xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 45f3bb6e2ab689450ec389543af70463a1ef8274)
179bdfe76SSatish Balay 
2c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h>   /*I  "petscmat.h"  I*/
3c5d9258eSSatish Balay 
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
74a2ae208SSatish Balay #undef __FUNCT__
8985db425SBarry Smith #define __FUNCT__ "MatGetRowMaxAbs_MPIBAIJ"
9985db425SBarry Smith PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A,Vec v,PetscInt idx[])
107843d17aSBarry Smith {
117843d17aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
12dfbe8321SBarry Smith   PetscErrorCode ierr;
13985db425SBarry Smith   PetscInt       i,*idxb = 0;
1487828ca2SBarry Smith   PetscScalar    *va,*vb;
157843d17aSBarry Smith   Vec            vtmp;
167843d17aSBarry Smith 
177843d17aSBarry Smith   PetscFunctionBegin;
18985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->A,v,idx);CHKERRQ(ierr);
191ebc52fbSHong Zhang   ierr = VecGetArray(v,&va);CHKERRQ(ierr);
20985db425SBarry Smith   if (idx) {
2126fbe8dcSKarl Rupp     for (i=0; i<A->rmap->n; i++) {
2226fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2326fbe8dcSKarl Rupp     }
24985db425SBarry Smith   }
257843d17aSBarry Smith 
26d0f46423SBarry Smith   ierr = VecCreateSeq(PETSC_COMM_SELF,A->rmap->n,&vtmp);CHKERRQ(ierr);
27785e854fSJed Brown   if (idx) {ierr = PetscMalloc1(A->rmap->n,&idxb);CHKERRQ(ierr);}
28985db425SBarry Smith   ierr = MatGetRowMaxAbs(a->B,vtmp,idxb);CHKERRQ(ierr);
291ebc52fbSHong Zhang   ierr = VecGetArray(vtmp,&vb);CHKERRQ(ierr);
307843d17aSBarry Smith 
31d0f46423SBarry Smith   for (i=0; i<A->rmap->n; i++) {
3226fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
3326fbe8dcSKarl Rupp       va[i] = vb[i];
3426fbe8dcSKarl Rupp       if (idx) idx[i] = A->cmap->bs*a->garray[idxb[i]/A->cmap->bs] + (idxb[i] % A->cmap->bs);
3526fbe8dcSKarl Rupp     }
367843d17aSBarry Smith   }
377843d17aSBarry Smith 
381ebc52fbSHong Zhang   ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
391ebc52fbSHong Zhang   ierr = VecRestoreArray(vtmp,&vb);CHKERRQ(ierr);
40c31cb41cSBarry Smith   ierr = PetscFree(idxb);CHKERRQ(ierr);
416bf464f9SBarry Smith   ierr = VecDestroy(&vtmp);CHKERRQ(ierr);
427843d17aSBarry Smith   PetscFunctionReturn(0);
437843d17aSBarry Smith }
447843d17aSBarry Smith 
454a2ae208SSatish Balay #undef __FUNCT__
464a2ae208SSatish Balay #define __FUNCT__ "MatStoreValues_MPIBAIJ"
477087cfbeSBarry Smith PetscErrorCode  MatStoreValues_MPIBAIJ(Mat mat)
487fc3c18eSBarry Smith {
497fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
50dfbe8321SBarry Smith   PetscErrorCode ierr;
517fc3c18eSBarry Smith 
527fc3c18eSBarry Smith   PetscFunctionBegin;
537fc3c18eSBarry Smith   ierr = MatStoreValues(aij->A);CHKERRQ(ierr);
547fc3c18eSBarry Smith   ierr = MatStoreValues(aij->B);CHKERRQ(ierr);
557fc3c18eSBarry Smith   PetscFunctionReturn(0);
567fc3c18eSBarry Smith }
577fc3c18eSBarry Smith 
584a2ae208SSatish Balay #undef __FUNCT__
594a2ae208SSatish Balay #define __FUNCT__ "MatRetrieveValues_MPIBAIJ"
607087cfbeSBarry Smith PetscErrorCode  MatRetrieveValues_MPIBAIJ(Mat mat)
617fc3c18eSBarry Smith {
627fc3c18eSBarry Smith   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)mat->data;
63dfbe8321SBarry Smith   PetscErrorCode ierr;
647fc3c18eSBarry Smith 
657fc3c18eSBarry Smith   PetscFunctionBegin;
667fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->A);CHKERRQ(ierr);
677fc3c18eSBarry Smith   ierr = MatRetrieveValues(aij->B);CHKERRQ(ierr);
687fc3c18eSBarry Smith   PetscFunctionReturn(0);
697fc3c18eSBarry Smith }
707fc3c18eSBarry Smith 
71537820f0SBarry Smith /*
72537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7357b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
74e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7557b952d6SSatish Balay    length of colmap equals the global matrix length.
7657b952d6SSatish Balay */
774a2ae208SSatish Balay #undef __FUNCT__
78ab9863d7SBarry Smith #define __FUNCT__ "MatCreateColmap_MPIBAIJ_Private"
79ab9863d7SBarry Smith PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat)
8057b952d6SSatish Balay {
8157b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
8257b952d6SSatish Balay   Mat_SeqBAIJ    *B    = (Mat_SeqBAIJ*)baij->B->data;
836849ba73SBarry Smith   PetscErrorCode ierr;
84d0f46423SBarry Smith   PetscInt       nbs = B->nbs,i,bs=mat->rmap->bs;
8557b952d6SSatish Balay 
86d64ed03dSBarry Smith   PetscFunctionBegin;
87aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
88e23dfa41SBarry Smith   ierr = PetscTableCreate(baij->nbs,baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
8948e59246SSatish Balay   for (i=0; i<nbs; i++) {
903861aac3SJed Brown     ierr = PetscTableAdd(baij->colmap,baij->garray[i]+1,i*bs+1,INSERT_VALUES);CHKERRQ(ierr);
9148e59246SSatish Balay   }
9248e59246SSatish Balay #else
93854ce69bSBarry Smith   ierr = PetscMalloc1(baij->Nbs+1,&baij->colmap);CHKERRQ(ierr);
943bb1ff40SBarry Smith   ierr = PetscLogObjectMemory((PetscObject)mat,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
95b24ad042SBarry Smith   ierr = PetscMemzero(baij->colmap,baij->Nbs*sizeof(PetscInt));CHKERRQ(ierr);
96928fc39bSSatish Balay   for (i=0; i<nbs; i++) baij->colmap[baij->garray[i]] = i*bs+1;
9748e59246SSatish Balay #endif
983a40ed3dSBarry Smith   PetscFunctionReturn(0);
9957b952d6SSatish Balay }
10057b952d6SSatish Balay 
101d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,orow,ocol)       \
10280c1aa95SSatish Balay   { \
10380c1aa95SSatish Balay  \
10480c1aa95SSatish Balay     brow = row/bs;  \
10580c1aa95SSatish Balay     rp   = aj + ai[brow]; ap = aa + bs2*ai[brow]; \
106ac7a638eSSatish Balay     rmax = aimax[brow]; nrow = ailen[brow]; \
10780c1aa95SSatish Balay     bcol = col/bs; \
10880c1aa95SSatish Balay     ridx = row % bs; cidx = col % bs; \
109ab26458aSBarry Smith     low  = 0; high = nrow; \
110ab26458aSBarry Smith     while (high-low > 3) { \
111ab26458aSBarry Smith       t = (low+high)/2; \
112ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
113ab26458aSBarry Smith       else              low  = t; \
114ab26458aSBarry Smith     } \
115ab26458aSBarry Smith     for (_i=low; _i<high; _i++) { \
11680c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11780c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11880c1aa95SSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
119eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
120eada6651SSatish Balay         else                    *bap  = value;  \
121ac7a638eSSatish Balay         goto a_noinsert; \
12280c1aa95SSatish Balay       } \
12380c1aa95SSatish Balay     } \
12489280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
125d40312a9SBarry Smith     if (a->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column (%D, %D) into matrix", orow, ocol); \
126fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,brow,bcol,rmax,aa,ai,aj,rp,ap,aimax,a->nonew,MatScalar); \
12780c1aa95SSatish Balay     N = nrow++ - 1;  \
12880c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
12980c1aa95SSatish Balay     for (ii=N; ii>=_i; ii--) { \
13080c1aa95SSatish Balay       rp[ii+1] = rp[ii]; \
1313eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
13280c1aa95SSatish Balay     } \
1333eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr); }  \
13480c1aa95SSatish Balay     rp[_i]                      = bcol;  \
13580c1aa95SSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
136ac7a638eSSatish Balay a_noinsert:; \
13780c1aa95SSatish Balay     ailen[brow] = nrow; \
13880c1aa95SSatish Balay   }
13957b952d6SSatish Balay 
140d40312a9SBarry Smith #define  MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,orow,ocol)       \
141ac7a638eSSatish Balay   { \
142ac7a638eSSatish Balay     brow = row/bs;  \
143ac7a638eSSatish Balay     rp   = bj + bi[brow]; ap = ba + bs2*bi[brow]; \
144ac7a638eSSatish Balay     rmax = bimax[brow]; nrow = bilen[brow]; \
145ac7a638eSSatish Balay     bcol = col/bs; \
146ac7a638eSSatish Balay     ridx = row % bs; cidx = col % bs; \
147ac7a638eSSatish Balay     low  = 0; high = nrow; \
148ac7a638eSSatish Balay     while (high-low > 3) { \
149ac7a638eSSatish Balay       t = (low+high)/2; \
150ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
151ac7a638eSSatish Balay       else              low  = t; \
152ac7a638eSSatish Balay     } \
153ac7a638eSSatish Balay     for (_i=low; _i<high; _i++) { \
154ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
155ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
156ac7a638eSSatish Balay         bap = ap +  bs2*_i + bs*cidx + ridx; \
157ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value;  \
158ac7a638eSSatish Balay         else                    *bap  = value;  \
159ac7a638eSSatish Balay         goto b_noinsert; \
160ac7a638eSSatish Balay       } \
161ac7a638eSSatish Balay     } \
16289280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
163d40312a9SBarry Smith     if (b->nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero at global row/column  (%D, %D) into matrix", orow, ocol); \
164fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B,b->mbs,bs2,nrow,brow,bcol,rmax,ba,bi,bj,rp,ap,bimax,b->nonew,MatScalar); \
165ac7a638eSSatish Balay     N = nrow++ - 1;  \
166ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
167ac7a638eSSatish Balay     for (ii=N; ii>=_i; ii--) { \
168ac7a638eSSatish Balay       rp[ii+1] = rp[ii]; \
1693eda8832SBarry Smith       ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr); \
170ac7a638eSSatish Balay     } \
1713eda8832SBarry Smith     if (N>=_i) { ierr = PetscMemzero(ap+bs2*_i,bs2*sizeof(MatScalar));CHKERRQ(ierr);}  \
172ac7a638eSSatish Balay     rp[_i]                      = bcol;  \
173ac7a638eSSatish Balay     ap[bs2*_i + bs*cidx + ridx] = value;  \
174ac7a638eSSatish Balay b_noinsert:; \
175ac7a638eSSatish Balay     bilen[brow] = nrow; \
176ac7a638eSSatish Balay   }
177ac7a638eSSatish Balay 
1784a2ae208SSatish Balay #undef __FUNCT__
1794a2ae208SSatish Balay #define __FUNCT__ "MatSetValues_MPIBAIJ"
180b24ad042SBarry Smith PetscErrorCode MatSetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
18157b952d6SSatish Balay {
18257b952d6SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
18393fea6afSBarry Smith   MatScalar      value;
184ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
185dfbe8321SBarry Smith   PetscErrorCode ierr;
186b24ad042SBarry Smith   PetscInt       i,j,row,col;
187d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
188d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,cstart_orig=mat->cmap->rstart;
189d0f46423SBarry Smith   PetscInt       cend_orig  =mat->cmap->rend,bs=mat->rmap->bs;
19057b952d6SSatish Balay 
191eada6651SSatish Balay   /* Some Variables required in the macro */
19280c1aa95SSatish Balay   Mat         A     = baij->A;
19380c1aa95SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ*)(A)->data;
194b24ad042SBarry Smith   PetscInt    *aimax=a->imax,*ai=a->i,*ailen=a->ilen,*aj=a->j;
1953eda8832SBarry Smith   MatScalar   *aa   =a->a;
196ac7a638eSSatish Balay 
197ac7a638eSSatish Balay   Mat         B     = baij->B;
198ac7a638eSSatish Balay   Mat_SeqBAIJ *b    = (Mat_SeqBAIJ*)(B)->data;
199b24ad042SBarry Smith   PetscInt    *bimax=b->imax,*bi=b->i,*bilen=b->ilen,*bj=b->j;
2003eda8832SBarry Smith   MatScalar   *ba   =b->a;
201ac7a638eSSatish Balay 
202b24ad042SBarry Smith   PetscInt  *rp,ii,nrow,_i,rmax,N,brow,bcol;
203b24ad042SBarry Smith   PetscInt  low,high,t,ridx,cidx,bs2=a->bs2;
2043eda8832SBarry Smith   MatScalar *ap,*bap;
20580c1aa95SSatish Balay 
206d64ed03dSBarry Smith   PetscFunctionBegin;
20757b952d6SSatish Balay   for (i=0; i<m; i++) {
2085ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2092515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
210e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
211639f9d9dSBarry Smith #endif
21257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
21357b952d6SSatish Balay       row = im[i] - rstart_orig;
21457b952d6SSatish Balay       for (j=0; j<n; j++) {
21557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
21657b952d6SSatish Balay           col = in[j] - cstart_orig;
217db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
218db4deed7SKarl Rupp           else             value = v[i+j*m];
219d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row,col,value,addv,im[i],in[j]);
22080c1aa95SSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->A,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
22173959e64SBarry Smith         } else if (in[j] < 0) continue;
2222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
223660746e0SBarry Smith         else if (in[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",in[j],mat->cmap->N-1);
224639f9d9dSBarry Smith #endif
22557b952d6SSatish Balay         else {
22657b952d6SSatish Balay           if (mat->was_assembled) {
227905e6a2fSBarry Smith             if (!baij->colmap) {
228ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
229905e6a2fSBarry Smith             }
230aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2310f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]/bs + 1,&col);CHKERRQ(ierr);
232bba1ac68SSatish Balay             col  = col - 1;
23348e59246SSatish Balay #else
234bba1ac68SSatish Balay             col = baij->colmap[in[j]/bs] - 1;
23548e59246SSatish Balay #endif
236c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
237ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
2388295de27SSatish Balay               col  =  in[j];
2399bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2409bf004c3SSatish Balay               B    = baij->B;
2419bf004c3SSatish Balay               b    = (Mat_SeqBAIJ*)(B)->data;
2429bf004c3SSatish Balay               bimax=b->imax;bi=b->i;bilen=b->ilen;bj=b->j;
2439bf004c3SSatish Balay               ba   =b->a;
244c9ef50b2SBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new nonzero (%D, %D) into matrix", im[i], in[j]);
245c9ef50b2SBarry Smith             else col += in[j]%bs;
2468295de27SSatish Balay           } else col = in[j];
247db4deed7SKarl Rupp           if (roworiented) value = v[i*n+j];
248db4deed7SKarl Rupp           else             value = v[i+j*m];
249d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row,col,value,addv,im[i],in[j]);
25090da58bdSSatish Balay           /* ierr = MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv);CHKERRQ(ierr); */
25157b952d6SSatish Balay         }
25257b952d6SSatish Balay       }
253d64ed03dSBarry Smith     } else {
2544cb17eb5SBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
25590f02eecSBarry Smith       if (!baij->donotstash) {
2565080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
257ff2fd236SBarry Smith         if (roworiented) {
258b400d20cSBarry Smith           ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
259ff2fd236SBarry Smith         } else {
260b400d20cSBarry Smith           ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
26157b952d6SSatish Balay         }
26257b952d6SSatish Balay       }
26357b952d6SSatish Balay     }
26490f02eecSBarry Smith   }
2653a40ed3dSBarry Smith   PetscFunctionReturn(0);
26657b952d6SSatish Balay }
26757b952d6SSatish Balay 
2684a2ae208SSatish Balay #undef __FUNCT__
269880c6e6aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_SeqBAIJ_Inlined"
2708ab52850SBarry Smith PETSC_STATIC_INLINE PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A,PetscInt row,PetscInt col,const PetscScalar v[],InsertMode is,PetscInt orow,PetscInt ocol)
271880c6e6aSBarry Smith {
272880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ*)A->data;
2738ab52850SBarry Smith   PetscInt          *rp,low,high,t,ii,jj,nrow,i,rmax,N;
274880c6e6aSBarry Smith   PetscInt          *imax=a->imax,*ai=a->i,*ailen=a->ilen;
275880c6e6aSBarry Smith   PetscErrorCode    ierr;
2768ab52850SBarry Smith   PetscInt          *aj        =a->j,nonew=a->nonew,bs2=a->bs2,bs=A->rmap->bs;
277880c6e6aSBarry Smith   PetscBool         roworiented=a->roworiented;
278880c6e6aSBarry Smith   const PetscScalar *value     = v;
279880c6e6aSBarry Smith   MatScalar         *ap,*aa = a->a,*bap;
280880c6e6aSBarry Smith 
281880c6e6aSBarry Smith   PetscFunctionBegin;
282880c6e6aSBarry Smith   rp   = aj + ai[row];
283880c6e6aSBarry Smith   ap   = aa + bs2*ai[row];
284880c6e6aSBarry Smith   rmax = imax[row];
285880c6e6aSBarry Smith   nrow = ailen[row];
286880c6e6aSBarry Smith   low  = 0;
287880c6e6aSBarry Smith   high = nrow;
2888ab52850SBarry Smith   value = v;
2898ab52850SBarry Smith   low = 0;
2908ab52850SBarry Smith   high = nrow;
291880c6e6aSBarry Smith   while (high-low > 7) {
292880c6e6aSBarry Smith     t = (low+high)/2;
293880c6e6aSBarry Smith     if (rp[t] > col) high = t;
294880c6e6aSBarry Smith     else             low  = t;
295880c6e6aSBarry Smith   }
296880c6e6aSBarry Smith   for (i=low; i<high; i++) {
297880c6e6aSBarry Smith     if (rp[i] > col) break;
298880c6e6aSBarry Smith     if (rp[i] == col) {
299880c6e6aSBarry Smith       bap = ap +  bs2*i;
300880c6e6aSBarry Smith       if (roworiented) {
301880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3028ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
303880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
304880c6e6aSBarry Smith               bap[jj] += *value++;
305880c6e6aSBarry Smith             }
306880c6e6aSBarry Smith           }
307880c6e6aSBarry Smith         } else {
3088ab52850SBarry Smith           for (ii=0; ii<bs; ii++) {
309880c6e6aSBarry Smith             for (jj=ii; jj<bs2; jj+=bs) {
310880c6e6aSBarry Smith               bap[jj] = *value++;
311880c6e6aSBarry Smith             }
312880c6e6aSBarry Smith           }
313880c6e6aSBarry Smith         }
314880c6e6aSBarry Smith       } else {
315880c6e6aSBarry Smith         if (is == ADD_VALUES) {
3168ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
317880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
318880c6e6aSBarry Smith               bap[jj] += value[jj];
319880c6e6aSBarry Smith             }
320880c6e6aSBarry Smith             bap += bs;
321880c6e6aSBarry Smith           }
322880c6e6aSBarry Smith         } else {
3238ab52850SBarry Smith           for (ii=0; ii<bs; ii++,value+=bs) {
324880c6e6aSBarry Smith             for (jj=0; jj<bs; jj++) {
325880c6e6aSBarry Smith               bap[jj]  = value[jj];
326880c6e6aSBarry Smith             }
327880c6e6aSBarry Smith             bap += bs;
328880c6e6aSBarry Smith           }
329880c6e6aSBarry Smith         }
330880c6e6aSBarry Smith       }
331880c6e6aSBarry Smith       goto noinsert2;
332880c6e6aSBarry Smith     }
333880c6e6aSBarry Smith   }
334880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
335880c6e6aSBarry Smith   if (nonew == -1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new global block indexed nonzero block (%D, %D) in the matrix", orow, ocol);
336880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A,a->mbs,bs2,nrow,row,col,rmax,aa,ai,aj,rp,ap,imax,nonew,MatScalar);
337880c6e6aSBarry Smith   N = nrow++ - 1; high++;
338880c6e6aSBarry Smith   /* shift up all the later entries in this row */
339880c6e6aSBarry Smith   for (ii=N; ii>=i; ii--) {
340880c6e6aSBarry Smith     rp[ii+1] = rp[ii];
341880c6e6aSBarry Smith     ierr     = PetscMemcpy(ap+bs2*(ii+1),ap+bs2*(ii),bs2*sizeof(MatScalar));CHKERRQ(ierr);
342880c6e6aSBarry Smith   }
343880c6e6aSBarry Smith   if (N >= i) {
344880c6e6aSBarry Smith     ierr = PetscMemzero(ap+bs2*i,bs2*sizeof(MatScalar));CHKERRQ(ierr);
345880c6e6aSBarry Smith   }
346880c6e6aSBarry Smith   rp[i] = col;
347880c6e6aSBarry Smith   bap   = ap +  bs2*i;
348880c6e6aSBarry Smith   if (roworiented) {
3498ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
350880c6e6aSBarry Smith       for (jj=ii; jj<bs2; jj+=bs) {
351880c6e6aSBarry Smith         bap[jj] = *value++;
352880c6e6aSBarry Smith       }
353880c6e6aSBarry Smith     }
354880c6e6aSBarry Smith   } else {
3558ab52850SBarry Smith     for (ii=0; ii<bs; ii++) {
356880c6e6aSBarry Smith       for (jj=0; jj<bs; jj++) {
357880c6e6aSBarry Smith         *bap++ = *value++;
358880c6e6aSBarry Smith       }
359880c6e6aSBarry Smith     }
360880c6e6aSBarry Smith   }
361880c6e6aSBarry Smith   noinsert2:;
362880c6e6aSBarry Smith   ailen[row] = nrow;
363880c6e6aSBarry Smith   PetscFunctionReturn(0);
364880c6e6aSBarry Smith }
365880c6e6aSBarry Smith 
366880c6e6aSBarry Smith #undef __FUNCT__
36797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ"
3688ab52850SBarry Smith /*
3698ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3708ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3718ab52850SBarry Smith */
37297e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
373ab26458aSBarry Smith {
374ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
375dd6ea824SBarry Smith   const PetscScalar *value;
376f15d580aSBarry Smith   MatScalar         *barray     = baij->barray;
377ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
378dfbe8321SBarry Smith   PetscErrorCode    ierr;
379899cda47SBarry Smith   PetscInt          i,j,ii,jj,row,col,rstart=baij->rstartbs;
380899cda47SBarry Smith   PetscInt          rend=baij->rendbs,cstart=baij->cstartbs,stepval;
381d0f46423SBarry Smith   PetscInt          cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
382ab26458aSBarry Smith 
383b16ae2b1SBarry Smith   PetscFunctionBegin;
38430793edcSSatish Balay   if (!barray) {
385785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
38682502324SSatish Balay     baij->barray = barray;
38730793edcSSatish Balay   }
38830793edcSSatish Balay 
38926fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
39026fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
39126fbe8dcSKarl Rupp 
392ab26458aSBarry Smith   for (i=0; i<m; i++) {
3935ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3942515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
395bb003d0fSBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed row too large %D max %D",im[i],baij->Mbs-1);
396ab26458aSBarry Smith #endif
397ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
398ab26458aSBarry Smith       row = im[i] - rstart;
399ab26458aSBarry Smith       for (j=0; j<n; j++) {
40015b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
40115b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
402f15d580aSBarry Smith           barray = (MatScalar*)v + i*bs2;
40315b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
404f15d580aSBarry Smith           barray = (MatScalar*)v + j*bs2;
40515b57d14SSatish Balay         } else { /* Here a copy is required */
406ab26458aSBarry Smith           if (roworiented) {
40753ef36baSBarry Smith             value = v + (i*(stepval+bs) + j)*bs;
408ab26458aSBarry Smith           } else {
40953ef36baSBarry Smith             value = v + (j*(stepval+bs) + i)*bs;
410abef11f7SSatish Balay           }
41153ef36baSBarry Smith           for (ii=0; ii<bs; ii++,value+=bs+stepval) {
41226fbe8dcSKarl Rupp             for (jj=0; jj<bs; jj++) barray[jj] = value[jj];
41353ef36baSBarry Smith             barray += bs;
41447513183SBarry Smith           }
41530793edcSSatish Balay           barray -= bs2;
41615b57d14SSatish Balay         }
417abef11f7SSatish Balay 
418abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
419abef11f7SSatish Balay           col  = in[j] - cstart;
4208ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
42126fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
4222515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
4238ab52850SBarry Smith         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Block indexed column too large %D max %D",in[j],baij->Nbs-1);
424ab26458aSBarry Smith #endif
425ab26458aSBarry Smith         else {
426ab26458aSBarry Smith           if (mat->was_assembled) {
427ab26458aSBarry Smith             if (!baij->colmap) {
428ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
429ab26458aSBarry Smith             }
430a5eb4965SSatish Balay 
4312515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
432aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
433b24ad042SBarry Smith             { PetscInt data;
4340f5bd95cSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
435e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
436fa46199cSSatish Balay             }
43748e59246SSatish Balay #else
438e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
439a5eb4965SSatish Balay #endif
44048e59246SSatish Balay #endif
441aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4420f5bd95cSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
443fa46199cSSatish Balay             col  = (col - 1)/bs;
44448e59246SSatish Balay #else
445a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1)/bs;
44648e59246SSatish Balay #endif
4470e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->B->data))->nonew) {
448ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
449ab26458aSBarry Smith               col  =  in[j];
450bb003d0fSBarry Smith             } else if (col < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Inserting a new blocked indexed nonzero block (%D, %D) into matrix",im[i],in[j]);
451db4deed7SKarl Rupp           } else col = in[j];
4528ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
453ab26458aSBarry Smith         }
454ab26458aSBarry Smith       }
455d64ed03dSBarry Smith     } else {
456bb003d0fSBarry Smith       if (mat->nooffprocentries) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Setting off process block indexed row %D even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set",im[i]);
457ab26458aSBarry Smith       if (!baij->donotstash) {
458ff2fd236SBarry Smith         if (roworiented) {
4596fa18ffdSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
460ff2fd236SBarry Smith         } else {
4616fa18ffdSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
462ff2fd236SBarry Smith         }
463abef11f7SSatish Balay       }
464ab26458aSBarry Smith     }
465ab26458aSBarry Smith   }
4663a40ed3dSBarry Smith   PetscFunctionReturn(0);
467ab26458aSBarry Smith }
4686fa18ffdSBarry Smith 
4690bdbc534SSatish Balay #define HASH_KEY 0.6180339887
470b24ad042SBarry Smith #define HASH(size,key,tmp) (tmp = (key)*HASH_KEY,(PetscInt)((size)*(tmp-(PetscInt)tmp)))
471b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
472b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
4734a2ae208SSatish Balay #undef __FUNCT__
47497e5c40aSBarry Smith #define __FUNCT__ "MatSetValues_MPIBAIJ_HT"
47597e5c40aSBarry Smith PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
4760bdbc534SSatish Balay {
4770bdbc534SSatish Balay   Mat_MPIBAIJ    *baij       = (Mat_MPIBAIJ*)mat->data;
478ace3abfcSBarry Smith   PetscBool      roworiented = baij->roworiented;
479dfbe8321SBarry Smith   PetscErrorCode ierr;
480b24ad042SBarry Smith   PetscInt       i,j,row,col;
481d0f46423SBarry Smith   PetscInt       rstart_orig=mat->rmap->rstart;
482d0f46423SBarry Smith   PetscInt       rend_orig  =mat->rmap->rend,Nbs=baij->Nbs;
483d0f46423SBarry Smith   PetscInt       h1,key,size=baij->ht_size,bs=mat->rmap->bs,*HT=baij->ht,idx;
484329f5518SBarry Smith   PetscReal      tmp;
4853eda8832SBarry Smith   MatScalar      **HD = baij->hd,value;
4862515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
487b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
4884a15367fSSatish Balay #endif
4890bdbc534SSatish Balay 
4900bdbc534SSatish Balay   PetscFunctionBegin;
4910bdbc534SSatish Balay   for (i=0; i<m; i++) {
4922515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
493e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row");
494e32f2f54SBarry Smith     if (im[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],mat->rmap->N-1);
4950bdbc534SSatish Balay #endif
4960bdbc534SSatish Balay     row = im[i];
497c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4980bdbc534SSatish Balay       for (j=0; j<n; j++) {
4990bdbc534SSatish Balay         col = in[j];
500db4deed7SKarl Rupp         if (roworiented) value = v[i*n+j];
501db4deed7SKarl Rupp         else             value = v[i+j*m];
502b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
503c2760754SSatish Balay         key = (row/bs)*Nbs+(col/bs)+1;
504c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5050bdbc534SSatish Balay 
506c2760754SSatish Balay 
507c2760754SSatish Balay         idx = h1;
5082515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
509187ce0cbSSatish Balay         insert_ct++;
510187ce0cbSSatish Balay         total_ct++;
511187ce0cbSSatish Balay         if (HT[idx] != key) {
512187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
513187ce0cbSSatish Balay           if (idx == size) {
514187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
515f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
516187ce0cbSSatish Balay           }
517187ce0cbSSatish Balay         }
518187ce0cbSSatish Balay #else
519c2760754SSatish Balay         if (HT[idx] != key) {
520c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
521c2760754SSatish Balay           if (idx == size) {
522c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
523f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
524c2760754SSatish Balay           }
525c2760754SSatish Balay         }
526187ce0cbSSatish Balay #endif
527c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
528c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx]+ (col % bs)*bs + (row % bs)) += value;
529c2760754SSatish Balay         else                    *(HD[idx]+ (col % bs)*bs + (row % bs))  = value;
5300bdbc534SSatish Balay       }
53126fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
532ff2fd236SBarry Smith       if (roworiented) {
533b400d20cSBarry Smith         ierr = MatStashValuesRow_Private(&mat->stash,im[i],n,in,v+i*n,PETSC_FALSE);CHKERRQ(ierr);
534ff2fd236SBarry Smith       } else {
535b400d20cSBarry Smith         ierr = MatStashValuesCol_Private(&mat->stash,im[i],n,in,v+i,m,PETSC_FALSE);CHKERRQ(ierr);
5360bdbc534SSatish Balay       }
5370bdbc534SSatish Balay     }
5380bdbc534SSatish Balay   }
5392515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
540187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
541187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
542187ce0cbSSatish Balay #endif
5430bdbc534SSatish Balay   PetscFunctionReturn(0);
5440bdbc534SSatish Balay }
5450bdbc534SSatish Balay 
5464a2ae208SSatish Balay #undef __FUNCT__
54797e5c40aSBarry Smith #define __FUNCT__ "MatSetValuesBlocked_MPIBAIJ_HT"
54897e5c40aSBarry Smith PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat,PetscInt m,const PetscInt im[],PetscInt n,const PetscInt in[],const PetscScalar v[],InsertMode addv)
5490bdbc534SSatish Balay {
5500bdbc534SSatish Balay   Mat_MPIBAIJ       *baij       = (Mat_MPIBAIJ*)mat->data;
551ace3abfcSBarry Smith   PetscBool         roworiented = baij->roworiented;
552dfbe8321SBarry Smith   PetscErrorCode    ierr;
553b24ad042SBarry Smith   PetscInt          i,j,ii,jj,row,col;
554899cda47SBarry Smith   PetscInt          rstart=baij->rstartbs;
555d0f46423SBarry Smith   PetscInt          rend  =mat->rmap->rend,stepval,bs=mat->rmap->bs,bs2=baij->bs2,nbs2=n*bs2;
556b24ad042SBarry Smith   PetscInt          h1,key,size=baij->ht_size,idx,*HT=baij->ht,Nbs=baij->Nbs;
557329f5518SBarry Smith   PetscReal         tmp;
5583eda8832SBarry Smith   MatScalar         **HD = baij->hd,*baij_a;
559dd6ea824SBarry Smith   const PetscScalar *v_t,*value;
5602515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
561b24ad042SBarry Smith   PetscInt total_ct=baij->ht_total_ct,insert_ct=baij->ht_insert_ct;
5624a15367fSSatish Balay #endif
5630bdbc534SSatish Balay 
564d0a41580SSatish Balay   PetscFunctionBegin;
56526fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
56626fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
56726fbe8dcSKarl Rupp 
5680bdbc534SSatish Balay   for (i=0; i<m; i++) {
5692515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
570e32f2f54SBarry Smith     if (im[i] < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",im[i]);
571e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",im[i],baij->Mbs-1);
5720bdbc534SSatish Balay #endif
5730bdbc534SSatish Balay     row = im[i];
574ab715e2cSSatish Balay     v_t = v + i*nbs2;
575c2760754SSatish Balay     if (row >= rstart && row < rend) {
5760bdbc534SSatish Balay       for (j=0; j<n; j++) {
5770bdbc534SSatish Balay         col = in[j];
5780bdbc534SSatish Balay 
5790bdbc534SSatish Balay         /* Look up into the Hash Table */
580c2760754SSatish Balay         key = row*Nbs+col+1;
581c2760754SSatish Balay         h1  = HASH(size,key,tmp);
5820bdbc534SSatish Balay 
583c2760754SSatish Balay         idx = h1;
5842515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
585187ce0cbSSatish Balay         total_ct++;
586187ce0cbSSatish Balay         insert_ct++;
587187ce0cbSSatish Balay         if (HT[idx] != key) {
588187ce0cbSSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++,total_ct++) ;
589187ce0cbSSatish Balay           if (idx == size) {
590187ce0cbSSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++,total_ct++) ;
591f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
592187ce0cbSSatish Balay           }
593187ce0cbSSatish Balay         }
594187ce0cbSSatish Balay #else
595c2760754SSatish Balay         if (HT[idx] != key) {
596c2760754SSatish Balay           for (idx=h1; (idx<size) && (HT[idx]!=key); idx++) ;
597c2760754SSatish Balay           if (idx == size) {
598c2760754SSatish Balay             for (idx=0; (idx<h1) && (HT[idx]!=key); idx++) ;
599f23aa3ddSBarry Smith             if (idx == h1) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"(%D,%D) has no entry in the hash table", row, col);
600c2760754SSatish Balay           }
601c2760754SSatish Balay         }
602187ce0cbSSatish Balay #endif
603c2760754SSatish Balay         baij_a = HD[idx];
6040bdbc534SSatish Balay         if (roworiented) {
605c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
606187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
607187ce0cbSSatish Balay           value = v_t;
608187ce0cbSSatish Balay           v_t  += bs;
609fef45726SSatish Balay           if (addv == ADD_VALUES) {
610c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
611c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
612fef45726SSatish Balay                 baij_a[jj] += *value++;
613b4cc0f5aSSatish Balay               }
614b4cc0f5aSSatish Balay             }
615fef45726SSatish Balay           } else {
616c2760754SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval) {
617c2760754SSatish Balay               for (jj=ii; jj<bs2; jj+=bs) {
618fef45726SSatish Balay                 baij_a[jj] = *value++;
619fef45726SSatish Balay               }
620fef45726SSatish Balay             }
621fef45726SSatish Balay           }
6220bdbc534SSatish Balay         } else {
6230bdbc534SSatish Balay           value = v + j*(stepval+bs)*bs + i*bs;
624fef45726SSatish Balay           if (addv == ADD_VALUES) {
625b4cc0f5aSSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
6260bdbc534SSatish Balay               for (jj=0; jj<bs; jj++) {
627fef45726SSatish Balay                 baij_a[jj] += *value++;
628fef45726SSatish Balay               }
629fef45726SSatish Balay             }
630fef45726SSatish Balay           } else {
631fef45726SSatish Balay             for (ii=0; ii<bs; ii++,value+=stepval,baij_a+=bs) {
632fef45726SSatish Balay               for (jj=0; jj<bs; jj++) {
633fef45726SSatish Balay                 baij_a[jj] = *value++;
634fef45726SSatish Balay               }
635b4cc0f5aSSatish Balay             }
6360bdbc534SSatish Balay           }
6370bdbc534SSatish Balay         }
6380bdbc534SSatish Balay       }
6390bdbc534SSatish Balay     } else {
6400bdbc534SSatish Balay       if (!baij->donotstash) {
6410bdbc534SSatish Balay         if (roworiented) {
6428798bf22SSatish Balay           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6430bdbc534SSatish Balay         } else {
6448798bf22SSatish Balay           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
6450bdbc534SSatish Balay         }
6460bdbc534SSatish Balay       }
6470bdbc534SSatish Balay     }
6480bdbc534SSatish Balay   }
6492515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
650187ce0cbSSatish Balay   baij->ht_total_ct  = total_ct;
651187ce0cbSSatish Balay   baij->ht_insert_ct = insert_ct;
652187ce0cbSSatish Balay #endif
6530bdbc534SSatish Balay   PetscFunctionReturn(0);
6540bdbc534SSatish Balay }
655133cdb44SSatish Balay 
6564a2ae208SSatish Balay #undef __FUNCT__
6574a2ae208SSatish Balay #define __FUNCT__ "MatGetValues_MPIBAIJ"
658b24ad042SBarry Smith PetscErrorCode MatGetValues_MPIBAIJ(Mat mat,PetscInt m,const PetscInt idxm[],PetscInt n,const PetscInt idxn[],PetscScalar v[])
659d6de1c52SSatish Balay {
660d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
6616849ba73SBarry Smith   PetscErrorCode ierr;
662d0f46423SBarry Smith   PetscInt       bs       = mat->rmap->bs,i,j,bsrstart = mat->rmap->rstart,bsrend = mat->rmap->rend;
663d0f46423SBarry Smith   PetscInt       bscstart = mat->cmap->rstart,bscend = mat->cmap->rend,row,col,data;
664d6de1c52SSatish Balay 
665133cdb44SSatish Balay   PetscFunctionBegin;
666d6de1c52SSatish Balay   for (i=0; i<m; i++) {
667e32f2f54SBarry Smith     if (idxm[i] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative row: %D",idxm[i]);*/
668e32f2f54SBarry Smith     if (idxm[i] >= mat->rmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large: row %D max %D",idxm[i],mat->rmap->N-1);
669d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
670d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
671d6de1c52SSatish Balay       for (j=0; j<n; j++) {
672e32f2f54SBarry Smith         if (idxn[j] < 0) continue; /* SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Negative column: %D",idxn[j]); */
673e32f2f54SBarry Smith         if (idxn[j] >= mat->cmap->N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large: col %D max %D",idxn[j],mat->cmap->N-1);
674d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
675d6de1c52SSatish Balay           col  = idxn[j] - bscstart;
67698dd23e9SBarry Smith           ierr = MatGetValues_SeqBAIJ(baij->A,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
677d64ed03dSBarry Smith         } else {
678905e6a2fSBarry Smith           if (!baij->colmap) {
679ab9863d7SBarry Smith             ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
680905e6a2fSBarry Smith           }
681aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6820f5bd95cSBarry Smith           ierr = PetscTableFind(baij->colmap,idxn[j]/bs+1,&data);CHKERRQ(ierr);
683fa46199cSSatish Balay           data--;
68448e59246SSatish Balay #else
68548e59246SSatish Balay           data = baij->colmap[idxn[j]/bs]-1;
68648e59246SSatish Balay #endif
68748e59246SSatish Balay           if ((data < 0) || (baij->garray[data/bs] != idxn[j]/bs)) *(v+i*n+j) = 0.0;
688d9d09a02SSatish Balay           else {
68948e59246SSatish Balay             col  = data + idxn[j]%bs;
69098dd23e9SBarry Smith             ierr = MatGetValues_SeqBAIJ(baij->B,1,&row,1,&col,v+i*n+j);CHKERRQ(ierr);
691d6de1c52SSatish Balay           }
692d6de1c52SSatish Balay         }
693d6de1c52SSatish Balay       }
694f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local values currently supported");
695d6de1c52SSatish Balay   }
6963a40ed3dSBarry Smith   PetscFunctionReturn(0);
697d6de1c52SSatish Balay }
698d6de1c52SSatish Balay 
6994a2ae208SSatish Balay #undef __FUNCT__
7004a2ae208SSatish Balay #define __FUNCT__ "MatNorm_MPIBAIJ"
701dfbe8321SBarry Smith PetscErrorCode MatNorm_MPIBAIJ(Mat mat,NormType type,PetscReal *nrm)
702d6de1c52SSatish Balay {
703d6de1c52SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
704d6de1c52SSatish Balay   Mat_SeqBAIJ    *amat = (Mat_SeqBAIJ*)baij->A->data,*bmat = (Mat_SeqBAIJ*)baij->B->data;
705dfbe8321SBarry Smith   PetscErrorCode ierr;
706d0f46423SBarry Smith   PetscInt       i,j,bs2=baij->bs2,bs=baij->A->rmap->bs,nz,row,col;
707329f5518SBarry Smith   PetscReal      sum = 0.0;
7083eda8832SBarry Smith   MatScalar      *v;
709d6de1c52SSatish Balay 
710d64ed03dSBarry Smith   PetscFunctionBegin;
711d6de1c52SSatish Balay   if (baij->size == 1) {
712064f8208SBarry Smith     ierr =  MatNorm(baij->A,type,nrm);CHKERRQ(ierr);
713d6de1c52SSatish Balay   } else {
714d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
715d6de1c52SSatish Balay       v  = amat->a;
7168a62d963SHong Zhang       nz = amat->nz*bs2;
7178a62d963SHong Zhang       for (i=0; i<nz; i++) {
718329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
719d6de1c52SSatish Balay       }
720d6de1c52SSatish Balay       v  = bmat->a;
7218a62d963SHong Zhang       nz = bmat->nz*bs2;
7228a62d963SHong Zhang       for (i=0; i<nz; i++) {
723329f5518SBarry Smith         sum += PetscRealPart(PetscConj(*v)*(*v)); v++;
724d6de1c52SSatish Balay       }
725b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7268f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
7278a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
7288a62d963SHong Zhang       PetscReal *tmp,*tmp2;
729899cda47SBarry Smith       PetscInt  *jj,*garray=baij->garray,cstart=baij->rstartbs;
730dcca6d9dSJed Brown       ierr = PetscMalloc2(mat->cmap->N,&tmp,mat->cmap->N,&tmp2);CHKERRQ(ierr);
731d0f46423SBarry Smith       ierr = PetscMemzero(tmp,mat->cmap->N*sizeof(PetscReal));CHKERRQ(ierr);
7328a62d963SHong Zhang       v    = amat->a; jj = amat->j;
7338a62d963SHong Zhang       for (i=0; i<amat->nz; i++) {
7348a62d963SHong Zhang         for (j=0; j<bs; j++) {
7358a62d963SHong Zhang           col = bs*(cstart + *jj) + j; /* column index */
7368a62d963SHong Zhang           for (row=0; row<bs; row++) {
7378a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v);  v++;
7388a62d963SHong Zhang           }
7398a62d963SHong Zhang         }
7408a62d963SHong Zhang         jj++;
7418a62d963SHong Zhang       }
7428a62d963SHong Zhang       v = bmat->a; jj = bmat->j;
7438a62d963SHong Zhang       for (i=0; i<bmat->nz; i++) {
7448a62d963SHong Zhang         for (j=0; j<bs; j++) {
7458a62d963SHong Zhang           col = bs*garray[*jj] + j;
7468a62d963SHong Zhang           for (row=0; row<bs; row++) {
7478a62d963SHong Zhang             tmp[col] += PetscAbsScalar(*v); v++;
7488a62d963SHong Zhang           }
7498a62d963SHong Zhang         }
7508a62d963SHong Zhang         jj++;
7518a62d963SHong Zhang       }
752b2566f29SBarry Smith       ierr = MPIU_Allreduce(tmp,tmp2,mat->cmap->N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
7538a62d963SHong Zhang       *nrm = 0.0;
754d0f46423SBarry Smith       for (j=0; j<mat->cmap->N; j++) {
7558a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
7568a62d963SHong Zhang       }
757fca92195SBarry Smith       ierr = PetscFree2(tmp,tmp2);CHKERRQ(ierr);
7588a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
759577dd1f9SKris Buschelman       PetscReal *sums;
760785e854fSJed Brown       ierr = PetscMalloc1(bs,&sums);CHKERRQ(ierr);
7618a62d963SHong Zhang       sum  = 0.0;
7628a62d963SHong Zhang       for (j=0; j<amat->mbs; j++) {
7638a62d963SHong Zhang         for (row=0; row<bs; row++) sums[row] = 0.0;
7648a62d963SHong Zhang         v  = amat->a + bs2*amat->i[j];
7658a62d963SHong Zhang         nz = amat->i[j+1]-amat->i[j];
7668a62d963SHong Zhang         for (i=0; i<nz; i++) {
7678a62d963SHong Zhang           for (col=0; col<bs; col++) {
7688a62d963SHong Zhang             for (row=0; row<bs; row++) {
7698a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7708a62d963SHong Zhang             }
7718a62d963SHong Zhang           }
7728a62d963SHong Zhang         }
7738a62d963SHong Zhang         v  = bmat->a + bs2*bmat->i[j];
7748a62d963SHong Zhang         nz = bmat->i[j+1]-bmat->i[j];
7758a62d963SHong Zhang         for (i=0; i<nz; i++) {
7768a62d963SHong Zhang           for (col=0; col<bs; col++) {
7778a62d963SHong Zhang             for (row=0; row<bs; row++) {
7788a62d963SHong Zhang               sums[row] += PetscAbsScalar(*v); v++;
7798a62d963SHong Zhang             }
7808a62d963SHong Zhang           }
7818a62d963SHong Zhang         }
7828a62d963SHong Zhang         for (row=0; row<bs; row++) {
7838a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7848a62d963SHong Zhang         }
7858a62d963SHong Zhang       }
786b2566f29SBarry Smith       ierr = MPIU_Allreduce(&sum,nrm,1,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
787577dd1f9SKris Buschelman       ierr = PetscFree(sums);CHKERRQ(ierr);
788ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat),PETSC_ERR_SUP,"No support for this norm yet");
789d64ed03dSBarry Smith   }
7903a40ed3dSBarry Smith   PetscFunctionReturn(0);
791d6de1c52SSatish Balay }
79257b952d6SSatish Balay 
793fef45726SSatish Balay /*
794fef45726SSatish Balay   Creates the hash table, and sets the table
795fef45726SSatish Balay   This table is created only once.
796fef45726SSatish Balay   If new entried need to be added to the matrix
797fef45726SSatish Balay   then the hash table has to be destroyed and
798fef45726SSatish Balay   recreated.
799fef45726SSatish Balay */
8004a2ae208SSatish Balay #undef __FUNCT__
8014a2ae208SSatish Balay #define __FUNCT__ "MatCreateHashTable_MPIBAIJ_Private"
802dfbe8321SBarry Smith PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat,PetscReal factor)
803596b8d2eSBarry Smith {
804596b8d2eSBarry Smith   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
805596b8d2eSBarry Smith   Mat            A     = baij->A,B=baij->B;
806596b8d2eSBarry Smith   Mat_SeqBAIJ    *a    = (Mat_SeqBAIJ*)A->data,*b=(Mat_SeqBAIJ*)B->data;
807b24ad042SBarry Smith   PetscInt       i,j,k,nz=a->nz+b->nz,h1,*ai=a->i,*aj=a->j,*bi=b->i,*bj=b->j;
8086849ba73SBarry Smith   PetscErrorCode ierr;
809fca92195SBarry Smith   PetscInt       ht_size,bs2=baij->bs2,rstart=baij->rstartbs;
810899cda47SBarry Smith   PetscInt       cstart=baij->cstartbs,*garray=baij->garray,row,col,Nbs=baij->Nbs;
811b24ad042SBarry Smith   PetscInt       *HT,key;
8123eda8832SBarry Smith   MatScalar      **HD;
813329f5518SBarry Smith   PetscReal      tmp;
8146cf91177SBarry Smith #if defined(PETSC_USE_INFO)
815b24ad042SBarry Smith   PetscInt ct=0,max=0;
8164a15367fSSatish Balay #endif
817fef45726SSatish Balay 
818d64ed03dSBarry Smith   PetscFunctionBegin;
819fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
820fef45726SSatish Balay 
821fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor*nz);
822fca92195SBarry Smith   ht_size       = baij->ht_size;
8230bdbc534SSatish Balay 
824fef45726SSatish Balay   /* Allocate Memory for Hash Table */
8251795a4d1SJed Brown   ierr = PetscCalloc2(ht_size,&baij->hd,ht_size,&baij->ht);CHKERRQ(ierr);
826b9e4cc15SSatish Balay   HD   = baij->hd;
827a07cd24cSSatish Balay   HT   = baij->ht;
828b9e4cc15SSatish Balay 
829596b8d2eSBarry Smith   /* Loop Over A */
8300bdbc534SSatish Balay   for (i=0; i<a->mbs; i++) {
831596b8d2eSBarry Smith     for (j=ai[i]; j<ai[i+1]; j++) {
8320bdbc534SSatish Balay       row = i+rstart;
8330bdbc534SSatish Balay       col = aj[j]+cstart;
834596b8d2eSBarry Smith 
835187ce0cbSSatish Balay       key = row*Nbs + col + 1;
836fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
837fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
838fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
839fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
840fca92195SBarry Smith           HD[(h1+k)%ht_size] = a->a + j*bs2;
841596b8d2eSBarry Smith           break;
8426cf91177SBarry Smith #if defined(PETSC_USE_INFO)
843187ce0cbSSatish Balay         } else {
844187ce0cbSSatish Balay           ct++;
845187ce0cbSSatish Balay #endif
846596b8d2eSBarry Smith         }
847187ce0cbSSatish Balay       }
8486cf91177SBarry Smith #if defined(PETSC_USE_INFO)
849187ce0cbSSatish Balay       if (k> max) max = k;
850187ce0cbSSatish Balay #endif
851596b8d2eSBarry Smith     }
852596b8d2eSBarry Smith   }
853596b8d2eSBarry Smith   /* Loop Over B */
8540bdbc534SSatish Balay   for (i=0; i<b->mbs; i++) {
855596b8d2eSBarry Smith     for (j=bi[i]; j<bi[i+1]; j++) {
8560bdbc534SSatish Balay       row = i+rstart;
8570bdbc534SSatish Balay       col = garray[bj[j]];
858187ce0cbSSatish Balay       key = row*Nbs + col + 1;
859fca92195SBarry Smith       h1  = HASH(ht_size,key,tmp);
860fca92195SBarry Smith       for (k=0; k<ht_size; k++) {
861fca92195SBarry Smith         if (!HT[(h1+k)%ht_size]) {
862fca92195SBarry Smith           HT[(h1+k)%ht_size] = key;
863fca92195SBarry Smith           HD[(h1+k)%ht_size] = b->a + j*bs2;
864596b8d2eSBarry Smith           break;
8656cf91177SBarry Smith #if defined(PETSC_USE_INFO)
866187ce0cbSSatish Balay         } else {
867187ce0cbSSatish Balay           ct++;
868187ce0cbSSatish Balay #endif
869596b8d2eSBarry Smith         }
870187ce0cbSSatish Balay       }
8716cf91177SBarry Smith #if defined(PETSC_USE_INFO)
872187ce0cbSSatish Balay       if (k> max) max = k;
873187ce0cbSSatish Balay #endif
874596b8d2eSBarry Smith     }
875596b8d2eSBarry Smith   }
876596b8d2eSBarry Smith 
877596b8d2eSBarry Smith   /* Print Summary */
8786cf91177SBarry Smith #if defined(PETSC_USE_INFO)
879fca92195SBarry Smith   for (i=0,j=0; i<ht_size; i++) {
88026fbe8dcSKarl Rupp     if (HT[i]) j++;
881c38d4ed2SBarry Smith   }
8821e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Average Search = %5.2f,max search = %D\n",(!j)? 0.0:((PetscReal)(ct+j))/j,max);CHKERRQ(ierr);
883187ce0cbSSatish Balay #endif
8843a40ed3dSBarry Smith   PetscFunctionReturn(0);
885596b8d2eSBarry Smith }
88657b952d6SSatish Balay 
8874a2ae208SSatish Balay #undef __FUNCT__
8884a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyBegin_MPIBAIJ"
889dfbe8321SBarry Smith PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat,MatAssemblyType mode)
890bbb85fb3SSatish Balay {
891bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
892dfbe8321SBarry Smith   PetscErrorCode ierr;
893b24ad042SBarry Smith   PetscInt       nstash,reallocs;
894bbb85fb3SSatish Balay 
895bbb85fb3SSatish Balay   PetscFunctionBegin;
89626fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
897bbb85fb3SSatish Balay 
898d0f46423SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->stash,mat->rmap->range);CHKERRQ(ierr);
8991e2582c4SBarry Smith   ierr = MatStashScatterBegin_Private(mat,&mat->bstash,baij->rangebs);CHKERRQ(ierr);
9008798bf22SSatish Balay   ierr = MatStashGetInfo_Private(&mat->stash,&nstash,&reallocs);CHKERRQ(ierr);
9011e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Stash has %D entries,uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
90246680499SSatish Balay   ierr = MatStashGetInfo_Private(&mat->bstash,&nstash,&reallocs);CHKERRQ(ierr);
9031e2582c4SBarry Smith   ierr = PetscInfo2(mat,"Block-Stash has %D entries, uses %D mallocs.\n",nstash,reallocs);CHKERRQ(ierr);
904bbb85fb3SSatish Balay   PetscFunctionReturn(0);
905bbb85fb3SSatish Balay }
906bbb85fb3SSatish Balay 
9074a2ae208SSatish Balay #undef __FUNCT__
9084a2ae208SSatish Balay #define __FUNCT__ "MatAssemblyEnd_MPIBAIJ"
909dfbe8321SBarry Smith PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat,MatAssemblyType mode)
910bbb85fb3SSatish Balay {
911bbb85fb3SSatish Balay   Mat_MPIBAIJ    *baij=(Mat_MPIBAIJ*)mat->data;
91291c97fd4SSatish Balay   Mat_SeqBAIJ    *a   =(Mat_SeqBAIJ*)baij->A->data;
9136849ba73SBarry Smith   PetscErrorCode ierr;
914b24ad042SBarry Smith   PetscInt       i,j,rstart,ncols,flg,bs2=baij->bs2;
915e44c0bd4SBarry Smith   PetscInt       *row,*col;
916ace3abfcSBarry Smith   PetscBool      r1,r2,r3,other_disassembled;
9173eda8832SBarry Smith   MatScalar      *val;
918b24ad042SBarry Smith   PetscMPIInt    n;
919bbb85fb3SSatish Balay 
920bbb85fb3SSatish Balay   PetscFunctionBegin;
9215fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
9224cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
923a2d1c673SSatish Balay     while (1) {
9248798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->stash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
925a2d1c673SSatish Balay       if (!flg) break;
926a2d1c673SSatish Balay 
927bbb85fb3SSatish Balay       for (i=0; i<n;) {
928bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
92926fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
93026fbe8dcSKarl Rupp           if (row[j] != rstart) break;
93126fbe8dcSKarl Rupp         }
932bbb85fb3SSatish Balay         if (j < n) ncols = j-i;
933bbb85fb3SSatish Balay         else       ncols = n-i;
934bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
9354b4eb8d3SJed Brown         ierr = MatSetValues_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i,mat->insertmode);CHKERRQ(ierr);
936bbb85fb3SSatish Balay         i    = j;
937bbb85fb3SSatish Balay       }
938bbb85fb3SSatish Balay     }
9398798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->stash);CHKERRQ(ierr);
940a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
941a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
942a2d1c673SSatish Balay        restore the original flags */
943a2d1c673SSatish Balay     r1 = baij->roworiented;
944a2d1c673SSatish Balay     r2 = a->roworiented;
94591c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ*)baij->B->data)->roworiented;
94626fbe8dcSKarl Rupp 
9477c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
9487c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
94926fbe8dcSKarl Rupp 
95091c97fd4SSatish Balay     (((Mat_SeqBAIJ*)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
951a2d1c673SSatish Balay     while (1) {
9528798bf22SSatish Balay       ierr = MatStashScatterGetMesg_Private(&mat->bstash,&n,&row,&col,&val,&flg);CHKERRQ(ierr);
953a2d1c673SSatish Balay       if (!flg) break;
954a2d1c673SSatish Balay 
955a2d1c673SSatish Balay       for (i=0; i<n;) {
956a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
95726fbe8dcSKarl Rupp         for (j=i,rstart=row[j]; j<n; j++) {
95826fbe8dcSKarl Rupp           if (row[j] != rstart) break;
95926fbe8dcSKarl Rupp         }
960a2d1c673SSatish Balay         if (j < n) ncols = j-i;
961a2d1c673SSatish Balay         else       ncols = n-i;
9624b4eb8d3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(mat,1,row+i,ncols,col+i,val+i*bs2,mat->insertmode);CHKERRQ(ierr);
963a2d1c673SSatish Balay         i    = j;
964a2d1c673SSatish Balay       }
965a2d1c673SSatish Balay     }
9668798bf22SSatish Balay     ierr = MatStashScatterEnd_Private(&mat->bstash);CHKERRQ(ierr);
96726fbe8dcSKarl Rupp 
968a2d1c673SSatish Balay     baij->roworiented = r1;
969a2d1c673SSatish Balay     a->roworiented    = r2;
97026fbe8dcSKarl Rupp 
97191c97fd4SSatish Balay     ((Mat_SeqBAIJ*)baij->B->data)->roworiented = r3; /* b->roworiented */
972bbb85fb3SSatish Balay   }
973bbb85fb3SSatish Balay 
974bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->A,mode);CHKERRQ(ierr);
975bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->A,mode);CHKERRQ(ierr);
976bbb85fb3SSatish Balay 
977bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
978bbb85fb3SSatish Balay      also disassemble ourselfs, in order that we may reassemble. */
979bbb85fb3SSatish Balay   /*
980bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
981bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
982bbb85fb3SSatish Balay   */
983bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ*)baij->B->data)->nonew) {
984b2566f29SBarry Smith     ierr = MPIU_Allreduce(&mat->was_assembled,&other_disassembled,1,MPIU_BOOL,MPI_PROD,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
985bbb85fb3SSatish Balay     if (mat->was_assembled && !other_disassembled) {
986ab9863d7SBarry Smith       ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
987bbb85fb3SSatish Balay     }
988bbb85fb3SSatish Balay   }
989bbb85fb3SSatish Balay 
990bbb85fb3SSatish Balay   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) {
991bbb85fb3SSatish Balay     ierr = MatSetUpMultiply_MPIBAIJ(mat);CHKERRQ(ierr);
992bbb85fb3SSatish Balay   }
993bbb85fb3SSatish Balay   ierr = MatAssemblyBegin(baij->B,mode);CHKERRQ(ierr);
994bbb85fb3SSatish Balay   ierr = MatAssemblyEnd(baij->B,mode);CHKERRQ(ierr);
995bbb85fb3SSatish Balay 
9966cf91177SBarry Smith #if defined(PETSC_USE_INFO)
997bbb85fb3SSatish Balay   if (baij->ht && mode== MAT_FINAL_ASSEMBLY) {
9981e2582c4SBarry Smith     ierr = PetscInfo1(mat,"Average Hash Table Search in MatSetValues = %5.2f\n",((PetscReal)baij->ht_total_ct)/baij->ht_insert_ct);CHKERRQ(ierr);
99926fbe8dcSKarl Rupp 
1000bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
1001bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
1002bbb85fb3SSatish Balay   }
1003bbb85fb3SSatish Balay #endif
1004bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
1005bbb85fb3SSatish Balay     ierr = MatCreateHashTable_MPIBAIJ_Private(mat,baij->ht_fact);CHKERRQ(ierr);
100626fbe8dcSKarl Rupp 
1007bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
1008bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
1009bbb85fb3SSatish Balay   }
1010bbb85fb3SSatish Balay 
1011fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
101226fbe8dcSKarl Rupp 
1013606d414cSSatish Balay   baij->rowvalues = 0;
10144f9cfa9eSBarry Smith 
10154f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
10164f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
1017e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
1018b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&mat->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1019e56f5c9eSBarry Smith   }
1020bbb85fb3SSatish Balay   PetscFunctionReturn(0);
1021bbb85fb3SSatish Balay }
102257b952d6SSatish Balay 
10237da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat,PetscViewer);
10249804daf3SBarry Smith #include <petscdraw.h>
10254a2ae208SSatish Balay #undef __FUNCT__
10264a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ_ASCIIorDraworSocket"
10276849ba73SBarry Smith static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat,PetscViewer viewer)
102857b952d6SSatish Balay {
102957b952d6SSatish Balay   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ*)mat->data;
1030dfbe8321SBarry Smith   PetscErrorCode    ierr;
10317da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
1032d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
1033ace3abfcSBarry Smith   PetscBool         iascii,isdraw;
1034b0a32e0cSBarry Smith   PetscViewer       sviewer;
1035f3ef73ceSBarry Smith   PetscViewerFormat format;
103657b952d6SSatish Balay 
1037d64ed03dSBarry Smith   PetscFunctionBegin;
1038251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1039251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
104032077d6dSBarry Smith   if (iascii) {
1041b0a32e0cSBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
1042456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
10434e220ebcSLois Curfman McInnes       MatInfo info;
1044ce94432eSBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1045d41123aaSBarry Smith       ierr = MatGetInfo(mat,MAT_LOCAL,&info);CHKERRQ(ierr);
10461575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
104777431f27SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Local rows %D nz %D nz alloced %D bs %D mem %D\n",
104816608c43SJed Brown                                                 rank,mat->rmap->n,(PetscInt)info.nz_used,(PetscInt)info.nz_allocated,mat->rmap->bs,(PetscInt)info.memory);CHKERRQ(ierr);
1049d132466eSBarry Smith       ierr = MatGetInfo(baij->A,MAT_LOCAL,&info);CHKERRQ(ierr);
1050e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] on-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1051d132466eSBarry Smith       ierr = MatGetInfo(baij->B,MAT_LOCAL,&info);CHKERRQ(ierr);
1052e6dd01d4SJed Brown       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] off-diagonal part: nz %D \n",rank,(PetscInt)info.nz_used);CHKERRQ(ierr);
1053b0a32e0cSBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
10541575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
105507d81ca4SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"Information on VecScatter used in matrix-vector product: \n");CHKERRQ(ierr);
105657b952d6SSatish Balay       ierr = VecScatterView(baij->Mvctx,viewer);CHKERRQ(ierr);
10573a40ed3dSBarry Smith       PetscFunctionReturn(0);
1058fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
105977431f27SBarry Smith       ierr = PetscViewerASCIIPrintf(viewer,"  block size is %D\n",bs);CHKERRQ(ierr);
10603a40ed3dSBarry Smith       PetscFunctionReturn(0);
106104929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
106204929863SHong Zhang       PetscFunctionReturn(0);
106357b952d6SSatish Balay     }
106457b952d6SSatish Balay   }
106557b952d6SSatish Balay 
10660f5bd95cSBarry Smith   if (isdraw) {
1067b0a32e0cSBarry Smith     PetscDraw draw;
1068ace3abfcSBarry Smith     PetscBool isnull;
1069b0a32e0cSBarry Smith     ierr = PetscViewerDrawGetDraw(viewer,0,&draw);CHKERRQ(ierr);
1070*45f3bb6eSLisandro Dalcin     ierr = PetscDrawIsNull(draw,&isnull);CHKERRQ(ierr);
1071*45f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
107257b952d6SSatish Balay   }
107357b952d6SSatish Balay 
10747da1fb6eSBarry Smith   {
107557b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
107657b952d6SSatish Balay     Mat         A;
107757b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1078d0f46423SBarry Smith     PetscInt    M = mat->rmap->N,N = mat->cmap->N,*ai,*aj,col,i,j,k,*rvals,mbs = baij->mbs;
10793eda8832SBarry Smith     MatScalar   *a;
10803e219373SBarry Smith     const char  *matname;
108157b952d6SSatish Balay 
1082f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1083f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
1084ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)mat),&A);CHKERRQ(ierr);
108557b952d6SSatish Balay     if (!rank) {
1086f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,M,N,M,N);CHKERRQ(ierr);
1087d64ed03dSBarry Smith     } else {
1088f69a0ea3SMatthew Knepley       ierr = MatSetSizes(A,0,0,M,N);CHKERRQ(ierr);
108957b952d6SSatish Balay     }
1090f204ca49SKris Buschelman     ierr = MatSetType(A,MATMPIBAIJ);CHKERRQ(ierr);
10910298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(A,mat->rmap->bs,0,NULL,0,NULL);CHKERRQ(ierr);
10922b82e772SSatish Balay     ierr = MatSetOption(A,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_FALSE);CHKERRQ(ierr);
10933bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)A);CHKERRQ(ierr);
109457b952d6SSatish Balay 
109557b952d6SSatish Balay     /* copy over the A part */
109657b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->A->data;
109757b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1098785e854fSJed Brown     ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
109957b952d6SSatish Balay 
110057b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1101899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
110226fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
110357b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
1104899cda47SBarry Smith         col = (baij->cstartbs+aj[j])*bs;
110557b952d6SSatish Balay         for (k=0; k<bs; k++) {
110697e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1107cee3aa6bSSatish Balay           col++; a += bs;
110857b952d6SSatish Balay         }
110957b952d6SSatish Balay       }
111057b952d6SSatish Balay     }
111157b952d6SSatish Balay     /* copy over the B part */
111257b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ*)baij->B->data;
111357b952d6SSatish Balay     ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
111457b952d6SSatish Balay     for (i=0; i<mbs; i++) {
1115899cda47SBarry Smith       rvals[0] = bs*(baij->rstartbs + i);
111626fbe8dcSKarl Rupp       for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
111757b952d6SSatish Balay       for (j=ai[i]; j<ai[i+1]; j++) {
111857b952d6SSatish Balay         col = baij->garray[aj[j]]*bs;
111957b952d6SSatish Balay         for (k=0; k<bs; k++) {
112097e5c40aSBarry Smith           ierr      = MatSetValues_MPIBAIJ(A,bs,rvals,1,&col,a,INSERT_VALUES);CHKERRQ(ierr);
1121cee3aa6bSSatish Balay           col++; a += bs;
112257b952d6SSatish Balay         }
112357b952d6SSatish Balay       }
112457b952d6SSatish Balay     }
1125606d414cSSatish Balay     ierr = PetscFree(rvals);CHKERRQ(ierr);
11266d4a8577SBarry Smith     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
11276d4a8577SBarry Smith     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
112855843e3eSBarry Smith     /*
112955843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1130b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
113155843e3eSBarry Smith     */
11323f08860eSBarry Smith     ierr = PetscViewerGetSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
1133ade3a672SBarry Smith     ierr = PetscObjectGetName((PetscObject)mat,&matname);CHKERRQ(ierr);
11343e219373SBarry Smith     if (!rank) {
1135ade3a672SBarry Smith       ierr = PetscObjectSetName((PetscObject)((Mat_MPIBAIJ*)(A->data))->A,matname);CHKERRQ(ierr);
11367da1fb6eSBarry Smith       ierr = MatView_SeqBAIJ(((Mat_MPIBAIJ*)(A->data))->A,sviewer);CHKERRQ(ierr);
113757b952d6SSatish Balay     }
11383f08860eSBarry Smith     ierr = PetscViewerRestoreSubViewer(viewer,PETSC_COMM_SELF,&sviewer);CHKERRQ(ierr);
11391575c14dSBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
11406bf464f9SBarry Smith     ierr = MatDestroy(&A);CHKERRQ(ierr);
114157b952d6SSatish Balay   }
11423a40ed3dSBarry Smith   PetscFunctionReturn(0);
114357b952d6SSatish Balay }
114457b952d6SSatish Balay 
11454a2ae208SSatish Balay #undef __FUNCT__
1146660746e0SBarry Smith #define __FUNCT__ "MatView_MPIBAIJ_Binary"
1147660746e0SBarry Smith static PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat,PetscViewer viewer)
1148660746e0SBarry Smith {
1149660746e0SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)mat->data;
1150660746e0SBarry Smith   Mat_SeqBAIJ    *A = (Mat_SeqBAIJ*)a->A->data;
1151660746e0SBarry Smith   Mat_SeqBAIJ    *B = (Mat_SeqBAIJ*)a->B->data;
1152660746e0SBarry Smith   PetscErrorCode ierr;
11535f48b12bSBarry Smith   PetscInt       i,*row_lens,*crow_lens,bs = mat->rmap->bs,j,k,bs2=a->bs2,header[4],nz,rlen;
1154e96a6426SSatish Balay   PetscInt       *range=0,nzmax,*column_indices,cnt,col,*garray = a->garray,cstart = mat->cmap->rstart/bs,len,pcnt,l,ll;
1155660746e0SBarry Smith   int            fd;
1156660746e0SBarry Smith   PetscScalar    *column_values;
1157660746e0SBarry Smith   FILE           *file;
1158660746e0SBarry Smith   PetscMPIInt    rank,size,tag = ((PetscObject)viewer)->tag;
1159638eb2ebSBarry Smith   PetscInt       message_count,flowcontrolcount;
1160660746e0SBarry Smith 
1161660746e0SBarry Smith   PetscFunctionBegin;
1162ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mat),&rank);CHKERRQ(ierr);
1163ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)mat),&size);CHKERRQ(ierr);
1164660746e0SBarry Smith   nz   = bs2*(A->nz + B->nz);
1165660746e0SBarry Smith   rlen = mat->rmap->n;
11665872f025SBarry Smith   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
1167660746e0SBarry Smith   if (!rank) {
1168660746e0SBarry Smith     header[0] = MAT_FILE_CLASSID;
1169660746e0SBarry Smith     header[1] = mat->rmap->N;
1170660746e0SBarry Smith     header[2] = mat->cmap->N;
117126fbe8dcSKarl Rupp 
1172ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,&header[3],1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1173660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,header,4,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1174660746e0SBarry Smith     /* get largest number of rows any processor has */
1175660746e0SBarry Smith     range = mat->rmap->range;
1176660746e0SBarry Smith     for (i=1; i<size; i++) {
1177660746e0SBarry Smith       rlen = PetscMax(rlen,range[i+1] - range[i]);
1178660746e0SBarry Smith     }
1179660746e0SBarry Smith   } else {
1180ce94432eSBarry Smith     ierr = MPI_Reduce(&nz,0,1,MPIU_INT,MPI_SUM,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1181660746e0SBarry Smith   }
1182660746e0SBarry Smith 
1183854ce69bSBarry Smith   ierr = PetscMalloc1(rlen/bs,&crow_lens);CHKERRQ(ierr);
1184660746e0SBarry Smith   /* compute lengths of each row  */
1185660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1186660746e0SBarry Smith     crow_lens[i] = A->i[i+1] - A->i[i] + B->i[i+1] - B->i[i];
1187660746e0SBarry Smith   }
1188660746e0SBarry Smith   /* store the row lengths to the file */
1189638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1190660746e0SBarry Smith   if (!rank) {
1191660746e0SBarry Smith     MPI_Status status;
1192785e854fSJed Brown     ierr = PetscMalloc1(rlen,&row_lens);CHKERRQ(ierr);
1193660746e0SBarry Smith     rlen = (range[1] - range[0])/bs;
1194660746e0SBarry Smith     for (i=0; i<rlen; i++) {
1195660746e0SBarry Smith       for (j=0; j<bs; j++) {
1196660746e0SBarry Smith         row_lens[i*bs+j] = bs*crow_lens[i];
1197660746e0SBarry Smith       }
1198660746e0SBarry Smith     }
1199660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1200660746e0SBarry Smith     for (i=1; i<size; i++) {
1201660746e0SBarry Smith       rlen = (range[i+1] - range[i])/bs;
1202639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1203ce94432eSBarry Smith       ierr = MPI_Recv(crow_lens,rlen,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1204660746e0SBarry Smith       for (k=0; k<rlen; k++) {
1205660746e0SBarry Smith         for (j=0; j<bs; j++) {
1206660746e0SBarry Smith           row_lens[k*bs+j] = bs*crow_lens[k];
1207660746e0SBarry Smith         }
1208660746e0SBarry Smith       }
1209660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,row_lens,bs*rlen,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1210660746e0SBarry Smith     }
1211639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1212660746e0SBarry Smith     ierr = PetscFree(row_lens);CHKERRQ(ierr);
1213660746e0SBarry Smith   } else {
1214639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1215ce94432eSBarry Smith     ierr = MPI_Send(crow_lens,mat->rmap->n/bs,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1216639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1217660746e0SBarry Smith   }
1218660746e0SBarry Smith   ierr = PetscFree(crow_lens);CHKERRQ(ierr);
1219660746e0SBarry Smith 
1220660746e0SBarry Smith   /* load up the local column indices. Include for all rows not just one for each block row since process 0 does not have the
1221660746e0SBarry Smith      information needed to make it for each row from a block row. This does require more communication but still not more than
1222660746e0SBarry Smith      the communication needed for the nonzero values  */
1223660746e0SBarry Smith   nzmax = nz; /*  space a largest processor needs */
1224ce94432eSBarry Smith   ierr  = MPI_Reduce(&nz,&nzmax,1,MPIU_INT,MPI_MAX,0,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1225785e854fSJed Brown   ierr  = PetscMalloc1(nzmax,&column_indices);CHKERRQ(ierr);
1226660746e0SBarry Smith   cnt   = 0;
1227660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1228660746e0SBarry Smith     pcnt = cnt;
1229660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1230660746e0SBarry Smith       if ((col = garray[B->j[j]]) > cstart) break;
1231660746e0SBarry Smith       for (l=0; l<bs; l++) {
1232660746e0SBarry Smith         column_indices[cnt++] = bs*col+l;
1233660746e0SBarry Smith       }
1234660746e0SBarry Smith     }
1235660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1236660746e0SBarry Smith       for (l=0; l<bs; l++) {
1237660746e0SBarry Smith         column_indices[cnt++] = bs*(A->j[k] + cstart)+l;
1238660746e0SBarry Smith       }
1239660746e0SBarry Smith     }
1240660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1241660746e0SBarry Smith       for (l=0; l<bs; l++) {
1242660746e0SBarry Smith         column_indices[cnt++] = bs*garray[B->j[j]]+l;
1243660746e0SBarry Smith       }
1244660746e0SBarry Smith     }
1245660746e0SBarry Smith     len = cnt - pcnt;
1246660746e0SBarry Smith     for (k=1; k<bs; k++) {
1247660746e0SBarry Smith       ierr = PetscMemcpy(&column_indices[cnt],&column_indices[pcnt],len*sizeof(PetscInt));CHKERRQ(ierr);
1248660746e0SBarry Smith       cnt += len;
1249660746e0SBarry Smith     }
1250660746e0SBarry Smith   }
1251660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1252660746e0SBarry Smith 
1253660746e0SBarry Smith   /* store the columns to the file */
1254638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1255660746e0SBarry Smith   if (!rank) {
1256660746e0SBarry Smith     MPI_Status status;
1257660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_indices,nz,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1258660746e0SBarry Smith     for (i=1; i<size; i++) {
1259639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1260ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1261ce94432eSBarry Smith       ierr = MPI_Recv(column_indices,cnt,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1262660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_indices,cnt,PETSC_INT,PETSC_TRUE);CHKERRQ(ierr);
1263660746e0SBarry Smith     }
1264639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1265660746e0SBarry Smith   } else {
1266639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1267ce94432eSBarry Smith     ierr = MPI_Send(&cnt,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1268ce94432eSBarry Smith     ierr = MPI_Send(column_indices,cnt,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1269639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1270660746e0SBarry Smith   }
1271660746e0SBarry Smith   ierr = PetscFree(column_indices);CHKERRQ(ierr);
1272660746e0SBarry Smith 
1273660746e0SBarry Smith   /* load up the numerical values */
1274785e854fSJed Brown   ierr = PetscMalloc1(nzmax,&column_values);CHKERRQ(ierr);
1275660746e0SBarry Smith   cnt  = 0;
1276660746e0SBarry Smith   for (i=0; i<a->mbs; i++) {
1277660746e0SBarry Smith     rlen = bs*(B->i[i+1] - B->i[i] + A->i[i+1] - A->i[i]);
1278660746e0SBarry Smith     for (j=B->i[i]; j<B->i[i+1]; j++) {
1279660746e0SBarry Smith       if (garray[B->j[j]] > cstart) break;
1280660746e0SBarry Smith       for (l=0; l<bs; l++) {
1281660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1282660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1283660746e0SBarry Smith         }
1284660746e0SBarry Smith       }
1285660746e0SBarry Smith       cnt += bs;
1286660746e0SBarry Smith     }
1287660746e0SBarry Smith     for (k=A->i[i]; k<A->i[i+1]; k++) {
1288660746e0SBarry Smith       for (l=0; l<bs; l++) {
1289660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1290660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = A->a[bs2*k+l+bs*ll];
1291660746e0SBarry Smith         }
1292660746e0SBarry Smith       }
1293660746e0SBarry Smith       cnt += bs;
1294660746e0SBarry Smith     }
1295660746e0SBarry Smith     for (; j<B->i[i+1]; j++) {
1296660746e0SBarry Smith       for (l=0; l<bs; l++) {
1297660746e0SBarry Smith         for (ll=0; ll<bs; ll++) {
1298660746e0SBarry Smith           column_values[cnt + l*rlen + ll] = B->a[bs2*j+l+bs*ll];
1299660746e0SBarry Smith         }
1300660746e0SBarry Smith       }
1301660746e0SBarry Smith       cnt += bs;
1302660746e0SBarry Smith     }
1303660746e0SBarry Smith     cnt += (bs-1)*rlen;
1304660746e0SBarry Smith   }
1305660746e0SBarry Smith   if (cnt != nz) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Internal PETSc error: cnt = %D nz = %D",cnt,nz);
1306660746e0SBarry Smith 
1307660746e0SBarry Smith   /* store the column values to the file */
1308638eb2ebSBarry Smith   ierr = PetscViewerFlowControlStart(viewer,&message_count,&flowcontrolcount);CHKERRQ(ierr);
1309660746e0SBarry Smith   if (!rank) {
1310660746e0SBarry Smith     MPI_Status status;
1311660746e0SBarry Smith     ierr = PetscBinaryWrite(fd,column_values,nz,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1312660746e0SBarry Smith     for (i=1; i<size; i++) {
1313639ff905SBarry Smith       ierr = PetscViewerFlowControlStepMaster(viewer,i,&message_count,flowcontrolcount);CHKERRQ(ierr);
1314ce94432eSBarry Smith       ierr = MPI_Recv(&cnt,1,MPIU_INT,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1315ce94432eSBarry Smith       ierr = MPI_Recv(column_values,cnt,MPIU_SCALAR,i,tag,PetscObjectComm((PetscObject)mat),&status);CHKERRQ(ierr);
1316660746e0SBarry Smith       ierr = PetscBinaryWrite(fd,column_values,cnt,PETSC_SCALAR,PETSC_TRUE);CHKERRQ(ierr);
1317660746e0SBarry Smith     }
1318639ff905SBarry Smith     ierr = PetscViewerFlowControlEndMaster(viewer,&message_count);CHKERRQ(ierr);
1319660746e0SBarry Smith   } else {
1320639ff905SBarry Smith     ierr = PetscViewerFlowControlStepWorker(viewer,rank,&message_count);CHKERRQ(ierr);
1321ce94432eSBarry Smith     ierr = MPI_Send(&nz,1,MPIU_INT,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1322ce94432eSBarry Smith     ierr = MPI_Send(column_values,nz,MPIU_SCALAR,0,tag,PetscObjectComm((PetscObject)mat));CHKERRQ(ierr);
1323639ff905SBarry Smith     ierr = PetscViewerFlowControlEndWorker(viewer,&message_count);CHKERRQ(ierr);
1324660746e0SBarry Smith   }
1325660746e0SBarry Smith   ierr = PetscFree(column_values);CHKERRQ(ierr);
1326660746e0SBarry Smith 
1327660746e0SBarry Smith   ierr = PetscViewerBinaryGetInfoPointer(viewer,&file);CHKERRQ(ierr);
1328660746e0SBarry Smith   if (file) {
1329660746e0SBarry Smith     fprintf(file,"-matload_block_size %d\n",(int)mat->rmap->bs);
1330660746e0SBarry Smith   }
1331660746e0SBarry Smith   PetscFunctionReturn(0);
1332660746e0SBarry Smith }
1333660746e0SBarry Smith 
1334660746e0SBarry Smith #undef __FUNCT__
13354a2ae208SSatish Balay #define __FUNCT__ "MatView_MPIBAIJ"
1336dfbe8321SBarry Smith PetscErrorCode MatView_MPIBAIJ(Mat mat,PetscViewer viewer)
133757b952d6SSatish Balay {
1338dfbe8321SBarry Smith   PetscErrorCode ierr;
1339ace3abfcSBarry Smith   PetscBool      iascii,isdraw,issocket,isbinary;
134057b952d6SSatish Balay 
1341d64ed03dSBarry Smith   PetscFunctionBegin;
1342251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
1343251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERDRAW,&isdraw);CHKERRQ(ierr);
1344251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERSOCKET,&issocket);CHKERRQ(ierr);
1345251f4c67SDmitry Karpeev   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERBINARY,&isbinary);CHKERRQ(ierr);
1346660746e0SBarry Smith   if (iascii || isdraw || issocket) {
13477b2a1423SBarry Smith     ierr = MatView_MPIBAIJ_ASCIIorDraworSocket(mat,viewer);CHKERRQ(ierr);
1348660746e0SBarry Smith   } else if (isbinary) {
1349660746e0SBarry Smith     ierr = MatView_MPIBAIJ_Binary(mat,viewer);CHKERRQ(ierr);
135057b952d6SSatish Balay   }
13513a40ed3dSBarry Smith   PetscFunctionReturn(0);
135257b952d6SSatish Balay }
135357b952d6SSatish Balay 
13544a2ae208SSatish Balay #undef __FUNCT__
13554a2ae208SSatish Balay #define __FUNCT__ "MatDestroy_MPIBAIJ"
1356dfbe8321SBarry Smith PetscErrorCode MatDestroy_MPIBAIJ(Mat mat)
135779bdfe76SSatish Balay {
135879bdfe76SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
1359dfbe8321SBarry Smith   PetscErrorCode ierr;
136079bdfe76SSatish Balay 
1361d64ed03dSBarry Smith   PetscFunctionBegin;
1362aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1363d0f46423SBarry Smith   PetscLogObjectState((PetscObject)mat,"Rows=%D,Cols=%D",mat->rmap->N,mat->cmap->N);
136479bdfe76SSatish Balay #endif
13658798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->stash);CHKERRQ(ierr);
13668798bf22SSatish Balay   ierr = MatStashDestroy_Private(&mat->bstash);CHKERRQ(ierr);
13676bf464f9SBarry Smith   ierr = MatDestroy(&baij->A);CHKERRQ(ierr);
13686bf464f9SBarry Smith   ierr = MatDestroy(&baij->B);CHKERRQ(ierr);
1369aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
13706bc0bbbfSBarry Smith   ierr = PetscTableDestroy(&baij->colmap);CHKERRQ(ierr);
137148e59246SSatish Balay #else
137205b42c5fSBarry Smith   ierr = PetscFree(baij->colmap);CHKERRQ(ierr);
137348e59246SSatish Balay #endif
137405b42c5fSBarry Smith   ierr = PetscFree(baij->garray);CHKERRQ(ierr);
13756bf464f9SBarry Smith   ierr = VecDestroy(&baij->lvec);CHKERRQ(ierr);
13766bf464f9SBarry Smith   ierr = VecScatterDestroy(&baij->Mvctx);CHKERRQ(ierr);
1377fca92195SBarry Smith   ierr = PetscFree2(baij->rowvalues,baij->rowindices);CHKERRQ(ierr);
137805b42c5fSBarry Smith   ierr = PetscFree(baij->barray);CHKERRQ(ierr);
1379fca92195SBarry Smith   ierr = PetscFree2(baij->hd,baij->ht);CHKERRQ(ierr);
1380899cda47SBarry Smith   ierr = PetscFree(baij->rangebs);CHKERRQ(ierr);
1381bf0cc555SLisandro Dalcin   ierr = PetscFree(mat->data);CHKERRQ(ierr);
1382901853e0SKris Buschelman 
1383dbd8c25aSHong Zhang   ierr = PetscObjectChangeTypeName((PetscObject)mat,0);CHKERRQ(ierr);
1384bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatStoreValues_C",NULL);CHKERRQ(ierr);
1385bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatRetrieveValues_C",NULL);CHKERRQ(ierr);
1386bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatGetDiagonalBlock_C",NULL);CHKERRQ(ierr);
1387bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocation_C",NULL);CHKERRQ(ierr);
1388bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatMPIBAIJSetPreallocationCSR_C",NULL);CHKERRQ(ierr);
1389bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatDiagonalScaleLocal_C",NULL);CHKERRQ(ierr);
1390bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatSetHashTableFactor_C",NULL);CHKERRQ(ierr);
1391bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpisbaij_C",NULL);CHKERRQ(ierr);
1392bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)mat,"MatConvert_mpibaij_mpibstrm_C",NULL);CHKERRQ(ierr);
13933a40ed3dSBarry Smith   PetscFunctionReturn(0);
139479bdfe76SSatish Balay }
139579bdfe76SSatish Balay 
13964a2ae208SSatish Balay #undef __FUNCT__
13974a2ae208SSatish Balay #define __FUNCT__ "MatMult_MPIBAIJ"
1398dfbe8321SBarry Smith PetscErrorCode MatMult_MPIBAIJ(Mat A,Vec xx,Vec yy)
1399cee3aa6bSSatish Balay {
1400cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1401dfbe8321SBarry Smith   PetscErrorCode ierr;
1402b24ad042SBarry Smith   PetscInt       nt;
1403cee3aa6bSSatish Balay 
1404d64ed03dSBarry Smith   PetscFunctionBegin;
1405e1311b90SBarry Smith   ierr = VecGetLocalSize(xx,&nt);CHKERRQ(ierr);
1406e7e72b3dSBarry Smith   if (nt != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible partition of A and xx");
1407e1311b90SBarry Smith   ierr = VecGetLocalSize(yy,&nt);CHKERRQ(ierr);
1408e7e72b3dSBarry Smith   if (nt != A->rmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Incompatible parition of A and yy");
1409ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1410f830108cSBarry Smith   ierr = (*a->A->ops->mult)(a->A,xx,yy);CHKERRQ(ierr);
1411ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1412f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,yy,yy);CHKERRQ(ierr);
14133a40ed3dSBarry Smith   PetscFunctionReturn(0);
1414cee3aa6bSSatish Balay }
1415cee3aa6bSSatish Balay 
14164a2ae208SSatish Balay #undef __FUNCT__
14174a2ae208SSatish Balay #define __FUNCT__ "MatMultAdd_MPIBAIJ"
1418dfbe8321SBarry Smith PetscErrorCode MatMultAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1419cee3aa6bSSatish Balay {
1420cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1421dfbe8321SBarry Smith   PetscErrorCode ierr;
1422d64ed03dSBarry Smith 
1423d64ed03dSBarry Smith   PetscFunctionBegin;
1424ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1425f830108cSBarry Smith   ierr = (*a->A->ops->multadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1426ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,xx,a->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
1427f830108cSBarry Smith   ierr = (*a->B->ops->multadd)(a->B,a->lvec,zz,zz);CHKERRQ(ierr);
14283a40ed3dSBarry Smith   PetscFunctionReturn(0);
1429cee3aa6bSSatish Balay }
1430cee3aa6bSSatish Balay 
14314a2ae208SSatish Balay #undef __FUNCT__
14324a2ae208SSatish Balay #define __FUNCT__ "MatMultTranspose_MPIBAIJ"
1433dfbe8321SBarry Smith PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A,Vec xx,Vec yy)
1434cee3aa6bSSatish Balay {
1435cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1436dfbe8321SBarry Smith   PetscErrorCode ierr;
1437ace3abfcSBarry Smith   PetscBool      merged;
1438cee3aa6bSSatish Balay 
1439d64ed03dSBarry Smith   PetscFunctionBegin;
1440a5ff213dSBarry Smith   ierr = VecScatterGetMerged(a->Mvctx,&merged);CHKERRQ(ierr);
1441cee3aa6bSSatish Balay   /* do nondiagonal part */
14427c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1443a5ff213dSBarry Smith   if (!merged) {
1444cee3aa6bSSatish Balay     /* send it on its way */
1445ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1446cee3aa6bSSatish Balay     /* do local part */
14477c922b88SBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1448cee3aa6bSSatish Balay     /* receive remote parts: note this assumes the values are not actually */
1449a5ff213dSBarry Smith     /* inserted in yy until the next line */
1450ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1451a5ff213dSBarry Smith   } else {
1452a5ff213dSBarry Smith     /* do local part */
1453a5ff213dSBarry Smith     ierr = (*a->A->ops->multtranspose)(a->A,xx,yy);CHKERRQ(ierr);
1454a5ff213dSBarry Smith     /* send it on its way */
1455ca9f406cSSatish Balay     ierr = VecScatterBegin(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1456a5ff213dSBarry Smith     /* values actually were received in the Begin() but we need to call this nop */
1457ca9f406cSSatish Balay     ierr = VecScatterEnd(a->Mvctx,a->lvec,yy,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1458a5ff213dSBarry Smith   }
14593a40ed3dSBarry Smith   PetscFunctionReturn(0);
1460cee3aa6bSSatish Balay }
1461cee3aa6bSSatish Balay 
14624a2ae208SSatish Balay #undef __FUNCT__
14634a2ae208SSatish Balay #define __FUNCT__ "MatMultTransposeAdd_MPIBAIJ"
1464dfbe8321SBarry Smith PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A,Vec xx,Vec yy,Vec zz)
1465cee3aa6bSSatish Balay {
1466cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1467dfbe8321SBarry Smith   PetscErrorCode ierr;
1468cee3aa6bSSatish Balay 
1469d64ed03dSBarry Smith   PetscFunctionBegin;
1470cee3aa6bSSatish Balay   /* do nondiagonal part */
14717c922b88SBarry Smith   ierr = (*a->B->ops->multtranspose)(a->B,xx,a->lvec);CHKERRQ(ierr);
1472cee3aa6bSSatish Balay   /* send it on its way */
1473ca9f406cSSatish Balay   ierr = VecScatterBegin(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
1474cee3aa6bSSatish Balay   /* do local part */
14757c922b88SBarry Smith   ierr = (*a->A->ops->multtransposeadd)(a->A,xx,yy,zz);CHKERRQ(ierr);
1476cee3aa6bSSatish Balay   /* receive remote parts: note this assumes the values are not actually */
1477cee3aa6bSSatish Balay   /* inserted in yy until the next line, which is true for my implementation*/
1478cee3aa6bSSatish Balay   /* but is not perhaps always true. */
1479ca9f406cSSatish Balay   ierr = VecScatterEnd(a->Mvctx,a->lvec,zz,ADD_VALUES,SCATTER_REVERSE);CHKERRQ(ierr);
14803a40ed3dSBarry Smith   PetscFunctionReturn(0);
1481cee3aa6bSSatish Balay }
1482cee3aa6bSSatish Balay 
1483cee3aa6bSSatish Balay /*
1484cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1485cee3aa6bSSatish Balay    diagonal block
1486cee3aa6bSSatish Balay */
14874a2ae208SSatish Balay #undef __FUNCT__
14884a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonal_MPIBAIJ"
1489dfbe8321SBarry Smith PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A,Vec v)
1490cee3aa6bSSatish Balay {
1491cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1492dfbe8321SBarry Smith   PetscErrorCode ierr;
1493d64ed03dSBarry Smith 
1494d64ed03dSBarry Smith   PetscFunctionBegin;
1495e32f2f54SBarry Smith   if (A->rmap->N != A->cmap->N) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Supports only square matrix where A->A is diag block");
14963a40ed3dSBarry Smith   ierr = MatGetDiagonal(a->A,v);CHKERRQ(ierr);
14973a40ed3dSBarry Smith   PetscFunctionReturn(0);
1498cee3aa6bSSatish Balay }
1499cee3aa6bSSatish Balay 
15004a2ae208SSatish Balay #undef __FUNCT__
15014a2ae208SSatish Balay #define __FUNCT__ "MatScale_MPIBAIJ"
1502f4df32b1SMatthew Knepley PetscErrorCode MatScale_MPIBAIJ(Mat A,PetscScalar aa)
1503cee3aa6bSSatish Balay {
1504cee3aa6bSSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1505dfbe8321SBarry Smith   PetscErrorCode ierr;
1506d64ed03dSBarry Smith 
1507d64ed03dSBarry Smith   PetscFunctionBegin;
1508f4df32b1SMatthew Knepley   ierr = MatScale(a->A,aa);CHKERRQ(ierr);
1509f4df32b1SMatthew Knepley   ierr = MatScale(a->B,aa);CHKERRQ(ierr);
15103a40ed3dSBarry Smith   PetscFunctionReturn(0);
1511cee3aa6bSSatish Balay }
1512026e39d0SSatish Balay 
15134a2ae208SSatish Balay #undef __FUNCT__
15144a2ae208SSatish Balay #define __FUNCT__ "MatGetRow_MPIBAIJ"
1515b24ad042SBarry Smith PetscErrorCode MatGetRow_MPIBAIJ(Mat matin,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1516acdf5bf4SSatish Balay {
1517acdf5bf4SSatish Balay   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
151887828ca2SBarry Smith   PetscScalar    *vworkA,*vworkB,**pvA,**pvB,*v_p;
15196849ba73SBarry Smith   PetscErrorCode ierr;
1520d0f46423SBarry Smith   PetscInt       bs = matin->rmap->bs,bs2 = mat->bs2,i,*cworkA,*cworkB,**pcA,**pcB;
1521d0f46423SBarry Smith   PetscInt       nztot,nzA,nzB,lrow,brstart = matin->rmap->rstart,brend = matin->rmap->rend;
1522899cda47SBarry Smith   PetscInt       *cmap,*idx_p,cstart = mat->cstartbs;
1523acdf5bf4SSatish Balay 
1524d64ed03dSBarry Smith   PetscFunctionBegin;
1525e7e72b3dSBarry Smith   if (row < brstart || row >= brend) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only local rows");
1526e32f2f54SBarry Smith   if (mat->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Already active");
1527acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1528acdf5bf4SSatish Balay 
1529acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1530acdf5bf4SSatish Balay     /*
1531acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1532acdf5bf4SSatish Balay     */
1533acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ*)mat->A->data,*Ba = (Mat_SeqBAIJ*)mat->B->data;
1534b24ad042SBarry Smith     PetscInt    max = 1,mbs = mat->mbs,tmp;
1535bd16c2feSSatish Balay     for (i=0; i<mbs; i++) {
1536acdf5bf4SSatish Balay       tmp = Aa->i[i+1] - Aa->i[i] + Ba->i[i+1] - Ba->i[i];
153726fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1538acdf5bf4SSatish Balay     }
1539dcca6d9dSJed Brown     ierr = PetscMalloc2(max*bs2,&mat->rowvalues,max*bs2,&mat->rowindices);CHKERRQ(ierr);
1540acdf5bf4SSatish Balay   }
1541d9d09a02SSatish Balay   lrow = row - brstart;
1542acdf5bf4SSatish Balay 
1543acdf5bf4SSatish Balay   pvA = &vworkA; pcA = &cworkA; pvB = &vworkB; pcB = &cworkB;
1544acdf5bf4SSatish Balay   if (!v)   {pvA = 0; pvB = 0;}
1545acdf5bf4SSatish Balay   if (!idx) {pcA = 0; if (!v) pcB = 0;}
1546f830108cSBarry Smith   ierr  = (*mat->A->ops->getrow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1547f830108cSBarry Smith   ierr  = (*mat->B->ops->getrow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
1548acdf5bf4SSatish Balay   nztot = nzA + nzB;
1549acdf5bf4SSatish Balay 
1550acdf5bf4SSatish Balay   cmap = mat->garray;
1551acdf5bf4SSatish Balay   if (v  || idx) {
1552acdf5bf4SSatish Balay     if (nztot) {
1553acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1554b24ad042SBarry Smith       PetscInt imark = -1;
1555acdf5bf4SSatish Balay       if (v) {
1556acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1557acdf5bf4SSatish Balay         for (i=0; i<nzB; i++) {
1558d9d09a02SSatish Balay           if (cmap[cworkB[i]/bs] < cstart) v_p[i] = vworkB[i];
1559acdf5bf4SSatish Balay           else break;
1560acdf5bf4SSatish Balay         }
1561acdf5bf4SSatish Balay         imark = i;
1562acdf5bf4SSatish Balay         for (i=0; i<nzA; i++)     v_p[imark+i] = vworkA[i];
1563acdf5bf4SSatish Balay         for (i=imark; i<nzB; i++) v_p[nzA+i]   = vworkB[i];
1564acdf5bf4SSatish Balay       }
1565acdf5bf4SSatish Balay       if (idx) {
1566acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1567acdf5bf4SSatish Balay         if (imark > -1) {
1568acdf5bf4SSatish Balay           for (i=0; i<imark; i++) {
1569bd16c2feSSatish Balay             idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1570acdf5bf4SSatish Balay           }
1571acdf5bf4SSatish Balay         } else {
1572acdf5bf4SSatish Balay           for (i=0; i<nzB; i++) {
157326fbe8dcSKarl Rupp             if (cmap[cworkB[i]/bs] < cstart) idx_p[i] = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs;
1574acdf5bf4SSatish Balay             else break;
1575acdf5bf4SSatish Balay           }
1576acdf5bf4SSatish Balay           imark = i;
1577acdf5bf4SSatish Balay         }
1578d9d09a02SSatish Balay         for (i=0; i<nzA; i++)     idx_p[imark+i] = cstart*bs + cworkA[i];
1579d9d09a02SSatish Balay         for (i=imark; i<nzB; i++) idx_p[nzA+i]   = cmap[cworkB[i]/bs]*bs + cworkB[i]%bs ;
1580acdf5bf4SSatish Balay       }
1581d64ed03dSBarry Smith     } else {
1582d212a18eSSatish Balay       if (idx) *idx = 0;
1583d212a18eSSatish Balay       if (v)   *v   = 0;
1584d212a18eSSatish Balay     }
1585acdf5bf4SSatish Balay   }
1586acdf5bf4SSatish Balay   *nz  = nztot;
1587f830108cSBarry Smith   ierr = (*mat->A->ops->restorerow)(mat->A,lrow,&nzA,pcA,pvA);CHKERRQ(ierr);
1588f830108cSBarry Smith   ierr = (*mat->B->ops->restorerow)(mat->B,lrow,&nzB,pcB,pvB);CHKERRQ(ierr);
15893a40ed3dSBarry Smith   PetscFunctionReturn(0);
1590acdf5bf4SSatish Balay }
1591acdf5bf4SSatish Balay 
15924a2ae208SSatish Balay #undef __FUNCT__
15934a2ae208SSatish Balay #define __FUNCT__ "MatRestoreRow_MPIBAIJ"
1594b24ad042SBarry Smith PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat,PetscInt row,PetscInt *nz,PetscInt **idx,PetscScalar **v)
1595acdf5bf4SSatish Balay {
1596acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data;
1597d64ed03dSBarry Smith 
1598d64ed03dSBarry Smith   PetscFunctionBegin;
1599e7e72b3dSBarry Smith   if (!baij->getrowactive) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"MatGetRow not called");
1600acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
16013a40ed3dSBarry Smith   PetscFunctionReturn(0);
1602acdf5bf4SSatish Balay }
1603acdf5bf4SSatish Balay 
16044a2ae208SSatish Balay #undef __FUNCT__
16054a2ae208SSatish Balay #define __FUNCT__ "MatZeroEntries_MPIBAIJ"
1606dfbe8321SBarry Smith PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A)
160758667388SSatish Balay {
160858667388SSatish Balay   Mat_MPIBAIJ    *l = (Mat_MPIBAIJ*)A->data;
1609dfbe8321SBarry Smith   PetscErrorCode ierr;
1610d64ed03dSBarry Smith 
1611d64ed03dSBarry Smith   PetscFunctionBegin;
161258667388SSatish Balay   ierr = MatZeroEntries(l->A);CHKERRQ(ierr);
161358667388SSatish Balay   ierr = MatZeroEntries(l->B);CHKERRQ(ierr);
16143a40ed3dSBarry Smith   PetscFunctionReturn(0);
161558667388SSatish Balay }
16160ac07820SSatish Balay 
16174a2ae208SSatish Balay #undef __FUNCT__
16184a2ae208SSatish Balay #define __FUNCT__ "MatGetInfo_MPIBAIJ"
1619dfbe8321SBarry Smith PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin,MatInfoType flag,MatInfo *info)
16200ac07820SSatish Balay {
16214e220ebcSLois Curfman McInnes   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)matin->data;
16224e220ebcSLois Curfman McInnes   Mat            A  = a->A,B = a->B;
1623dfbe8321SBarry Smith   PetscErrorCode ierr;
1624329f5518SBarry Smith   PetscReal      isend[5],irecv[5];
16250ac07820SSatish Balay 
1626d64ed03dSBarry Smith   PetscFunctionBegin;
1627d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
162826fbe8dcSKarl Rupp 
16294e220ebcSLois Curfman McInnes   ierr = MatGetInfo(A,MAT_LOCAL,info);CHKERRQ(ierr);
163026fbe8dcSKarl Rupp 
16310e4b21beSBarry Smith   isend[0] = info->nz_used; isend[1] = info->nz_allocated; isend[2] = info->nz_unneeded;
1632de87f314SBarry Smith   isend[3] = info->memory;  isend[4] = info->mallocs;
163326fbe8dcSKarl Rupp 
16344e220ebcSLois Curfman McInnes   ierr = MatGetInfo(B,MAT_LOCAL,info);CHKERRQ(ierr);
163526fbe8dcSKarl Rupp 
16360e4b21beSBarry Smith   isend[0] += info->nz_used; isend[1] += info->nz_allocated; isend[2] += info->nz_unneeded;
1637de87f314SBarry Smith   isend[3] += info->memory;  isend[4] += info->mallocs;
163826fbe8dcSKarl Rupp 
16390ac07820SSatish Balay   if (flag == MAT_LOCAL) {
16404e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
16414e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
16424e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
16434e220ebcSLois Curfman McInnes     info->memory       = isend[3];
16444e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
16450ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
1646b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
164726fbe8dcSKarl Rupp 
16484e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16494e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16504e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16514e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16524e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
16530ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
1654b2566f29SBarry Smith     ierr = MPIU_Allreduce(isend,irecv,5,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)matin));CHKERRQ(ierr);
165526fbe8dcSKarl Rupp 
16564e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
16574e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
16584e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
16594e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
16604e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
1661ce94432eSBarry Smith   } else SETERRQ1(PetscObjectComm((PetscObject)matin),PETSC_ERR_ARG_WRONG,"Unknown MatInfoType argument %d",(int)flag);
16624e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
16634e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
16644e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
16653a40ed3dSBarry Smith   PetscFunctionReturn(0);
16660ac07820SSatish Balay }
16670ac07820SSatish Balay 
16684a2ae208SSatish Balay #undef __FUNCT__
16694a2ae208SSatish Balay #define __FUNCT__ "MatSetOption_MPIBAIJ"
1670ace3abfcSBarry Smith PetscErrorCode MatSetOption_MPIBAIJ(Mat A,MatOption op,PetscBool flg)
167158667388SSatish Balay {
167258667388SSatish Balay   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
1673dfbe8321SBarry Smith   PetscErrorCode ierr;
167458667388SSatish Balay 
1675d64ed03dSBarry Smith   PetscFunctionBegin;
167612c028f9SKris Buschelman   switch (op) {
1677512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
167812c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
167928b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1680a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
168112c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
168243674050SBarry Smith     MatCheckPreallocated(A,1);
16834e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16844e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
168512c028f9SKris Buschelman     break;
168612c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
168743674050SBarry Smith     MatCheckPreallocated(A,1);
16884e0d8c25SBarry Smith     a->roworiented = flg;
168926fbe8dcSKarl Rupp 
16904e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
16914e0d8c25SBarry Smith     ierr = MatSetOption(a->B,op,flg);CHKERRQ(ierr);
169212c028f9SKris Buschelman     break;
16934e0d8c25SBarry Smith   case MAT_NEW_DIAGONALS:
1694290bbb0aSBarry Smith     ierr = PetscInfo1(A,"Option %s ignored\n",MatOptions[op]);CHKERRQ(ierr);
169512c028f9SKris Buschelman     break;
169612c028f9SKris Buschelman   case MAT_IGNORE_OFF_PROC_ENTRIES:
16974e0d8c25SBarry Smith     a->donotstash = flg;
169812c028f9SKris Buschelman     break;
169912c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
17004e0d8c25SBarry Smith     a->ht_flag = flg;
170112c028f9SKris Buschelman     break;
170277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
170377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
17042188ac68SBarry Smith   case MAT_HERMITIAN:
17052188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
170643674050SBarry Smith     MatCheckPreallocated(A,1);
17074e0d8c25SBarry Smith     ierr = MatSetOption(a->A,op,flg);CHKERRQ(ierr);
170877e54ba9SKris Buschelman     break;
170912c028f9SKris Buschelman   default:
1710ce94432eSBarry Smith     SETERRQ1(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"unknown option %d",op);
1711d64ed03dSBarry Smith   }
17123a40ed3dSBarry Smith   PetscFunctionReturn(0);
171358667388SSatish Balay }
171458667388SSatish Balay 
17154a2ae208SSatish Balay #undef __FUNCT__
17166a719282SBarry Smith #define __FUNCT__ "MatTranspose_MPIBAIJ"
1717fc4dec0aSBarry Smith PetscErrorCode MatTranspose_MPIBAIJ(Mat A,MatReuse reuse,Mat *matout)
17180ac07820SSatish Balay {
17190ac07820SSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)A->data;
17200ac07820SSatish Balay   Mat_SeqBAIJ    *Aloc;
17210ac07820SSatish Balay   Mat            B;
1722dfbe8321SBarry Smith   PetscErrorCode ierr;
1723d0f46423SBarry Smith   PetscInt       M =A->rmap->N,N=A->cmap->N,*ai,*aj,i,*rvals,j,k,col;
1724d0f46423SBarry Smith   PetscInt       bs=A->rmap->bs,mbs=baij->mbs;
17253eda8832SBarry Smith   MatScalar      *a;
17260ac07820SSatish Balay 
1727d64ed03dSBarry Smith   PetscFunctionBegin;
1728ce94432eSBarry Smith   if (reuse == MAT_REUSE_MATRIX && A == *matout && M != N) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_SIZ,"Square matrix only for in-place");
1729fc4dec0aSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || *matout == A) {
1730ce94432eSBarry Smith     ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
1731d0f46423SBarry Smith     ierr = MatSetSizes(B,A->cmap->n,A->rmap->n,N,M);CHKERRQ(ierr);
17327adad957SLisandro Dalcin     ierr = MatSetType(B,((PetscObject)A)->type_name);CHKERRQ(ierr);
17332e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
17340298fd71SBarry Smith     ierr = MatMPIBAIJSetPreallocation(B,A->rmap->bs,PETSC_DECIDE,NULL,PETSC_DECIDE,NULL);CHKERRQ(ierr);
1735fc4dec0aSBarry Smith   } else {
1736fc4dec0aSBarry Smith     B = *matout;
1737fc4dec0aSBarry Smith   }
17380ac07820SSatish Balay 
17390ac07820SSatish Balay   /* copy over the A part */
17400ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->A->data;
17410ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
1742785e854fSJed Brown   ierr = PetscMalloc1(bs,&rvals);CHKERRQ(ierr);
17430ac07820SSatish Balay 
17440ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1745899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
174626fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
17470ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
1748899cda47SBarry Smith       col = (baij->cstartbs+aj[j])*bs;
17490ac07820SSatish Balay       for (k=0; k<bs; k++) {
175097e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
175126fbe8dcSKarl Rupp 
17520ac07820SSatish Balay         col++; a += bs;
17530ac07820SSatish Balay       }
17540ac07820SSatish Balay     }
17550ac07820SSatish Balay   }
17560ac07820SSatish Balay   /* copy over the B part */
17570ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ*)baij->B->data;
17580ac07820SSatish Balay   ai   = Aloc->i; aj = Aloc->j; a = Aloc->a;
17590ac07820SSatish Balay   for (i=0; i<mbs; i++) {
1760899cda47SBarry Smith     rvals[0] = bs*(baij->rstartbs + i);
176126fbe8dcSKarl Rupp     for (j=1; j<bs; j++) rvals[j] = rvals[j-1] + 1;
17620ac07820SSatish Balay     for (j=ai[i]; j<ai[i+1]; j++) {
17630ac07820SSatish Balay       col = baij->garray[aj[j]]*bs;
17640ac07820SSatish Balay       for (k=0; k<bs; k++) {
176597e5c40aSBarry Smith         ierr = MatSetValues_MPIBAIJ(B,1,&col,bs,rvals,a,INSERT_VALUES);CHKERRQ(ierr);
176626fbe8dcSKarl Rupp         col++;
176726fbe8dcSKarl Rupp         a += bs;
17680ac07820SSatish Balay       }
17690ac07820SSatish Balay     }
17700ac07820SSatish Balay   }
1771606d414cSSatish Balay   ierr = PetscFree(rvals);CHKERRQ(ierr);
17720ac07820SSatish Balay   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17730ac07820SSatish Balay   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
17740ac07820SSatish Balay 
177526fbe8dcSKarl Rupp   if (reuse == MAT_INITIAL_MATRIX || *matout != A) *matout = B;
177626fbe8dcSKarl Rupp   else {
177728be2f97SBarry Smith     ierr = MatHeaderMerge(A,&B);CHKERRQ(ierr);
17780ac07820SSatish Balay   }
17793a40ed3dSBarry Smith   PetscFunctionReturn(0);
17800ac07820SSatish Balay }
17810e95ebc0SSatish Balay 
17824a2ae208SSatish Balay #undef __FUNCT__
17834a2ae208SSatish Balay #define __FUNCT__ "MatDiagonalScale_MPIBAIJ"
1784dfbe8321SBarry Smith PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat,Vec ll,Vec rr)
17850e95ebc0SSatish Balay {
178636c4a09eSSatish Balay   Mat_MPIBAIJ    *baij = (Mat_MPIBAIJ*)mat->data;
178736c4a09eSSatish Balay   Mat            a     = baij->A,b = baij->B;
1788dfbe8321SBarry Smith   PetscErrorCode ierr;
1789b24ad042SBarry Smith   PetscInt       s1,s2,s3;
17900e95ebc0SSatish Balay 
1791d64ed03dSBarry Smith   PetscFunctionBegin;
179236c4a09eSSatish Balay   ierr = MatGetLocalSize(mat,&s2,&s3);CHKERRQ(ierr);
179336c4a09eSSatish Balay   if (rr) {
179436c4a09eSSatish Balay     ierr = VecGetLocalSize(rr,&s1);CHKERRQ(ierr);
1795e32f2f54SBarry Smith     if (s1!=s3) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"right vector non-conforming local size");
179636c4a09eSSatish Balay     /* Overlap communication with computation. */
1797ca9f406cSSatish Balay     ierr = VecScatterBegin(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
179836c4a09eSSatish Balay   }
17990e95ebc0SSatish Balay   if (ll) {
18000e95ebc0SSatish Balay     ierr = VecGetLocalSize(ll,&s1);CHKERRQ(ierr);
1801e32f2f54SBarry Smith     if (s1!=s2) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"left vector non-conforming local size");
18020298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,ll,NULL);CHKERRQ(ierr);
18030e95ebc0SSatish Balay   }
180436c4a09eSSatish Balay   /* scale  the diagonal block */
180536c4a09eSSatish Balay   ierr = (*a->ops->diagonalscale)(a,ll,rr);CHKERRQ(ierr);
180636c4a09eSSatish Balay 
180736c4a09eSSatish Balay   if (rr) {
180836c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
1809ca9f406cSSatish Balay     ierr = VecScatterEnd(baij->Mvctx,rr,baij->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
18100298fd71SBarry Smith     ierr = (*b->ops->diagonalscale)(b,NULL,baij->lvec);CHKERRQ(ierr);
181136c4a09eSSatish Balay   }
18123a40ed3dSBarry Smith   PetscFunctionReturn(0);
18130e95ebc0SSatish Balay }
18140e95ebc0SSatish Balay 
18154a2ae208SSatish Balay #undef __FUNCT__
18164a2ae208SSatish Balay #define __FUNCT__ "MatZeroRows_MPIBAIJ"
18172b40b63fSBarry Smith PetscErrorCode MatZeroRows_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
18180ac07820SSatish Balay {
18190ac07820SSatish Balay   Mat_MPIBAIJ   *l      = (Mat_MPIBAIJ *) A->data;
182065a92638SMatthew G. Knepley   PetscInt      *owners = A->rmap->range;
182165a92638SMatthew G. Knepley   PetscInt       n      = A->rmap->n;
182265a92638SMatthew G. Knepley   PetscSF        sf;
182365a92638SMatthew G. Knepley   PetscInt      *lrows;
182465a92638SMatthew G. Knepley   PetscSFNode   *rrows;
182569ea2d38SJed Brown   PetscInt       r, p = 0, len = 0;
18266849ba73SBarry Smith   PetscErrorCode ierr;
18270ac07820SSatish Balay 
1828d64ed03dSBarry Smith   PetscFunctionBegin;
182965a92638SMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
1830785e854fSJed Brown   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
183165a92638SMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
1832a34163a4SJed Brown   if (!A->nooffproczerorows) {ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);}
183365a92638SMatthew G. Knepley   for (r = 0; r < N; ++r) {
183465a92638SMatthew G. Knepley     const PetscInt idx   = rows[r];
183569ea2d38SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
183669ea2d38SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
183769ea2d38SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
183869ea2d38SJed Brown     }
1839a34163a4SJed Brown     if (A->nooffproczerorows) {
1840a34163a4SJed Brown       if (p != l->rank) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"MAT_NO_OFF_PROC_ZERO_ROWS set, but row %D is not owned by rank %d",idx,l->rank);
1841a34163a4SJed Brown       lrows[len++] = idx - owners[p];
1842a34163a4SJed Brown     } else {
184365a92638SMatthew G. Knepley       rrows[r].rank = p;
184465a92638SMatthew G. Knepley       rrows[r].index = rows[r] - owners[p];
18450ac07820SSatish Balay     }
1846a34163a4SJed Brown   }
1847a34163a4SJed Brown   if (!A->nooffproczerorows) {
184865a92638SMatthew G. Knepley     ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
184965a92638SMatthew G. Knepley     ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
185065a92638SMatthew G. Knepley     /* Collect flags for rows to be zeroed */
185165a92638SMatthew G. Knepley     ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
185265a92638SMatthew G. Knepley     ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
185365a92638SMatthew G. Knepley     ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
185465a92638SMatthew G. Knepley     /* Compress and put in row numbers */
185565a92638SMatthew G. Knepley     for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
1856a34163a4SJed Brown   }
185797b48c8fSBarry Smith   /* fix right hand side if needed */
185897b48c8fSBarry Smith   if (x && b) {
185965a92638SMatthew G. Knepley     const PetscScalar *xx;
186065a92638SMatthew G. Knepley     PetscScalar       *bb;
186165a92638SMatthew G. Knepley 
186297b48c8fSBarry Smith     ierr = VecGetArrayRead(x,&xx);CHKERRQ(ierr);
186397b48c8fSBarry Smith     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
186465a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag*xx[lrows[r]];
186597b48c8fSBarry Smith     ierr = VecRestoreArrayRead(x,&xx);CHKERRQ(ierr);
186697b48c8fSBarry Smith     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
186797b48c8fSBarry Smith   }
186897b48c8fSBarry Smith 
18690ac07820SSatish Balay   /* actually zap the local rows */
187072dacd9aSBarry Smith   /*
187172dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1872a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
187372dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
187472dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
187572dacd9aSBarry Smith 
187672dacd9aSBarry Smith   */
18779c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
1878a34163a4SJed Brown   ierr = MatZeroRows_SeqBAIJ(l->B,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1879d0f46423SBarry Smith   if ((diag != 0.0) && (l->A->rmap->N == l->A->cmap->N)) {
1880a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,diag,NULL,NULL);CHKERRQ(ierr);
1881f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
188265a92638SMatthew G. Knepley     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,0,0);CHKERRQ(ierr);
1883e7e72b3dSBarry Smith     if (((Mat_SeqBAIJ*)l->A->data)->nonew) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1884512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
188565a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
188665a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
1887f4df32b1SMatthew Knepley       ierr = MatSetValues(A,1,&row,1,&row,&diag,INSERT_VALUES);CHKERRQ(ierr);
1888a07cd24cSSatish Balay     }
1889a07cd24cSSatish Balay     ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
1890a07cd24cSSatish Balay     ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
18919c957beeSSatish Balay   } else {
1892a34163a4SJed Brown     ierr = MatZeroRows_SeqBAIJ(l->A,len,lrows,0.0,NULL,NULL);CHKERRQ(ierr);
1893a07cd24cSSatish Balay   }
1894606d414cSSatish Balay   ierr = PetscFree(lrows);CHKERRQ(ierr);
18954f9cfa9eSBarry Smith 
18964f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
18974f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
1898e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1899b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
1900e56f5c9eSBarry Smith   }
19013a40ed3dSBarry Smith   PetscFunctionReturn(0);
19020ac07820SSatish Balay }
190372dacd9aSBarry Smith 
19044a2ae208SSatish Balay #undef __FUNCT__
19056f0a72daSMatthew G. Knepley #define __FUNCT__ "MatZeroRowsColumns_MPIBAIJ"
19066f0a72daSMatthew G. Knepley PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A,PetscInt N,const PetscInt rows[],PetscScalar diag,Vec x,Vec b)
19076f0a72daSMatthew G. Knepley {
19086f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ*)A->data;
19096f0a72daSMatthew G. Knepley   PetscErrorCode    ierr;
19105ba17502SJed Brown   PetscMPIInt       n = A->rmap->n;
1911fbb64d0eSMatthew G. Knepley   PetscInt          i,j,k,r,p = 0,len = 0,row,col,count;
19126f0a72daSMatthew G. Knepley   PetscInt          *lrows,*owners = A->rmap->range;
19136f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
19146f0a72daSMatthew G. Knepley   PetscSF           sf;
19156f0a72daSMatthew G. Knepley   const PetscScalar *xx;
19166f0a72daSMatthew G. Knepley   PetscScalar       *bb,*mask;
19176f0a72daSMatthew G. Knepley   Vec               xmask,lmask;
19186f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ*)l->B->data;
19196f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
19206f0a72daSMatthew G. Knepley   PetscScalar       *aa;
19216f0a72daSMatthew G. Knepley 
19226f0a72daSMatthew G. Knepley   PetscFunctionBegin;
19236f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
19246f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(n, &lrows);CHKERRQ(ierr);
19256f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
19266f0a72daSMatthew G. Knepley   ierr = PetscMalloc1(N, &rrows);CHKERRQ(ierr);
19276f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
19286f0a72daSMatthew G. Knepley     const PetscInt idx   = rows[r];
19295ba17502SJed Brown     if (idx < 0 || A->rmap->N <= idx) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row %D out of range [0,%D)",idx,A->rmap->N);
19305ba17502SJed Brown     if (idx < owners[p] || owners[p+1] <= idx) { /* short-circuit the search if the last p owns this row too */
19315ba17502SJed Brown       ierr = PetscLayoutFindOwner(A->rmap,idx,&p);CHKERRQ(ierr);
19325ba17502SJed Brown     }
19336f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
19346f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
19356f0a72daSMatthew G. Knepley   }
19366f0a72daSMatthew G. Knepley   ierr = PetscSFCreate(PetscObjectComm((PetscObject) A), &sf);CHKERRQ(ierr);
19376f0a72daSMatthew G. Knepley   ierr = PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER);CHKERRQ(ierr);
19386f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
19396f0a72daSMatthew G. Knepley   ierr = PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
19406f0a72daSMatthew G. Knepley   ierr = PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *) rows, lrows, MPI_LOR);CHKERRQ(ierr);
19416f0a72daSMatthew G. Knepley   ierr = PetscSFDestroy(&sf);CHKERRQ(ierr);
19426f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
19436f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) if (lrows[r] >= 0) lrows[len++] = r;
19446f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
19456f0a72daSMatthew G. Knepley   ierr = MatZeroRowsColumns(l->A,len,lrows,diag,x,b);CHKERRQ(ierr);
19466f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
19472a7a6963SBarry Smith   ierr = MatCreateVecs(A,&xmask,NULL);CHKERRQ(ierr);
19486f0a72daSMatthew G. Knepley   ierr = VecDuplicate(l->lvec,&lmask);CHKERRQ(ierr);
19496f0a72daSMatthew G. Knepley   ierr = VecGetArray(xmask,&bb);CHKERRQ(ierr);
19506f0a72daSMatthew G. Knepley   for (i=0; i<len; i++) bb[lrows[i]] = 1;
19516f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(xmask,&bb);CHKERRQ(ierr);
19526f0a72daSMatthew G. Knepley   ierr = VecScatterBegin(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
19536f0a72daSMatthew G. Knepley   ierr = VecScatterEnd(l->Mvctx,xmask,lmask,ADD_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
19546f0a72daSMatthew G. Knepley   ierr = VecDestroy(&xmask);CHKERRQ(ierr);
19556f0a72daSMatthew G. Knepley   if (x) {
19566f0a72daSMatthew G. Knepley     ierr = VecScatterBegin(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
19576f0a72daSMatthew G. Knepley     ierr = VecScatterEnd(l->Mvctx,x,l->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
19586f0a72daSMatthew G. Knepley     ierr = VecGetArrayRead(l->lvec,&xx);CHKERRQ(ierr);
19596f0a72daSMatthew G. Knepley     ierr = VecGetArray(b,&bb);CHKERRQ(ierr);
19606f0a72daSMatthew G. Knepley   }
19616f0a72daSMatthew G. Knepley   ierr = VecGetArray(lmask,&mask);CHKERRQ(ierr);
19626f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
19636f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
19646f0a72daSMatthew G. Knepley     row   = lrows[i];
19656f0a72daSMatthew G. Knepley     count = (baij->i[row/bs +1] - baij->i[row/bs])*bs;
19666f0a72daSMatthew G. Knepley     aa    = ((MatScalar*)(baij->a)) + baij->i[row/bs]*bs2 + (row%bs);
19676f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
19686f0a72daSMatthew G. Knepley       aa[0] = 0.0;
19696f0a72daSMatthew G. Knepley       aa   += bs;
19706f0a72daSMatthew G. Knepley     }
19716f0a72daSMatthew G. Knepley   }
19726f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
19736f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
19746f0a72daSMatthew G. Knepley     row = i/bs;
19756f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row+1]; ++j) {
19766f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
19776f0a72daSMatthew G. Knepley         col = bs*baij->j[j] + k;
19786f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
19796f0a72daSMatthew G. Knepley           aa = ((MatScalar*)(baij->a)) + j*bs2 + (i%bs) + bs*k;
19806f0a72daSMatthew G. Knepley           if (b) bb[i] -= aa[0]*xx[col];
19816f0a72daSMatthew G. Knepley           aa[0] = 0.0;
19826f0a72daSMatthew G. Knepley         }
19836f0a72daSMatthew G. Knepley       }
19846f0a72daSMatthew G. Knepley     }
19856f0a72daSMatthew G. Knepley   }
19866f0a72daSMatthew G. Knepley   if (x) {
19876f0a72daSMatthew G. Knepley     ierr = VecRestoreArray(b,&bb);CHKERRQ(ierr);
19886f0a72daSMatthew G. Knepley     ierr = VecRestoreArrayRead(l->lvec,&xx);CHKERRQ(ierr);
19896f0a72daSMatthew G. Knepley   }
19906f0a72daSMatthew G. Knepley   ierr = VecRestoreArray(lmask,&mask);CHKERRQ(ierr);
19916f0a72daSMatthew G. Knepley   ierr = VecDestroy(&lmask);CHKERRQ(ierr);
19926f0a72daSMatthew G. Knepley   ierr = PetscFree(lrows);CHKERRQ(ierr);
19934f9cfa9eSBarry Smith 
19944f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
19954f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ*)(l->A->data))->keepnonzeropattern) {
19964f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
1997b2566f29SBarry Smith     ierr = MPIU_Allreduce(&state,&A->nonzerostate,1,MPIU_INT64,MPI_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
19984f9cfa9eSBarry Smith   }
19996f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
20006f0a72daSMatthew G. Knepley }
20016f0a72daSMatthew G. Knepley 
20026f0a72daSMatthew G. Knepley #undef __FUNCT__
20034a2ae208SSatish Balay #define __FUNCT__ "MatSetUnfactored_MPIBAIJ"
2004dfbe8321SBarry Smith PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A)
2005bb5a7306SBarry Smith {
2006bb5a7306SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
2007dfbe8321SBarry Smith   PetscErrorCode ierr;
2008d64ed03dSBarry Smith 
2009d64ed03dSBarry Smith   PetscFunctionBegin;
2010bb5a7306SBarry Smith   ierr = MatSetUnfactored(a->A);CHKERRQ(ierr);
20113a40ed3dSBarry Smith   PetscFunctionReturn(0);
2012bb5a7306SBarry Smith }
2013bb5a7306SBarry Smith 
20146849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat,MatDuplicateOption,Mat*);
20150ac07820SSatish Balay 
20164a2ae208SSatish Balay #undef __FUNCT__
20174a2ae208SSatish Balay #define __FUNCT__ "MatEqual_MPIBAIJ"
2018ace3abfcSBarry Smith PetscErrorCode MatEqual_MPIBAIJ(Mat A,Mat B,PetscBool  *flag)
20197fc3c18eSBarry Smith {
20207fc3c18eSBarry Smith   Mat_MPIBAIJ    *matB = (Mat_MPIBAIJ*)B->data,*matA = (Mat_MPIBAIJ*)A->data;
20217fc3c18eSBarry Smith   Mat            a,b,c,d;
2022ace3abfcSBarry Smith   PetscBool      flg;
2023dfbe8321SBarry Smith   PetscErrorCode ierr;
20247fc3c18eSBarry Smith 
20257fc3c18eSBarry Smith   PetscFunctionBegin;
20267fc3c18eSBarry Smith   a = matA->A; b = matA->B;
20277fc3c18eSBarry Smith   c = matB->A; d = matB->B;
20287fc3c18eSBarry Smith 
20297fc3c18eSBarry Smith   ierr = MatEqual(a,c,&flg);CHKERRQ(ierr);
2030abc0a331SBarry Smith   if (flg) {
20317fc3c18eSBarry Smith     ierr = MatEqual(b,d,&flg);CHKERRQ(ierr);
20327fc3c18eSBarry Smith   }
2033b2566f29SBarry Smith   ierr = MPIU_Allreduce(&flg,flag,1,MPIU_BOOL,MPI_LAND,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
20347fc3c18eSBarry Smith   PetscFunctionReturn(0);
20357fc3c18eSBarry Smith }
20367fc3c18eSBarry Smith 
20373c896bc6SHong Zhang #undef __FUNCT__
20383c896bc6SHong Zhang #define __FUNCT__ "MatCopy_MPIBAIJ"
20393c896bc6SHong Zhang PetscErrorCode MatCopy_MPIBAIJ(Mat A,Mat B,MatStructure str)
20403c896bc6SHong Zhang {
20413c896bc6SHong Zhang   PetscErrorCode ierr;
20423c896bc6SHong Zhang   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
20433c896bc6SHong Zhang   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
20443c896bc6SHong Zhang 
20453c896bc6SHong Zhang   PetscFunctionBegin;
20463c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
20473c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
20483c896bc6SHong Zhang     ierr = MatCopy_Basic(A,B,str);CHKERRQ(ierr);
20493c896bc6SHong Zhang   } else {
20503c896bc6SHong Zhang     ierr = MatCopy(a->A,b->A,str);CHKERRQ(ierr);
20513c896bc6SHong Zhang     ierr = MatCopy(a->B,b->B,str);CHKERRQ(ierr);
20523c896bc6SHong Zhang   }
20533c896bc6SHong Zhang   PetscFunctionReturn(0);
20543c896bc6SHong Zhang }
2055273d9f13SBarry Smith 
20564a2ae208SSatish Balay #undef __FUNCT__
20574994cf47SJed Brown #define __FUNCT__ "MatSetUp_MPIBAIJ"
20584994cf47SJed Brown PetscErrorCode MatSetUp_MPIBAIJ(Mat A)
2059273d9f13SBarry Smith {
2060dfbe8321SBarry Smith   PetscErrorCode ierr;
2061273d9f13SBarry Smith 
2062273d9f13SBarry Smith   PetscFunctionBegin;
2063535b19f3SBarry Smith   ierr = MatMPIBAIJSetPreallocation(A,A->rmap->bs,PETSC_DEFAULT,0,PETSC_DEFAULT,0);CHKERRQ(ierr);
2064273d9f13SBarry Smith   PetscFunctionReturn(0);
2065273d9f13SBarry Smith }
2066273d9f13SBarry Smith 
20674fe895cdSHong Zhang #undef __FUNCT__
20684de5dceeSHong Zhang #define __FUNCT__ "MatAXPYGetPreallocation_MPIBAIJ"
20694de5dceeSHong Zhang PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y,const PetscInt *yltog,Mat X,const PetscInt *xltog,PetscInt *nnz)
20704de5dceeSHong Zhang {
2071001ddc4fSHong Zhang   PetscErrorCode ierr;
2072001ddc4fSHong Zhang   PetscInt       bs = Y->rmap->bs,m = Y->rmap->N/bs;
20734de5dceeSHong Zhang   Mat_SeqBAIJ    *x = (Mat_SeqBAIJ*)X->data;
20744de5dceeSHong Zhang   Mat_SeqBAIJ    *y = (Mat_SeqBAIJ*)Y->data;
20754de5dceeSHong Zhang 
20764de5dceeSHong Zhang   PetscFunctionBegin;
2077001ddc4fSHong Zhang   ierr = MatAXPYGetPreallocation_MPIX_private(m,x->i,x->j,xltog,y->i,y->j,yltog,nnz);CHKERRQ(ierr);
20784de5dceeSHong Zhang   PetscFunctionReturn(0);
20794de5dceeSHong Zhang }
20804de5dceeSHong Zhang 
20814de5dceeSHong Zhang #undef __FUNCT__
20824fe895cdSHong Zhang #define __FUNCT__ "MatAXPY_MPIBAIJ"
20834fe895cdSHong Zhang PetscErrorCode MatAXPY_MPIBAIJ(Mat Y,PetscScalar a,Mat X,MatStructure str)
20844fe895cdSHong Zhang {
20854fe895cdSHong Zhang   PetscErrorCode ierr;
20864fe895cdSHong Zhang   Mat_MPIBAIJ    *xx=(Mat_MPIBAIJ*)X->data,*yy=(Mat_MPIBAIJ*)Y->data;
20874fe895cdSHong Zhang   PetscBLASInt   bnz,one=1;
20884fe895cdSHong Zhang   Mat_SeqBAIJ    *x,*y;
20894fe895cdSHong Zhang 
20904fe895cdSHong Zhang   PetscFunctionBegin;
20914fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
20924fe895cdSHong Zhang     PetscScalar alpha = a;
20934fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->A->data;
20944fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->A->data;
2095c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
20968b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
20974fe895cdSHong Zhang     x    = (Mat_SeqBAIJ*)xx->B->data;
20984fe895cdSHong Zhang     y    = (Mat_SeqBAIJ*)yy->B->data;
2099c5df96a5SBarry Smith     ierr = PetscBLASIntCast(x->nz,&bnz);CHKERRQ(ierr);
21008b83055fSJed Brown     PetscStackCallBLAS("BLASaxpy",BLASaxpy_(&bnz,&alpha,x->a,&one,y->a,&one));
2101a3fa217bSJose E. Roman     ierr = PetscObjectStateIncrease((PetscObject)Y);CHKERRQ(ierr);
2102ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
2103ab784542SHong Zhang     ierr = MatAXPY_Basic(Y,a,X,str);CHKERRQ(ierr);
21044fe895cdSHong Zhang   } else {
21054de5dceeSHong Zhang     Mat      B;
21064de5dceeSHong Zhang     PetscInt *nnz_d,*nnz_o,bs=Y->rmap->bs;
21074de5dceeSHong Zhang     ierr = PetscMalloc1(yy->A->rmap->N,&nnz_d);CHKERRQ(ierr);
21084de5dceeSHong Zhang     ierr = PetscMalloc1(yy->B->rmap->N,&nnz_o);CHKERRQ(ierr);
21094de5dceeSHong Zhang     ierr = MatCreate(PetscObjectComm((PetscObject)Y),&B);CHKERRQ(ierr);
21104de5dceeSHong Zhang     ierr = PetscObjectSetName((PetscObject)B,((PetscObject)Y)->name);CHKERRQ(ierr);
21114de5dceeSHong Zhang     ierr = MatSetSizes(B,Y->rmap->n,Y->cmap->n,Y->rmap->N,Y->cmap->N);CHKERRQ(ierr);
21124de5dceeSHong Zhang     ierr = MatSetBlockSizesFromMats(B,Y,Y);CHKERRQ(ierr);
21134de5dceeSHong Zhang     ierr = MatSetType(B,MATMPIBAIJ);CHKERRQ(ierr);
21144de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_SeqBAIJ(yy->A,xx->A,nnz_d);CHKERRQ(ierr);
21154de5dceeSHong Zhang     ierr = MatAXPYGetPreallocation_MPIBAIJ(yy->B,yy->garray,xx->B,xx->garray,nnz_o);CHKERRQ(ierr);
21164de5dceeSHong Zhang     ierr = MatMPIBAIJSetPreallocation(B,bs,0,nnz_d,0,nnz_o);CHKERRQ(ierr);
21174de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
21184de5dceeSHong Zhang     ierr = MatAXPY_BasicWithPreallocation(B,Y,a,X,str);CHKERRQ(ierr);
211928be2f97SBarry Smith     ierr = MatHeaderReplace(Y,&B);CHKERRQ(ierr);
21204de5dceeSHong Zhang     ierr = PetscFree(nnz_d);CHKERRQ(ierr);
21214de5dceeSHong Zhang     ierr = PetscFree(nnz_o);CHKERRQ(ierr);
21224fe895cdSHong Zhang   }
21234fe895cdSHong Zhang   PetscFunctionReturn(0);
21244fe895cdSHong Zhang }
21254fe895cdSHong Zhang 
212699cafbc1SBarry Smith #undef __FUNCT__
212799cafbc1SBarry Smith #define __FUNCT__ "MatRealPart_MPIBAIJ"
212899cafbc1SBarry Smith PetscErrorCode MatRealPart_MPIBAIJ(Mat A)
212999cafbc1SBarry Smith {
213099cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
213199cafbc1SBarry Smith   PetscErrorCode ierr;
213299cafbc1SBarry Smith 
213399cafbc1SBarry Smith   PetscFunctionBegin;
213499cafbc1SBarry Smith   ierr = MatRealPart(a->A);CHKERRQ(ierr);
213599cafbc1SBarry Smith   ierr = MatRealPart(a->B);CHKERRQ(ierr);
213699cafbc1SBarry Smith   PetscFunctionReturn(0);
213799cafbc1SBarry Smith }
213899cafbc1SBarry Smith 
213999cafbc1SBarry Smith #undef __FUNCT__
214099cafbc1SBarry Smith #define __FUNCT__ "MatImaginaryPart_MPIBAIJ"
214199cafbc1SBarry Smith PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A)
214299cafbc1SBarry Smith {
214399cafbc1SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
214499cafbc1SBarry Smith   PetscErrorCode ierr;
214599cafbc1SBarry Smith 
214699cafbc1SBarry Smith   PetscFunctionBegin;
214799cafbc1SBarry Smith   ierr = MatImaginaryPart(a->A);CHKERRQ(ierr);
214899cafbc1SBarry Smith   ierr = MatImaginaryPart(a->B);CHKERRQ(ierr);
214999cafbc1SBarry Smith   PetscFunctionReturn(0);
215099cafbc1SBarry Smith }
215199cafbc1SBarry Smith 
215282094794SBarry Smith #undef __FUNCT__
215382094794SBarry Smith #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ"
21544aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ(Mat mat,IS isrow,IS iscol,MatReuse call,Mat *newmat)
21554aa3045dSJed Brown {
21564aa3045dSJed Brown   PetscErrorCode ierr;
21574aa3045dSJed Brown   IS             iscol_local;
21584aa3045dSJed Brown   PetscInt       csize;
21594aa3045dSJed Brown 
21604aa3045dSJed Brown   PetscFunctionBegin;
21614aa3045dSJed Brown   ierr = ISGetLocalSize(iscol,&csize);CHKERRQ(ierr);
2162b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
2163b79d0421SJed Brown     ierr = PetscObjectQuery((PetscObject)*newmat,"ISAllGather",(PetscObject*)&iscol_local);CHKERRQ(ierr);
2164e32f2f54SBarry Smith     if (!iscol_local) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
2165b79d0421SJed Brown   } else {
21664aa3045dSJed Brown     ierr = ISAllGather(iscol,&iscol_local);CHKERRQ(ierr);
2167b79d0421SJed Brown   }
21684aa3045dSJed Brown   ierr = MatGetSubMatrix_MPIBAIJ_Private(mat,isrow,iscol_local,csize,call,newmat);CHKERRQ(ierr);
2169b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
2170b79d0421SJed Brown     ierr = PetscObjectCompose((PetscObject)*newmat,"ISAllGather",(PetscObject)iscol_local);CHKERRQ(ierr);
21716bf464f9SBarry Smith     ierr = ISDestroy(&iscol_local);CHKERRQ(ierr);
2172b79d0421SJed Brown   }
21734aa3045dSJed Brown   PetscFunctionReturn(0);
21744aa3045dSJed Brown }
217529dcf524SDmitry Karpeev extern PetscErrorCode MatGetSubMatrices_MPIBAIJ_local(Mat,PetscInt,const IS[],const IS[],MatReuse,PetscBool*,PetscBool*,Mat*);
21764aa3045dSJed Brown #undef __FUNCT__
2177dd183c9eSJed Brown #define __FUNCT__ "MatGetSubMatrix_MPIBAIJ_Private"
217882094794SBarry Smith /*
217982094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
218082094794SBarry Smith   in local and then by concatenating the local matrices the end result.
21818f46ffcaSHong Zhang   Writing it directly would be much like MatGetSubMatrices_MPIBAIJ().
21828f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
218382094794SBarry Smith */
21844aa3045dSJed Brown PetscErrorCode MatGetSubMatrix_MPIBAIJ_Private(Mat mat,IS isrow,IS iscol,PetscInt csize,MatReuse call,Mat *newmat)
218582094794SBarry Smith {
218682094794SBarry Smith   PetscErrorCode ierr;
218782094794SBarry Smith   PetscMPIInt    rank,size;
218882094794SBarry Smith   PetscInt       i,m,n,rstart,row,rend,nz,*cwork,j,bs;
218929dcf524SDmitry Karpeev   PetscInt       *ii,*jj,nlocal,*dlens,*olens,dlen,olen,jend,mglobal,ncol,nrow;
219029dcf524SDmitry Karpeev   Mat            M,Mreuse;
219182094794SBarry Smith   MatScalar      *vwork,*aa;
2192ce94432eSBarry Smith   MPI_Comm       comm;
219329dcf524SDmitry Karpeev   IS             isrow_new, iscol_new;
219429dcf524SDmitry Karpeev   PetscBool      idflag,allrows, allcols;
219582094794SBarry Smith   Mat_SeqBAIJ    *aij;
219682094794SBarry Smith 
219782094794SBarry Smith   PetscFunctionBegin;
2198ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)mat,&comm);CHKERRQ(ierr);
219982094794SBarry Smith   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
220082094794SBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
220129dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
220229dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
220329dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->rmap->N,mat->rmap->n,mat->rmap->bs,1,&isrow,&isrow_new);CHKERRQ(ierr);
220429dcf524SDmitry Karpeev   ierr = ISCompressIndicesGeneral(mat->cmap->N,mat->cmap->n,mat->cmap->bs,1,&iscol,&iscol_new);CHKERRQ(ierr);
220582094794SBarry Smith 
220629dcf524SDmitry Karpeev   /* Check for special case: each processor gets entire matrix columns */
220729dcf524SDmitry Karpeev   ierr = ISIdentity(iscol,&idflag);CHKERRQ(ierr);
220829dcf524SDmitry Karpeev   ierr = ISGetLocalSize(iscol,&ncol);CHKERRQ(ierr);
220926fbe8dcSKarl Rupp   if (idflag && ncol == mat->cmap->N) allcols = PETSC_TRUE;
221026fbe8dcSKarl Rupp   else allcols = PETSC_FALSE;
221129dcf524SDmitry Karpeev 
221229dcf524SDmitry Karpeev   ierr = ISIdentity(isrow,&idflag);CHKERRQ(ierr);
221329dcf524SDmitry Karpeev   ierr = ISGetLocalSize(isrow,&nrow);CHKERRQ(ierr);
221426fbe8dcSKarl Rupp   if (idflag && nrow == mat->rmap->N) allrows = PETSC_TRUE;
221526fbe8dcSKarl Rupp   else allrows = PETSC_FALSE;
221626fbe8dcSKarl Rupp 
221782094794SBarry Smith   if (call ==  MAT_REUSE_MATRIX) {
221882094794SBarry Smith     ierr = PetscObjectQuery((PetscObject)*newmat,"SubMatrix",(PetscObject*)&Mreuse);CHKERRQ(ierr);
2219e32f2f54SBarry Smith     if (!Mreuse) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Submatrix passed in was not used before, cannot reuse");
222075f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_REUSE_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
222182094794SBarry Smith   } else {
222275f6568bSJed Brown     ierr = MatGetSubMatrices_MPIBAIJ_local(mat,1,&isrow_new,&iscol_new,MAT_INITIAL_MATRIX,&allrows,&allcols,&Mreuse);CHKERRQ(ierr);
222382094794SBarry Smith   }
222429dcf524SDmitry Karpeev   ierr = ISDestroy(&isrow_new);CHKERRQ(ierr);
222529dcf524SDmitry Karpeev   ierr = ISDestroy(&iscol_new);CHKERRQ(ierr);
222682094794SBarry Smith   /*
222782094794SBarry Smith       m - number of local rows
222882094794SBarry Smith       n - number of columns (same on all processors)
222982094794SBarry Smith       rstart - first row in new global matrix generated
223082094794SBarry Smith   */
223182094794SBarry Smith   ierr = MatGetBlockSize(mat,&bs);CHKERRQ(ierr);
223282094794SBarry Smith   ierr = MatGetSize(Mreuse,&m,&n);CHKERRQ(ierr);
223382094794SBarry Smith   m    = m/bs;
223482094794SBarry Smith   n    = n/bs;
223582094794SBarry Smith 
223682094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
223782094794SBarry Smith     aij = (Mat_SeqBAIJ*)(Mreuse)->data;
223882094794SBarry Smith     ii  = aij->i;
223982094794SBarry Smith     jj  = aij->j;
224082094794SBarry Smith 
224182094794SBarry Smith     /*
224282094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
224382094794SBarry Smith         portions of the matrix in order to do correct preallocation
224482094794SBarry Smith     */
224582094794SBarry Smith 
224682094794SBarry Smith     /* first get start and end of "diagonal" columns */
224782094794SBarry Smith     if (csize == PETSC_DECIDE) {
224882094794SBarry Smith       ierr = ISGetSize(isrow,&mglobal);CHKERRQ(ierr);
224982094794SBarry Smith       if (mglobal == n*bs) { /* square matrix */
225082094794SBarry Smith         nlocal = m;
225182094794SBarry Smith       } else {
225282094794SBarry Smith         nlocal = n/size + ((n % size) > rank);
225382094794SBarry Smith       }
225482094794SBarry Smith     } else {
225582094794SBarry Smith       nlocal = csize/bs;
225682094794SBarry Smith     }
225782094794SBarry Smith     ierr   = MPI_Scan(&nlocal,&rend,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
225882094794SBarry Smith     rstart = rend - nlocal;
225965e19b50SBarry Smith     if (rank == size - 1 && rend != n) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Local column sizes %D do not add up to total number of columns %D",rend,n);
226082094794SBarry Smith 
226182094794SBarry Smith     /* next, compute all the lengths */
2262dcca6d9dSJed Brown     ierr  = PetscMalloc2(m+1,&dlens,m+1,&olens);CHKERRQ(ierr);
226382094794SBarry Smith     for (i=0; i<m; i++) {
226482094794SBarry Smith       jend = ii[i+1] - ii[i];
226582094794SBarry Smith       olen = 0;
226682094794SBarry Smith       dlen = 0;
226782094794SBarry Smith       for (j=0; j<jend; j++) {
226882094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
226982094794SBarry Smith         else dlen++;
227082094794SBarry Smith         jj++;
227182094794SBarry Smith       }
227282094794SBarry Smith       olens[i] = olen;
227382094794SBarry Smith       dlens[i] = dlen;
227482094794SBarry Smith     }
227582094794SBarry Smith     ierr = MatCreate(comm,&M);CHKERRQ(ierr);
227682094794SBarry Smith     ierr = MatSetSizes(M,bs*m,bs*nlocal,PETSC_DECIDE,bs*n);CHKERRQ(ierr);
227782094794SBarry Smith     ierr = MatSetType(M,((PetscObject)mat)->type_name);CHKERRQ(ierr);
227882094794SBarry Smith     ierr = MatMPIBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
22798f46ffcaSHong Zhang     ierr = MatMPISBAIJSetPreallocation(M,bs,0,dlens,0,olens);CHKERRQ(ierr);
2280eb9baa12SBarry Smith     ierr = PetscFree2(dlens,olens);CHKERRQ(ierr);
228182094794SBarry Smith   } else {
228282094794SBarry Smith     PetscInt ml,nl;
228382094794SBarry Smith 
228482094794SBarry Smith     M    = *newmat;
228582094794SBarry Smith     ierr = MatGetLocalSize(M,&ml,&nl);CHKERRQ(ierr);
2286e32f2f54SBarry Smith     if (ml != m) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_SIZ,"Previous matrix must be same size/layout as request");
228782094794SBarry Smith     ierr = MatZeroEntries(M);CHKERRQ(ierr);
228882094794SBarry Smith     /*
228982094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
229082094794SBarry Smith        rather than the slower MatSetValues().
229182094794SBarry Smith     */
229282094794SBarry Smith     M->was_assembled = PETSC_TRUE;
229382094794SBarry Smith     M->assembled     = PETSC_FALSE;
229482094794SBarry Smith   }
229582094794SBarry Smith   ierr = MatSetOption(M,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
229682094794SBarry Smith   ierr = MatGetOwnershipRange(M,&rstart,&rend);CHKERRQ(ierr);
229782094794SBarry Smith   aij  = (Mat_SeqBAIJ*)(Mreuse)->data;
229882094794SBarry Smith   ii   = aij->i;
229982094794SBarry Smith   jj   = aij->j;
230082094794SBarry Smith   aa   = aij->a;
230182094794SBarry Smith   for (i=0; i<m; i++) {
230282094794SBarry Smith     row   = rstart/bs + i;
230382094794SBarry Smith     nz    = ii[i+1] - ii[i];
230482094794SBarry Smith     cwork = jj;     jj += nz;
230575f6568bSJed Brown     vwork = aa;     aa += nz*bs*bs;
230682094794SBarry Smith     ierr  = MatSetValuesBlocked_MPIBAIJ(M,1,&row,nz,cwork,vwork,INSERT_VALUES);CHKERRQ(ierr);
230782094794SBarry Smith   }
230882094794SBarry Smith 
230982094794SBarry Smith   ierr    = MatAssemblyBegin(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
231082094794SBarry Smith   ierr    = MatAssemblyEnd(M,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
231182094794SBarry Smith   *newmat = M;
231282094794SBarry Smith 
231382094794SBarry Smith   /* save submatrix used in processor for next request */
231482094794SBarry Smith   if (call ==  MAT_INITIAL_MATRIX) {
231582094794SBarry Smith     ierr = PetscObjectCompose((PetscObject)M,"SubMatrix",(PetscObject)Mreuse);CHKERRQ(ierr);
231682094794SBarry Smith     ierr = PetscObjectDereference((PetscObject)Mreuse);CHKERRQ(ierr);
231782094794SBarry Smith   }
231882094794SBarry Smith   PetscFunctionReturn(0);
231982094794SBarry Smith }
232082094794SBarry Smith 
232182094794SBarry Smith #undef __FUNCT__
232282094794SBarry Smith #define __FUNCT__ "MatPermute_MPIBAIJ"
232382094794SBarry Smith PetscErrorCode MatPermute_MPIBAIJ(Mat A,IS rowp,IS colp,Mat *B)
232482094794SBarry Smith {
232582094794SBarry Smith   MPI_Comm       comm,pcomm;
2326a0a83eb5SRémi Lacroix   PetscInt       clocal_size,nrows;
232782094794SBarry Smith   const PetscInt *rows;
2328dbf0e21dSBarry Smith   PetscMPIInt    size;
2329a0a83eb5SRémi Lacroix   IS             crowp,lcolp;
233082094794SBarry Smith   PetscErrorCode ierr;
233182094794SBarry Smith 
233282094794SBarry Smith   PetscFunctionBegin;
233382094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)A,&comm);CHKERRQ(ierr);
233482094794SBarry Smith   /* make a collective version of 'rowp' */
233582094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)rowp,&pcomm);CHKERRQ(ierr);
233682094794SBarry Smith   if (pcomm==comm) {
233782094794SBarry Smith     crowp = rowp;
233882094794SBarry Smith   } else {
233982094794SBarry Smith     ierr = ISGetSize(rowp,&nrows);CHKERRQ(ierr);
234082094794SBarry Smith     ierr = ISGetIndices(rowp,&rows);CHKERRQ(ierr);
234170b3c8c7SBarry Smith     ierr = ISCreateGeneral(comm,nrows,rows,PETSC_COPY_VALUES,&crowp);CHKERRQ(ierr);
234282094794SBarry Smith     ierr = ISRestoreIndices(rowp,&rows);CHKERRQ(ierr);
234382094794SBarry Smith   }
2344a0a83eb5SRémi Lacroix   ierr = ISSetPermutation(crowp);CHKERRQ(ierr);
2345a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
234682094794SBarry Smith   ierr = PetscObjectGetComm((PetscObject)colp,&pcomm);CHKERRQ(ierr);
2347dbf0e21dSBarry Smith   ierr = MPI_Comm_size(pcomm,&size);CHKERRQ(ierr);
2348dbf0e21dSBarry Smith   if (size==1) {
234982094794SBarry Smith     lcolp = colp;
235082094794SBarry Smith   } else {
235175f6568bSJed Brown     ierr = ISAllGather(colp,&lcolp);CHKERRQ(ierr);
235282094794SBarry Smith   }
2353dbf0e21dSBarry Smith   ierr = ISSetPermutation(lcolp);CHKERRQ(ierr);
235475f6568bSJed Brown   /* now we just get the submatrix */
23557afc1a8bSJed Brown   ierr = MatGetLocalSize(A,NULL,&clocal_size);CHKERRQ(ierr);
2356a0a83eb5SRémi Lacroix   ierr = MatGetSubMatrix_MPIBAIJ_Private(A,crowp,lcolp,clocal_size,MAT_INITIAL_MATRIX,B);CHKERRQ(ierr);
2357a0a83eb5SRémi Lacroix   /* clean up */
2358a0a83eb5SRémi Lacroix   if (pcomm!=comm) {
2359a0a83eb5SRémi Lacroix     ierr = ISDestroy(&crowp);CHKERRQ(ierr);
2360a0a83eb5SRémi Lacroix   }
2361dbf0e21dSBarry Smith   if (size>1) {
23626bf464f9SBarry Smith     ierr = ISDestroy(&lcolp);CHKERRQ(ierr);
236382094794SBarry Smith   }
236482094794SBarry Smith   PetscFunctionReturn(0);
236582094794SBarry Smith }
236682094794SBarry Smith 
23678c7482ecSBarry Smith #undef __FUNCT__
23688c7482ecSBarry Smith #define __FUNCT__ "MatGetGhosts_MPIBAIJ"
23697087cfbeSBarry Smith PetscErrorCode  MatGetGhosts_MPIBAIJ(Mat mat,PetscInt *nghosts,const PetscInt *ghosts[])
23708c7482ecSBarry Smith {
23718c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*) mat->data;
23728c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ*)baij->B->data;
23738c7482ecSBarry Smith 
23748c7482ecSBarry Smith   PetscFunctionBegin;
237526fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
237626fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
23778c7482ecSBarry Smith   PetscFunctionReturn(0);
23788c7482ecSBarry Smith }
23798c7482ecSBarry Smith 
2380f6d58c54SBarry Smith #undef __FUNCT__
2381d1adec66SJed Brown #define __FUNCT__ "MatGetSeqNonzeroStructure_MPIBAIJ"
2382d1adec66SJed Brown PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A,Mat *newmat)
2383f6d58c54SBarry Smith {
2384f6d58c54SBarry Smith   Mat            B;
2385f6d58c54SBarry Smith   Mat_MPIBAIJ    *a  = (Mat_MPIBAIJ*)A->data;
2386f6d58c54SBarry Smith   Mat_SeqBAIJ    *ad = (Mat_SeqBAIJ*)a->A->data,*bd = (Mat_SeqBAIJ*)a->B->data;
2387f6d58c54SBarry Smith   Mat_SeqAIJ     *b;
2388f6d58c54SBarry Smith   PetscErrorCode ierr;
2389f6d58c54SBarry Smith   PetscMPIInt    size,rank,*recvcounts = 0,*displs = 0;
2390f6d58c54SBarry Smith   PetscInt       sendcount,i,*rstarts = A->rmap->range,n,cnt,j,bs = A->rmap->bs;
2391f6d58c54SBarry Smith   PetscInt       m,*garray = a->garray,*lens,*jsendbuf,*a_jsendbuf,*b_jsendbuf;
2392f6d58c54SBarry Smith 
2393f6d58c54SBarry Smith   PetscFunctionBegin;
2394ce94432eSBarry Smith   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)A),&size);CHKERRQ(ierr);
2395ce94432eSBarry Smith   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)A),&rank);CHKERRQ(ierr);
2396f6d58c54SBarry Smith 
2397f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2398f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2399f6d58c54SBarry Smith   */
2400854ce69bSBarry Smith   ierr = PetscMalloc1(A->rmap->N/bs,&lens);CHKERRQ(ierr);
2401f6d58c54SBarry Smith   for (i=A->rmap->rstart/bs; i<A->rmap->rend/bs; i++) {
2402f6d58c54SBarry Smith     lens[i] = ad->i[i-A->rmap->rstart/bs+1] - ad->i[i-A->rmap->rstart/bs] + bd->i[i-A->rmap->rstart/bs+1] - bd->i[i-A->rmap->rstart/bs];
2403f6d58c54SBarry Smith   }
2404f6d58c54SBarry Smith   sendcount = A->rmap->rend/bs - A->rmap->rstart/bs;
2405785e854fSJed Brown   ierr      = PetscMalloc1(2*size,&recvcounts);CHKERRQ(ierr);
2406f6d58c54SBarry Smith   displs    = recvcounts + size;
2407f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2408f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i+1]/bs - A->rmap->range[i]/bs;
2409f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i]/bs;
2410f6d58c54SBarry Smith   }
2411f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2412ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2413f6d58c54SBarry Smith #else
2414ce94432eSBarry Smith   ierr = MPI_Allgatherv(lens+A->rmap->rstart/bs,sendcount,MPIU_INT,lens,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2415f6d58c54SBarry Smith #endif
2416f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2417f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2418f6d58c54SBarry Smith   */
2419f6d58c54SBarry Smith   ierr = MatCreate(PETSC_COMM_SELF,&B);CHKERRQ(ierr);
2420f6d58c54SBarry Smith   ierr = MatSetSizes(B,A->rmap->N/bs,A->cmap->N/bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
2421f6d58c54SBarry Smith   ierr = MatSetType(B,MATSEQAIJ);CHKERRQ(ierr);
2422f6d58c54SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,lens);CHKERRQ(ierr);
2423f6d58c54SBarry Smith   b    = (Mat_SeqAIJ*)B->data;
2424f6d58c54SBarry Smith 
2425f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2426f6d58c54SBarry Smith     Copy my part of matrix column indices over
2427f6d58c54SBarry Smith   */
2428f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2429f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank]/bs];
2430f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2431f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2432f6d58c54SBarry Smith   n          = A->rmap->rend/bs - A->rmap->rstart/bs;
2433f6d58c54SBarry Smith   cnt        = 0;
2434f6d58c54SBarry Smith   for (i=0; i<n; i++) {
2435f6d58c54SBarry Smith 
2436f6d58c54SBarry Smith     /* put in lower diagonal portion */
2437f6d58c54SBarry Smith     m = bd->i[i+1] - bd->i[i];
2438f6d58c54SBarry Smith     while (m > 0) {
2439f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2440f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart/bs + i) break;
2441f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2442f6d58c54SBarry Smith       m--;
2443f6d58c54SBarry Smith     }
2444f6d58c54SBarry Smith 
2445f6d58c54SBarry Smith     /* put in diagonal portion */
2446f6d58c54SBarry Smith     for (j=ad->i[i]; j<ad->i[i+1]; j++) {
2447f6d58c54SBarry Smith       jsendbuf[cnt++] = A->rmap->rstart/bs + *a_jsendbuf++;
2448f6d58c54SBarry Smith     }
2449f6d58c54SBarry Smith 
2450f6d58c54SBarry Smith     /* put in upper diagonal portion */
2451f6d58c54SBarry Smith     while (m-- > 0) {
2452f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2453f6d58c54SBarry Smith     }
2454f6d58c54SBarry Smith   }
2455e32f2f54SBarry Smith   if (cnt != sendcount) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Corrupted PETSc matrix: nz given %D actual nz %D",sendcount,cnt);
2456f6d58c54SBarry Smith 
2457f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2458f6d58c54SBarry Smith     Gather all column indices to all processors
2459f6d58c54SBarry Smith   */
2460f6d58c54SBarry Smith   for (i=0; i<size; i++) {
2461f6d58c54SBarry Smith     recvcounts[i] = 0;
2462f6d58c54SBarry Smith     for (j=A->rmap->range[i]/bs; j<A->rmap->range[i+1]/bs; j++) {
2463f6d58c54SBarry Smith       recvcounts[i] += lens[j];
2464f6d58c54SBarry Smith     }
2465f6d58c54SBarry Smith   }
2466f6d58c54SBarry Smith   displs[0] = 0;
2467f6d58c54SBarry Smith   for (i=1; i<size; i++) {
2468f6d58c54SBarry Smith     displs[i] = displs[i-1] + recvcounts[i-1];
2469f6d58c54SBarry Smith   }
2470f6d58c54SBarry Smith #if defined(PETSC_HAVE_MPI_IN_PLACE)
2471ce94432eSBarry Smith   ierr = MPI_Allgatherv(MPI_IN_PLACE,0,MPI_DATATYPE_NULL,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2472f6d58c54SBarry Smith #else
2473ce94432eSBarry Smith   ierr = MPI_Allgatherv(jsendbuf,sendcount,MPIU_INT,b->j,recvcounts,displs,MPIU_INT,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
2474f6d58c54SBarry Smith #endif
2475f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2476f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2477f6d58c54SBarry Smith   */
2478f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
2479f6d58c54SBarry Smith   ierr = PetscMemcpy(b->ilen,lens,(A->rmap->N/bs)*sizeof(PetscInt));CHKERRQ(ierr);
2480f6d58c54SBarry Smith   /* set the b->i indices */
2481f6d58c54SBarry Smith   b->i[0] = 0;
2482f6d58c54SBarry Smith   for (i=1; i<=A->rmap->N/bs; i++) {
2483f6d58c54SBarry Smith     b->i[i] = b->i[i-1] + lens[i-1];
2484f6d58c54SBarry Smith   }
2485f6d58c54SBarry Smith   ierr = PetscFree(lens);CHKERRQ(ierr);
2486f6d58c54SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2487f6d58c54SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2488f6d58c54SBarry Smith   ierr = PetscFree(recvcounts);CHKERRQ(ierr);
2489f6d58c54SBarry Smith 
2490f6d58c54SBarry Smith   if (A->symmetric) {
2491f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2492f6d58c54SBarry Smith   } else if (A->hermitian) {
2493f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_HERMITIAN,PETSC_TRUE);CHKERRQ(ierr);
2494f6d58c54SBarry Smith   } else if (A->structurally_symmetric) {
2495f6d58c54SBarry Smith     ierr = MatSetOption(B,MAT_STRUCTURALLY_SYMMETRIC,PETSC_TRUE);CHKERRQ(ierr);
2496f6d58c54SBarry Smith   }
2497f6d58c54SBarry Smith   *newmat = B;
2498f6d58c54SBarry Smith   PetscFunctionReturn(0);
2499f6d58c54SBarry Smith }
2500f6d58c54SBarry Smith 
2501b1a666ecSBarry Smith #undef __FUNCT__
2502b1a666ecSBarry Smith #define __FUNCT__ "MatSOR_MPIBAIJ"
2503b1a666ecSBarry Smith PetscErrorCode MatSOR_MPIBAIJ(Mat matin,Vec bb,PetscReal omega,MatSORType flag,PetscReal fshift,PetscInt its,PetscInt lits,Vec xx)
2504b1a666ecSBarry Smith {
2505b1a666ecSBarry Smith   Mat_MPIBAIJ    *mat = (Mat_MPIBAIJ*)matin->data;
2506b1a666ecSBarry Smith   PetscErrorCode ierr;
2507b1a666ecSBarry Smith   Vec            bb1 = 0;
2508b1a666ecSBarry Smith 
2509b1a666ecSBarry Smith   PetscFunctionBegin;
2510b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
2511b1a666ecSBarry Smith     ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2512b1a666ecSBarry Smith     PetscFunctionReturn(0);
2513b1a666ecSBarry Smith   }
2514b1a666ecSBarry Smith 
25154e980039SJed Brown   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) {
25164e980039SJed Brown     ierr = VecDuplicate(bb,&bb1);CHKERRQ(ierr);
25174e980039SJed Brown   }
25184e980039SJed Brown 
2519b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2520b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2521b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2522b1a666ecSBarry Smith       its--;
2523b1a666ecSBarry Smith     }
2524b1a666ecSBarry Smith 
2525b1a666ecSBarry Smith     while (its--) {
2526b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2527b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2528b1a666ecSBarry Smith 
2529b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2530b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2531b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2532b1a666ecSBarry Smith 
2533b1a666ecSBarry Smith       /* local sweep */
2534b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_SYMMETRIC_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2535b1a666ecSBarry Smith     }
2536b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2537b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2538b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2539b1a666ecSBarry Smith       its--;
2540b1a666ecSBarry Smith     }
2541b1a666ecSBarry Smith     while (its--) {
2542b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2543b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2544b1a666ecSBarry Smith 
2545b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2546b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2547b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2548b1a666ecSBarry Smith 
2549b1a666ecSBarry Smith       /* local sweep */
2550b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_FORWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2551b1a666ecSBarry Smith     }
2552b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2553b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
2554b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb,omega,flag,fshift,lits,1,xx);CHKERRQ(ierr);
2555b1a666ecSBarry Smith       its--;
2556b1a666ecSBarry Smith     }
2557b1a666ecSBarry Smith     while (its--) {
2558b1a666ecSBarry Smith       ierr = VecScatterBegin(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2559b1a666ecSBarry Smith       ierr = VecScatterEnd(mat->Mvctx,xx,mat->lvec,INSERT_VALUES,SCATTER_FORWARD);CHKERRQ(ierr);
2560b1a666ecSBarry Smith 
2561b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
2562b1a666ecSBarry Smith       ierr = VecScale(mat->lvec,-1.0);CHKERRQ(ierr);
2563b1a666ecSBarry Smith       ierr = (*mat->B->ops->multadd)(mat->B,mat->lvec,bb,bb1);CHKERRQ(ierr);
2564b1a666ecSBarry Smith 
2565b1a666ecSBarry Smith       /* local sweep */
2566b1a666ecSBarry Smith       ierr = (*mat->A->ops->sor)(mat->A,bb1,omega,SOR_BACKWARD_SWEEP,fshift,lits,1,xx);CHKERRQ(ierr);
2567b1a666ecSBarry Smith     }
2568ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin),PETSC_ERR_SUP,"Parallel version of SOR requested not supported");
2569b1a666ecSBarry Smith 
25706bf464f9SBarry Smith   ierr = VecDestroy(&bb1);CHKERRQ(ierr);
2571b1a666ecSBarry Smith   PetscFunctionReturn(0);
2572b1a666ecSBarry Smith }
2573b1a666ecSBarry Smith 
2574bbead8a2SBarry Smith #undef __FUNCT__
257547f7623dSRémi Lacroix #define __FUNCT__ "MatGetColumnNorms_MPIBAIJ"
257647f7623dSRémi Lacroix PetscErrorCode MatGetColumnNorms_MPIBAIJ(Mat A,NormType type,PetscReal *norms)
257747f7623dSRémi Lacroix {
257847f7623dSRémi Lacroix   PetscErrorCode ierr;
257947f7623dSRémi Lacroix   Mat_MPIBAIJ    *aij = (Mat_MPIBAIJ*)A->data;
258047f7623dSRémi Lacroix   PetscInt       N,i,*garray = aij->garray;
258147f7623dSRémi Lacroix   PetscInt       ib,jb,bs = A->rmap->bs;
258247f7623dSRémi Lacroix   Mat_SeqBAIJ    *a_aij = (Mat_SeqBAIJ*) aij->A->data;
258347f7623dSRémi Lacroix   MatScalar      *a_val = a_aij->a;
258447f7623dSRémi Lacroix   Mat_SeqBAIJ    *b_aij = (Mat_SeqBAIJ*) aij->B->data;
258547f7623dSRémi Lacroix   MatScalar      *b_val = b_aij->a;
258647f7623dSRémi Lacroix   PetscReal      *work;
258747f7623dSRémi Lacroix 
258847f7623dSRémi Lacroix   PetscFunctionBegin;
258947f7623dSRémi Lacroix   ierr = MatGetSize(A,NULL,&N);CHKERRQ(ierr);
25901795a4d1SJed Brown   ierr = PetscCalloc1(N,&work);CHKERRQ(ierr);
259147f7623dSRémi Lacroix   if (type == NORM_2) {
259247f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
259347f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
259447f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
259547f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
259647f7623dSRémi Lacroix           a_val++;
259747f7623dSRémi Lacroix         }
259847f7623dSRémi Lacroix       }
259947f7623dSRémi Lacroix     }
260047f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
260147f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
260247f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
260347f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
260447f7623dSRémi Lacroix           b_val++;
260547f7623dSRémi Lacroix         }
260647f7623dSRémi Lacroix       }
260747f7623dSRémi Lacroix     }
260847f7623dSRémi Lacroix   } else if (type == NORM_1) {
260947f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
261047f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
261147f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
261247f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
261347f7623dSRémi Lacroix           a_val++;
261447f7623dSRémi Lacroix         }
261547f7623dSRémi Lacroix       }
261647f7623dSRémi Lacroix     }
261747f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
261847f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
261947f7623dSRémi Lacroix        for (ib=0; ib<bs; ib++) {
262047f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
262147f7623dSRémi Lacroix           b_val++;
262247f7623dSRémi Lacroix         }
262347f7623dSRémi Lacroix       }
262447f7623dSRémi Lacroix     }
262547f7623dSRémi Lacroix   } else if (type == NORM_INFINITY) {
262647f7623dSRémi Lacroix     for (i=a_aij->i[0]; i<a_aij->i[aij->A->rmap->n/bs]; i++) {
262747f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
262847f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
262947f7623dSRémi Lacroix           int col = A->cmap->rstart + a_aij->j[i] * bs + jb;
263047f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
263147f7623dSRémi Lacroix           a_val++;
263247f7623dSRémi Lacroix         }
263347f7623dSRémi Lacroix       }
263447f7623dSRémi Lacroix     }
263547f7623dSRémi Lacroix     for (i=b_aij->i[0]; i<b_aij->i[aij->B->rmap->n/bs]; i++) {
263647f7623dSRémi Lacroix       for (jb=0; jb<bs; jb++) {
263747f7623dSRémi Lacroix         for (ib=0; ib<bs; ib++) {
263847f7623dSRémi Lacroix           int col = garray[b_aij->j[i]] * bs + jb;
263947f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
264047f7623dSRémi Lacroix           b_val++;
264147f7623dSRémi Lacroix         }
264247f7623dSRémi Lacroix       }
264347f7623dSRémi Lacroix     }
264447f7623dSRémi Lacroix   } else SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_ARG_WRONG,"Unknown NormType");
264547f7623dSRémi Lacroix   if (type == NORM_INFINITY) {
2646b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_MAX,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
264747f7623dSRémi Lacroix   } else {
2648b2566f29SBarry Smith     ierr = MPIU_Allreduce(work,norms,N,MPIU_REAL,MPIU_SUM,PetscObjectComm((PetscObject)A));CHKERRQ(ierr);
264947f7623dSRémi Lacroix   }
265047f7623dSRémi Lacroix   ierr = PetscFree(work);CHKERRQ(ierr);
265147f7623dSRémi Lacroix   if (type == NORM_2) {
265247f7623dSRémi Lacroix     for (i=0; i<N; i++) norms[i] = PetscSqrtReal(norms[i]);
265347f7623dSRémi Lacroix   }
265447f7623dSRémi Lacroix   PetscFunctionReturn(0);
265547f7623dSRémi Lacroix }
265647f7623dSRémi Lacroix 
265747f7623dSRémi Lacroix #undef __FUNCT__
2658bbead8a2SBarry Smith #define __FUNCT__ "MatInvertBlockDiagonal_MPIBAIJ"
2659713ccfa9SJed Brown PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A,const PetscScalar **values)
2660bbead8a2SBarry Smith {
2661bbead8a2SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*) A->data;
2662bbead8a2SBarry Smith   PetscErrorCode ierr;
2663bbead8a2SBarry Smith 
2664bbead8a2SBarry Smith   PetscFunctionBegin;
2665bbead8a2SBarry Smith   ierr = MatInvertBlockDiagonal(a->A,values);CHKERRQ(ierr);
2666d7806518SHong Zhang   A->errortype = a->A->errortype;
2667bbead8a2SBarry Smith   PetscFunctionReturn(0);
2668bbead8a2SBarry Smith }
2669bbead8a2SBarry Smith 
26707d68702bSBarry Smith #undef __FUNCT__
26717d68702bSBarry Smith #define __FUNCT__ "MatShift_MPIBAIJ"
26727d68702bSBarry Smith PetscErrorCode MatShift_MPIBAIJ(Mat Y,PetscScalar a)
26737d68702bSBarry Smith {
26747d68702bSBarry Smith   PetscErrorCode ierr;
26757d68702bSBarry Smith   Mat_MPIBAIJ    *maij = (Mat_MPIBAIJ*)Y->data;
26766f33a894SBarry Smith   Mat_SeqBAIJ    *aij = (Mat_SeqBAIJ*)maij->A->data;
26777d68702bSBarry Smith 
26787d68702bSBarry Smith   PetscFunctionBegin;
26796f33a894SBarry Smith   if (!Y->preallocated) {
26807d68702bSBarry Smith     ierr = MatMPIBAIJSetPreallocation(Y,Y->rmap->bs,1,NULL,0,NULL);CHKERRQ(ierr);
26816f33a894SBarry Smith   } else if (!aij->nz) {
2682b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
26836f33a894SBarry Smith     ierr = MatSeqBAIJSetPreallocation(maij->A,Y->rmap->bs,1,NULL);CHKERRQ(ierr);
2684b83222d8SBarry Smith     aij->nonew = nonew;
26857d68702bSBarry Smith   }
26867d68702bSBarry Smith   ierr = MatShift_Basic(Y,a);CHKERRQ(ierr);
26877d68702bSBarry Smith   PetscFunctionReturn(0);
26887d68702bSBarry Smith }
26898c7482ecSBarry Smith 
26903b49f96aSBarry Smith #undef __FUNCT__
26913b49f96aSBarry Smith #define __FUNCT__ "MatMissingDiagonal_MPIBAIJ"
26923b49f96aSBarry Smith PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A,PetscBool  *missing,PetscInt *d)
26933b49f96aSBarry Smith {
26943b49f96aSBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
26953b49f96aSBarry Smith   PetscErrorCode ierr;
26963b49f96aSBarry Smith 
26973b49f96aSBarry Smith   PetscFunctionBegin;
26983b49f96aSBarry Smith   if (A->rmap->n != A->cmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"Only works for square matrices");
26993b49f96aSBarry Smith   ierr = MatMissingDiagonal(a->A,missing,d);CHKERRQ(ierr);
27003b49f96aSBarry Smith   if (d) {
27013b49f96aSBarry Smith     PetscInt rstart;
27023b49f96aSBarry Smith     ierr = MatGetOwnershipRange(A,&rstart,NULL);CHKERRQ(ierr);
27033b49f96aSBarry Smith     *d += rstart/A->rmap->bs;
27043b49f96aSBarry Smith 
27053b49f96aSBarry Smith   }
27063b49f96aSBarry Smith   PetscFunctionReturn(0);
27073b49f96aSBarry Smith }
27083b49f96aSBarry Smith 
270979bdfe76SSatish Balay /* -------------------------------------------------------------------*/
27103964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2711cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2712cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2713cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
271497304618SKris Buschelman                                 /* 4*/ MatMultAdd_MPIBAIJ,
27157c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
27167c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2717cc2dc46cSBarry Smith                                        0,
2718cc2dc46cSBarry Smith                                        0,
2719cc2dc46cSBarry Smith                                        0,
272097304618SKris Buschelman                                 /*10*/ 0,
2721cc2dc46cSBarry Smith                                        0,
2722cc2dc46cSBarry Smith                                        0,
2723b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2724cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
272597304618SKris Buschelman                                 /*15*/ MatGetInfo_MPIBAIJ,
27267fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2727cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2728cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2729cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
273097304618SKris Buschelman                                 /*20*/ MatAssemblyBegin_MPIBAIJ,
2731cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2732cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2733cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2734d519adbfSMatthew Knepley                                 /*24*/ MatZeroRows_MPIBAIJ,
2735cc2dc46cSBarry Smith                                        0,
2736cc2dc46cSBarry Smith                                        0,
2737cc2dc46cSBarry Smith                                        0,
2738cc2dc46cSBarry Smith                                        0,
27394994cf47SJed Brown                                 /*29*/ MatSetUp_MPIBAIJ,
2740273d9f13SBarry Smith                                        0,
2741cc2dc46cSBarry Smith                                        0,
2742cc2dc46cSBarry Smith                                        0,
2743cc2dc46cSBarry Smith                                        0,
2744d519adbfSMatthew Knepley                                 /*34*/ MatDuplicate_MPIBAIJ,
2745cc2dc46cSBarry Smith                                        0,
2746cc2dc46cSBarry Smith                                        0,
2747cc2dc46cSBarry Smith                                        0,
2748cc2dc46cSBarry Smith                                        0,
2749d519adbfSMatthew Knepley                                 /*39*/ MatAXPY_MPIBAIJ,
2750cc2dc46cSBarry Smith                                        MatGetSubMatrices_MPIBAIJ,
2751cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2752cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
27533c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2754d519adbfSMatthew Knepley                                 /*44*/ 0,
2755cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
27567d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2757cc2dc46cSBarry Smith                                        0,
27586f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2759f73d5cc4SBarry Smith                                 /*49*/ 0,
2760cc2dc46cSBarry Smith                                        0,
2761cc2dc46cSBarry Smith                                        0,
2762cc2dc46cSBarry Smith                                        0,
2763cc2dc46cSBarry Smith                                        0,
276493dfae19SHong Zhang                                 /*54*/ MatFDColoringCreate_MPIXAIJ,
2765cc2dc46cSBarry Smith                                        0,
2766cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
276782094794SBarry Smith                                        MatPermute_MPIBAIJ,
2768cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
2769d519adbfSMatthew Knepley                                 /*59*/ MatGetSubMatrix_MPIBAIJ,
2770f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2771f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2772357abbc8SBarry Smith                                        0,
27737843d17aSBarry Smith                                        0,
2774d519adbfSMatthew Knepley                                 /*64*/ 0,
27757843d17aSBarry Smith                                        0,
27767843d17aSBarry Smith                                        0,
27777843d17aSBarry Smith                                        0,
27787843d17aSBarry Smith                                        0,
2779d519adbfSMatthew Knepley                                 /*69*/ MatGetRowMaxAbs_MPIBAIJ,
27807843d17aSBarry Smith                                        0,
278197304618SKris Buschelman                                        0,
278297304618SKris Buschelman                                        0,
278397304618SKris Buschelman                                        0,
2784d519adbfSMatthew Knepley                                 /*74*/ 0,
2785f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
278697304618SKris Buschelman                                        0,
278797304618SKris Buschelman                                        0,
278897304618SKris Buschelman                                        0,
2789d519adbfSMatthew Knepley                                 /*79*/ 0,
279097304618SKris Buschelman                                        0,
279197304618SKris Buschelman                                        0,
279297304618SKris Buschelman                                        0,
27935bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2794d519adbfSMatthew Knepley                                 /*84*/ 0,
2795865e5f61SKris Buschelman                                        0,
2796865e5f61SKris Buschelman                                        0,
2797865e5f61SKris Buschelman                                        0,
2798865e5f61SKris Buschelman                                        0,
2799d519adbfSMatthew Knepley                                 /*89*/ 0,
2800865e5f61SKris Buschelman                                        0,
2801865e5f61SKris Buschelman                                        0,
2802865e5f61SKris Buschelman                                        0,
2803865e5f61SKris Buschelman                                        0,
2804d519adbfSMatthew Knepley                                 /*94*/ 0,
2805865e5f61SKris Buschelman                                        0,
2806865e5f61SKris Buschelman                                        0,
280799cafbc1SBarry Smith                                        0,
280899cafbc1SBarry Smith                                        0,
2809d519adbfSMatthew Knepley                                 /*99*/ 0,
281099cafbc1SBarry Smith                                        0,
281199cafbc1SBarry Smith                                        0,
281299cafbc1SBarry Smith                                        0,
281399cafbc1SBarry Smith                                        0,
2814d519adbfSMatthew Knepley                                 /*104*/0,
281599cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
28168c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
28178c7482ecSBarry Smith                                        0,
28188c7482ecSBarry Smith                                        0,
2819d519adbfSMatthew Knepley                                 /*109*/0,
28208c7482ecSBarry Smith                                        0,
28218c7482ecSBarry Smith                                        0,
28228c7482ecSBarry Smith                                        0,
28233b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2824d1adec66SJed Brown                                 /*114*/MatGetSeqNonzeroStructure_MPIBAIJ,
28258c7482ecSBarry Smith                                        0,
28264683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
28274683f7a4SShri Abhyankar                                        0,
28284683f7a4SShri Abhyankar                                        0,
28294683f7a4SShri Abhyankar                                 /*119*/0,
28304683f7a4SShri Abhyankar                                        0,
28314683f7a4SShri Abhyankar                                        0,
2832bbead8a2SBarry Smith                                        0,
2833e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2834bbead8a2SBarry Smith                                 /*124*/0,
283547f7623dSRémi Lacroix                                        MatGetColumnNorms_MPIBAIJ,
28363964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
28373964eb88SJed Brown                                        0,
28383964eb88SJed Brown                                        0,
28393964eb88SJed Brown                                /*129*/ 0,
28403964eb88SJed Brown                                        0,
28413964eb88SJed Brown                                        0,
28423964eb88SJed Brown                                        0,
28433964eb88SJed Brown                                        0,
28443964eb88SJed Brown                                /*134*/ 0,
28453964eb88SJed Brown                                        0,
28463964eb88SJed Brown                                        0,
28473964eb88SJed Brown                                        0,
28483964eb88SJed Brown                                        0,
28493964eb88SJed Brown                                /*139*/ 0,
2850f9426fe0SMark Adams                                        0,
28511919a2e2SJed Brown                                        0,
2852bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2853bdf6f3fcSHong Zhang                                        0,
2854bdf6f3fcSHong Zhang                                 /*144*/MatCreateMPIMatConcatenateSeqMat_MPIBAIJ
28558c7482ecSBarry Smith };
285679bdfe76SSatish Balay 
28574a2ae208SSatish Balay #undef __FUNCT__
28584a2ae208SSatish Balay #define __FUNCT__ "MatGetDiagonalBlock_MPIBAIJ"
285911bd1e4dSLisandro Dalcin PetscErrorCode  MatGetDiagonalBlock_MPIBAIJ(Mat A,Mat *a)
28605ef9f2a5SBarry Smith {
28615ef9f2a5SBarry Smith   PetscFunctionBegin;
28625ef9f2a5SBarry Smith   *a = ((Mat_MPIBAIJ*)A->data)->A;
28635ef9f2a5SBarry Smith   PetscFunctionReturn(0);
28645ef9f2a5SBarry Smith }
286579bdfe76SSatish Balay 
2866cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType,MatReuse,Mat*);
2867d94109b8SHong Zhang 
2868aac34f13SBarry Smith #undef __FUNCT__
2869aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR_MPIBAIJ"
2870cf12db73SBarry Smith PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B,PetscInt bs,const PetscInt ii[],const PetscInt jj[],const PetscScalar V[])
2871aac34f13SBarry Smith {
2872b8d659d7SLisandro Dalcin   PetscInt       m,rstart,cstart,cend;
2873b8d659d7SLisandro Dalcin   PetscInt       i,j,d,nz,nz_max=0,*d_nnz=0,*o_nnz=0;
2874b8d659d7SLisandro Dalcin   const PetscInt *JJ    =0;
2875b8d659d7SLisandro Dalcin   PetscScalar    *values=0;
2876d47bf9aaSJed Brown   PetscBool      roworiented = ((Mat_MPIBAIJ*)B->data)->roworiented;
2877aac34f13SBarry Smith   PetscErrorCode ierr;
2878aac34f13SBarry Smith 
2879aac34f13SBarry Smith   PetscFunctionBegin;
288026283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->rmap,bs);CHKERRQ(ierr);
288126283091SBarry Smith   ierr   = PetscLayoutSetBlockSize(B->cmap,bs);CHKERRQ(ierr);
288226283091SBarry Smith   ierr   = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
288326283091SBarry Smith   ierr   = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2884e02043d6SBarry Smith   ierr   = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2885d0f46423SBarry Smith   m      = B->rmap->n/bs;
2886d0f46423SBarry Smith   rstart = B->rmap->rstart/bs;
2887d0f46423SBarry Smith   cstart = B->cmap->rstart/bs;
2888d0f46423SBarry Smith   cend   = B->cmap->rend/bs;
2889b8d659d7SLisandro Dalcin 
2890e32f2f54SBarry Smith   if (ii[0]) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"ii[0] must be 0 but it is %D",ii[0]);
2891dcca6d9dSJed Brown   ierr = PetscMalloc2(m,&d_nnz,m,&o_nnz);CHKERRQ(ierr);
2892aac34f13SBarry Smith   for (i=0; i<m; i++) {
2893cf12db73SBarry Smith     nz = ii[i+1] - ii[i];
2894e32f2f54SBarry Smith     if (nz < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local row %D has a negative number of columns %D",i,nz);
2895b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max,nz);
2896cf12db73SBarry Smith     JJ     = jj + ii[i];
2897b8d659d7SLisandro Dalcin     for (j=0; j<nz; j++) {
2898aac34f13SBarry Smith       if (*JJ >= cstart) break;
2899aac34f13SBarry Smith       JJ++;
2900aac34f13SBarry Smith     }
2901aac34f13SBarry Smith     d = 0;
2902b8d659d7SLisandro Dalcin     for (; j<nz; j++) {
2903aac34f13SBarry Smith       if (*JJ++ >= cend) break;
2904aac34f13SBarry Smith       d++;
2905aac34f13SBarry Smith     }
2906aac34f13SBarry Smith     d_nnz[i] = d;
2907b8d659d7SLisandro Dalcin     o_nnz[i] = nz - d;
2908aac34f13SBarry Smith   }
2909aac34f13SBarry Smith   ierr = MatMPIBAIJSetPreallocation(B,bs,0,d_nnz,0,o_nnz);CHKERRQ(ierr);
2910fca92195SBarry Smith   ierr = PetscFree2(d_nnz,o_nnz);CHKERRQ(ierr);
2911aac34f13SBarry Smith 
2912b8d659d7SLisandro Dalcin   values = (PetscScalar*)V;
2913b8d659d7SLisandro Dalcin   if (!values) {
2914785e854fSJed Brown     ierr = PetscMalloc1(bs*bs*nz_max,&values);CHKERRQ(ierr);
2915b8d659d7SLisandro Dalcin     ierr = PetscMemzero(values,bs*bs*nz_max*sizeof(PetscScalar));CHKERRQ(ierr);
2916b8d659d7SLisandro Dalcin   }
2917b8d659d7SLisandro Dalcin   for (i=0; i<m; i++) {
2918b8d659d7SLisandro Dalcin     PetscInt          row    = i + rstart;
2919cf12db73SBarry Smith     PetscInt          ncols  = ii[i+1] - ii[i];
2920cf12db73SBarry Smith     const PetscInt    *icols = jj + ii[i];
29213adadaf3SJed Brown     if (!roworiented) {         /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2922cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs*bs*ii[i]) : 0);
2923b8d659d7SLisandro Dalcin       ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,ncols,icols,svals,INSERT_VALUES);CHKERRQ(ierr);
29243adadaf3SJed Brown     } else {                    /* block ordering does not match so we can only insert one block at a time. */
29253adadaf3SJed Brown       PetscInt j;
29263adadaf3SJed Brown       for (j=0; j<ncols; j++) {
29273adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs*bs*(ii[i]+j)) : 0);
29283adadaf3SJed Brown         ierr = MatSetValuesBlocked_MPIBAIJ(B,1,&row,1,&icols[j],svals,INSERT_VALUES);CHKERRQ(ierr);
29293adadaf3SJed Brown       }
29303adadaf3SJed Brown     }
2931aac34f13SBarry Smith   }
2932aac34f13SBarry Smith 
2933b8d659d7SLisandro Dalcin   if (!V) { ierr = PetscFree(values);CHKERRQ(ierr); }
2934aac34f13SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
2935aac34f13SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
29367827cd58SJed Brown   ierr = MatSetOption(B,MAT_NEW_NONZERO_LOCATION_ERR,PETSC_TRUE);CHKERRQ(ierr);
2937aac34f13SBarry Smith   PetscFunctionReturn(0);
2938aac34f13SBarry Smith }
2939aac34f13SBarry Smith 
2940aac34f13SBarry Smith #undef __FUNCT__
2941aac34f13SBarry Smith #define __FUNCT__ "MatMPIBAIJSetPreallocationCSR"
2942aac34f13SBarry Smith /*@C
2943dfb205c3SBarry Smith    MatMPIBAIJSetPreallocationCSR - Allocates memory for a sparse parallel matrix in BAIJ format
2944aac34f13SBarry Smith    (the default parallel PETSc format).
2945aac34f13SBarry Smith 
2946aac34f13SBarry Smith    Collective on MPI_Comm
2947aac34f13SBarry Smith 
2948aac34f13SBarry Smith    Input Parameters:
29491c4f3114SJed Brown +  B - the matrix
2950dfb205c3SBarry Smith .  bs - the block size
2951aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2952aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2953aac34f13SBarry Smith -  v - optional values in the matrix
2954aac34f13SBarry Smith 
2955aac34f13SBarry Smith    Level: developer
2956aac34f13SBarry Smith 
29573adadaf3SJed Brown    Notes: The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
29583adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
29593adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
29603adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
29613adadaf3SJed Brown    block column and the second index is over columns within a block.
29623adadaf3SJed Brown 
2963aac34f13SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
2964aac34f13SBarry Smith 
29653adadaf3SJed Brown .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIBAIJSetPreallocation(), MatCreateAIJ(), MPIAIJ, MatCreateMPIBAIJWithArrays(), MPIBAIJ
2966aac34f13SBarry Smith @*/
29677087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocationCSR(Mat B,PetscInt bs,const PetscInt i[],const PetscInt j[], const PetscScalar v[])
2968aac34f13SBarry Smith {
29694ac538c5SBarry Smith   PetscErrorCode ierr;
2970aac34f13SBarry Smith 
2971aac34f13SBarry Smith   PetscFunctionBegin;
29726ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
29736ba663aaSJed Brown   PetscValidType(B,1);
29746ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
29754ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocationCSR_C",(Mat,PetscInt,const PetscInt[],const PetscInt[],const PetscScalar[]),(B,bs,i,j,v));CHKERRQ(ierr);
2976aac34f13SBarry Smith   PetscFunctionReturn(0);
2977aac34f13SBarry Smith }
2978aac34f13SBarry Smith 
29794a2ae208SSatish Balay #undef __FUNCT__
2980a23d5eceSKris Buschelman #define __FUNCT__ "MatMPIBAIJSetPreallocation_MPIBAIJ"
2981b2573a8aSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt *d_nnz,PetscInt o_nz,const PetscInt *o_nnz)
2982a23d5eceSKris Buschelman {
2983a23d5eceSKris Buschelman   Mat_MPIBAIJ    *b;
2984dfbe8321SBarry Smith   PetscErrorCode ierr;
2985535b19f3SBarry Smith   PetscInt       i;
2986a23d5eceSKris Buschelman 
2987a23d5eceSKris Buschelman   PetscFunctionBegin;
298833d57670SJed Brown   ierr = MatSetBlockSize(B,PetscAbs(bs));CHKERRQ(ierr);
298926283091SBarry Smith   ierr = PetscLayoutSetUp(B->rmap);CHKERRQ(ierr);
299026283091SBarry Smith   ierr = PetscLayoutSetUp(B->cmap);CHKERRQ(ierr);
2991e02043d6SBarry Smith   ierr = PetscLayoutGetBlockSize(B->rmap,&bs);CHKERRQ(ierr);
2992899cda47SBarry Smith 
2993a23d5eceSKris Buschelman   if (d_nnz) {
2994d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
2995e32f2f54SBarry Smith       if (d_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"d_nnz cannot be less than -1: local row %D value %D",i,d_nnz[i]);
2996a23d5eceSKris Buschelman     }
2997a23d5eceSKris Buschelman   }
2998a23d5eceSKris Buschelman   if (o_nnz) {
2999d0f46423SBarry Smith     for (i=0; i<B->rmap->n/bs; i++) {
3000e32f2f54SBarry Smith       if (o_nnz[i] < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"o_nnz cannot be less than -1: local row %D value %D",i,o_nnz[i]);
3001a23d5eceSKris Buschelman     }
3002a23d5eceSKris Buschelman   }
3003a23d5eceSKris Buschelman 
3004a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ*)B->data;
3005a23d5eceSKris Buschelman   b->bs2 = bs*bs;
3006d0f46423SBarry Smith   b->mbs = B->rmap->n/bs;
3007d0f46423SBarry Smith   b->nbs = B->cmap->n/bs;
3008d0f46423SBarry Smith   b->Mbs = B->rmap->N/bs;
3009d0f46423SBarry Smith   b->Nbs = B->cmap->N/bs;
3010a23d5eceSKris Buschelman 
3011a23d5eceSKris Buschelman   for (i=0; i<=b->size; i++) {
3012d0f46423SBarry Smith     b->rangebs[i] = B->rmap->range[i]/bs;
3013a23d5eceSKris Buschelman   }
3014d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart/bs;
3015d0f46423SBarry Smith   b->rendbs   = B->rmap->rend/bs;
3016d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart/bs;
3017d0f46423SBarry Smith   b->cendbs   = B->cmap->rend/bs;
3018a23d5eceSKris Buschelman 
3019526dfc15SBarry Smith   if (!B->preallocated) {
3020f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->A);CHKERRQ(ierr);
3021d0f46423SBarry Smith     ierr = MatSetSizes(b->A,B->rmap->n,B->cmap->n,B->rmap->n,B->cmap->n);CHKERRQ(ierr);
30229c097c71SKris Buschelman     ierr = MatSetType(b->A,MATSEQBAIJ);CHKERRQ(ierr);
30233bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->A);CHKERRQ(ierr);
3024f69a0ea3SMatthew Knepley     ierr = MatCreate(PETSC_COMM_SELF,&b->B);CHKERRQ(ierr);
3025d0f46423SBarry Smith     ierr = MatSetSizes(b->B,B->rmap->n,B->cmap->N,B->rmap->n,B->cmap->N);CHKERRQ(ierr);
30269c097c71SKris Buschelman     ierr = MatSetType(b->B,MATSEQBAIJ);CHKERRQ(ierr);
30273bb1ff40SBarry Smith     ierr = PetscLogObjectParent((PetscObject)B,(PetscObject)b->B);CHKERRQ(ierr);
3028ce94432eSBarry Smith     ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),bs,&B->bstash);CHKERRQ(ierr);
3029526dfc15SBarry Smith   }
3030a23d5eceSKris Buschelman 
3031526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->A,bs,d_nz,d_nnz);CHKERRQ(ierr);
3032526dfc15SBarry Smith   ierr = MatSeqBAIJSetPreallocation(b->B,bs,o_nz,o_nnz);CHKERRQ(ierr);
3033526dfc15SBarry Smith   B->preallocated = PETSC_TRUE;
3034a23d5eceSKris Buschelman   PetscFunctionReturn(0);
3035a23d5eceSKris Buschelman }
3036a23d5eceSKris Buschelman 
30377087cfbeSBarry Smith extern PetscErrorCode  MatDiagonalScaleLocal_MPIBAIJ(Mat,Vec);
30387087cfbeSBarry Smith extern PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat,PetscReal);
30395bf65638SKris Buschelman 
304082094794SBarry Smith #undef __FUNCT__
304182094794SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAdj"
3042cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype,MatReuse reuse,Mat *adj)
304382094794SBarry Smith {
304482094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ*)B->data;
304582094794SBarry Smith   PetscErrorCode ierr;
304682094794SBarry Smith   Mat_SeqBAIJ    *d  = (Mat_SeqBAIJ*) b->A->data,*o = (Mat_SeqBAIJ*) b->B->data;
304782094794SBarry Smith   PetscInt       M   = B->rmap->n/B->rmap->bs,i,*ii,*jj,cnt,j,k,rstart = B->rmap->rstart/B->rmap->bs;
304882094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
304982094794SBarry Smith 
305082094794SBarry Smith   PetscFunctionBegin;
3051854ce69bSBarry Smith   ierr  = PetscMalloc1(M+1,&ii);CHKERRQ(ierr);
305282094794SBarry Smith   ii[0] = 0;
305382094794SBarry Smith   for (i=0; i<M; i++) {
3054e32f2f54SBarry Smith     if ((id[i+1] - id[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,id[i],id[i+1]);
3055e32f2f54SBarry Smith     if ((io[i+1] - io[i]) < 0) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Indices wrong %D %D %D",i,io[i],io[i+1]);
305682094794SBarry Smith     ii[i+1] = ii[i] + id[i+1] - id[i] + io[i+1] - io[i];
30575ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
30585ee9ba1cSJed Brown     for (j=id[i]; j<id[i+1]; j++) {
30595ee9ba1cSJed Brown       if (jd[j] == i) {ii[i+1]--;break;}
30605ee9ba1cSJed Brown     }
306182094794SBarry Smith   }
3062785e854fSJed Brown   ierr = PetscMalloc1(ii[M],&jj);CHKERRQ(ierr);
306382094794SBarry Smith   cnt  = 0;
306482094794SBarry Smith   for (i=0; i<M; i++) {
306582094794SBarry Smith     for (j=io[i]; j<io[i+1]; j++) {
306682094794SBarry Smith       if (garray[jo[j]] > rstart) break;
306782094794SBarry Smith       jj[cnt++] = garray[jo[j]];
306882094794SBarry Smith     }
306982094794SBarry Smith     for (k=id[i]; k<id[i+1]; k++) {
30705ee9ba1cSJed Brown       if (jd[k] != i) {
307182094794SBarry Smith         jj[cnt++] = rstart + jd[k];
307282094794SBarry Smith       }
30735ee9ba1cSJed Brown     }
307482094794SBarry Smith     for (; j<io[i+1]; j++) {
307582094794SBarry Smith       jj[cnt++] = garray[jo[j]];
307682094794SBarry Smith     }
307782094794SBarry Smith   }
3078ce94432eSBarry Smith   ierr = MatCreateMPIAdj(PetscObjectComm((PetscObject)B),M,B->cmap->N/B->rmap->bs,ii,jj,NULL,adj);CHKERRQ(ierr);
307982094794SBarry Smith   PetscFunctionReturn(0);
308082094794SBarry Smith }
308182094794SBarry Smith 
3082c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
308362471d69SBarry Smith 
3084cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat,MatType,MatReuse,Mat*);
3085b2573a8aSBarry Smith 
308662471d69SBarry Smith #undef __FUNCT__
308762471d69SBarry Smith #define __FUNCT__ "MatConvert_MPIBAIJ_MPIAIJ"
3088cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A,MatType newtype,MatReuse reuse,Mat *newmat)
308962471d69SBarry Smith {
309062471d69SBarry Smith   PetscErrorCode ierr;
309162471d69SBarry Smith   Mat_MPIBAIJ    *a = (Mat_MPIBAIJ*)A->data;
309262471d69SBarry Smith   Mat            B;
309385a69837SSatish Balay   Mat_MPIAIJ     *b;
309462471d69SBarry Smith 
309562471d69SBarry Smith   PetscFunctionBegin;
3096ce94432eSBarry Smith   if (!A->assembled) SETERRQ(PetscObjectComm((PetscObject)A),PETSC_ERR_SUP,"Matrix must be assembled");
309762471d69SBarry Smith 
3098ce94432eSBarry Smith   ierr = MatCreate(PetscObjectComm((PetscObject)A),&B);CHKERRQ(ierr);
30996d0a4a0eSHong Zhang   ierr = MatSetType(B,MATMPIAIJ);CHKERRQ(ierr);
3100f090d951SRémi Lacroix   ierr = MatSetSizes(B,A->rmap->n,A->cmap->n,A->rmap->N,A->cmap->N);CHKERRQ(ierr);
3101f090d951SRémi Lacroix   ierr = MatSetBlockSizes(B,A->rmap->bs,A->cmap->bs);CHKERRQ(ierr);
31020298fd71SBarry Smith   ierr = MatSeqAIJSetPreallocation(B,0,NULL);CHKERRQ(ierr);
31030298fd71SBarry Smith   ierr = MatMPIAIJSetPreallocation(B,0,NULL,0,NULL);CHKERRQ(ierr);
310462471d69SBarry Smith   b    = (Mat_MPIAIJ*) B->data;
310562471d69SBarry Smith 
31066bf464f9SBarry Smith   ierr = MatDestroy(&b->A);CHKERRQ(ierr);
31076bf464f9SBarry Smith   ierr = MatDestroy(&b->B);CHKERRQ(ierr);
3108ab9863d7SBarry Smith   ierr = MatDisAssemble_MPIBAIJ(A);CHKERRQ(ierr);
310962471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A);CHKERRQ(ierr);
311062471d69SBarry Smith   ierr = MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B);CHKERRQ(ierr);
311162471d69SBarry Smith   ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
311262471d69SBarry Smith   ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31136a719282SBarry Smith   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
31146a719282SBarry Smith   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
3115511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
311628be2f97SBarry Smith     ierr = MatHeaderReplace(A,&B);CHKERRQ(ierr);
311762471d69SBarry Smith   } else {
311862471d69SBarry Smith    *newmat = B;
311962471d69SBarry Smith   }
312062471d69SBarry Smith   PetscFunctionReturn(0);
312162471d69SBarry Smith }
312262471d69SBarry Smith 
31230bad9183SKris Buschelman /*MC
3124fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
31250bad9183SKris Buschelman 
31260bad9183SKris Buschelman    Options Database Keys:
31278c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
31288c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
31298c07d4e3SBarry Smith - -mat_use_hash_table <fact>
31300bad9183SKris Buschelman 
31310bad9183SKris Buschelman   Level: beginner
31320bad9183SKris Buschelman 
31330bad9183SKris Buschelman .seealso: MatCreateMPIBAIJ
31340bad9183SKris Buschelman M*/
31350bad9183SKris Buschelman 
3136cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat,MatType,MatReuse,Mat*);
3137c0cdd4a1SDahai Guo 
3138a23d5eceSKris Buschelman #undef __FUNCT__
31394a2ae208SSatish Balay #define __FUNCT__ "MatCreate_MPIBAIJ"
31408cc058d9SJed Brown PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B)
3141273d9f13SBarry Smith {
3142273d9f13SBarry Smith   Mat_MPIBAIJ    *b;
3143dfbe8321SBarry Smith   PetscErrorCode ierr;
314494ae4db5SBarry Smith   PetscBool      flg = PETSC_FALSE;
3145273d9f13SBarry Smith 
3146273d9f13SBarry Smith   PetscFunctionBegin;
3147b00a9115SJed Brown   ierr    = PetscNewLog(B,&b);CHKERRQ(ierr);
314882502324SSatish Balay   B->data = (void*)b;
314982502324SSatish Balay 
3150273d9f13SBarry Smith   ierr         = PetscMemcpy(B->ops,&MatOps_Values,sizeof(struct _MatOps));CHKERRQ(ierr);
3151273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
3152273d9f13SBarry Smith 
3153273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
3154ce94432eSBarry Smith   ierr          = MPI_Comm_rank(PetscObjectComm((PetscObject)B),&b->rank);CHKERRQ(ierr);
3155ce94432eSBarry Smith   ierr          = MPI_Comm_size(PetscObjectComm((PetscObject)B),&b->size);CHKERRQ(ierr);
3156273d9f13SBarry Smith 
3157273d9f13SBarry Smith   /* build local table of row and column ownerships */
3158854ce69bSBarry Smith   ierr = PetscMalloc1(b->size+1,&b->rangebs);CHKERRQ(ierr);
3159273d9f13SBarry Smith 
3160273d9f13SBarry Smith   /* build cache for off array entries formed */
3161ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)B),1,&B->stash);CHKERRQ(ierr);
316226fbe8dcSKarl Rupp 
3163273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
31640298fd71SBarry Smith   b->colmap      = NULL;
31650298fd71SBarry Smith   b->garray      = NULL;
3166273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
3167273d9f13SBarry Smith 
3168273d9f13SBarry Smith   /* stuff used in block assembly */
3169273d9f13SBarry Smith   b->barray = 0;
3170273d9f13SBarry Smith 
3171273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
3172273d9f13SBarry Smith   b->lvec  = 0;
3173273d9f13SBarry Smith   b->Mvctx = 0;
3174273d9f13SBarry Smith 
3175273d9f13SBarry Smith   /* stuff for MatGetRow() */
3176273d9f13SBarry Smith   b->rowindices   = 0;
3177273d9f13SBarry Smith   b->rowvalues    = 0;
3178273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
3179273d9f13SBarry Smith 
3180273d9f13SBarry Smith   /* hash table stuff */
3181273d9f13SBarry Smith   b->ht           = 0;
3182273d9f13SBarry Smith   b->hd           = 0;
3183273d9f13SBarry Smith   b->ht_size      = 0;
3184273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
3185273d9f13SBarry Smith   b->ht_fact      = 0;
3186273d9f13SBarry Smith   b->ht_total_ct  = 0;
3187273d9f13SBarry Smith   b->ht_insert_ct = 0;
3188273d9f13SBarry Smith 
31897a868f3eSHong Zhang   /* stuff for MatGetSubMatrices_MPIBAIJ_local() */
31907a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
31917a868f3eSHong Zhang 
31928c07d4e3SBarry Smith 
3193bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiadj_C",MatConvert_MPIBAIJ_MPIAdj);CHKERRQ(ierr);
3194bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpiaij_C",MatConvert_MPIBAIJ_MPIAIJ);CHKERRQ(ierr);
3195bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpisbaij_C",MatConvert_MPIBAIJ_MPISBAIJ);CHKERRQ(ierr);
3196bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatStoreValues_C",MatStoreValues_MPIBAIJ);CHKERRQ(ierr);
3197bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatRetrieveValues_C",MatRetrieveValues_MPIBAIJ);CHKERRQ(ierr);
3198bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatGetDiagonalBlock_C",MatGetDiagonalBlock_MPIBAIJ);CHKERRQ(ierr);
3199bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocation_C",MatMPIBAIJSetPreallocation_MPIBAIJ);CHKERRQ(ierr);
3200bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatMPIBAIJSetPreallocationCSR_C",MatMPIBAIJSetPreallocationCSR_MPIBAIJ);CHKERRQ(ierr);
3201bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatDiagonalScaleLocal_C",MatDiagonalScaleLocal_MPIBAIJ);CHKERRQ(ierr);
3202bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatSetHashTableFactor_C",MatSetHashTableFactor_MPIBAIJ);CHKERRQ(ierr);
3203bdf89e91SBarry Smith   ierr = PetscObjectComposeFunction((PetscObject)B,"MatConvert_mpibaij_mpibstrm_C",MatConvert_MPIBAIJ_MPIBSTRM);CHKERRQ(ierr);
320417667f90SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)B,MATMPIBAIJ);CHKERRQ(ierr);
320594ae4db5SBarry Smith 
320694ae4db5SBarry Smith   ierr = PetscOptionsBegin(PetscObjectComm((PetscObject)B),NULL,"Options for loading MPIBAIJ matrix 1","Mat");CHKERRQ(ierr);
320794ae4db5SBarry Smith   ierr = PetscOptionsBool("-mat_use_hash_table","Use hash table to save memory in constructing matrix","MatSetOption",flg,&flg,NULL);CHKERRQ(ierr);
320894ae4db5SBarry Smith   if (flg) {
320994ae4db5SBarry Smith     PetscReal fact = 1.39;
321094ae4db5SBarry Smith     ierr = MatSetOption(B,MAT_USE_HASH_TABLE,PETSC_TRUE);CHKERRQ(ierr);
321194ae4db5SBarry Smith     ierr = PetscOptionsReal("-mat_use_hash_table","Use hash table factor","MatMPIBAIJSetHashTableFactor",fact,&fact,NULL);CHKERRQ(ierr);
321294ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
321394ae4db5SBarry Smith     ierr = MatMPIBAIJSetHashTableFactor(B,fact);CHKERRQ(ierr);
321494ae4db5SBarry Smith     ierr = PetscInfo1(B,"Hash table Factor used %5.2f\n",fact);CHKERRQ(ierr);
321594ae4db5SBarry Smith   }
321694ae4db5SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
3217273d9f13SBarry Smith   PetscFunctionReturn(0);
3218273d9f13SBarry Smith }
3219273d9f13SBarry Smith 
3220209238afSKris Buschelman /*MC
3221002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
3222209238afSKris Buschelman 
3223209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
3224209238afSKris Buschelman    and MATMPIBAIJ otherwise.
3225209238afSKris Buschelman 
3226209238afSKris Buschelman    Options Database Keys:
3227209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
3228209238afSKris Buschelman 
3229209238afSKris Buschelman   Level: beginner
3230209238afSKris Buschelman 
323169b1f4b7SBarry Smith .seealso: MatCreateBAIJ(),MATSEQBAIJ,MATMPIBAIJ, MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
3232209238afSKris Buschelman M*/
3233209238afSKris Buschelman 
32344a2ae208SSatish Balay #undef __FUNCT__
32354a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetPreallocation"
3236273d9f13SBarry Smith /*@C
3237aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
3238273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
3239273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
3240273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
3241273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
3242273d9f13SBarry Smith 
3243273d9f13SBarry Smith    Collective on Mat
3244273d9f13SBarry Smith 
3245273d9f13SBarry Smith    Input Parameters:
32461c4f3114SJed Brown +  B - the matrix
3247bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3248bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
3249273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
3250273d9f13SBarry Smith            submatrix  (same for all local rows)
3251273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
3252273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
32530298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
325495742e49SBarry Smith            set it even if it is zero.
3255273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
3256273d9f13SBarry Smith            submatrix (same for all local rows).
3257273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
3258273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
32590298fd71SBarry Smith            each block row) or NULL.
3260273d9f13SBarry Smith 
326149a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
3262273d9f13SBarry Smith 
3263273d9f13SBarry Smith    Options Database Keys:
32648c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
32658c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
3266273d9f13SBarry Smith 
3267273d9f13SBarry Smith    Notes:
3268273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3269273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
3270273d9f13SBarry Smith 
3271273d9f13SBarry Smith    Storage Information:
3272273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
3273273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
3274273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
3275273d9f13SBarry Smith    local matrix (a rectangular submatrix).
3276273d9f13SBarry Smith 
3277273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
3278273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
32790298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
3280273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
3281273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
3282273d9f13SBarry Smith 
3283273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
3284273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
3285273d9f13SBarry Smith 
3286273d9f13SBarry Smith .vb
3287273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
3288a4b1a0f6SJed Brown           --------------------------
3289273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
3290273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
3291273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
3292a4b1a0f6SJed Brown           --------------------------
3293273d9f13SBarry Smith .ve
3294273d9f13SBarry Smith 
3295273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
3296273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
3297273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
3298273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
3299273d9f13SBarry Smith 
3300273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3301273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
3302273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
3303273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
3304273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
3305273d9f13SBarry Smith    matrices.
3306273d9f13SBarry Smith 
3307aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
3308aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
3309aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
3310aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
3311aa95bbe8SBarry Smith 
3312273d9f13SBarry Smith    Level: intermediate
3313273d9f13SBarry Smith 
3314273d9f13SBarry Smith .keywords: matrix, block, aij, compressed row, sparse, parallel
3315273d9f13SBarry Smith 
3316ab978733SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocationCSR(), PetscSplitOwnership()
3317273d9f13SBarry Smith @*/
33187087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetPreallocation(Mat B,PetscInt bs,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[])
3319273d9f13SBarry Smith {
33204ac538c5SBarry Smith   PetscErrorCode ierr;
3321273d9f13SBarry Smith 
3322273d9f13SBarry Smith   PetscFunctionBegin;
33236ba663aaSJed Brown   PetscValidHeaderSpecific(B,MAT_CLASSID,1);
33246ba663aaSJed Brown   PetscValidType(B,1);
33256ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B,bs,2);
33264ac538c5SBarry Smith   ierr = PetscTryMethod(B,"MatMPIBAIJSetPreallocation_C",(Mat,PetscInt,PetscInt,const PetscInt[],PetscInt,const PetscInt[]),(B,bs,d_nz,d_nnz,o_nz,o_nnz));CHKERRQ(ierr);
3327273d9f13SBarry Smith   PetscFunctionReturn(0);
3328273d9f13SBarry Smith }
3329273d9f13SBarry Smith 
33304a2ae208SSatish Balay #undef __FUNCT__
333169b1f4b7SBarry Smith #define __FUNCT__ "MatCreateBAIJ"
333279bdfe76SSatish Balay /*@C
333369b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
333479bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
333579bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
333679bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
333779bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
333879bdfe76SSatish Balay 
3339db81eaa0SLois Curfman McInnes    Collective on MPI_Comm
3340db81eaa0SLois Curfman McInnes 
334179bdfe76SSatish Balay    Input Parameters:
3342db81eaa0SLois Curfman McInnes +  comm - MPI communicator
3343bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
3344bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
334579bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
334692e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
334792e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
334892e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
334992e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
335092e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3351be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3352be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
335347a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
335479bdfe76SSatish Balay            submatrix  (same for all local rows)
335547a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
335692e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
33570298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
335895742e49SBarry Smith            and set it even if it is zero.
335947a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
336079bdfe76SSatish Balay            submatrix (same for all local rows).
336147a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
336292e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
33630298fd71SBarry Smith            each block row) or NULL.
336479bdfe76SSatish Balay 
336579bdfe76SSatish Balay    Output Parameter:
336679bdfe76SSatish Balay .  A - the matrix
336779bdfe76SSatish Balay 
3368db81eaa0SLois Curfman McInnes    Options Database Keys:
33698c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
33708c07d4e3SBarry Smith -   -mat_use_hash_table <fact>
33713ffaccefSLois Curfman McInnes 
3372175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3373ae1d86c5SBarry Smith    MatXXXXSetPreallocation() paradgm instead of this routine directly.
3374175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3375175b88e8SBarry Smith 
3376b259b22eSLois Curfman McInnes    Notes:
337749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
337849a6f317SBarry Smith 
337947a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
338047a75d0bSBarry Smith 
338179bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
338279bdfe76SSatish Balay    (possibly both).
338379bdfe76SSatish Balay 
3384be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3385be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3386be79a94dSBarry Smith 
338779bdfe76SSatish Balay    Storage Information:
338879bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
338979bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
339079bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
339179bdfe76SSatish Balay    local matrix (a rectangular submatrix).
339279bdfe76SSatish Balay 
339379bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
339479bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
33950298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
339679bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
339779bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
339879bdfe76SSatish Balay 
339979bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
340079bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
340179bdfe76SSatish Balay 
3402db81eaa0SLois Curfman McInnes .vb
3403db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3404a4b1a0f6SJed Brown           --------------------------
3405db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3406db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3407db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3408a4b1a0f6SJed Brown           --------------------------
3409db81eaa0SLois Curfman McInnes .ve
341079bdfe76SSatish Balay 
341179bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
341279bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
341379bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
341457b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
341579bdfe76SSatish Balay 
3416d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3417d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
341879bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
341992e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
342092e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
34216da5968aSLois Curfman McInnes    matrices.
342279bdfe76SSatish Balay 
3423027ccd11SLois Curfman McInnes    Level: intermediate
3424027ccd11SLois Curfman McInnes 
342592e8d321SLois Curfman McInnes .keywords: matrix, block, aij, compressed row, sparse, parallel
342679bdfe76SSatish Balay 
342769b1f4b7SBarry Smith .seealso: MatCreate(), MatCreateSeqBAIJ(), MatSetValues(), MatCreateBAIJ(), MatMPIBAIJSetPreallocation(), MatMPIBAIJSetPreallocationCSR()
342879bdfe76SSatish Balay @*/
342969b1f4b7SBarry Smith PetscErrorCode  MatCreateBAIJ(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,PetscInt d_nz,const PetscInt d_nnz[],PetscInt o_nz,const PetscInt o_nnz[],Mat *A)
343079bdfe76SSatish Balay {
34316849ba73SBarry Smith   PetscErrorCode ierr;
3432b24ad042SBarry Smith   PetscMPIInt    size;
343379bdfe76SSatish Balay 
3434d64ed03dSBarry Smith   PetscFunctionBegin;
3435f69a0ea3SMatthew Knepley   ierr = MatCreate(comm,A);CHKERRQ(ierr);
3436f69a0ea3SMatthew Knepley   ierr = MatSetSizes(*A,m,n,M,N);CHKERRQ(ierr);
3437d132466eSBarry Smith   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
3438273d9f13SBarry Smith   if (size > 1) {
3439273d9f13SBarry Smith     ierr = MatSetType(*A,MATMPIBAIJ);CHKERRQ(ierr);
3440273d9f13SBarry Smith     ierr = MatMPIBAIJSetPreallocation(*A,bs,d_nz,d_nnz,o_nz,o_nnz);CHKERRQ(ierr);
3441273d9f13SBarry Smith   } else {
3442273d9f13SBarry Smith     ierr = MatSetType(*A,MATSEQBAIJ);CHKERRQ(ierr);
3443273d9f13SBarry Smith     ierr = MatSeqBAIJSetPreallocation(*A,bs,d_nz,d_nnz);CHKERRQ(ierr);
34443914022bSBarry Smith   }
34453a40ed3dSBarry Smith   PetscFunctionReturn(0);
344679bdfe76SSatish Balay }
3447026e39d0SSatish Balay 
34484a2ae208SSatish Balay #undef __FUNCT__
34494a2ae208SSatish Balay #define __FUNCT__ "MatDuplicate_MPIBAIJ"
34506849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin,MatDuplicateOption cpvalues,Mat *newmat)
34510ac07820SSatish Balay {
34520ac07820SSatish Balay   Mat            mat;
34530ac07820SSatish Balay   Mat_MPIBAIJ    *a,*oldmat = (Mat_MPIBAIJ*)matin->data;
3454dfbe8321SBarry Smith   PetscErrorCode ierr;
3455b24ad042SBarry Smith   PetscInt       len=0;
34560ac07820SSatish Balay 
3457d64ed03dSBarry Smith   PetscFunctionBegin;
34580ac07820SSatish Balay   *newmat = 0;
3459ce94432eSBarry Smith   ierr    = MatCreate(PetscObjectComm((PetscObject)matin),&mat);CHKERRQ(ierr);
3460d0f46423SBarry Smith   ierr    = MatSetSizes(mat,matin->rmap->n,matin->cmap->n,matin->rmap->N,matin->cmap->N);CHKERRQ(ierr);
34617adad957SLisandro Dalcin   ierr    = MatSetType(mat,((PetscObject)matin)->type_name);CHKERRQ(ierr);
34621d5dac46SHong Zhang   ierr    = PetscMemcpy(mat->ops,matin->ops,sizeof(struct _MatOps));CHKERRQ(ierr);
34637fff6886SHong Zhang 
3464d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3465273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
34660ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
34677fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
34687fff6886SHong Zhang 
3469273d9f13SBarry Smith   a             = (Mat_MPIBAIJ*)mat->data;
3470d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
34710ac07820SSatish Balay   a->bs2        = oldmat->bs2;
34720ac07820SSatish Balay   a->mbs        = oldmat->mbs;
34730ac07820SSatish Balay   a->nbs        = oldmat->nbs;
34740ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
34750ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
34760ac07820SSatish Balay 
34771e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->rmap,&mat->rmap);CHKERRQ(ierr);
34781e1e43feSBarry Smith   ierr = PetscLayoutReference(matin->cmap,&mat->cmap);CHKERRQ(ierr);
3479899cda47SBarry Smith 
34800ac07820SSatish Balay   a->size         = oldmat->size;
34810ac07820SSatish Balay   a->rank         = oldmat->rank;
3482aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3483aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3484aef5e8e0SSatish Balay   a->rowindices   = 0;
34850ac07820SSatish Balay   a->rowvalues    = 0;
34860ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
348730793edcSSatish Balay   a->barray       = 0;
3488899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3489899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3490899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3491899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
34920ac07820SSatish Balay 
3493133cdb44SSatish Balay   /* hash table stuff */
3494133cdb44SSatish Balay   a->ht           = 0;
3495133cdb44SSatish Balay   a->hd           = 0;
3496133cdb44SSatish Balay   a->ht_size      = 0;
3497133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
349825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3499133cdb44SSatish Balay   a->ht_total_ct  = 0;
3500133cdb44SSatish Balay   a->ht_insert_ct = 0;
3501133cdb44SSatish Balay 
3502899cda47SBarry Smith   ierr = PetscMemcpy(a->rangebs,oldmat->rangebs,(a->size+1)*sizeof(PetscInt));CHKERRQ(ierr);
35030ac07820SSatish Balay   if (oldmat->colmap) {
3504aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
35050f5bd95cSBarry Smith     ierr = PetscTableCreateCopy(oldmat->colmap,&a->colmap);CHKERRQ(ierr);
350648e59246SSatish Balay #else
3507854ce69bSBarry Smith     ierr = PetscMalloc1(a->Nbs,&a->colmap);CHKERRQ(ierr);
35083bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
3509b24ad042SBarry Smith     ierr = PetscMemcpy(a->colmap,oldmat->colmap,(a->Nbs)*sizeof(PetscInt));CHKERRQ(ierr);
351048e59246SSatish Balay #endif
35110ac07820SSatish Balay   } else a->colmap = 0;
35124beb1cfeSHong Zhang 
35130ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ*)(oldmat->B->data))->nbs)) {
3514785e854fSJed Brown     ierr = PetscMalloc1(len,&a->garray);CHKERRQ(ierr);
35153bb1ff40SBarry Smith     ierr = PetscLogObjectMemory((PetscObject)mat,len*sizeof(PetscInt));CHKERRQ(ierr);
3516b24ad042SBarry Smith     ierr = PetscMemcpy(a->garray,oldmat->garray,len*sizeof(PetscInt));CHKERRQ(ierr);
35170ac07820SSatish Balay   } else a->garray = 0;
35180ac07820SSatish Balay 
3519ce94432eSBarry Smith   ierr = MatStashCreate_Private(PetscObjectComm((PetscObject)matin),matin->rmap->bs,&mat->bstash);CHKERRQ(ierr);
35200ac07820SSatish Balay   ierr = VecDuplicate(oldmat->lvec,&a->lvec);CHKERRQ(ierr);
35213bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->lvec);CHKERRQ(ierr);
35220ac07820SSatish Balay   ierr = VecScatterCopy(oldmat->Mvctx,&a->Mvctx);CHKERRQ(ierr);
35233bb1ff40SBarry Smith   ierr = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->Mvctx);CHKERRQ(ierr);
35247fff6886SHong Zhang 
35252e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->A,cpvalues,&a->A);CHKERRQ(ierr);
35263bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->A);CHKERRQ(ierr);
35272e8a6d31SBarry Smith   ierr    = MatDuplicate(oldmat->B,cpvalues,&a->B);CHKERRQ(ierr);
35283bb1ff40SBarry Smith   ierr    = PetscLogObjectParent((PetscObject)mat,(PetscObject)a->B);CHKERRQ(ierr);
3529140e18c1SBarry Smith   ierr    = PetscFunctionListDuplicate(((PetscObject)matin)->qlist,&((PetscObject)mat)->qlist);CHKERRQ(ierr);
35300ac07820SSatish Balay   *newmat = mat;
35313a40ed3dSBarry Smith   PetscFunctionReturn(0);
35320ac07820SSatish Balay }
353357b952d6SSatish Balay 
35344a2ae208SSatish Balay #undef __FUNCT__
35355bba2384SShri Abhyankar #define __FUNCT__ "MatLoad_MPIBAIJ"
3536112444f4SShri Abhyankar PetscErrorCode MatLoad_MPIBAIJ(Mat newmat,PetscViewer viewer)
35374683f7a4SShri Abhyankar {
35384683f7a4SShri Abhyankar   PetscErrorCode ierr;
35394683f7a4SShri Abhyankar   int            fd;
35404683f7a4SShri Abhyankar   PetscInt       i,nz,j,rstart,rend;
35414683f7a4SShri Abhyankar   PetscScalar    *vals,*buf;
3542ce94432eSBarry Smith   MPI_Comm       comm;
35434683f7a4SShri Abhyankar   MPI_Status     status;
35444683f7a4SShri Abhyankar   PetscMPIInt    rank,size,maxnz;
35454683f7a4SShri Abhyankar   PetscInt       header[4],*rowlengths = 0,M,N,m,*rowners,*cols;
35460298fd71SBarry Smith   PetscInt       *locrowlens = NULL,*procsnz = NULL,*browners = NULL;
35473059b6faSBarry Smith   PetscInt       jj,*mycols,*ibuf,bs = newmat->rmap->bs,Mbs,mbs,extra_rows,mmax;
35484683f7a4SShri Abhyankar   PetscMPIInt    tag    = ((PetscObject)viewer)->tag;
35490298fd71SBarry Smith   PetscInt       *dlens = NULL,*odlens = NULL,*mask = NULL,*masked1 = NULL,*masked2 = NULL,rowcount,odcount;
3550461878b2SBarry Smith   PetscInt       dcount,kmax,k,nzcount,tmp,mend;
35514683f7a4SShri Abhyankar 
35524683f7a4SShri Abhyankar   PetscFunctionBegin;
3553c98fd787SBarry Smith   /* force binary viewer to load .info file if it has not yet done so */
3554c98fd787SBarry Smith   ierr = PetscViewerSetUp(viewer);CHKERRQ(ierr);
3555ce94432eSBarry Smith   ierr = PetscObjectGetComm((PetscObject)viewer,&comm);CHKERRQ(ierr);
35560298fd71SBarry Smith   ierr = PetscOptionsBegin(comm,NULL,"Options for loading MPIBAIJ matrix 2","Mat");CHKERRQ(ierr);
35570298fd71SBarry Smith   ierr = PetscOptionsInt("-matload_block_size","Set the blocksize used to store the matrix","MatLoad",bs,&bs,NULL);CHKERRQ(ierr);
35584683f7a4SShri Abhyankar   ierr = PetscOptionsEnd();CHKERRQ(ierr);
35593059b6faSBarry Smith   if (bs < 0) bs = 1;
35604683f7a4SShri Abhyankar 
35614683f7a4SShri Abhyankar   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
35624683f7a4SShri Abhyankar   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
35634683f7a4SShri Abhyankar   ierr = PetscViewerBinaryGetDescriptor(viewer,&fd);CHKERRQ(ierr);
35645872f025SBarry Smith   if (!rank) {
35654683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,(char*)header,4,PETSC_INT);CHKERRQ(ierr);
35664683f7a4SShri Abhyankar     if (header[0] != MAT_FILE_CLASSID) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"not matrix object");
35674683f7a4SShri Abhyankar   }
35684683f7a4SShri Abhyankar   ierr = MPI_Bcast(header+1,3,MPIU_INT,0,comm);CHKERRQ(ierr);
35694683f7a4SShri Abhyankar   M    = header[1]; N = header[2];
35704683f7a4SShri Abhyankar 
35714683f7a4SShri Abhyankar   /* If global sizes are set, check if they are consistent with that given in the file */
3572461878b2SBarry Smith   if (newmat->rmap->N >= 0 && newmat->rmap->N != M) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of rows:Matrix in file has (%D) and input matrix has (%D)",newmat->rmap->N,M);
3573461878b2SBarry Smith   if (newmat->cmap->N >= 0 && newmat->cmap->N != N) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"Inconsistent # of cols:Matrix in file has (%D) and input matrix has (%D)",newmat->cmap->N,N);
35744683f7a4SShri Abhyankar 
3575ce94432eSBarry Smith   if (M != N) SETERRQ(PetscObjectComm((PetscObject)viewer),PETSC_ERR_SUP,"Can only do square matrices");
35764683f7a4SShri Abhyankar 
35774683f7a4SShri Abhyankar   /*
35784683f7a4SShri Abhyankar      This code adds extra rows to make sure the number of rows is
35794683f7a4SShri Abhyankar      divisible by the blocksize
35804683f7a4SShri Abhyankar   */
35814683f7a4SShri Abhyankar   Mbs        = M/bs;
35824683f7a4SShri Abhyankar   extra_rows = bs - M + bs*Mbs;
35834683f7a4SShri Abhyankar   if (extra_rows == bs) extra_rows = 0;
35844683f7a4SShri Abhyankar   else                  Mbs++;
35854683f7a4SShri Abhyankar   if (extra_rows && !rank) {
35864683f7a4SShri Abhyankar     ierr = PetscInfo(viewer,"Padding loaded matrix to match blocksize\n");CHKERRQ(ierr);
35874683f7a4SShri Abhyankar   }
35884683f7a4SShri Abhyankar 
35894683f7a4SShri Abhyankar   /* determine ownership of all rows */
35904683f7a4SShri Abhyankar   if (newmat->rmap->n < 0) { /* PETSC_DECIDE */
35914683f7a4SShri Abhyankar     mbs = Mbs/size + ((Mbs % size) > rank);
35924683f7a4SShri Abhyankar     m   = mbs*bs;
35934683f7a4SShri Abhyankar   } else { /* User set */
35944683f7a4SShri Abhyankar     m   = newmat->rmap->n;
35954683f7a4SShri Abhyankar     mbs = m/bs;
35964683f7a4SShri Abhyankar   }
3597dcca6d9dSJed Brown   ierr = PetscMalloc2(size+1,&rowners,size+1,&browners);CHKERRQ(ierr);
35984683f7a4SShri Abhyankar   ierr = MPI_Allgather(&mbs,1,MPIU_INT,rowners+1,1,MPIU_INT,comm);CHKERRQ(ierr);
35994683f7a4SShri Abhyankar 
36004683f7a4SShri Abhyankar   /* process 0 needs enough room for process with most rows */
36014683f7a4SShri Abhyankar   if (!rank) {
36024683f7a4SShri Abhyankar     mmax = rowners[1];
36031251c579SMatthew G Knepley     for (i=2; i<=size; i++) {
36044683f7a4SShri Abhyankar       mmax = PetscMax(mmax,rowners[i]);
36054683f7a4SShri Abhyankar     }
36064683f7a4SShri Abhyankar     mmax*=bs;
36073964eb88SJed Brown   } else mmax = -1;             /* unused, but compiler warns anyway */
36084683f7a4SShri Abhyankar 
36094683f7a4SShri Abhyankar   rowners[0] = 0;
36104683f7a4SShri Abhyankar   for (i=2; i<=size; i++) rowners[i] += rowners[i-1];
36114683f7a4SShri Abhyankar   for (i=0; i<=size; i++) browners[i] = rowners[i]*bs;
36124683f7a4SShri Abhyankar   rstart = rowners[rank];
36134683f7a4SShri Abhyankar   rend   = rowners[rank+1];
36144683f7a4SShri Abhyankar 
36154683f7a4SShri Abhyankar   /* distribute row lengths to all processors */
3616785e854fSJed Brown   ierr = PetscMalloc1(m,&locrowlens);CHKERRQ(ierr);
36174683f7a4SShri Abhyankar   if (!rank) {
36184683f7a4SShri Abhyankar     mend = m;
36194683f7a4SShri Abhyankar     if (size == 1) mend = mend - extra_rows;
36204683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,locrowlens,mend,PETSC_INT);CHKERRQ(ierr);
36214683f7a4SShri Abhyankar     for (j=mend; j<m; j++) locrowlens[j] = 1;
3622785e854fSJed Brown     ierr = PetscMalloc1(mmax,&rowlengths);CHKERRQ(ierr);
36231795a4d1SJed Brown     ierr = PetscCalloc1(size,&procsnz);CHKERRQ(ierr);
36244683f7a4SShri Abhyankar     for (j=0; j<m; j++) {
36254683f7a4SShri Abhyankar       procsnz[0] += locrowlens[j];
36264683f7a4SShri Abhyankar     }
36274683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
36284683f7a4SShri Abhyankar       mend = browners[i+1] - browners[i];
36294683f7a4SShri Abhyankar       if (i == size-1) mend = mend - extra_rows;
36304683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,rowlengths,mend,PETSC_INT);CHKERRQ(ierr);
36314683f7a4SShri Abhyankar       for (j=mend; j<browners[i+1] - browners[i]; j++) rowlengths[j] = 1;
36324683f7a4SShri Abhyankar       /* calculate the number of nonzeros on each processor */
36334683f7a4SShri Abhyankar       for (j=0; j<browners[i+1]-browners[i]; j++) {
36344683f7a4SShri Abhyankar         procsnz[i] += rowlengths[j];
36354683f7a4SShri Abhyankar       }
36364683f7a4SShri Abhyankar       ierr = MPI_Send(rowlengths,browners[i+1]-browners[i],MPIU_INT,i,tag,comm);CHKERRQ(ierr);
36374683f7a4SShri Abhyankar     }
36384683f7a4SShri Abhyankar     ierr = PetscFree(rowlengths);CHKERRQ(ierr);
36394683f7a4SShri Abhyankar   } else {
36404683f7a4SShri Abhyankar     ierr = MPI_Recv(locrowlens,m,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
36414683f7a4SShri Abhyankar   }
36424683f7a4SShri Abhyankar 
36434683f7a4SShri Abhyankar   if (!rank) {
36444683f7a4SShri Abhyankar     /* determine max buffer needed and allocate it */
36454683f7a4SShri Abhyankar     maxnz = procsnz[0];
36464683f7a4SShri Abhyankar     for (i=1; i<size; i++) {
36474683f7a4SShri Abhyankar       maxnz = PetscMax(maxnz,procsnz[i]);
36484683f7a4SShri Abhyankar     }
3649785e854fSJed Brown     ierr = PetscMalloc1(maxnz,&cols);CHKERRQ(ierr);
36504683f7a4SShri Abhyankar 
36514683f7a4SShri Abhyankar     /* read in my part of the matrix column indices  */
36524683f7a4SShri Abhyankar     nz     = procsnz[0];
3653854ce69bSBarry Smith     ierr   = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr);
36544683f7a4SShri Abhyankar     mycols = ibuf;
36554683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
36564683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,mycols,nz,PETSC_INT);CHKERRQ(ierr);
365726fbe8dcSKarl Rupp     if (size == 1) {
365826fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) mycols[nz+i] = M+i;
365926fbe8dcSKarl Rupp     }
36604683f7a4SShri Abhyankar 
36614683f7a4SShri Abhyankar     /* read in every ones (except the last) and ship off */
36624683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
36634683f7a4SShri Abhyankar       nz   = procsnz[i];
36644683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
36654683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz,MPIU_INT,i,tag,comm);CHKERRQ(ierr);
36664683f7a4SShri Abhyankar     }
36674683f7a4SShri Abhyankar     /* read in the stuff for the last proc */
36684683f7a4SShri Abhyankar     if (size != 1) {
36694683f7a4SShri Abhyankar       nz   = procsnz[size-1] - extra_rows;  /* the extra rows are not on the disk */
36704683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,cols,nz,PETSC_INT);CHKERRQ(ierr);
36714683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) cols[nz+i] = M+i;
36724683f7a4SShri Abhyankar       ierr = MPI_Send(cols,nz+extra_rows,MPIU_INT,size-1,tag,comm);CHKERRQ(ierr);
36734683f7a4SShri Abhyankar     }
36744683f7a4SShri Abhyankar     ierr = PetscFree(cols);CHKERRQ(ierr);
36754683f7a4SShri Abhyankar   } else {
36764683f7a4SShri Abhyankar     /* determine buffer space needed for message */
36774683f7a4SShri Abhyankar     nz = 0;
36784683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
36794683f7a4SShri Abhyankar       nz += locrowlens[i];
36804683f7a4SShri Abhyankar     }
3681854ce69bSBarry Smith     ierr   = PetscMalloc1(nz+1,&ibuf);CHKERRQ(ierr);
36824683f7a4SShri Abhyankar     mycols = ibuf;
36834683f7a4SShri Abhyankar     /* receive message of column indices*/
36844683f7a4SShri Abhyankar     ierr = MPI_Recv(mycols,nz,MPIU_INT,0,tag,comm,&status);CHKERRQ(ierr);
36854683f7a4SShri Abhyankar     ierr = MPI_Get_count(&status,MPIU_INT,&maxnz);CHKERRQ(ierr);
36864683f7a4SShri Abhyankar     if (maxnz != nz) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_FILE_UNEXPECTED,"something is wrong with file");
36874683f7a4SShri Abhyankar   }
36884683f7a4SShri Abhyankar 
36894683f7a4SShri Abhyankar   /* loop over local rows, determining number of off diagonal entries */
3690dcca6d9dSJed Brown   ierr     = PetscMalloc2(rend-rstart,&dlens,rend-rstart,&odlens);CHKERRQ(ierr);
36911795a4d1SJed Brown   ierr     = PetscCalloc3(Mbs,&mask,Mbs,&masked1,Mbs,&masked2);CHKERRQ(ierr);
36924683f7a4SShri Abhyankar   rowcount = 0; nzcount = 0;
36934683f7a4SShri Abhyankar   for (i=0; i<mbs; i++) {
36944683f7a4SShri Abhyankar     dcount  = 0;
36954683f7a4SShri Abhyankar     odcount = 0;
36964683f7a4SShri Abhyankar     for (j=0; j<bs; j++) {
36974683f7a4SShri Abhyankar       kmax = locrowlens[rowcount];
36984683f7a4SShri Abhyankar       for (k=0; k<kmax; k++) {
36994683f7a4SShri Abhyankar         tmp = mycols[nzcount++]/bs;
37004683f7a4SShri Abhyankar         if (!mask[tmp]) {
37014683f7a4SShri Abhyankar           mask[tmp] = 1;
37024683f7a4SShri Abhyankar           if (tmp < rstart || tmp >= rend) masked2[odcount++] = tmp;
37034683f7a4SShri Abhyankar           else masked1[dcount++] = tmp;
37044683f7a4SShri Abhyankar         }
37054683f7a4SShri Abhyankar       }
37064683f7a4SShri Abhyankar       rowcount++;
37074683f7a4SShri Abhyankar     }
37084683f7a4SShri Abhyankar 
37094683f7a4SShri Abhyankar     dlens[i]  = dcount;
37104683f7a4SShri Abhyankar     odlens[i] = odcount;
37114683f7a4SShri Abhyankar 
37124683f7a4SShri Abhyankar     /* zero out the mask elements we set */
37134683f7a4SShri Abhyankar     for (j=0; j<dcount; j++) mask[masked1[j]] = 0;
37144683f7a4SShri Abhyankar     for (j=0; j<odcount; j++) mask[masked2[j]] = 0;
37154683f7a4SShri Abhyankar   }
37164683f7a4SShri Abhyankar 
37174683f7a4SShri Abhyankar   ierr = MatSetSizes(newmat,m,m,M+extra_rows,N+extra_rows);CHKERRQ(ierr);
37184683f7a4SShri Abhyankar   ierr = MatMPIBAIJSetPreallocation(newmat,bs,0,dlens,0,odlens);CHKERRQ(ierr);
37194683f7a4SShri Abhyankar 
37204683f7a4SShri Abhyankar   if (!rank) {
3721854ce69bSBarry Smith     ierr = PetscMalloc1(maxnz+1,&buf);CHKERRQ(ierr);
37224683f7a4SShri Abhyankar     /* read in my part of the matrix numerical values  */
37234683f7a4SShri Abhyankar     nz     = procsnz[0];
37244683f7a4SShri Abhyankar     vals   = buf;
37254683f7a4SShri Abhyankar     mycols = ibuf;
37264683f7a4SShri Abhyankar     if (size == 1) nz -= extra_rows;
37274683f7a4SShri Abhyankar     ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
372826fbe8dcSKarl Rupp     if (size == 1) {
372926fbe8dcSKarl Rupp       for (i=0; i< extra_rows; i++) vals[nz+i] = 1.0;
373026fbe8dcSKarl Rupp     }
37314683f7a4SShri Abhyankar 
37324683f7a4SShri Abhyankar     /* insert into matrix */
37334683f7a4SShri Abhyankar     jj = rstart*bs;
37344683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
37354683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
37364683f7a4SShri Abhyankar       mycols += locrowlens[i];
37374683f7a4SShri Abhyankar       vals   += locrowlens[i];
37384683f7a4SShri Abhyankar       jj++;
37394683f7a4SShri Abhyankar     }
37404683f7a4SShri Abhyankar     /* read in other processors (except the last one) and ship out */
37414683f7a4SShri Abhyankar     for (i=1; i<size-1; i++) {
37424683f7a4SShri Abhyankar       nz   = procsnz[i];
37434683f7a4SShri Abhyankar       vals = buf;
37444683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
3745479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz,MPIU_SCALAR,i,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
37464683f7a4SShri Abhyankar     }
37474683f7a4SShri Abhyankar     /* the last proc */
37484683f7a4SShri Abhyankar     if (size != 1) {
37494683f7a4SShri Abhyankar       nz   = procsnz[i] - extra_rows;
37504683f7a4SShri Abhyankar       vals = buf;
37514683f7a4SShri Abhyankar       ierr = PetscBinaryRead(fd,vals,nz,PETSC_SCALAR);CHKERRQ(ierr);
37524683f7a4SShri Abhyankar       for (i=0; i<extra_rows; i++) vals[nz+i] = 1.0;
3753479e424cSMichael Lange       ierr = MPIULong_Send(vals,nz+extra_rows,MPIU_SCALAR,size-1,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
37544683f7a4SShri Abhyankar     }
37554683f7a4SShri Abhyankar     ierr = PetscFree(procsnz);CHKERRQ(ierr);
37564683f7a4SShri Abhyankar   } else {
37574683f7a4SShri Abhyankar     /* receive numeric values */
3758854ce69bSBarry Smith     ierr = PetscMalloc1(nz+1,&buf);CHKERRQ(ierr);
37594683f7a4SShri Abhyankar 
37604683f7a4SShri Abhyankar     /* receive message of values*/
37614683f7a4SShri Abhyankar     vals   = buf;
37624683f7a4SShri Abhyankar     mycols = ibuf;
3763479e424cSMichael Lange     ierr   = MPIULong_Recv(vals,nz,MPIU_SCALAR,0,((PetscObject)newmat)->tag,comm);CHKERRQ(ierr);
37644683f7a4SShri Abhyankar 
37654683f7a4SShri Abhyankar     /* insert into matrix */
37664683f7a4SShri Abhyankar     jj = rstart*bs;
37674683f7a4SShri Abhyankar     for (i=0; i<m; i++) {
37684683f7a4SShri Abhyankar       ierr    = MatSetValues_MPIBAIJ(newmat,1,&jj,locrowlens[i],mycols,vals,INSERT_VALUES);CHKERRQ(ierr);
37694683f7a4SShri Abhyankar       mycols += locrowlens[i];
37704683f7a4SShri Abhyankar       vals   += locrowlens[i];
37714683f7a4SShri Abhyankar       jj++;
37724683f7a4SShri Abhyankar     }
37734683f7a4SShri Abhyankar   }
37744683f7a4SShri Abhyankar   ierr = PetscFree(locrowlens);CHKERRQ(ierr);
37754683f7a4SShri Abhyankar   ierr = PetscFree(buf);CHKERRQ(ierr);
37764683f7a4SShri Abhyankar   ierr = PetscFree(ibuf);CHKERRQ(ierr);
37774683f7a4SShri Abhyankar   ierr = PetscFree2(rowners,browners);CHKERRQ(ierr);
37784683f7a4SShri Abhyankar   ierr = PetscFree2(dlens,odlens);CHKERRQ(ierr);
37794683f7a4SShri Abhyankar   ierr = PetscFree3(mask,masked1,masked2);CHKERRQ(ierr);
37804683f7a4SShri Abhyankar   ierr = MatAssemblyBegin(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
37814683f7a4SShri Abhyankar   ierr = MatAssemblyEnd(newmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
37824683f7a4SShri Abhyankar   PetscFunctionReturn(0);
37834683f7a4SShri Abhyankar }
37844683f7a4SShri Abhyankar 
37854683f7a4SShri Abhyankar #undef __FUNCT__
37864a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJSetHashTableFactor"
3787133cdb44SSatish Balay /*@
3788133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3789133cdb44SSatish Balay 
3790133cdb44SSatish Balay    Input Parameters:
3791133cdb44SSatish Balay .  mat  - the matrix
3792133cdb44SSatish Balay .  fact - factor
3793133cdb44SSatish Balay 
3794c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3795fee21e36SBarry Smith 
37968c890885SBarry Smith    Level: advanced
37978c890885SBarry Smith 
3798133cdb44SSatish Balay   Notes:
37998c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3800133cdb44SSatish Balay 
3801133cdb44SSatish Balay .keywords: matrix, hashtable, factor, HT
3802133cdb44SSatish Balay 
3803133cdb44SSatish Balay .seealso: MatSetOption()
3804133cdb44SSatish Balay @*/
38057087cfbeSBarry Smith PetscErrorCode  MatMPIBAIJSetHashTableFactor(Mat mat,PetscReal fact)
3806133cdb44SSatish Balay {
38074ac538c5SBarry Smith   PetscErrorCode ierr;
38085bf65638SKris Buschelman 
38095bf65638SKris Buschelman   PetscFunctionBegin;
38104ac538c5SBarry Smith   ierr = PetscTryMethod(mat,"MatSetHashTableFactor_C",(Mat,PetscReal),(mat,fact));CHKERRQ(ierr);
38115bf65638SKris Buschelman   PetscFunctionReturn(0);
38125bf65638SKris Buschelman }
38135bf65638SKris Buschelman 
38145bf65638SKris Buschelman #undef __FUNCT__
38155bf65638SKris Buschelman #define __FUNCT__ "MatSetHashTableFactor_MPIBAIJ"
38167087cfbeSBarry Smith PetscErrorCode  MatSetHashTableFactor_MPIBAIJ(Mat mat,PetscReal fact)
38175bf65638SKris Buschelman {
381825fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3819133cdb44SSatish Balay 
3820133cdb44SSatish Balay   PetscFunctionBegin;
3821133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ*)mat->data;
3822133cdb44SSatish Balay   baij->ht_fact = fact;
3823133cdb44SSatish Balay   PetscFunctionReturn(0);
3824133cdb44SSatish Balay }
3825f2a5309cSSatish Balay 
38264a2ae208SSatish Balay #undef __FUNCT__
38274a2ae208SSatish Balay #define __FUNCT__ "MatMPIBAIJGetSeqBAIJ"
38289230625dSJed Brown PetscErrorCode  MatMPIBAIJGetSeqBAIJ(Mat A,Mat *Ad,Mat *Ao,const PetscInt *colmap[])
3829f2a5309cSSatish Balay {
3830f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ*)A->data;
38315fd66863SKarl Rupp 
3832f2a5309cSSatish Balay   PetscFunctionBegin;
383321e72a00SBarry Smith   if (Ad)     *Ad     = a->A;
383421e72a00SBarry Smith   if (Ao)     *Ao     = a->B;
383521e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3836f2a5309cSSatish Balay   PetscFunctionReturn(0);
3837f2a5309cSSatish Balay }
383885535b8eSBarry Smith 
383985535b8eSBarry Smith /*
384085535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
384185535b8eSBarry Smith */
384285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
384385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
384485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
384585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
384685535b8eSBarry Smith #endif
384785535b8eSBarry Smith 
384885535b8eSBarry Smith #undef __FUNCT__
384985535b8eSBarry Smith #define __FUNCT__ "matmpibiajsetvaluesblocked"
385085535b8eSBarry Smith /*@C
385185535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
385285535b8eSBarry Smith 
385385535b8eSBarry Smith   Collective on Mat
385485535b8eSBarry Smith 
385585535b8eSBarry Smith   Input Parameters:
385685535b8eSBarry Smith + mat - the matrix
385785535b8eSBarry Smith . min - number of input rows
385885535b8eSBarry Smith . im - input rows
385985535b8eSBarry Smith . nin - number of input columns
386085535b8eSBarry Smith . in - input columns
386185535b8eSBarry Smith . v - numerical values input
386285535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
386385535b8eSBarry Smith 
386485535b8eSBarry Smith   Notes: This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
386585535b8eSBarry Smith 
386685535b8eSBarry Smith   Level: advanced
386785535b8eSBarry Smith 
386885535b8eSBarry Smith .seealso:   MatSetValuesBlocked()
386985535b8eSBarry Smith @*/
387085535b8eSBarry Smith PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin,PetscInt *min,const PetscInt im[],PetscInt *nin,const PetscInt in[],const MatScalar v[],InsertMode *addvin)
387185535b8eSBarry Smith {
387285535b8eSBarry Smith   /* convert input arguments to C version */
387385535b8eSBarry Smith   Mat        mat  = *matin;
387485535b8eSBarry Smith   PetscInt   m    = *min, n = *nin;
387585535b8eSBarry Smith   InsertMode addv = *addvin;
387685535b8eSBarry Smith 
387785535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ*)mat->data;
387885535b8eSBarry Smith   const MatScalar *value;
387985535b8eSBarry Smith   MatScalar       *barray     = baij->barray;
3880ace3abfcSBarry Smith   PetscBool       roworiented = baij->roworiented;
388185535b8eSBarry Smith   PetscErrorCode  ierr;
388285535b8eSBarry Smith   PetscInt        i,j,ii,jj,row,col,rstart=baij->rstartbs;
388385535b8eSBarry Smith   PetscInt        rend=baij->rendbs,cstart=baij->cstartbs,stepval;
3884d0f46423SBarry Smith   PetscInt        cend=baij->cendbs,bs=mat->rmap->bs,bs2=baij->bs2;
388585535b8eSBarry Smith 
388685535b8eSBarry Smith   PetscFunctionBegin;
388785535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
388826fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
388985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3890e7e72b3dSBarry Smith   else if (mat->insertmode != addv) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Cannot mix add values and insert values");
3891e32f2f54SBarry Smith   if (mat->factortype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Not for factored matrix");
389285535b8eSBarry Smith #endif
389385535b8eSBarry Smith   if (mat->assembled) {
389485535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
389585535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
389685535b8eSBarry Smith   }
389785535b8eSBarry Smith   ierr = PetscLogEventBegin(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
389885535b8eSBarry Smith 
389985535b8eSBarry Smith 
390085535b8eSBarry Smith   if (!barray) {
3901785e854fSJed Brown     ierr         = PetscMalloc1(bs2,&barray);CHKERRQ(ierr);
390285535b8eSBarry Smith     baij->barray = barray;
390385535b8eSBarry Smith   }
390485535b8eSBarry Smith 
390526fbe8dcSKarl Rupp   if (roworiented) stepval = (n-1)*bs;
390626fbe8dcSKarl Rupp   else stepval = (m-1)*bs;
390726fbe8dcSKarl Rupp 
390885535b8eSBarry Smith   for (i=0; i<m; i++) {
390985535b8eSBarry Smith     if (im[i] < 0) continue;
391085535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3911e32f2f54SBarry Smith     if (im[i] >= baij->Mbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Row too large, row %D max %D",im[i],baij->Mbs-1);
391285535b8eSBarry Smith #endif
391385535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
391485535b8eSBarry Smith       row = im[i] - rstart;
391585535b8eSBarry Smith       for (j=0; j<n; j++) {
391685535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
391785535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
391885535b8eSBarry Smith           barray = (MatScalar*)v + i*bs2;
391985535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
392085535b8eSBarry Smith           barray = (MatScalar*)v + j*bs2;
392185535b8eSBarry Smith         } else { /* Here a copy is required */
392285535b8eSBarry Smith           if (roworiented) {
392385535b8eSBarry Smith             value = v + i*(stepval+bs)*bs + j*bs;
392485535b8eSBarry Smith           } else {
392585535b8eSBarry Smith             value = v + j*(stepval+bs)*bs + i*bs;
392685535b8eSBarry Smith           }
392785535b8eSBarry Smith           for (ii=0; ii<bs; ii++,value+=stepval) {
392885535b8eSBarry Smith             for (jj=0; jj<bs; jj++) {
392985535b8eSBarry Smith               *barray++ = *value++;
393085535b8eSBarry Smith             }
393185535b8eSBarry Smith           }
393285535b8eSBarry Smith           barray -=bs2;
393385535b8eSBarry Smith         }
393485535b8eSBarry Smith 
393585535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
393685535b8eSBarry Smith           col  = in[j] - cstart;
39378ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
393826fbe8dcSKarl Rupp         } else if (in[j] < 0) continue;
393985535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
3940cb9801acSJed Brown         else if (in[j] >= baij->Nbs) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Column too large, col %D max %D",in[j],baij->Nbs-1);
394185535b8eSBarry Smith #endif
394285535b8eSBarry Smith         else {
394385535b8eSBarry Smith           if (mat->was_assembled) {
394485535b8eSBarry Smith             if (!baij->colmap) {
3945ab9863d7SBarry Smith               ierr = MatCreateColmap_MPIBAIJ_Private(mat);CHKERRQ(ierr);
394685535b8eSBarry Smith             }
394785535b8eSBarry Smith 
394885535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
394985535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
395085535b8eSBarry Smith             { PetscInt data;
395185535b8eSBarry Smith               ierr = PetscTableFind(baij->colmap,in[j]+1,&data);CHKERRQ(ierr);
3952e32f2f54SBarry Smith               if ((data - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
395385535b8eSBarry Smith             }
395485535b8eSBarry Smith #else
3955e32f2f54SBarry Smith             if ((baij->colmap[in[j]] - 1) % bs) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect colmap");
395685535b8eSBarry Smith #endif
395785535b8eSBarry Smith #endif
395885535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
395985535b8eSBarry Smith             ierr = PetscTableFind(baij->colmap,in[j]+1,&col);CHKERRQ(ierr);
396085535b8eSBarry Smith             col  = (col - 1)/bs;
396185535b8eSBarry Smith #else
396285535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1)/bs;
396385535b8eSBarry Smith #endif
396485535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ*)(baij->A->data))->nonew) {
3965ab9863d7SBarry Smith               ierr = MatDisAssemble_MPIBAIJ(mat);CHKERRQ(ierr);
396685535b8eSBarry Smith               col  =  in[j];
396785535b8eSBarry Smith             }
396826fbe8dcSKarl Rupp           } else col = in[j];
39698ab52850SBarry Smith           ierr = MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B,row,col,barray,addv,im[i],in[j]);CHKERRQ(ierr);
397085535b8eSBarry Smith         }
397185535b8eSBarry Smith       }
397285535b8eSBarry Smith     } else {
397385535b8eSBarry Smith       if (!baij->donotstash) {
397485535b8eSBarry Smith         if (roworiented) {
397585535b8eSBarry Smith           ierr = MatStashValuesRowBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
397685535b8eSBarry Smith         } else {
397785535b8eSBarry Smith           ierr = MatStashValuesColBlocked_Private(&mat->bstash,im[i],n,in,v,m,n,i);CHKERRQ(ierr);
397885535b8eSBarry Smith         }
397985535b8eSBarry Smith       }
398085535b8eSBarry Smith     }
398185535b8eSBarry Smith   }
398285535b8eSBarry Smith 
398385535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
398485535b8eSBarry Smith   ierr = PetscLogEventEnd(MAT_SetValues,mat,0,0,0);CHKERRQ(ierr);
398585535b8eSBarry Smith   PetscFunctionReturn(0);
398685535b8eSBarry Smith }
3987dfb205c3SBarry Smith 
3988dfb205c3SBarry Smith #undef __FUNCT__
3989dfb205c3SBarry Smith #define __FUNCT__ "MatCreateMPIBAIJWithArrays"
3990dfb205c3SBarry Smith /*@
3991dfb205c3SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard
3992dfb205c3SBarry Smith          CSR format the local rows.
3993dfb205c3SBarry Smith 
3994dfb205c3SBarry Smith    Collective on MPI_Comm
3995dfb205c3SBarry Smith 
3996dfb205c3SBarry Smith    Input Parameters:
3997dfb205c3SBarry Smith +  comm - MPI communicator
3998dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3999dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
4000dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
4001dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
4002dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
4003dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
4004dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
4005dfb205c3SBarry Smith .   i - row indices
4006dfb205c3SBarry Smith .   j - column indices
4007dfb205c3SBarry Smith -   a - matrix values
4008dfb205c3SBarry Smith 
4009dfb205c3SBarry Smith    Output Parameter:
4010dfb205c3SBarry Smith .   mat - the matrix
4011dfb205c3SBarry Smith 
4012dfb205c3SBarry Smith    Level: intermediate
4013dfb205c3SBarry Smith 
4014dfb205c3SBarry Smith    Notes:
4015dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
4016dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
4017dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
4018dfb205c3SBarry Smith 
40193adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
40203adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
40213adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
40223adadaf3SJed Brown      with column-major ordering within blocks.
40233adadaf3SJed Brown 
4024dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
4025dfb205c3SBarry Smith 
4026dfb205c3SBarry Smith .keywords: matrix, aij, compressed row, sparse, parallel
4027dfb205c3SBarry Smith 
4028dfb205c3SBarry Smith .seealso: MatCreate(), MatCreateSeqAIJ(), MatSetValues(), MatMPIAIJSetPreallocation(), MatMPIAIJSetPreallocationCSR(),
402969b1f4b7SBarry Smith           MPIAIJ, MatCreateAIJ(), MatCreateMPIAIJWithSplitArrays()
4030dfb205c3SBarry Smith @*/
40317087cfbeSBarry Smith PetscErrorCode  MatCreateMPIBAIJWithArrays(MPI_Comm comm,PetscInt bs,PetscInt m,PetscInt n,PetscInt M,PetscInt N,const PetscInt i[],const PetscInt j[],const PetscScalar a[],Mat *mat)
4032dfb205c3SBarry Smith {
4033dfb205c3SBarry Smith   PetscErrorCode ierr;
4034dfb205c3SBarry Smith 
4035dfb205c3SBarry Smith   PetscFunctionBegin;
4036f23aa3ddSBarry Smith   if (i[0]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"i (row indices) must start with 0");
4037dfb205c3SBarry Smith   if (m < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"local number of rows (m) cannot be PETSC_DECIDE, or negative");
4038dfb205c3SBarry Smith   ierr = MatCreate(comm,mat);CHKERRQ(ierr);
4039dfb205c3SBarry Smith   ierr = MatSetSizes(*mat,m,n,M,N);CHKERRQ(ierr);
4040dfb205c3SBarry Smith   ierr = MatSetType(*mat,MATMPISBAIJ);CHKERRQ(ierr);
4041d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_FALSE);CHKERRQ(ierr);
4042dfb205c3SBarry Smith   ierr = MatMPIBAIJSetPreallocationCSR(*mat,bs,i,j,a);CHKERRQ(ierr);
4043d47bf9aaSJed Brown   ierr = MatSetOption(*mat,MAT_ROW_ORIENTED,PETSC_TRUE);CHKERRQ(ierr);
4044dfb205c3SBarry Smith   PetscFunctionReturn(0);
4045dfb205c3SBarry Smith }
4046e561ad89SHong Zhang 
4047e561ad89SHong Zhang #undef __FUNCT__
4048bd153df0SHong Zhang #define __FUNCT__ "MatCreateMPIMatConcatenateSeqMat_MPIBAIJ"
4049bd153df0SHong Zhang PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm,Mat inmat,PetscInt n,MatReuse scall,Mat *outmat)
4050e561ad89SHong Zhang {
4051e561ad89SHong Zhang   PetscErrorCode ierr;
4052bd153df0SHong Zhang   PetscInt       m,N,i,rstart,nnz,Ii,bs,cbs;
4053bd153df0SHong Zhang   PetscInt       *indx;
4054bd153df0SHong Zhang   PetscScalar    *values;
4055e561ad89SHong Zhang 
4056e561ad89SHong Zhang   PetscFunctionBegin;
4057e561ad89SHong Zhang   ierr = MatGetSize(inmat,&m,&N);CHKERRQ(ierr);
4058bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
4059bd153df0SHong Zhang     Mat_SeqBAIJ    *a = (Mat_SeqBAIJ*)inmat->data;
4060bd153df0SHong Zhang     PetscInt       *dnz,*onz,sum,mbs,Nbs;
4061bd153df0SHong Zhang     PetscInt       *bindx,rmax=a->rmax,j;
4062e561ad89SHong Zhang 
4063bd153df0SHong Zhang     ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
4064bd153df0SHong Zhang     mbs = m/bs; Nbs = N/cbs;
4065bd153df0SHong Zhang     if (n == PETSC_DECIDE) {
4066bd153df0SHong Zhang       ierr = PetscSplitOwnership(comm,&n,&Nbs);CHKERRQ(ierr);
4067bd153df0SHong Zhang     }
4068bd153df0SHong Zhang     /* Check sum(n) = Nbs */
4069b2566f29SBarry Smith     ierr = MPIU_Allreduce(&n,&sum,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
4070bd153df0SHong Zhang     if (sum != Nbs) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Sum of local columns != global columns %d",Nbs);
4071bd153df0SHong Zhang 
4072bd153df0SHong Zhang     ierr    = MPI_Scan(&mbs, &rstart,1,MPIU_INT,MPI_SUM,comm);CHKERRQ(ierr);
4073bd153df0SHong Zhang     rstart -= mbs;
4074e561ad89SHong Zhang 
4075647a6520SHong Zhang     ierr = PetscMalloc1(rmax,&bindx);CHKERRQ(ierr);
4076bd153df0SHong Zhang     ierr = MatPreallocateInitialize(comm,mbs,n,dnz,onz);CHKERRQ(ierr);
4077bd153df0SHong Zhang     for (i=0; i<mbs; i++) {
4078647a6520SHong Zhang       ierr = MatGetRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr); /* non-blocked nnz and indx */
4079647a6520SHong Zhang       nnz = nnz/bs;
4080647a6520SHong Zhang       for (j=0; j<nnz; j++) bindx[j] = indx[j*bs]/bs;
4081647a6520SHong Zhang       ierr = MatPreallocateSet(i+rstart,nnz,bindx,dnz,onz);CHKERRQ(ierr);
4082647a6520SHong Zhang       ierr = MatRestoreRow_SeqBAIJ(inmat,i*bs,&nnz,&indx,NULL);CHKERRQ(ierr);
4083e561ad89SHong Zhang     }
4084647a6520SHong Zhang     ierr = PetscFree(bindx);CHKERRQ(ierr);
4085e561ad89SHong Zhang 
4086e561ad89SHong Zhang     ierr = MatCreate(comm,outmat);CHKERRQ(ierr);
4087bd153df0SHong Zhang     ierr = MatSetSizes(*outmat,m,n*bs,PETSC_DETERMINE,PETSC_DETERMINE);CHKERRQ(ierr);
4088e561ad89SHong Zhang     ierr = MatSetBlockSizes(*outmat,bs,cbs);CHKERRQ(ierr);
4089e561ad89SHong Zhang     ierr = MatSetType(*outmat,MATMPIBAIJ);CHKERRQ(ierr);
4090e561ad89SHong Zhang     ierr = MatMPIBAIJSetPreallocation(*outmat,bs,0,dnz,0,onz);CHKERRQ(ierr);
4091e561ad89SHong Zhang     ierr = MatPreallocateFinalize(dnz,onz);CHKERRQ(ierr);
4092e561ad89SHong Zhang   }
4093e561ad89SHong Zhang 
4094bd153df0SHong Zhang   /* numeric phase */
4095647a6520SHong Zhang   ierr = MatGetBlockSizes(inmat,&bs,&cbs);CHKERRQ(ierr);
4096bd153df0SHong Zhang   ierr = MatGetOwnershipRange(*outmat,&rstart,NULL);CHKERRQ(ierr);
4097e561ad89SHong Zhang 
4098e561ad89SHong Zhang   for (i=0; i<m; i++) {
4099e561ad89SHong Zhang     ierr = MatGetRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
4100e561ad89SHong Zhang     Ii   = i + rstart;
4101bd153df0SHong Zhang     ierr = MatSetValues(*outmat,1,&Ii,nnz,indx,values,INSERT_VALUES);CHKERRQ(ierr);
4102e561ad89SHong Zhang     ierr = MatRestoreRow_SeqBAIJ(inmat,i,&nnz,&indx,&values);CHKERRQ(ierr);
4103e561ad89SHong Zhang   }
4104bd153df0SHong Zhang   ierr = MatAssemblyBegin(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4105bd153df0SHong Zhang   ierr = MatAssemblyEnd(*outmat,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
4106e561ad89SHong Zhang   PetscFunctionReturn(0);
4107e561ad89SHong Zhang }
4108