4a8eaSLois Curfman McInnes   int         ierr, nt;
1122cee3aa6bSSatish Balay 
1123d64ed03dSBarry Smith   PetscFunctionBegin;
1124e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
112547b4a8eaSLois Curfman McInnes   if (nt != a->n) {
1126a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible partition of A and xx");
112747b4a8eaSLois Curfman McInnes   }
1128e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
112947b4a8eaSLois Curfman McInnes   if (nt != a->m) {
1130a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"Incompatible parition of A and yy");
113147b4a8eaSLois Curfman McInnes   }
113243a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1133f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
113443a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1135f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
113643a90d84SBarry Smith   ierr = VecScatterPostRecvs(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
11373a40ed3dSBarry Smith   PetscFunctionReturn(0);
1138cee3aa6bSSatish Balay }
1139cee3aa6bSSatish Balay 
11405615d1e5SSatish Balay #undef __FUNC__
11415615d1e5SSatish Balay #define __FUNC__ "MatMultAdd_MPIBAIJ"
1142ec1ea8d8SLois Curfman McInnes int MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1143cee3aa6bSSatish Balay {
1144cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1145cee3aa6bSSatish Balay   int        ierr;
1146d64ed03dSBarry Smith 
1147d64ed03dSBarry Smith   PetscFunctionBegin;
114843a90d84SBarry Smith   ierr = VecScatterBegin(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1149f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
115043a90d84SBarry Smith   ierr = VecScatterEnd(xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD,a->Mvctx);CHKERRQ(ierr);
1151f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
11523a40ed3dSBarry Smith   PetscFunctionReturn(0);
1153cee3aa6bSSatish Balay }
1154cee3aa6bSSatish Balay 
11555615d1e5SSatish Balay #undef __FUNC__
11565615d1e5SSatish Balay #define __FUNC__ "MatMultTrans_MPIBAIJ"
1157ec1ea8d8SLois Curfman McInnes int MatMultTrans_MPIBAIJ(Mat A,Vec xx,Vec yy)
1158cee3aa6bSSatish Balay {
1159cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1160cee3aa6bSSatish Balay   int         ierr;
1161cee3aa6bSSatish Balay 
1162d64ed03dSBarry Smith   PetscFunctionBegin;
1163cee3aa6bSSatish Balay   /* do nondiagonal part */
1164f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr);
1165cee3aa6bSSatish Balay   /* send it on its way */
1166537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1167cee3aa6bSSatish Balay   /* do local part */
1168f830108cSBarry Smith   ierr = (*a->A->ops->multtrans)(a->A,xx,yy);CHKERRQ(ierr);
1169cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1170cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1171cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1172639f9d9dSBarry Smith   ierr = VecScatterEnd(a->lvec,yy,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
11733a40ed3dSBarry Smith   PetscFunctionReturn(0);
1174cee3aa6bSSatish Balay }
1175cee3aa6bSSatish Balay 
11765615d1e5SSatish Balay #undef __FUNC__
11775615d1e5SSatish Balay #define __FUNC__ "MatMultTransAdd_MPIBAIJ"
1178ec1ea8d8SLois Curfman McInnes int MatMultTransAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1179cee3aa6bSSatish Balay {
1180cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1181cee3aa6bSSatish Balay   int         ierr;
1182cee3aa6bSSatish Balay 
1183d64ed03dSBarry Smith   PetscFunctionBegin;
1184cee3aa6bSSatish Balay   /* do nondiagonal part */
1185f830108cSBarry Smith   ierr = (*a->B->ops->multtrans)(a->B,xx,a->lvec);CHKERRQ(ierr);
1186cee3aa6bSSatish Balay   /* send it on its way */
1187537820f0SBarry Smith   ierr = VecScatterBegin(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
1188cee3aa6bSSatish Balay   /* do local part */
1189f830108cSBarry Smith   ierr = (*a->A->ops->multtransadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1190cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1191cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1192cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1193537820f0SBarry Smith   ierr = VecScatterEnd(a->lvec,zz,ADD_VALUES,SCATTER_REVERSE,a->Mvctx);CHKERRQ(ierr);
11943a40ed3dSBarry Smith   PetscFunctionReturn(0);
1195cee3aa6bSSatish Balay }
1196cee3aa6bSSatish Balay 
1197cee3aa6bSSatish Balay /*
1198cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1199cee3aa6bSSatish Balay    diagonal block
1200cee3aa6bSSatish Balay */
12015615d1e5SSatish Balay #undef __FUNC__
12025615d1e5SSatish Balay #define __FUNC__ "MatGetDiagonal_MPIBAIJ"
1203ec1ea8d8SLois Curfman McInnes int MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1204cee3aa6bSSatish Balay {
1205cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
12063a40ed3dSBarry Smith   int         ierr;
1207d64ed03dSBarry Smith 
1208d64ed03dSBarry Smith   PetscFunctionBegin;
1209a8c6a408SBarry Smith   if (a->M != a->N) SETERRQ(PETSC_ERR_SUP,0,"Supports only square matrix where A->A is diag block");
12103a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
12113a40ed3dSBarry Smith   PetscFunctionReturn(0);
1212cee3aa6bSSatish Balay }
1213cee3aa6bSSatish Balay 
12145615d1e5SSatish Balay #undef __FUNC__
12155615d1e5SSatish Balay #define __FUNC__ "MatScale_MPIBAIJ"
1216ec1ea8d8SLois Curfman McInnes int MatScale_MPIBAIJ(Scalar *aa,Mat A)
1217cee3aa6bSSatish Balay {
1218cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
1219cee3aa6bSSatish Balay   int         ierr;
1220d64ed03dSBarry Smith 
1221d64ed03dSBarry Smith   PetscFunctionBegin;
1222cee3aa6bSSatish Balay   ierr = MatScale(aa,a->A);CHKERRQ(ierr);
1223cee3aa6bSSatish Balay   ierr = MatScale(aa,a->B);CHKERRQ(ierr);
12243a40ed3dSBarry Smith   PetscFunctionReturn(0);
1225cee3aa6bSSatish Balay }
1226026e39d0SSatish Balay 
12275615d1e5SSatish Balay #undef __FUNC__
12285615d1e5SSatish Balay #define __FUNC__ "MatGetSize_MPIBAIJ"
1229ec1ea8d8SLois Curfman McInnes int MatGetSize_MPIBAIJ(Mat matin,int *m,int *n)
123057b952d6SSatish Balay {
123157b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1232d64ed03dSBarry Smith 
1233d64ed03dSBarry Smith   PetscFunctionBegin;
1234bd7f49f5SSatish Balay   if (m) *m = mat->M;
1235bd7f49f5SSatish Balay   if (n) *n = mat->N;
12363a40ed3dSBarry Smith   PetscFunctionReturn(0);
123757b952d6SSatish Balay }
123857b952d6SSatish Balay 
12395615d1e5SSatish Balay #undef __FUNC__
12405615d1e5SSatish Balay #define __FUNC__ "MatGetLocalSize_MPIBAIJ"
1241ec1ea8d8SLois Curfman McInnes int MatGetLocalSize_MPIBAIJ(Mat matin,int *m,int *n)
124257b952d6SSatish Balay {
124357b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1244d64ed03dSBarry Smith 
1245d64ed03dSBarry Smith   PetscFunctionBegin;
1246f830108cSBarry Smith   *m = mat->m; *n = mat->n;
12473a40ed3dSBarry Smith   PetscFunctionReturn(0);
124857b952d6SSatish Balay }
124957b952d6SSatish Balay 
12505615d1e5SSatish Balay #undef __FUNC__
12515615d1e5SSatish Balay #define __FUNC__ "MatGetOwnershipRange_MPIBAIJ"
1252ec1ea8d8SLois Curfman McInnes int MatGetOwnershipRange_MPIBAIJ(Mat matin,int *m,int *n)
125357b952d6SSatish Balay {
125457b952d6SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1255d64ed03dSBarry Smith 
1256d64ed03dSBarry Smith   PetscFunctionBegin;
125757b952d6SSatish Balay   *m = mat->rstart*mat->bs; *n = mat->rend*mat->bs;
12583a40ed3dSBarry Smith   PetscFunctionReturn(0);
125957b952d6SSatish Balay }
126057b952d6SSatish Balay 
12615615d1e5SSatish Balay #undef __FUNC__
12625615d1e5SSatish Balay #define __FUNC__ "MatGetRow_MPIBAIJ"
1263acdf5bf4SSatish Balay int MatGetRow_MPIBAIJ(Mat matin,int row,int *nz,int **idx,Scalar **v)
1264acdf5bf4SSatish Balay {
1265acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *) matin->data;
1266acdf5bf4SSatish Balay   Scalar     *vworkA, *vworkB, **pvA, **pvB,*v_p;
1267acdf5bf4SSatish Balay   int        bs = mat->bs, bs2 = mat->bs2, i, ierr, *cworkA, *cworkB, **pcA, **pcB;
1268d9d09a02SSatish Balay   int        nztot, nzA, nzB, lrow, brstart = mat->rstart*bs, brend = mat->rend*bs;
1269d9d09a02SSatish Balay   int        *cmap, *idx_p,cstart = mat->cstart;
1270acdf5bf4SSatish Balay 
1271d64ed03dSBarry Smith   PetscFunctionBegin;
1272a8c6a408SBarry Smith   if (mat->getrowactive == PETSC_TRUE) SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"Already active");
1273acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1274acdf5bf4SSatish Balay 
1275acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1276acdf5bf4SSatish Balay     /*
1277acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1278acdf5bf4SSatish Balay     */
1279acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *) mat->A->data,*Ba = (Mat_SeqBAIJ *) mat->B->data;
1280bd16c2feSSatish Balay     int     max = 1,mbs = mat->mbs,tmp;
1281bd16c2feSSatish Balay     for ( i=0; i<mbs; i++ ) {
1282acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
1283acdf5bf4SSatish Balay       if (max < tmp) { max = tmp; }
1284acdf5bf4SSatish Balay     }
1285549d3d68SSatish Balay     mat->rowvalues = (Scalar *) PetscMalloc( max*bs2*(sizeof(int)+sizeof(Scalar)));CHKPTRQ(mat->rowvalues);
1286acdf5bf4SSatish Balay     mat->rowindices = (int *) (mat->rowvalues + max*bs2);
1287acdf5bf4SSatish Balay   }
1288acdf5bf4SSatish Balay 
1289a8c6a408SBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_ERR_SUP,0,"Only local rows")
1290d9d09a02SSatish Balay   lrow = row - brstart;
1291acdf5bf4SSatish Balay 
1292acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1293acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1294acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1295f830108cSBarry Smith   ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1296f830108cSBarry Smith   ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1297acdf5bf4SSatish Balay   nztot = nzA + nzB;
1298acdf5bf4SSatish Balay 
1299acdf5bf4SSatish Balay   cmap  = mat->garray;
1300acdf5bf4SSatish Balay   if (v  || idx) {
1301acdf5bf4SSatish Balay     if (nztot) {
1302acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1303acdf5bf4SSatish Balay       int imark = -1;
1304acdf5bf4SSatish Balay       if (v) {
1305acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1306acdf5bf4SSatish Balay         for ( i=0; i<nzB; i++ ) {
1307d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart)   v_p[i] = vworkB[i];
1308acdf5bf4SSatish Balay           else break;
1309acdf5bf4SSatish Balay         }
1310acdf5bf4SSatish Balay         imark = i;
1311acdf5bf4SSatish Balay         for ( i=0; i<nzA; i++ )     v_p[imark+i] = vworkA[i];
1312acdf5bf4SSatish Balay         for ( i=imark; i<nzB; i++ ) v_p[nzA+i]   = vworkB[i];
1313acdf5bf4SSatish Balay       }
1314acdf5bf4SSatish Balay       if (idx) {
1315acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1316acdf5bf4SSatish Balay         if (imark > -1) {
1317acdf5bf4SSatish Balay           for ( i=0; i<imark; i++ ) {
1318bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1319acdf5bf4SSatish Balay           }
1320acdf5bf4SSatish Balay         } else {
1321acdf5bf4SSatish Balay           for ( i=0; i<nzB; i++ ) {
1322d9d09a02SSatish Balay             if (cmap[cworkB[i]/bs] < cstart)
1323d9d09a02SSatish Balay               idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1324acdf5bf4SSatish Balay             else break;
1325acdf5bf4SSatish Balay           }
1326acdf5bf4SSatish Balay           imark = i;
1327acdf5bf4SSatish Balay         }
1328d9d09a02SSatish Balay         for ( i=0; i<nzA; i++ )     idx_p[imark+i] = cstart*bs + cworkA[i];
1329d9d09a02SSatish Balay         for ( i=imark; i<nzB; i++ ) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1330acdf5bf4SSatish Balay       }
1331d64ed03dSBarry Smith     } else {
1332d212a18eSSatish Balay       if (idx) *idx = 0;
1333d212a18eSSatish Balay       if (v)   *v   = 0;
1334d212a18eSSatish Balay     }
1335acdf5bf4SSatish Balay   }
1336acdf5bf4SSatish Balay   *nz = nztot;
1337f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1338f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
13393a40ed3dSBarry Smith   PetscFunctionReturn(0);
1340acdf5bf4SSatish Balay }
1341acdf5bf4SSatish Balay 
13425615d1e5SSatish Balay #undef __FUNC__
13435615d1e5SSatish Balay #define __FUNC__ "MatRestoreRow_MPIBAIJ"
1344acdf5bf4SSatish Balay int MatRestoreRow_MPIBAIJ(Mat mat,int row,int *nz,int **idx,Scalar **v)
1345acdf5bf4SSatish Balay {
1346acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1347d64ed03dSBarry Smith 
1348d64ed03dSBarry Smith   PetscFunctionBegin;
1349acdf5bf4SSatish Balay   if (baij->getrowactive == PETSC_FALSE) {
1350a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_WRONGSTATE,0,"MatGetRow not called");
1351acdf5bf4SSatish Balay   }
1352acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13533a40ed3dSBarry Smith   PetscFunctionReturn(0);
1354acdf5bf4SSatish Balay }
1355acdf5bf4SSatish Balay 
13565615d1e5SSatish Balay #undef __FUNC__
13575615d1e5SSatish Balay #define __FUNC__ "MatGetBlockSize_MPIBAIJ"
1358ec1ea8d8SLois Curfman McInnes int MatGetBlockSize_MPIBAIJ(Mat mat,int *bs)
13595a838052SSatish Balay {
13605a838052SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
1361d64ed03dSBarry Smith 
1362d64ed03dSBarry Smith   PetscFunctionBegin;
13635a838052SSatish Balay   *bs = baij->bs;
13643a40ed3dSBarry Smith   PetscFunctionReturn(0);
13655a838052SSatish Balay }
13665a838052SSatish Balay 
13675615d1e5SSatish Balay #undef __FUNC__
13685615d1e5SSatish Balay #define __FUNC__ "MatZeroEntries_MPIBAIJ"
1369ec1ea8d8SLois Curfman McInnes int MatZeroEntries_MPIBAIJ(Mat A)
137058667388SSatish Balay {
137158667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data;
137258667388SSatish Balay   int         ierr;
1373d64ed03dSBarry Smith 
1374d64ed03dSBarry Smith   PetscFunctionBegin;
137558667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
137658667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
13773a40ed3dSBarry Smith   PetscFunctionReturn(0);
137858667388SSatish Balay }
13790ac07820SSatish Balay 
13805615d1e5SSatish Balay #undef __FUNC__
13815615d1e5SSatish Balay #define __FUNC__ "MatGetInfo_MPIBAIJ"
1382ec1ea8d8SLois Curfman McInnes int MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
13830ac07820SSatish Balay {
13844e220ebcSLois Curfman McInnes   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) matin->data;
13854e220ebcSLois Curfman McInnes   Mat         A = a->A, B = a->B;
13867d57db60SLois Curfman McInnes   int         ierr;
13877d57db60SLois Curfman McInnes   double      isend[5], irecv[5];
13880ac07820SSatish Balay 
1389d64ed03dSBarry Smith   PetscFunctionBegin;
13904e220ebcSLois Curfman McInnes   info->block_size     = (double)a->bs;
13914e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
13920e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1393de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
13944e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
13950e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1396de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
13970ac07820SSatish Balay   if (flag == MAT_LOCAL) {
13984e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
13994e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14004e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14014e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14024e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14030ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1404f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_MAX,matin->comm);CHKERRQ(ierr);
14054e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14064e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14074e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14084e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14094e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14100ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1411f7cdd7c9SBarry Smith     ierr = MPI_Allreduce(isend,irecv,5,MPI_DOUBLE,MPI_SUM,matin->comm);CHKERRQ(ierr);
14124e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14134e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14144e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14154e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14164e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1417d41123aaSBarry Smith   } else {
1418d41123aaSBarry Smith     SETERRQ1(1,1,"Unknown MatInfoType argument %d",flag);
14190ac07820SSatish Balay   }
14205a5d4f66SBarry Smith   info->rows_global       = (double)a->M;
14215a5d4f66SBarry Smith   info->columns_global    = (double)a->N;
14225a5d4f66SBarry Smith   info->rows_local        = (double)a->m;
14235a5d4f66SBarry Smith   info->columns_local     = (double)a->N;
14244e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14254e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14264e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14273a40ed3dSBarry Smith   PetscFunctionReturn(0);
14280ac07820SSatish Balay }
14290ac07820SSatish Balay 
14305615d1e5SSatish Balay #undef __FUNC__
14315615d1e5SSatish Balay #define __FUNC__ "MatSetOption_MPIBAIJ"
1432ec1ea8d8SLois Curfman McInnes int MatSetOption_MPIBAIJ(Mat A,MatOption op)
143358667388SSatish Balay {
143458667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *) A->data;
143598305bb5SBarry Smith   int         ierr;
143658667388SSatish Balay 
1437d64ed03dSBarry Smith   PetscFunctionBegin;
143858667388SSatish Balay   if (op == MAT_NO_NEW_NONZERO_LOCATIONS ||
143958667388SSatish Balay       op == MAT_YES_NEW_NONZERO_LOCATIONS ||
14406da5968aSLois Curfman McInnes       op == MAT_COLUMNS_UNSORTED ||
1441c2653b3dSLois Curfman McInnes       op == MAT_COLUMNS_SORTED ||
14424787f768SSatish Balay       op == MAT_NEW_NONZERO_ALLOCATION_ERR ||
14434787f768SSatish Balay       op == MAT_NEW_NONZERO_LOCATION_ERR) {
144498305bb5SBarry Smith         ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
144598305bb5SBarry Smith         ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1446b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROW_ORIENTED) {
1447aeafbbfcSLois Curfman McInnes         a->roworiented = 1;
144898305bb5SBarry Smith         ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
144998305bb5SBarry Smith         ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
1450b1fbbac0SLois Curfman McInnes   } else if (op == MAT_ROWS_SORTED ||
14516da5968aSLois Curfman McInnes              op == MAT_ROWS_UNSORTED ||
145258667388SSatish Balay              op == MAT_SYMMETRIC ||
145358667388SSatish Balay              op == MAT_STRUCTURALLY_SYMMETRIC ||
1454b51ba29fSSatish Balay              op == MAT_YES_NEW_DIAGONALS ||
145598305bb5SBarry Smith              op == MAT_USE_HASH_TABLE) {
145658667388SSatish Balay     PLogInfo(A,"Info:MatSetOption_MPIBAIJ:Option ignored\n");
145798305bb5SBarry Smith   } else if (op == MAT_COLUMN_ORIENTED) {
145858667388SSatish Balay     a->roworiented = 0;
145998305bb5SBarry Smith     ierr = MatSetOption(a->A,op);CHKERRQ(ierr);
146098305bb5SBarry Smith     ierr = MatSetOption(a->B,op);CHKERRQ(ierr);
14612b362799SSatish Balay   } else if (op == MAT_IGNORE_OFF_PROC_ENTRIES) {
146290f02eecSBarry Smith     a->donotstash = 1;
1463d64ed03dSBarry Smith   } else if (op == MAT_NO_NEW_DIAGONALS) {
1464d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"MAT_NO_NEW_DIAGONALS");
1465133cdb44SSatish Balay   } else if (op == MAT_USE_HASH_TABLE) {
1466133cdb44SSatish Balay     a->ht_flag = 1;
1467d64ed03dSBarry Smith   } else {
1468d64ed03dSBarry Smith     SETERRQ(PETSC_ERR_SUP,0,"unknown option");
1469d64ed03dSBarry Smith   }
14703a40ed3dSBarry Smith   PetscFunctionReturn(0);
147158667388SSatish Balay }
147258667388SSatish Balay 
14735615d1e5SSatish Balay #undef __FUNC__
14745615d1e5SSatish Balay #define __FUNC__ "MatTranspose_MPIBAIJ("
1475ec1ea8d8SLois Curfman McInnes int MatTranspose_MPIBAIJ(Mat A,Mat *matout)
14760ac07820SSatish Balay {
14770ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) A->data;
14780ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
14790ac07820SSatish Balay   Mat        B;
148040011551SBarry Smith   int        ierr,M=baij->M,N=baij->N,*ai,*aj,i,*rvals,j,k,col;
14810ac07820SSatish Balay   int        bs=baij->bs,mbs=baij->mbs;
14820ac07820SSatish Balay   Scalar     *a;
14830ac07820SSatish Balay 
1484d64ed03dSBarry Smith   PetscFunctionBegin;
1485a8c6a408SBarry Smith   if (matout == PETSC_NULL && M != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"Square matrix only for in-place");
148628937c7bSBarry Smith   ierr = MatCreateMPIBAIJ(A->comm,baij->bs,baij->n,baij->m,N,M,0,PETSC_NULL,0,PETSC_NULL,&B);
14870ac07820SSatish Balay CHKERRQ(ierr);
14880ac07820SSatish Balay 
14890ac07820SSatish Balay   /* copy over the A part */
14900ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->A->data;
14910ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
14920ac07820SSatish Balay   rvals = (int *) PetscMalloc(bs*sizeof(int));CHKPTRQ(rvals);
14930ac07820SSatish Balay 
14940ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
14950ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
14960ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
14970ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
14980ac07820SSatish Balay       col = (baij->cstart+aj[j])*bs;
14990ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15000ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15010ac07820SSatish Balay         col++; a += bs;
15020ac07820SSatish Balay       }
15030ac07820SSatish Balay     }
15040ac07820SSatish Balay   }
15050ac07820SSatish Balay   /* copy over the B part */
15060ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*) baij->B->data;
15070ac07820SSatish Balay   ai = Aloc->i; aj = Aloc->j; a = Aloc->a;
15080ac07820SSatish Balay   for ( i=0; i<mbs; i++ ) {
15090ac07820SSatish Balay     rvals[0] = bs*(baij->rstart + i);
15100ac07820SSatish Balay     for ( j=1; j<bs; j++ ) { rvals[j] = rvals[j-1] + 1; }
15110ac07820SSatish Balay     for ( j=ai[i]; j<ai[i+1]; j++ ) {
15120ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
15130ac07820SSatish Balay       for (k=0; k<bs; k++ ) {
15140ac07820SSatish Balay         ierr = MatSetValues(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
15150ac07820SSatish Balay         col++; a += bs;
15160ac07820SSatish Balay       }
15170ac07820SSatish Balay     }
15180ac07820SSatish Balay   }
1519606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
15200ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15210ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
15220ac07820SSatish Balay 
15230ac07820SSatish Balay   if (matout != PETSC_NULL) {
15240ac07820SSatish Balay     *matout = B;
15250ac07820SSatish Balay   } else {
1526f830108cSBarry Smith     PetscOps *Abops;
1527cc2dc46cSBarry Smith     MatOps   Aops;
1528f830108cSBarry Smith 
15290ac07820SSatish Balay     /* This isn't really an in-place transpose .... but free data structures from baij */
1530606d414cSSatish Balay     ierr = PetscFree(baij->rowners); CHKERRQ(ierr);
15310ac07820SSatish Balay     ierr = MatDestroy(baij->A);CHKERRQ(ierr);
15320ac07820SSatish Balay     ierr = MatDestroy(baij->B);CHKERRQ(ierr);
1533aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
1534606d414cSSatish Balay     if (baij->colmap) {ierr = TableDelete(baij->colmap);CHKERRQ(ierr);}
1535b1fc9764SSatish Balay #else
1536606d414cSSatish Balay     if (baij->colmap) {ierr = PetscFree(baij->colmap);CHKERRQ(ierr);}
1537b1fc9764SSatish Balay #endif
1538606d414cSSatish Balay     if (baij->garray) {ierr = PetscFree(baij->garray);CHKERRQ(ierr);}
1539606d414cSSatish Balay     if (baij->lvec) {ierr = VecDestroy(baij->lvec);CHKERRQ(ierr);}
1540606d414cSSatish Balay     if (baij->Mvctx) {ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr);}
1541606d414cSSatish Balay     ierr = PetscFree(baij);CHKERRQ(ierr);
1542f830108cSBarry Smith 
1543f830108cSBarry Smith     /*
1544f830108cSBarry Smith        This is horrible, horrible code. We need to keep the
1545f830108cSBarry Smith       A pointers for the bops and ops but copy everything
1546f830108cSBarry Smith       else from C.
1547f830108cSBarry Smith     */
1548f830108cSBarry Smith     Abops   = A->bops;
1549f830108cSBarry Smith     Aops    = A->ops;
1550549d3d68SSatish Balay     ierr    = PetscMemcpy(A,B,sizeof(struct _p_Mat));CHKERRQ(ierr);
1551f830108cSBarry Smith     A->bops = Abops;
1552f830108cSBarry Smith     A->ops  = Aops;
1553f830108cSBarry Smith 
15540ac07820SSatish Balay     PetscHeaderDestroy(B);
15550ac07820SSatish Balay   }
15563a40ed3dSBarry Smith   PetscFunctionReturn(0);
15570ac07820SSatish Balay }
15580e95ebc0SSatish Balay 
15595615d1e5SSatish Balay #undef __FUNC__
15605615d1e5SSatish Balay #define __FUNC__ "MatDiagonalScale_MPIBAIJ"
156136c4a09eSSatish Balay int MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
15620e95ebc0SSatish Balay {
156336c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *) mat->data;
156436c4a09eSSatish Balay   Mat         a = baij->A, b = baij->B;
15650e95ebc0SSatish Balay   int         ierr,s1,s2,s3;
15660e95ebc0SSatish Balay 
1567d64ed03dSBarry Smith   PetscFunctionBegin;
156836c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
156936c4a09eSSatish Balay   if (rr) {
157036c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
157136c4a09eSSatish Balay     if (s1!=s3) SETERRQ(PETSC_ERR_ARG_SIZ,0,"right vector non-conforming local size");
157236c4a09eSSatish Balay     /* Overlap communication with computation. */
157336c4a09eSSatish Balay     ierr = VecScatterBegin(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
157436c4a09eSSatish Balay   }
15750e95ebc0SSatish Balay   if (ll) {
15760e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
157736c4a09eSSatish Balay     if (s1!=s2) SETERRQ(PETSC_ERR_ARG_SIZ,0,"left vector non-conforming local size");
157836c4a09eSSatish Balay     ierr = (*b->ops->diagonalscale)(b,ll,0);CHKERRQ(ierr);
15790e95ebc0SSatish Balay   }
158036c4a09eSSatish Balay   /* scale  the diagonal block */
158136c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
158236c4a09eSSatish Balay 
158336c4a09eSSatish Balay   if (rr) {
158436c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
158536c4a09eSSatish Balay     ierr = VecScatterEnd(rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr);
158636c4a09eSSatish Balay     ierr = (*b->ops->diagonalscale)(b,0,baij->lvec);CHKERRQ(ierr);
158736c4a09eSSatish Balay   }
158836c4a09eSSatish Balay 
15893a40ed3dSBarry Smith   PetscFunctionReturn(0);
15900e95ebc0SSatish Balay }
15910e95ebc0SSatish Balay 
15925615d1e5SSatish Balay #undef __FUNC__
15935615d1e5SSatish Balay #define __FUNC__ "MatZeroRows_MPIBAIJ"
1594ec1ea8d8SLois Curfman McInnes int MatZeroRows_MPIBAIJ(Mat A,IS is,Scalar *diag)
15950ac07820SSatish Balay {
15960ac07820SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ *) A->data;
15970ac07820SSatish Balay   int            i,ierr,N, *rows,*owners = l->rowners,size = l->size;
1598a07cd24cSSatish Balay   int            *procs,*nprocs,j,found,idx,nsends,*work,row;
15990ac07820SSatish Balay   int            nmax,*svalues,*starts,*owner,nrecvs,rank = l->rank;
16000ac07820SSatish Balay   int            *rvalues,tag = A->tag,count,base,slen,n,*source;
1601a07cd24cSSatish Balay   int            *lens,imdex,*lrows,*values,bs=l->bs,rstart_bs=l->rstart_bs;
16020ac07820SSatish Balay   MPI_Comm       comm = A->comm;
16030ac07820SSatish Balay   MPI_Request    *send_waits,*recv_waits;
16040ac07820SSatish Balay   MPI_Status     recv_status,*send_status;
16050ac07820SSatish Balay   IS             istmp;
16060ac07820SSatish Balay 
1607d64ed03dSBarry Smith   PetscFunctionBegin;
16080ac07820SSatish Balay   ierr = ISGetSize(is,&N);CHKERRQ(ierr);
16090ac07820SSatish Balay   ierr = ISGetIndices(is,&rows);CHKERRQ(ierr);
16100ac07820SSatish Balay 
16110ac07820SSatish Balay   /*  first count number of contributors to each processor */
16120ac07820SSatish Balay   nprocs = (int *) PetscMalloc( 2*size*sizeof(int) );CHKPTRQ(nprocs);
1613549d3d68SSatish Balay   ierr   = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr);
1614549d3d68SSatish Balay  procs   = nprocs + size;
16150ac07820SSatish Balay   owner  = (int *) PetscMalloc((N+1)*sizeof(int));CHKPTRQ(owner); /* see note*/
16160ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16170ac07820SSatish Balay     idx = rows[i];
16180ac07820SSatish Balay     found = 0;
16190ac07820SSatish Balay     for ( j=0; j<size; j++ ) {
16200ac07820SSatish Balay       if (idx >= owners[j]*bs && idx < owners[j+1]*bs) {
16210ac07820SSatish Balay         nprocs[j]++; procs[j] = 1; owner[i] = j; found = 1; break;
16220ac07820SSatish Balay       }
16230ac07820SSatish Balay     }
1624a8c6a408SBarry Smith     if (!found) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Index out of range");
16250ac07820SSatish Balay   }
16260ac07820SSatish Balay   nsends = 0;  for ( i=0; i<size; i++ ) { nsends += procs[i];}
16270ac07820SSatish Balay 
16280ac07820SSatish Balay   /* inform other processors of number of messages and max length*/
16290ac07820SSatish Balay   work   = (int *) PetscMalloc( size*sizeof(int) );CHKPTRQ(work);
1630ca161407SBarry Smith   ierr   = MPI_Allreduce( procs, work,size,MPI_INT,MPI_SUM,comm);CHKERRQ(ierr);
16310ac07820SSatish Balay   nrecvs = work[rank];
1632ca161407SBarry Smith   ierr   = MPI_Allreduce( nprocs, work,size,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr);
16330ac07820SSatish Balay   nmax   = work[rank];
1634606d414cSSatish Balay   ierr = PetscFree(work);CHKERRQ(ierr);
16350ac07820SSatish Balay 
16360ac07820SSatish Balay   /* post receives:   */
1637d64ed03dSBarry Smith   rvalues = (int *) PetscMalloc((nrecvs+1)*(nmax+1)*sizeof(int));CHKPTRQ(rvalues);
1638d64ed03dSBarry Smith   recv_waits = (MPI_Request *) PetscMalloc((nrecvs+1)*sizeof(MPI_Request));CHKPTRQ(recv_waits);
16390ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
1640ca161407SBarry Smith     ierr = MPI_Irecv(rvalues+nmax*i,nmax,MPI_INT,MPI_ANY_SOURCE,tag,comm,recv_waits+i);CHKERRQ(ierr);
16410ac07820SSatish Balay   }
16420ac07820SSatish Balay 
16430ac07820SSatish Balay   /* do sends:
16440ac07820SSatish Balay      1) starts[i] gives the starting index in svalues for stuff going to
16450ac07820SSatish Balay      the ith processor
16460ac07820SSatish Balay   */
16470ac07820SSatish Balay   svalues = (int *) PetscMalloc( (N+1)*sizeof(int) );CHKPTRQ(svalues);
1648ca161407SBarry Smith   send_waits = (MPI_Request *) PetscMalloc( (nsends+1)*sizeof(MPI_Request));CHKPTRQ(send_waits);
16490ac07820SSatish Balay   starts = (int *) PetscMalloc( (size+1)*sizeof(int) );CHKPTRQ(starts);
16500ac07820SSatish Balay   starts[0] = 0;
16510ac07820SSatish Balay   for ( i=1; i<size; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16520ac07820SSatish Balay   for ( i=0; i<N; i++ ) {
16530ac07820SSatish Balay     svalues[starts[owner[i]]++] = rows[i];
16540ac07820SSatish Balay   }
16550ac07820SSatish Balay   ISRestoreIndices(is,&rows);
16560ac07820SSatish Balay 
16570ac07820SSatish Balay   starts[0] = 0;
16580ac07820SSatish Balay   for ( i=1; i<size+1; i++ ) { starts[i] = starts[i-1] + nprocs[i-1];}
16590ac07820SSatish Balay   count = 0;
16600ac07820SSatish Balay   for ( i=0; i<size; i++ ) {
16610ac07820SSatish Balay     if (procs[i]) {
1662ca161407SBarry Smith       ierr = MPI_Isend(svalues+starts[i],nprocs[i],MPI_INT,i,tag,comm,send_waits+count++);CHKERRQ(ierr);
16630ac07820SSatish Balay     }
16640ac07820SSatish Balay   }
1665606d414cSSatish Balay   ierr = PetscFree(starts);CHKERRQ(ierr);
16660ac07820SSatish Balay 
16670ac07820SSatish Balay   base = owners[rank]*bs;
16680ac07820SSatish Balay 
16690ac07820SSatish Balay   /*  wait on receives */
16700ac07820SSatish Balay   lens   = (int *) PetscMalloc( 2*(nrecvs+1)*sizeof(int) );CHKPTRQ(lens);
16710ac07820SSatish Balay   source = lens + nrecvs;
16720ac07820SSatish Balay   count  = nrecvs; slen = 0;
16730ac07820SSatish Balay   while (count) {
1674ca161407SBarry Smith     ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr);
16750ac07820SSatish Balay     /* unpack receives into our local space */
1676ca161407SBarry Smith     ierr = MPI_Get_count(&recv_status,MPI_INT,&n);CHKERRQ(ierr);
16770ac07820SSatish Balay     source[imdex]  = recv_status.MPI_SOURCE;
16780ac07820SSatish Balay     lens[imdex]  = n;
16790ac07820SSatish Balay     slen += n;
16800ac07820SSatish Balay     count--;
16810ac07820SSatish Balay   }
1682606d414cSSatish Balay   ierr = PetscFree(recv_waits); CHKERRQ(ierr);
16830ac07820SSatish Balay 
16840ac07820SSatish Balay   /* move the data into the send scatter */
16850ac07820SSatish Balay   lrows = (int *) PetscMalloc( (slen+1)*sizeof(int) );CHKPTRQ(lrows);
16860ac07820SSatish Balay   count = 0;
16870ac07820SSatish Balay   for ( i=0; i<nrecvs; i++ ) {
16880ac07820SSatish Balay     values = rvalues + i*nmax;
16890ac07820SSatish Balay     for ( j=0; j<lens[i]; j++ ) {
16900ac07820SSatish Balay       lrows[count++] = values[j] - base;
16910ac07820SSatish Balay     }
16920ac07820SSatish Balay   }
1693606d414cSSatish Balay   ierr = PetscFree(rvalues);CHKERRQ(ierr);
1694606d414cSSatish Balay   ierr = PetscFree(lens);CHKERRQ(ierr);
1695606d414cSSatish Balay   ierr = PetscFree(owner);CHKERRQ(ierr);
1696606d414cSSatish Balay   ierr = PetscFree(nprocs);CHKERRQ(ierr);
16970ac07820SSatish Balay 
16980ac07820SSatish Balay   /* actually zap the local rows */
1699029af93fSBarry Smith   ierr = ISCreateGeneral(PETSC_COMM_SELF,slen,lrows,&istmp);CHKERRQ(ierr);
17000ac07820SSatish Balay   PLogObjectParent(A,istmp);
1701a07cd24cSSatish Balay 
170272dacd9aSBarry Smith   /*
170372dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
170472dacd9aSBarry Smith      is square and the user wishes to set the diagonal we use seperate
170572dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
170672dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
170772dacd9aSBarry Smith 
170872dacd9aSBarry Smith        Contributed by: Mathew Knepley
170972dacd9aSBarry Smith   */
17109c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
17110ac07820SSatish Balay   ierr = MatZeroRows(l->B,istmp,0);CHKERRQ(ierr);
17129c957beeSSatish Balay   if (diag && (l->A->M == l->A->N)) {
17139c957beeSSatish Balay     ierr      = MatZeroRows(l->A,istmp,diag);CHKERRQ(ierr);
17149c957beeSSatish Balay   } else if (diag) {
17159c957beeSSatish Balay     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
1716fa46199cSSatish Balay     if (((Mat_SeqBAIJ*)l->A->data)->nonew) {
1717fa46199cSSatish Balay       SETERRQ(PETSC_ERR_SUP,0,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1718fa46199cSSatish Balay MAT_NO_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
17196525c446SSatish Balay     }
1720a07cd24cSSatish Balay     for ( i = 0; i < slen; i++ ) {
1721a07cd24cSSatish Balay       row  = lrows[i] + rstart_bs;
1722a07cd24cSSatish Balay       ierr = MatSetValues(A,1,&row,1,&row,diag,INSERT_VALUES);CHKERRQ(ierr);
1723a07cd24cSSatish Balay     }
1724a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1725a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17269c957beeSSatish Balay   } else {
17279c957beeSSatish Balay     ierr = MatZeroRows(l->A,istmp,0);CHKERRQ(ierr);
1728a07cd24cSSatish Balay   }
17299c957beeSSatish Balay 
17309c957beeSSatish Balay   ierr = ISDestroy(istmp);CHKERRQ(ierr);
1731606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
1732a07cd24cSSatish Balay 
17330ac07820SSatish Balay   /* wait on sends */
17340ac07820SSatish Balay   if (nsends) {
1735d64ed03dSBarry Smith     send_status = (MPI_Status *) PetscMalloc(nsends*sizeof(MPI_Status));CHKPTRQ(send_status);
1736ca161407SBarry Smith     ierr        = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr);
1737606d414cSSatish Balay     ierr = PetscFree(send_status);CHKERRQ(ierr);
17380ac07820SSatish Balay   }
1739606d414cSSatish Balay   ierr = PetscFree(send_waits);CHKERRQ(ierr);
1740606d414cSSatish Balay   ierr = PetscFree(svalues);CHKERRQ(ierr);
17410ac07820SSatish Balay 
17423a40ed3dSBarry Smith   PetscFunctionReturn(0);
17430ac07820SSatish Balay }
174472dacd9aSBarry Smith 
17455615d1e5SSatish Balay #undef __FUNC__
17465615d1e5SSatish Balay #define __FUNC__ "MatPrintHelp_MPIBAIJ"
1747ec1ea8d8SLois Curfman McInnes int MatPrintHelp_MPIBAIJ(Mat A)
1748ba4ca20aSSatish Balay {
1749ba4ca20aSSatish Balay   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
175025fdafccSSatish Balay   MPI_Comm    comm = A->comm;
1751133cdb44SSatish Balay   static int  called = 0;
17523a40ed3dSBarry Smith   int         ierr;
1753ba4ca20aSSatish Balay 
1754d64ed03dSBarry Smith   PetscFunctionBegin;
17553a40ed3dSBarry Smith   if (!a->rank) {
17563a40ed3dSBarry Smith     ierr = MatPrintHelp_SeqBAIJ(a->A);CHKERRQ(ierr);
175725fdafccSSatish Balay   }
175825fdafccSSatish Balay   if (called) {PetscFunctionReturn(0);} else called = 1;
1759d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm," Options for MATMPIBAIJ matrix format (the defaults):\n");CHKERRQ(ierr);
1760d132466eSBarry Smith   ierr = (*PetscHelpPrintf)(comm,"  -mat_use_hash_table <factor>: Use hashtable for efficient matrix assembly\n");CHKERRQ(ierr);
17613a40ed3dSBarry Smith   PetscFunctionReturn(0);
1762ba4ca20aSSatish Balay }
17630ac07820SSatish Balay 
17645615d1e5SSatish Balay #undef __FUNC__
17655615d1e5SSatish Balay #define __FUNC__ "MatSetUnfactored_MPIBAIJ"
1766ec1ea8d8SLois Curfman McInnes int MatSetUnfactored_MPIBAIJ(Mat A)
1767bb5a7306SBarry Smith {
1768bb5a7306SBarry Smith   Mat_MPIBAIJ *a   = (Mat_MPIBAIJ*) A->data;
1769bb5a7306SBarry Smith   int         ierr;
1770d64ed03dSBarry Smith 
1771d64ed03dSBarry Smith   PetscFunctionBegin;
1772bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
17733a40ed3dSBarry Smith   PetscFunctionReturn(0);
1774bb5a7306SBarry Smith }
1775bb5a7306SBarry Smith 
17762e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat *);
17770ac07820SSatish Balay 
17787fc3c18eSBarry Smith #undef __FUNC__
17797fc3c18eSBarry Smith #define __FUNC__ "MatEqual_MPIBAIJ"
17807fc3c18eSBarry Smith int MatEqual_MPIBAIJ(Mat A, Mat B, PetscTruth *flag)
17817fc3c18eSBarry Smith {
17827fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *) B->data,*matA = (Mat_MPIBAIJ *) A->data;
17837fc3c18eSBarry Smith   Mat         a, b, c, d;
17847fc3c18eSBarry Smith   PetscTruth  flg;
17857fc3c18eSBarry Smith   int         ierr;
17867fc3c18eSBarry Smith 
17877fc3c18eSBarry Smith   PetscFunctionBegin;
17887fc3c18eSBarry Smith   if (B->type != MATMPIBAIJ) SETERRQ(PETSC_ERR_ARG_INCOMP,0,"Matrices must be same type");
17897fc3c18eSBarry Smith   a = matA->A; b = matA->B;
17907fc3c18eSBarry Smith   c = matB->A; d = matB->B;
17917fc3c18eSBarry Smith 
17927fc3c18eSBarry Smith   ierr = MatEqual(a, c, &flg);CHKERRQ(ierr);
17937fc3c18eSBarry Smith   if (flg == PETSC_TRUE) {
17947fc3c18eSBarry Smith     ierr = MatEqual(b, d, &flg);CHKERRQ(ierr);
17957fc3c18eSBarry Smith   }
17967fc3c18eSBarry Smith   ierr = MPI_Allreduce(&flg, flag, 1, MPI_INT, MPI_LAND, A->comm);CHKERRQ(ierr);
17977fc3c18eSBarry Smith   PetscFunctionReturn(0);
17987fc3c18eSBarry Smith }
17997fc3c18eSBarry Smith 
180079bdfe76SSatish Balay /* -------------------------------------------------------------------*/
1801cc2dc46cSBarry Smith static struct _MatOps MatOps_Values = {
1802cc2dc46cSBarry Smith   MatSetValues_MPIBAIJ,
1803cc2dc46cSBarry Smith   MatGetRow_MPIBAIJ,
1804cc2dc46cSBarry Smith   MatRestoreRow_MPIBAIJ,
1805cc2dc46cSBarry Smith   MatMult_MPIBAIJ,
1806cc2dc46cSBarry Smith   MatMultAdd_MPIBAIJ,
1807cc2dc46cSBarry Smith   MatMultTrans_MPIBAIJ,
1808cc2dc46cSBarry Smith   MatMultTransAdd_MPIBAIJ,
1809cc2dc46cSBarry Smith   0,
1810cc2dc46cSBarry Smith   0,
1811cc2dc46cSBarry Smith   0,
1812cc2dc46cSBarry Smith   0,
1813cc2dc46cSBarry Smith   0,
1814cc2dc46cSBarry Smith   0,
1815cc2dc46cSBarry Smith   0,
1816cc2dc46cSBarry Smith   MatTranspose_MPIBAIJ,
1817cc2dc46cSBarry Smith   MatGetInfo_MPIBAIJ,
18187fc3c18eSBarry Smith   MatEqual_MPIBAIJ,
1819cc2dc46cSBarry Smith   MatGetDiagonal_MPIBAIJ,
1820cc2dc46cSBarry Smith   MatDiagonalScale_MPIBAIJ,
1821cc2dc46cSBarry Smith   MatNorm_MPIBAIJ,
1822cc2dc46cSBarry Smith   MatAssemblyBegin_MPIBAIJ,
1823cc2dc46cSBarry Smith   MatAssemblyEnd_MPIBAIJ,
1824cc2dc46cSBarry Smith   0,
1825cc2dc46cSBarry Smith   MatSetOption_MPIBAIJ,
1826cc2dc46cSBarry Smith   MatZeroEntries_MPIBAIJ,
1827cc2dc46cSBarry Smith   MatZeroRows_MPIBAIJ,
1828cc2dc46cSBarry Smith   0,
1829cc2dc46cSBarry Smith   0,
1830cc2dc46cSBarry Smith   0,
1831cc2dc46cSBarry Smith   0,
1832cc2dc46cSBarry Smith   MatGetSize_MPIBAIJ,
1833cc2dc46cSBarry Smith   MatGetLocalSize_MPIBAIJ,
1834cc2dc46cSBarry Smith   MatGetOwnershipRange_MPIBAIJ,
1835cc2dc46cSBarry Smith   0,
1836cc2dc46cSBarry Smith   0,
1837cc2dc46cSBarry Smith   0,
1838cc2dc46cSBarry Smith   0,
18392e8a6d31SBarry Smith   MatDuplicate_MPIBAIJ,
1840cc2dc46cSBarry Smith   0,
1841cc2dc46cSBarry Smith   0,
1842cc2dc46cSBarry Smith   0,
1843cc2dc46cSBarry Smith   0,
1844cc2dc46cSBarry Smith   0,
1845cc2dc46cSBarry Smith   MatGetSubMatrices_MPIBAIJ,
1846cc2dc46cSBarry Smith   MatIncreaseOverlap_MPIBAIJ,
1847cc2dc46cSBarry Smith   MatGetValues_MPIBAIJ,
1848cc2dc46cSBarry Smith   0,
1849cc2dc46cSBarry Smith   MatPrintHelp_MPIBAIJ,
1850cc2dc46cSBarry Smith   MatScale_MPIBAIJ,
1851cc2dc46cSBarry Smith   0,
1852cc2dc46cSBarry Smith   0,
1853cc2dc46cSBarry Smith   0,
1854cc2dc46cSBarry Smith   MatGetBlockSize_MPIBAIJ,
1855cc2dc46cSBarry Smith   0,
1856cc2dc46cSBarry Smith   0,
1857cc2dc46cSBarry Smith   0,
1858cc2dc46cSBarry Smith   0,
1859cc2dc46cSBarry Smith   0,
1860cc2dc46cSBarry Smith   0,
1861cc2dc46cSBarry Smith   MatSetUnfactored_MPIBAIJ,
1862cc2dc46cSBarry Smith   0,
1863cc2dc46cSBarry Smith   MatSetValuesBlocked_MPIBAIJ,
1864cc2dc46cSBarry Smith   0,
1865cc2dc46cSBarry Smith   0,
1866cc2dc46cSBarry Smith   0,
1867cc2dc46cSBarry Smith   MatGetMaps_Petsc};
186879bdfe76SSatish Balay 
18695ef9f2a5SBarry Smith 
1870e18c124aSSatish Balay EXTERN_C_BEGIN
18715ef9f2a5SBarry Smith #undef __FUNC__
18725ef9f2a5SBarry Smith #define __FUNC__ "MatGetDiagonalBlock_MPIBAIJ"
18735ef9f2a5SBarry Smith int MatGetDiagonalBlock_MPIBAIJ(Mat A,PetscTruth *iscopy,MatReuse reuse,Mat *a)
18745ef9f2a5SBarry Smith {
18755ef9f2a5SBarry Smith   PetscFunctionBegin;
18765ef9f2a5SBarry Smith   *a      = ((Mat_MPIBAIJ *)A->data)->A;
18775ef9f2a5SBarry Smith   *iscopy = PETSC_FALSE;
18785ef9f2a5SBarry Smith   PetscFunctionReturn(0);
18795ef9f2a5SBarry Smith }
1880e18c124aSSatish Balay EXTERN_C_END
188179bdfe76SSatish Balay 
18825615d1e5SSatish Balay #undef __FUNC__
18835615d1e5SSatish Balay #define __FUNC__ "MatCreateMPIBAIJ"
188479bdfe76SSatish Balay /*@C
188579bdfe76SSatish Balay    MatCreateMPIBAIJ - Creates a sparse parallel matrix in block AIJ format
188679bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
188779bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
188879bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
188979bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
189079bdfe76SSatish Balay 
1891db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
1892db81eaa0SLois Curfman McInnes 
189379bdfe76SSatish Balay    Input Parameters:
1894db81eaa0SLois Curfman McInnes +  comm - MPI communicator
189579bdfe76SSatish Balay .  bs   - size of blockk
189679bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
189792e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
189892e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
189992e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
190092e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
190192e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
1902be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
1903be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
190479bdfe76SSatish Balay .  d_nz  - number of block nonzeros per block row in diagonal portion of local
190579bdfe76SSatish Balay            submatrix  (same for all local rows)
19067fc3c18eSBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
190792e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
1908db81eaa0SLois Curfman McInnes            row) or PETSC_NULL.  You must leave room for the diagonal entry even if it is zero.
190992e8d321SLois Curfman McInnes .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
191079bdfe76SSatish Balay            submatrix (same for all local rows).
19117fc3c18eSBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
191292e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
191392e8d321SLois Curfman McInnes            each block row) or PETSC_NULL.
191479bdfe76SSatish Balay 
191579bdfe76SSatish Balay    Output Parameter:
191679bdfe76SSatish Balay .  A - the matrix
191779bdfe76SSatish Balay 
1918db81eaa0SLois Curfman McInnes    Options Database Keys:
1919db81eaa0SLois Curfman McInnes .   -mat_no_unroll - uses code that does not unroll the loops in the
1920db81eaa0SLois Curfman McInnes                      block calculations (much slower)
1921db81eaa0SLois Curfman McInnes .   -mat_block_size - size of the blocks to use
1922494eafd4SBarry Smith .   -mat_mpi - use the parallel matrix data structures even on one processor
1923494eafd4SBarry Smith                (defaults to using SeqBAIJ format on one processor)
19243ffaccefSLois Curfman McInnes 
1925b259b22eSLois Curfman McInnes    Notes:
192679bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
192779bdfe76SSatish Balay    (possibly both).
192879bdfe76SSatish Balay 
1929be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
1930be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
1931be79a94dSBarry Smith 
193279bdfe76SSatish Balay    Storage Information:
193379bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
193479bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
193579bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
193679bdfe76SSatish Balay    local matrix (a rectangular submatrix).
193779bdfe76SSatish Balay 
193879bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
193979bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
194079bdfe76SSatish Balay    d_nz=PETSC_DEFAULT and d_nnz=PETSC_NULL for PETSc to control dynamic
194179bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
194279bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
194379bdfe76SSatish Balay 
194479bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
194579bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
194679bdfe76SSatish Balay 
1947db81eaa0SLois Curfman McInnes .vb
1948db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
1949db81eaa0SLois Curfman McInnes           -------------------
1950db81eaa0SLois Curfman McInnes    row 3  |  o o o d d d o o o o o o
1951db81eaa0SLois Curfman McInnes    row 4  |  o o o d d d o o o o o o
1952db81eaa0SLois Curfman McInnes    row 5  |  o o o d d d o o o o o o
1953db81eaa0SLois Curfman McInnes           -------------------
1954db81eaa0SLois Curfman McInnes .ve
195579bdfe76SSatish Balay 
195679bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
195779bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
195879bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
195957b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
196079bdfe76SSatish Balay 
1961d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
1962d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
196379bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
196492e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
196592e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
19666da5968aSLois Curfman McInnes    matrices.
196779bdfe76SSatish Balay 
1968027ccd11SLois Curfman McInnes    Level: intermediate
1969027ccd11SLois Curfman McInnes 
197092e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
197179bdfe76SSatish Balay 
1972db81eaa0SLois Curfman McInnes .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateMPIAIJ()
197379bdfe76SSatish Balay @*/
197479bdfe76SSatish Balay int MatCreateMPIBAIJ(MPI_Comm comm,int bs,int m,int n,int M,int N,
197579bdfe76SSatish Balay                     int d_nz,int *d_nnz,int o_nz,int *o_nnz,Mat *A)
197679bdfe76SSatish Balay {
197779bdfe76SSatish Balay   Mat          B;
197879bdfe76SSatish Balay   Mat_MPIBAIJ  *b;
1979133cdb44SSatish Balay   int          ierr, i,sum[2],work[2],mbs,nbs,Mbs=PETSC_DECIDE,Nbs=PETSC_DECIDE,size,flg;
1980a2ab621fSBarry Smith   int          flag1 = 0,flag2 = 0;
198179bdfe76SSatish Balay 
1982d64ed03dSBarry Smith   PetscFunctionBegin;
1983962fb4a0SBarry Smith   ierr = OptionsGetInt(PETSC_NULL,"-mat_block_size",&bs,PETSC_NULL);CHKERRQ(ierr);
1984962fb4a0SBarry Smith 
1985a8c6a408SBarry Smith   if (bs < 1) SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Invalid block size specified, must be positive");
198636c4a09eSSatish Balay   if (d_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nz cannot be less than -1: value %d",d_nz);
198736c4a09eSSatish Balay   if (o_nz < -2) SETERRQ1(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nz cannot be less than -1: value %d",o_nz);
19884fdb0a08SBarry Smith   if (d_nnz) {
198936c4a09eSSatish Balay     for (i=0; i<m/bs; i++) {
19904fdb0a08SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"d_nnz cannot be less than -1: local row %d value %d",i,d_nnz[i]);
19914fdb0a08SBarry Smith     }
19924fdb0a08SBarry Smith   }
19934fdb0a08SBarry Smith   if (o_nnz) {
199436c4a09eSSatish Balay     for (i=0; i<m/bs; i++) {
19954fdb0a08SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_ERR_ARG_OUTOFRANGE,0,"o_nnz cannot be less than -1: local row %d value %d",i,o_nnz[i]);
19964fdb0a08SBarry Smith     }
19974fdb0a08SBarry Smith   }
19983914022bSBarry Smith 
1999d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2000494eafd4SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_mpibaij",&flag1);CHKERRQ(ierr);
2001494eafd4SBarry Smith   ierr = OptionsHasName(PETSC_NULL,"-mat_mpi",&flag2);CHKERRQ(ierr);
2002494eafd4SBarry Smith   if (!flag1 && !flag2 && size == 1) {
20033914022bSBarry Smith     if (M == PETSC_DECIDE) M = m;
20043914022bSBarry Smith     if (N == PETSC_DECIDE) N = n;
20053914022bSBarry Smith     ierr = MatCreateSeqBAIJ(comm,bs,M,N,d_nz,d_nnz,A);CHKERRQ(ierr);
20063a40ed3dSBarry Smith     PetscFunctionReturn(0);
20073914022bSBarry Smith   }
20083914022bSBarry Smith 
200979bdfe76SSatish Balay   *A = 0;
20103f1db9ecSBarry Smith   PetscHeaderCreate(B,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",comm,MatDestroy,MatView);
201179bdfe76SSatish Balay   PLogObjectCreate(B);
201279bdfe76SSatish Balay   B->data = (void *) (b = PetscNew(Mat_MPIBAIJ));CHKPTRQ(b);
2013549d3d68SSatish Balay   ierr    = PetscMemzero(b,sizeof(Mat_MPIBAIJ));CHKERRQ(ierr);
2014549d3d68SSatish Balay   ierr    = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
20154c50302cSBarry Smith 
2016e1311b90SBarry Smith   B->ops->destroy    = MatDestroy_MPIBAIJ;
2017e1311b90SBarry Smith   B->ops->view       = MatView_MPIBAIJ;
201890f02eecSBarry Smith   B->mapping    = 0;
201979bdfe76SSatish Balay   B->factor     = 0;
202079bdfe76SSatish Balay   B->assembled  = PETSC_FALSE;
202179bdfe76SSatish Balay 
2022e0fa3b82SLois Curfman McInnes   B->insertmode = NOT_SET_VALUES;
2023d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&b->rank);CHKERRQ(ierr);
2024d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&b->size);CHKERRQ(ierr);
202579bdfe76SSatish Balay 
2026d64ed03dSBarry Smith   if ( m == PETSC_DECIDE && (d_nnz != PETSC_NULL || o_nnz != PETSC_NULL)) {
2027a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"Cannot have PETSC_DECIDE rows but set d_nnz or o_nnz");
2028d64ed03dSBarry Smith   }
2029a8c6a408SBarry Smith   if ( M == PETSC_DECIDE && m == PETSC_DECIDE) {
2030a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either M or m should be specified");
2031a8c6a408SBarry Smith   }
2032a8c6a408SBarry Smith   if ( N == PETSC_DECIDE && n == PETSC_DECIDE) {
2033a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_OUTOFRANGE,0,"either N or n should be specified");
2034a8c6a408SBarry Smith   }
2035cee3aa6bSSatish Balay   if ( M != PETSC_DECIDE && m != PETSC_DECIDE) M = PETSC_DECIDE;
2036cee3aa6bSSatish Balay   if ( N != PETSC_DECIDE && n != PETSC_DECIDE) N = PETSC_DECIDE;
203779bdfe76SSatish Balay 
203879bdfe76SSatish Balay   if (M == PETSC_DECIDE || N == PETSC_DECIDE) {
203979bdfe76SSatish Balay     work[0] = m; work[1] = n;
204079bdfe76SSatish Balay     mbs = m/bs; nbs = n/bs;
2041ca161407SBarry Smith     ierr = MPI_Allreduce( work, sum,2,MPI_INT,MPI_SUM,comm );CHKERRQ(ierr);
204279bdfe76SSatish Balay     if (M == PETSC_DECIDE) {M = sum[0]; Mbs = M/bs;}
204379bdfe76SSatish Balay     if (N == PETSC_DECIDE) {N = sum[1]; Nbs = N/bs;}
204479bdfe76SSatish Balay   }
204579bdfe76SSatish Balay   if (m == PETSC_DECIDE) {
204679bdfe76SSatish Balay     Mbs = M/bs;
2047a8c6a408SBarry Smith     if (Mbs*bs != M) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global rows must be divisible by blocksize");
204879bdfe76SSatish Balay     mbs = Mbs/b->size + ((Mbs % b->size) > b->rank);
204979bdfe76SSatish Balay     m   = mbs*bs;
205079bdfe76SSatish Balay   }
205179bdfe76SSatish Balay   if (n == PETSC_DECIDE) {
205279bdfe76SSatish Balay     Nbs = N/bs;
2053a8c6a408SBarry Smith     if (Nbs*bs != N) SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of global cols must be divisible by blocksize");
205479bdfe76SSatish Balay     nbs = Nbs/b->size + ((Nbs % b->size) > b->rank);
205579bdfe76SSatish Balay     n   = nbs*bs;
205679bdfe76SSatish Balay   }
2057a8c6a408SBarry Smith   if (mbs*bs != m || nbs*bs != n) {
2058a8c6a408SBarry Smith     SETERRQ(PETSC_ERR_ARG_SIZ,0,"No of local rows, cols must be divisible by blocksize");
2059a8c6a408SBarry Smith   }
206079bdfe76SSatish Balay 
206179bdfe76SSatish Balay   b->m = m; B->m = m;
206279bdfe76SSatish Balay   b->n = n; B->n = n;
206379bdfe76SSatish Balay   b->N = N; B->N = N;
206479bdfe76SSatish Balay   b->M = M; B->M = M;
206579bdfe76SSatish Balay   b->bs  = bs;
206679bdfe76SSatish Balay   b->bs2 = bs*bs;
206779bdfe76SSatish Balay   b->mbs = mbs;
206879bdfe76SSatish Balay   b->nbs = nbs;
206979bdfe76SSatish Balay   b->Mbs = Mbs;
207079bdfe76SSatish Balay   b->Nbs = Nbs;
207179bdfe76SSatish Balay 
2072c7fcc2eaSBarry Smith   /* the information in the maps duplicates the information computed below, eventually
2073c7fcc2eaSBarry Smith      we should remove the duplicate information that is not contained in the maps */
2074488ecbafSBarry Smith   ierr = MapCreateMPI(comm,m,M,&B->rmap);CHKERRQ(ierr);
2075488ecbafSBarry Smith   ierr = MapCreateMPI(comm,n,N,&B->cmap);CHKERRQ(ierr);
2076c7fcc2eaSBarry Smith 
207779bdfe76SSatish Balay   /* build local table of row and column ownerships */
2078ff2fd236SBarry Smith   b->rowners = (int *) PetscMalloc(3*(b->size+2)*sizeof(int));CHKPTRQ(b->rowners);
2079ff2fd236SBarry Smith   PLogObjectMemory(B,3*(b->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
20800ac07820SSatish Balay   b->cowners    = b->rowners + b->size + 2;
2081ff2fd236SBarry Smith   b->rowners_bs = b->cowners + b->size + 2;
2082ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,b->rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
208379bdfe76SSatish Balay   b->rowners[0]    = 0;
208479bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
208579bdfe76SSatish Balay     b->rowners[i] += b->rowners[i-1];
208679bdfe76SSatish Balay   }
2087ff2fd236SBarry Smith   for ( i=0; i<=b->size; i++ ) {
2088ff2fd236SBarry Smith     b->rowners_bs[i] = b->rowners[i]*bs;
2089ff2fd236SBarry Smith   }
209079bdfe76SSatish Balay   b->rstart    = b->rowners[b->rank];
209179bdfe76SSatish Balay   b->rend      = b->rowners[b->rank+1];
20924fa0d573SSatish Balay   b->rstart_bs = b->rstart * bs;
20934fa0d573SSatish Balay   b->rend_bs   = b->rend * bs;
20944fa0d573SSatish Balay 
2095ca161407SBarry Smith   ierr = MPI_Allgather(&nbs,1,MPI_INT,b->cowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
209679bdfe76SSatish Balay   b->cowners[0] = 0;
209779bdfe76SSatish Balay   for ( i=2; i<=b->size; i++ ) {
209879bdfe76SSatish Balay     b->cowners[i] += b->cowners[i-1];
209979bdfe76SSatish Balay   }
210079bdfe76SSatish Balay   b->cstart    = b->cowners[b->rank];
210179bdfe76SSatish Balay   b->cend      = b->cowners[b->rank+1];
21024fa0d573SSatish Balay   b->cstart_bs = b->cstart * bs;
21034fa0d573SSatish Balay   b->cend_bs   = b->cend * bs;
210479bdfe76SSatish Balay 
2105a07cd24cSSatish Balay 
210679bdfe76SSatish Balay   if (d_nz == PETSC_DEFAULT) d_nz = 5;
2107029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,n,d_nz,d_nnz,&b->A);CHKERRQ(ierr);
210879bdfe76SSatish Balay   PLogObjectParent(B,b->A);
210979bdfe76SSatish Balay   if (o_nz == PETSC_DEFAULT) o_nz = 0;
2110029af93fSBarry Smith   ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,bs,m,N,o_nz,o_nnz,&b->B);CHKERRQ(ierr);
211179bdfe76SSatish Balay   PLogObjectParent(B,b->B);
211279bdfe76SSatish Balay 
211379bdfe76SSatish Balay   /* build cache for off array entries formed */
21148798bf22SSatish Balay   ierr = MatStashCreate_Private(comm,1,&B->stash);CHKERRQ(ierr);
21158798bf22SSatish Balay   ierr = MatStashCreate_Private(comm,bs,&B->bstash);CHKERRQ(ierr);
211690f02eecSBarry Smith   b->donotstash  = 0;
211779bdfe76SSatish Balay   b->colmap      = 0;
211879bdfe76SSatish Balay   b->garray      = 0;
211979bdfe76SSatish Balay   b->roworiented = 1;
212079bdfe76SSatish Balay 
212130793edcSSatish Balay   /* stuff used in block assembly */
212230793edcSSatish Balay   b->barray       = 0;
212330793edcSSatish Balay 
212479bdfe76SSatish Balay   /* stuff used for matrix vector multiply */
212579bdfe76SSatish Balay   b->lvec         = 0;
212679bdfe76SSatish Balay   b->Mvctx        = 0;
212779bdfe76SSatish Balay 
212879bdfe76SSatish Balay   /* stuff for MatGetRow() */
212979bdfe76SSatish Balay   b->rowindices   = 0;
213079bdfe76SSatish Balay   b->rowvalues    = 0;
213179bdfe76SSatish Balay   b->getrowactive = PETSC_FALSE;
213279bdfe76SSatish Balay 
2133a07cd24cSSatish Balay   /* hash table stuff */
2134a07cd24cSSatish Balay   b->ht           = 0;
2135187ce0cbSSatish Balay   b->hd           = 0;
21360bdbc534SSatish Balay   b->ht_size      = 0;
2137133cdb44SSatish Balay   b->ht_flag      = 0;
213825fdafccSSatish Balay   b->ht_fact      = 0;
2139187ce0cbSSatish Balay   b->ht_total_ct  = 0;
2140187ce0cbSSatish Balay   b->ht_insert_ct = 0;
2141a07cd24cSSatish Balay 
214279bdfe76SSatish Balay   *A = B;
2143133cdb44SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-mat_use_hash_table",&flg);CHKERRQ(ierr);
2144133cdb44SSatish Balay   if (flg) {
2145133cdb44SSatish Balay     double fact = 1.39;
2146133cdb44SSatish Balay     ierr = MatSetOption(B,MAT_USE_HASH_TABLE);CHKERRQ(ierr);
2147133cdb44SSatish Balay     ierr = OptionsGetDouble(PETSC_NULL,"-mat_use_hash_table",&fact,&flg);CHKERRQ(ierr);
2148133cdb44SSatish Balay     if (fact <= 1.0) fact = 1.39;
2149133cdb44SSatish Balay     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
2150133cdb44SSatish Balay     PLogInfo(0,"MatCreateMPIBAIJ:Hash table Factor used %5.2f\n",fact);
2151133cdb44SSatish Balay   }
21527fc3c18eSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",
21537fc3c18eSBarry Smith                                      "MatStoreValues_MPIBAIJ",
21547fc3c18eSBarry Smith                                      (void*)MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
21557fc3c18eSBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",
21567fc3c18eSBarry Smith                                      "MatRetrieveValues_MPIBAIJ",
21577fc3c18eSBarry Smith                                      (void*)MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
21585ef9f2a5SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",
21595ef9f2a5SBarry Smith                                      "MatGetDiagonalBlock_MPIBAIJ",
21605ef9f2a5SBarry Smith                                      (void*)MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
21613a40ed3dSBarry Smith   PetscFunctionReturn(0);
216279bdfe76SSatish Balay }
2163026e39d0SSatish Balay 
21645615d1e5SSatish Balay #undef __FUNC__
21652e8a6d31SBarry Smith #define __FUNC__ "MatDuplicate_MPIBAIJ"
21662e8a6d31SBarry Smith static int MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
21670ac07820SSatish Balay {
21680ac07820SSatish Balay   Mat         mat;
21690ac07820SSatish Balay   Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ *) matin->data;
21700ac07820SSatish Balay   int         ierr, len=0, flg;
21710ac07820SSatish Balay 
2172d64ed03dSBarry Smith   PetscFunctionBegin;
21730ac07820SSatish Balay   *newmat       = 0;
21743f1db9ecSBarry Smith   PetscHeaderCreate(mat,_p_Mat,struct _MatOps,MAT_COOKIE,MATMPIBAIJ,"Mat",matin->comm,MatDestroy,MatView);
21750ac07820SSatish Balay   PLogObjectCreate(mat);
21760ac07820SSatish Balay   mat->data         = (void *) (a = PetscNew(Mat_MPIBAIJ));CHKPTRQ(a);
2177549d3d68SSatish Balay   ierr              = PetscMemcpy(mat->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
2178e1311b90SBarry Smith   mat->ops->destroy = MatDestroy_MPIBAIJ;
2179e1311b90SBarry Smith   mat->ops->view    = MatView_MPIBAIJ;
21800ac07820SSatish Balay   mat->factor       = matin->factor;
21810ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
2182aef5e8e0SSatish Balay   mat->insertmode   = NOT_SET_VALUES;
21830ac07820SSatish Balay 
21840ac07820SSatish Balay   a->m = mat->m   = oldmat->m;
21850ac07820SSatish Balay   a->n = mat->n   = oldmat->n;
21860ac07820SSatish Balay   a->M = mat->M   = oldmat->M;
21870ac07820SSatish Balay   a->N = mat->N   = oldmat->N;
21880ac07820SSatish Balay 
21890ac07820SSatish Balay   a->bs  = oldmat->bs;
21900ac07820SSatish Balay   a->bs2 = oldmat->bs2;
21910ac07820SSatish Balay   a->mbs = oldmat->mbs;
21920ac07820SSatish Balay   a->nbs = oldmat->nbs;
21930ac07820SSatish Balay   a->Mbs = oldmat->Mbs;
21940ac07820SSatish Balay   a->Nbs = oldmat->Nbs;
21950ac07820SSatish Balay 
21960ac07820SSatish Balay   a->rstart       = oldmat->rstart;
21970ac07820SSatish Balay   a->rend         = oldmat->rend;
21980ac07820SSatish Balay   a->cstart       = oldmat->cstart;
21990ac07820SSatish Balay   a->cend         = oldmat->cend;
22000ac07820SSatish Balay   a->size         = oldmat->size;
22010ac07820SSatish Balay   a->rank         = oldmat->rank;
2202aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
2203aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
2204aef5e8e0SSatish Balay   a->rowindices   = 0;
22050ac07820SSatish Balay   a->rowvalues    = 0;
22060ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
220730793edcSSatish Balay   a->barray       = 0;
22083123a43fSSatish Balay   a->rstart_bs    = oldmat->rstart_bs;
22093123a43fSSatish Balay   a->rend_bs      = oldmat->rend_bs;
22103123a43fSSatish Balay   a->cstart_bs    = oldmat->cstart_bs;
22113123a43fSSatish Balay   a->cend_bs      = oldmat->cend_bs;
22120ac07820SSatish Balay 
2213133cdb44SSatish Balay   /* hash table stuff */
2214133cdb44SSatish Balay   a->ht           = 0;
2215133cdb44SSatish Balay   a->hd           = 0;
2216133cdb44SSatish Balay   a->ht_size      = 0;
2217133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
221825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
2219133cdb44SSatish Balay   a->ht_total_ct  = 0;
2220133cdb44SSatish Balay   a->ht_insert_ct = 0;
2221133cdb44SSatish Balay 
2222133cdb44SSatish Balay 
2223ff2fd236SBarry Smith   a->rowners = (int *) PetscMalloc(3*(a->size+2)*sizeof(int));CHKPTRQ(a->rowners);
2224ff2fd236SBarry Smith   PLogObjectMemory(mat,3*(a->size+2)*sizeof(int)+sizeof(struct _p_Mat)+sizeof(Mat_MPIBAIJ));
22250ac07820SSatish Balay   a->cowners    = a->rowners + a->size + 2;
2226ff2fd236SBarry Smith   a->rowners_bs = a->cowners + a->size + 2;
2227549d3d68SSatish Balay   ierr = PetscMemcpy(a->rowners,oldmat->rowners,3*(a->size+2)*sizeof(int));CHKERRQ(ierr);
22288798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,1,&mat->stash);CHKERRQ(ierr);
22298798bf22SSatish Balay   ierr = MatStashCreate_Private(matin->comm,oldmat->bs,&mat->bstash);CHKERRQ(ierr);
22300ac07820SSatish Balay   if (oldmat->colmap) {
2231aa482453SBarry Smith #if defined (PETSC_USE_CTABLE)
2232fa46199cSSatish Balay   ierr = TableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
223348e59246SSatish Balay #else
22340ac07820SSatish Balay     a->colmap = (int *) PetscMalloc((a->Nbs)*sizeof(int));CHKPTRQ(a->colmap);
22350ac07820SSatish Balay     PLogObjectMemory(mat,(a->Nbs)*sizeof(int));
2236549d3d68SSatish Balay     ierr      = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(int));CHKERRQ(ierr);
223748e59246SSatish Balay #endif
22380ac07820SSatish Balay   } else a->colmap = 0;
22390ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *) (oldmat->B->data))->nbs)) {
22400ac07820SSatish Balay     a->garray = (int *) PetscMalloc(len*sizeof(int));CHKPTRQ(a->garray);
22410ac07820SSatish Balay     PLogObjectMemory(mat,len*sizeof(int));
2242549d3d68SSatish Balay     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(int));CHKERRQ(ierr);
22430ac07820SSatish Balay   } else a->garray = 0;
22440ac07820SSatish Balay 
22450ac07820SSatish Balay   ierr =  VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
22460ac07820SSatish Balay   PLogObjectParent(mat,a->lvec);
22470ac07820SSatish Balay   ierr =  VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
2248e18c124aSSatish Balay 
22490ac07820SSatish Balay   PLogObjectParent(mat,a->Mvctx);
22502e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
22510ac07820SSatish Balay   PLogObjectParent(mat,a->A);
22522e8a6d31SBarry Smith   ierr =  MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
22530ac07820SSatish Balay   PLogObjectParent(mat,a->B);
22540ac07820SSatish Balay   ierr = OptionsHasName(PETSC_NULL,"-help",&flg);CHKERRQ(ierr);
2255e18c124aSSatish Balay   ierr = FListDuplicate(mat->qlist,&matin->qlist);CHKERRQ(ierr);
22560ac07820SSatish Balay   if (flg) {
22570ac07820SSatish Balay     ierr = MatPrintHelp(mat);CHKERRQ(ierr);
22580ac07820SSatish Balay   }
22590ac07820SSatish Balay   *newmat = mat;
22603a40ed3dSBarry Smith   PetscFunctionReturn(0);
22610ac07820SSatish Balay }
226257b952d6SSatish Balay 
226357b952d6SSatish Balay #include "sys.h"
226457b952d6SSatish Balay 
22655615d1e5SSatish Balay #undef __FUNC__
22665615d1e5SSatish Balay #define __FUNC__ "MatLoad_MPIBAIJ"
226757b952d6SSatish Balay int MatLoad_MPIBAIJ(Viewer viewer,MatType type,Mat *newmat)
226857b952d6SSatish Balay {
226957b952d6SSatish Balay   Mat          A;
227057b952d6SSatish Balay   int          i, nz, ierr, j,rstart, rend, fd;
227157b952d6SSatish Balay   Scalar       *vals,*buf;
227257b952d6SSatish Balay   MPI_Comm     comm = ((PetscObject)viewer)->comm;
227357b952d6SSatish Balay   MPI_Status   status;
2274cee3aa6bSSatish Balay   int          header[4],rank,size,*rowlengths = 0,M,N,m,*rowners,*browners,maxnz,*cols;
227557b952d6SSatish Balay   int          *locrowlens,*sndcounts = 0,*procsnz = 0, jj,*mycols,*ibuf;
227640011551SBarry Smith   int          flg,tag = ((PetscObject)viewer)->tag,bs=1,Mbs,mbs,extra_rows;
227757b952d6SSatish Balay   int          *dlens,*odlens,*mask,*masked1,*masked2,rowcount,odcount;
227857b952d6SSatish Balay   int          dcount,kmax,k,nzcount,tmp;
227957b952d6SSatish Balay 
2280d64ed03dSBarry Smith   PetscFunctionBegin;
228157b952d6SSatish Balay   ierr = OptionsGetInt(PETSC_NULL,"-matload_block_size",&bs,&flg);CHKERRQ(ierr);
228257b952d6SSatish Balay 
2283d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
2284d132466eSBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
228557b952d6SSatish Balay   if (!rank) {
228657b952d6SSatish Balay     ierr = ViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
2287e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,(char *)header,4,PETSC_INT);CHKERRQ(ierr);
2288a8c6a408SBarry Smith     if (header[0] != MAT_COOKIE) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"not matrix object");
2289d64ed03dSBarry Smith     if (header[3] < 0) {
2290a8c6a408SBarry Smith       SETERRQ(PETSC_ERR_FILE_UNEXPECTED,1,"Matrix stored in special format, cannot load as MPIBAIJ");
2291d64ed03dSBarry Smith     }
22926c5fab8fSBarry Smith   }
2293d64ed03dSBarry Smith 
2294ca161407SBarry Smith   ierr = MPI_Bcast(header+1,3,MPI_INT,0,comm);CHKERRQ(ierr);
229557b952d6SSatish Balay   M = header[1]; N = header[2];
229657b952d6SSatish Balay 
2297a8c6a408SBarry Smith   if (M != N) SETERRQ(PETSC_ERR_SUP,0,"Can only do square matrices");
229857b952d6SSatish Balay 
229957b952d6SSatish Balay   /*
230057b952d6SSatish Balay      This code adds extra rows to make sure the number of rows is
230157b952d6SSatish Balay      divisible by the blocksize
230257b952d6SSatish Balay   */
230357b952d6SSatish Balay   Mbs        = M/bs;
230457b952d6SSatish Balay   extra_rows = bs - M + bs*(Mbs);
230557b952d6SSatish Balay   if (extra_rows == bs) extra_rows = 0;
230657b952d6SSatish Balay   else                  Mbs++;
230757b952d6SSatish Balay   if (extra_rows &&!rank) {
2308b0267e0aSLois Curfman McInnes     PLogInfo(0,"MatLoad_MPIBAIJ:Padding loaded matrix to match blocksize\n");
230957b952d6SSatish Balay   }
2310537820f0SBarry Smith 
231157b952d6SSatish Balay   /* determine ownership of all rows */
231257b952d6SSatish Balay   mbs = Mbs/size + ((Mbs % size) > rank);
231357b952d6SSatish Balay   m   = mbs * bs;
2314cee3aa6bSSatish Balay   rowners = (int *) PetscMalloc(2*(size+2)*sizeof(int));CHKPTRQ(rowners);
2315cee3aa6bSSatish Balay   browners = rowners + size + 1;
2316ca161407SBarry Smith   ierr = MPI_Allgather(&mbs,1,MPI_INT,rowners+1,1,MPI_INT,comm);CHKERRQ(ierr);
231757b952d6SSatish Balay   rowners[0] = 0;
2318cee3aa6bSSatish Balay   for ( i=2; i<=size; i++ ) rowners[i] += rowners[i-1];
2319cee3aa6bSSatish Balay   for ( i=0; i<=size;  i++ ) browners[i] = rowners[i]*bs;
232057b952d6SSatish Balay   rstart = rowners[rank];
232157b952d6SSatish Balay   rend   = rowners[rank+1];
232257b952d6SSatish Balay 
232357b952d6SSatish Balay   /* distribute row lengths to all processors */
232457b952d6SSatish Balay   locrowlens = (int*) PetscMalloc( (rend-rstart)*bs*sizeof(int) );CHKPTRQ(locrowlens);
232557b952d6SSatish Balay   if (!rank) {
232657b952d6SSatish Balay     rowlengths = (int*) PetscMalloc( (M+extra_rows)*sizeof(int) );CHKPTRQ(rowlengths);
2327e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,rowlengths,M,PETSC_INT);CHKERRQ(ierr);
232857b952d6SSatish Balay     for ( i=0; i<extra_rows; i++ ) rowlengths[M+i] = 1;
232957b952d6SSatish Balay     sndcounts = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(sndcounts);
2330cee3aa6bSSatish Balay     for ( i=0; i<size; i++ ) sndcounts[i] = browners[i+1] - browners[i];
2331ca161407SBarry Smith     ierr = MPI_Scatterv(rowlengths,sndcounts,browners,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT,0,comm);CHKERRQ(ierr);
2332606d414cSSatish Balay     ierr = PetscFree(sndcounts);CHKERRQ(ierr);
2333d64ed03dSBarry Smith   } else {
2334ca161407SBarry Smith     ierr = MPI_Scatterv(0,0,0,MPI_INT,locrowlens,(rend-rstart)*bs,MPI_INT, 0,comm);CHKERRQ(ierr);
233557b952d6SSatish Balay   }
233657b952d6SSatish Balay 
233757b952d6SSatish Balay   if (!rank) {
233857b952d6SSatish Balay     /* calculate the number of nonzeros on each processor */
233957b952d6SSatish Balay     procsnz = (int*) PetscMalloc( size*sizeof(int) );CHKPTRQ(procsnz);
2340549d3d68SSatish Balay     ierr    = PetscMemzero(procsnz,size*sizeof(int));CHKERRQ(ierr);
234157b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
234257b952d6SSatish Balay       for ( j=rowners[i]*bs; j< rowners[i+1]*bs; j++ ) {
234357b952d6SSatish Balay         procsnz[i] += rowlengths[j];
234457b952d6SSatish Balay       }
234557b952d6SSatish Balay     }
2346606d414cSSatish Balay     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
234757b952d6SSatish Balay 
234857b952d6SSatish Balay     /* determine max buffer needed and allocate it */
234957b952d6SSatish Balay     maxnz = 0;
235057b952d6SSatish Balay     for ( i=0; i<size; i++ ) {
235157b952d6SSatish Balay       maxnz = PetscMax(maxnz,procsnz[i]);
235257b952d6SSatish Balay     }
235357b952d6SSatish Balay     cols = (int *) PetscMalloc( maxnz*sizeof(int) );CHKPTRQ(cols);
235457b952d6SSatish Balay 
235557b952d6SSatish Balay     /* read in my part of the matrix column indices  */
235657b952d6SSatish Balay     nz = procsnz[0];
235757b952d6SSatish Balay     ibuf = (int *) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf);
235857b952d6SSatish Balay     mycols = ibuf;
2359cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2360e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
2361cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { mycols[nz+i] = M+i; }
2362cee3aa6bSSatish Balay 
236357b952d6SSatish Balay     /* read in every ones (except the last) and ship off */
236457b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
236557b952d6SSatish Balay       nz   = procsnz[i];
2366e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
2367ca161407SBarry Smith       ierr = MPI_Send(cols,nz,MPI_INT,i,tag,comm);CHKERRQ(ierr);
236857b952d6SSatish Balay     }
236957b952d6SSatish Balay     /* read in the stuff for the last proc */
237057b952d6SSatish Balay     if ( size != 1 ) {
237157b952d6SSatish Balay       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
2372e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
237357b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) cols[nz+i] = M+i;
2374ca161407SBarry Smith       ierr = MPI_Send(cols,nz+extra_rows,MPI_INT,size-1,tag,comm);CHKERRQ(ierr);
237557b952d6SSatish Balay     }
2376606d414cSSatish Balay     ierr = PetscFree(cols);CHKERRQ(ierr);
2377d64ed03dSBarry Smith   } else {
237857b952d6SSatish Balay     /* determine buffer space needed for message */
237957b952d6SSatish Balay     nz = 0;
238057b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
238157b952d6SSatish Balay       nz += locrowlens[i];
238257b952d6SSatish Balay     }
238357b952d6SSatish Balay     ibuf   = (int*) PetscMalloc( nz*sizeof(int) );CHKPTRQ(ibuf);
238457b952d6SSatish Balay     mycols = ibuf;
238557b952d6SSatish Balay     /* receive message of column indices*/
2386ca161407SBarry Smith     ierr = MPI_Recv(mycols,nz,MPI_INT,0,tag,comm,&status);CHKERRQ(ierr);
2387ca161407SBarry Smith     ierr = MPI_Get_count(&status,MPI_INT,&maxnz);CHKERRQ(ierr);
2388a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
238957b952d6SSatish Balay   }
239057b952d6SSatish Balay 
239157b952d6SSatish Balay   /* loop over local rows, determining number of off diagonal entries */
2392cee3aa6bSSatish Balay   dlens  = (int *) PetscMalloc( 2*(rend-rstart+1)*sizeof(int) );CHKPTRQ(dlens);
2393cee3aa6bSSatish Balay   odlens = dlens + (rend-rstart);
239457b952d6SSatish Balay   mask   = (int *) PetscMalloc( 3*Mbs*sizeof(int) );CHKPTRQ(mask);
2395549d3d68SSatish Balay   ierr   = PetscMemzero(mask,3*Mbs*sizeof(int));CHKERRQ(ierr);
239657b952d6SSatish Balay   masked1 = mask    + Mbs;
239757b952d6SSatish Balay   masked2 = masked1 + Mbs;
239857b952d6SSatish Balay   rowcount = 0; nzcount = 0;
239957b952d6SSatish Balay   for ( i=0; i<mbs; i++ ) {
240057b952d6SSatish Balay     dcount  = 0;
240157b952d6SSatish Balay     odcount = 0;
240257b952d6SSatish Balay     for ( j=0; j<bs; j++ ) {
240357b952d6SSatish Balay       kmax = locrowlens[rowcount];
240457b952d6SSatish Balay       for ( k=0; k<kmax; k++ ) {
240557b952d6SSatish Balay         tmp = mycols[nzcount++]/bs;
240657b952d6SSatish Balay         if (!mask[tmp]) {
240757b952d6SSatish Balay           mask[tmp] = 1;
240857b952d6SSatish Balay           if (tmp < rstart || tmp >= rend ) masked2[odcount++] = tmp;
240957b952d6SSatish Balay           else masked1[dcount++] = tmp;
241057b952d6SSatish Balay         }
241157b952d6SSatish Balay       }
241257b952d6SSatish Balay       rowcount++;
241357b952d6SSatish Balay     }
2414cee3aa6bSSatish Balay 
241557b952d6SSatish Balay     dlens[i]  = dcount;
241657b952d6SSatish Balay     odlens[i] = odcount;
2417cee3aa6bSSatish Balay 
241857b952d6SSatish Balay     /* zero out the mask elements we set */
241957b952d6SSatish Balay     for ( j=0; j<dcount; j++ ) mask[masked1[j]] = 0;
242057b952d6SSatish Balay     for ( j=0; j<odcount; j++ ) mask[masked2[j]] = 0;
242157b952d6SSatish Balay   }
2422cee3aa6bSSatish Balay 
242357b952d6SSatish Balay   /* create our matrix */
2424549d3d68SSatish Balay   ierr = MatCreateMPIBAIJ(comm,bs,m,PETSC_DECIDE,M+extra_rows,N+extra_rows,0,dlens,0,odlens,newmat);CHKERRQ(ierr);
242557b952d6SSatish Balay   A = *newmat;
24266d4a8577SBarry Smith   MatSetOption(A,MAT_COLUMNS_SORTED);
242757b952d6SSatish Balay 
242857b952d6SSatish Balay   if (!rank) {
242957b952d6SSatish Balay     buf = (Scalar *) PetscMalloc( maxnz*sizeof(Scalar) );CHKPTRQ(buf);
243057b952d6SSatish Balay     /* read in my part of the matrix numerical values  */
243157b952d6SSatish Balay     nz = procsnz[0];
243257b952d6SSatish Balay     vals = buf;
2433cee3aa6bSSatish Balay     mycols = ibuf;
2434cee3aa6bSSatish Balay     if (size == 1)  nz -= extra_rows;
2435e5638eb3SBarry Smith     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2436cee3aa6bSSatish Balay     if (size == 1)  for (i=0; i< extra_rows; i++) { vals[nz+i] = 1.0; }
2437537820f0SBarry Smith 
243857b952d6SSatish Balay     /* insert into matrix */
243957b952d6SSatish Balay     jj      = rstart*bs;
244057b952d6SSatish Balay     for ( i=0; i<m; i++ ) {
244157b952d6SSatish Balay       ierr = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
244257b952d6SSatish Balay       mycols += locrowlens[i];
244357b952d6SSatish Balay       vals   += locrowlens[i];
244457b952d6SSatish Balay       jj++;
244557b952d6SSatish Balay     }
244657b952d6SSatish Balay     /* read in other processors (except the last one) and ship out */
244757b952d6SSatish Balay     for ( i=1; i<size-1; i++ ) {
244857b952d6SSatish Balay       nz   = procsnz[i];
244957b952d6SSatish Balay       vals = buf;
2450e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
2451ca161407SBarry Smith       ierr = MPI_Send(vals,nz,MPIU_SCALAR,i,A->tag,comm);CHKERRQ(ierr);
245257b952d6SSatish Balay     }
245357b952d6SSatish Balay     /* the last proc */
245457b952d6SSatish Balay     if ( size != 1 ){
245557b952d6SSatish Balay       nz   = procsnz[i] - extra_rows;
2456cee3aa6bSSatish Balay       vals = buf;
2457e5638eb3SBarry Smith       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
245857b952d6SSatish Balay       for ( i=0; i<extra_rows; i++ ) vals[nz+i] = 1.0;
2459ca161407SBarry Smith       ierr = MPI_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,A->tag,comm);CHKERRQ(ierr);
246057b952d6SSatish Balay     }
2461606d414cSSatish Balay     ierr = PetscFree(procsnz);CHKERRQ(ierr);
2462d64ed03dSBarry Smith   } else {
246357b952d6SSatish Balay     /* receive numeric values */
246457b952d6SSatish Balay     buf = (Scalar*) PetscMalloc( nz*sizeof(Scalar) );CHKPTRQ(buf);
246557b952d6SSatish Balay 
246657b952d6SSatish Balay     /* receive message of values*/
246757b952d6SSatish Balay     vals   = buf;
2468cee3aa6bSSatish Balay     mycols = ibuf;
2469ca161407SBarry Smith     ierr   = MPI_Recv(vals,nz,MPIU_SCALAR,0,A->tag,comm,&status);CHKERRQ(ierr);
2470ca161407SBarry Smith     ierr   = MPI_Get_count(&status,MPIU_SCALAR,&maxnz);CHKERRQ(ierr);
2471a8c6a408SBarry Smith     if (maxnz != nz) SETERRQ(PETSC_ERR_FILE_UNEXPECTED,0,"something is wrong with file");
247257b952d6SSatish Balay 
247357b952d6SSatish Balay     /* insert into matrix */
247457b952d6SSatish Balay     jj      = rstart*bs;
2475cee3aa6bSSatish Balay     for ( i=0; i<m; i++ ) {
247657b952d6SSatish Balay       ierr    = MatSetValues(A,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
247757b952d6SSatish Balay       mycols += locrowlens[i];
247857b952d6SSatish Balay       vals   += locrowlens[i];
247957b952d6SSatish Balay       jj++;
248057b952d6SSatish Balay     }
248157b952d6SSatish Balay   }
2482606d414cSSatish Balay   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
2483606d414cSSatish Balay   ierr = PetscFree(buf);CHKERRQ(ierr);
2484606d414cSSatish Balay   ierr = PetscFree(ibuf);CHKERRQ(ierr);
2485606d414cSSatish Balay   ierr = PetscFree(rowners);CHKERRQ(ierr);
2486606d414cSSatish Balay   ierr = PetscFree(dlens);CHKERRQ(ierr);
2487606d414cSSatish Balay   ierr = PetscFree(mask);CHKERRQ(ierr);
24886d4a8577SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24896d4a8577SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
24903a40ed3dSBarry Smith   PetscFunctionReturn(0);
249157b952d6SSatish Balay }
249257b952d6SSatish Balay 
2493133cdb44SSatish Balay #undef __FUNC__
2494133cdb44SSatish Balay #define __FUNC__ "MatMPIBAIJSetHashTableFactor"
2495133cdb44SSatish Balay /*@
2496133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
2497133cdb44SSatish Balay 
2498133cdb44SSatish Balay    Input Parameters:
2499133cdb44SSatish Balay .  mat  - the matrix
2500133cdb44SSatish Balay .  fact - factor
2501133cdb44SSatish Balay 
2502fee21e36SBarry Smith    Collective on Mat
2503fee21e36SBarry Smith 
25048c890885SBarry Smith    Level: advanced
25058c890885SBarry Smith 
2506133cdb44SSatish Balay   Notes:
2507133cdb44SSatish Balay    This can also be set by the command line option: -mat_use_hash_table fact
2508133cdb44SSatish Balay 
2509133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
2510133cdb44SSatish Balay 
2511133cdb44SSatish Balay .seealso: MatSetOption()
2512133cdb44SSatish Balay @*/
2513133cdb44SSatish Balay int MatMPIBAIJSetHashTableFactor(Mat mat,double fact)
2514133cdb44SSatish Balay {
251525fdafccSSatish Balay   Mat_MPIBAIJ *baij;
2516133cdb44SSatish Balay 
2517133cdb44SSatish Balay   PetscFunctionBegin;
2518133cdb44SSatish Balay   PetscValidHeaderSpecific(mat,MAT_COOKIE);
251925fdafccSSatish Balay   if (mat->type != MATMPIBAIJ) {
2520133cdb44SSatish Balay       SETERRQ(PETSC_ERR_ARG_WRONG,1,"Incorrect matrix type. Use MPIBAIJ only.");
2521133cdb44SSatish Balay   }
2522133cdb44SSatish Balay   baij = (Mat_MPIBAIJ*) mat->data;
2523133cdb44SSatish Balay   baij->ht_fact = fact;
2524133cdb44SSatish Balay   PetscFunctionReturn(0);
2525133cdb44SSatish Balay }
2526