179bdfe76SSatish Balay 2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 3c5d9258eSSatish Balay 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 74a2ae208SSatish Balay #undef __FUNCT__ 8985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ" 9985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[]) 107843d17aSBarry Smith { 117843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 12dfbe8321SBarry Smith PetscErrorCode ierr; 13985db425SBarry Smith PetscInt i,*idxb = 0; 1487828ca2SBarry Smith PetscScalar *va,*vb; 157843d17aSBarry Smith Vec vtmp; 167843d17aSBarry Smith 177843d17aSBarry Smith PetscFunctionBegin; 18985db425SBarry Smith ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr); 191ebc52fbSHong Zhang ierr = VecGetArray(v,&va);CHKERRQ(ierr); 20985db425SBarry Smith if (idx) { 2126fbe8dcSKarl Rupp for (i=0; i<A->rmap->n; i++) { 2226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2326fbe8dcSKarl Rupp } 24985db425SBarry Smith } 257843d17aSBarry Smith 26d0f46423SBarry Smith ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr); 27785e854fSJed Brown if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);} 28985db425SBarry Smith ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr); 291ebc52fbSHong Zhang ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr); 307843d17aSBarry Smith 31d0f46423SBarry Smith for (i=0; i<A->rmap->n; i++) { 3226fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 3326fbe8dcSKarl Rupp va[i] = vb[i]; 3426fbe8dcSKarl Rupp if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs); 3526fbe8dcSKarl Rupp } 367843d17aSBarry Smith } 377843d17aSBarry Smith 381ebc52fbSHong Zhang ierr = VecRestoreArray(v,&va);CHKERRQ(ierr); 391ebc52fbSHong Zhang ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr); 40c31cb41cSBarry Smith ierr = PetscFree(idxb);CHKERRQ(ierr); 416bf464f9SBarry Smith ierr = VecDestroy(&vtmp);CHKERRQ(ierr); 427843d17aSBarry Smith PetscFunctionReturn(0); 437843d17aSBarry Smith } 447843d17aSBarry Smith 454a2ae208SSatish Balay #undef __FUNCT__ 464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ" 477087cfbeSBarry Smith PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) 487fc3c18eSBarry Smith { 497fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 50dfbe8321SBarry Smith PetscErrorCode ierr; 517fc3c18eSBarry Smith 527fc3c18eSBarry Smith PetscFunctionBegin; 537fc3c18eSBarry Smith ierr = MatStoreValues(aij->A);CHKERRQ(ierr); 547fc3c18eSBarry Smith ierr = MatStoreValues(aij->B);CHKERRQ(ierr); 557fc3c18eSBarry Smith PetscFunctionReturn(0); 567fc3c18eSBarry Smith } 577fc3c18eSBarry Smith 584a2ae208SSatish Balay #undef __FUNCT__ 594a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ" 607087cfbeSBarry Smith PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) 617fc3c18eSBarry Smith { 627fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)mat->data; 63dfbe8321SBarry Smith PetscErrorCode ierr; 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith PetscFunctionBegin; 667fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr); 677fc3c18eSBarry Smith ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr); 687fc3c18eSBarry Smith PetscFunctionReturn(0); 697fc3c18eSBarry Smith } 707fc3c18eSBarry Smith 71537820f0SBarry Smith /* 72537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7357b952d6SSatish Balay number to the local number in the off-diagonal part of the local 74e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7557b952d6SSatish Balay length of colmap equals the global matrix length. 7657b952d6SSatish Balay */ 774a2ae208SSatish Balay #undef __FUNCT__ 78ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private" 79ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) 8057b952d6SSatish Balay { 8157b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 8257b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 836849ba73SBarry Smith PetscErrorCode ierr; 84d0f46423SBarry Smith PetscInt nbs = B->nbs,i,bs=mat->rmap->bs; 8557b952d6SSatish Balay 86d64ed03dSBarry Smith PetscFunctionBegin; 87aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 88e23dfa41SBarry Smith ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 8948e59246SSatish Balay for (i=0; i<nbs; i++) { 903861aac3SJed Brown ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr); 9148e59246SSatish Balay } 9248e59246SSatish Balay #else 93854ce69bSBarry Smith ierr = PetscMalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr); 943bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 95b24ad042SBarry Smith ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr); 96928fc39bSSatish Balay for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1; 9748e59246SSatish Balay #endif 983a40ed3dSBarry Smith PetscFunctionReturn(0); 9957b952d6SSatish Balay } 10057b952d6SSatish Balay 101d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol) \ 10280c1aa95SSatish Balay { \ 10380c1aa95SSatish Balay \ 10480c1aa95SSatish Balay brow = row/bs; \ 10580c1aa95SSatish Balay rp = aj + ai[brow]; ap = aa + bs2*ai[brow]; \ 106ac7a638eSSatish Balay rmax = aimax[brow]; nrow = ailen[brow]; \ 10780c1aa95SSatish Balay bcol = col/bs; \ 10880c1aa95SSatish Balay ridx = row % bs; cidx = col % bs; \ 109ab26458aSBarry Smith low = 0; high = nrow; \ 110ab26458aSBarry Smith while (high-low > 3) { \ 111ab26458aSBarry Smith t = (low+high)/2; \ 112ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 113ab26458aSBarry Smith else low = t; \ 114ab26458aSBarry Smith } \ 115ab26458aSBarry Smith for (_i=low; _i<high; _i++) { \ 11680c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11780c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11880c1aa95SSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 119eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 120eada6651SSatish Balay else *bap = value; \ 121ac7a638eSSatish Balay goto a_noinsert; \ 12280c1aa95SSatish Balay } \ 12380c1aa95SSatish Balay } \ 12489280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 125d40312a9SBarry Smith if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 126fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \ 12780c1aa95SSatish Balay N = nrow++ - 1; \ 12880c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 12980c1aa95SSatish Balay for (ii=N; ii>=_i; ii--) { \ 13080c1aa95SSatish Balay rp[ii+1] = rp[ii]; \ 1313eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 13280c1aa95SSatish Balay } \ 1333eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); } \ 13480c1aa95SSatish Balay rp[_i] = bcol; \ 13580c1aa95SSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 136ac7a638eSSatish Balay a_noinsert:; \ 13780c1aa95SSatish Balay ailen[brow] = nrow; \ 13880c1aa95SSatish Balay } 13957b952d6SSatish Balay 140d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol) \ 141ac7a638eSSatish Balay { \ 142ac7a638eSSatish Balay brow = row/bs; \ 143ac7a638eSSatish Balay rp = bj + bi[brow]; ap = ba + bs2*bi[brow]; \ 144ac7a638eSSatish Balay rmax = bimax[brow]; nrow = bilen[brow]; \ 145ac7a638eSSatish Balay bcol = col/bs; \ 146ac7a638eSSatish Balay ridx = row % bs; cidx = col % bs; \ 147ac7a638eSSatish Balay low = 0; high = nrow; \ 148ac7a638eSSatish Balay while (high-low > 3) { \ 149ac7a638eSSatish Balay t = (low+high)/2; \ 150ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 151ac7a638eSSatish Balay else low = t; \ 152ac7a638eSSatish Balay } \ 153ac7a638eSSatish Balay for (_i=low; _i<high; _i++) { \ 154ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 155ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 156ac7a638eSSatish Balay bap = ap + bs2*_i + bs*cidx + ridx; \ 157ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 158ac7a638eSSatish Balay else *bap = value; \ 159ac7a638eSSatish Balay goto b_noinsert; \ 160ac7a638eSSatish Balay } \ 161ac7a638eSSatish Balay } \ 16289280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 163d40312a9SBarry Smith if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \ 164fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \ 165ac7a638eSSatish Balay N = nrow++ - 1; \ 166ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 167ac7a638eSSatish Balay for (ii=N; ii>=_i; ii--) { \ 168ac7a638eSSatish Balay rp[ii+1] = rp[ii]; \ 1693eda8832SBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \ 170ac7a638eSSatish Balay } \ 1713eda8832SBarry Smith if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);} \ 172ac7a638eSSatish Balay rp[_i] = bcol; \ 173ac7a638eSSatish Balay ap[bs2*_i + bs*cidx + ridx] = value; \ 174ac7a638eSSatish Balay b_noinsert:; \ 175ac7a638eSSatish Balay bilen[brow] = nrow; \ 176ac7a638eSSatish Balay } 177ac7a638eSSatish Balay 1784a2ae208SSatish Balay #undef __FUNCT__ 1794a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ" 180b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 18157b952d6SSatish Balay { 18257b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 18393fea6afSBarry Smith MatScalar value; 184ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 185dfbe8321SBarry Smith PetscErrorCode ierr; 186b24ad042SBarry Smith PetscInt i,j,row,col; 187d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 188d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,cstart_orig=mat->cmap->rstart; 189d0f46423SBarry Smith PetscInt cend_orig =mat->cmap->rend,bs=mat->rmap->bs; 19057b952d6SSatish Balay 191eada6651SSatish Balay /* Some Variables required in the macro */ 19280c1aa95SSatish Balay Mat A = baij->A; 19380c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)(A)->data; 194b24ad042SBarry Smith PetscInt *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j; 1953eda8832SBarry Smith MatScalar *aa =a->a; 196ac7a638eSSatish Balay 197ac7a638eSSatish Balay Mat B = baij->B; 198ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ*)(B)->data; 199b24ad042SBarry Smith PetscInt *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j; 2003eda8832SBarry Smith MatScalar *ba =b->a; 201ac7a638eSSatish Balay 202b24ad042SBarry Smith PetscInt *rp,ii,nrow,_i,rmax,N,brow,bcol; 203b24ad042SBarry Smith PetscInt low,high,t,ridx,cidx,bs2=a->bs2; 2043eda8832SBarry Smith MatScalar *ap,*bap; 20580c1aa95SSatish Balay 206d64ed03dSBarry Smith PetscFunctionBegin; 20757b952d6SSatish Balay for (i=0; i<m; i++) { 2085ef9f2a5SBarry Smith if (im[i] < 0) continue; 2092515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 210e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 211639f9d9dSBarry Smith #endif 21257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 21357b952d6SSatish Balay row = im[i] - rstart_orig; 21457b952d6SSatish Balay for (j=0; j<n; j++) { 21557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 21657b952d6SSatish Balay col = in[j] - cstart_orig; 217db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 218db4deed7SKarl Rupp else value = v[i+j*m]; 219d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]); 22080c1aa95SSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 22173959e64SBarry Smith } else if (in[j] < 0) continue; 2222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 223660746e0SBarry Smith else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1); 224639f9d9dSBarry Smith #endif 22557b952d6SSatish Balay else { 22657b952d6SSatish Balay if (mat->was_assembled) { 227905e6a2fSBarry Smith if (!baij->colmap) { 228ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 229905e6a2fSBarry Smith } 230aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2310f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr); 232bba1ac68SSatish Balay col = col - 1; 23348e59246SSatish Balay #else 234bba1ac68SSatish Balay col = baij->colmap[in[j]/bs] - 1; 23548e59246SSatish Balay #endif 236c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 237ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 2388295de27SSatish Balay col = in[j]; 2399bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2409bf004c3SSatish Balay B = baij->B; 2419bf004c3SSatish Balay b = (Mat_SeqBAIJ*)(B)->data; 2429bf004c3SSatish Balay bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j; 2439bf004c3SSatish Balay ba =b->a; 244c9ef50b2SBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]); 245c9ef50b2SBarry Smith else col += in[j]%bs; 2468295de27SSatish Balay } else col = in[j]; 247db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 248db4deed7SKarl Rupp else value = v[i+j*m]; 249d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]); 25090da58bdSSatish Balay /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */ 25157b952d6SSatish Balay } 25257b952d6SSatish Balay } 253d64ed03dSBarry Smith } else { 2544cb17eb5SBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 25590f02eecSBarry Smith if (!baij->donotstash) { 2565080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 257ff2fd236SBarry Smith if (roworiented) { 258b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 259ff2fd236SBarry Smith } else { 260b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 26157b952d6SSatish Balay } 26257b952d6SSatish Balay } 26357b952d6SSatish Balay } 26490f02eecSBarry Smith } 2653a40ed3dSBarry Smith PetscFunctionReturn(0); 26657b952d6SSatish Balay } 26757b952d6SSatish Balay 2684a2ae208SSatish Balay #undef __FUNCT__ 269880c6e6aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined" 2708ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol) 271880c6e6aSBarry Smith { 272880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data; 2738ab52850SBarry Smith PetscInt *rp,low,high,t,ii,jj,nrow,i,rmax,N; 274880c6e6aSBarry Smith PetscInt *imax=a->imax,*ai=a->i,*ailen=a->ilen; 275880c6e6aSBarry Smith PetscErrorCode ierr; 2768ab52850SBarry Smith PetscInt *aj =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs; 277880c6e6aSBarry Smith PetscBool roworiented=a->roworiented; 278880c6e6aSBarry Smith const PetscScalar *value = v; 279880c6e6aSBarry Smith MatScalar *ap,*aa = a->a,*bap; 280880c6e6aSBarry Smith 281880c6e6aSBarry Smith PetscFunctionBegin; 282880c6e6aSBarry Smith rp = aj + ai[row]; 283880c6e6aSBarry Smith ap = aa + bs2*ai[row]; 284880c6e6aSBarry Smith rmax = imax[row]; 285880c6e6aSBarry Smith nrow = ailen[row]; 286880c6e6aSBarry Smith low = 0; 287880c6e6aSBarry Smith high = nrow; 2888ab52850SBarry Smith value = v; 2898ab52850SBarry Smith low = 0; 2908ab52850SBarry Smith high = nrow; 291880c6e6aSBarry Smith while (high-low > 7) { 292880c6e6aSBarry Smith t = (low+high)/2; 293880c6e6aSBarry Smith if (rp[t] > col) high = t; 294880c6e6aSBarry Smith else low = t; 295880c6e6aSBarry Smith } 296880c6e6aSBarry Smith for (i=low; i<high; i++) { 297880c6e6aSBarry Smith if (rp[i] > col) break; 298880c6e6aSBarry Smith if (rp[i] == col) { 299880c6e6aSBarry Smith bap = ap + bs2*i; 300880c6e6aSBarry Smith if (roworiented) { 301880c6e6aSBarry Smith if (is == ADD_VALUES) { 3028ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 303880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 304880c6e6aSBarry Smith bap[jj] += *value++; 305880c6e6aSBarry Smith } 306880c6e6aSBarry Smith } 307880c6e6aSBarry Smith } else { 3088ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 309880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 310880c6e6aSBarry Smith bap[jj] = *value++; 311880c6e6aSBarry Smith } 312880c6e6aSBarry Smith } 313880c6e6aSBarry Smith } 314880c6e6aSBarry Smith } else { 315880c6e6aSBarry Smith if (is == ADD_VALUES) { 3168ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 317880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 318880c6e6aSBarry Smith bap[jj] += value[jj]; 319880c6e6aSBarry Smith } 320880c6e6aSBarry Smith bap += bs; 321880c6e6aSBarry Smith } 322880c6e6aSBarry Smith } else { 3238ab52850SBarry Smith for (ii=0; ii<bs; ii++,value+=bs) { 324880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 325880c6e6aSBarry Smith bap[jj] = value[jj]; 326880c6e6aSBarry Smith } 327880c6e6aSBarry Smith bap += bs; 328880c6e6aSBarry Smith } 329880c6e6aSBarry Smith } 330880c6e6aSBarry Smith } 331880c6e6aSBarry Smith goto noinsert2; 332880c6e6aSBarry Smith } 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 335880c6e6aSBarry Smith if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol); 336880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar); 337880c6e6aSBarry Smith N = nrow++ - 1; high++; 338880c6e6aSBarry Smith /* shift up all the later entries in this row */ 339880c6e6aSBarry Smith for (ii=N; ii>=i; ii--) { 340880c6e6aSBarry Smith rp[ii+1] = rp[ii]; 341880c6e6aSBarry Smith ierr = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); 342880c6e6aSBarry Smith } 343880c6e6aSBarry Smith if (N >= i) { 344880c6e6aSBarry Smith ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr); 345880c6e6aSBarry Smith } 346880c6e6aSBarry Smith rp[i] = col; 347880c6e6aSBarry Smith bap = ap + bs2*i; 348880c6e6aSBarry Smith if (roworiented) { 3498ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 350880c6e6aSBarry Smith for (jj=ii; jj<bs2; jj+=bs) { 351880c6e6aSBarry Smith bap[jj] = *value++; 352880c6e6aSBarry Smith } 353880c6e6aSBarry Smith } 354880c6e6aSBarry Smith } else { 3558ab52850SBarry Smith for (ii=0; ii<bs; ii++) { 356880c6e6aSBarry Smith for (jj=0; jj<bs; jj++) { 357880c6e6aSBarry Smith *bap++ = *value++; 358880c6e6aSBarry Smith } 359880c6e6aSBarry Smith } 360880c6e6aSBarry Smith } 361880c6e6aSBarry Smith noinsert2:; 362880c6e6aSBarry Smith ailen[row] = nrow; 363880c6e6aSBarry Smith PetscFunctionReturn(0); 364880c6e6aSBarry Smith } 365880c6e6aSBarry Smith 366880c6e6aSBarry Smith #undef __FUNCT__ 36797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ" 3688ab52850SBarry Smith /* 3698ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3708ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3718ab52850SBarry Smith */ 37297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 373ab26458aSBarry Smith { 374ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 375dd6ea824SBarry Smith const PetscScalar *value; 376f15d580aSBarry Smith MatScalar *barray = baij->barray; 377ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 378dfbe8321SBarry Smith PetscErrorCode ierr; 379899cda47SBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 380899cda47SBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 381d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 382ab26458aSBarry Smith 383b16ae2b1SBarry Smith PetscFunctionBegin; 38430793edcSSatish Balay if (!barray) { 385785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 38682502324SSatish Balay baij->barray = barray; 38730793edcSSatish Balay } 38830793edcSSatish Balay 38926fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 39026fbe8dcSKarl Rupp else stepval = (m-1)*bs; 39126fbe8dcSKarl Rupp 392ab26458aSBarry Smith for (i=0; i<m; i++) { 3935ef9f2a5SBarry Smith if (im[i] < 0) continue; 3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 395bb003d0fSBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1); 396ab26458aSBarry Smith #endif 397ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 398ab26458aSBarry Smith row = im[i] - rstart; 399ab26458aSBarry Smith for (j=0; j<n; j++) { 40015b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 40115b57d14SSatish Balay if ((roworiented) && (n == 1)) { 402f15d580aSBarry Smith barray = (MatScalar*)v + i*bs2; 40315b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 404f15d580aSBarry Smith barray = (MatScalar*)v + j*bs2; 40515b57d14SSatish Balay } else { /* Here a copy is required */ 406ab26458aSBarry Smith if (roworiented) { 40753ef36baSBarry Smith value = v + (i*(stepval+bs) + j)*bs; 408ab26458aSBarry Smith } else { 40953ef36baSBarry Smith value = v + (j*(stepval+bs) + i)*bs; 410abef11f7SSatish Balay } 41153ef36baSBarry Smith for (ii=0; ii<bs; ii++,value+=bs+stepval) { 41226fbe8dcSKarl Rupp for (jj=0; jj<bs; jj++) barray[jj] = value[jj]; 41353ef36baSBarry Smith barray += bs; 41447513183SBarry Smith } 41530793edcSSatish Balay barray -= bs2; 41615b57d14SSatish Balay } 417abef11f7SSatish Balay 418abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 419abef11f7SSatish Balay col = in[j] - cstart; 4208ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 42126fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 4222515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 4238ab52850SBarry Smith else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1); 424ab26458aSBarry Smith #endif 425ab26458aSBarry Smith else { 426ab26458aSBarry Smith if (mat->was_assembled) { 427ab26458aSBarry Smith if (!baij->colmap) { 428ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 429ab26458aSBarry Smith } 430a5eb4965SSatish Balay 4312515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 432aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 433b24ad042SBarry Smith { PetscInt data; 4340f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 435e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 436fa46199cSSatish Balay } 43748e59246SSatish Balay #else 438e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 439a5eb4965SSatish Balay #endif 44048e59246SSatish Balay #endif 441aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4420f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 443fa46199cSSatish Balay col = (col - 1)/bs; 44448e59246SSatish Balay #else 445a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1)/bs; 44648e59246SSatish Balay #endif 4470e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) { 448ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 449ab26458aSBarry Smith col = in[j]; 450bb003d0fSBarry Smith } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]); 451db4deed7SKarl Rupp } else col = in[j]; 4528ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 453ab26458aSBarry Smith } 454ab26458aSBarry Smith } 455d64ed03dSBarry Smith } else { 456bb003d0fSBarry Smith if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]); 457ab26458aSBarry Smith if (!baij->donotstash) { 458ff2fd236SBarry Smith if (roworiented) { 4596fa18ffdSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 460ff2fd236SBarry Smith } else { 4616fa18ffdSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 462ff2fd236SBarry Smith } 463abef11f7SSatish Balay } 464ab26458aSBarry Smith } 465ab26458aSBarry Smith } 4663a40ed3dSBarry Smith PetscFunctionReturn(0); 467ab26458aSBarry Smith } 4686fa18ffdSBarry Smith 4690bdbc534SSatish Balay #define HASH_KEY 0.6180339887 470b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp))) 471b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 472b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 4734a2ae208SSatish Balay #undef __FUNCT__ 47497e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT" 47597e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 4760bdbc534SSatish Balay { 4770bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 478ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 479dfbe8321SBarry Smith PetscErrorCode ierr; 480b24ad042SBarry Smith PetscInt i,j,row,col; 481d0f46423SBarry Smith PetscInt rstart_orig=mat->rmap->rstart; 482d0f46423SBarry Smith PetscInt rend_orig =mat->rmap->rend,Nbs=baij->Nbs; 483d0f46423SBarry Smith PetscInt h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx; 484329f5518SBarry Smith PetscReal tmp; 4853eda8832SBarry Smith MatScalar **HD = baij->hd,value; 4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 487b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 4884a15367fSSatish Balay #endif 4890bdbc534SSatish Balay 4900bdbc534SSatish Balay PetscFunctionBegin; 4910bdbc534SSatish Balay for (i=0; i<m; i++) { 4922515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 493e32f2f54SBarry Smith if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row"); 494e32f2f54SBarry Smith if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1); 4950bdbc534SSatish Balay #endif 4960bdbc534SSatish Balay row = im[i]; 497c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4980bdbc534SSatish Balay for (j=0; j<n; j++) { 4990bdbc534SSatish Balay col = in[j]; 500db4deed7SKarl Rupp if (roworiented) value = v[i*n+j]; 501db4deed7SKarl Rupp else value = v[i+j*m]; 502b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 503c2760754SSatish Balay key = (row/bs)*Nbs+(col/bs)+1; 504c2760754SSatish Balay h1 = HASH(size,key,tmp); 5050bdbc534SSatish Balay 506c2760754SSatish Balay 507c2760754SSatish Balay idx = h1; 5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 509187ce0cbSSatish Balay insert_ct++; 510187ce0cbSSatish Balay total_ct++; 511187ce0cbSSatish Balay if (HT[idx] != key) { 512187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 513187ce0cbSSatish Balay if (idx == size) { 514187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 515f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 516187ce0cbSSatish Balay } 517187ce0cbSSatish Balay } 518187ce0cbSSatish Balay #else 519c2760754SSatish Balay if (HT[idx] != key) { 520c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 521c2760754SSatish Balay if (idx == size) { 522c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 523f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 524c2760754SSatish Balay } 525c2760754SSatish Balay } 526187ce0cbSSatish Balay #endif 527c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 528c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value; 529c2760754SSatish Balay else *(HD[idx]+ (col % bs)*bs + (row % bs)) = value; 5300bdbc534SSatish Balay } 53126fbe8dcSKarl Rupp } else if (!baij->donotstash) { 532ff2fd236SBarry Smith if (roworiented) { 533b400d20cSBarry Smith ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr); 534ff2fd236SBarry Smith } else { 535b400d20cSBarry Smith ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr); 5360bdbc534SSatish Balay } 5370bdbc534SSatish Balay } 5380bdbc534SSatish Balay } 5392515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 540187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 541187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 542187ce0cbSSatish Balay #endif 5430bdbc534SSatish Balay PetscFunctionReturn(0); 5440bdbc534SSatish Balay } 5450bdbc534SSatish Balay 5464a2ae208SSatish Balay #undef __FUNCT__ 54797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT" 54897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv) 5490bdbc534SSatish Balay { 5500bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 551ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 552dfbe8321SBarry Smith PetscErrorCode ierr; 553b24ad042SBarry Smith PetscInt i,j,ii,jj,row,col; 554899cda47SBarry Smith PetscInt rstart=baij->rstartbs; 555d0f46423SBarry Smith PetscInt rend =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2; 556b24ad042SBarry Smith PetscInt h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs; 557329f5518SBarry Smith PetscReal tmp; 5583eda8832SBarry Smith MatScalar **HD = baij->hd,*baij_a; 559dd6ea824SBarry Smith const PetscScalar *v_t,*value; 5602515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 561b24ad042SBarry Smith PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct; 5624a15367fSSatish Balay #endif 5630bdbc534SSatish Balay 564d0a41580SSatish Balay PetscFunctionBegin; 56526fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 56626fbe8dcSKarl Rupp else stepval = (m-1)*bs; 56726fbe8dcSKarl Rupp 5680bdbc534SSatish Balay for (i=0; i<m; i++) { 5692515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 570e32f2f54SBarry Smith if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]); 571e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1); 5720bdbc534SSatish Balay #endif 5730bdbc534SSatish Balay row = im[i]; 574ab715e2cSSatish Balay v_t = v + i*nbs2; 575c2760754SSatish Balay if (row >= rstart && row < rend) { 5760bdbc534SSatish Balay for (j=0; j<n; j++) { 5770bdbc534SSatish Balay col = in[j]; 5780bdbc534SSatish Balay 5790bdbc534SSatish Balay /* Look up into the Hash Table */ 580c2760754SSatish Balay key = row*Nbs+col+1; 581c2760754SSatish Balay h1 = HASH(size,key,tmp); 5820bdbc534SSatish Balay 583c2760754SSatish Balay idx = h1; 5842515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 585187ce0cbSSatish Balay total_ct++; 586187ce0cbSSatish Balay insert_ct++; 587187ce0cbSSatish Balay if (HT[idx] != key) { 588187ce0cbSSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ; 589187ce0cbSSatish Balay if (idx == size) { 590187ce0cbSSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ; 591f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 592187ce0cbSSatish Balay } 593187ce0cbSSatish Balay } 594187ce0cbSSatish Balay #else 595c2760754SSatish Balay if (HT[idx] != key) { 596c2760754SSatish Balay for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ; 597c2760754SSatish Balay if (idx == size) { 598c2760754SSatish Balay for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ; 599f23aa3ddSBarry Smith if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col); 600c2760754SSatish Balay } 601c2760754SSatish Balay } 602187ce0cbSSatish Balay #endif 603c2760754SSatish Balay baij_a = HD[idx]; 6040bdbc534SSatish Balay if (roworiented) { 605c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 606187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 607187ce0cbSSatish Balay value = v_t; 608187ce0cbSSatish Balay v_t += bs; 609fef45726SSatish Balay if (addv == ADD_VALUES) { 610c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 611c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 612fef45726SSatish Balay baij_a[jj] += *value++; 613b4cc0f5aSSatish Balay } 614b4cc0f5aSSatish Balay } 615fef45726SSatish Balay } else { 616c2760754SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval) { 617c2760754SSatish Balay for (jj=ii; jj<bs2; jj+=bs) { 618fef45726SSatish Balay baij_a[jj] = *value++; 619fef45726SSatish Balay } 620fef45726SSatish Balay } 621fef45726SSatish Balay } 6220bdbc534SSatish Balay } else { 6230bdbc534SSatish Balay value = v + j*(stepval+bs)*bs + i*bs; 624fef45726SSatish Balay if (addv == ADD_VALUES) { 625b4cc0f5aSSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 6260bdbc534SSatish Balay for (jj=0; jj<bs; jj++) { 627fef45726SSatish Balay baij_a[jj] += *value++; 628fef45726SSatish Balay } 629fef45726SSatish Balay } 630fef45726SSatish Balay } else { 631fef45726SSatish Balay for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) { 632fef45726SSatish Balay for (jj=0; jj<bs; jj++) { 633fef45726SSatish Balay baij_a[jj] = *value++; 634fef45726SSatish Balay } 635b4cc0f5aSSatish Balay } 6360bdbc534SSatish Balay } 6370bdbc534SSatish Balay } 6380bdbc534SSatish Balay } 6390bdbc534SSatish Balay } else { 6400bdbc534SSatish Balay if (!baij->donotstash) { 6410bdbc534SSatish Balay if (roworiented) { 6428798bf22SSatish Balay ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6430bdbc534SSatish Balay } else { 6448798bf22SSatish Balay ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 6450bdbc534SSatish Balay } 6460bdbc534SSatish Balay } 6470bdbc534SSatish Balay } 6480bdbc534SSatish Balay } 6492515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 650187ce0cbSSatish Balay baij->ht_total_ct = total_ct; 651187ce0cbSSatish Balay baij->ht_insert_ct = insert_ct; 652187ce0cbSSatish Balay #endif 6530bdbc534SSatish Balay PetscFunctionReturn(0); 6540bdbc534SSatish Balay } 655133cdb44SSatish Balay 6564a2ae208SSatish Balay #undef __FUNCT__ 6574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ" 658b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[]) 659d6de1c52SSatish Balay { 660d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 6616849ba73SBarry Smith PetscErrorCode ierr; 662d0f46423SBarry Smith PetscInt bs = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend; 663d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data; 664d6de1c52SSatish Balay 665133cdb44SSatish Balay PetscFunctionBegin; 666d6de1c52SSatish Balay for (i=0; i<m; i++) { 667e32f2f54SBarry Smith if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/ 668e32f2f54SBarry Smith if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1); 669d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 670d6de1c52SSatish Balay row = idxm[i] - bsrstart; 671d6de1c52SSatish Balay for (j=0; j<n; j++) { 672e32f2f54SBarry Smith if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */ 673e32f2f54SBarry Smith if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1); 674d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 675d6de1c52SSatish Balay col = idxn[j] - bscstart; 67698dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 677d64ed03dSBarry Smith } else { 678905e6a2fSBarry Smith if (!baij->colmap) { 679ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 680905e6a2fSBarry Smith } 681aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6820f5bd95cSBarry Smith ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr); 683fa46199cSSatish Balay data--; 68448e59246SSatish Balay #else 68548e59246SSatish Balay data = baij->colmap[idxn[j]/bs]-1; 68648e59246SSatish Balay #endif 68748e59246SSatish Balay if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0; 688d9d09a02SSatish Balay else { 68948e59246SSatish Balay col = data + idxn[j]%bs; 69098dd23e9SBarry Smith ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr); 691d6de1c52SSatish Balay } 692d6de1c52SSatish Balay } 693d6de1c52SSatish Balay } 694f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported"); 695d6de1c52SSatish Balay } 6963a40ed3dSBarry Smith PetscFunctionReturn(0); 697d6de1c52SSatish Balay } 698d6de1c52SSatish Balay 6994a2ae208SSatish Balay #undef __FUNCT__ 7004a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ" 701dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm) 702d6de1c52SSatish Balay { 703d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 704d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data; 705dfbe8321SBarry Smith PetscErrorCode ierr; 706d0f46423SBarry Smith PetscInt i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col; 707329f5518SBarry Smith PetscReal sum = 0.0; 7083eda8832SBarry Smith MatScalar *v; 709d6de1c52SSatish Balay 710d64ed03dSBarry Smith PetscFunctionBegin; 711d6de1c52SSatish Balay if (baij->size == 1) { 712064f8208SBarry Smith ierr = MatNorm(baij->A,type,nrm);CHKERRQ(ierr); 713d6de1c52SSatish Balay } else { 714d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 715d6de1c52SSatish Balay v = amat->a; 7168a62d963SHong Zhang nz = amat->nz*bs2; 7178a62d963SHong Zhang for (i=0; i<nz; i++) { 718329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 719d6de1c52SSatish Balay } 720d6de1c52SSatish Balay v = bmat->a; 7218a62d963SHong Zhang nz = bmat->nz*bs2; 7228a62d963SHong Zhang for (i=0; i<nz; i++) { 723329f5518SBarry Smith sum += PetscRealPart(PetscConj(*v)*(*v)); v++; 724d6de1c52SSatish Balay } 725b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7268f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 7278a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 7288a62d963SHong Zhang PetscReal *tmp,*tmp2; 729899cda47SBarry Smith PetscInt *jj,*garray=baij->garray,cstart=baij->rstartbs; 730dcca6d9dSJed Brown ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr); 731d0f46423SBarry Smith ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr); 7328a62d963SHong Zhang v = amat->a; jj = amat->j; 7338a62d963SHong Zhang for (i=0; i<amat->nz; i++) { 7348a62d963SHong Zhang for (j=0; j<bs; j++) { 7358a62d963SHong Zhang col = bs*(cstart + *jj) + j; /* column index */ 7368a62d963SHong Zhang for (row=0; row<bs; row++) { 7378a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7388a62d963SHong Zhang } 7398a62d963SHong Zhang } 7408a62d963SHong Zhang jj++; 7418a62d963SHong Zhang } 7428a62d963SHong Zhang v = bmat->a; jj = bmat->j; 7438a62d963SHong Zhang for (i=0; i<bmat->nz; i++) { 7448a62d963SHong Zhang for (j=0; j<bs; j++) { 7458a62d963SHong Zhang col = bs*garray[*jj] + j; 7468a62d963SHong Zhang for (row=0; row<bs; row++) { 7478a62d963SHong Zhang tmp[col] += PetscAbsScalar(*v); v++; 7488a62d963SHong Zhang } 7498a62d963SHong Zhang } 7508a62d963SHong Zhang jj++; 7518a62d963SHong Zhang } 752b2566f29SBarry Smith ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 7538a62d963SHong Zhang *nrm = 0.0; 754d0f46423SBarry Smith for (j=0; j<mat->cmap->N; j++) { 7558a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 7568a62d963SHong Zhang } 757fca92195SBarry Smith ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr); 7588a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 759577dd1f9SKris Buschelman PetscReal *sums; 760785e854fSJed Brown ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr); 7618a62d963SHong Zhang sum = 0.0; 7628a62d963SHong Zhang for (j=0; j<amat->mbs; j++) { 7638a62d963SHong Zhang for (row=0; row<bs; row++) sums[row] = 0.0; 7648a62d963SHong Zhang v = amat->a + bs2*amat->i[j]; 7658a62d963SHong Zhang nz = amat->i[j+1]-amat->i[j]; 7668a62d963SHong Zhang for (i=0; i<nz; i++) { 7678a62d963SHong Zhang for (col=0; col<bs; col++) { 7688a62d963SHong Zhang for (row=0; row<bs; row++) { 7698a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7708a62d963SHong Zhang } 7718a62d963SHong Zhang } 7728a62d963SHong Zhang } 7738a62d963SHong Zhang v = bmat->a + bs2*bmat->i[j]; 7748a62d963SHong Zhang nz = bmat->i[j+1]-bmat->i[j]; 7758a62d963SHong Zhang for (i=0; i<nz; i++) { 7768a62d963SHong Zhang for (col=0; col<bs; col++) { 7778a62d963SHong Zhang for (row=0; row<bs; row++) { 7788a62d963SHong Zhang sums[row] += PetscAbsScalar(*v); v++; 7798a62d963SHong Zhang } 7808a62d963SHong Zhang } 7818a62d963SHong Zhang } 7828a62d963SHong Zhang for (row=0; row<bs; row++) { 7838a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7848a62d963SHong Zhang } 7858a62d963SHong Zhang } 786b2566f29SBarry Smith ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 787577dd1f9SKris Buschelman ierr = PetscFree(sums);CHKERRQ(ierr); 788ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet"); 789d64ed03dSBarry Smith } 7903a40ed3dSBarry Smith PetscFunctionReturn(0); 791d6de1c52SSatish Balay } 79257b952d6SSatish Balay 793fef45726SSatish Balay /* 794fef45726SSatish Balay Creates the hash table, and sets the table 795fef45726SSatish Balay This table is created only once. 796fef45726SSatish Balay If new entried need to be added to the matrix 797fef45726SSatish Balay then the hash table has to be destroyed and 798fef45726SSatish Balay recreated. 799fef45726SSatish Balay */ 8004a2ae208SSatish Balay #undef __FUNCT__ 8014a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private" 802dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor) 803596b8d2eSBarry Smith { 804596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 805596b8d2eSBarry Smith Mat A = baij->A,B=baij->B; 806596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data; 807b24ad042SBarry Smith PetscInt i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j; 8086849ba73SBarry Smith PetscErrorCode ierr; 809fca92195SBarry Smith PetscInt ht_size,bs2=baij->bs2,rstart=baij->rstartbs; 810899cda47SBarry Smith PetscInt cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs; 811b24ad042SBarry Smith PetscInt *HT,key; 8123eda8832SBarry Smith MatScalar **HD; 813329f5518SBarry Smith PetscReal tmp; 8146cf91177SBarry Smith #if defined(PETSC_USE_INFO) 815b24ad042SBarry Smith PetscInt ct=0,max=0; 8164a15367fSSatish Balay #endif 817fef45726SSatish Balay 818d64ed03dSBarry Smith PetscFunctionBegin; 819fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 820fef45726SSatish Balay 821fca92195SBarry Smith baij->ht_size = (PetscInt)(factor*nz); 822fca92195SBarry Smith ht_size = baij->ht_size; 8230bdbc534SSatish Balay 824fef45726SSatish Balay /* Allocate Memory for Hash Table */ 8251795a4d1SJed Brown ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr); 826b9e4cc15SSatish Balay HD = baij->hd; 827a07cd24cSSatish Balay HT = baij->ht; 828b9e4cc15SSatish Balay 829596b8d2eSBarry Smith /* Loop Over A */ 8300bdbc534SSatish Balay for (i=0; i<a->mbs; i++) { 831596b8d2eSBarry Smith for (j=ai[i]; j<ai[i+1]; j++) { 8320bdbc534SSatish Balay row = i+rstart; 8330bdbc534SSatish Balay col = aj[j]+cstart; 834596b8d2eSBarry Smith 835187ce0cbSSatish Balay key = row*Nbs + col + 1; 836fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 837fca92195SBarry Smith for (k=0; k<ht_size; k++) { 838fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 839fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 840fca92195SBarry Smith HD[(h1+k)%ht_size] = a->a + j*bs2; 841596b8d2eSBarry Smith break; 8426cf91177SBarry Smith #if defined(PETSC_USE_INFO) 843187ce0cbSSatish Balay } else { 844187ce0cbSSatish Balay ct++; 845187ce0cbSSatish Balay #endif 846596b8d2eSBarry Smith } 847187ce0cbSSatish Balay } 8486cf91177SBarry Smith #if defined(PETSC_USE_INFO) 849187ce0cbSSatish Balay if (k> max) max = k; 850187ce0cbSSatish Balay #endif 851596b8d2eSBarry Smith } 852596b8d2eSBarry Smith } 853596b8d2eSBarry Smith /* Loop Over B */ 8540bdbc534SSatish Balay for (i=0; i<b->mbs; i++) { 855596b8d2eSBarry Smith for (j=bi[i]; j<bi[i+1]; j++) { 8560bdbc534SSatish Balay row = i+rstart; 8570bdbc534SSatish Balay col = garray[bj[j]]; 858187ce0cbSSatish Balay key = row*Nbs + col + 1; 859fca92195SBarry Smith h1 = HASH(ht_size,key,tmp); 860fca92195SBarry Smith for (k=0; k<ht_size; k++) { 861fca92195SBarry Smith if (!HT[(h1+k)%ht_size]) { 862fca92195SBarry Smith HT[(h1+k)%ht_size] = key; 863fca92195SBarry Smith HD[(h1+k)%ht_size] = b->a + j*bs2; 864596b8d2eSBarry Smith break; 8656cf91177SBarry Smith #if defined(PETSC_USE_INFO) 866187ce0cbSSatish Balay } else { 867187ce0cbSSatish Balay ct++; 868187ce0cbSSatish Balay #endif 869596b8d2eSBarry Smith } 870187ce0cbSSatish Balay } 8716cf91177SBarry Smith #if defined(PETSC_USE_INFO) 872187ce0cbSSatish Balay if (k> max) max = k; 873187ce0cbSSatish Balay #endif 874596b8d2eSBarry Smith } 875596b8d2eSBarry Smith } 876596b8d2eSBarry Smith 877596b8d2eSBarry Smith /* Print Summary */ 8786cf91177SBarry Smith #if defined(PETSC_USE_INFO) 879fca92195SBarry Smith for (i=0,j=0; i<ht_size; i++) { 88026fbe8dcSKarl Rupp if (HT[i]) j++; 881c38d4ed2SBarry Smith } 8821e2582c4SBarry Smith ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr); 883187ce0cbSSatish Balay #endif 8843a40ed3dSBarry Smith PetscFunctionReturn(0); 885596b8d2eSBarry Smith } 88657b952d6SSatish Balay 8874a2ae208SSatish Balay #undef __FUNCT__ 8884a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ" 889dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode) 890bbb85fb3SSatish Balay { 891bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 892dfbe8321SBarry Smith PetscErrorCode ierr; 893b24ad042SBarry Smith PetscInt nstash,reallocs; 894bbb85fb3SSatish Balay 895bbb85fb3SSatish Balay PetscFunctionBegin; 89626fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 897bbb85fb3SSatish Balay 898d0f46423SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr); 8991e2582c4SBarry Smith ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr); 9008798bf22SSatish Balay ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr); 9011e2582c4SBarry Smith ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 90246680499SSatish Balay ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr); 9031e2582c4SBarry Smith ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr); 904bbb85fb3SSatish Balay PetscFunctionReturn(0); 905bbb85fb3SSatish Balay } 906bbb85fb3SSatish Balay 9074a2ae208SSatish Balay #undef __FUNCT__ 9084a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ" 909dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode) 910bbb85fb3SSatish Balay { 911bbb85fb3SSatish Balay Mat_MPIBAIJ *baij=(Mat_MPIBAIJ*)mat->data; 91291c97fd4SSatish Balay Mat_SeqBAIJ *a =(Mat_SeqBAIJ*)baij->A->data; 9136849ba73SBarry Smith PetscErrorCode ierr; 914b24ad042SBarry Smith PetscInt i,j,rstart,ncols,flg,bs2=baij->bs2; 915e44c0bd4SBarry Smith PetscInt *row,*col; 916ace3abfcSBarry Smith PetscBool r1,r2,r3,other_disassembled; 9173eda8832SBarry Smith MatScalar *val; 918b24ad042SBarry Smith PetscMPIInt n; 919bbb85fb3SSatish Balay 920bbb85fb3SSatish Balay PetscFunctionBegin; 9215fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 9224cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 923a2d1c673SSatish Balay while (1) { 9248798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 925a2d1c673SSatish Balay if (!flg) break; 926a2d1c673SSatish Balay 927bbb85fb3SSatish Balay for (i=0; i<n;) { 928bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 92926fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 93026fbe8dcSKarl Rupp if (row[j] != rstart) break; 93126fbe8dcSKarl Rupp } 932bbb85fb3SSatish Balay if (j < n) ncols = j-i; 933bbb85fb3SSatish Balay else ncols = n-i; 934bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 9354b4eb8d3SJed Brown ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr); 936bbb85fb3SSatish Balay i = j; 937bbb85fb3SSatish Balay } 938bbb85fb3SSatish Balay } 9398798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr); 940a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 941a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 942a2d1c673SSatish Balay restore the original flags */ 943a2d1c673SSatish Balay r1 = baij->roworiented; 944a2d1c673SSatish Balay r2 = a->roworiented; 94591c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented; 94626fbe8dcSKarl Rupp 9477c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 9487c922b88SBarry Smith a->roworiented = PETSC_FALSE; 94926fbe8dcSKarl Rupp 95091c97fd4SSatish Balay (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 951a2d1c673SSatish Balay while (1) { 9528798bf22SSatish Balay ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr); 953a2d1c673SSatish Balay if (!flg) break; 954a2d1c673SSatish Balay 955a2d1c673SSatish Balay for (i=0; i<n;) { 956a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 95726fbe8dcSKarl Rupp for (j=i,rstart=row[j]; j<n; j++) { 95826fbe8dcSKarl Rupp if (row[j] != rstart) break; 95926fbe8dcSKarl Rupp } 960a2d1c673SSatish Balay if (j < n) ncols = j-i; 961a2d1c673SSatish Balay else ncols = n-i; 9624b4eb8d3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr); 963a2d1c673SSatish Balay i = j; 964a2d1c673SSatish Balay } 965a2d1c673SSatish Balay } 9668798bf22SSatish Balay ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr); 96726fbe8dcSKarl Rupp 968a2d1c673SSatish Balay baij->roworiented = r1; 969a2d1c673SSatish Balay a->roworiented = r2; 97026fbe8dcSKarl Rupp 97191c97fd4SSatish Balay ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */ 972bbb85fb3SSatish Balay } 973bbb85fb3SSatish Balay 974bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr); 975bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr); 976bbb85fb3SSatish Balay 977bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 978bbb85fb3SSatish Balay also disassemble ourselfs, in order that we may reassemble. */ 979bbb85fb3SSatish Balay /* 980bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 981bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 982bbb85fb3SSatish Balay */ 983bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) { 984b2566f29SBarry Smith ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 985bbb85fb3SSatish Balay if (mat->was_assembled && !other_disassembled) { 986ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 987bbb85fb3SSatish Balay } 988bbb85fb3SSatish Balay } 989bbb85fb3SSatish Balay 990bbb85fb3SSatish Balay if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) { 991bbb85fb3SSatish Balay ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr); 992bbb85fb3SSatish Balay } 993bbb85fb3SSatish Balay ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr); 994bbb85fb3SSatish Balay ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr); 995bbb85fb3SSatish Balay 9966cf91177SBarry Smith #if defined(PETSC_USE_INFO) 997bbb85fb3SSatish Balay if (baij->ht && mode== MAT_FINAL_ASSEMBLY) { 9981e2582c4SBarry Smith ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr); 99926fbe8dcSKarl Rupp 1000bbb85fb3SSatish Balay baij->ht_total_ct = 0; 1001bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 1002bbb85fb3SSatish Balay } 1003bbb85fb3SSatish Balay #endif 1004bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 1005bbb85fb3SSatish Balay ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr); 100626fbe8dcSKarl Rupp 1007bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 1008bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 1009bbb85fb3SSatish Balay } 1010bbb85fb3SSatish Balay 1011fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 101226fbe8dcSKarl Rupp 1013606d414cSSatish Balay baij->rowvalues = 0; 10144f9cfa9eSBarry Smith 10154f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 10164f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 1017e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 1018b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1019e56f5c9eSBarry Smith } 1020bbb85fb3SSatish Balay PetscFunctionReturn(0); 1021bbb85fb3SSatish Balay } 102257b952d6SSatish Balay 10237da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer); 10249804daf3SBarry Smith #include <petscdraw.h> 10254a2ae208SSatish Balay #undef __FUNCT__ 10264a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket" 10276849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer) 102857b952d6SSatish Balay { 102957b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1030dfbe8321SBarry Smith PetscErrorCode ierr; 10317da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 1032d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 1033ace3abfcSBarry Smith PetscBool iascii,isdraw; 1034b0a32e0cSBarry Smith PetscViewer sviewer; 1035f3ef73ceSBarry Smith PetscViewerFormat format; 103657b952d6SSatish Balay 1037d64ed03dSBarry Smith PetscFunctionBegin; 1038251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1039251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 104032077d6dSBarry Smith if (iascii) { 1041b0a32e0cSBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 1042456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 10434e220ebcSLois Curfman McInnes MatInfo info; 1044ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1045d41123aaSBarry Smith ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr); 10461575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 104777431f27SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n", 104816608c43SJed Brown rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr); 1049d132466eSBarry Smith ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr); 1050e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 1051d132466eSBarry Smith ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr); 1052e6dd01d4SJed Brown ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr); 1053b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 10541575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 105507d81ca4SBarry Smith ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr); 105657b952d6SSatish Balay ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr); 10573a40ed3dSBarry Smith PetscFunctionReturn(0); 1058fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 105977431f27SBarry Smith ierr = PetscViewerASCIIPrintf(viewer," block size is %D\n",bs);CHKERRQ(ierr); 10603a40ed3dSBarry Smith PetscFunctionReturn(0); 106104929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 106204929863SHong Zhang PetscFunctionReturn(0); 106357b952d6SSatish Balay } 106457b952d6SSatish Balay } 106557b952d6SSatish Balay 10660f5bd95cSBarry Smith if (isdraw) { 1067b0a32e0cSBarry Smith PetscDraw draw; 1068ace3abfcSBarry Smith PetscBool isnull; 1069b0a32e0cSBarry Smith ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr); 1070*45f3bb6eSLisandro Dalcin ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr); 1071*45f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 107257b952d6SSatish Balay } 107357b952d6SSatish Balay 10747da1fb6eSBarry Smith { 107557b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 107657b952d6SSatish Balay Mat A; 107757b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1078d0f46423SBarry Smith PetscInt M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs; 10793eda8832SBarry Smith MatScalar *a; 10803e219373SBarry Smith const char *matname; 108157b952d6SSatish Balay 1082f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1083f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 1084ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr); 108557b952d6SSatish Balay if (!rank) { 1086f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr); 1087d64ed03dSBarry Smith } else { 1088f69a0ea3SMatthew Knepley ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr); 108957b952d6SSatish Balay } 1090f204ca49SKris Buschelman ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr); 10910298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr); 10922b82e772SSatish Balay ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr); 10933bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr); 109457b952d6SSatish Balay 109557b952d6SSatish Balay /* copy over the A part */ 109657b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 109757b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1098785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 109957b952d6SSatish Balay 110057b952d6SSatish Balay for (i=0; i<mbs; i++) { 1101899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 110226fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 110357b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1104899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 110557b952d6SSatish Balay for (k=0; k<bs; k++) { 110697e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1107cee3aa6bSSatish Balay col++; a += bs; 110857b952d6SSatish Balay } 110957b952d6SSatish Balay } 111057b952d6SSatish Balay } 111157b952d6SSatish Balay /* copy over the B part */ 111257b952d6SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 111357b952d6SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 111457b952d6SSatish Balay for (i=0; i<mbs; i++) { 1115899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 111626fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 111757b952d6SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 111857b952d6SSatish Balay col = baij->garray[aj[j]]*bs; 111957b952d6SSatish Balay for (k=0; k<bs; k++) { 112097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr); 1121cee3aa6bSSatish Balay col++; a += bs; 112257b952d6SSatish Balay } 112357b952d6SSatish Balay } 112457b952d6SSatish Balay } 1125606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 11266d4a8577SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 11276d4a8577SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 112855843e3eSBarry Smith /* 112955843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1130b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 113155843e3eSBarry Smith */ 11323f08860eSBarry Smith ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 1133ade3a672SBarry Smith ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr); 11343e219373SBarry Smith if (!rank) { 1135ade3a672SBarry Smith ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr); 11367da1fb6eSBarry Smith ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr); 113757b952d6SSatish Balay } 11383f08860eSBarry Smith ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr); 11391575c14dSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 11406bf464f9SBarry Smith ierr = MatDestroy(&A);CHKERRQ(ierr); 114157b952d6SSatish Balay } 11423a40ed3dSBarry Smith PetscFunctionReturn(0); 114357b952d6SSatish Balay } 114457b952d6SSatish Balay 11454a2ae208SSatish Balay #undef __FUNCT__ 1146660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary" 1147660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer) 1148660746e0SBarry Smith { 1149660746e0SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)mat->data; 1150660746e0SBarry Smith Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)a->A->data; 1151660746e0SBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)a->B->data; 1152660746e0SBarry Smith PetscErrorCode ierr; 11535f48b12bSBarry Smith PetscInt i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen; 1154e96a6426SSatish Balay PetscInt *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll; 1155660746e0SBarry Smith int fd; 1156660746e0SBarry Smith PetscScalar *column_values; 1157660746e0SBarry Smith FILE *file; 1158660746e0SBarry Smith PetscMPIInt rank,size,tag = ((PetscObject)viewer)->tag; 1159638eb2ebSBarry Smith PetscInt message_count,flowcontrolcount; 1160660746e0SBarry Smith 1161660746e0SBarry Smith PetscFunctionBegin; 1162ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr); 1163ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr); 1164660746e0SBarry Smith nz = bs2*(A->nz + B->nz); 1165660746e0SBarry Smith rlen = mat->rmap->n; 11665872f025SBarry Smith ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 1167660746e0SBarry Smith if (!rank) { 1168660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 1169660746e0SBarry Smith header[1] = mat->rmap->N; 1170660746e0SBarry Smith header[2] = mat->cmap->N; 117126fbe8dcSKarl Rupp 1172ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1173660746e0SBarry Smith ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1174660746e0SBarry Smith /* get largest number of rows any processor has */ 1175660746e0SBarry Smith range = mat->rmap->range; 1176660746e0SBarry Smith for (i=1; i<size; i++) { 1177660746e0SBarry Smith rlen = PetscMax(rlen,range[i+1] - range[i]); 1178660746e0SBarry Smith } 1179660746e0SBarry Smith } else { 1180ce94432eSBarry Smith ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1181660746e0SBarry Smith } 1182660746e0SBarry Smith 1183854ce69bSBarry Smith ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr); 1184660746e0SBarry Smith /* compute lengths of each row */ 1185660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1186660746e0SBarry Smith crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i]; 1187660746e0SBarry Smith } 1188660746e0SBarry Smith /* store the row lengths to the file */ 1189638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1190660746e0SBarry Smith if (!rank) { 1191660746e0SBarry Smith MPI_Status status; 1192785e854fSJed Brown ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr); 1193660746e0SBarry Smith rlen = (range[1] - range[0])/bs; 1194660746e0SBarry Smith for (i=0; i<rlen; i++) { 1195660746e0SBarry Smith for (j=0; j<bs; j++) { 1196660746e0SBarry Smith row_lens[i*bs+j] = bs*crow_lens[i]; 1197660746e0SBarry Smith } 1198660746e0SBarry Smith } 1199660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1200660746e0SBarry Smith for (i=1; i<size; i++) { 1201660746e0SBarry Smith rlen = (range[i+1] - range[i])/bs; 1202639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1203ce94432eSBarry Smith ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1204660746e0SBarry Smith for (k=0; k<rlen; k++) { 1205660746e0SBarry Smith for (j=0; j<bs; j++) { 1206660746e0SBarry Smith row_lens[k*bs+j] = bs*crow_lens[k]; 1207660746e0SBarry Smith } 1208660746e0SBarry Smith } 1209660746e0SBarry Smith ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1210660746e0SBarry Smith } 1211639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1212660746e0SBarry Smith ierr = PetscFree(row_lens);CHKERRQ(ierr); 1213660746e0SBarry Smith } else { 1214639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1215ce94432eSBarry Smith ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1216639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1217660746e0SBarry Smith } 1218660746e0SBarry Smith ierr = PetscFree(crow_lens);CHKERRQ(ierr); 1219660746e0SBarry Smith 1220660746e0SBarry Smith /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the 1221660746e0SBarry Smith information needed to make it for each row from a block row. This does require more communication but still not more than 1222660746e0SBarry Smith the communication needed for the nonzero values */ 1223660746e0SBarry Smith nzmax = nz; /* space a largest processor needs */ 1224ce94432eSBarry Smith ierr = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1225785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr); 1226660746e0SBarry Smith cnt = 0; 1227660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1228660746e0SBarry Smith pcnt = cnt; 1229660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1230660746e0SBarry Smith if ((col = garray[B->j[j]]) > cstart) break; 1231660746e0SBarry Smith for (l=0; l<bs; l++) { 1232660746e0SBarry Smith column_indices[cnt++] = bs*col+l; 1233660746e0SBarry Smith } 1234660746e0SBarry Smith } 1235660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1236660746e0SBarry Smith for (l=0; l<bs; l++) { 1237660746e0SBarry Smith column_indices[cnt++] = bs*(A->j[k] + cstart)+l; 1238660746e0SBarry Smith } 1239660746e0SBarry Smith } 1240660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1241660746e0SBarry Smith for (l=0; l<bs; l++) { 1242660746e0SBarry Smith column_indices[cnt++] = bs*garray[B->j[j]]+l; 1243660746e0SBarry Smith } 1244660746e0SBarry Smith } 1245660746e0SBarry Smith len = cnt - pcnt; 1246660746e0SBarry Smith for (k=1; k<bs; k++) { 1247660746e0SBarry Smith ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr); 1248660746e0SBarry Smith cnt += len; 1249660746e0SBarry Smith } 1250660746e0SBarry Smith } 1251660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1252660746e0SBarry Smith 1253660746e0SBarry Smith /* store the columns to the file */ 1254638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1255660746e0SBarry Smith if (!rank) { 1256660746e0SBarry Smith MPI_Status status; 1257660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1258660746e0SBarry Smith for (i=1; i<size; i++) { 1259639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1260ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1261ce94432eSBarry Smith ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1262660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr); 1263660746e0SBarry Smith } 1264639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1265660746e0SBarry Smith } else { 1266639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1267ce94432eSBarry Smith ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1268ce94432eSBarry Smith ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1269639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1270660746e0SBarry Smith } 1271660746e0SBarry Smith ierr = PetscFree(column_indices);CHKERRQ(ierr); 1272660746e0SBarry Smith 1273660746e0SBarry Smith /* load up the numerical values */ 1274785e854fSJed Brown ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr); 1275660746e0SBarry Smith cnt = 0; 1276660746e0SBarry Smith for (i=0; i<a->mbs; i++) { 1277660746e0SBarry Smith rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]); 1278660746e0SBarry Smith for (j=B->i[i]; j<B->i[i+1]; j++) { 1279660746e0SBarry Smith if (garray[B->j[j]] > cstart) break; 1280660746e0SBarry Smith for (l=0; l<bs; l++) { 1281660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1282660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1283660746e0SBarry Smith } 1284660746e0SBarry Smith } 1285660746e0SBarry Smith cnt += bs; 1286660746e0SBarry Smith } 1287660746e0SBarry Smith for (k=A->i[i]; k<A->i[i+1]; k++) { 1288660746e0SBarry Smith for (l=0; l<bs; l++) { 1289660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1290660746e0SBarry Smith column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll]; 1291660746e0SBarry Smith } 1292660746e0SBarry Smith } 1293660746e0SBarry Smith cnt += bs; 1294660746e0SBarry Smith } 1295660746e0SBarry Smith for (; j<B->i[i+1]; j++) { 1296660746e0SBarry Smith for (l=0; l<bs; l++) { 1297660746e0SBarry Smith for (ll=0; ll<bs; ll++) { 1298660746e0SBarry Smith column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll]; 1299660746e0SBarry Smith } 1300660746e0SBarry Smith } 1301660746e0SBarry Smith cnt += bs; 1302660746e0SBarry Smith } 1303660746e0SBarry Smith cnt += (bs-1)*rlen; 1304660746e0SBarry Smith } 1305660746e0SBarry Smith if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz); 1306660746e0SBarry Smith 1307660746e0SBarry Smith /* store the column values to the file */ 1308638eb2ebSBarry Smith ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr); 1309660746e0SBarry Smith if (!rank) { 1310660746e0SBarry Smith MPI_Status status; 1311660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1312660746e0SBarry Smith for (i=1; i<size; i++) { 1313639ff905SBarry Smith ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr); 1314ce94432eSBarry Smith ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1315ce94432eSBarry Smith ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr); 1316660746e0SBarry Smith ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr); 1317660746e0SBarry Smith } 1318639ff905SBarry Smith ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr); 1319660746e0SBarry Smith } else { 1320639ff905SBarry Smith ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr); 1321ce94432eSBarry Smith ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1322ce94432eSBarry Smith ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr); 1323639ff905SBarry Smith ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr); 1324660746e0SBarry Smith } 1325660746e0SBarry Smith ierr = PetscFree(column_values);CHKERRQ(ierr); 1326660746e0SBarry Smith 1327660746e0SBarry Smith ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr); 1328660746e0SBarry Smith if (file) { 1329660746e0SBarry Smith fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs); 1330660746e0SBarry Smith } 1331660746e0SBarry Smith PetscFunctionReturn(0); 1332660746e0SBarry Smith } 1333660746e0SBarry Smith 1334660746e0SBarry Smith #undef __FUNCT__ 13354a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ" 1336dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer) 133757b952d6SSatish Balay { 1338dfbe8321SBarry Smith PetscErrorCode ierr; 1339ace3abfcSBarry Smith PetscBool iascii,isdraw,issocket,isbinary; 134057b952d6SSatish Balay 1341d64ed03dSBarry Smith PetscFunctionBegin; 1342251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 1343251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr); 1344251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr); 1345251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr); 1346660746e0SBarry Smith if (iascii || isdraw || issocket) { 13477b2a1423SBarry Smith ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr); 1348660746e0SBarry Smith } else if (isbinary) { 1349660746e0SBarry Smith ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr); 135057b952d6SSatish Balay } 13513a40ed3dSBarry Smith PetscFunctionReturn(0); 135257b952d6SSatish Balay } 135357b952d6SSatish Balay 13544a2ae208SSatish Balay #undef __FUNCT__ 13554a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ" 1356dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) 135779bdfe76SSatish Balay { 135879bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1359dfbe8321SBarry Smith PetscErrorCode ierr; 136079bdfe76SSatish Balay 1361d64ed03dSBarry Smith PetscFunctionBegin; 1362aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1363d0f46423SBarry Smith PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N); 136479bdfe76SSatish Balay #endif 13658798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr); 13668798bf22SSatish Balay ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr); 13676bf464f9SBarry Smith ierr = MatDestroy(&baij->A);CHKERRQ(ierr); 13686bf464f9SBarry Smith ierr = MatDestroy(&baij->B);CHKERRQ(ierr); 1369aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 13706bc0bbbfSBarry Smith ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr); 137148e59246SSatish Balay #else 137205b42c5fSBarry Smith ierr = PetscFree(baij->colmap);CHKERRQ(ierr); 137348e59246SSatish Balay #endif 137405b42c5fSBarry Smith ierr = PetscFree(baij->garray);CHKERRQ(ierr); 13756bf464f9SBarry Smith ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr); 13766bf464f9SBarry Smith ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr); 1377fca92195SBarry Smith ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr); 137805b42c5fSBarry Smith ierr = PetscFree(baij->barray);CHKERRQ(ierr); 1379fca92195SBarry Smith ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr); 1380899cda47SBarry Smith ierr = PetscFree(baij->rangebs);CHKERRQ(ierr); 1381bf0cc555SLisandro Dalcin ierr = PetscFree(mat->data);CHKERRQ(ierr); 1382901853e0SKris Buschelman 1383dbd8c25aSHong Zhang ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr); 1384bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr); 1385bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr); 1386bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr); 1387bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr); 1388bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr); 1389bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr); 1390bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr); 1391bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr); 1392bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr); 13933a40ed3dSBarry Smith PetscFunctionReturn(0); 139479bdfe76SSatish Balay } 139579bdfe76SSatish Balay 13964a2ae208SSatish Balay #undef __FUNCT__ 13974a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ" 1398dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy) 1399cee3aa6bSSatish Balay { 1400cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1401dfbe8321SBarry Smith PetscErrorCode ierr; 1402b24ad042SBarry Smith PetscInt nt; 1403cee3aa6bSSatish Balay 1404d64ed03dSBarry Smith PetscFunctionBegin; 1405e1311b90SBarry Smith ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr); 1406e7e72b3dSBarry Smith if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx"); 1407e1311b90SBarry Smith ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr); 1408e7e72b3dSBarry Smith if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy"); 1409ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1410f830108cSBarry Smith ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr); 1411ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1412f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr); 14133a40ed3dSBarry Smith PetscFunctionReturn(0); 1414cee3aa6bSSatish Balay } 1415cee3aa6bSSatish Balay 14164a2ae208SSatish Balay #undef __FUNCT__ 14174a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ" 1418dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1419cee3aa6bSSatish Balay { 1420cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1421dfbe8321SBarry Smith PetscErrorCode ierr; 1422d64ed03dSBarry Smith 1423d64ed03dSBarry Smith PetscFunctionBegin; 1424ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1425f830108cSBarry Smith ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1426ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 1427f830108cSBarry Smith ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr); 14283a40ed3dSBarry Smith PetscFunctionReturn(0); 1429cee3aa6bSSatish Balay } 1430cee3aa6bSSatish Balay 14314a2ae208SSatish Balay #undef __FUNCT__ 14324a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ" 1433dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy) 1434cee3aa6bSSatish Balay { 1435cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1436dfbe8321SBarry Smith PetscErrorCode ierr; 1437ace3abfcSBarry Smith PetscBool merged; 1438cee3aa6bSSatish Balay 1439d64ed03dSBarry Smith PetscFunctionBegin; 1440a5ff213dSBarry Smith ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr); 1441cee3aa6bSSatish Balay /* do nondiagonal part */ 14427c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1443a5ff213dSBarry Smith if (!merged) { 1444cee3aa6bSSatish Balay /* send it on its way */ 1445ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1446cee3aa6bSSatish Balay /* do local part */ 14477c922b88SBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1448cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1449a5ff213dSBarry Smith /* inserted in yy until the next line */ 1450ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1451a5ff213dSBarry Smith } else { 1452a5ff213dSBarry Smith /* do local part */ 1453a5ff213dSBarry Smith ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr); 1454a5ff213dSBarry Smith /* send it on its way */ 1455ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1456a5ff213dSBarry Smith /* values actually were received in the Begin() but we need to call this nop */ 1457ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1458a5ff213dSBarry Smith } 14593a40ed3dSBarry Smith PetscFunctionReturn(0); 1460cee3aa6bSSatish Balay } 1461cee3aa6bSSatish Balay 14624a2ae208SSatish Balay #undef __FUNCT__ 14634a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ" 1464dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz) 1465cee3aa6bSSatish Balay { 1466cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1467dfbe8321SBarry Smith PetscErrorCode ierr; 1468cee3aa6bSSatish Balay 1469d64ed03dSBarry Smith PetscFunctionBegin; 1470cee3aa6bSSatish Balay /* do nondiagonal part */ 14717c922b88SBarry Smith ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr); 1472cee3aa6bSSatish Balay /* send it on its way */ 1473ca9f406cSSatish Balay ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 1474cee3aa6bSSatish Balay /* do local part */ 14757c922b88SBarry Smith ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr); 1476cee3aa6bSSatish Balay /* receive remote parts: note this assumes the values are not actually */ 1477cee3aa6bSSatish Balay /* inserted in yy until the next line, which is true for my implementation*/ 1478cee3aa6bSSatish Balay /* but is not perhaps always true. */ 1479ca9f406cSSatish Balay ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr); 14803a40ed3dSBarry Smith PetscFunctionReturn(0); 1481cee3aa6bSSatish Balay } 1482cee3aa6bSSatish Balay 1483cee3aa6bSSatish Balay /* 1484cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1485cee3aa6bSSatish Balay diagonal block 1486cee3aa6bSSatish Balay */ 14874a2ae208SSatish Balay #undef __FUNCT__ 14884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ" 1489dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v) 1490cee3aa6bSSatish Balay { 1491cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1492dfbe8321SBarry Smith PetscErrorCode ierr; 1493d64ed03dSBarry Smith 1494d64ed03dSBarry Smith PetscFunctionBegin; 1495e32f2f54SBarry Smith if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block"); 14963a40ed3dSBarry Smith ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr); 14973a40ed3dSBarry Smith PetscFunctionReturn(0); 1498cee3aa6bSSatish Balay } 1499cee3aa6bSSatish Balay 15004a2ae208SSatish Balay #undef __FUNCT__ 15014a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ" 1502f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa) 1503cee3aa6bSSatish Balay { 1504cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1505dfbe8321SBarry Smith PetscErrorCode ierr; 1506d64ed03dSBarry Smith 1507d64ed03dSBarry Smith PetscFunctionBegin; 1508f4df32b1SMatthew Knepley ierr = MatScale(a->A,aa);CHKERRQ(ierr); 1509f4df32b1SMatthew Knepley ierr = MatScale(a->B,aa);CHKERRQ(ierr); 15103a40ed3dSBarry Smith PetscFunctionReturn(0); 1511cee3aa6bSSatish Balay } 1512026e39d0SSatish Balay 15134a2ae208SSatish Balay #undef __FUNCT__ 15144a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ" 1515b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1516acdf5bf4SSatish Balay { 1517acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 151887828ca2SBarry Smith PetscScalar *vworkA,*vworkB,**pvA,**pvB,*v_p; 15196849ba73SBarry Smith PetscErrorCode ierr; 1520d0f46423SBarry Smith PetscInt bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB; 1521d0f46423SBarry Smith PetscInt nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend; 1522899cda47SBarry Smith PetscInt *cmap,*idx_p,cstart = mat->cstartbs; 1523acdf5bf4SSatish Balay 1524d64ed03dSBarry Smith PetscFunctionBegin; 1525e7e72b3dSBarry Smith if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows"); 1526e32f2f54SBarry Smith if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active"); 1527acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1528acdf5bf4SSatish Balay 1529acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1530acdf5bf4SSatish Balay /* 1531acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1532acdf5bf4SSatish Balay */ 1533acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data; 1534b24ad042SBarry Smith PetscInt max = 1,mbs = mat->mbs,tmp; 1535bd16c2feSSatish Balay for (i=0; i<mbs; i++) { 1536acdf5bf4SSatish Balay tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i]; 153726fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1538acdf5bf4SSatish Balay } 1539dcca6d9dSJed Brown ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr); 1540acdf5bf4SSatish Balay } 1541d9d09a02SSatish Balay lrow = row - brstart; 1542acdf5bf4SSatish Balay 1543acdf5bf4SSatish Balay pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB; 1544acdf5bf4SSatish Balay if (!v) {pvA = 0; pvB = 0;} 1545acdf5bf4SSatish Balay if (!idx) {pcA = 0; if (!v) pcB = 0;} 1546f830108cSBarry Smith ierr = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1547f830108cSBarry Smith ierr = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 1548acdf5bf4SSatish Balay nztot = nzA + nzB; 1549acdf5bf4SSatish Balay 1550acdf5bf4SSatish Balay cmap = mat->garray; 1551acdf5bf4SSatish Balay if (v || idx) { 1552acdf5bf4SSatish Balay if (nztot) { 1553acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1554b24ad042SBarry Smith PetscInt imark = -1; 1555acdf5bf4SSatish Balay if (v) { 1556acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1557acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 1558d9d09a02SSatish Balay if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i]; 1559acdf5bf4SSatish Balay else break; 1560acdf5bf4SSatish Balay } 1561acdf5bf4SSatish Balay imark = i; 1562acdf5bf4SSatish Balay for (i=0; i<nzA; i++) v_p[imark+i] = vworkA[i]; 1563acdf5bf4SSatish Balay for (i=imark; i<nzB; i++) v_p[nzA+i] = vworkB[i]; 1564acdf5bf4SSatish Balay } 1565acdf5bf4SSatish Balay if (idx) { 1566acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1567acdf5bf4SSatish Balay if (imark > -1) { 1568acdf5bf4SSatish Balay for (i=0; i<imark; i++) { 1569bd16c2feSSatish Balay idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1570acdf5bf4SSatish Balay } 1571acdf5bf4SSatish Balay } else { 1572acdf5bf4SSatish Balay for (i=0; i<nzB; i++) { 157326fbe8dcSKarl Rupp if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs; 1574acdf5bf4SSatish Balay else break; 1575acdf5bf4SSatish Balay } 1576acdf5bf4SSatish Balay imark = i; 1577acdf5bf4SSatish Balay } 1578d9d09a02SSatish Balay for (i=0; i<nzA; i++) idx_p[imark+i] = cstart*bs + cworkA[i]; 1579d9d09a02SSatish Balay for (i=imark; i<nzB; i++) idx_p[nzA+i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ; 1580acdf5bf4SSatish Balay } 1581d64ed03dSBarry Smith } else { 1582d212a18eSSatish Balay if (idx) *idx = 0; 1583d212a18eSSatish Balay if (v) *v = 0; 1584d212a18eSSatish Balay } 1585acdf5bf4SSatish Balay } 1586acdf5bf4SSatish Balay *nz = nztot; 1587f830108cSBarry Smith ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr); 1588f830108cSBarry Smith ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr); 15893a40ed3dSBarry Smith PetscFunctionReturn(0); 1590acdf5bf4SSatish Balay } 1591acdf5bf4SSatish Balay 15924a2ae208SSatish Balay #undef __FUNCT__ 15934a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ" 1594b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v) 1595acdf5bf4SSatish Balay { 1596acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 1597d64ed03dSBarry Smith 1598d64ed03dSBarry Smith PetscFunctionBegin; 1599e7e72b3dSBarry Smith if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called"); 1600acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 16013a40ed3dSBarry Smith PetscFunctionReturn(0); 1602acdf5bf4SSatish Balay } 1603acdf5bf4SSatish Balay 16044a2ae208SSatish Balay #undef __FUNCT__ 16054a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ" 1606dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) 160758667388SSatish Balay { 160858667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 1609dfbe8321SBarry Smith PetscErrorCode ierr; 1610d64ed03dSBarry Smith 1611d64ed03dSBarry Smith PetscFunctionBegin; 161258667388SSatish Balay ierr = MatZeroEntries(l->A);CHKERRQ(ierr); 161358667388SSatish Balay ierr = MatZeroEntries(l->B);CHKERRQ(ierr); 16143a40ed3dSBarry Smith PetscFunctionReturn(0); 161558667388SSatish Balay } 16160ac07820SSatish Balay 16174a2ae208SSatish Balay #undef __FUNCT__ 16184a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ" 1619dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info) 16200ac07820SSatish Balay { 16214e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)matin->data; 16224e220ebcSLois Curfman McInnes Mat A = a->A,B = a->B; 1623dfbe8321SBarry Smith PetscErrorCode ierr; 1624329f5518SBarry Smith PetscReal isend[5],irecv[5]; 16250ac07820SSatish Balay 1626d64ed03dSBarry Smith PetscFunctionBegin; 1627d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 162826fbe8dcSKarl Rupp 16294e220ebcSLois Curfman McInnes ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr); 163026fbe8dcSKarl Rupp 16310e4b21beSBarry Smith isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded; 1632de87f314SBarry Smith isend[3] = info->memory; isend[4] = info->mallocs; 163326fbe8dcSKarl Rupp 16344e220ebcSLois Curfman McInnes ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr); 163526fbe8dcSKarl Rupp 16360e4b21beSBarry Smith isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded; 1637de87f314SBarry Smith isend[3] += info->memory; isend[4] += info->mallocs; 163826fbe8dcSKarl Rupp 16390ac07820SSatish Balay if (flag == MAT_LOCAL) { 16404e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 16414e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 16424e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 16434e220ebcSLois Curfman McInnes info->memory = isend[3]; 16444e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 16450ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 1646b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 164726fbe8dcSKarl Rupp 16484e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16494e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16504e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16514e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16524e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 16530ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 1654b2566f29SBarry Smith ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr); 165526fbe8dcSKarl Rupp 16564e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 16574e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 16584e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 16594e220ebcSLois Curfman McInnes info->memory = irecv[3]; 16604e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 1661ce94432eSBarry Smith } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag); 16624e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 16634e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 16644e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 16653a40ed3dSBarry Smith PetscFunctionReturn(0); 16660ac07820SSatish Balay } 16670ac07820SSatish Balay 16684a2ae208SSatish Balay #undef __FUNCT__ 16694a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ" 1670ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg) 167158667388SSatish Balay { 167258667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 1673dfbe8321SBarry Smith PetscErrorCode ierr; 167458667388SSatish Balay 1675d64ed03dSBarry Smith PetscFunctionBegin; 167612c028f9SKris Buschelman switch (op) { 1677512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 167812c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 167928b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1680a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 168112c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 168243674050SBarry Smith MatCheckPreallocated(A,1); 16834e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16844e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 168512c028f9SKris Buschelman break; 168612c028f9SKris Buschelman case MAT_ROW_ORIENTED: 168743674050SBarry Smith MatCheckPreallocated(A,1); 16884e0d8c25SBarry Smith a->roworiented = flg; 168926fbe8dcSKarl Rupp 16904e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 16914e0d8c25SBarry Smith ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr); 169212c028f9SKris Buschelman break; 16934e0d8c25SBarry Smith case MAT_NEW_DIAGONALS: 1694290bbb0aSBarry Smith ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr); 169512c028f9SKris Buschelman break; 169612c028f9SKris Buschelman case MAT_IGNORE_OFF_PROC_ENTRIES: 16974e0d8c25SBarry Smith a->donotstash = flg; 169812c028f9SKris Buschelman break; 169912c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 17004e0d8c25SBarry Smith a->ht_flag = flg; 170112c028f9SKris Buschelman break; 170277e54ba9SKris Buschelman case MAT_SYMMETRIC: 170377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 17042188ac68SBarry Smith case MAT_HERMITIAN: 17052188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 170643674050SBarry Smith MatCheckPreallocated(A,1); 17074e0d8c25SBarry Smith ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr); 170877e54ba9SKris Buschelman break; 170912c028f9SKris Buschelman default: 1710ce94432eSBarry Smith SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op); 1711d64ed03dSBarry Smith } 17123a40ed3dSBarry Smith PetscFunctionReturn(0); 171358667388SSatish Balay } 171458667388SSatish Balay 17154a2ae208SSatish Balay #undef __FUNCT__ 17166a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ" 1717fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout) 17180ac07820SSatish Balay { 17190ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; 17200ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 17210ac07820SSatish Balay Mat B; 1722dfbe8321SBarry Smith PetscErrorCode ierr; 1723d0f46423SBarry Smith PetscInt M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col; 1724d0f46423SBarry Smith PetscInt bs=A->rmap->bs,mbs=baij->mbs; 17253eda8832SBarry Smith MatScalar *a; 17260ac07820SSatish Balay 1727d64ed03dSBarry Smith PetscFunctionBegin; 1728ce94432eSBarry Smith if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place"); 1729fc4dec0aSBarry Smith if (reuse == MAT_INITIAL_MATRIX || *matout == A) { 1730ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 1731d0f46423SBarry Smith ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr); 17327adad957SLisandro Dalcin ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr); 17332e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 17340298fd71SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr); 1735fc4dec0aSBarry Smith } else { 1736fc4dec0aSBarry Smith B = *matout; 1737fc4dec0aSBarry Smith } 17380ac07820SSatish Balay 17390ac07820SSatish Balay /* copy over the A part */ 17400ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->A->data; 17410ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 1742785e854fSJed Brown ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr); 17430ac07820SSatish Balay 17440ac07820SSatish Balay for (i=0; i<mbs; i++) { 1745899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 174626fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 17470ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 1748899cda47SBarry Smith col = (baij->cstartbs+aj[j])*bs; 17490ac07820SSatish Balay for (k=0; k<bs; k++) { 175097e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 175126fbe8dcSKarl Rupp 17520ac07820SSatish Balay col++; a += bs; 17530ac07820SSatish Balay } 17540ac07820SSatish Balay } 17550ac07820SSatish Balay } 17560ac07820SSatish Balay /* copy over the B part */ 17570ac07820SSatish Balay Aloc = (Mat_SeqBAIJ*)baij->B->data; 17580ac07820SSatish Balay ai = Aloc->i; aj = Aloc->j; a = Aloc->a; 17590ac07820SSatish Balay for (i=0; i<mbs; i++) { 1760899cda47SBarry Smith rvals[0] = bs*(baij->rstartbs + i); 176126fbe8dcSKarl Rupp for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1; 17620ac07820SSatish Balay for (j=ai[i]; j<ai[i+1]; j++) { 17630ac07820SSatish Balay col = baij->garray[aj[j]]*bs; 17640ac07820SSatish Balay for (k=0; k<bs; k++) { 176597e5c40aSBarry Smith ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr); 176626fbe8dcSKarl Rupp col++; 176726fbe8dcSKarl Rupp a += bs; 17680ac07820SSatish Balay } 17690ac07820SSatish Balay } 17700ac07820SSatish Balay } 1771606d414cSSatish Balay ierr = PetscFree(rvals);CHKERRQ(ierr); 17720ac07820SSatish Balay ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17730ac07820SSatish Balay ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 17740ac07820SSatish Balay 177526fbe8dcSKarl Rupp if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B; 177626fbe8dcSKarl Rupp else { 177728be2f97SBarry Smith ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr); 17780ac07820SSatish Balay } 17793a40ed3dSBarry Smith PetscFunctionReturn(0); 17800ac07820SSatish Balay } 17810e95ebc0SSatish Balay 17824a2ae208SSatish Balay #undef __FUNCT__ 17834a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ" 1784dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr) 17850e95ebc0SSatish Balay { 178636c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 178736c4a09eSSatish Balay Mat a = baij->A,b = baij->B; 1788dfbe8321SBarry Smith PetscErrorCode ierr; 1789b24ad042SBarry Smith PetscInt s1,s2,s3; 17900e95ebc0SSatish Balay 1791d64ed03dSBarry Smith PetscFunctionBegin; 179236c4a09eSSatish Balay ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr); 179336c4a09eSSatish Balay if (rr) { 179436c4a09eSSatish Balay ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr); 1795e32f2f54SBarry Smith if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size"); 179636c4a09eSSatish Balay /* Overlap communication with computation. */ 1797ca9f406cSSatish Balay ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 179836c4a09eSSatish Balay } 17990e95ebc0SSatish Balay if (ll) { 18000e95ebc0SSatish Balay ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr); 1801e32f2f54SBarry Smith if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size"); 18020298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr); 18030e95ebc0SSatish Balay } 180436c4a09eSSatish Balay /* scale the diagonal block */ 180536c4a09eSSatish Balay ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr); 180636c4a09eSSatish Balay 180736c4a09eSSatish Balay if (rr) { 180836c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 1809ca9f406cSSatish Balay ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 18100298fd71SBarry Smith ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr); 181136c4a09eSSatish Balay } 18123a40ed3dSBarry Smith PetscFunctionReturn(0); 18130e95ebc0SSatish Balay } 18140e95ebc0SSatish Balay 18154a2ae208SSatish Balay #undef __FUNCT__ 18164a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ" 18172b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 18180ac07820SSatish Balay { 18190ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *) A->data; 182065a92638SMatthew G. Knepley PetscInt *owners = A->rmap->range; 182165a92638SMatthew G. Knepley PetscInt n = A->rmap->n; 182265a92638SMatthew G. Knepley PetscSF sf; 182365a92638SMatthew G. Knepley PetscInt *lrows; 182465a92638SMatthew G. Knepley PetscSFNode *rrows; 182569ea2d38SJed Brown PetscInt r, p = 0, len = 0; 18266849ba73SBarry Smith PetscErrorCode ierr; 18270ac07820SSatish Balay 1828d64ed03dSBarry Smith PetscFunctionBegin; 182965a92638SMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 1830785e854fSJed Brown ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 183165a92638SMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 1832a34163a4SJed Brown if (!A->nooffproczerorows) {ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);} 183365a92638SMatthew G. Knepley for (r = 0; r < N; ++r) { 183465a92638SMatthew G. Knepley const PetscInt idx = rows[r]; 183569ea2d38SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 183669ea2d38SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 183769ea2d38SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 183869ea2d38SJed Brown } 1839a34163a4SJed Brown if (A->nooffproczerorows) { 1840a34163a4SJed Brown if (p != l->rank) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"MAT_NO_OFF_PROC_ZERO_ROWS set, but row %D is not owned by rank %d",idx,l->rank); 1841a34163a4SJed Brown lrows[len++] = idx - owners[p]; 1842a34163a4SJed Brown } else { 184365a92638SMatthew G. Knepley rrows[r].rank = p; 184465a92638SMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 18450ac07820SSatish Balay } 1846a34163a4SJed Brown } 1847a34163a4SJed Brown if (!A->nooffproczerorows) { 184865a92638SMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 184965a92638SMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 185065a92638SMatthew G. Knepley /* Collect flags for rows to be zeroed */ 185165a92638SMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 185265a92638SMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 185365a92638SMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 185465a92638SMatthew G. Knepley /* Compress and put in row numbers */ 185565a92638SMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 1856a34163a4SJed Brown } 185797b48c8fSBarry Smith /* fix right hand side if needed */ 185897b48c8fSBarry Smith if (x && b) { 185965a92638SMatthew G. Knepley const PetscScalar *xx; 186065a92638SMatthew G. Knepley PetscScalar *bb; 186165a92638SMatthew G. Knepley 186297b48c8fSBarry Smith ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr); 186397b48c8fSBarry Smith ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 186465a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]]; 186597b48c8fSBarry Smith ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr); 186697b48c8fSBarry Smith ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 186797b48c8fSBarry Smith } 186897b48c8fSBarry Smith 18690ac07820SSatish Balay /* actually zap the local rows */ 187072dacd9aSBarry Smith /* 187172dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1872a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 187372dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 187472dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 187572dacd9aSBarry Smith 187672dacd9aSBarry Smith */ 18779c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 1878a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1879d0f46423SBarry Smith if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) { 1880a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr); 1881f4df32b1SMatthew Knepley } else if (diag != 0.0) { 188265a92638SMatthew G. Knepley ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr); 1883e7e72b3dSBarry Smith if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1884512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 188565a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 188665a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 1887f4df32b1SMatthew Knepley ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr); 1888a07cd24cSSatish Balay } 1889a07cd24cSSatish Balay ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 1890a07cd24cSSatish Balay ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 18919c957beeSSatish Balay } else { 1892a34163a4SJed Brown ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr); 1893a07cd24cSSatish Balay } 1894606d414cSSatish Balay ierr = PetscFree(lrows);CHKERRQ(ierr); 18954f9cfa9eSBarry Smith 18964f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 18974f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 1898e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1899b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 1900e56f5c9eSBarry Smith } 19013a40ed3dSBarry Smith PetscFunctionReturn(0); 19020ac07820SSatish Balay } 190372dacd9aSBarry Smith 19044a2ae208SSatish Balay #undef __FUNCT__ 19056f0a72daSMatthew G. Knepley #define __FUNCT__ "MatZeroRowsColumns_MPIBAIJ" 19066f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b) 19076f0a72daSMatthew G. Knepley { 19086f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ*)A->data; 19096f0a72daSMatthew G. Knepley PetscErrorCode ierr; 19105ba17502SJed Brown PetscMPIInt n = A->rmap->n; 1911fbb64d0eSMatthew G. Knepley PetscInt i,j,k,r,p = 0,len = 0,row,col,count; 19126f0a72daSMatthew G. Knepley PetscInt *lrows,*owners = A->rmap->range; 19136f0a72daSMatthew G. Knepley PetscSFNode *rrows; 19146f0a72daSMatthew G. Knepley PetscSF sf; 19156f0a72daSMatthew G. Knepley const PetscScalar *xx; 19166f0a72daSMatthew G. Knepley PetscScalar *bb,*mask; 19176f0a72daSMatthew G. Knepley Vec xmask,lmask; 19186f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ*)l->B->data; 19196f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 19206f0a72daSMatthew G. Knepley PetscScalar *aa; 19216f0a72daSMatthew G. Knepley 19226f0a72daSMatthew G. Knepley PetscFunctionBegin; 19236f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 19246f0a72daSMatthew G. Knepley ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr); 19256f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 19266f0a72daSMatthew G. Knepley ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr); 19276f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 19286f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 19295ba17502SJed Brown if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N); 19305ba17502SJed Brown if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */ 19315ba17502SJed Brown ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr); 19325ba17502SJed Brown } 19336f0a72daSMatthew G. Knepley rrows[r].rank = p; 19346f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 19356f0a72daSMatthew G. Knepley } 19366f0a72daSMatthew G. Knepley ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr); 19376f0a72daSMatthew G. Knepley ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr); 19386f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 19396f0a72daSMatthew G. Knepley ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 19406f0a72daSMatthew G. Knepley ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr); 19416f0a72daSMatthew G. Knepley ierr = PetscSFDestroy(&sf);CHKERRQ(ierr); 19426f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 19436f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r; 19446f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 19456f0a72daSMatthew G. Knepley ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr); 19466f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 19472a7a6963SBarry Smith ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr); 19486f0a72daSMatthew G. Knepley ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr); 19496f0a72daSMatthew G. Knepley ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr); 19506f0a72daSMatthew G. Knepley for (i=0; i<len; i++) bb[lrows[i]] = 1; 19516f0a72daSMatthew G. Knepley ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr); 19526f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 19536f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 19546f0a72daSMatthew G. Knepley ierr = VecDestroy(&xmask);CHKERRQ(ierr); 19556f0a72daSMatthew G. Knepley if (x) { 19566f0a72daSMatthew G. Knepley ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 19576f0a72daSMatthew G. Knepley ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 19586f0a72daSMatthew G. Knepley ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr); 19596f0a72daSMatthew G. Knepley ierr = VecGetArray(b,&bb);CHKERRQ(ierr); 19606f0a72daSMatthew G. Knepley } 19616f0a72daSMatthew G. Knepley ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr); 19626f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 19636f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 19646f0a72daSMatthew G. Knepley row = lrows[i]; 19656f0a72daSMatthew G. Knepley count = (baij->i[row/bs +1] - baij->i[row/bs])*bs; 19666f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs); 19676f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 19686f0a72daSMatthew G. Knepley aa[0] = 0.0; 19696f0a72daSMatthew G. Knepley aa += bs; 19706f0a72daSMatthew G. Knepley } 19716f0a72daSMatthew G. Knepley } 19726f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 19736f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 19746f0a72daSMatthew G. Knepley row = i/bs; 19756f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row+1]; ++j) { 19766f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 19776f0a72daSMatthew G. Knepley col = bs*baij->j[j] + k; 19786f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 19796f0a72daSMatthew G. Knepley aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k; 19806f0a72daSMatthew G. Knepley if (b) bb[i] -= aa[0]*xx[col]; 19816f0a72daSMatthew G. Knepley aa[0] = 0.0; 19826f0a72daSMatthew G. Knepley } 19836f0a72daSMatthew G. Knepley } 19846f0a72daSMatthew G. Knepley } 19856f0a72daSMatthew G. Knepley } 19866f0a72daSMatthew G. Knepley if (x) { 19876f0a72daSMatthew G. Knepley ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr); 19886f0a72daSMatthew G. Knepley ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr); 19896f0a72daSMatthew G. Knepley } 19906f0a72daSMatthew G. Knepley ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr); 19916f0a72daSMatthew G. Knepley ierr = VecDestroy(&lmask);CHKERRQ(ierr); 19926f0a72daSMatthew G. Knepley ierr = PetscFree(lrows);CHKERRQ(ierr); 19934f9cfa9eSBarry Smith 19944f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 19954f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) { 19964f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 1997b2566f29SBarry Smith ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 19984f9cfa9eSBarry Smith } 19996f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 20006f0a72daSMatthew G. Knepley } 20016f0a72daSMatthew G. Knepley 20026f0a72daSMatthew G. Knepley #undef __FUNCT__ 20034a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ" 2004dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) 2005bb5a7306SBarry Smith { 2006bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2007dfbe8321SBarry Smith PetscErrorCode ierr; 2008d64ed03dSBarry Smith 2009d64ed03dSBarry Smith PetscFunctionBegin; 2010bb5a7306SBarry Smith ierr = MatSetUnfactored(a->A);CHKERRQ(ierr); 20113a40ed3dSBarry Smith PetscFunctionReturn(0); 2012bb5a7306SBarry Smith } 2013bb5a7306SBarry Smith 20146849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*); 20150ac07820SSatish Balay 20164a2ae208SSatish Balay #undef __FUNCT__ 20174a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ" 2018ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool *flag) 20197fc3c18eSBarry Smith { 20207fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data; 20217fc3c18eSBarry Smith Mat a,b,c,d; 2022ace3abfcSBarry Smith PetscBool flg; 2023dfbe8321SBarry Smith PetscErrorCode ierr; 20247fc3c18eSBarry Smith 20257fc3c18eSBarry Smith PetscFunctionBegin; 20267fc3c18eSBarry Smith a = matA->A; b = matA->B; 20277fc3c18eSBarry Smith c = matB->A; d = matB->B; 20287fc3c18eSBarry Smith 20297fc3c18eSBarry Smith ierr = MatEqual(a,c,&flg);CHKERRQ(ierr); 2030abc0a331SBarry Smith if (flg) { 20317fc3c18eSBarry Smith ierr = MatEqual(b,d,&flg);CHKERRQ(ierr); 20327fc3c18eSBarry Smith } 2033b2566f29SBarry Smith ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 20347fc3c18eSBarry Smith PetscFunctionReturn(0); 20357fc3c18eSBarry Smith } 20367fc3c18eSBarry Smith 20373c896bc6SHong Zhang #undef __FUNCT__ 20383c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ" 20393c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str) 20403c896bc6SHong Zhang { 20413c896bc6SHong Zhang PetscErrorCode ierr; 20423c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 20433c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 20443c896bc6SHong Zhang 20453c896bc6SHong Zhang PetscFunctionBegin; 20463c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 20473c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 20483c896bc6SHong Zhang ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr); 20493c896bc6SHong Zhang } else { 20503c896bc6SHong Zhang ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr); 20513c896bc6SHong Zhang ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr); 20523c896bc6SHong Zhang } 20533c896bc6SHong Zhang PetscFunctionReturn(0); 20543c896bc6SHong Zhang } 2055273d9f13SBarry Smith 20564a2ae208SSatish Balay #undef __FUNCT__ 20574994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ" 20584994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A) 2059273d9f13SBarry Smith { 2060dfbe8321SBarry Smith PetscErrorCode ierr; 2061273d9f13SBarry Smith 2062273d9f13SBarry Smith PetscFunctionBegin; 2063535b19f3SBarry Smith ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr); 2064273d9f13SBarry Smith PetscFunctionReturn(0); 2065273d9f13SBarry Smith } 2066273d9f13SBarry Smith 20674fe895cdSHong Zhang #undef __FUNCT__ 20684de5dceeSHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_MPIBAIJ" 20694de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz) 20704de5dceeSHong Zhang { 2071001ddc4fSHong Zhang PetscErrorCode ierr; 2072001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs,m = Y->rmap->N/bs; 20734de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ*)X->data; 20744de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ*)Y->data; 20754de5dceeSHong Zhang 20764de5dceeSHong Zhang PetscFunctionBegin; 2077001ddc4fSHong Zhang ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr); 20784de5dceeSHong Zhang PetscFunctionReturn(0); 20794de5dceeSHong Zhang } 20804de5dceeSHong Zhang 20814de5dceeSHong Zhang #undef __FUNCT__ 20824fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ" 20834fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str) 20844fe895cdSHong Zhang { 20854fe895cdSHong Zhang PetscErrorCode ierr; 20864fe895cdSHong Zhang Mat_MPIBAIJ *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data; 20874fe895cdSHong Zhang PetscBLASInt bnz,one=1; 20884fe895cdSHong Zhang Mat_SeqBAIJ *x,*y; 20894fe895cdSHong Zhang 20904fe895cdSHong Zhang PetscFunctionBegin; 20914fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 20924fe895cdSHong Zhang PetscScalar alpha = a; 20934fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->A->data; 20944fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->A->data; 2095c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 20968b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 20974fe895cdSHong Zhang x = (Mat_SeqBAIJ*)xx->B->data; 20984fe895cdSHong Zhang y = (Mat_SeqBAIJ*)yy->B->data; 2099c5df96a5SBarry Smith ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr); 21008b83055fSJed Brown PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one)); 2101a3fa217bSJose E. Roman ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr); 2102ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 2103ab784542SHong Zhang ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr); 21044fe895cdSHong Zhang } else { 21054de5dceeSHong Zhang Mat B; 21064de5dceeSHong Zhang PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs; 21074de5dceeSHong Zhang ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr); 21084de5dceeSHong Zhang ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr); 21094de5dceeSHong Zhang ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr); 21104de5dceeSHong Zhang ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr); 21114de5dceeSHong Zhang ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr); 21124de5dceeSHong Zhang ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr); 21134de5dceeSHong Zhang ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr); 21144de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr); 21154de5dceeSHong Zhang ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr); 21164de5dceeSHong Zhang ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr); 21174de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 21184de5dceeSHong Zhang ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr); 211928be2f97SBarry Smith ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr); 21204de5dceeSHong Zhang ierr = PetscFree(nnz_d);CHKERRQ(ierr); 21214de5dceeSHong Zhang ierr = PetscFree(nnz_o);CHKERRQ(ierr); 21224fe895cdSHong Zhang } 21234fe895cdSHong Zhang PetscFunctionReturn(0); 21244fe895cdSHong Zhang } 21254fe895cdSHong Zhang 212699cafbc1SBarry Smith #undef __FUNCT__ 212799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ" 212899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A) 212999cafbc1SBarry Smith { 213099cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 213199cafbc1SBarry Smith PetscErrorCode ierr; 213299cafbc1SBarry Smith 213399cafbc1SBarry Smith PetscFunctionBegin; 213499cafbc1SBarry Smith ierr = MatRealPart(a->A);CHKERRQ(ierr); 213599cafbc1SBarry Smith ierr = MatRealPart(a->B);CHKERRQ(ierr); 213699cafbc1SBarry Smith PetscFunctionReturn(0); 213799cafbc1SBarry Smith } 213899cafbc1SBarry Smith 213999cafbc1SBarry Smith #undef __FUNCT__ 214099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ" 214199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) 214299cafbc1SBarry Smith { 214399cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 214499cafbc1SBarry Smith PetscErrorCode ierr; 214599cafbc1SBarry Smith 214699cafbc1SBarry Smith PetscFunctionBegin; 214799cafbc1SBarry Smith ierr = MatImaginaryPart(a->A);CHKERRQ(ierr); 214899cafbc1SBarry Smith ierr = MatImaginaryPart(a->B);CHKERRQ(ierr); 214999cafbc1SBarry Smith PetscFunctionReturn(0); 215099cafbc1SBarry Smith } 215199cafbc1SBarry Smith 215282094794SBarry Smith #undef __FUNCT__ 215382094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ" 21544aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat) 21554aa3045dSJed Brown { 21564aa3045dSJed Brown PetscErrorCode ierr; 21574aa3045dSJed Brown IS iscol_local; 21584aa3045dSJed Brown PetscInt csize; 21594aa3045dSJed Brown 21604aa3045dSJed Brown PetscFunctionBegin; 21614aa3045dSJed Brown ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr); 2162b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 2163b79d0421SJed Brown ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr); 2164e32f2f54SBarry Smith if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 2165b79d0421SJed Brown } else { 21664aa3045dSJed Brown ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr); 2167b79d0421SJed Brown } 21684aa3045dSJed Brown ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr); 2169b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 2170b79d0421SJed Brown ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr); 21716bf464f9SBarry Smith ierr = ISDestroy(&iscol_local);CHKERRQ(ierr); 2172b79d0421SJed Brown } 21734aa3045dSJed Brown PetscFunctionReturn(0); 21744aa3045dSJed Brown } 217529dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*); 21764aa3045dSJed Brown #undef __FUNCT__ 2177dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private" 217882094794SBarry Smith /* 217982094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 218082094794SBarry Smith in local and then by concatenating the local matrices the end result. 21818f46ffcaSHong Zhang Writing it directly would be much like MatGetSubMatrices_MPIBAIJ(). 21828f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 218382094794SBarry Smith */ 21844aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat) 218582094794SBarry Smith { 218682094794SBarry Smith PetscErrorCode ierr; 218782094794SBarry Smith PetscMPIInt rank,size; 218882094794SBarry Smith PetscInt i,m,n,rstart,row,rend,nz,*cwork,j,bs; 218929dcf524SDmitry Karpeev PetscInt *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow; 219029dcf524SDmitry Karpeev Mat M,Mreuse; 219182094794SBarry Smith MatScalar *vwork,*aa; 2192ce94432eSBarry Smith MPI_Comm comm; 219329dcf524SDmitry Karpeev IS isrow_new, iscol_new; 219429dcf524SDmitry Karpeev PetscBool idflag,allrows, allcols; 219582094794SBarry Smith Mat_SeqBAIJ *aij; 219682094794SBarry Smith 219782094794SBarry Smith PetscFunctionBegin; 2198ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr); 219982094794SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 220082094794SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 220129dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 220229dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 220329dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr); 220429dcf524SDmitry Karpeev ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr); 220582094794SBarry Smith 220629dcf524SDmitry Karpeev /* Check for special case: each processor gets entire matrix columns */ 220729dcf524SDmitry Karpeev ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr); 220829dcf524SDmitry Karpeev ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr); 220926fbe8dcSKarl Rupp if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE; 221026fbe8dcSKarl Rupp else allcols = PETSC_FALSE; 221129dcf524SDmitry Karpeev 221229dcf524SDmitry Karpeev ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr); 221329dcf524SDmitry Karpeev ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr); 221426fbe8dcSKarl Rupp if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE; 221526fbe8dcSKarl Rupp else allrows = PETSC_FALSE; 221626fbe8dcSKarl Rupp 221782094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 221882094794SBarry Smith ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr); 2219e32f2f54SBarry Smith if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse"); 222075f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 222182094794SBarry Smith } else { 222275f6568bSJed Brown ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr); 222382094794SBarry Smith } 222429dcf524SDmitry Karpeev ierr = ISDestroy(&isrow_new);CHKERRQ(ierr); 222529dcf524SDmitry Karpeev ierr = ISDestroy(&iscol_new);CHKERRQ(ierr); 222682094794SBarry Smith /* 222782094794SBarry Smith m - number of local rows 222882094794SBarry Smith n - number of columns (same on all processors) 222982094794SBarry Smith rstart - first row in new global matrix generated 223082094794SBarry Smith */ 223182094794SBarry Smith ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr); 223282094794SBarry Smith ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr); 223382094794SBarry Smith m = m/bs; 223482094794SBarry Smith n = n/bs; 223582094794SBarry Smith 223682094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 223782094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 223882094794SBarry Smith ii = aij->i; 223982094794SBarry Smith jj = aij->j; 224082094794SBarry Smith 224182094794SBarry Smith /* 224282094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 224382094794SBarry Smith portions of the matrix in order to do correct preallocation 224482094794SBarry Smith */ 224582094794SBarry Smith 224682094794SBarry Smith /* first get start and end of "diagonal" columns */ 224782094794SBarry Smith if (csize == PETSC_DECIDE) { 224882094794SBarry Smith ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr); 224982094794SBarry Smith if (mglobal == n*bs) { /* square matrix */ 225082094794SBarry Smith nlocal = m; 225182094794SBarry Smith } else { 225282094794SBarry Smith nlocal = n/size + ((n % size) > rank); 225382094794SBarry Smith } 225482094794SBarry Smith } else { 225582094794SBarry Smith nlocal = csize/bs; 225682094794SBarry Smith } 225782094794SBarry Smith ierr = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 225882094794SBarry Smith rstart = rend - nlocal; 225965e19b50SBarry Smith if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n); 226082094794SBarry Smith 226182094794SBarry Smith /* next, compute all the lengths */ 2262dcca6d9dSJed Brown ierr = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr); 226382094794SBarry Smith for (i=0; i<m; i++) { 226482094794SBarry Smith jend = ii[i+1] - ii[i]; 226582094794SBarry Smith olen = 0; 226682094794SBarry Smith dlen = 0; 226782094794SBarry Smith for (j=0; j<jend; j++) { 226882094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 226982094794SBarry Smith else dlen++; 227082094794SBarry Smith jj++; 227182094794SBarry Smith } 227282094794SBarry Smith olens[i] = olen; 227382094794SBarry Smith dlens[i] = dlen; 227482094794SBarry Smith } 227582094794SBarry Smith ierr = MatCreate(comm,&M);CHKERRQ(ierr); 227682094794SBarry Smith ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr); 227782094794SBarry Smith ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr); 227882094794SBarry Smith ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 22798f46ffcaSHong Zhang ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr); 2280eb9baa12SBarry Smith ierr = PetscFree2(dlens,olens);CHKERRQ(ierr); 228182094794SBarry Smith } else { 228282094794SBarry Smith PetscInt ml,nl; 228382094794SBarry Smith 228482094794SBarry Smith M = *newmat; 228582094794SBarry Smith ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr); 2286e32f2f54SBarry Smith if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request"); 228782094794SBarry Smith ierr = MatZeroEntries(M);CHKERRQ(ierr); 228882094794SBarry Smith /* 228982094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 229082094794SBarry Smith rather than the slower MatSetValues(). 229182094794SBarry Smith */ 229282094794SBarry Smith M->was_assembled = PETSC_TRUE; 229382094794SBarry Smith M->assembled = PETSC_FALSE; 229482094794SBarry Smith } 229582094794SBarry Smith ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 229682094794SBarry Smith ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr); 229782094794SBarry Smith aij = (Mat_SeqBAIJ*)(Mreuse)->data; 229882094794SBarry Smith ii = aij->i; 229982094794SBarry Smith jj = aij->j; 230082094794SBarry Smith aa = aij->a; 230182094794SBarry Smith for (i=0; i<m; i++) { 230282094794SBarry Smith row = rstart/bs + i; 230382094794SBarry Smith nz = ii[i+1] - ii[i]; 230482094794SBarry Smith cwork = jj; jj += nz; 230575f6568bSJed Brown vwork = aa; aa += nz*bs*bs; 230682094794SBarry Smith ierr = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr); 230782094794SBarry Smith } 230882094794SBarry Smith 230982094794SBarry Smith ierr = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 231082094794SBarry Smith ierr = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 231182094794SBarry Smith *newmat = M; 231282094794SBarry Smith 231382094794SBarry Smith /* save submatrix used in processor for next request */ 231482094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 231582094794SBarry Smith ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr); 231682094794SBarry Smith ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr); 231782094794SBarry Smith } 231882094794SBarry Smith PetscFunctionReturn(0); 231982094794SBarry Smith } 232082094794SBarry Smith 232182094794SBarry Smith #undef __FUNCT__ 232282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ" 232382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B) 232482094794SBarry Smith { 232582094794SBarry Smith MPI_Comm comm,pcomm; 2326a0a83eb5SRémi Lacroix PetscInt clocal_size,nrows; 232782094794SBarry Smith const PetscInt *rows; 2328dbf0e21dSBarry Smith PetscMPIInt size; 2329a0a83eb5SRémi Lacroix IS crowp,lcolp; 233082094794SBarry Smith PetscErrorCode ierr; 233182094794SBarry Smith 233282094794SBarry Smith PetscFunctionBegin; 233382094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr); 233482094794SBarry Smith /* make a collective version of 'rowp' */ 233582094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr); 233682094794SBarry Smith if (pcomm==comm) { 233782094794SBarry Smith crowp = rowp; 233882094794SBarry Smith } else { 233982094794SBarry Smith ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr); 234082094794SBarry Smith ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr); 234170b3c8c7SBarry Smith ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr); 234282094794SBarry Smith ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr); 234382094794SBarry Smith } 2344a0a83eb5SRémi Lacroix ierr = ISSetPermutation(crowp);CHKERRQ(ierr); 2345a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 234682094794SBarry Smith ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr); 2347dbf0e21dSBarry Smith ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr); 2348dbf0e21dSBarry Smith if (size==1) { 234982094794SBarry Smith lcolp = colp; 235082094794SBarry Smith } else { 235175f6568bSJed Brown ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr); 235282094794SBarry Smith } 2353dbf0e21dSBarry Smith ierr = ISSetPermutation(lcolp);CHKERRQ(ierr); 235475f6568bSJed Brown /* now we just get the submatrix */ 23557afc1a8bSJed Brown ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr); 2356a0a83eb5SRémi Lacroix ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr); 2357a0a83eb5SRémi Lacroix /* clean up */ 2358a0a83eb5SRémi Lacroix if (pcomm!=comm) { 2359a0a83eb5SRémi Lacroix ierr = ISDestroy(&crowp);CHKERRQ(ierr); 2360a0a83eb5SRémi Lacroix } 2361dbf0e21dSBarry Smith if (size>1) { 23626bf464f9SBarry Smith ierr = ISDestroy(&lcolp);CHKERRQ(ierr); 236382094794SBarry Smith } 236482094794SBarry Smith PetscFunctionReturn(0); 236582094794SBarry Smith } 236682094794SBarry Smith 23678c7482ecSBarry Smith #undef __FUNCT__ 23688c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ" 23697087cfbeSBarry Smith PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[]) 23708c7482ecSBarry Smith { 23718c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data; 23728c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)baij->B->data; 23738c7482ecSBarry Smith 23748c7482ecSBarry Smith PetscFunctionBegin; 237526fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 237626fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 23778c7482ecSBarry Smith PetscFunctionReturn(0); 23788c7482ecSBarry Smith } 23798c7482ecSBarry Smith 2380f6d58c54SBarry Smith #undef __FUNCT__ 2381d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ" 2382d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat) 2383f6d58c54SBarry Smith { 2384f6d58c54SBarry Smith Mat B; 2385f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 2386f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data; 2387f6d58c54SBarry Smith Mat_SeqAIJ *b; 2388f6d58c54SBarry Smith PetscErrorCode ierr; 2389f6d58c54SBarry Smith PetscMPIInt size,rank,*recvcounts = 0,*displs = 0; 2390f6d58c54SBarry Smith PetscInt sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs; 2391f6d58c54SBarry Smith PetscInt m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf; 2392f6d58c54SBarry Smith 2393f6d58c54SBarry Smith PetscFunctionBegin; 2394ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr); 2395ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr); 2396f6d58c54SBarry Smith 2397f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2398f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2399f6d58c54SBarry Smith */ 2400854ce69bSBarry Smith ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr); 2401f6d58c54SBarry Smith for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) { 2402f6d58c54SBarry Smith lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs]; 2403f6d58c54SBarry Smith } 2404f6d58c54SBarry Smith sendcount = A->rmap->rend/bs - A->rmap->rstart/bs; 2405785e854fSJed Brown ierr = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr); 2406f6d58c54SBarry Smith displs = recvcounts + size; 2407f6d58c54SBarry Smith for (i=0; i<size; i++) { 2408f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs; 2409f6d58c54SBarry Smith displs[i] = A->rmap->range[i]/bs; 2410f6d58c54SBarry Smith } 2411f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2412ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2413f6d58c54SBarry Smith #else 2414ce94432eSBarry Smith ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2415f6d58c54SBarry Smith #endif 2416f6d58c54SBarry Smith /* --------------------------------------------------------------- 2417f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2418f6d58c54SBarry Smith */ 2419f6d58c54SBarry Smith ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr); 2420f6d58c54SBarry Smith ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 2421f6d58c54SBarry Smith ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr); 2422f6d58c54SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr); 2423f6d58c54SBarry Smith b = (Mat_SeqAIJ*)B->data; 2424f6d58c54SBarry Smith 2425f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2426f6d58c54SBarry Smith Copy my part of matrix column indices over 2427f6d58c54SBarry Smith */ 2428f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2429f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank]/bs]; 2430f6d58c54SBarry Smith a_jsendbuf = ad->j; 2431f6d58c54SBarry Smith b_jsendbuf = bd->j; 2432f6d58c54SBarry Smith n = A->rmap->rend/bs - A->rmap->rstart/bs; 2433f6d58c54SBarry Smith cnt = 0; 2434f6d58c54SBarry Smith for (i=0; i<n; i++) { 2435f6d58c54SBarry Smith 2436f6d58c54SBarry Smith /* put in lower diagonal portion */ 2437f6d58c54SBarry Smith m = bd->i[i+1] - bd->i[i]; 2438f6d58c54SBarry Smith while (m > 0) { 2439f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2440f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break; 2441f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2442f6d58c54SBarry Smith m--; 2443f6d58c54SBarry Smith } 2444f6d58c54SBarry Smith 2445f6d58c54SBarry Smith /* put in diagonal portion */ 2446f6d58c54SBarry Smith for (j=ad->i[i]; j<ad->i[i+1]; j++) { 2447f6d58c54SBarry Smith jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++; 2448f6d58c54SBarry Smith } 2449f6d58c54SBarry Smith 2450f6d58c54SBarry Smith /* put in upper diagonal portion */ 2451f6d58c54SBarry Smith while (m-- > 0) { 2452f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2453f6d58c54SBarry Smith } 2454f6d58c54SBarry Smith } 2455e32f2f54SBarry Smith if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt); 2456f6d58c54SBarry Smith 2457f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2458f6d58c54SBarry Smith Gather all column indices to all processors 2459f6d58c54SBarry Smith */ 2460f6d58c54SBarry Smith for (i=0; i<size; i++) { 2461f6d58c54SBarry Smith recvcounts[i] = 0; 2462f6d58c54SBarry Smith for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) { 2463f6d58c54SBarry Smith recvcounts[i] += lens[j]; 2464f6d58c54SBarry Smith } 2465f6d58c54SBarry Smith } 2466f6d58c54SBarry Smith displs[0] = 0; 2467f6d58c54SBarry Smith for (i=1; i<size; i++) { 2468f6d58c54SBarry Smith displs[i] = displs[i-1] + recvcounts[i-1]; 2469f6d58c54SBarry Smith } 2470f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE) 2471ce94432eSBarry Smith ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2472f6d58c54SBarry Smith #else 2473ce94432eSBarry Smith ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 2474f6d58c54SBarry Smith #endif 2475f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2476f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2477f6d58c54SBarry Smith */ 2478f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 2479f6d58c54SBarry Smith ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr); 2480f6d58c54SBarry Smith /* set the b->i indices */ 2481f6d58c54SBarry Smith b->i[0] = 0; 2482f6d58c54SBarry Smith for (i=1; i<=A->rmap->N/bs; i++) { 2483f6d58c54SBarry Smith b->i[i] = b->i[i-1] + lens[i-1]; 2484f6d58c54SBarry Smith } 2485f6d58c54SBarry Smith ierr = PetscFree(lens);CHKERRQ(ierr); 2486f6d58c54SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2487f6d58c54SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2488f6d58c54SBarry Smith ierr = PetscFree(recvcounts);CHKERRQ(ierr); 2489f6d58c54SBarry Smith 2490f6d58c54SBarry Smith if (A->symmetric) { 2491f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2492f6d58c54SBarry Smith } else if (A->hermitian) { 2493f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr); 2494f6d58c54SBarry Smith } else if (A->structurally_symmetric) { 2495f6d58c54SBarry Smith ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr); 2496f6d58c54SBarry Smith } 2497f6d58c54SBarry Smith *newmat = B; 2498f6d58c54SBarry Smith PetscFunctionReturn(0); 2499f6d58c54SBarry Smith } 2500f6d58c54SBarry Smith 2501b1a666ecSBarry Smith #undef __FUNCT__ 2502b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ" 2503b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx) 2504b1a666ecSBarry Smith { 2505b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ*)matin->data; 2506b1a666ecSBarry Smith PetscErrorCode ierr; 2507b1a666ecSBarry Smith Vec bb1 = 0; 2508b1a666ecSBarry Smith 2509b1a666ecSBarry Smith PetscFunctionBegin; 2510b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 2511b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2512b1a666ecSBarry Smith PetscFunctionReturn(0); 2513b1a666ecSBarry Smith } 2514b1a666ecSBarry Smith 25154e980039SJed Brown if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) { 25164e980039SJed Brown ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr); 25174e980039SJed Brown } 25184e980039SJed Brown 2519b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2520b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2521b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2522b1a666ecSBarry Smith its--; 2523b1a666ecSBarry Smith } 2524b1a666ecSBarry Smith 2525b1a666ecSBarry Smith while (its--) { 2526b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2527b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2528b1a666ecSBarry Smith 2529b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2530b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2531b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2532b1a666ecSBarry Smith 2533b1a666ecSBarry Smith /* local sweep */ 2534b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2535b1a666ecSBarry Smith } 2536b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2537b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2538b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2539b1a666ecSBarry Smith its--; 2540b1a666ecSBarry Smith } 2541b1a666ecSBarry Smith while (its--) { 2542b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2543b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2544b1a666ecSBarry Smith 2545b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2546b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2547b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2548b1a666ecSBarry Smith 2549b1a666ecSBarry Smith /* local sweep */ 2550b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2551b1a666ecSBarry Smith } 2552b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2553b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 2554b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr); 2555b1a666ecSBarry Smith its--; 2556b1a666ecSBarry Smith } 2557b1a666ecSBarry Smith while (its--) { 2558b1a666ecSBarry Smith ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2559b1a666ecSBarry Smith ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr); 2560b1a666ecSBarry Smith 2561b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 2562b1a666ecSBarry Smith ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr); 2563b1a666ecSBarry Smith ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr); 2564b1a666ecSBarry Smith 2565b1a666ecSBarry Smith /* local sweep */ 2566b1a666ecSBarry Smith ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr); 2567b1a666ecSBarry Smith } 2568ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported"); 2569b1a666ecSBarry Smith 25706bf464f9SBarry Smith ierr = VecDestroy(&bb1);CHKERRQ(ierr); 2571b1a666ecSBarry Smith PetscFunctionReturn(0); 2572b1a666ecSBarry Smith } 2573b1a666ecSBarry Smith 2574bbead8a2SBarry Smith #undef __FUNCT__ 257547f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ" 257647f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms) 257747f7623dSRémi Lacroix { 257847f7623dSRémi Lacroix PetscErrorCode ierr; 257947f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ*)A->data; 258047f7623dSRémi Lacroix PetscInt N,i,*garray = aij->garray; 258147f7623dSRémi Lacroix PetscInt ib,jb,bs = A->rmap->bs; 258247f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ*) aij->A->data; 258347f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 258447f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ*) aij->B->data; 258547f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 258647f7623dSRémi Lacroix PetscReal *work; 258747f7623dSRémi Lacroix 258847f7623dSRémi Lacroix PetscFunctionBegin; 258947f7623dSRémi Lacroix ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr); 25901795a4d1SJed Brown ierr = PetscCalloc1(N,&work);CHKERRQ(ierr); 259147f7623dSRémi Lacroix if (type == NORM_2) { 259247f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 259347f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 259447f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 259547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 259647f7623dSRémi Lacroix a_val++; 259747f7623dSRémi Lacroix } 259847f7623dSRémi Lacroix } 259947f7623dSRémi Lacroix } 260047f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 260147f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 260247f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 260347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 260447f7623dSRémi Lacroix b_val++; 260547f7623dSRémi Lacroix } 260647f7623dSRémi Lacroix } 260747f7623dSRémi Lacroix } 260847f7623dSRémi Lacroix } else if (type == NORM_1) { 260947f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 261047f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 261147f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 261247f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 261347f7623dSRémi Lacroix a_val++; 261447f7623dSRémi Lacroix } 261547f7623dSRémi Lacroix } 261647f7623dSRémi Lacroix } 261747f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 261847f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 261947f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 262047f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 262147f7623dSRémi Lacroix b_val++; 262247f7623dSRémi Lacroix } 262347f7623dSRémi Lacroix } 262447f7623dSRémi Lacroix } 262547f7623dSRémi Lacroix } else if (type == NORM_INFINITY) { 262647f7623dSRémi Lacroix for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) { 262747f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 262847f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 262947f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 263047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 263147f7623dSRémi Lacroix a_val++; 263247f7623dSRémi Lacroix } 263347f7623dSRémi Lacroix } 263447f7623dSRémi Lacroix } 263547f7623dSRémi Lacroix for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) { 263647f7623dSRémi Lacroix for (jb=0; jb<bs; jb++) { 263747f7623dSRémi Lacroix for (ib=0; ib<bs; ib++) { 263847f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 263947f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 264047f7623dSRémi Lacroix b_val++; 264147f7623dSRémi Lacroix } 264247f7623dSRémi Lacroix } 264347f7623dSRémi Lacroix } 264447f7623dSRémi Lacroix } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType"); 264547f7623dSRémi Lacroix if (type == NORM_INFINITY) { 2646b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 264747f7623dSRémi Lacroix } else { 2648b2566f29SBarry Smith ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr); 264947f7623dSRémi Lacroix } 265047f7623dSRémi Lacroix ierr = PetscFree(work);CHKERRQ(ierr); 265147f7623dSRémi Lacroix if (type == NORM_2) { 265247f7623dSRémi Lacroix for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]); 265347f7623dSRémi Lacroix } 265447f7623dSRémi Lacroix PetscFunctionReturn(0); 265547f7623dSRémi Lacroix } 265647f7623dSRémi Lacroix 265747f7623dSRémi Lacroix #undef __FUNCT__ 2658bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ" 2659713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values) 2660bbead8a2SBarry Smith { 2661bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*) A->data; 2662bbead8a2SBarry Smith PetscErrorCode ierr; 2663bbead8a2SBarry Smith 2664bbead8a2SBarry Smith PetscFunctionBegin; 2665bbead8a2SBarry Smith ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr); 2666d7806518SHong Zhang A->errortype = a->A->errortype; 2667bbead8a2SBarry Smith PetscFunctionReturn(0); 2668bbead8a2SBarry Smith } 2669bbead8a2SBarry Smith 26707d68702bSBarry Smith #undef __FUNCT__ 26717d68702bSBarry Smith #define __FUNCT__ "MatShift_MPIBAIJ" 26727d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a) 26737d68702bSBarry Smith { 26747d68702bSBarry Smith PetscErrorCode ierr; 26757d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ*)Y->data; 26766f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ*)maij->A->data; 26777d68702bSBarry Smith 26787d68702bSBarry Smith PetscFunctionBegin; 26796f33a894SBarry Smith if (!Y->preallocated) { 26807d68702bSBarry Smith ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr); 26816f33a894SBarry Smith } else if (!aij->nz) { 2682b83222d8SBarry Smith PetscInt nonew = aij->nonew; 26836f33a894SBarry Smith ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr); 2684b83222d8SBarry Smith aij->nonew = nonew; 26857d68702bSBarry Smith } 26867d68702bSBarry Smith ierr = MatShift_Basic(Y,a);CHKERRQ(ierr); 26877d68702bSBarry Smith PetscFunctionReturn(0); 26887d68702bSBarry Smith } 26898c7482ecSBarry Smith 26903b49f96aSBarry Smith #undef __FUNCT__ 26913b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPIBAIJ" 26923b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool *missing,PetscInt *d) 26933b49f96aSBarry Smith { 26943b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 26953b49f96aSBarry Smith PetscErrorCode ierr; 26963b49f96aSBarry Smith 26973b49f96aSBarry Smith PetscFunctionBegin; 26983b49f96aSBarry Smith if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices"); 26993b49f96aSBarry Smith ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr); 27003b49f96aSBarry Smith if (d) { 27013b49f96aSBarry Smith PetscInt rstart; 27023b49f96aSBarry Smith ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr); 27033b49f96aSBarry Smith *d += rstart/A->rmap->bs; 27043b49f96aSBarry Smith 27053b49f96aSBarry Smith } 27063b49f96aSBarry Smith PetscFunctionReturn(0); 27073b49f96aSBarry Smith } 27083b49f96aSBarry Smith 270979bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 27103964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2711cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2712cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2713cc2dc46cSBarry Smith MatMult_MPIBAIJ, 271497304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 27157c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 27167c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2717cc2dc46cSBarry Smith 0, 2718cc2dc46cSBarry Smith 0, 2719cc2dc46cSBarry Smith 0, 272097304618SKris Buschelman /*10*/ 0, 2721cc2dc46cSBarry Smith 0, 2722cc2dc46cSBarry Smith 0, 2723b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2724cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 272597304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 27267fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2727cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2728cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2729cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 273097304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2731cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2732cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2733cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2734d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2735cc2dc46cSBarry Smith 0, 2736cc2dc46cSBarry Smith 0, 2737cc2dc46cSBarry Smith 0, 2738cc2dc46cSBarry Smith 0, 27394994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2740273d9f13SBarry Smith 0, 2741cc2dc46cSBarry Smith 0, 2742cc2dc46cSBarry Smith 0, 2743cc2dc46cSBarry Smith 0, 2744d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2745cc2dc46cSBarry Smith 0, 2746cc2dc46cSBarry Smith 0, 2747cc2dc46cSBarry Smith 0, 2748cc2dc46cSBarry Smith 0, 2749d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 2750cc2dc46cSBarry Smith MatGetSubMatrices_MPIBAIJ, 2751cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2752cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 27533c896bc6SHong Zhang MatCopy_MPIBAIJ, 2754d519adbfSMatthew Knepley /*44*/ 0, 2755cc2dc46cSBarry Smith MatScale_MPIBAIJ, 27567d68702bSBarry Smith MatShift_MPIBAIJ, 2757cc2dc46cSBarry Smith 0, 27586f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2759f73d5cc4SBarry Smith /*49*/ 0, 2760cc2dc46cSBarry Smith 0, 2761cc2dc46cSBarry Smith 0, 2762cc2dc46cSBarry Smith 0, 2763cc2dc46cSBarry Smith 0, 276493dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2765cc2dc46cSBarry Smith 0, 2766cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 276782094794SBarry Smith MatPermute_MPIBAIJ, 2768cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 2769d519adbfSMatthew Knepley /*59*/ MatGetSubMatrix_MPIBAIJ, 2770f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2771f14a1c24SBarry Smith MatView_MPIBAIJ, 2772357abbc8SBarry Smith 0, 27737843d17aSBarry Smith 0, 2774d519adbfSMatthew Knepley /*64*/ 0, 27757843d17aSBarry Smith 0, 27767843d17aSBarry Smith 0, 27777843d17aSBarry Smith 0, 27787843d17aSBarry Smith 0, 2779d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 27807843d17aSBarry Smith 0, 278197304618SKris Buschelman 0, 278297304618SKris Buschelman 0, 278397304618SKris Buschelman 0, 2784d519adbfSMatthew Knepley /*74*/ 0, 2785f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 278697304618SKris Buschelman 0, 278797304618SKris Buschelman 0, 278897304618SKris Buschelman 0, 2789d519adbfSMatthew Knepley /*79*/ 0, 279097304618SKris Buschelman 0, 279197304618SKris Buschelman 0, 279297304618SKris Buschelman 0, 27935bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2794d519adbfSMatthew Knepley /*84*/ 0, 2795865e5f61SKris Buschelman 0, 2796865e5f61SKris Buschelman 0, 2797865e5f61SKris Buschelman 0, 2798865e5f61SKris Buschelman 0, 2799d519adbfSMatthew Knepley /*89*/ 0, 2800865e5f61SKris Buschelman 0, 2801865e5f61SKris Buschelman 0, 2802865e5f61SKris Buschelman 0, 2803865e5f61SKris Buschelman 0, 2804d519adbfSMatthew Knepley /*94*/ 0, 2805865e5f61SKris Buschelman 0, 2806865e5f61SKris Buschelman 0, 280799cafbc1SBarry Smith 0, 280899cafbc1SBarry Smith 0, 2809d519adbfSMatthew Knepley /*99*/ 0, 281099cafbc1SBarry Smith 0, 281199cafbc1SBarry Smith 0, 281299cafbc1SBarry Smith 0, 281399cafbc1SBarry Smith 0, 2814d519adbfSMatthew Knepley /*104*/0, 281599cafbc1SBarry Smith MatRealPart_MPIBAIJ, 28168c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 28178c7482ecSBarry Smith 0, 28188c7482ecSBarry Smith 0, 2819d519adbfSMatthew Knepley /*109*/0, 28208c7482ecSBarry Smith 0, 28218c7482ecSBarry Smith 0, 28228c7482ecSBarry Smith 0, 28233b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2824d1adec66SJed Brown /*114*/MatGetSeqNonzeroStructure_MPIBAIJ, 28258c7482ecSBarry Smith 0, 28264683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 28274683f7a4SShri Abhyankar 0, 28284683f7a4SShri Abhyankar 0, 28294683f7a4SShri Abhyankar /*119*/0, 28304683f7a4SShri Abhyankar 0, 28314683f7a4SShri Abhyankar 0, 2832bbead8a2SBarry Smith 0, 2833e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2834bbead8a2SBarry Smith /*124*/0, 283547f7623dSRémi Lacroix MatGetColumnNorms_MPIBAIJ, 28363964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 28373964eb88SJed Brown 0, 28383964eb88SJed Brown 0, 28393964eb88SJed Brown /*129*/ 0, 28403964eb88SJed Brown 0, 28413964eb88SJed Brown 0, 28423964eb88SJed Brown 0, 28433964eb88SJed Brown 0, 28443964eb88SJed Brown /*134*/ 0, 28453964eb88SJed Brown 0, 28463964eb88SJed Brown 0, 28473964eb88SJed Brown 0, 28483964eb88SJed Brown 0, 28493964eb88SJed Brown /*139*/ 0, 2850f9426fe0SMark Adams 0, 28511919a2e2SJed Brown 0, 2852bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2853bdf6f3fcSHong Zhang 0, 2854bdf6f3fcSHong Zhang /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ 28558c7482ecSBarry Smith }; 285679bdfe76SSatish Balay 28574a2ae208SSatish Balay #undef __FUNCT__ 28584a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ" 285911bd1e4dSLisandro Dalcin PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a) 28605ef9f2a5SBarry Smith { 28615ef9f2a5SBarry Smith PetscFunctionBegin; 28625ef9f2a5SBarry Smith *a = ((Mat_MPIBAIJ*)A->data)->A; 28635ef9f2a5SBarry Smith PetscFunctionReturn(0); 28645ef9f2a5SBarry Smith } 286579bdfe76SSatish Balay 2866cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*); 2867d94109b8SHong Zhang 2868aac34f13SBarry Smith #undef __FUNCT__ 2869aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ" 2870cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[]) 2871aac34f13SBarry Smith { 2872b8d659d7SLisandro Dalcin PetscInt m,rstart,cstart,cend; 2873b8d659d7SLisandro Dalcin PetscInt i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0; 2874b8d659d7SLisandro Dalcin const PetscInt *JJ =0; 2875b8d659d7SLisandro Dalcin PetscScalar *values=0; 2876d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented; 2877aac34f13SBarry Smith PetscErrorCode ierr; 2878aac34f13SBarry Smith 2879aac34f13SBarry Smith PetscFunctionBegin; 288026283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr); 288126283091SBarry Smith ierr = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr); 288226283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 288326283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2884e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2885d0f46423SBarry Smith m = B->rmap->n/bs; 2886d0f46423SBarry Smith rstart = B->rmap->rstart/bs; 2887d0f46423SBarry Smith cstart = B->cmap->rstart/bs; 2888d0f46423SBarry Smith cend = B->cmap->rend/bs; 2889b8d659d7SLisandro Dalcin 2890e32f2f54SBarry Smith if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]); 2891dcca6d9dSJed Brown ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr); 2892aac34f13SBarry Smith for (i=0; i<m; i++) { 2893cf12db73SBarry Smith nz = ii[i+1] - ii[i]; 2894e32f2f54SBarry Smith if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz); 2895b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max,nz); 2896cf12db73SBarry Smith JJ = jj + ii[i]; 2897b8d659d7SLisandro Dalcin for (j=0; j<nz; j++) { 2898aac34f13SBarry Smith if (*JJ >= cstart) break; 2899aac34f13SBarry Smith JJ++; 2900aac34f13SBarry Smith } 2901aac34f13SBarry Smith d = 0; 2902b8d659d7SLisandro Dalcin for (; j<nz; j++) { 2903aac34f13SBarry Smith if (*JJ++ >= cend) break; 2904aac34f13SBarry Smith d++; 2905aac34f13SBarry Smith } 2906aac34f13SBarry Smith d_nnz[i] = d; 2907b8d659d7SLisandro Dalcin o_nnz[i] = nz - d; 2908aac34f13SBarry Smith } 2909aac34f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr); 2910fca92195SBarry Smith ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr); 2911aac34f13SBarry Smith 2912b8d659d7SLisandro Dalcin values = (PetscScalar*)V; 2913b8d659d7SLisandro Dalcin if (!values) { 2914785e854fSJed Brown ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr); 2915b8d659d7SLisandro Dalcin ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr); 2916b8d659d7SLisandro Dalcin } 2917b8d659d7SLisandro Dalcin for (i=0; i<m; i++) { 2918b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2919cf12db73SBarry Smith PetscInt ncols = ii[i+1] - ii[i]; 2920cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 29213adadaf3SJed Brown if (!roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2922cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0); 2923b8d659d7SLisandro Dalcin ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr); 29243adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 29253adadaf3SJed Brown PetscInt j; 29263adadaf3SJed Brown for (j=0; j<ncols; j++) { 29273adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0); 29283adadaf3SJed Brown ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr); 29293adadaf3SJed Brown } 29303adadaf3SJed Brown } 2931aac34f13SBarry Smith } 2932aac34f13SBarry Smith 2933b8d659d7SLisandro Dalcin if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); } 2934aac34f13SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 2935aac34f13SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 29367827cd58SJed Brown ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr); 2937aac34f13SBarry Smith PetscFunctionReturn(0); 2938aac34f13SBarry Smith } 2939aac34f13SBarry Smith 2940aac34f13SBarry Smith #undef __FUNCT__ 2941aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR" 2942aac34f13SBarry Smith /*@C 2943dfb205c3SBarry Smith MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format 2944aac34f13SBarry Smith (the default parallel PETSc format). 2945aac34f13SBarry Smith 2946aac34f13SBarry Smith Collective on MPI_Comm 2947aac34f13SBarry Smith 2948aac34f13SBarry Smith Input Parameters: 29491c4f3114SJed Brown + B - the matrix 2950dfb205c3SBarry Smith . bs - the block size 2951aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2952aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2953aac34f13SBarry Smith - v - optional values in the matrix 2954aac34f13SBarry Smith 2955aac34f13SBarry Smith Level: developer 2956aac34f13SBarry Smith 29573adadaf3SJed Brown Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 29583adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 29593adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 29603adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 29613adadaf3SJed Brown block column and the second index is over columns within a block. 29623adadaf3SJed Brown 2963aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 2964aac34f13SBarry Smith 29653adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ 2966aac34f13SBarry Smith @*/ 29677087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[]) 2968aac34f13SBarry Smith { 29694ac538c5SBarry Smith PetscErrorCode ierr; 2970aac34f13SBarry Smith 2971aac34f13SBarry Smith PetscFunctionBegin; 29726ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 29736ba663aaSJed Brown PetscValidType(B,1); 29746ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 29754ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr); 2976aac34f13SBarry Smith PetscFunctionReturn(0); 2977aac34f13SBarry Smith } 2978aac34f13SBarry Smith 29794a2ae208SSatish Balay #undef __FUNCT__ 2980a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ" 2981b2573a8aSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz) 2982a23d5eceSKris Buschelman { 2983a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2984dfbe8321SBarry Smith PetscErrorCode ierr; 2985535b19f3SBarry Smith PetscInt i; 2986a23d5eceSKris Buschelman 2987a23d5eceSKris Buschelman PetscFunctionBegin; 298833d57670SJed Brown ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr); 298926283091SBarry Smith ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr); 299026283091SBarry Smith ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr); 2991e02043d6SBarry Smith ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr); 2992899cda47SBarry Smith 2993a23d5eceSKris Buschelman if (d_nnz) { 2994d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 2995e32f2f54SBarry Smith if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]); 2996a23d5eceSKris Buschelman } 2997a23d5eceSKris Buschelman } 2998a23d5eceSKris Buschelman if (o_nnz) { 2999d0f46423SBarry Smith for (i=0; i<B->rmap->n/bs; i++) { 3000e32f2f54SBarry Smith if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]); 3001a23d5eceSKris Buschelman } 3002a23d5eceSKris Buschelman } 3003a23d5eceSKris Buschelman 3004a23d5eceSKris Buschelman b = (Mat_MPIBAIJ*)B->data; 3005a23d5eceSKris Buschelman b->bs2 = bs*bs; 3006d0f46423SBarry Smith b->mbs = B->rmap->n/bs; 3007d0f46423SBarry Smith b->nbs = B->cmap->n/bs; 3008d0f46423SBarry Smith b->Mbs = B->rmap->N/bs; 3009d0f46423SBarry Smith b->Nbs = B->cmap->N/bs; 3010a23d5eceSKris Buschelman 3011a23d5eceSKris Buschelman for (i=0; i<=b->size; i++) { 3012d0f46423SBarry Smith b->rangebs[i] = B->rmap->range[i]/bs; 3013a23d5eceSKris Buschelman } 3014d0f46423SBarry Smith b->rstartbs = B->rmap->rstart/bs; 3015d0f46423SBarry Smith b->rendbs = B->rmap->rend/bs; 3016d0f46423SBarry Smith b->cstartbs = B->cmap->rstart/bs; 3017d0f46423SBarry Smith b->cendbs = B->cmap->rend/bs; 3018a23d5eceSKris Buschelman 3019526dfc15SBarry Smith if (!B->preallocated) { 3020f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr); 3021d0f46423SBarry Smith ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr); 30229c097c71SKris Buschelman ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr); 30233bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr); 3024f69a0ea3SMatthew Knepley ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr); 3025d0f46423SBarry Smith ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr); 30269c097c71SKris Buschelman ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr); 30273bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr); 3028ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr); 3029526dfc15SBarry Smith } 3030a23d5eceSKris Buschelman 3031526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr); 3032526dfc15SBarry Smith ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr); 3033526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 3034a23d5eceSKris Buschelman PetscFunctionReturn(0); 3035a23d5eceSKris Buschelman } 3036a23d5eceSKris Buschelman 30377087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec); 30387087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal); 30395bf65638SKris Buschelman 304082094794SBarry Smith #undef __FUNCT__ 304182094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj" 3042cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj) 304382094794SBarry Smith { 304482094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ*)B->data; 304582094794SBarry Smith PetscErrorCode ierr; 304682094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data; 304782094794SBarry Smith PetscInt M = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs; 304882094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 304982094794SBarry Smith 305082094794SBarry Smith PetscFunctionBegin; 3051854ce69bSBarry Smith ierr = PetscMalloc1(M+1,&ii);CHKERRQ(ierr); 305282094794SBarry Smith ii[0] = 0; 305382094794SBarry Smith for (i=0; i<M; i++) { 3054e32f2f54SBarry Smith if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]); 3055e32f2f54SBarry Smith if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]); 305682094794SBarry Smith ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i]; 30575ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 30585ee9ba1cSJed Brown for (j=id[i]; j<id[i+1]; j++) { 30595ee9ba1cSJed Brown if (jd[j] == i) {ii[i+1]--;break;} 30605ee9ba1cSJed Brown } 306182094794SBarry Smith } 3062785e854fSJed Brown ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr); 306382094794SBarry Smith cnt = 0; 306482094794SBarry Smith for (i=0; i<M; i++) { 306582094794SBarry Smith for (j=io[i]; j<io[i+1]; j++) { 306682094794SBarry Smith if (garray[jo[j]] > rstart) break; 306782094794SBarry Smith jj[cnt++] = garray[jo[j]]; 306882094794SBarry Smith } 306982094794SBarry Smith for (k=id[i]; k<id[i+1]; k++) { 30705ee9ba1cSJed Brown if (jd[k] != i) { 307182094794SBarry Smith jj[cnt++] = rstart + jd[k]; 307282094794SBarry Smith } 30735ee9ba1cSJed Brown } 307482094794SBarry Smith for (; j<io[i+1]; j++) { 307582094794SBarry Smith jj[cnt++] = garray[jo[j]]; 307682094794SBarry Smith } 307782094794SBarry Smith } 3078ce94432eSBarry Smith ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr); 307982094794SBarry Smith PetscFunctionReturn(0); 308082094794SBarry Smith } 308182094794SBarry Smith 3082c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 308362471d69SBarry Smith 3084cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*); 3085b2573a8aSBarry Smith 308662471d69SBarry Smith #undef __FUNCT__ 308762471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ" 3088cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat) 308962471d69SBarry Smith { 309062471d69SBarry Smith PetscErrorCode ierr; 309162471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 309262471d69SBarry Smith Mat B; 309385a69837SSatish Balay Mat_MPIAIJ *b; 309462471d69SBarry Smith 309562471d69SBarry Smith PetscFunctionBegin; 3096ce94432eSBarry Smith if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled"); 309762471d69SBarry Smith 3098ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr); 30996d0a4a0eSHong Zhang ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr); 3100f090d951SRémi Lacroix ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr); 3101f090d951SRémi Lacroix ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr); 31020298fd71SBarry Smith ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr); 31030298fd71SBarry Smith ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr); 310462471d69SBarry Smith b = (Mat_MPIAIJ*) B->data; 310562471d69SBarry Smith 31066bf464f9SBarry Smith ierr = MatDestroy(&b->A);CHKERRQ(ierr); 31076bf464f9SBarry Smith ierr = MatDestroy(&b->B);CHKERRQ(ierr); 3108ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr); 310962471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr); 311062471d69SBarry Smith ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr); 311162471d69SBarry Smith ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 311262471d69SBarry Smith ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31136a719282SBarry Smith ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 31146a719282SBarry Smith ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 3115511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 311628be2f97SBarry Smith ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr); 311762471d69SBarry Smith } else { 311862471d69SBarry Smith *newmat = B; 311962471d69SBarry Smith } 312062471d69SBarry Smith PetscFunctionReturn(0); 312162471d69SBarry Smith } 312262471d69SBarry Smith 31230bad9183SKris Buschelman /*MC 3124fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 31250bad9183SKris Buschelman 31260bad9183SKris Buschelman Options Database Keys: 31278c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 31288c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 31298c07d4e3SBarry Smith - -mat_use_hash_table <fact> 31300bad9183SKris Buschelman 31310bad9183SKris Buschelman Level: beginner 31320bad9183SKris Buschelman 31330bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ 31340bad9183SKris Buschelman M*/ 31350bad9183SKris Buschelman 3136cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*); 3137c0cdd4a1SDahai Guo 3138a23d5eceSKris Buschelman #undef __FUNCT__ 31394a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ" 31408cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) 3141273d9f13SBarry Smith { 3142273d9f13SBarry Smith Mat_MPIBAIJ *b; 3143dfbe8321SBarry Smith PetscErrorCode ierr; 314494ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 3145273d9f13SBarry Smith 3146273d9f13SBarry Smith PetscFunctionBegin; 3147b00a9115SJed Brown ierr = PetscNewLog(B,&b);CHKERRQ(ierr); 314882502324SSatish Balay B->data = (void*)b; 314982502324SSatish Balay 3150273d9f13SBarry Smith ierr = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr); 3151273d9f13SBarry Smith B->assembled = PETSC_FALSE; 3152273d9f13SBarry Smith 3153273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 3154ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr); 3155ce94432eSBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr); 3156273d9f13SBarry Smith 3157273d9f13SBarry Smith /* build local table of row and column ownerships */ 3158854ce69bSBarry Smith ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr); 3159273d9f13SBarry Smith 3160273d9f13SBarry Smith /* build cache for off array entries formed */ 3161ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr); 316226fbe8dcSKarl Rupp 3163273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 31640298fd71SBarry Smith b->colmap = NULL; 31650298fd71SBarry Smith b->garray = NULL; 3166273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 3167273d9f13SBarry Smith 3168273d9f13SBarry Smith /* stuff used in block assembly */ 3169273d9f13SBarry Smith b->barray = 0; 3170273d9f13SBarry Smith 3171273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 3172273d9f13SBarry Smith b->lvec = 0; 3173273d9f13SBarry Smith b->Mvctx = 0; 3174273d9f13SBarry Smith 3175273d9f13SBarry Smith /* stuff for MatGetRow() */ 3176273d9f13SBarry Smith b->rowindices = 0; 3177273d9f13SBarry Smith b->rowvalues = 0; 3178273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 3179273d9f13SBarry Smith 3180273d9f13SBarry Smith /* hash table stuff */ 3181273d9f13SBarry Smith b->ht = 0; 3182273d9f13SBarry Smith b->hd = 0; 3183273d9f13SBarry Smith b->ht_size = 0; 3184273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 3185273d9f13SBarry Smith b->ht_fact = 0; 3186273d9f13SBarry Smith b->ht_total_ct = 0; 3187273d9f13SBarry Smith b->ht_insert_ct = 0; 3188273d9f13SBarry Smith 31897a868f3eSHong Zhang /* stuff for MatGetSubMatrices_MPIBAIJ_local() */ 31907a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 31917a868f3eSHong Zhang 31928c07d4e3SBarry Smith 3193bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr); 3194bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr); 3195bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr); 3196bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr); 3197bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr); 3198bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr); 3199bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr); 3200bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr); 3201bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr); 3202bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr); 3203bdf89e91SBarry Smith ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr); 320417667f90SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr); 320594ae4db5SBarry Smith 320694ae4db5SBarry Smith ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr); 320794ae4db5SBarry Smith ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr); 320894ae4db5SBarry Smith if (flg) { 320994ae4db5SBarry Smith PetscReal fact = 1.39; 321094ae4db5SBarry Smith ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr); 321194ae4db5SBarry Smith ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr); 321294ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 321394ae4db5SBarry Smith ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr); 321494ae4db5SBarry Smith ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr); 321594ae4db5SBarry Smith } 321694ae4db5SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 3217273d9f13SBarry Smith PetscFunctionReturn(0); 3218273d9f13SBarry Smith } 3219273d9f13SBarry Smith 3220209238afSKris Buschelman /*MC 3221002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 3222209238afSKris Buschelman 3223209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 3224209238afSKris Buschelman and MATMPIBAIJ otherwise. 3225209238afSKris Buschelman 3226209238afSKris Buschelman Options Database Keys: 3227209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 3228209238afSKris Buschelman 3229209238afSKris Buschelman Level: beginner 3230209238afSKris Buschelman 323169b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 3232209238afSKris Buschelman M*/ 3233209238afSKris Buschelman 32344a2ae208SSatish Balay #undef __FUNCT__ 32354a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation" 3236273d9f13SBarry Smith /*@C 3237aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 3238273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 3239273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 3240273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 3241273d9f13SBarry Smith performance can be increased by more than a factor of 50. 3242273d9f13SBarry Smith 3243273d9f13SBarry Smith Collective on Mat 3244273d9f13SBarry Smith 3245273d9f13SBarry Smith Input Parameters: 32461c4f3114SJed Brown + B - the matrix 3247bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3248bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 3249273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 3250273d9f13SBarry Smith submatrix (same for all local rows) 3251273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 3252273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 32530298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 325495742e49SBarry Smith set it even if it is zero. 3255273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 3256273d9f13SBarry Smith submatrix (same for all local rows). 3257273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 3258273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 32590298fd71SBarry Smith each block row) or NULL. 3260273d9f13SBarry Smith 326149a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 3262273d9f13SBarry Smith 3263273d9f13SBarry Smith Options Database Keys: 32648c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 32658c07d4e3SBarry Smith - -mat_use_hash_table <fact> 3266273d9f13SBarry Smith 3267273d9f13SBarry Smith Notes: 3268273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3269273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 3270273d9f13SBarry Smith 3271273d9f13SBarry Smith Storage Information: 3272273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 3273273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 3274273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 3275273d9f13SBarry Smith local matrix (a rectangular submatrix). 3276273d9f13SBarry Smith 3277273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 3278273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 32790298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 3280273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 3281273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 3282273d9f13SBarry Smith 3283273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 3284273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 3285273d9f13SBarry Smith 3286273d9f13SBarry Smith .vb 3287273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 3288a4b1a0f6SJed Brown -------------------------- 3289273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 3290273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 3291273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 3292a4b1a0f6SJed Brown -------------------------- 3293273d9f13SBarry Smith .ve 3294273d9f13SBarry Smith 3295273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 3296273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 3297273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 3298273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 3299273d9f13SBarry Smith 3300273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3301273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 3302273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 3303273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 3304273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 3305273d9f13SBarry Smith matrices. 3306273d9f13SBarry Smith 3307aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 3308aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 3309aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 3310aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 3311aa95bbe8SBarry Smith 3312273d9f13SBarry Smith Level: intermediate 3313273d9f13SBarry Smith 3314273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel 3315273d9f13SBarry Smith 3316ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership() 3317273d9f13SBarry Smith @*/ 33187087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[]) 3319273d9f13SBarry Smith { 33204ac538c5SBarry Smith PetscErrorCode ierr; 3321273d9f13SBarry Smith 3322273d9f13SBarry Smith PetscFunctionBegin; 33236ba663aaSJed Brown PetscValidHeaderSpecific(B,MAT_CLASSID,1); 33246ba663aaSJed Brown PetscValidType(B,1); 33256ba663aaSJed Brown PetscValidLogicalCollectiveInt(B,bs,2); 33264ac538c5SBarry Smith ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr); 3327273d9f13SBarry Smith PetscFunctionReturn(0); 3328273d9f13SBarry Smith } 3329273d9f13SBarry Smith 33304a2ae208SSatish Balay #undef __FUNCT__ 333169b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ" 333279bdfe76SSatish Balay /*@C 333369b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 333479bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 333579bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 333679bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 333779bdfe76SSatish Balay performance can be increased by more than a factor of 50. 333879bdfe76SSatish Balay 3339db81eaa0SLois Curfman McInnes Collective on MPI_Comm 3340db81eaa0SLois Curfman McInnes 334179bdfe76SSatish Balay Input Parameters: 3342db81eaa0SLois Curfman McInnes + comm - MPI communicator 3343bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 3344bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 334579bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 334692e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 334792e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 334892e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 334992e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 335092e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3351be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3352be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 335347a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 335479bdfe76SSatish Balay submatrix (same for all local rows) 335547a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 335692e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 33570298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 335895742e49SBarry Smith and set it even if it is zero. 335947a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 336079bdfe76SSatish Balay submatrix (same for all local rows). 336147a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 336292e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 33630298fd71SBarry Smith each block row) or NULL. 336479bdfe76SSatish Balay 336579bdfe76SSatish Balay Output Parameter: 336679bdfe76SSatish Balay . A - the matrix 336779bdfe76SSatish Balay 3368db81eaa0SLois Curfman McInnes Options Database Keys: 33698c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 33708c07d4e3SBarry Smith - -mat_use_hash_table <fact> 33713ffaccefSLois Curfman McInnes 3372175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3373ae1d86c5SBarry Smith MatXXXXSetPreallocation() paradgm instead of this routine directly. 3374175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3375175b88e8SBarry Smith 3376b259b22eSLois Curfman McInnes Notes: 337749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 337849a6f317SBarry Smith 337947a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 338047a75d0bSBarry Smith 338179bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 338279bdfe76SSatish Balay (possibly both). 338379bdfe76SSatish Balay 3384be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3385be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3386be79a94dSBarry Smith 338779bdfe76SSatish Balay Storage Information: 338879bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 338979bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 339079bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 339179bdfe76SSatish Balay local matrix (a rectangular submatrix). 339279bdfe76SSatish Balay 339379bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 339479bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 33950298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 339679bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 339779bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 339879bdfe76SSatish Balay 339979bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 340079bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 340179bdfe76SSatish Balay 3402db81eaa0SLois Curfman McInnes .vb 3403db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3404a4b1a0f6SJed Brown -------------------------- 3405db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3406db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3407db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3408a4b1a0f6SJed Brown -------------------------- 3409db81eaa0SLois Curfman McInnes .ve 341079bdfe76SSatish Balay 341179bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 341279bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 341379bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 341457b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 341579bdfe76SSatish Balay 3416d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3417d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 341879bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 341992e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 342092e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 34216da5968aSLois Curfman McInnes matrices. 342279bdfe76SSatish Balay 3423027ccd11SLois Curfman McInnes Level: intermediate 3424027ccd11SLois Curfman McInnes 342592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel 342679bdfe76SSatish Balay 342769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR() 342879bdfe76SSatish Balay @*/ 342969b1f4b7SBarry Smith PetscErrorCode MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A) 343079bdfe76SSatish Balay { 34316849ba73SBarry Smith PetscErrorCode ierr; 3432b24ad042SBarry Smith PetscMPIInt size; 343379bdfe76SSatish Balay 3434d64ed03dSBarry Smith PetscFunctionBegin; 3435f69a0ea3SMatthew Knepley ierr = MatCreate(comm,A);CHKERRQ(ierr); 3436f69a0ea3SMatthew Knepley ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr); 3437d132466eSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 3438273d9f13SBarry Smith if (size > 1) { 3439273d9f13SBarry Smith ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr); 3440273d9f13SBarry Smith ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr); 3441273d9f13SBarry Smith } else { 3442273d9f13SBarry Smith ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr); 3443273d9f13SBarry Smith ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr); 34443914022bSBarry Smith } 34453a40ed3dSBarry Smith PetscFunctionReturn(0); 344679bdfe76SSatish Balay } 3447026e39d0SSatish Balay 34484a2ae208SSatish Balay #undef __FUNCT__ 34494a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ" 34506849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat) 34510ac07820SSatish Balay { 34520ac07820SSatish Balay Mat mat; 34530ac07820SSatish Balay Mat_MPIBAIJ *a,*oldmat = (Mat_MPIBAIJ*)matin->data; 3454dfbe8321SBarry Smith PetscErrorCode ierr; 3455b24ad042SBarry Smith PetscInt len=0; 34560ac07820SSatish Balay 3457d64ed03dSBarry Smith PetscFunctionBegin; 34580ac07820SSatish Balay *newmat = 0; 3459ce94432eSBarry Smith ierr = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr); 3460d0f46423SBarry Smith ierr = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr); 34617adad957SLisandro Dalcin ierr = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr); 34621d5dac46SHong Zhang ierr = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr); 34637fff6886SHong Zhang 3464d5f3da31SBarry Smith mat->factortype = matin->factortype; 3465273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 34660ac07820SSatish Balay mat->assembled = PETSC_TRUE; 34677fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 34687fff6886SHong Zhang 3469273d9f13SBarry Smith a = (Mat_MPIBAIJ*)mat->data; 3470d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 34710ac07820SSatish Balay a->bs2 = oldmat->bs2; 34720ac07820SSatish Balay a->mbs = oldmat->mbs; 34730ac07820SSatish Balay a->nbs = oldmat->nbs; 34740ac07820SSatish Balay a->Mbs = oldmat->Mbs; 34750ac07820SSatish Balay a->Nbs = oldmat->Nbs; 34760ac07820SSatish Balay 34771e1e43feSBarry Smith ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr); 34781e1e43feSBarry Smith ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr); 3479899cda47SBarry Smith 34800ac07820SSatish Balay a->size = oldmat->size; 34810ac07820SSatish Balay a->rank = oldmat->rank; 3482aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3483aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3484aef5e8e0SSatish Balay a->rowindices = 0; 34850ac07820SSatish Balay a->rowvalues = 0; 34860ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 348730793edcSSatish Balay a->barray = 0; 3488899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3489899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3490899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3491899cda47SBarry Smith a->cendbs = oldmat->cendbs; 34920ac07820SSatish Balay 3493133cdb44SSatish Balay /* hash table stuff */ 3494133cdb44SSatish Balay a->ht = 0; 3495133cdb44SSatish Balay a->hd = 0; 3496133cdb44SSatish Balay a->ht_size = 0; 3497133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 349825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3499133cdb44SSatish Balay a->ht_total_ct = 0; 3500133cdb44SSatish Balay a->ht_insert_ct = 0; 3501133cdb44SSatish Balay 3502899cda47SBarry Smith ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr); 35030ac07820SSatish Balay if (oldmat->colmap) { 3504aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 35050f5bd95cSBarry Smith ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr); 350648e59246SSatish Balay #else 3507854ce69bSBarry Smith ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr); 35083bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 3509b24ad042SBarry Smith ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr); 351048e59246SSatish Balay #endif 35110ac07820SSatish Balay } else a->colmap = 0; 35124beb1cfeSHong Zhang 35130ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) { 3514785e854fSJed Brown ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr); 35153bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr); 3516b24ad042SBarry Smith ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr); 35170ac07820SSatish Balay } else a->garray = 0; 35180ac07820SSatish Balay 3519ce94432eSBarry Smith ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr); 35200ac07820SSatish Balay ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr); 35213bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr); 35220ac07820SSatish Balay ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr); 35233bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr); 35247fff6886SHong Zhang 35252e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr); 35263bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr); 35272e8a6d31SBarry Smith ierr = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr); 35283bb1ff40SBarry Smith ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr); 3529140e18c1SBarry Smith ierr = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr); 35300ac07820SSatish Balay *newmat = mat; 35313a40ed3dSBarry Smith PetscFunctionReturn(0); 35320ac07820SSatish Balay } 353357b952d6SSatish Balay 35344a2ae208SSatish Balay #undef __FUNCT__ 35355bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ" 3536112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer) 35374683f7a4SShri Abhyankar { 35384683f7a4SShri Abhyankar PetscErrorCode ierr; 35394683f7a4SShri Abhyankar int fd; 35404683f7a4SShri Abhyankar PetscInt i,nz,j,rstart,rend; 35414683f7a4SShri Abhyankar PetscScalar *vals,*buf; 3542ce94432eSBarry Smith MPI_Comm comm; 35434683f7a4SShri Abhyankar MPI_Status status; 35444683f7a4SShri Abhyankar PetscMPIInt rank,size,maxnz; 35454683f7a4SShri Abhyankar PetscInt header[4],*rowlengths = 0,M,N,m,*rowners,*cols; 35460298fd71SBarry Smith PetscInt *locrowlens = NULL,*procsnz = NULL,*browners = NULL; 35473059b6faSBarry Smith PetscInt jj,*mycols,*ibuf,bs = newmat->rmap->bs,Mbs,mbs,extra_rows,mmax; 35484683f7a4SShri Abhyankar PetscMPIInt tag = ((PetscObject)viewer)->tag; 35490298fd71SBarry Smith PetscInt *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount; 3550461878b2SBarry Smith PetscInt dcount,kmax,k,nzcount,tmp,mend; 35514683f7a4SShri Abhyankar 35524683f7a4SShri Abhyankar PetscFunctionBegin; 3553c98fd787SBarry Smith /* force binary viewer to load .info file if it has not yet done so */ 3554c98fd787SBarry Smith ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr); 3555ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr); 35560298fd71SBarry Smith ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr); 35570298fd71SBarry Smith ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr); 35584683f7a4SShri Abhyankar ierr = PetscOptionsEnd();CHKERRQ(ierr); 35593059b6faSBarry Smith if (bs < 0) bs = 1; 35604683f7a4SShri Abhyankar 35614683f7a4SShri Abhyankar ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 35624683f7a4SShri Abhyankar ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 35634683f7a4SShri Abhyankar ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr); 35645872f025SBarry Smith if (!rank) { 35654683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr); 35664683f7a4SShri Abhyankar if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object"); 35674683f7a4SShri Abhyankar } 35684683f7a4SShri Abhyankar ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr); 35694683f7a4SShri Abhyankar M = header[1]; N = header[2]; 35704683f7a4SShri Abhyankar 35714683f7a4SShri Abhyankar /* If global sizes are set, check if they are consistent with that given in the file */ 3572461878b2SBarry Smith if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M); 3573461878b2SBarry Smith if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N); 35744683f7a4SShri Abhyankar 3575ce94432eSBarry Smith if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices"); 35764683f7a4SShri Abhyankar 35774683f7a4SShri Abhyankar /* 35784683f7a4SShri Abhyankar This code adds extra rows to make sure the number of rows is 35794683f7a4SShri Abhyankar divisible by the blocksize 35804683f7a4SShri Abhyankar */ 35814683f7a4SShri Abhyankar Mbs = M/bs; 35824683f7a4SShri Abhyankar extra_rows = bs - M + bs*Mbs; 35834683f7a4SShri Abhyankar if (extra_rows == bs) extra_rows = 0; 35844683f7a4SShri Abhyankar else Mbs++; 35854683f7a4SShri Abhyankar if (extra_rows && !rank) { 35864683f7a4SShri Abhyankar ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr); 35874683f7a4SShri Abhyankar } 35884683f7a4SShri Abhyankar 35894683f7a4SShri Abhyankar /* determine ownership of all rows */ 35904683f7a4SShri Abhyankar if (newmat->rmap->n < 0) { /* PETSC_DECIDE */ 35914683f7a4SShri Abhyankar mbs = Mbs/size + ((Mbs % size) > rank); 35924683f7a4SShri Abhyankar m = mbs*bs; 35934683f7a4SShri Abhyankar } else { /* User set */ 35944683f7a4SShri Abhyankar m = newmat->rmap->n; 35954683f7a4SShri Abhyankar mbs = m/bs; 35964683f7a4SShri Abhyankar } 3597dcca6d9dSJed Brown ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr); 35984683f7a4SShri Abhyankar ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr); 35994683f7a4SShri Abhyankar 36004683f7a4SShri Abhyankar /* process 0 needs enough room for process with most rows */ 36014683f7a4SShri Abhyankar if (!rank) { 36024683f7a4SShri Abhyankar mmax = rowners[1]; 36031251c579SMatthew G Knepley for (i=2; i<=size; i++) { 36044683f7a4SShri Abhyankar mmax = PetscMax(mmax,rowners[i]); 36054683f7a4SShri Abhyankar } 36064683f7a4SShri Abhyankar mmax*=bs; 36073964eb88SJed Brown } else mmax = -1; /* unused, but compiler warns anyway */ 36084683f7a4SShri Abhyankar 36094683f7a4SShri Abhyankar rowners[0] = 0; 36104683f7a4SShri Abhyankar for (i=2; i<=size; i++) rowners[i] += rowners[i-1]; 36114683f7a4SShri Abhyankar for (i=0; i<=size; i++) browners[i] = rowners[i]*bs; 36124683f7a4SShri Abhyankar rstart = rowners[rank]; 36134683f7a4SShri Abhyankar rend = rowners[rank+1]; 36144683f7a4SShri Abhyankar 36154683f7a4SShri Abhyankar /* distribute row lengths to all processors */ 3616785e854fSJed Brown ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr); 36174683f7a4SShri Abhyankar if (!rank) { 36184683f7a4SShri Abhyankar mend = m; 36194683f7a4SShri Abhyankar if (size == 1) mend = mend - extra_rows; 36204683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr); 36214683f7a4SShri Abhyankar for (j=mend; j<m; j++) locrowlens[j] = 1; 3622785e854fSJed Brown ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr); 36231795a4d1SJed Brown ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr); 36244683f7a4SShri Abhyankar for (j=0; j<m; j++) { 36254683f7a4SShri Abhyankar procsnz[0] += locrowlens[j]; 36264683f7a4SShri Abhyankar } 36274683f7a4SShri Abhyankar for (i=1; i<size; i++) { 36284683f7a4SShri Abhyankar mend = browners[i+1] - browners[i]; 36294683f7a4SShri Abhyankar if (i == size-1) mend = mend - extra_rows; 36304683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr); 36314683f7a4SShri Abhyankar for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1; 36324683f7a4SShri Abhyankar /* calculate the number of nonzeros on each processor */ 36334683f7a4SShri Abhyankar for (j=0; j<browners[i+1]-browners[i]; j++) { 36344683f7a4SShri Abhyankar procsnz[i] += rowlengths[j]; 36354683f7a4SShri Abhyankar } 36364683f7a4SShri Abhyankar ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr); 36374683f7a4SShri Abhyankar } 36384683f7a4SShri Abhyankar ierr = PetscFree(rowlengths);CHKERRQ(ierr); 36394683f7a4SShri Abhyankar } else { 36404683f7a4SShri Abhyankar ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 36414683f7a4SShri Abhyankar } 36424683f7a4SShri Abhyankar 36434683f7a4SShri Abhyankar if (!rank) { 36444683f7a4SShri Abhyankar /* determine max buffer needed and allocate it */ 36454683f7a4SShri Abhyankar maxnz = procsnz[0]; 36464683f7a4SShri Abhyankar for (i=1; i<size; i++) { 36474683f7a4SShri Abhyankar maxnz = PetscMax(maxnz,procsnz[i]); 36484683f7a4SShri Abhyankar } 3649785e854fSJed Brown ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr); 36504683f7a4SShri Abhyankar 36514683f7a4SShri Abhyankar /* read in my part of the matrix column indices */ 36524683f7a4SShri Abhyankar nz = procsnz[0]; 3653854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr); 36544683f7a4SShri Abhyankar mycols = ibuf; 36554683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 36564683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr); 365726fbe8dcSKarl Rupp if (size == 1) { 365826fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i; 365926fbe8dcSKarl Rupp } 36604683f7a4SShri Abhyankar 36614683f7a4SShri Abhyankar /* read in every ones (except the last) and ship off */ 36624683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 36634683f7a4SShri Abhyankar nz = procsnz[i]; 36644683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 36654683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr); 36664683f7a4SShri Abhyankar } 36674683f7a4SShri Abhyankar /* read in the stuff for the last proc */ 36684683f7a4SShri Abhyankar if (size != 1) { 36694683f7a4SShri Abhyankar nz = procsnz[size-1] - extra_rows; /* the extra rows are not on the disk */ 36704683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr); 36714683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) cols[nz+i] = M+i; 36724683f7a4SShri Abhyankar ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr); 36734683f7a4SShri Abhyankar } 36744683f7a4SShri Abhyankar ierr = PetscFree(cols);CHKERRQ(ierr); 36754683f7a4SShri Abhyankar } else { 36764683f7a4SShri Abhyankar /* determine buffer space needed for message */ 36774683f7a4SShri Abhyankar nz = 0; 36784683f7a4SShri Abhyankar for (i=0; i<m; i++) { 36794683f7a4SShri Abhyankar nz += locrowlens[i]; 36804683f7a4SShri Abhyankar } 3681854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr); 36824683f7a4SShri Abhyankar mycols = ibuf; 36834683f7a4SShri Abhyankar /* receive message of column indices*/ 36844683f7a4SShri Abhyankar ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr); 36854683f7a4SShri Abhyankar ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr); 36864683f7a4SShri Abhyankar if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file"); 36874683f7a4SShri Abhyankar } 36884683f7a4SShri Abhyankar 36894683f7a4SShri Abhyankar /* loop over local rows, determining number of off diagonal entries */ 3690dcca6d9dSJed Brown ierr = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr); 36911795a4d1SJed Brown ierr = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr); 36924683f7a4SShri Abhyankar rowcount = 0; nzcount = 0; 36934683f7a4SShri Abhyankar for (i=0; i<mbs; i++) { 36944683f7a4SShri Abhyankar dcount = 0; 36954683f7a4SShri Abhyankar odcount = 0; 36964683f7a4SShri Abhyankar for (j=0; j<bs; j++) { 36974683f7a4SShri Abhyankar kmax = locrowlens[rowcount]; 36984683f7a4SShri Abhyankar for (k=0; k<kmax; k++) { 36994683f7a4SShri Abhyankar tmp = mycols[nzcount++]/bs; 37004683f7a4SShri Abhyankar if (!mask[tmp]) { 37014683f7a4SShri Abhyankar mask[tmp] = 1; 37024683f7a4SShri Abhyankar if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp; 37034683f7a4SShri Abhyankar else masked1[dcount++] = tmp; 37044683f7a4SShri Abhyankar } 37054683f7a4SShri Abhyankar } 37064683f7a4SShri Abhyankar rowcount++; 37074683f7a4SShri Abhyankar } 37084683f7a4SShri Abhyankar 37094683f7a4SShri Abhyankar dlens[i] = dcount; 37104683f7a4SShri Abhyankar odlens[i] = odcount; 37114683f7a4SShri Abhyankar 37124683f7a4SShri Abhyankar /* zero out the mask elements we set */ 37134683f7a4SShri Abhyankar for (j=0; j<dcount; j++) mask[masked1[j]] = 0; 37144683f7a4SShri Abhyankar for (j=0; j<odcount; j++) mask[masked2[j]] = 0; 37154683f7a4SShri Abhyankar } 37164683f7a4SShri Abhyankar 37174683f7a4SShri Abhyankar ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr); 37184683f7a4SShri Abhyankar ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr); 37194683f7a4SShri Abhyankar 37204683f7a4SShri Abhyankar if (!rank) { 3721854ce69bSBarry Smith ierr = PetscMalloc1(maxnz+1,&buf);CHKERRQ(ierr); 37224683f7a4SShri Abhyankar /* read in my part of the matrix numerical values */ 37234683f7a4SShri Abhyankar nz = procsnz[0]; 37244683f7a4SShri Abhyankar vals = buf; 37254683f7a4SShri Abhyankar mycols = ibuf; 37264683f7a4SShri Abhyankar if (size == 1) nz -= extra_rows; 37274683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 372826fbe8dcSKarl Rupp if (size == 1) { 372926fbe8dcSKarl Rupp for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0; 373026fbe8dcSKarl Rupp } 37314683f7a4SShri Abhyankar 37324683f7a4SShri Abhyankar /* insert into matrix */ 37334683f7a4SShri Abhyankar jj = rstart*bs; 37344683f7a4SShri Abhyankar for (i=0; i<m; i++) { 37354683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 37364683f7a4SShri Abhyankar mycols += locrowlens[i]; 37374683f7a4SShri Abhyankar vals += locrowlens[i]; 37384683f7a4SShri Abhyankar jj++; 37394683f7a4SShri Abhyankar } 37404683f7a4SShri Abhyankar /* read in other processors (except the last one) and ship out */ 37414683f7a4SShri Abhyankar for (i=1; i<size-1; i++) { 37424683f7a4SShri Abhyankar nz = procsnz[i]; 37434683f7a4SShri Abhyankar vals = buf; 37444683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 3745479e424cSMichael Lange ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 37464683f7a4SShri Abhyankar } 37474683f7a4SShri Abhyankar /* the last proc */ 37484683f7a4SShri Abhyankar if (size != 1) { 37494683f7a4SShri Abhyankar nz = procsnz[i] - extra_rows; 37504683f7a4SShri Abhyankar vals = buf; 37514683f7a4SShri Abhyankar ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr); 37524683f7a4SShri Abhyankar for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0; 3753479e424cSMichael Lange ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 37544683f7a4SShri Abhyankar } 37554683f7a4SShri Abhyankar ierr = PetscFree(procsnz);CHKERRQ(ierr); 37564683f7a4SShri Abhyankar } else { 37574683f7a4SShri Abhyankar /* receive numeric values */ 3758854ce69bSBarry Smith ierr = PetscMalloc1(nz+1,&buf);CHKERRQ(ierr); 37594683f7a4SShri Abhyankar 37604683f7a4SShri Abhyankar /* receive message of values*/ 37614683f7a4SShri Abhyankar vals = buf; 37624683f7a4SShri Abhyankar mycols = ibuf; 3763479e424cSMichael Lange ierr = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr); 37644683f7a4SShri Abhyankar 37654683f7a4SShri Abhyankar /* insert into matrix */ 37664683f7a4SShri Abhyankar jj = rstart*bs; 37674683f7a4SShri Abhyankar for (i=0; i<m; i++) { 37684683f7a4SShri Abhyankar ierr = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr); 37694683f7a4SShri Abhyankar mycols += locrowlens[i]; 37704683f7a4SShri Abhyankar vals += locrowlens[i]; 37714683f7a4SShri Abhyankar jj++; 37724683f7a4SShri Abhyankar } 37734683f7a4SShri Abhyankar } 37744683f7a4SShri Abhyankar ierr = PetscFree(locrowlens);CHKERRQ(ierr); 37754683f7a4SShri Abhyankar ierr = PetscFree(buf);CHKERRQ(ierr); 37764683f7a4SShri Abhyankar ierr = PetscFree(ibuf);CHKERRQ(ierr); 37774683f7a4SShri Abhyankar ierr = PetscFree2(rowners,browners);CHKERRQ(ierr); 37784683f7a4SShri Abhyankar ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr); 37794683f7a4SShri Abhyankar ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr); 37804683f7a4SShri Abhyankar ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 37814683f7a4SShri Abhyankar ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 37824683f7a4SShri Abhyankar PetscFunctionReturn(0); 37834683f7a4SShri Abhyankar } 37844683f7a4SShri Abhyankar 37854683f7a4SShri Abhyankar #undef __FUNCT__ 37864a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor" 3787133cdb44SSatish Balay /*@ 3788133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3789133cdb44SSatish Balay 3790133cdb44SSatish Balay Input Parameters: 3791133cdb44SSatish Balay . mat - the matrix 3792133cdb44SSatish Balay . fact - factor 3793133cdb44SSatish Balay 3794c5eb9154SBarry Smith Not Collective, each process can use a different factor 3795fee21e36SBarry Smith 37968c890885SBarry Smith Level: advanced 37978c890885SBarry Smith 3798133cdb44SSatish Balay Notes: 37998c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3800133cdb44SSatish Balay 3801133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT 3802133cdb44SSatish Balay 3803133cdb44SSatish Balay .seealso: MatSetOption() 3804133cdb44SSatish Balay @*/ 38057087cfbeSBarry Smith PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact) 3806133cdb44SSatish Balay { 38074ac538c5SBarry Smith PetscErrorCode ierr; 38085bf65638SKris Buschelman 38095bf65638SKris Buschelman PetscFunctionBegin; 38104ac538c5SBarry Smith ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr); 38115bf65638SKris Buschelman PetscFunctionReturn(0); 38125bf65638SKris Buschelman } 38135bf65638SKris Buschelman 38145bf65638SKris Buschelman #undef __FUNCT__ 38155bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ" 38167087cfbeSBarry Smith PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact) 38175bf65638SKris Buschelman { 381825fdafccSSatish Balay Mat_MPIBAIJ *baij; 3819133cdb44SSatish Balay 3820133cdb44SSatish Balay PetscFunctionBegin; 3821133cdb44SSatish Balay baij = (Mat_MPIBAIJ*)mat->data; 3822133cdb44SSatish Balay baij->ht_fact = fact; 3823133cdb44SSatish Balay PetscFunctionReturn(0); 3824133cdb44SSatish Balay } 3825f2a5309cSSatish Balay 38264a2ae208SSatish Balay #undef __FUNCT__ 38274a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ" 38289230625dSJed Brown PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[]) 3829f2a5309cSSatish Balay { 3830f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data; 38315fd66863SKarl Rupp 3832f2a5309cSSatish Balay PetscFunctionBegin; 383321e72a00SBarry Smith if (Ad) *Ad = a->A; 383421e72a00SBarry Smith if (Ao) *Ao = a->B; 383521e72a00SBarry Smith if (colmap) *colmap = a->garray; 3836f2a5309cSSatish Balay PetscFunctionReturn(0); 3837f2a5309cSSatish Balay } 383885535b8eSBarry Smith 383985535b8eSBarry Smith /* 384085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 384185535b8eSBarry Smith */ 384285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 384385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 384485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 384585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 384685535b8eSBarry Smith #endif 384785535b8eSBarry Smith 384885535b8eSBarry Smith #undef __FUNCT__ 384985535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked" 385085535b8eSBarry Smith /*@C 385185535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 385285535b8eSBarry Smith 385385535b8eSBarry Smith Collective on Mat 385485535b8eSBarry Smith 385585535b8eSBarry Smith Input Parameters: 385685535b8eSBarry Smith + mat - the matrix 385785535b8eSBarry Smith . min - number of input rows 385885535b8eSBarry Smith . im - input rows 385985535b8eSBarry Smith . nin - number of input columns 386085535b8eSBarry Smith . in - input columns 386185535b8eSBarry Smith . v - numerical values input 386285535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 386385535b8eSBarry Smith 386485535b8eSBarry Smith Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 386585535b8eSBarry Smith 386685535b8eSBarry Smith Level: advanced 386785535b8eSBarry Smith 386885535b8eSBarry Smith .seealso: MatSetValuesBlocked() 386985535b8eSBarry Smith @*/ 387085535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin) 387185535b8eSBarry Smith { 387285535b8eSBarry Smith /* convert input arguments to C version */ 387385535b8eSBarry Smith Mat mat = *matin; 387485535b8eSBarry Smith PetscInt m = *min, n = *nin; 387585535b8eSBarry Smith InsertMode addv = *addvin; 387685535b8eSBarry Smith 387785535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; 387885535b8eSBarry Smith const MatScalar *value; 387985535b8eSBarry Smith MatScalar *barray = baij->barray; 3880ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 388185535b8eSBarry Smith PetscErrorCode ierr; 388285535b8eSBarry Smith PetscInt i,j,ii,jj,row,col,rstart=baij->rstartbs; 388385535b8eSBarry Smith PetscInt rend=baij->rendbs,cstart=baij->cstartbs,stepval; 3884d0f46423SBarry Smith PetscInt cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2; 388585535b8eSBarry Smith 388685535b8eSBarry Smith PetscFunctionBegin; 388785535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 388826fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 388985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3890e7e72b3dSBarry Smith else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values"); 3891e32f2f54SBarry Smith if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix"); 389285535b8eSBarry Smith #endif 389385535b8eSBarry Smith if (mat->assembled) { 389485535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 389585535b8eSBarry Smith mat->assembled = PETSC_FALSE; 389685535b8eSBarry Smith } 389785535b8eSBarry Smith ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 389885535b8eSBarry Smith 389985535b8eSBarry Smith 390085535b8eSBarry Smith if (!barray) { 3901785e854fSJed Brown ierr = PetscMalloc1(bs2,&barray);CHKERRQ(ierr); 390285535b8eSBarry Smith baij->barray = barray; 390385535b8eSBarry Smith } 390485535b8eSBarry Smith 390526fbe8dcSKarl Rupp if (roworiented) stepval = (n-1)*bs; 390626fbe8dcSKarl Rupp else stepval = (m-1)*bs; 390726fbe8dcSKarl Rupp 390885535b8eSBarry Smith for (i=0; i<m; i++) { 390985535b8eSBarry Smith if (im[i] < 0) continue; 391085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3911e32f2f54SBarry Smith if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1); 391285535b8eSBarry Smith #endif 391385535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 391485535b8eSBarry Smith row = im[i] - rstart; 391585535b8eSBarry Smith for (j=0; j<n; j++) { 391685535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 391785535b8eSBarry Smith if ((roworiented) && (n == 1)) { 391885535b8eSBarry Smith barray = (MatScalar*)v + i*bs2; 391985535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 392085535b8eSBarry Smith barray = (MatScalar*)v + j*bs2; 392185535b8eSBarry Smith } else { /* Here a copy is required */ 392285535b8eSBarry Smith if (roworiented) { 392385535b8eSBarry Smith value = v + i*(stepval+bs)*bs + j*bs; 392485535b8eSBarry Smith } else { 392585535b8eSBarry Smith value = v + j*(stepval+bs)*bs + i*bs; 392685535b8eSBarry Smith } 392785535b8eSBarry Smith for (ii=0; ii<bs; ii++,value+=stepval) { 392885535b8eSBarry Smith for (jj=0; jj<bs; jj++) { 392985535b8eSBarry Smith *barray++ = *value++; 393085535b8eSBarry Smith } 393185535b8eSBarry Smith } 393285535b8eSBarry Smith barray -=bs2; 393385535b8eSBarry Smith } 393485535b8eSBarry Smith 393585535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 393685535b8eSBarry Smith col = in[j] - cstart; 39378ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 393826fbe8dcSKarl Rupp } else if (in[j] < 0) continue; 393985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 3940cb9801acSJed Brown else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1); 394185535b8eSBarry Smith #endif 394285535b8eSBarry Smith else { 394385535b8eSBarry Smith if (mat->was_assembled) { 394485535b8eSBarry Smith if (!baij->colmap) { 3945ab9863d7SBarry Smith ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr); 394685535b8eSBarry Smith } 394785535b8eSBarry Smith 394885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 394985535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 395085535b8eSBarry Smith { PetscInt data; 395185535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr); 3952e32f2f54SBarry Smith if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 395385535b8eSBarry Smith } 395485535b8eSBarry Smith #else 3955e32f2f54SBarry Smith if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap"); 395685535b8eSBarry Smith #endif 395785535b8eSBarry Smith #endif 395885535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 395985535b8eSBarry Smith ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr); 396085535b8eSBarry Smith col = (col - 1)/bs; 396185535b8eSBarry Smith #else 396285535b8eSBarry Smith col = (baij->colmap[in[j]] - 1)/bs; 396385535b8eSBarry Smith #endif 396485535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) { 3965ab9863d7SBarry Smith ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr); 396685535b8eSBarry Smith col = in[j]; 396785535b8eSBarry Smith } 396826fbe8dcSKarl Rupp } else col = in[j]; 39698ab52850SBarry Smith ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr); 397085535b8eSBarry Smith } 397185535b8eSBarry Smith } 397285535b8eSBarry Smith } else { 397385535b8eSBarry Smith if (!baij->donotstash) { 397485535b8eSBarry Smith if (roworiented) { 397585535b8eSBarry Smith ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 397685535b8eSBarry Smith } else { 397785535b8eSBarry Smith ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr); 397885535b8eSBarry Smith } 397985535b8eSBarry Smith } 398085535b8eSBarry Smith } 398185535b8eSBarry Smith } 398285535b8eSBarry Smith 398385535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 398485535b8eSBarry Smith ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr); 398585535b8eSBarry Smith PetscFunctionReturn(0); 398685535b8eSBarry Smith } 3987dfb205c3SBarry Smith 3988dfb205c3SBarry Smith #undef __FUNCT__ 3989dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays" 3990dfb205c3SBarry Smith /*@ 3991dfb205c3SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard 3992dfb205c3SBarry Smith CSR format the local rows. 3993dfb205c3SBarry Smith 3994dfb205c3SBarry Smith Collective on MPI_Comm 3995dfb205c3SBarry Smith 3996dfb205c3SBarry Smith Input Parameters: 3997dfb205c3SBarry Smith + comm - MPI communicator 3998dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3999dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 4000dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 4001dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 4002dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 4003dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 4004dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 4005dfb205c3SBarry Smith . i - row indices 4006dfb205c3SBarry Smith . j - column indices 4007dfb205c3SBarry Smith - a - matrix values 4008dfb205c3SBarry Smith 4009dfb205c3SBarry Smith Output Parameter: 4010dfb205c3SBarry Smith . mat - the matrix 4011dfb205c3SBarry Smith 4012dfb205c3SBarry Smith Level: intermediate 4013dfb205c3SBarry Smith 4014dfb205c3SBarry Smith Notes: 4015dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 4016dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 4017dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 4018dfb205c3SBarry Smith 40193adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 40203adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 40213adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 40223adadaf3SJed Brown with column-major ordering within blocks. 40233adadaf3SJed Brown 4024dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 4025dfb205c3SBarry Smith 4026dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel 4027dfb205c3SBarry Smith 4028dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(), 402969b1f4b7SBarry Smith MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays() 4030dfb205c3SBarry Smith @*/ 40317087cfbeSBarry Smith PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat) 4032dfb205c3SBarry Smith { 4033dfb205c3SBarry Smith PetscErrorCode ierr; 4034dfb205c3SBarry Smith 4035dfb205c3SBarry Smith PetscFunctionBegin; 4036f23aa3ddSBarry Smith if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0"); 4037dfb205c3SBarry Smith if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative"); 4038dfb205c3SBarry Smith ierr = MatCreate(comm,mat);CHKERRQ(ierr); 4039dfb205c3SBarry Smith ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr); 4040dfb205c3SBarry Smith ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr); 4041d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr); 4042dfb205c3SBarry Smith ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr); 4043d47bf9aaSJed Brown ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr); 4044dfb205c3SBarry Smith PetscFunctionReturn(0); 4045dfb205c3SBarry Smith } 4046e561ad89SHong Zhang 4047e561ad89SHong Zhang #undef __FUNCT__ 4048bd153df0SHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPIBAIJ" 4049bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat) 4050e561ad89SHong Zhang { 4051e561ad89SHong Zhang PetscErrorCode ierr; 4052bd153df0SHong Zhang PetscInt m,N,i,rstart,nnz,Ii,bs,cbs; 4053bd153df0SHong Zhang PetscInt *indx; 4054bd153df0SHong Zhang PetscScalar *values; 4055e561ad89SHong Zhang 4056e561ad89SHong Zhang PetscFunctionBegin; 4057e561ad89SHong Zhang ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr); 4058bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 4059bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ*)inmat->data; 4060bd153df0SHong Zhang PetscInt *dnz,*onz,sum,mbs,Nbs; 4061bd153df0SHong Zhang PetscInt *bindx,rmax=a->rmax,j; 4062e561ad89SHong Zhang 4063bd153df0SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 4064bd153df0SHong Zhang mbs = m/bs; Nbs = N/cbs; 4065bd153df0SHong Zhang if (n == PETSC_DECIDE) { 4066bd153df0SHong Zhang ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr); 4067bd153df0SHong Zhang } 4068bd153df0SHong Zhang /* Check sum(n) = Nbs */ 4069b2566f29SBarry Smith ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 4070bd153df0SHong Zhang if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs); 4071bd153df0SHong Zhang 4072bd153df0SHong Zhang ierr = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr); 4073bd153df0SHong Zhang rstart -= mbs; 4074e561ad89SHong Zhang 4075647a6520SHong Zhang ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr); 4076bd153df0SHong Zhang ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr); 4077bd153df0SHong Zhang for (i=0; i<mbs; i++) { 4078647a6520SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */ 4079647a6520SHong Zhang nnz = nnz/bs; 4080647a6520SHong Zhang for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs; 4081647a6520SHong Zhang ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr); 4082647a6520SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); 4083e561ad89SHong Zhang } 4084647a6520SHong Zhang ierr = PetscFree(bindx);CHKERRQ(ierr); 4085e561ad89SHong Zhang 4086e561ad89SHong Zhang ierr = MatCreate(comm,outmat);CHKERRQ(ierr); 4087bd153df0SHong Zhang ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr); 4088e561ad89SHong Zhang ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr); 4089e561ad89SHong Zhang ierr = MatSetType(*outmat,MATMPIBAIJ);CHKERRQ(ierr); 4090e561ad89SHong Zhang ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr); 4091e561ad89SHong Zhang ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr); 4092e561ad89SHong Zhang } 4093e561ad89SHong Zhang 4094bd153df0SHong Zhang /* numeric phase */ 4095647a6520SHong Zhang ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr); 4096bd153df0SHong Zhang ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr); 4097e561ad89SHong Zhang 4098e561ad89SHong Zhang for (i=0; i<m; i++) { 4099e561ad89SHong Zhang ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 4100e561ad89SHong Zhang Ii = i + rstart; 4101bd153df0SHong Zhang ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr); 4102e561ad89SHong Zhang ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr); 4103e561ad89SHong Zhang } 4104bd153df0SHong Zhang ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 4105bd153df0SHong Zhang ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 4106e561ad89SHong Zhang PetscFunctionReturn(0); 4107e561ad89SHong Zhang } 4108