xref: /petsc/src/mat/impls/baij/mpi/mpibaij.c (revision 48a46eb9bd028bec07ec0f396b1a3abb43f14558)
1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I  "petscmat.h"  I*/
2c5d9258eSSatish Balay 
3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h>
4c6db04a5SJed Brown #include <petscblaslapack.h>
565a92638SMatthew G. Knepley #include <petscsf.h>
679bdfe76SSatish Balay 
77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *);
97ea3e4caSstefano_zampini #endif
107ea3e4caSstefano_zampini 
119371c9d4SSatish Balay PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) {
127843d17aSBarry Smith   Mat_MPIBAIJ       *a = (Mat_MPIBAIJ *)A->data;
134e879edeSHong Zhang   PetscInt           i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs;
144e879edeSHong Zhang   PetscScalar       *va, *vv;
154e879edeSHong Zhang   Vec                vB, vA;
164e879edeSHong Zhang   const PetscScalar *vb;
177843d17aSBarry Smith 
187843d17aSBarry Smith   PetscFunctionBegin;
199566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA));
209566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->A, vA, idx));
214e879edeSHong Zhang 
229566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(vA, &va));
23985db425SBarry Smith   if (idx) {
244e879edeSHong Zhang     for (i = 0; i < m; i++) {
2526fbe8dcSKarl Rupp       if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart;
2626fbe8dcSKarl Rupp     }
27985db425SBarry Smith   }
287843d17aSBarry Smith 
299566063dSJacob Faibussowitsch   PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB));
309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &idxb));
319566063dSJacob Faibussowitsch   PetscCall(MatGetRowMaxAbs(a->B, vB, idxb));
327843d17aSBarry Smith 
339566063dSJacob Faibussowitsch   PetscCall(VecGetArrayWrite(v, &vv));
349566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(vB, &vb));
354e879edeSHong Zhang   for (i = 0; i < m; i++) {
3626fbe8dcSKarl Rupp     if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) {
374e879edeSHong Zhang       vv[i] = vb[i];
384e879edeSHong Zhang       if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
394e879edeSHong Zhang     } else {
404e879edeSHong Zhang       vv[i] = va[i];
419371c9d4SSatish Balay       if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs);
4226fbe8dcSKarl Rupp     }
437843d17aSBarry Smith   }
449566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &vv));
459566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayWrite(vA, &va));
469566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(vB, &vb));
479566063dSJacob Faibussowitsch   PetscCall(PetscFree(idxb));
489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vA));
499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&vB));
507843d17aSBarry Smith   PetscFunctionReturn(0);
517843d17aSBarry Smith }
527843d17aSBarry Smith 
539371c9d4SSatish Balay PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) {
547fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
557fc3c18eSBarry Smith 
567fc3c18eSBarry Smith   PetscFunctionBegin;
579566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->A));
589566063dSJacob Faibussowitsch   PetscCall(MatStoreValues(aij->B));
597fc3c18eSBarry Smith   PetscFunctionReturn(0);
607fc3c18eSBarry Smith }
617fc3c18eSBarry Smith 
629371c9d4SSatish Balay PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) {
637fc3c18eSBarry Smith   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data;
647fc3c18eSBarry Smith 
657fc3c18eSBarry Smith   PetscFunctionBegin;
669566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->A));
679566063dSJacob Faibussowitsch   PetscCall(MatRetrieveValues(aij->B));
687fc3c18eSBarry Smith   PetscFunctionReturn(0);
697fc3c18eSBarry Smith }
707fc3c18eSBarry Smith 
71537820f0SBarry Smith /*
72537820f0SBarry Smith      Local utility routine that creates a mapping from the global column
7357b952d6SSatish Balay    number to the local number in the off-diagonal part of the local
74e06f6af7SJed Brown    storage of the matrix.  This is done in a non scalable way since the
7557b952d6SSatish Balay    length of colmap equals the global matrix length.
7657b952d6SSatish Balay */
779371c9d4SSatish Balay PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) {
7857b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
7957b952d6SSatish Balay   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
80d0f46423SBarry Smith   PetscInt     nbs = B->nbs, i, bs = mat->rmap->bs;
8157b952d6SSatish Balay 
82d64ed03dSBarry Smith   PetscFunctionBegin;
83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
849566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(baij->nbs, baij->Nbs + 1, &baij->colmap));
85*48a46eb9SPierre Jolivet   for (i = 0; i < nbs; i++) PetscCall(PetscTableAdd(baij->colmap, baij->garray[i] + 1, i * bs + 1, INSERT_VALUES));
8648e59246SSatish Balay #else
879566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap));
889566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectMemory((PetscObject)mat, baij->Nbs * sizeof(PetscInt)));
89928fc39bSSatish Balay   for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1;
9048e59246SSatish Balay #endif
913a40ed3dSBarry Smith   PetscFunctionReturn(0);
9257b952d6SSatish Balay }
9357b952d6SSatish Balay 
94d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \
9580c1aa95SSatish Balay   { \
9680c1aa95SSatish Balay     brow = row / bs; \
979371c9d4SSatish Balay     rp   = aj + ai[brow]; \
989371c9d4SSatish Balay     ap   = aa + bs2 * ai[brow]; \
999371c9d4SSatish Balay     rmax = aimax[brow]; \
1009371c9d4SSatish Balay     nrow = ailen[brow]; \
10180c1aa95SSatish Balay     bcol = col / bs; \
1029371c9d4SSatish Balay     ridx = row % bs; \
1039371c9d4SSatish Balay     cidx = col % bs; \
1049371c9d4SSatish Balay     low  = 0; \
1059371c9d4SSatish Balay     high = nrow; \
106ab26458aSBarry Smith     while (high - low > 3) { \
107ab26458aSBarry Smith       t = (low + high) / 2; \
108ab26458aSBarry Smith       if (rp[t] > bcol) high = t; \
109ab26458aSBarry Smith       else low = t; \
110ab26458aSBarry Smith     } \
111ab26458aSBarry Smith     for (_i = low; _i < high; _i++) { \
11280c1aa95SSatish Balay       if (rp[_i] > bcol) break; \
11380c1aa95SSatish Balay       if (rp[_i] == bcol) { \
11480c1aa95SSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
115eada6651SSatish Balay         if (addv == ADD_VALUES) *bap += value; \
116eada6651SSatish Balay         else *bap = value; \
117ac7a638eSSatish Balay         goto a_noinsert; \
11880c1aa95SSatish Balay       } \
11980c1aa95SSatish Balay     } \
12089280ab3SLois Curfman McInnes     if (a->nonew == 1) goto a_noinsert; \
1215f80ce2aSJacob Faibussowitsch     PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
122fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \
12380c1aa95SSatish Balay     N = nrow++ - 1; \
12480c1aa95SSatish Balay     /* shift up all the later entries in this row */ \
1259566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1269566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1279566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
12880c1aa95SSatish Balay     rp[_i]                          = bcol; \
12980c1aa95SSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
130ac7a638eSSatish Balay   a_noinsert:; \
13180c1aa95SSatish Balay     ailen[brow] = nrow; \
13280c1aa95SSatish Balay   }
13357b952d6SSatish Balay 
134d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \
135ac7a638eSSatish Balay   { \
136ac7a638eSSatish Balay     brow = row / bs; \
1379371c9d4SSatish Balay     rp   = bj + bi[brow]; \
1389371c9d4SSatish Balay     ap   = ba + bs2 * bi[brow]; \
1399371c9d4SSatish Balay     rmax = bimax[brow]; \
1409371c9d4SSatish Balay     nrow = bilen[brow]; \
141ac7a638eSSatish Balay     bcol = col / bs; \
1429371c9d4SSatish Balay     ridx = row % bs; \
1439371c9d4SSatish Balay     cidx = col % bs; \
1449371c9d4SSatish Balay     low  = 0; \
1459371c9d4SSatish Balay     high = nrow; \
146ac7a638eSSatish Balay     while (high - low > 3) { \
147ac7a638eSSatish Balay       t = (low + high) / 2; \
148ac7a638eSSatish Balay       if (rp[t] > bcol) high = t; \
149ac7a638eSSatish Balay       else low = t; \
150ac7a638eSSatish Balay     } \
151ac7a638eSSatish Balay     for (_i = low; _i < high; _i++) { \
152ac7a638eSSatish Balay       if (rp[_i] > bcol) break; \
153ac7a638eSSatish Balay       if (rp[_i] == bcol) { \
154ac7a638eSSatish Balay         bap = ap + bs2 * _i + bs * cidx + ridx; \
155ac7a638eSSatish Balay         if (addv == ADD_VALUES) *bap += value; \
156ac7a638eSSatish Balay         else *bap = value; \
157ac7a638eSSatish Balay         goto b_noinsert; \
158ac7a638eSSatish Balay       } \
159ac7a638eSSatish Balay     } \
16089280ab3SLois Curfman McInnes     if (b->nonew == 1) goto b_noinsert; \
1615f80ce2aSJacob Faibussowitsch     PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column  (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \
162fef13f97SBarry Smith     MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \
163ac7a638eSSatish Balay     N = nrow++ - 1; \
164ac7a638eSSatish Balay     /* shift up all the later entries in this row */ \
1659566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \
1669566063dSJacob Faibussowitsch     PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \
1679566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \
168ac7a638eSSatish Balay     rp[_i]                          = bcol; \
169ac7a638eSSatish Balay     ap[bs2 * _i + bs * cidx + ridx] = value; \
170ac7a638eSSatish Balay   b_noinsert:; \
171ac7a638eSSatish Balay     bilen[brow] = nrow; \
172ac7a638eSSatish Balay   }
173ac7a638eSSatish Balay 
1749371c9d4SSatish Balay PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) {
17557b952d6SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
17693fea6afSBarry Smith   MatScalar    value;
177ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
178b24ad042SBarry Smith   PetscInt     i, j, row, col;
179d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
180d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart;
181d0f46423SBarry Smith   PetscInt     cend_orig = mat->cmap->rend, bs = mat->rmap->bs;
18257b952d6SSatish Balay 
183eada6651SSatish Balay   /* Some Variables required in the macro */
18480c1aa95SSatish Balay   Mat          A     = baij->A;
18580c1aa95SSatish Balay   Mat_SeqBAIJ *a     = (Mat_SeqBAIJ *)(A)->data;
186b24ad042SBarry Smith   PetscInt    *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j;
1873eda8832SBarry Smith   MatScalar   *aa = a->a;
188ac7a638eSSatish Balay 
189ac7a638eSSatish Balay   Mat          B     = baij->B;
190ac7a638eSSatish Balay   Mat_SeqBAIJ *b     = (Mat_SeqBAIJ *)(B)->data;
191b24ad042SBarry Smith   PetscInt    *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j;
1923eda8832SBarry Smith   MatScalar   *ba = b->a;
193ac7a638eSSatish Balay 
194b24ad042SBarry Smith   PetscInt  *rp, ii, nrow, _i, rmax, N, brow, bcol;
195b24ad042SBarry Smith   PetscInt   low, high, t, ridx, cidx, bs2 = a->bs2;
1963eda8832SBarry Smith   MatScalar *ap, *bap;
19780c1aa95SSatish Balay 
198d64ed03dSBarry Smith   PetscFunctionBegin;
19957b952d6SSatish Balay   for (i = 0; i < m; i++) {
2005ef9f2a5SBarry Smith     if (im[i] < 0) continue;
2015f80ce2aSJacob Faibussowitsch     PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
20257b952d6SSatish Balay     if (im[i] >= rstart_orig && im[i] < rend_orig) {
20357b952d6SSatish Balay       row = im[i] - rstart_orig;
20457b952d6SSatish Balay       for (j = 0; j < n; j++) {
20557b952d6SSatish Balay         if (in[j] >= cstart_orig && in[j] < cend_orig) {
20657b952d6SSatish Balay           col = in[j] - cstart_orig;
207db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
208db4deed7SKarl Rupp           else value = v[i + j * m];
209d40312a9SBarry Smith           MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]);
210f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
211f7d195e4SLawrence Mitchell           continue;
212f7d195e4SLawrence Mitchell         } else {
213f7d195e4SLawrence Mitchell           PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1);
21457b952d6SSatish Balay           if (mat->was_assembled) {
215*48a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
216aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
2179566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap, in[j] / bs + 1, &col));
218bba1ac68SSatish Balay             col = col - 1;
21948e59246SSatish Balay #else
220bba1ac68SSatish Balay             col = baij->colmap[in[j] / bs] - 1;
22148e59246SSatish Balay #endif
222c9ef50b2SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
2239566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
2248295de27SSatish Balay               col   = in[j];
2259bf004c3SSatish Balay               /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */
2269bf004c3SSatish Balay               B     = baij->B;
2279bf004c3SSatish Balay               b     = (Mat_SeqBAIJ *)(B)->data;
2289371c9d4SSatish Balay               bimax = b->imax;
2299371c9d4SSatish Balay               bi    = b->i;
2309371c9d4SSatish Balay               bilen = b->ilen;
2319371c9d4SSatish Balay               bj    = b->j;
2329bf004c3SSatish Balay               ba    = b->a;
233f7d195e4SLawrence Mitchell             } else {
234f7d195e4SLawrence Mitchell               PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
235f7d195e4SLawrence Mitchell               col += in[j] % bs;
236f7d195e4SLawrence Mitchell             }
2378295de27SSatish Balay           } else col = in[j];
238db4deed7SKarl Rupp           if (roworiented) value = v[i * n + j];
239db4deed7SKarl Rupp           else value = v[i + j * m];
240d40312a9SBarry Smith           MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]);
2419566063dSJacob Faibussowitsch           /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */
24257b952d6SSatish Balay         }
24357b952d6SSatish Balay       }
244d64ed03dSBarry Smith     } else {
2455f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
24690f02eecSBarry Smith       if (!baij->donotstash) {
2475080c13bSMatthew G Knepley         mat->assembled = PETSC_FALSE;
248ff2fd236SBarry Smith         if (roworiented) {
2499566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
250ff2fd236SBarry Smith         } else {
2519566063dSJacob Faibussowitsch           PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
25257b952d6SSatish Balay         }
25357b952d6SSatish Balay       }
25457b952d6SSatish Balay     }
25590f02eecSBarry Smith   }
2563a40ed3dSBarry Smith   PetscFunctionReturn(0);
25757b952d6SSatish Balay }
25857b952d6SSatish Balay 
2599371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) {
260880c6e6aSBarry Smith   Mat_SeqBAIJ       *a = (Mat_SeqBAIJ *)A->data;
2618ab52850SBarry Smith   PetscInt          *rp, low, high, t, ii, jj, nrow, i, rmax, N;
262880c6e6aSBarry Smith   PetscInt          *imax = a->imax, *ai = a->i, *ailen = a->ilen;
2638ab52850SBarry Smith   PetscInt          *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs;
264880c6e6aSBarry Smith   PetscBool          roworiented = a->roworiented;
265880c6e6aSBarry Smith   const PetscScalar *value       = v;
266880c6e6aSBarry Smith   MatScalar         *ap, *aa = a->a, *bap;
267880c6e6aSBarry Smith 
268880c6e6aSBarry Smith   PetscFunctionBegin;
269880c6e6aSBarry Smith   rp    = aj + ai[row];
270880c6e6aSBarry Smith   ap    = aa + bs2 * ai[row];
271880c6e6aSBarry Smith   rmax  = imax[row];
272880c6e6aSBarry Smith   nrow  = ailen[row];
2738ab52850SBarry Smith   value = v;
2748ab52850SBarry Smith   low   = 0;
2758ab52850SBarry Smith   high  = nrow;
276880c6e6aSBarry Smith   while (high - low > 7) {
277880c6e6aSBarry Smith     t = (low + high) / 2;
278880c6e6aSBarry Smith     if (rp[t] > col) high = t;
279880c6e6aSBarry Smith     else low = t;
280880c6e6aSBarry Smith   }
281880c6e6aSBarry Smith   for (i = low; i < high; i++) {
282880c6e6aSBarry Smith     if (rp[i] > col) break;
283880c6e6aSBarry Smith     if (rp[i] == col) {
284880c6e6aSBarry Smith       bap = ap + bs2 * i;
285880c6e6aSBarry Smith       if (roworiented) {
286880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2878ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
2889371c9d4SSatish Balay             for (jj = ii; jj < bs2; jj += bs) { bap[jj] += *value++; }
289880c6e6aSBarry Smith           }
290880c6e6aSBarry Smith         } else {
2918ab52850SBarry Smith           for (ii = 0; ii < bs; ii++) {
2929371c9d4SSatish Balay             for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; }
293880c6e6aSBarry Smith           }
294880c6e6aSBarry Smith         }
295880c6e6aSBarry Smith       } else {
296880c6e6aSBarry Smith         if (is == ADD_VALUES) {
2978ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
2989371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { bap[jj] += value[jj]; }
299880c6e6aSBarry Smith             bap += bs;
300880c6e6aSBarry Smith           }
301880c6e6aSBarry Smith         } else {
3028ab52850SBarry Smith           for (ii = 0; ii < bs; ii++, value += bs) {
3039371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { bap[jj] = value[jj]; }
304880c6e6aSBarry Smith             bap += bs;
305880c6e6aSBarry Smith           }
306880c6e6aSBarry Smith         }
307880c6e6aSBarry Smith       }
308880c6e6aSBarry Smith       goto noinsert2;
309880c6e6aSBarry Smith     }
310880c6e6aSBarry Smith   }
311880c6e6aSBarry Smith   if (nonew == 1) goto noinsert2;
3125f80ce2aSJacob Faibussowitsch   PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol);
313880c6e6aSBarry Smith   MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar);
3149371c9d4SSatish Balay   N = nrow++ - 1;
3159371c9d4SSatish Balay   high++;
316880c6e6aSBarry Smith   /* shift up all the later entries in this row */
3179566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1));
3189566063dSJacob Faibussowitsch   PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1)));
319880c6e6aSBarry Smith   rp[i] = col;
320880c6e6aSBarry Smith   bap   = ap + bs2 * i;
321880c6e6aSBarry Smith   if (roworiented) {
3228ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
3239371c9d4SSatish Balay       for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; }
324880c6e6aSBarry Smith     }
325880c6e6aSBarry Smith   } else {
3268ab52850SBarry Smith     for (ii = 0; ii < bs; ii++) {
3279371c9d4SSatish Balay       for (jj = 0; jj < bs; jj++) { *bap++ = *value++; }
328880c6e6aSBarry Smith     }
329880c6e6aSBarry Smith   }
330880c6e6aSBarry Smith noinsert2:;
331880c6e6aSBarry Smith   ailen[row] = nrow;
332880c6e6aSBarry Smith   PetscFunctionReturn(0);
333880c6e6aSBarry Smith }
334880c6e6aSBarry Smith 
3358ab52850SBarry Smith /*
3368ab52850SBarry Smith     This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed
3378ab52850SBarry Smith     by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine
3388ab52850SBarry Smith */
3399371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) {
340ab26458aSBarry Smith   Mat_MPIBAIJ       *baij = (Mat_MPIBAIJ *)mat->data;
341dd6ea824SBarry Smith   const PetscScalar *value;
342f15d580aSBarry Smith   MatScalar         *barray      = baij->barray;
343ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
344899cda47SBarry Smith   PetscInt           i, j, ii, jj, row, col, rstart = baij->rstartbs;
345899cda47SBarry Smith   PetscInt           rend = baij->rendbs, cstart = baij->cstartbs, stepval;
346d0f46423SBarry Smith   PetscInt           cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
347ab26458aSBarry Smith 
348b16ae2b1SBarry Smith   PetscFunctionBegin;
34930793edcSSatish Balay   if (!barray) {
3509566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
35182502324SSatish Balay     baij->barray = barray;
35230793edcSSatish Balay   }
35330793edcSSatish Balay 
35426fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
35526fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
35626fbe8dcSKarl Rupp 
357ab26458aSBarry Smith   for (i = 0; i < m; i++) {
3585ef9f2a5SBarry Smith     if (im[i] < 0) continue;
3596bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
360ab26458aSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
361ab26458aSBarry Smith       row = im[i] - rstart;
362ab26458aSBarry Smith       for (j = 0; j < n; j++) {
36315b57d14SSatish Balay         /* If NumCol = 1 then a copy is not required */
36415b57d14SSatish Balay         if ((roworiented) && (n == 1)) {
365f15d580aSBarry Smith           barray = (MatScalar *)v + i * bs2;
36615b57d14SSatish Balay         } else if ((!roworiented) && (m == 1)) {
367f15d580aSBarry Smith           barray = (MatScalar *)v + j * bs2;
36815b57d14SSatish Balay         } else { /* Here a copy is required */
369ab26458aSBarry Smith           if (roworiented) {
37053ef36baSBarry Smith             value = v + (i * (stepval + bs) + j) * bs;
371ab26458aSBarry Smith           } else {
37253ef36baSBarry Smith             value = v + (j * (stepval + bs) + i) * bs;
373abef11f7SSatish Balay           }
37453ef36baSBarry Smith           for (ii = 0; ii < bs; ii++, value += bs + stepval) {
37526fbe8dcSKarl Rupp             for (jj = 0; jj < bs; jj++) barray[jj] = value[jj];
37653ef36baSBarry Smith             barray += bs;
37747513183SBarry Smith           }
37830793edcSSatish Balay           barray -= bs2;
37915b57d14SSatish Balay         }
380abef11f7SSatish Balay 
381abef11f7SSatish Balay         if (in[j] >= cstart && in[j] < cend) {
382abef11f7SSatish Balay           col = in[j] - cstart;
3839566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
384f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
385f7d195e4SLawrence Mitchell           continue;
386f7d195e4SLawrence Mitchell         } else {
387f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
388ab26458aSBarry Smith           if (mat->was_assembled) {
389*48a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
390a5eb4965SSatish Balay 
3912515c552SBarry Smith #if defined(PETSC_USE_DEBUG)
392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
3939371c9d4SSatish Balay             {
3949371c9d4SSatish Balay               PetscInt data;
3959566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data));
39608401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
397fa46199cSSatish Balay             }
39848e59246SSatish Balay #else
39908401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
400a5eb4965SSatish Balay #endif
40148e59246SSatish Balay #endif
402aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
4039566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col));
404fa46199cSSatish Balay             col = (col - 1) / bs;
40548e59246SSatish Balay #else
406a5eb4965SSatish Balay             col = (baij->colmap[in[j]] - 1) / bs;
40748e59246SSatish Balay #endif
4080e9bae81SBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) {
4099566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
410ab26458aSBarry Smith               col = in[j];
4115f80ce2aSJacob Faibussowitsch             } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]);
412db4deed7SKarl Rupp           } else col = in[j];
4139566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
414ab26458aSBarry Smith         }
415ab26458aSBarry Smith       }
416d64ed03dSBarry Smith     } else {
4175f80ce2aSJacob Faibussowitsch       PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]);
418ab26458aSBarry Smith       if (!baij->donotstash) {
419ff2fd236SBarry Smith         if (roworiented) {
4209566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
421ff2fd236SBarry Smith         } else {
4229566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
423ff2fd236SBarry Smith         }
424abef11f7SSatish Balay       }
425ab26458aSBarry Smith     }
426ab26458aSBarry Smith   }
4273a40ed3dSBarry Smith   PetscFunctionReturn(0);
428ab26458aSBarry Smith }
4296fa18ffdSBarry Smith 
4300bdbc534SSatish Balay #define HASH_KEY             0.6180339887
431b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp)))
432b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
433b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */
4349371c9d4SSatish Balay PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) {
4350bdbc534SSatish Balay   Mat_MPIBAIJ *baij        = (Mat_MPIBAIJ *)mat->data;
436ace3abfcSBarry Smith   PetscBool    roworiented = baij->roworiented;
437b24ad042SBarry Smith   PetscInt     i, j, row, col;
438d0f46423SBarry Smith   PetscInt     rstart_orig = mat->rmap->rstart;
439d0f46423SBarry Smith   PetscInt     rend_orig = mat->rmap->rend, Nbs = baij->Nbs;
440d0f46423SBarry Smith   PetscInt     h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx;
441329f5518SBarry Smith   PetscReal    tmp;
4423eda8832SBarry Smith   MatScalar  **HD       = baij->hd, value;
443b24ad042SBarry Smith   PetscInt     total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
4440bdbc534SSatish Balay 
4450bdbc534SSatish Balay   PetscFunctionBegin;
4460bdbc534SSatish Balay   for (i = 0; i < m; i++) {
44776bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
4485f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row");
4495f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1);
45076bd3646SJed Brown     }
4510bdbc534SSatish Balay     row = im[i];
452c2760754SSatish Balay     if (row >= rstart_orig && row < rend_orig) {
4530bdbc534SSatish Balay       for (j = 0; j < n; j++) {
4540bdbc534SSatish Balay         col = in[j];
455db4deed7SKarl Rupp         if (roworiented) value = v[i * n + j];
456db4deed7SKarl Rupp         else value = v[i + j * m];
457b24ad042SBarry Smith         /* Look up PetscInto the Hash Table */
458c2760754SSatish Balay         key = (row / bs) * Nbs + (col / bs) + 1;
459c2760754SSatish Balay         h1  = HASH(size, key, tmp);
4600bdbc534SSatish Balay 
461c2760754SSatish Balay         idx = h1;
46276bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
463187ce0cbSSatish Balay           insert_ct++;
464187ce0cbSSatish Balay           total_ct++;
465187ce0cbSSatish Balay           if (HT[idx] != key) {
4669371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
4679371c9d4SSatish Balay               ;
468187ce0cbSSatish Balay             if (idx == size) {
4699371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
4709371c9d4SSatish Balay                 ;
4715f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
472187ce0cbSSatish Balay             }
473187ce0cbSSatish Balay           }
47476bd3646SJed Brown         } else if (HT[idx] != key) {
4759371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
4769371c9d4SSatish Balay             ;
477c2760754SSatish Balay           if (idx == size) {
4789371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
4799371c9d4SSatish Balay               ;
4805f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
481c2760754SSatish Balay           }
482c2760754SSatish Balay         }
483c2760754SSatish Balay         /* A HASH table entry is found, so insert the values at the correct address */
484c2760754SSatish Balay         if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value;
485c2760754SSatish Balay         else *(HD[idx] + (col % bs) * bs + (row % bs)) = value;
4860bdbc534SSatish Balay       }
48726fbe8dcSKarl Rupp     } else if (!baij->donotstash) {
488ff2fd236SBarry Smith       if (roworiented) {
4899566063dSJacob Faibussowitsch         PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE));
490ff2fd236SBarry Smith       } else {
4919566063dSJacob Faibussowitsch         PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE));
4920bdbc534SSatish Balay       }
4930bdbc534SSatish Balay     }
4940bdbc534SSatish Balay   }
49576bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
496abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
497abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
49876bd3646SJed Brown   }
4990bdbc534SSatish Balay   PetscFunctionReturn(0);
5000bdbc534SSatish Balay }
5010bdbc534SSatish Balay 
5029371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) {
5030bdbc534SSatish Balay   Mat_MPIBAIJ       *baij        = (Mat_MPIBAIJ *)mat->data;
504ace3abfcSBarry Smith   PetscBool          roworiented = baij->roworiented;
505b24ad042SBarry Smith   PetscInt           i, j, ii, jj, row, col;
506899cda47SBarry Smith   PetscInt           rstart = baij->rstartbs;
507d0f46423SBarry Smith   PetscInt           rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2;
508b24ad042SBarry Smith   PetscInt           h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs;
509329f5518SBarry Smith   PetscReal          tmp;
5103eda8832SBarry Smith   MatScalar        **HD = baij->hd, *baij_a;
511dd6ea824SBarry Smith   const PetscScalar *v_t, *value;
512b24ad042SBarry Smith   PetscInt           total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct;
5130bdbc534SSatish Balay 
514d0a41580SSatish Balay   PetscFunctionBegin;
51526fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
51626fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
51726fbe8dcSKarl Rupp 
5180bdbc534SSatish Balay   for (i = 0; i < m; i++) {
51976bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {
5205f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]);
5215f80ce2aSJacob Faibussowitsch       PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
52276bd3646SJed Brown     }
5230bdbc534SSatish Balay     row = im[i];
524ab715e2cSSatish Balay     v_t = v + i * nbs2;
525c2760754SSatish Balay     if (row >= rstart && row < rend) {
5260bdbc534SSatish Balay       for (j = 0; j < n; j++) {
5270bdbc534SSatish Balay         col = in[j];
5280bdbc534SSatish Balay 
5290bdbc534SSatish Balay         /* Look up into the Hash Table */
530c2760754SSatish Balay         key = row * Nbs + col + 1;
531c2760754SSatish Balay         h1  = HASH(size, key, tmp);
5320bdbc534SSatish Balay 
533c2760754SSatish Balay         idx = h1;
53476bd3646SJed Brown         if (PetscDefined(USE_DEBUG)) {
535187ce0cbSSatish Balay           total_ct++;
536187ce0cbSSatish Balay           insert_ct++;
537187ce0cbSSatish Balay           if (HT[idx] != key) {
5389371c9d4SSatish Balay             for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++)
5399371c9d4SSatish Balay               ;
540187ce0cbSSatish Balay             if (idx == size) {
5419371c9d4SSatish Balay               for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++)
5429371c9d4SSatish Balay                 ;
5435f80ce2aSJacob Faibussowitsch               PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
544187ce0cbSSatish Balay             }
545187ce0cbSSatish Balay           }
54676bd3646SJed Brown         } else if (HT[idx] != key) {
5479371c9d4SSatish Balay           for (idx = h1; (idx < size) && (HT[idx] != key); idx++)
5489371c9d4SSatish Balay             ;
549c2760754SSatish Balay           if (idx == size) {
5509371c9d4SSatish Balay             for (idx = 0; (idx < h1) && (HT[idx] != key); idx++)
5519371c9d4SSatish Balay               ;
5525f80ce2aSJacob Faibussowitsch             PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col);
553c2760754SSatish Balay           }
554c2760754SSatish Balay         }
555c2760754SSatish Balay         baij_a = HD[idx];
5560bdbc534SSatish Balay         if (roworiented) {
557c2760754SSatish Balay           /*value = v + i*(stepval+bs)*bs + j*bs;*/
558187ce0cbSSatish Balay           /* value = v + (i*(stepval+bs)+j)*bs; */
559187ce0cbSSatish Balay           value = v_t;
560187ce0cbSSatish Balay           v_t += bs;
561fef45726SSatish Balay           if (addv == ADD_VALUES) {
562c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
5639371c9d4SSatish Balay               for (jj = ii; jj < bs2; jj += bs) { baij_a[jj] += *value++; }
564b4cc0f5aSSatish Balay             }
565fef45726SSatish Balay           } else {
566c2760754SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval) {
5679371c9d4SSatish Balay               for (jj = ii; jj < bs2; jj += bs) { baij_a[jj] = *value++; }
568fef45726SSatish Balay             }
569fef45726SSatish Balay           }
5700bdbc534SSatish Balay         } else {
5710bdbc534SSatish Balay           value = v + j * (stepval + bs) * bs + i * bs;
572fef45726SSatish Balay           if (addv == ADD_VALUES) {
573b4cc0f5aSSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
5749371c9d4SSatish Balay               for (jj = 0; jj < bs; jj++) { baij_a[jj] += *value++; }
575fef45726SSatish Balay             }
576fef45726SSatish Balay           } else {
577fef45726SSatish Balay             for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) {
5789371c9d4SSatish Balay               for (jj = 0; jj < bs; jj++) { baij_a[jj] = *value++; }
579b4cc0f5aSSatish Balay             }
5800bdbc534SSatish Balay           }
5810bdbc534SSatish Balay         }
5820bdbc534SSatish Balay       }
5830bdbc534SSatish Balay     } else {
5840bdbc534SSatish Balay       if (!baij->donotstash) {
5850bdbc534SSatish Balay         if (roworiented) {
5869566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
5870bdbc534SSatish Balay         } else {
5889566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
5890bdbc534SSatish Balay         }
5900bdbc534SSatish Balay       }
5910bdbc534SSatish Balay     }
5920bdbc534SSatish Balay   }
59376bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) {
594abf3b562SBarry Smith     baij->ht_total_ct += total_ct;
595abf3b562SBarry Smith     baij->ht_insert_ct += insert_ct;
59676bd3646SJed Brown   }
5970bdbc534SSatish Balay   PetscFunctionReturn(0);
5980bdbc534SSatish Balay }
599133cdb44SSatish Balay 
6009371c9d4SSatish Balay PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) {
601d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
602d0f46423SBarry Smith   PetscInt     bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend;
603d0f46423SBarry Smith   PetscInt     bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data;
604d6de1c52SSatish Balay 
605133cdb44SSatish Balay   PetscFunctionBegin;
606d6de1c52SSatish Balay   for (i = 0; i < m; i++) {
60754c59aa7SJacob Faibussowitsch     if (idxm[i] < 0) continue; /* negative row */
60854c59aa7SJacob Faibussowitsch     PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1);
609d6de1c52SSatish Balay     if (idxm[i] >= bsrstart && idxm[i] < bsrend) {
610d6de1c52SSatish Balay       row = idxm[i] - bsrstart;
611d6de1c52SSatish Balay       for (j = 0; j < n; j++) {
61254c59aa7SJacob Faibussowitsch         if (idxn[j] < 0) continue; /* negative column */
61354c59aa7SJacob Faibussowitsch         PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1);
614d6de1c52SSatish Balay         if (idxn[j] >= bscstart && idxn[j] < bscend) {
615d6de1c52SSatish Balay           col = idxn[j] - bscstart;
6169566063dSJacob Faibussowitsch           PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j));
617d64ed03dSBarry Smith         } else {
618*48a46eb9SPierre Jolivet           if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
619aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
6209566063dSJacob Faibussowitsch           PetscCall(PetscTableFind(baij->colmap, idxn[j] / bs + 1, &data));
621fa46199cSSatish Balay           data--;
62248e59246SSatish Balay #else
62348e59246SSatish Balay           data = baij->colmap[idxn[j] / bs] - 1;
62448e59246SSatish Balay #endif
62548e59246SSatish Balay           if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0;
626d9d09a02SSatish Balay           else {
62748e59246SSatish Balay             col = data + idxn[j] % bs;
6289566063dSJacob Faibussowitsch             PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j));
629d6de1c52SSatish Balay           }
630d6de1c52SSatish Balay         }
631d6de1c52SSatish Balay       }
632f23aa3ddSBarry Smith     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported");
633d6de1c52SSatish Balay   }
6343a40ed3dSBarry Smith   PetscFunctionReturn(0);
635d6de1c52SSatish Balay }
636d6de1c52SSatish Balay 
6379371c9d4SSatish Balay PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) {
638d6de1c52SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
639d6de1c52SSatish Balay   Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data;
640d0f46423SBarry Smith   PetscInt     i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col;
641329f5518SBarry Smith   PetscReal    sum = 0.0;
6423eda8832SBarry Smith   MatScalar   *v;
643d6de1c52SSatish Balay 
644d64ed03dSBarry Smith   PetscFunctionBegin;
645d6de1c52SSatish Balay   if (baij->size == 1) {
6469566063dSJacob Faibussowitsch     PetscCall(MatNorm(baij->A, type, nrm));
647d6de1c52SSatish Balay   } else {
648d6de1c52SSatish Balay     if (type == NORM_FROBENIUS) {
649d6de1c52SSatish Balay       v  = amat->a;
6508a62d963SHong Zhang       nz = amat->nz * bs2;
6518a62d963SHong Zhang       for (i = 0; i < nz; i++) {
6529371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
6539371c9d4SSatish Balay         v++;
654d6de1c52SSatish Balay       }
655d6de1c52SSatish Balay       v  = bmat->a;
6568a62d963SHong Zhang       nz = bmat->nz * bs2;
6578a62d963SHong Zhang       for (i = 0; i < nz; i++) {
6589371c9d4SSatish Balay         sum += PetscRealPart(PetscConj(*v) * (*v));
6599371c9d4SSatish Balay         v++;
660d6de1c52SSatish Balay       }
6611c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
6628f1a2a5eSBarry Smith       *nrm = PetscSqrtReal(*nrm);
6638a62d963SHong Zhang     } else if (type == NORM_1) { /* max column sum */
6648a62d963SHong Zhang       PetscReal *tmp, *tmp2;
665899cda47SBarry Smith       PetscInt  *jj, *garray = baij->garray, cstart = baij->rstartbs;
6669566063dSJacob Faibussowitsch       PetscCall(PetscCalloc1(mat->cmap->N, &tmp));
6679566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(mat->cmap->N, &tmp2));
6689371c9d4SSatish Balay       v  = amat->a;
6699371c9d4SSatish Balay       jj = amat->j;
6708a62d963SHong Zhang       for (i = 0; i < amat->nz; i++) {
6718a62d963SHong Zhang         for (j = 0; j < bs; j++) {
6728a62d963SHong Zhang           col = bs * (cstart + *jj) + j; /* column index */
6738a62d963SHong Zhang           for (row = 0; row < bs; row++) {
6749371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
6759371c9d4SSatish Balay             v++;
6768a62d963SHong Zhang           }
6778a62d963SHong Zhang         }
6788a62d963SHong Zhang         jj++;
6798a62d963SHong Zhang       }
6809371c9d4SSatish Balay       v  = bmat->a;
6819371c9d4SSatish Balay       jj = bmat->j;
6828a62d963SHong Zhang       for (i = 0; i < bmat->nz; i++) {
6838a62d963SHong Zhang         for (j = 0; j < bs; j++) {
6848a62d963SHong Zhang           col = bs * garray[*jj] + j;
6858a62d963SHong Zhang           for (row = 0; row < bs; row++) {
6869371c9d4SSatish Balay             tmp[col] += PetscAbsScalar(*v);
6879371c9d4SSatish Balay             v++;
6888a62d963SHong Zhang           }
6898a62d963SHong Zhang         }
6908a62d963SHong Zhang         jj++;
6918a62d963SHong Zhang       }
6921c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat)));
6938a62d963SHong Zhang       *nrm = 0.0;
694d0f46423SBarry Smith       for (j = 0; j < mat->cmap->N; j++) {
6958a62d963SHong Zhang         if (tmp2[j] > *nrm) *nrm = tmp2[j];
6968a62d963SHong Zhang       }
6979566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp));
6989566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp2));
6998a62d963SHong Zhang     } else if (type == NORM_INFINITY) { /* max row sum */
700577dd1f9SKris Buschelman       PetscReal *sums;
7019566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(bs, &sums));
7028a62d963SHong Zhang       sum = 0.0;
7038a62d963SHong Zhang       for (j = 0; j < amat->mbs; j++) {
7048a62d963SHong Zhang         for (row = 0; row < bs; row++) sums[row] = 0.0;
7058a62d963SHong Zhang         v  = amat->a + bs2 * amat->i[j];
7068a62d963SHong Zhang         nz = amat->i[j + 1] - amat->i[j];
7078a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7088a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7098a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7109371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7119371c9d4SSatish Balay               v++;
7128a62d963SHong Zhang             }
7138a62d963SHong Zhang           }
7148a62d963SHong Zhang         }
7158a62d963SHong Zhang         v  = bmat->a + bs2 * bmat->i[j];
7168a62d963SHong Zhang         nz = bmat->i[j + 1] - bmat->i[j];
7178a62d963SHong Zhang         for (i = 0; i < nz; i++) {
7188a62d963SHong Zhang           for (col = 0; col < bs; col++) {
7198a62d963SHong Zhang             for (row = 0; row < bs; row++) {
7209371c9d4SSatish Balay               sums[row] += PetscAbsScalar(*v);
7219371c9d4SSatish Balay               v++;
7228a62d963SHong Zhang             }
7238a62d963SHong Zhang           }
7248a62d963SHong Zhang         }
7258a62d963SHong Zhang         for (row = 0; row < bs; row++) {
7268a62d963SHong Zhang           if (sums[row] > sum) sum = sums[row];
7278a62d963SHong Zhang         }
7288a62d963SHong Zhang       }
7291c2dc1cbSBarry Smith       PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat)));
7309566063dSJacob Faibussowitsch       PetscCall(PetscFree(sums));
731ce94432eSBarry Smith     } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet");
732d64ed03dSBarry Smith   }
7333a40ed3dSBarry Smith   PetscFunctionReturn(0);
734d6de1c52SSatish Balay }
73557b952d6SSatish Balay 
736fef45726SSatish Balay /*
737fef45726SSatish Balay   Creates the hash table, and sets the table
738fef45726SSatish Balay   This table is created only once.
739fef45726SSatish Balay   If new entried need to be added to the matrix
740fef45726SSatish Balay   then the hash table has to be destroyed and
741fef45726SSatish Balay   recreated.
742fef45726SSatish Balay */
7439371c9d4SSatish Balay PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) {
744596b8d2eSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
745596b8d2eSBarry Smith   Mat          A = baij->A, B = baij->B;
746596b8d2eSBarry Smith   Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data;
747b24ad042SBarry Smith   PetscInt     i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j;
748fca92195SBarry Smith   PetscInt     ht_size, bs2 = baij->bs2, rstart = baij->rstartbs;
749899cda47SBarry Smith   PetscInt     cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs;
750b24ad042SBarry Smith   PetscInt    *HT, key;
7513eda8832SBarry Smith   MatScalar  **HD;
752329f5518SBarry Smith   PetscReal    tmp;
7536cf91177SBarry Smith #if defined(PETSC_USE_INFO)
754b24ad042SBarry Smith   PetscInt ct = 0, max = 0;
7554a15367fSSatish Balay #endif
756fef45726SSatish Balay 
757d64ed03dSBarry Smith   PetscFunctionBegin;
758fca92195SBarry Smith   if (baij->ht) PetscFunctionReturn(0);
759fef45726SSatish Balay 
760fca92195SBarry Smith   baij->ht_size = (PetscInt)(factor * nz);
761fca92195SBarry Smith   ht_size       = baij->ht_size;
7620bdbc534SSatish Balay 
763fef45726SSatish Balay   /* Allocate Memory for Hash Table */
7649566063dSJacob Faibussowitsch   PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht));
765b9e4cc15SSatish Balay   HD = baij->hd;
766a07cd24cSSatish Balay   HT = baij->ht;
767b9e4cc15SSatish Balay 
768596b8d2eSBarry Smith   /* Loop Over A */
7690bdbc534SSatish Balay   for (i = 0; i < a->mbs; i++) {
770596b8d2eSBarry Smith     for (j = ai[i]; j < ai[i + 1]; j++) {
7710bdbc534SSatish Balay       row = i + rstart;
7720bdbc534SSatish Balay       col = aj[j] + cstart;
773596b8d2eSBarry Smith 
774187ce0cbSSatish Balay       key = row * Nbs + col + 1;
775fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
776fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
777fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
778fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
779fca92195SBarry Smith           HD[(h1 + k) % ht_size] = a->a + j * bs2;
780596b8d2eSBarry Smith           break;
7816cf91177SBarry Smith #if defined(PETSC_USE_INFO)
782187ce0cbSSatish Balay         } else {
783187ce0cbSSatish Balay           ct++;
784187ce0cbSSatish Balay #endif
785596b8d2eSBarry Smith         }
786187ce0cbSSatish Balay       }
7876cf91177SBarry Smith #if defined(PETSC_USE_INFO)
788187ce0cbSSatish Balay       if (k > max) max = k;
789187ce0cbSSatish Balay #endif
790596b8d2eSBarry Smith     }
791596b8d2eSBarry Smith   }
792596b8d2eSBarry Smith   /* Loop Over B */
7930bdbc534SSatish Balay   for (i = 0; i < b->mbs; i++) {
794596b8d2eSBarry Smith     for (j = bi[i]; j < bi[i + 1]; j++) {
7950bdbc534SSatish Balay       row = i + rstart;
7960bdbc534SSatish Balay       col = garray[bj[j]];
797187ce0cbSSatish Balay       key = row * Nbs + col + 1;
798fca92195SBarry Smith       h1  = HASH(ht_size, key, tmp);
799fca92195SBarry Smith       for (k = 0; k < ht_size; k++) {
800fca92195SBarry Smith         if (!HT[(h1 + k) % ht_size]) {
801fca92195SBarry Smith           HT[(h1 + k) % ht_size] = key;
802fca92195SBarry Smith           HD[(h1 + k) % ht_size] = b->a + j * bs2;
803596b8d2eSBarry Smith           break;
8046cf91177SBarry Smith #if defined(PETSC_USE_INFO)
805187ce0cbSSatish Balay         } else {
806187ce0cbSSatish Balay           ct++;
807187ce0cbSSatish Balay #endif
808596b8d2eSBarry Smith         }
809187ce0cbSSatish Balay       }
8106cf91177SBarry Smith #if defined(PETSC_USE_INFO)
811187ce0cbSSatish Balay       if (k > max) max = k;
812187ce0cbSSatish Balay #endif
813596b8d2eSBarry Smith     }
814596b8d2eSBarry Smith   }
815596b8d2eSBarry Smith 
816596b8d2eSBarry Smith   /* Print Summary */
8176cf91177SBarry Smith #if defined(PETSC_USE_INFO)
818fca92195SBarry Smith   for (i = 0, j = 0; i < ht_size; i++) {
81926fbe8dcSKarl Rupp     if (HT[i]) j++;
820c38d4ed2SBarry Smith   }
8219566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max));
822187ce0cbSSatish Balay #endif
8233a40ed3dSBarry Smith   PetscFunctionReturn(0);
824596b8d2eSBarry Smith }
82557b952d6SSatish Balay 
8269371c9d4SSatish Balay PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) {
827bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
828b24ad042SBarry Smith   PetscInt     nstash, reallocs;
829bbb85fb3SSatish Balay 
830bbb85fb3SSatish Balay   PetscFunctionBegin;
83126fbe8dcSKarl Rupp   if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0);
832bbb85fb3SSatish Balay 
8339566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range));
8349566063dSJacob Faibussowitsch   PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs));
8359566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs));
8369566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
8379566063dSJacob Faibussowitsch   PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs));
8389566063dSJacob Faibussowitsch   PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs));
839bbb85fb3SSatish Balay   PetscFunctionReturn(0);
840bbb85fb3SSatish Balay }
841bbb85fb3SSatish Balay 
8429371c9d4SSatish Balay PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) {
843bbb85fb3SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
84491c97fd4SSatish Balay   Mat_SeqBAIJ *a    = (Mat_SeqBAIJ *)baij->A->data;
845b24ad042SBarry Smith   PetscInt     i, j, rstart, ncols, flg, bs2 = baij->bs2;
846e44c0bd4SBarry Smith   PetscInt    *row, *col;
847ace3abfcSBarry Smith   PetscBool    r1, r2, r3, other_disassembled;
8483eda8832SBarry Smith   MatScalar   *val;
849b24ad042SBarry Smith   PetscMPIInt  n;
850bbb85fb3SSatish Balay 
851bbb85fb3SSatish Balay   PetscFunctionBegin;
8525fd66863SKarl Rupp   /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */
8534cb17eb5SBarry Smith   if (!baij->donotstash && !mat->nooffprocentries) {
854a2d1c673SSatish Balay     while (1) {
8559566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg));
856a2d1c673SSatish Balay       if (!flg) break;
857a2d1c673SSatish Balay 
858bbb85fb3SSatish Balay       for (i = 0; i < n;) {
859bbb85fb3SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
86026fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
86126fbe8dcSKarl Rupp           if (row[j] != rstart) break;
86226fbe8dcSKarl Rupp         }
863bbb85fb3SSatish Balay         if (j < n) ncols = j - i;
864bbb85fb3SSatish Balay         else ncols = n - i;
865bbb85fb3SSatish Balay         /* Now assemble all these values with a single function call */
8669566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode));
867bbb85fb3SSatish Balay         i = j;
868bbb85fb3SSatish Balay       }
869bbb85fb3SSatish Balay     }
8709566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->stash));
871a2d1c673SSatish Balay     /* Now process the block-stash. Since the values are stashed column-oriented,
872a2d1c673SSatish Balay        set the roworiented flag to column oriented, and after MatSetValues()
873a2d1c673SSatish Balay        restore the original flags */
874a2d1c673SSatish Balay     r1 = baij->roworiented;
875a2d1c673SSatish Balay     r2 = a->roworiented;
87691c97fd4SSatish Balay     r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented;
87726fbe8dcSKarl Rupp 
8787c922b88SBarry Smith     baij->roworiented = PETSC_FALSE;
8797c922b88SBarry Smith     a->roworiented    = PETSC_FALSE;
88026fbe8dcSKarl Rupp 
88191c97fd4SSatish Balay     (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */
882a2d1c673SSatish Balay     while (1) {
8839566063dSJacob Faibussowitsch       PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg));
884a2d1c673SSatish Balay       if (!flg) break;
885a2d1c673SSatish Balay 
886a2d1c673SSatish Balay       for (i = 0; i < n;) {
887a2d1c673SSatish Balay         /* Now identify the consecutive vals belonging to the same row */
88826fbe8dcSKarl Rupp         for (j = i, rstart = row[j]; j < n; j++) {
88926fbe8dcSKarl Rupp           if (row[j] != rstart) break;
89026fbe8dcSKarl Rupp         }
891a2d1c673SSatish Balay         if (j < n) ncols = j - i;
892a2d1c673SSatish Balay         else ncols = n - i;
8939566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode));
894a2d1c673SSatish Balay         i = j;
895a2d1c673SSatish Balay       }
896a2d1c673SSatish Balay     }
8979566063dSJacob Faibussowitsch     PetscCall(MatStashScatterEnd_Private(&mat->bstash));
89826fbe8dcSKarl Rupp 
899a2d1c673SSatish Balay     baij->roworiented = r1;
900a2d1c673SSatish Balay     a->roworiented    = r2;
90126fbe8dcSKarl Rupp 
90291c97fd4SSatish Balay     ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */
903bbb85fb3SSatish Balay   }
904bbb85fb3SSatish Balay 
9059566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->A, mode));
9069566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->A, mode));
907bbb85fb3SSatish Balay 
908bbb85fb3SSatish Balay   /* determine if any processor has disassembled, if so we must
9096aad120cSJose E. Roman      also disassemble ourselves, in order that we may reassemble. */
910bbb85fb3SSatish Balay   /*
911bbb85fb3SSatish Balay      if nonzero structure of submatrix B cannot change then we know that
912bbb85fb3SSatish Balay      no processor disassembled thus we can skip this stuff
913bbb85fb3SSatish Balay   */
914bbb85fb3SSatish Balay   if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) {
9155f9db2b2SJunchao Zhang     PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat)));
916*48a46eb9SPierre Jolivet     if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat));
917bbb85fb3SSatish Balay   }
918bbb85fb3SSatish Balay 
919*48a46eb9SPierre Jolivet   if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat));
9209566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(baij->B, mode));
9219566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(baij->B, mode));
922bbb85fb3SSatish Balay 
9236cf91177SBarry Smith #if defined(PETSC_USE_INFO)
924bbb85fb3SSatish Balay   if (baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9259566063dSJacob Faibussowitsch     PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct));
92626fbe8dcSKarl Rupp 
927bbb85fb3SSatish Balay     baij->ht_total_ct  = 0;
928bbb85fb3SSatish Balay     baij->ht_insert_ct = 0;
929bbb85fb3SSatish Balay   }
930bbb85fb3SSatish Balay #endif
931bbb85fb3SSatish Balay   if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) {
9329566063dSJacob Faibussowitsch     PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact));
93326fbe8dcSKarl Rupp 
934bbb85fb3SSatish Balay     mat->ops->setvalues        = MatSetValues_MPIBAIJ_HT;
935bbb85fb3SSatish Balay     mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT;
936bbb85fb3SSatish Balay   }
937bbb85fb3SSatish Balay 
9389566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
93926fbe8dcSKarl Rupp 
940f4259b30SLisandro Dalcin   baij->rowvalues = NULL;
9414f9cfa9eSBarry Smith 
9424f9cfa9eSBarry Smith   /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */
9434f9cfa9eSBarry Smith   if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
944e56f5c9eSBarry Smith     PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate;
9451c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat)));
946e56f5c9eSBarry Smith   }
947bbb85fb3SSatish Balay   PetscFunctionReturn(0);
948bbb85fb3SSatish Balay }
94957b952d6SSatish Balay 
9507da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer);
9519804daf3SBarry Smith #include <petscdraw.h>
9529371c9d4SSatish Balay static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) {
95357b952d6SSatish Balay   Mat_MPIBAIJ      *baij = (Mat_MPIBAIJ *)mat->data;
9547da1fb6eSBarry Smith   PetscMPIInt       rank = baij->rank;
955d0f46423SBarry Smith   PetscInt          bs   = mat->rmap->bs;
956ace3abfcSBarry Smith   PetscBool         iascii, isdraw;
957b0a32e0cSBarry Smith   PetscViewer       sviewer;
958f3ef73ceSBarry Smith   PetscViewerFormat format;
95957b952d6SSatish Balay 
960d64ed03dSBarry Smith   PetscFunctionBegin;
9619566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
9629566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
96332077d6dSBarry Smith   if (iascii) {
9649566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetFormat(viewer, &format));
965456192e2SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
9664e220ebcSLois Curfman McInnes       MatInfo info;
9679566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank));
9689566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(mat, MAT_LOCAL, &info));
9699566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
9709371c9d4SSatish Balay       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated,
9719371c9d4SSatish Balay                                                    mat->rmap->bs, (double)info.memory));
9729566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info));
9739566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9749566063dSJacob Faibussowitsch       PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info));
9759566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used));
9769566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9779566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
9789566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n"));
9799566063dSJacob Faibussowitsch       PetscCall(VecScatterView(baij->Mvctx, viewer));
9803a40ed3dSBarry Smith       PetscFunctionReturn(0);
981fb9695e5SSatish Balay     } else if (format == PETSC_VIEWER_ASCII_INFO) {
9829566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPrintf(viewer, "  block size is %" PetscInt_FMT "\n", bs));
9833a40ed3dSBarry Smith       PetscFunctionReturn(0);
98404929863SHong Zhang     } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) {
98504929863SHong Zhang       PetscFunctionReturn(0);
98657b952d6SSatish Balay     }
98757b952d6SSatish Balay   }
98857b952d6SSatish Balay 
9890f5bd95cSBarry Smith   if (isdraw) {
990b0a32e0cSBarry Smith     PetscDraw draw;
991ace3abfcSBarry Smith     PetscBool isnull;
9929566063dSJacob Faibussowitsch     PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw));
9939566063dSJacob Faibussowitsch     PetscCall(PetscDrawIsNull(draw, &isnull));
99445f3bb6eSLisandro Dalcin     if (isnull) PetscFunctionReturn(0);
99557b952d6SSatish Balay   }
99657b952d6SSatish Balay 
9977da1fb6eSBarry Smith   {
99857b952d6SSatish Balay     /* assemble the entire matrix onto first processor. */
99957b952d6SSatish Balay     Mat          A;
100057b952d6SSatish Balay     Mat_SeqBAIJ *Aloc;
1001d0f46423SBarry Smith     PetscInt     M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs;
10023eda8832SBarry Smith     MatScalar   *a;
10033e219373SBarry Smith     const char  *matname;
100457b952d6SSatish Balay 
1005f204ca49SKris Buschelman     /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */
1006f204ca49SKris Buschelman     /* Perhaps this should be the type of mat? */
10079566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A));
1008dd400576SPatrick Sanan     if (rank == 0) {
10099566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, M, N, M, N));
1010d64ed03dSBarry Smith     } else {
10119566063dSJacob Faibussowitsch       PetscCall(MatSetSizes(A, 0, 0, M, N));
101257b952d6SSatish Balay     }
10139566063dSJacob Faibussowitsch     PetscCall(MatSetType(A, MATMPIBAIJ));
10149566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL));
10159566063dSJacob Faibussowitsch     PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE));
10169566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)A));
101757b952d6SSatish Balay 
101857b952d6SSatish Balay     /* copy over the A part */
101957b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->A->data;
10209371c9d4SSatish Balay     ai   = Aloc->i;
10219371c9d4SSatish Balay     aj   = Aloc->j;
10229371c9d4SSatish Balay     a    = Aloc->a;
10239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs, &rvals));
102457b952d6SSatish Balay 
102557b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1026899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
102726fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
102857b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
1029899cda47SBarry Smith         col = (baij->cstartbs + aj[j]) * bs;
103057b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10319566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10329371c9d4SSatish Balay           col++;
10339371c9d4SSatish Balay           a += bs;
103457b952d6SSatish Balay         }
103557b952d6SSatish Balay       }
103657b952d6SSatish Balay     }
103757b952d6SSatish Balay     /* copy over the B part */
103857b952d6SSatish Balay     Aloc = (Mat_SeqBAIJ *)baij->B->data;
10399371c9d4SSatish Balay     ai   = Aloc->i;
10409371c9d4SSatish Balay     aj   = Aloc->j;
10419371c9d4SSatish Balay     a    = Aloc->a;
104257b952d6SSatish Balay     for (i = 0; i < mbs; i++) {
1043899cda47SBarry Smith       rvals[0] = bs * (baij->rstartbs + i);
104426fbe8dcSKarl Rupp       for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
104557b952d6SSatish Balay       for (j = ai[i]; j < ai[i + 1]; j++) {
104657b952d6SSatish Balay         col = baij->garray[aj[j]] * bs;
104757b952d6SSatish Balay         for (k = 0; k < bs; k++) {
10489566063dSJacob Faibussowitsch           PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES));
10499371c9d4SSatish Balay           col++;
10509371c9d4SSatish Balay           a += bs;
105157b952d6SSatish Balay         }
105257b952d6SSatish Balay       }
105357b952d6SSatish Balay     }
10549566063dSJacob Faibussowitsch     PetscCall(PetscFree(rvals));
10559566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
10569566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
105755843e3eSBarry Smith     /*
105855843e3eSBarry Smith        Everyone has to call to draw the matrix since the graphics waits are
1059b0a32e0cSBarry Smith        synchronized across all processors that share the PetscDraw object
106055843e3eSBarry Smith     */
10619566063dSJacob Faibussowitsch     PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
10629566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetName((PetscObject)mat, &matname));
1063dd400576SPatrick Sanan     if (rank == 0) {
10649566063dSJacob Faibussowitsch       PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname));
10659566063dSJacob Faibussowitsch       PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer));
106657b952d6SSatish Balay     }
10679566063dSJacob Faibussowitsch     PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer));
10689566063dSJacob Faibussowitsch     PetscCall(PetscViewerFlush(viewer));
10699566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&A));
107057b952d6SSatish Balay   }
10713a40ed3dSBarry Smith   PetscFunctionReturn(0);
107257b952d6SSatish Balay }
107357b952d6SSatish Balay 
1074618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
10759371c9d4SSatish Balay PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) {
1076b51a4376SLisandro Dalcin   Mat_MPIBAIJ    *aij    = (Mat_MPIBAIJ *)mat->data;
1077b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *A      = (Mat_SeqBAIJ *)aij->A->data;
1078b51a4376SLisandro Dalcin   Mat_SeqBAIJ    *B      = (Mat_SeqBAIJ *)aij->B->data;
1079b51a4376SLisandro Dalcin   const PetscInt *garray = aij->garray;
1080b51a4376SLisandro Dalcin   PetscInt        header[4], M, N, m, rs, cs, bs, nz, cnt, i, j, ja, jb, k, l;
1081b51a4376SLisandro Dalcin   PetscInt       *rowlens, *colidxs;
1082b51a4376SLisandro Dalcin   PetscScalar    *matvals;
1083660746e0SBarry Smith 
1084660746e0SBarry Smith   PetscFunctionBegin;
10859566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
1086b51a4376SLisandro Dalcin 
1087b51a4376SLisandro Dalcin   M  = mat->rmap->N;
1088b51a4376SLisandro Dalcin   N  = mat->cmap->N;
1089b51a4376SLisandro Dalcin   m  = mat->rmap->n;
1090b51a4376SLisandro Dalcin   rs = mat->rmap->rstart;
1091b51a4376SLisandro Dalcin   cs = mat->cmap->rstart;
1092b51a4376SLisandro Dalcin   bs = mat->rmap->bs;
1093b51a4376SLisandro Dalcin   nz = bs * bs * (A->nz + B->nz);
1094b51a4376SLisandro Dalcin 
1095b51a4376SLisandro Dalcin   /* write matrix header */
1096660746e0SBarry Smith   header[0] = MAT_FILE_CLASSID;
10979371c9d4SSatish Balay   header[1] = M;
10989371c9d4SSatish Balay   header[2] = N;
10999371c9d4SSatish Balay   header[3] = nz;
11009566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Reduce(&nz, &header[3], 1, MPIU_INT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat)));
11019566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT));
1102660746e0SBarry Smith 
1103b51a4376SLisandro Dalcin   /* fill in and store row lengths */
11049566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m, &rowlens));
1105b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++)
11069371c9d4SSatish Balay     for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]);
11079566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT));
11089566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowlens));
1109660746e0SBarry Smith 
1110b51a4376SLisandro Dalcin   /* fill in and store column indices */
11119566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &colidxs));
1112b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1113b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1114b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1115b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11169371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1117660746e0SBarry Smith       }
1118b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11199371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs;
1120b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11219371c9d4SSatish Balay         for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l;
1122660746e0SBarry Smith     }
1123660746e0SBarry Smith   }
11245f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz);
11259566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT));
11269566063dSJacob Faibussowitsch   PetscCall(PetscFree(colidxs));
1127660746e0SBarry Smith 
1128b51a4376SLisandro Dalcin   /* fill in and store nonzero values */
11299566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nz, &matvals));
1130b51a4376SLisandro Dalcin   for (cnt = 0, i = 0; i < A->mbs; i++) {
1131b51a4376SLisandro Dalcin     for (k = 0; k < bs; k++) {
1132b51a4376SLisandro Dalcin       for (jb = B->i[i]; jb < B->i[i + 1]; jb++) {
1133b51a4376SLisandro Dalcin         if (garray[B->j[jb]] > cs / bs) break;
11349371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1135660746e0SBarry Smith       }
1136b51a4376SLisandro Dalcin       for (ja = A->i[i]; ja < A->i[i + 1]; ja++)
11379371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k];
1138b51a4376SLisandro Dalcin       for (; jb < B->i[i + 1]; jb++)
11399371c9d4SSatish Balay         for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k];
1140660746e0SBarry Smith     }
1141b51a4376SLisandro Dalcin   }
11429566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR));
11439566063dSJacob Faibussowitsch   PetscCall(PetscFree(matvals));
1144660746e0SBarry Smith 
1145b51a4376SLisandro Dalcin   /* write block size option to the viewer's .info file */
11469566063dSJacob Faibussowitsch   PetscCall(MatView_Binary_BlockSizes(mat, viewer));
1147660746e0SBarry Smith   PetscFunctionReturn(0);
1148660746e0SBarry Smith }
1149660746e0SBarry Smith 
11509371c9d4SSatish Balay PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) {
1151ace3abfcSBarry Smith   PetscBool iascii, isdraw, issocket, isbinary;
115257b952d6SSatish Balay 
1153d64ed03dSBarry Smith   PetscFunctionBegin;
11549566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
11559566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw));
11569566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket));
11579566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
1158660746e0SBarry Smith   if (iascii || isdraw || issocket) {
11599566063dSJacob Faibussowitsch     PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer));
11601baa6e33SBarry Smith   } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer));
11613a40ed3dSBarry Smith   PetscFunctionReturn(0);
116257b952d6SSatish Balay }
116357b952d6SSatish Balay 
11649371c9d4SSatish Balay PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) {
116579bdfe76SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
116679bdfe76SSatish Balay 
1167d64ed03dSBarry Smith   PetscFunctionBegin;
1168aa482453SBarry Smith #if defined(PETSC_USE_LOG)
1169c0aa6a63SJacob Faibussowitsch   PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N);
117079bdfe76SSatish Balay #endif
11719566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->stash));
11729566063dSJacob Faibussowitsch   PetscCall(MatStashDestroy_Private(&mat->bstash));
11739566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->A));
11749566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&baij->B));
1175aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
11769566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&baij->colmap));
117748e59246SSatish Balay #else
11789566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->colmap));
117948e59246SSatish Balay #endif
11809566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->garray));
11819566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&baij->lvec));
11829566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&baij->Mvctx));
11839566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->rowvalues, baij->rowindices));
11849566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->barray));
11859566063dSJacob Faibussowitsch   PetscCall(PetscFree2(baij->hd, baij->ht));
11869566063dSJacob Faibussowitsch   PetscCall(PetscFree(baij->rangebs));
11879566063dSJacob Faibussowitsch   PetscCall(PetscFree(mat->data));
1188901853e0SKris Buschelman 
11899566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL));
11909566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL));
11919566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL));
11929566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL));
11939566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL));
11949566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL));
11959566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL));
11969566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL));
11972e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL));
11982e956fe4SStefano Zampini   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL));
11997ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
12009566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL));
12017ea3e4caSstefano_zampini #endif
12029566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL));
12033a40ed3dSBarry Smith   PetscFunctionReturn(0);
120479bdfe76SSatish Balay }
120579bdfe76SSatish Balay 
12069371c9d4SSatish Balay PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) {
1207cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1208b24ad042SBarry Smith   PetscInt     nt;
1209cee3aa6bSSatish Balay 
1210d64ed03dSBarry Smith   PetscFunctionBegin;
12119566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(xx, &nt));
12125f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx");
12139566063dSJacob Faibussowitsch   PetscCall(VecGetLocalSize(yy, &nt));
12145f80ce2aSJacob Faibussowitsch   PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible parition of A and yy");
12159566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12169566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->mult)(a->A, xx, yy));
12179566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12189566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy));
12193a40ed3dSBarry Smith   PetscFunctionReturn(0);
1220cee3aa6bSSatish Balay }
1221cee3aa6bSSatish Balay 
12229371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) {
1223cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1224d64ed03dSBarry Smith 
1225d64ed03dSBarry Smith   PetscFunctionBegin;
12269566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12279566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz));
12289566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD));
12299566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz));
12303a40ed3dSBarry Smith   PetscFunctionReturn(0);
1231cee3aa6bSSatish Balay }
1232cee3aa6bSSatish Balay 
12339371c9d4SSatish Balay PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) {
1234cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1235cee3aa6bSSatish Balay 
1236d64ed03dSBarry Smith   PetscFunctionBegin;
1237cee3aa6bSSatish Balay   /* do nondiagonal part */
12389566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1239cee3aa6bSSatish Balay   /* do local part */
12409566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy));
1241e4a140f6SJunchao Zhang   /* add partial results together */
12429566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12439566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE));
12443a40ed3dSBarry Smith   PetscFunctionReturn(0);
1245cee3aa6bSSatish Balay }
1246cee3aa6bSSatish Balay 
12479371c9d4SSatish Balay PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) {
1248cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1249cee3aa6bSSatish Balay 
1250d64ed03dSBarry Smith   PetscFunctionBegin;
1251cee3aa6bSSatish Balay   /* do nondiagonal part */
12529566063dSJacob Faibussowitsch   PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec));
1253cee3aa6bSSatish Balay   /* do local part */
12549566063dSJacob Faibussowitsch   PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz));
1255e4a140f6SJunchao Zhang   /* add partial results together */
12569566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12579566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE));
12583a40ed3dSBarry Smith   PetscFunctionReturn(0);
1259cee3aa6bSSatish Balay }
1260cee3aa6bSSatish Balay 
1261cee3aa6bSSatish Balay /*
1262cee3aa6bSSatish Balay   This only works correctly for square matrices where the subblock A->A is the
1263cee3aa6bSSatish Balay    diagonal block
1264cee3aa6bSSatish Balay */
12659371c9d4SSatish Balay PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) {
1266d64ed03dSBarry Smith   PetscFunctionBegin;
12675f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block");
12689566063dSJacob Faibussowitsch   PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v));
12693a40ed3dSBarry Smith   PetscFunctionReturn(0);
1270cee3aa6bSSatish Balay }
1271cee3aa6bSSatish Balay 
12729371c9d4SSatish Balay PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) {
1273cee3aa6bSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1274d64ed03dSBarry Smith 
1275d64ed03dSBarry Smith   PetscFunctionBegin;
12769566063dSJacob Faibussowitsch   PetscCall(MatScale(a->A, aa));
12779566063dSJacob Faibussowitsch   PetscCall(MatScale(a->B, aa));
12783a40ed3dSBarry Smith   PetscFunctionReturn(0);
1279cee3aa6bSSatish Balay }
1280026e39d0SSatish Balay 
12819371c9d4SSatish Balay PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) {
1282acdf5bf4SSatish Balay   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
128387828ca2SBarry Smith   PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p;
1284d0f46423SBarry Smith   PetscInt     bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB;
1285d0f46423SBarry Smith   PetscInt     nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend;
1286899cda47SBarry Smith   PetscInt    *cmap, *idx_p, cstart = mat->cstartbs;
1287acdf5bf4SSatish Balay 
1288d64ed03dSBarry Smith   PetscFunctionBegin;
12895f80ce2aSJacob Faibussowitsch   PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows");
12905f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active");
1291acdf5bf4SSatish Balay   mat->getrowactive = PETSC_TRUE;
1292acdf5bf4SSatish Balay 
1293acdf5bf4SSatish Balay   if (!mat->rowvalues && (idx || v)) {
1294acdf5bf4SSatish Balay     /*
1295acdf5bf4SSatish Balay         allocate enough space to hold information from the longest row.
1296acdf5bf4SSatish Balay     */
1297acdf5bf4SSatish Balay     Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data;
1298b24ad042SBarry Smith     PetscInt     max = 1, mbs = mat->mbs, tmp;
1299bd16c2feSSatish Balay     for (i = 0; i < mbs; i++) {
1300acdf5bf4SSatish Balay       tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i];
130126fbe8dcSKarl Rupp       if (max < tmp) max = tmp;
1302acdf5bf4SSatish Balay     }
13039566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices));
1304acdf5bf4SSatish Balay   }
1305d9d09a02SSatish Balay   lrow = row - brstart;
1306acdf5bf4SSatish Balay 
13079371c9d4SSatish Balay   pvA = &vworkA;
13089371c9d4SSatish Balay   pcA = &cworkA;
13099371c9d4SSatish Balay   pvB = &vworkB;
13109371c9d4SSatish Balay   pcB = &cworkB;
13119371c9d4SSatish Balay   if (!v) {
13129371c9d4SSatish Balay     pvA = NULL;
13139371c9d4SSatish Balay     pvB = NULL;
13149371c9d4SSatish Balay   }
13159371c9d4SSatish Balay   if (!idx) {
13169371c9d4SSatish Balay     pcA = NULL;
13179371c9d4SSatish Balay     if (!v) pcB = NULL;
13189371c9d4SSatish Balay   }
13199566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA));
13209566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB));
1321acdf5bf4SSatish Balay   nztot = nzA + nzB;
1322acdf5bf4SSatish Balay 
1323acdf5bf4SSatish Balay   cmap = mat->garray;
1324acdf5bf4SSatish Balay   if (v || idx) {
1325acdf5bf4SSatish Balay     if (nztot) {
1326acdf5bf4SSatish Balay       /* Sort by increasing column numbers, assuming A and B already sorted */
1327b24ad042SBarry Smith       PetscInt imark = -1;
1328acdf5bf4SSatish Balay       if (v) {
1329acdf5bf4SSatish Balay         *v = v_p = mat->rowvalues;
1330acdf5bf4SSatish Balay         for (i = 0; i < nzB; i++) {
1331d9d09a02SSatish Balay           if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i];
1332acdf5bf4SSatish Balay           else break;
1333acdf5bf4SSatish Balay         }
1334acdf5bf4SSatish Balay         imark = i;
1335acdf5bf4SSatish Balay         for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i];
1336acdf5bf4SSatish Balay         for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i];
1337acdf5bf4SSatish Balay       }
1338acdf5bf4SSatish Balay       if (idx) {
1339acdf5bf4SSatish Balay         *idx = idx_p = mat->rowindices;
1340acdf5bf4SSatish Balay         if (imark > -1) {
13419371c9d4SSatish Balay           for (i = 0; i < imark; i++) { idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; }
1342acdf5bf4SSatish Balay         } else {
1343acdf5bf4SSatish Balay           for (i = 0; i < nzB; i++) {
134426fbe8dcSKarl Rupp             if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1345acdf5bf4SSatish Balay             else break;
1346acdf5bf4SSatish Balay           }
1347acdf5bf4SSatish Balay           imark = i;
1348acdf5bf4SSatish Balay         }
1349d9d09a02SSatish Balay         for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i];
1350d9d09a02SSatish Balay         for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs;
1351acdf5bf4SSatish Balay       }
1352d64ed03dSBarry Smith     } else {
1353f4259b30SLisandro Dalcin       if (idx) *idx = NULL;
1354f4259b30SLisandro Dalcin       if (v) *v = NULL;
1355d212a18eSSatish Balay     }
1356acdf5bf4SSatish Balay   }
1357acdf5bf4SSatish Balay   *nz = nztot;
13589566063dSJacob Faibussowitsch   PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA));
13599566063dSJacob Faibussowitsch   PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB));
13603a40ed3dSBarry Smith   PetscFunctionReturn(0);
1361acdf5bf4SSatish Balay }
1362acdf5bf4SSatish Balay 
13639371c9d4SSatish Balay PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) {
1364acdf5bf4SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
1365d64ed03dSBarry Smith 
1366d64ed03dSBarry Smith   PetscFunctionBegin;
13675f80ce2aSJacob Faibussowitsch   PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called");
1368acdf5bf4SSatish Balay   baij->getrowactive = PETSC_FALSE;
13693a40ed3dSBarry Smith   PetscFunctionReturn(0);
1370acdf5bf4SSatish Balay }
1371acdf5bf4SSatish Balay 
13729371c9d4SSatish Balay PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) {
137358667388SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
1374d64ed03dSBarry Smith 
1375d64ed03dSBarry Smith   PetscFunctionBegin;
13769566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->A));
13779566063dSJacob Faibussowitsch   PetscCall(MatZeroEntries(l->B));
13783a40ed3dSBarry Smith   PetscFunctionReturn(0);
137958667388SSatish Balay }
13800ac07820SSatish Balay 
13819371c9d4SSatish Balay PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) {
13824e220ebcSLois Curfman McInnes   Mat_MPIBAIJ   *a = (Mat_MPIBAIJ *)matin->data;
13834e220ebcSLois Curfman McInnes   Mat            A = a->A, B = a->B;
13843966268fSBarry Smith   PetscLogDouble isend[5], irecv[5];
13850ac07820SSatish Balay 
1386d64ed03dSBarry Smith   PetscFunctionBegin;
1387d0f46423SBarry Smith   info->block_size = (PetscReal)matin->rmap->bs;
138826fbe8dcSKarl Rupp 
13899566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(A, MAT_LOCAL, info));
139026fbe8dcSKarl Rupp 
13919371c9d4SSatish Balay   isend[0] = info->nz_used;
13929371c9d4SSatish Balay   isend[1] = info->nz_allocated;
13939371c9d4SSatish Balay   isend[2] = info->nz_unneeded;
13949371c9d4SSatish Balay   isend[3] = info->memory;
13959371c9d4SSatish Balay   isend[4] = info->mallocs;
139626fbe8dcSKarl Rupp 
13979566063dSJacob Faibussowitsch   PetscCall(MatGetInfo(B, MAT_LOCAL, info));
139826fbe8dcSKarl Rupp 
13999371c9d4SSatish Balay   isend[0] += info->nz_used;
14009371c9d4SSatish Balay   isend[1] += info->nz_allocated;
14019371c9d4SSatish Balay   isend[2] += info->nz_unneeded;
14029371c9d4SSatish Balay   isend[3] += info->memory;
14039371c9d4SSatish Balay   isend[4] += info->mallocs;
140426fbe8dcSKarl Rupp 
14050ac07820SSatish Balay   if (flag == MAT_LOCAL) {
14064e220ebcSLois Curfman McInnes     info->nz_used      = isend[0];
14074e220ebcSLois Curfman McInnes     info->nz_allocated = isend[1];
14084e220ebcSLois Curfman McInnes     info->nz_unneeded  = isend[2];
14094e220ebcSLois Curfman McInnes     info->memory       = isend[3];
14104e220ebcSLois Curfman McInnes     info->mallocs      = isend[4];
14110ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_MAX) {
14121c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin)));
141326fbe8dcSKarl Rupp 
14144e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14154e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14164e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14174e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14184e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
14190ac07820SSatish Balay   } else if (flag == MAT_GLOBAL_SUM) {
14201c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin)));
142126fbe8dcSKarl Rupp 
14224e220ebcSLois Curfman McInnes     info->nz_used      = irecv[0];
14234e220ebcSLois Curfman McInnes     info->nz_allocated = irecv[1];
14244e220ebcSLois Curfman McInnes     info->nz_unneeded  = irecv[2];
14254e220ebcSLois Curfman McInnes     info->memory       = irecv[3];
14264e220ebcSLois Curfman McInnes     info->mallocs      = irecv[4];
142798921bdaSJacob Faibussowitsch   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag);
14284e220ebcSLois Curfman McInnes   info->fill_ratio_given  = 0; /* no parallel LU/ILU/Cholesky */
14294e220ebcSLois Curfman McInnes   info->fill_ratio_needed = 0;
14304e220ebcSLois Curfman McInnes   info->factor_mallocs    = 0;
14313a40ed3dSBarry Smith   PetscFunctionReturn(0);
14320ac07820SSatish Balay }
14330ac07820SSatish Balay 
14349371c9d4SSatish Balay PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) {
143558667388SSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
143658667388SSatish Balay 
1437d64ed03dSBarry Smith   PetscFunctionBegin;
143812c028f9SKris Buschelman   switch (op) {
1439512a5fc5SBarry Smith   case MAT_NEW_NONZERO_LOCATIONS:
144012c028f9SKris Buschelman   case MAT_NEW_NONZERO_ALLOCATION_ERR:
144128b2fa4aSMatthew Knepley   case MAT_UNUSED_NONZERO_LOCATION_ERR:
1442a9817697SBarry Smith   case MAT_KEEP_NONZERO_PATTERN:
144312c028f9SKris Buschelman   case MAT_NEW_NONZERO_LOCATION_ERR:
144443674050SBarry Smith     MatCheckPreallocated(A, 1);
14459566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14469566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
144712c028f9SKris Buschelman     break;
144812c028f9SKris Buschelman   case MAT_ROW_ORIENTED:
144943674050SBarry Smith     MatCheckPreallocated(A, 1);
14504e0d8c25SBarry Smith     a->roworiented = flg;
145126fbe8dcSKarl Rupp 
14529566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->A, op, flg));
14539566063dSJacob Faibussowitsch     PetscCall(MatSetOption(a->B, op, flg));
145412c028f9SKris Buschelman     break;
14558c78258cSHong Zhang   case MAT_FORCE_DIAGONAL_ENTRIES:
14569371c9d4SSatish Balay   case MAT_SORTED_FULL: PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); break;
14579371c9d4SSatish Balay   case MAT_IGNORE_OFF_PROC_ENTRIES: a->donotstash = flg; break;
145812c028f9SKris Buschelman   case MAT_USE_HASH_TABLE:
14594e0d8c25SBarry Smith     a->ht_flag = flg;
1460abf3b562SBarry Smith     a->ht_fact = 1.39;
146112c028f9SKris Buschelman     break;
146277e54ba9SKris Buschelman   case MAT_SYMMETRIC:
146377e54ba9SKris Buschelman   case MAT_STRUCTURALLY_SYMMETRIC:
14642188ac68SBarry Smith   case MAT_HERMITIAN:
1465c10200c1SHong Zhang   case MAT_SUBMAT_SINGLEIS:
14662188ac68SBarry Smith   case MAT_SYMMETRY_ETERNAL:
1467b94d7dedSBarry Smith   case MAT_STRUCTURAL_SYMMETRY_ETERNAL:
1468b94d7dedSBarry Smith   case MAT_SPD_ETERNAL:
1469b94d7dedSBarry Smith     /* if the diagonal matrix is square it inherits some of the properties above */
147077e54ba9SKris Buschelman     break;
14719371c9d4SSatish Balay   default: SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op);
1472d64ed03dSBarry Smith   }
14733a40ed3dSBarry Smith   PetscFunctionReturn(0);
147458667388SSatish Balay }
147558667388SSatish Balay 
14769371c9d4SSatish Balay PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) {
14770ac07820SSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data;
14780ac07820SSatish Balay   Mat_SeqBAIJ *Aloc;
14790ac07820SSatish Balay   Mat          B;
1480d0f46423SBarry Smith   PetscInt     M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col;
1481d0f46423SBarry Smith   PetscInt     bs = A->rmap->bs, mbs = baij->mbs;
14823eda8832SBarry Smith   MatScalar   *a;
14830ac07820SSatish Balay 
1484d64ed03dSBarry Smith   PetscFunctionBegin;
14857fb60732SBarry Smith   if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout));
1486cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) {
14879566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
14889566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M));
14899566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, ((PetscObject)A)->type_name));
14902e72b8d9SBarry Smith     /* Do not know preallocation information, but must set block size */
14919566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL));
1492fc4dec0aSBarry Smith   } else {
1493fc4dec0aSBarry Smith     B = *matout;
1494fc4dec0aSBarry Smith   }
14950ac07820SSatish Balay 
14960ac07820SSatish Balay   /* copy over the A part */
14970ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->A->data;
14989371c9d4SSatish Balay   ai   = Aloc->i;
14999371c9d4SSatish Balay   aj   = Aloc->j;
15009371c9d4SSatish Balay   a    = Aloc->a;
15019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(bs, &rvals));
15020ac07820SSatish Balay 
15030ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1504899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
150526fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15060ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
1507899cda47SBarry Smith       col = (baij->cstartbs + aj[j]) * bs;
15080ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15099566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
151026fbe8dcSKarl Rupp 
15119371c9d4SSatish Balay         col++;
15129371c9d4SSatish Balay         a += bs;
15130ac07820SSatish Balay       }
15140ac07820SSatish Balay     }
15150ac07820SSatish Balay   }
15160ac07820SSatish Balay   /* copy over the B part */
15170ac07820SSatish Balay   Aloc = (Mat_SeqBAIJ *)baij->B->data;
15189371c9d4SSatish Balay   ai   = Aloc->i;
15199371c9d4SSatish Balay   aj   = Aloc->j;
15209371c9d4SSatish Balay   a    = Aloc->a;
15210ac07820SSatish Balay   for (i = 0; i < mbs; i++) {
1522899cda47SBarry Smith     rvals[0] = bs * (baij->rstartbs + i);
152326fbe8dcSKarl Rupp     for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1;
15240ac07820SSatish Balay     for (j = ai[i]; j < ai[i + 1]; j++) {
15250ac07820SSatish Balay       col = baij->garray[aj[j]] * bs;
15260ac07820SSatish Balay       for (k = 0; k < bs; k++) {
15279566063dSJacob Faibussowitsch         PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES));
152826fbe8dcSKarl Rupp         col++;
152926fbe8dcSKarl Rupp         a += bs;
15300ac07820SSatish Balay       }
15310ac07820SSatish Balay     }
15320ac07820SSatish Balay   }
15339566063dSJacob Faibussowitsch   PetscCall(PetscFree(rvals));
15349566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
15359566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
15360ac07820SSatish Balay 
1537cf37664fSBarry Smith   if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B;
1538*48a46eb9SPierre Jolivet   else PetscCall(MatHeaderMerge(A, &B));
15393a40ed3dSBarry Smith   PetscFunctionReturn(0);
15400ac07820SSatish Balay }
15410e95ebc0SSatish Balay 
15429371c9d4SSatish Balay PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) {
154336c4a09eSSatish Balay   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
154436c4a09eSSatish Balay   Mat          a = baij->A, b = baij->B;
1545b24ad042SBarry Smith   PetscInt     s1, s2, s3;
15460e95ebc0SSatish Balay 
1547d64ed03dSBarry Smith   PetscFunctionBegin;
15489566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &s2, &s3));
154936c4a09eSSatish Balay   if (rr) {
15509566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(rr, &s1));
15515f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size");
155236c4a09eSSatish Balay     /* Overlap communication with computation. */
15539566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
155436c4a09eSSatish Balay   }
15550e95ebc0SSatish Balay   if (ll) {
15569566063dSJacob Faibussowitsch     PetscCall(VecGetLocalSize(ll, &s1));
15575f80ce2aSJacob Faibussowitsch     PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size");
1558dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, ll, NULL);
15590e95ebc0SSatish Balay   }
156036c4a09eSSatish Balay   /* scale  the diagonal block */
1561dbbe0bcdSBarry Smith   PetscUseTypeMethod(a, diagonalscale, ll, rr);
156236c4a09eSSatish Balay 
156336c4a09eSSatish Balay   if (rr) {
156436c4a09eSSatish Balay     /* Do a scatter end and then right scale the off-diagonal block */
15659566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD));
1566dbbe0bcdSBarry Smith     PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec);
156736c4a09eSSatish Balay   }
15683a40ed3dSBarry Smith   PetscFunctionReturn(0);
15690e95ebc0SSatish Balay }
15700e95ebc0SSatish Balay 
15719371c9d4SSatish Balay PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) {
15720ac07820SSatish Balay   Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data;
157365a92638SMatthew G. Knepley   PetscInt    *lrows;
15746e520ac8SStefano Zampini   PetscInt     r, len;
157594342113SStefano Zampini   PetscBool    cong;
15760ac07820SSatish Balay 
1577d64ed03dSBarry Smith   PetscFunctionBegin;
15786e520ac8SStefano Zampini   /* get locally owned rows */
15799566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows));
158097b48c8fSBarry Smith   /* fix right hand side if needed */
158197b48c8fSBarry Smith   if (x && b) {
158265a92638SMatthew G. Knepley     const PetscScalar *xx;
158365a92638SMatthew G. Knepley     PetscScalar       *bb;
158465a92638SMatthew G. Knepley 
15859566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(x, &xx));
15869566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
158765a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]];
15889566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(x, &xx));
15899566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
159097b48c8fSBarry Smith   }
159197b48c8fSBarry Smith 
15920ac07820SSatish Balay   /* actually zap the local rows */
159372dacd9aSBarry Smith   /*
159472dacd9aSBarry Smith         Zero the required rows. If the "diagonal block" of the matrix
1595a8c7a070SBarry Smith      is square and the user wishes to set the diagonal we use separate
159672dacd9aSBarry Smith      code so that MatSetValues() is not called for each diagonal allocating
159772dacd9aSBarry Smith      new memory, thus calling lots of mallocs and slowing things down.
159872dacd9aSBarry Smith 
159972dacd9aSBarry Smith   */
16009c957beeSSatish Balay   /* must zero l->B before l->A because the (diag) case below may put values into l->B*/
16019566063dSJacob Faibussowitsch   PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL));
16029566063dSJacob Faibussowitsch   PetscCall(MatHasCongruentLayouts(A, &cong));
160394342113SStefano Zampini   if ((diag != 0.0) && cong) {
16049566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL));
1605f4df32b1SMatthew Knepley   } else if (diag != 0.0) {
16069566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
16075f80ce2aSJacob Faibussowitsch     PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\
1608512a5fc5SBarry Smith        MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR");
160965a92638SMatthew G. Knepley     for (r = 0; r < len; ++r) {
161065a92638SMatthew G. Knepley       const PetscInt row = lrows[r] + A->rmap->rstart;
16119566063dSJacob Faibussowitsch       PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES));
1612a07cd24cSSatish Balay     }
16139566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
16149566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
16159c957beeSSatish Balay   } else {
16169566063dSJacob Faibussowitsch     PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL));
1617a07cd24cSSatish Balay   }
16189566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
16194f9cfa9eSBarry Smith 
16204f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
16214f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
1622e56f5c9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
16231c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
1624e56f5c9eSBarry Smith   }
16253a40ed3dSBarry Smith   PetscFunctionReturn(0);
16260ac07820SSatish Balay }
162772dacd9aSBarry Smith 
16289371c9d4SSatish Balay PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) {
16296f0a72daSMatthew G. Knepley   Mat_MPIBAIJ       *l = (Mat_MPIBAIJ *)A->data;
1630131c27b5Sprj-   PetscMPIInt        n = A->rmap->n, p = 0;
1631131c27b5Sprj-   PetscInt           i, j, k, r, len = 0, row, col, count;
16326f0a72daSMatthew G. Knepley   PetscInt          *lrows, *owners = A->rmap->range;
16336f0a72daSMatthew G. Knepley   PetscSFNode       *rrows;
16346f0a72daSMatthew G. Knepley   PetscSF            sf;
16356f0a72daSMatthew G. Knepley   const PetscScalar *xx;
16366f0a72daSMatthew G. Knepley   PetscScalar       *bb, *mask;
16376f0a72daSMatthew G. Knepley   Vec                xmask, lmask;
16386f0a72daSMatthew G. Knepley   Mat_SeqBAIJ       *baij = (Mat_SeqBAIJ *)l->B->data;
16396f0a72daSMatthew G. Knepley   PetscInt           bs = A->rmap->bs, bs2 = baij->bs2;
16406f0a72daSMatthew G. Knepley   PetscScalar       *aa;
16416f0a72daSMatthew G. Knepley 
16426f0a72daSMatthew G. Knepley   PetscFunctionBegin;
16436f0a72daSMatthew G. Knepley   /* Create SF where leaves are input rows and roots are owned rows */
16449566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(n, &lrows));
16456f0a72daSMatthew G. Knepley   for (r = 0; r < n; ++r) lrows[r] = -1;
16469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(N, &rrows));
16476f0a72daSMatthew G. Knepley   for (r = 0; r < N; ++r) {
16486f0a72daSMatthew G. Knepley     const PetscInt idx = rows[r];
16495f80ce2aSJacob Faibussowitsch     PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N);
16505ba17502SJed Brown     if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */
16519566063dSJacob Faibussowitsch       PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p));
16525ba17502SJed Brown     }
16536f0a72daSMatthew G. Knepley     rrows[r].rank  = p;
16546f0a72daSMatthew G. Knepley     rrows[r].index = rows[r] - owners[p];
16556f0a72daSMatthew G. Knepley   }
16569566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf));
16579566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER));
16586f0a72daSMatthew G. Knepley   /* Collect flags for rows to be zeroed */
16599566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16609566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR));
16619566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf));
16626f0a72daSMatthew G. Knepley   /* Compress and put in row numbers */
16639371c9d4SSatish Balay   for (r = 0; r < n; ++r)
16649371c9d4SSatish Balay     if (lrows[r] >= 0) lrows[len++] = r;
16656f0a72daSMatthew G. Knepley   /* zero diagonal part of matrix */
16669566063dSJacob Faibussowitsch   PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b));
16676f0a72daSMatthew G. Knepley   /* handle off diagonal part of matrix */
16689566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(A, &xmask, NULL));
16699566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(l->lvec, &lmask));
16709566063dSJacob Faibussowitsch   PetscCall(VecGetArray(xmask, &bb));
16716f0a72daSMatthew G. Knepley   for (i = 0; i < len; i++) bb[lrows[i]] = 1;
16729566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(xmask, &bb));
16739566063dSJacob Faibussowitsch   PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
16749566063dSJacob Faibussowitsch   PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD));
16759566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&xmask));
16766f0a72daSMatthew G. Knepley   if (x) {
16779566063dSJacob Faibussowitsch     PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
16789566063dSJacob Faibussowitsch     PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD));
16799566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(l->lvec, &xx));
16809566063dSJacob Faibussowitsch     PetscCall(VecGetArray(b, &bb));
16816f0a72daSMatthew G. Knepley   }
16829566063dSJacob Faibussowitsch   PetscCall(VecGetArray(lmask, &mask));
16836f0a72daSMatthew G. Knepley   /* remove zeroed rows of off diagonal matrix */
16846f0a72daSMatthew G. Knepley   for (i = 0; i < len; ++i) {
16856f0a72daSMatthew G. Knepley     row   = lrows[i];
16866f0a72daSMatthew G. Knepley     count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs;
16876f0a72daSMatthew G. Knepley     aa    = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs);
16886f0a72daSMatthew G. Knepley     for (k = 0; k < count; ++k) {
16896f0a72daSMatthew G. Knepley       aa[0] = 0.0;
16906f0a72daSMatthew G. Knepley       aa += bs;
16916f0a72daSMatthew G. Knepley     }
16926f0a72daSMatthew G. Knepley   }
16936f0a72daSMatthew G. Knepley   /* loop over all elements of off process part of matrix zeroing removed columns*/
16946f0a72daSMatthew G. Knepley   for (i = 0; i < l->B->rmap->N; ++i) {
16956f0a72daSMatthew G. Knepley     row = i / bs;
16966f0a72daSMatthew G. Knepley     for (j = baij->i[row]; j < baij->i[row + 1]; ++j) {
16976f0a72daSMatthew G. Knepley       for (k = 0; k < bs; ++k) {
16986f0a72daSMatthew G. Knepley         col = bs * baij->j[j] + k;
16996f0a72daSMatthew G. Knepley         if (PetscAbsScalar(mask[col])) {
17006f0a72daSMatthew G. Knepley           aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k;
170189ae1891SBarry Smith           if (x) bb[i] -= aa[0] * xx[col];
17026f0a72daSMatthew G. Knepley           aa[0] = 0.0;
17036f0a72daSMatthew G. Knepley         }
17046f0a72daSMatthew G. Knepley       }
17056f0a72daSMatthew G. Knepley     }
17066f0a72daSMatthew G. Knepley   }
17076f0a72daSMatthew G. Knepley   if (x) {
17089566063dSJacob Faibussowitsch     PetscCall(VecRestoreArray(b, &bb));
17099566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(l->lvec, &xx));
17106f0a72daSMatthew G. Knepley   }
17119566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(lmask, &mask));
17129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&lmask));
17139566063dSJacob Faibussowitsch   PetscCall(PetscFree(lrows));
17144f9cfa9eSBarry Smith 
17154f9cfa9eSBarry Smith   /* only change matrix nonzero state if pattern was allowed to be changed */
17164f9cfa9eSBarry Smith   if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) {
17174f9cfa9eSBarry Smith     PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate;
17181c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A)));
17194f9cfa9eSBarry Smith   }
17206f0a72daSMatthew G. Knepley   PetscFunctionReturn(0);
17216f0a72daSMatthew G. Knepley }
17226f0a72daSMatthew G. Knepley 
17239371c9d4SSatish Balay PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) {
1724bb5a7306SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
1725d64ed03dSBarry Smith 
1726d64ed03dSBarry Smith   PetscFunctionBegin;
17279566063dSJacob Faibussowitsch   PetscCall(MatSetUnfactored(a->A));
17283a40ed3dSBarry Smith   PetscFunctionReturn(0);
1729bb5a7306SBarry Smith }
1730bb5a7306SBarry Smith 
17316849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *);
17320ac07820SSatish Balay 
17339371c9d4SSatish Balay PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) {
17347fc3c18eSBarry Smith   Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data;
17357fc3c18eSBarry Smith   Mat          a, b, c, d;
1736ace3abfcSBarry Smith   PetscBool    flg;
17377fc3c18eSBarry Smith 
17387fc3c18eSBarry Smith   PetscFunctionBegin;
17399371c9d4SSatish Balay   a = matA->A;
17409371c9d4SSatish Balay   b = matA->B;
17419371c9d4SSatish Balay   c = matB->A;
17429371c9d4SSatish Balay   d = matB->B;
17437fc3c18eSBarry Smith 
17449566063dSJacob Faibussowitsch   PetscCall(MatEqual(a, c, &flg));
1745*48a46eb9SPierre Jolivet   if (flg) PetscCall(MatEqual(b, d, &flg));
17461c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A)));
17477fc3c18eSBarry Smith   PetscFunctionReturn(0);
17487fc3c18eSBarry Smith }
17497fc3c18eSBarry Smith 
17509371c9d4SSatish Balay PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) {
17513c896bc6SHong Zhang   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
17523c896bc6SHong Zhang   Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data;
17533c896bc6SHong Zhang 
17543c896bc6SHong Zhang   PetscFunctionBegin;
17553c896bc6SHong Zhang   /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */
17563c896bc6SHong Zhang   if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) {
17579566063dSJacob Faibussowitsch     PetscCall(MatCopy_Basic(A, B, str));
17583c896bc6SHong Zhang   } else {
17599566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->A, b->A, str));
17609566063dSJacob Faibussowitsch     PetscCall(MatCopy(a->B, b->B, str));
17613c896bc6SHong Zhang   }
17629566063dSJacob Faibussowitsch   PetscCall(PetscObjectStateIncrease((PetscObject)B));
17633c896bc6SHong Zhang   PetscFunctionReturn(0);
17643c896bc6SHong Zhang }
1765273d9f13SBarry Smith 
17669371c9d4SSatish Balay PetscErrorCode MatSetUp_MPIBAIJ(Mat A) {
1767273d9f13SBarry Smith   PetscFunctionBegin;
17689566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(A, A->rmap->bs, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL));
1769273d9f13SBarry Smith   PetscFunctionReturn(0);
1770273d9f13SBarry Smith }
1771273d9f13SBarry Smith 
17729371c9d4SSatish Balay PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) {
1773001ddc4fSHong Zhang   PetscInt     bs = Y->rmap->bs, m = Y->rmap->N / bs;
17744de5dceeSHong Zhang   Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data;
17754de5dceeSHong Zhang   Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data;
17764de5dceeSHong Zhang 
17774de5dceeSHong Zhang   PetscFunctionBegin;
17789566063dSJacob Faibussowitsch   PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz));
17794de5dceeSHong Zhang   PetscFunctionReturn(0);
17804de5dceeSHong Zhang }
17814de5dceeSHong Zhang 
17829371c9d4SSatish Balay PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) {
17834fe895cdSHong Zhang   Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data;
17844fe895cdSHong Zhang   PetscBLASInt bnz, one                         = 1;
17854fe895cdSHong Zhang   Mat_SeqBAIJ *x, *y;
1786b31f67cfSBarry Smith   PetscInt     bs2 = Y->rmap->bs * Y->rmap->bs;
17874fe895cdSHong Zhang 
17884fe895cdSHong Zhang   PetscFunctionBegin;
17894fe895cdSHong Zhang   if (str == SAME_NONZERO_PATTERN) {
17904fe895cdSHong Zhang     PetscScalar alpha = a;
17914fe895cdSHong Zhang     x                 = (Mat_SeqBAIJ *)xx->A->data;
17924fe895cdSHong Zhang     y                 = (Mat_SeqBAIJ *)yy->A->data;
17939566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1794792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
17954fe895cdSHong Zhang     x = (Mat_SeqBAIJ *)xx->B->data;
17964fe895cdSHong Zhang     y = (Mat_SeqBAIJ *)yy->B->data;
17979566063dSJacob Faibussowitsch     PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz));
1798792fecdfSBarry Smith     PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one));
17999566063dSJacob Faibussowitsch     PetscCall(PetscObjectStateIncrease((PetscObject)Y));
1800ab784542SHong Zhang   } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */
18019566063dSJacob Faibussowitsch     PetscCall(MatAXPY_Basic(Y, a, X, str));
18024fe895cdSHong Zhang   } else {
18034de5dceeSHong Zhang     Mat       B;
18044de5dceeSHong Zhang     PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs;
18059566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d));
18069566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o));
18079566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B));
18089566063dSJacob Faibussowitsch     PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name));
18099566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N));
18109566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizesFromMats(B, Y, Y));
18119566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIBAIJ));
18129566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d));
18139566063dSJacob Faibussowitsch     PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o));
18149566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o));
18154de5dceeSHong Zhang     /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */
18169566063dSJacob Faibussowitsch     PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str));
18179566063dSJacob Faibussowitsch     PetscCall(MatHeaderMerge(Y, &B));
18189566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_d));
18199566063dSJacob Faibussowitsch     PetscCall(PetscFree(nnz_o));
18204fe895cdSHong Zhang   }
18214fe895cdSHong Zhang   PetscFunctionReturn(0);
18224fe895cdSHong Zhang }
18234fe895cdSHong Zhang 
18249371c9d4SSatish Balay PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) {
18255f80ce2aSJacob Faibussowitsch   PetscFunctionBegin;
18265f80ce2aSJacob Faibussowitsch   if (PetscDefined(USE_COMPLEX)) {
18272726fb6dSPierre Jolivet     Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data;
18282726fb6dSPierre Jolivet 
18299566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->A));
18309566063dSJacob Faibussowitsch     PetscCall(MatConjugate_SeqBAIJ(a->B));
18315f80ce2aSJacob Faibussowitsch   }
18322726fb6dSPierre Jolivet   PetscFunctionReturn(0);
18332726fb6dSPierre Jolivet }
18342726fb6dSPierre Jolivet 
18359371c9d4SSatish Balay PetscErrorCode MatRealPart_MPIBAIJ(Mat A) {
183699cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
183799cafbc1SBarry Smith 
183899cafbc1SBarry Smith   PetscFunctionBegin;
18399566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->A));
18409566063dSJacob Faibussowitsch   PetscCall(MatRealPart(a->B));
184199cafbc1SBarry Smith   PetscFunctionReturn(0);
184299cafbc1SBarry Smith }
184399cafbc1SBarry Smith 
18449371c9d4SSatish Balay PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) {
184599cafbc1SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
184699cafbc1SBarry Smith 
184799cafbc1SBarry Smith   PetscFunctionBegin;
18489566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->A));
18499566063dSJacob Faibussowitsch   PetscCall(MatImaginaryPart(a->B));
185099cafbc1SBarry Smith   PetscFunctionReturn(0);
185199cafbc1SBarry Smith }
185299cafbc1SBarry Smith 
18539371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) {
18544aa3045dSJed Brown   IS       iscol_local;
18554aa3045dSJed Brown   PetscInt csize;
18564aa3045dSJed Brown 
18574aa3045dSJed Brown   PetscFunctionBegin;
18589566063dSJacob Faibussowitsch   PetscCall(ISGetLocalSize(iscol, &csize));
1859b79d0421SJed Brown   if (call == MAT_REUSE_MATRIX) {
18609566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local));
18615f80ce2aSJacob Faibussowitsch     PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
1862b79d0421SJed Brown   } else {
18639566063dSJacob Faibussowitsch     PetscCall(ISAllGather(iscol, &iscol_local));
1864b79d0421SJed Brown   }
18659566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat));
1866b79d0421SJed Brown   if (call == MAT_INITIAL_MATRIX) {
18679566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local));
18689566063dSJacob Faibussowitsch     PetscCall(ISDestroy(&iscol_local));
1869b79d0421SJed Brown   }
18704aa3045dSJed Brown   PetscFunctionReturn(0);
18714aa3045dSJed Brown }
187217df9f7cSHong Zhang 
187382094794SBarry Smith /*
187482094794SBarry Smith   Not great since it makes two copies of the submatrix, first an SeqBAIJ
187582094794SBarry Smith   in local and then by concatenating the local matrices the end result.
18767dae84e0SHong Zhang   Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ().
18778f46ffcaSHong Zhang   This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency).
187882094794SBarry Smith */
18799371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) {
188082094794SBarry Smith   PetscMPIInt  rank, size;
188182094794SBarry Smith   PetscInt     i, m, n, rstart, row, rend, nz, *cwork, j, bs;
1882c9ffca76SHong Zhang   PetscInt    *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal;
188329dcf524SDmitry Karpeev   Mat          M, Mreuse;
188482094794SBarry Smith   MatScalar   *vwork, *aa;
1885ce94432eSBarry Smith   MPI_Comm     comm;
188629dcf524SDmitry Karpeev   IS           isrow_new, iscol_new;
188782094794SBarry Smith   Mat_SeqBAIJ *aij;
188882094794SBarry Smith 
188982094794SBarry Smith   PetscFunctionBegin;
18909566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)mat, &comm));
18919566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
18929566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
189329dcf524SDmitry Karpeev   /* The compression and expansion should be avoided. Doesn't point
189429dcf524SDmitry Karpeev      out errors, might change the indices, hence buggey */
18959566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new));
18969566063dSJacob Faibussowitsch   PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new));
189782094794SBarry Smith 
189882094794SBarry Smith   if (call == MAT_REUSE_MATRIX) {
18999566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse));
19005f80ce2aSJacob Faibussowitsch     PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse");
19019566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse));
190282094794SBarry Smith   } else {
19039566063dSJacob Faibussowitsch     PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse));
190482094794SBarry Smith   }
19059566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&isrow_new));
19069566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&iscol_new));
190782094794SBarry Smith   /*
190882094794SBarry Smith       m - number of local rows
190982094794SBarry Smith       n - number of columns (same on all processors)
191082094794SBarry Smith       rstart - first row in new global matrix generated
191182094794SBarry Smith   */
19129566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
19139566063dSJacob Faibussowitsch   PetscCall(MatGetSize(Mreuse, &m, &n));
191482094794SBarry Smith   m = m / bs;
191582094794SBarry Smith   n = n / bs;
191682094794SBarry Smith 
191782094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
191882094794SBarry Smith     aij = (Mat_SeqBAIJ *)(Mreuse)->data;
191982094794SBarry Smith     ii  = aij->i;
192082094794SBarry Smith     jj  = aij->j;
192182094794SBarry Smith 
192282094794SBarry Smith     /*
192382094794SBarry Smith         Determine the number of non-zeros in the diagonal and off-diagonal
192482094794SBarry Smith         portions of the matrix in order to do correct preallocation
192582094794SBarry Smith     */
192682094794SBarry Smith 
192782094794SBarry Smith     /* first get start and end of "diagonal" columns */
192882094794SBarry Smith     if (csize == PETSC_DECIDE) {
19299566063dSJacob Faibussowitsch       PetscCall(ISGetSize(isrow, &mglobal));
193082094794SBarry Smith       if (mglobal == n * bs) { /* square matrix */
193182094794SBarry Smith         nlocal = m;
193282094794SBarry Smith       } else {
193382094794SBarry Smith         nlocal = n / size + ((n % size) > rank);
193482094794SBarry Smith       }
193582094794SBarry Smith     } else {
193682094794SBarry Smith       nlocal = csize / bs;
193782094794SBarry Smith     }
19389566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm));
193982094794SBarry Smith     rstart = rend - nlocal;
1940aed4548fSBarry Smith     PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n);
194182094794SBarry Smith 
194282094794SBarry Smith     /* next, compute all the lengths */
19439566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens));
194482094794SBarry Smith     for (i = 0; i < m; i++) {
194582094794SBarry Smith       jend = ii[i + 1] - ii[i];
194682094794SBarry Smith       olen = 0;
194782094794SBarry Smith       dlen = 0;
194882094794SBarry Smith       for (j = 0; j < jend; j++) {
194982094794SBarry Smith         if (*jj < rstart || *jj >= rend) olen++;
195082094794SBarry Smith         else dlen++;
195182094794SBarry Smith         jj++;
195282094794SBarry Smith       }
195382094794SBarry Smith       olens[i] = olen;
195482094794SBarry Smith       dlens[i] = dlen;
195582094794SBarry Smith     }
19569566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, &M));
19579566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n));
19589566063dSJacob Faibussowitsch     PetscCall(MatSetType(M, ((PetscObject)mat)->type_name));
19599566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19609566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens));
19619566063dSJacob Faibussowitsch     PetscCall(PetscFree2(dlens, olens));
196282094794SBarry Smith   } else {
196382094794SBarry Smith     PetscInt ml, nl;
196482094794SBarry Smith 
196582094794SBarry Smith     M = *newmat;
19669566063dSJacob Faibussowitsch     PetscCall(MatGetLocalSize(M, &ml, &nl));
19675f80ce2aSJacob Faibussowitsch     PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request");
19689566063dSJacob Faibussowitsch     PetscCall(MatZeroEntries(M));
196982094794SBarry Smith     /*
197082094794SBarry Smith          The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly,
197182094794SBarry Smith        rather than the slower MatSetValues().
197282094794SBarry Smith     */
197382094794SBarry Smith     M->was_assembled = PETSC_TRUE;
197482094794SBarry Smith     M->assembled     = PETSC_FALSE;
197582094794SBarry Smith   }
19769566063dSJacob Faibussowitsch   PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE));
19779566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(M, &rstart, &rend));
197882094794SBarry Smith   aij = (Mat_SeqBAIJ *)(Mreuse)->data;
197982094794SBarry Smith   ii  = aij->i;
198082094794SBarry Smith   jj  = aij->j;
198182094794SBarry Smith   aa  = aij->a;
198282094794SBarry Smith   for (i = 0; i < m; i++) {
198382094794SBarry Smith     row   = rstart / bs + i;
198482094794SBarry Smith     nz    = ii[i + 1] - ii[i];
19859371c9d4SSatish Balay     cwork = jj;
19869371c9d4SSatish Balay     jj += nz;
19879371c9d4SSatish Balay     vwork = aa;
19889371c9d4SSatish Balay     aa += nz * bs * bs;
19899566063dSJacob Faibussowitsch     PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES));
199082094794SBarry Smith   }
199182094794SBarry Smith 
19929566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY));
19939566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY));
199482094794SBarry Smith   *newmat = M;
199582094794SBarry Smith 
199682094794SBarry Smith   /* save submatrix used in processor for next request */
199782094794SBarry Smith   if (call == MAT_INITIAL_MATRIX) {
19989566063dSJacob Faibussowitsch     PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse));
19999566063dSJacob Faibussowitsch     PetscCall(PetscObjectDereference((PetscObject)Mreuse));
200082094794SBarry Smith   }
200182094794SBarry Smith   PetscFunctionReturn(0);
200282094794SBarry Smith }
200382094794SBarry Smith 
20049371c9d4SSatish Balay PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) {
200582094794SBarry Smith   MPI_Comm        comm, pcomm;
2006a0a83eb5SRémi Lacroix   PetscInt        clocal_size, nrows;
200782094794SBarry Smith   const PetscInt *rows;
2008dbf0e21dSBarry Smith   PetscMPIInt     size;
2009a0a83eb5SRémi Lacroix   IS              crowp, lcolp;
201082094794SBarry Smith 
201182094794SBarry Smith   PetscFunctionBegin;
20129566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)A, &comm));
201382094794SBarry Smith   /* make a collective version of 'rowp' */
20149566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm));
201582094794SBarry Smith   if (pcomm == comm) {
201682094794SBarry Smith     crowp = rowp;
201782094794SBarry Smith   } else {
20189566063dSJacob Faibussowitsch     PetscCall(ISGetSize(rowp, &nrows));
20199566063dSJacob Faibussowitsch     PetscCall(ISGetIndices(rowp, &rows));
20209566063dSJacob Faibussowitsch     PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp));
20219566063dSJacob Faibussowitsch     PetscCall(ISRestoreIndices(rowp, &rows));
202282094794SBarry Smith   }
20239566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(crowp));
2024a0a83eb5SRémi Lacroix   /* make a local version of 'colp' */
20259566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm));
20269566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(pcomm, &size));
2027dbf0e21dSBarry Smith   if (size == 1) {
202882094794SBarry Smith     lcolp = colp;
202982094794SBarry Smith   } else {
20309566063dSJacob Faibussowitsch     PetscCall(ISAllGather(colp, &lcolp));
203182094794SBarry Smith   }
20329566063dSJacob Faibussowitsch   PetscCall(ISSetPermutation(lcolp));
203375f6568bSJed Brown   /* now we just get the submatrix */
20349566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(A, NULL, &clocal_size));
20359566063dSJacob Faibussowitsch   PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B));
2036a0a83eb5SRémi Lacroix   /* clean up */
2037*48a46eb9SPierre Jolivet   if (pcomm != comm) PetscCall(ISDestroy(&crowp));
2038*48a46eb9SPierre Jolivet   if (size > 1) PetscCall(ISDestroy(&lcolp));
203982094794SBarry Smith   PetscFunctionReturn(0);
204082094794SBarry Smith }
204182094794SBarry Smith 
20429371c9d4SSatish Balay PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) {
20438c7482ecSBarry Smith   Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data;
20448c7482ecSBarry Smith   Mat_SeqBAIJ *B    = (Mat_SeqBAIJ *)baij->B->data;
20458c7482ecSBarry Smith 
20468c7482ecSBarry Smith   PetscFunctionBegin;
204726fbe8dcSKarl Rupp   if (nghosts) *nghosts = B->nbs;
204826fbe8dcSKarl Rupp   if (ghosts) *ghosts = baij->garray;
20498c7482ecSBarry Smith   PetscFunctionReturn(0);
20508c7482ecSBarry Smith }
20518c7482ecSBarry Smith 
20529371c9d4SSatish Balay PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) {
2053f6d58c54SBarry Smith   Mat          B;
2054f6d58c54SBarry Smith   Mat_MPIBAIJ *a  = (Mat_MPIBAIJ *)A->data;
2055f6d58c54SBarry Smith   Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data;
2056f6d58c54SBarry Smith   Mat_SeqAIJ  *b;
2057f4259b30SLisandro Dalcin   PetscMPIInt  size, rank, *recvcounts = NULL, *displs = NULL;
2058f6d58c54SBarry Smith   PetscInt     sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs;
2059f6d58c54SBarry Smith   PetscInt     m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf;
2060f6d58c54SBarry Smith 
2061f6d58c54SBarry Smith   PetscFunctionBegin;
20629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size));
20639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank));
2064f6d58c54SBarry Smith 
2065f6d58c54SBarry Smith   /* ----------------------------------------------------------------
2066f6d58c54SBarry Smith      Tell every processor the number of nonzeros per row
2067f6d58c54SBarry Smith   */
20689566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(A->rmap->N / bs, &lens));
20699371c9d4SSatish Balay   for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) { lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; }
20709566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(2 * size, &recvcounts));
2071f6d58c54SBarry Smith   displs = recvcounts + size;
2072f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2073f6d58c54SBarry Smith     recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs;
2074f6d58c54SBarry Smith     displs[i]     = A->rmap->range[i] / bs;
2075f6d58c54SBarry Smith   }
20769566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
2077f6d58c54SBarry Smith   /* ---------------------------------------------------------------
2078f6d58c54SBarry Smith      Create the sequential matrix of the same type as the local block diagonal
2079f6d58c54SBarry Smith   */
20809566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &B));
20819566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE));
20829566063dSJacob Faibussowitsch   PetscCall(MatSetType(B, MATSEQAIJ));
20839566063dSJacob Faibussowitsch   PetscCall(MatSeqAIJSetPreallocation(B, 0, lens));
2084f6d58c54SBarry Smith   b = (Mat_SeqAIJ *)B->data;
2085f6d58c54SBarry Smith 
2086f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2087f6d58c54SBarry Smith     Copy my part of matrix column indices over
2088f6d58c54SBarry Smith   */
2089f6d58c54SBarry Smith   sendcount  = ad->nz + bd->nz;
2090f6d58c54SBarry Smith   jsendbuf   = b->j + b->i[rstarts[rank] / bs];
2091f6d58c54SBarry Smith   a_jsendbuf = ad->j;
2092f6d58c54SBarry Smith   b_jsendbuf = bd->j;
2093f6d58c54SBarry Smith   n          = A->rmap->rend / bs - A->rmap->rstart / bs;
2094f6d58c54SBarry Smith   cnt        = 0;
2095f6d58c54SBarry Smith   for (i = 0; i < n; i++) {
2096f6d58c54SBarry Smith     /* put in lower diagonal portion */
2097f6d58c54SBarry Smith     m = bd->i[i + 1] - bd->i[i];
2098f6d58c54SBarry Smith     while (m > 0) {
2099f6d58c54SBarry Smith       /* is it above diagonal (in bd (compressed) numbering) */
2100f6d58c54SBarry Smith       if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break;
2101f6d58c54SBarry Smith       jsendbuf[cnt++] = garray[*b_jsendbuf++];
2102f6d58c54SBarry Smith       m--;
2103f6d58c54SBarry Smith     }
2104f6d58c54SBarry Smith 
2105f6d58c54SBarry Smith     /* put in diagonal portion */
21069371c9d4SSatish Balay     for (j = ad->i[i]; j < ad->i[i + 1]; j++) { jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; }
2107f6d58c54SBarry Smith 
2108f6d58c54SBarry Smith     /* put in upper diagonal portion */
21099371c9d4SSatish Balay     while (m-- > 0) { jsendbuf[cnt++] = garray[*b_jsendbuf++]; }
2110f6d58c54SBarry Smith   }
21115f80ce2aSJacob Faibussowitsch   PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt);
2112f6d58c54SBarry Smith 
2113f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2114f6d58c54SBarry Smith     Gather all column indices to all processors
2115f6d58c54SBarry Smith   */
2116f6d58c54SBarry Smith   for (i = 0; i < size; i++) {
2117f6d58c54SBarry Smith     recvcounts[i] = 0;
21189371c9d4SSatish Balay     for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) { recvcounts[i] += lens[j]; }
2119f6d58c54SBarry Smith   }
2120f6d58c54SBarry Smith   displs[0] = 0;
21219371c9d4SSatish Balay   for (i = 1; i < size; i++) { displs[i] = displs[i - 1] + recvcounts[i - 1]; }
21229566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A)));
2123f6d58c54SBarry Smith   /*--------------------------------------------------------------------
2124f6d58c54SBarry Smith     Assemble the matrix into useable form (note numerical values not yet set)
2125f6d58c54SBarry Smith   */
2126f6d58c54SBarry Smith   /* set the b->ilen (length of each row) values */
21279566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs));
2128f6d58c54SBarry Smith   /* set the b->i indices */
2129f6d58c54SBarry Smith   b->i[0] = 0;
21309371c9d4SSatish Balay   for (i = 1; i <= A->rmap->N / bs; i++) { b->i[i] = b->i[i - 1] + lens[i - 1]; }
21319566063dSJacob Faibussowitsch   PetscCall(PetscFree(lens));
21329566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
21339566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
21349566063dSJacob Faibussowitsch   PetscCall(PetscFree(recvcounts));
2135f6d58c54SBarry Smith 
2136b94d7dedSBarry Smith   PetscCall(MatPropagateSymmetryOptions(A, B));
2137f6d58c54SBarry Smith   *newmat = B;
2138f6d58c54SBarry Smith   PetscFunctionReturn(0);
2139f6d58c54SBarry Smith }
2140f6d58c54SBarry Smith 
21419371c9d4SSatish Balay PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) {
2142b1a666ecSBarry Smith   Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data;
2143f4259b30SLisandro Dalcin   Vec          bb1 = NULL;
2144b1a666ecSBarry Smith 
2145b1a666ecSBarry Smith   PetscFunctionBegin;
2146b1a666ecSBarry Smith   if (flag == SOR_APPLY_UPPER) {
21479566063dSJacob Faibussowitsch     PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2148b1a666ecSBarry Smith     PetscFunctionReturn(0);
2149b1a666ecSBarry Smith   }
2150b1a666ecSBarry Smith 
2151*48a46eb9SPierre Jolivet   if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1));
21524e980039SJed Brown 
2153b1a666ecSBarry Smith   if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) {
2154b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21559566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2156b1a666ecSBarry Smith       its--;
2157b1a666ecSBarry Smith     }
2158b1a666ecSBarry Smith 
2159b1a666ecSBarry Smith     while (its--) {
21609566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21619566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2162b1a666ecSBarry Smith 
2163b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21649566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21659566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2166b1a666ecSBarry Smith 
2167b1a666ecSBarry Smith       /* local sweep */
21689566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx));
2169b1a666ecSBarry Smith     }
2170b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_FORWARD_SWEEP) {
2171b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21729566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2173b1a666ecSBarry Smith       its--;
2174b1a666ecSBarry Smith     }
2175b1a666ecSBarry Smith     while (its--) {
21769566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21779566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2178b1a666ecSBarry Smith 
2179b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21809566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21819566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2182b1a666ecSBarry Smith 
2183b1a666ecSBarry Smith       /* local sweep */
21849566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx));
2185b1a666ecSBarry Smith     }
2186b1a666ecSBarry Smith   } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) {
2187b1a666ecSBarry Smith     if (flag & SOR_ZERO_INITIAL_GUESS) {
21889566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx));
2189b1a666ecSBarry Smith       its--;
2190b1a666ecSBarry Smith     }
2191b1a666ecSBarry Smith     while (its--) {
21929566063dSJacob Faibussowitsch       PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
21939566063dSJacob Faibussowitsch       PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD));
2194b1a666ecSBarry Smith 
2195b1a666ecSBarry Smith       /* update rhs: bb1 = bb - B*x */
21969566063dSJacob Faibussowitsch       PetscCall(VecScale(mat->lvec, -1.0));
21979566063dSJacob Faibussowitsch       PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1));
2198b1a666ecSBarry Smith 
2199b1a666ecSBarry Smith       /* local sweep */
22009566063dSJacob Faibussowitsch       PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx));
2201b1a666ecSBarry Smith     }
2202ce94432eSBarry Smith   } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported");
2203b1a666ecSBarry Smith 
22049566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&bb1));
2205b1a666ecSBarry Smith   PetscFunctionReturn(0);
2206b1a666ecSBarry Smith }
2207b1a666ecSBarry Smith 
22089371c9d4SSatish Balay PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) {
220947f7623dSRémi Lacroix   Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data;
2210a873a8cdSSam Reynolds   PetscInt     m, N, i, *garray = aij->garray;
221147f7623dSRémi Lacroix   PetscInt     ib, jb, bs = A->rmap->bs;
221247f7623dSRémi Lacroix   Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data;
221347f7623dSRémi Lacroix   MatScalar   *a_val = a_aij->a;
221447f7623dSRémi Lacroix   Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data;
221547f7623dSRémi Lacroix   MatScalar   *b_val = b_aij->a;
221647f7623dSRémi Lacroix   PetscReal   *work;
221747f7623dSRémi Lacroix 
221847f7623dSRémi Lacroix   PetscFunctionBegin;
22199566063dSJacob Faibussowitsch   PetscCall(MatGetSize(A, &m, &N));
22209566063dSJacob Faibussowitsch   PetscCall(PetscCalloc1(N, &work));
2221857cbf51SRichard Tran Mills   if (type == NORM_2) {
222247f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
222347f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
222447f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
222547f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val);
222647f7623dSRémi Lacroix           a_val++;
222747f7623dSRémi Lacroix         }
222847f7623dSRémi Lacroix       }
222947f7623dSRémi Lacroix     }
223047f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
223147f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
223247f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
223347f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val);
223447f7623dSRémi Lacroix           b_val++;
223547f7623dSRémi Lacroix         }
223647f7623dSRémi Lacroix       }
223747f7623dSRémi Lacroix     }
2238857cbf51SRichard Tran Mills   } else if (type == NORM_1) {
223947f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
224047f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
224147f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
224247f7623dSRémi Lacroix           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val);
224347f7623dSRémi Lacroix           a_val++;
224447f7623dSRémi Lacroix         }
224547f7623dSRémi Lacroix       }
224647f7623dSRémi Lacroix     }
224747f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
224847f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
224947f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
225047f7623dSRémi Lacroix           work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val);
225147f7623dSRémi Lacroix           b_val++;
225247f7623dSRémi Lacroix         }
225347f7623dSRémi Lacroix       }
225447f7623dSRémi Lacroix     }
2255857cbf51SRichard Tran Mills   } else if (type == NORM_INFINITY) {
225647f7623dSRémi Lacroix     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
225747f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
225847f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
225947f7623dSRémi Lacroix           int col   = A->cmap->rstart + a_aij->j[i] * bs + jb;
226047f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]);
226147f7623dSRémi Lacroix           a_val++;
226247f7623dSRémi Lacroix         }
226347f7623dSRémi Lacroix       }
226447f7623dSRémi Lacroix     }
226547f7623dSRémi Lacroix     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
226647f7623dSRémi Lacroix       for (jb = 0; jb < bs; jb++) {
226747f7623dSRémi Lacroix         for (ib = 0; ib < bs; ib++) {
226847f7623dSRémi Lacroix           int col   = garray[b_aij->j[i]] * bs + jb;
226947f7623dSRémi Lacroix           work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]);
227047f7623dSRémi Lacroix           b_val++;
227147f7623dSRémi Lacroix         }
227247f7623dSRémi Lacroix       }
227347f7623dSRémi Lacroix     }
2274857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) {
2275a873a8cdSSam Reynolds     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2276a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2277a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2278857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val);
2279a873a8cdSSam Reynolds           a_val++;
2280a873a8cdSSam Reynolds         }
2281a873a8cdSSam Reynolds       }
2282a873a8cdSSam Reynolds     }
2283a873a8cdSSam Reynolds     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2284a873a8cdSSam Reynolds       for (jb = 0; jb < bs; jb++) {
2285a873a8cdSSam Reynolds         for (ib = 0; ib < bs; ib++) {
2286857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val);
2287a873a8cdSSam Reynolds           b_val++;
2288a873a8cdSSam Reynolds         }
2289a873a8cdSSam Reynolds       }
2290a873a8cdSSam Reynolds     }
2291857cbf51SRichard Tran Mills   } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2292857cbf51SRichard Tran Mills     for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) {
2293857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2294857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2295857cbf51SRichard Tran Mills           work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val);
2296857cbf51SRichard Tran Mills           a_val++;
2297857cbf51SRichard Tran Mills         }
2298857cbf51SRichard Tran Mills       }
2299857cbf51SRichard Tran Mills     }
2300857cbf51SRichard Tran Mills     for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) {
2301857cbf51SRichard Tran Mills       for (jb = 0; jb < bs; jb++) {
2302857cbf51SRichard Tran Mills         for (ib = 0; ib < bs; ib++) {
2303857cbf51SRichard Tran Mills           work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val);
2304857cbf51SRichard Tran Mills           b_val++;
2305857cbf51SRichard Tran Mills         }
2306857cbf51SRichard Tran Mills       }
2307857cbf51SRichard Tran Mills     }
2308857cbf51SRichard Tran Mills   } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type");
2309857cbf51SRichard Tran Mills   if (type == NORM_INFINITY) {
23101c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A)));
231147f7623dSRémi Lacroix   } else {
23121c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A)));
231347f7623dSRémi Lacroix   }
23149566063dSJacob Faibussowitsch   PetscCall(PetscFree(work));
2315857cbf51SRichard Tran Mills   if (type == NORM_2) {
2316a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]);
2317857cbf51SRichard Tran Mills   } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) {
2318a873a8cdSSam Reynolds     for (i = 0; i < N; i++) reductions[i] /= m;
231947f7623dSRémi Lacroix   }
232047f7623dSRémi Lacroix   PetscFunctionReturn(0);
232147f7623dSRémi Lacroix }
232247f7623dSRémi Lacroix 
23239371c9d4SSatish Balay PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) {
2324bbead8a2SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
2325bbead8a2SBarry Smith 
2326bbead8a2SBarry Smith   PetscFunctionBegin;
23279566063dSJacob Faibussowitsch   PetscCall(MatInvertBlockDiagonal(a->A, values));
23287b6c816cSBarry Smith   A->factorerrortype             = a->A->factorerrortype;
23297b6c816cSBarry Smith   A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value;
23307b6c816cSBarry Smith   A->factorerror_zeropivot_row   = a->A->factorerror_zeropivot_row;
2331bbead8a2SBarry Smith   PetscFunctionReturn(0);
2332bbead8a2SBarry Smith }
2333bbead8a2SBarry Smith 
23349371c9d4SSatish Balay PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) {
23357d68702bSBarry Smith   Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data;
23366f33a894SBarry Smith   Mat_SeqBAIJ *aij  = (Mat_SeqBAIJ *)maij->A->data;
23377d68702bSBarry Smith 
23387d68702bSBarry Smith   PetscFunctionBegin;
23396f33a894SBarry Smith   if (!Y->preallocated) {
23409566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL));
23416f33a894SBarry Smith   } else if (!aij->nz) {
2342b83222d8SBarry Smith     PetscInt nonew = aij->nonew;
23439566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL));
2344b83222d8SBarry Smith     aij->nonew = nonew;
23457d68702bSBarry Smith   }
23469566063dSJacob Faibussowitsch   PetscCall(MatShift_Basic(Y, a));
23477d68702bSBarry Smith   PetscFunctionReturn(0);
23487d68702bSBarry Smith }
23498c7482ecSBarry Smith 
23509371c9d4SSatish Balay PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) {
23513b49f96aSBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
23523b49f96aSBarry Smith 
23533b49f96aSBarry Smith   PetscFunctionBegin;
23545f80ce2aSJacob Faibussowitsch   PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices");
23559566063dSJacob Faibussowitsch   PetscCall(MatMissingDiagonal(a->A, missing, d));
23563b49f96aSBarry Smith   if (d) {
23573b49f96aSBarry Smith     PetscInt rstart;
23589566063dSJacob Faibussowitsch     PetscCall(MatGetOwnershipRange(A, &rstart, NULL));
23593b49f96aSBarry Smith     *d += rstart / A->rmap->bs;
23603b49f96aSBarry Smith   }
23613b49f96aSBarry Smith   PetscFunctionReturn(0);
23623b49f96aSBarry Smith }
23633b49f96aSBarry Smith 
23649371c9d4SSatish Balay PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) {
2365a5b7ff6bSBarry Smith   PetscFunctionBegin;
2366a5b7ff6bSBarry Smith   *a = ((Mat_MPIBAIJ *)A->data)->A;
2367a5b7ff6bSBarry Smith   PetscFunctionReturn(0);
2368a5b7ff6bSBarry Smith }
2369a5b7ff6bSBarry Smith 
237079bdfe76SSatish Balay /* -------------------------------------------------------------------*/
23713964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ,
2372cc2dc46cSBarry Smith                                        MatGetRow_MPIBAIJ,
2373cc2dc46cSBarry Smith                                        MatRestoreRow_MPIBAIJ,
2374cc2dc46cSBarry Smith                                        MatMult_MPIBAIJ,
237597304618SKris Buschelman                                        /* 4*/ MatMultAdd_MPIBAIJ,
23767c922b88SBarry Smith                                        MatMultTranspose_MPIBAIJ,
23777c922b88SBarry Smith                                        MatMultTransposeAdd_MPIBAIJ,
2378f4259b30SLisandro Dalcin                                        NULL,
2379f4259b30SLisandro Dalcin                                        NULL,
2380f4259b30SLisandro Dalcin                                        NULL,
2381f4259b30SLisandro Dalcin                                        /*10*/ NULL,
2382f4259b30SLisandro Dalcin                                        NULL,
2383f4259b30SLisandro Dalcin                                        NULL,
2384b1a666ecSBarry Smith                                        MatSOR_MPIBAIJ,
2385cc2dc46cSBarry Smith                                        MatTranspose_MPIBAIJ,
238697304618SKris Buschelman                                        /*15*/ MatGetInfo_MPIBAIJ,
23877fc3c18eSBarry Smith                                        MatEqual_MPIBAIJ,
2388cc2dc46cSBarry Smith                                        MatGetDiagonal_MPIBAIJ,
2389cc2dc46cSBarry Smith                                        MatDiagonalScale_MPIBAIJ,
2390cc2dc46cSBarry Smith                                        MatNorm_MPIBAIJ,
239197304618SKris Buschelman                                        /*20*/ MatAssemblyBegin_MPIBAIJ,
2392cc2dc46cSBarry Smith                                        MatAssemblyEnd_MPIBAIJ,
2393cc2dc46cSBarry Smith                                        MatSetOption_MPIBAIJ,
2394cc2dc46cSBarry Smith                                        MatZeroEntries_MPIBAIJ,
2395d519adbfSMatthew Knepley                                        /*24*/ MatZeroRows_MPIBAIJ,
2396f4259b30SLisandro Dalcin                                        NULL,
2397f4259b30SLisandro Dalcin                                        NULL,
2398f4259b30SLisandro Dalcin                                        NULL,
2399f4259b30SLisandro Dalcin                                        NULL,
24004994cf47SJed Brown                                        /*29*/ MatSetUp_MPIBAIJ,
2401f4259b30SLisandro Dalcin                                        NULL,
2402f4259b30SLisandro Dalcin                                        NULL,
2403a5b7ff6bSBarry Smith                                        MatGetDiagonalBlock_MPIBAIJ,
2404f4259b30SLisandro Dalcin                                        NULL,
2405d519adbfSMatthew Knepley                                        /*34*/ MatDuplicate_MPIBAIJ,
2406f4259b30SLisandro Dalcin                                        NULL,
2407f4259b30SLisandro Dalcin                                        NULL,
2408f4259b30SLisandro Dalcin                                        NULL,
2409f4259b30SLisandro Dalcin                                        NULL,
2410d519adbfSMatthew Knepley                                        /*39*/ MatAXPY_MPIBAIJ,
24117dae84e0SHong Zhang                                        MatCreateSubMatrices_MPIBAIJ,
2412cc2dc46cSBarry Smith                                        MatIncreaseOverlap_MPIBAIJ,
2413cc2dc46cSBarry Smith                                        MatGetValues_MPIBAIJ,
24143c896bc6SHong Zhang                                        MatCopy_MPIBAIJ,
2415f4259b30SLisandro Dalcin                                        /*44*/ NULL,
2416cc2dc46cSBarry Smith                                        MatScale_MPIBAIJ,
24177d68702bSBarry Smith                                        MatShift_MPIBAIJ,
2418f4259b30SLisandro Dalcin                                        NULL,
24196f0a72daSMatthew G. Knepley                                        MatZeroRowsColumns_MPIBAIJ,
2420f4259b30SLisandro Dalcin                                        /*49*/ NULL,
2421f4259b30SLisandro Dalcin                                        NULL,
2422f4259b30SLisandro Dalcin                                        NULL,
2423f4259b30SLisandro Dalcin                                        NULL,
2424f4259b30SLisandro Dalcin                                        NULL,
242593dfae19SHong Zhang                                        /*54*/ MatFDColoringCreate_MPIXAIJ,
2426f4259b30SLisandro Dalcin                                        NULL,
2427cc2dc46cSBarry Smith                                        MatSetUnfactored_MPIBAIJ,
242882094794SBarry Smith                                        MatPermute_MPIBAIJ,
2429cc2dc46cSBarry Smith                                        MatSetValuesBlocked_MPIBAIJ,
24307dae84e0SHong Zhang                                        /*59*/ MatCreateSubMatrix_MPIBAIJ,
2431f14a1c24SBarry Smith                                        MatDestroy_MPIBAIJ,
2432f14a1c24SBarry Smith                                        MatView_MPIBAIJ,
2433f4259b30SLisandro Dalcin                                        NULL,
2434f4259b30SLisandro Dalcin                                        NULL,
2435f4259b30SLisandro Dalcin                                        /*64*/ NULL,
2436f4259b30SLisandro Dalcin                                        NULL,
2437f4259b30SLisandro Dalcin                                        NULL,
2438f4259b30SLisandro Dalcin                                        NULL,
2439f4259b30SLisandro Dalcin                                        NULL,
2440d519adbfSMatthew Knepley                                        /*69*/ MatGetRowMaxAbs_MPIBAIJ,
2441f4259b30SLisandro Dalcin                                        NULL,
2442f4259b30SLisandro Dalcin                                        NULL,
2443f4259b30SLisandro Dalcin                                        NULL,
2444f4259b30SLisandro Dalcin                                        NULL,
2445f4259b30SLisandro Dalcin                                        /*74*/ NULL,
2446f6d58c54SBarry Smith                                        MatFDColoringApply_BAIJ,
2447f4259b30SLisandro Dalcin                                        NULL,
2448f4259b30SLisandro Dalcin                                        NULL,
2449f4259b30SLisandro Dalcin                                        NULL,
2450f4259b30SLisandro Dalcin                                        /*79*/ NULL,
2451f4259b30SLisandro Dalcin                                        NULL,
2452f4259b30SLisandro Dalcin                                        NULL,
2453f4259b30SLisandro Dalcin                                        NULL,
24545bba2384SShri Abhyankar                                        MatLoad_MPIBAIJ,
2455f4259b30SLisandro Dalcin                                        /*84*/ NULL,
2456f4259b30SLisandro Dalcin                                        NULL,
2457f4259b30SLisandro Dalcin                                        NULL,
2458f4259b30SLisandro Dalcin                                        NULL,
2459f4259b30SLisandro Dalcin                                        NULL,
2460f4259b30SLisandro Dalcin                                        /*89*/ NULL,
2461f4259b30SLisandro Dalcin                                        NULL,
2462f4259b30SLisandro Dalcin                                        NULL,
2463f4259b30SLisandro Dalcin                                        NULL,
2464f4259b30SLisandro Dalcin                                        NULL,
2465f4259b30SLisandro Dalcin                                        /*94*/ NULL,
2466f4259b30SLisandro Dalcin                                        NULL,
2467f4259b30SLisandro Dalcin                                        NULL,
2468f4259b30SLisandro Dalcin                                        NULL,
2469f4259b30SLisandro Dalcin                                        NULL,
2470f4259b30SLisandro Dalcin                                        /*99*/ NULL,
2471f4259b30SLisandro Dalcin                                        NULL,
2472f4259b30SLisandro Dalcin                                        NULL,
24732726fb6dSPierre Jolivet                                        MatConjugate_MPIBAIJ,
2474f4259b30SLisandro Dalcin                                        NULL,
2475f4259b30SLisandro Dalcin                                        /*104*/ NULL,
247699cafbc1SBarry Smith                                        MatRealPart_MPIBAIJ,
24778c7482ecSBarry Smith                                        MatImaginaryPart_MPIBAIJ,
2478f4259b30SLisandro Dalcin                                        NULL,
2479f4259b30SLisandro Dalcin                                        NULL,
2480f4259b30SLisandro Dalcin                                        /*109*/ NULL,
2481f4259b30SLisandro Dalcin                                        NULL,
2482f4259b30SLisandro Dalcin                                        NULL,
2483f4259b30SLisandro Dalcin                                        NULL,
24843b49f96aSBarry Smith                                        MatMissingDiagonal_MPIBAIJ,
2485d1adec66SJed Brown                                        /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ,
2486f4259b30SLisandro Dalcin                                        NULL,
24874683f7a4SShri Abhyankar                                        MatGetGhosts_MPIBAIJ,
2488f4259b30SLisandro Dalcin                                        NULL,
2489f4259b30SLisandro Dalcin                                        NULL,
2490f4259b30SLisandro Dalcin                                        /*119*/ NULL,
2491f4259b30SLisandro Dalcin                                        NULL,
2492f4259b30SLisandro Dalcin                                        NULL,
2493f4259b30SLisandro Dalcin                                        NULL,
2494e8271787SHong Zhang                                        MatGetMultiProcBlock_MPIBAIJ,
2495f4259b30SLisandro Dalcin                                        /*124*/ NULL,
2496a873a8cdSSam Reynolds                                        MatGetColumnReductions_MPIBAIJ,
24973964eb88SJed Brown                                        MatInvertBlockDiagonal_MPIBAIJ,
2498f4259b30SLisandro Dalcin                                        NULL,
2499f4259b30SLisandro Dalcin                                        NULL,
2500f4259b30SLisandro Dalcin                                        /*129*/ NULL,
2501f4259b30SLisandro Dalcin                                        NULL,
2502f4259b30SLisandro Dalcin                                        NULL,
2503f4259b30SLisandro Dalcin                                        NULL,
2504f4259b30SLisandro Dalcin                                        NULL,
2505f4259b30SLisandro Dalcin                                        /*134*/ NULL,
2506f4259b30SLisandro Dalcin                                        NULL,
2507f4259b30SLisandro Dalcin                                        NULL,
2508f4259b30SLisandro Dalcin                                        NULL,
2509f4259b30SLisandro Dalcin                                        NULL,
251046533700Sstefano_zampini                                        /*139*/ MatSetBlockSizes_Default,
2511f4259b30SLisandro Dalcin                                        NULL,
2512f4259b30SLisandro Dalcin                                        NULL,
2513bdf6f3fcSHong Zhang                                        MatFDColoringSetUp_MPIXAIJ,
2514f4259b30SLisandro Dalcin                                        NULL,
2515d70f29a3SPierre Jolivet                                        /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ,
2516d70f29a3SPierre Jolivet                                        NULL,
2517d70f29a3SPierre Jolivet                                        NULL,
251899a7f59eSMark Adams                                        NULL,
251999a7f59eSMark Adams                                        NULL,
25207fb60732SBarry Smith                                        NULL,
25219371c9d4SSatish Balay                                        /*150*/ NULL};
252279bdfe76SSatish Balay 
2523cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *);
2524c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *);
2525d94109b8SHong Zhang 
25269371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) {
2527b8d659d7SLisandro Dalcin   PetscInt        m, rstart, cstart, cend;
2528f4259b30SLisandro Dalcin   PetscInt        i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL;
2529f4259b30SLisandro Dalcin   const PetscInt *JJ          = NULL;
2530f4259b30SLisandro Dalcin   PetscScalar    *values      = NULL;
2531d47bf9aaSJed Brown   PetscBool       roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented;
25323bd0feecSPierre Jolivet   PetscBool       nooffprocentries;
2533aac34f13SBarry Smith 
2534aac34f13SBarry Smith   PetscFunctionBegin;
25359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->rmap, bs));
25369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetBlockSize(B->cmap, bs));
25379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
25389566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
25399566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2540d0f46423SBarry Smith   m      = B->rmap->n / bs;
2541d0f46423SBarry Smith   rstart = B->rmap->rstart / bs;
2542d0f46423SBarry Smith   cstart = B->cmap->rstart / bs;
2543d0f46423SBarry Smith   cend   = B->cmap->rend / bs;
2544b8d659d7SLisandro Dalcin 
25455f80ce2aSJacob Faibussowitsch   PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]);
25469566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz));
2547aac34f13SBarry Smith   for (i = 0; i < m; i++) {
2548cf12db73SBarry Smith     nz = ii[i + 1] - ii[i];
25495f80ce2aSJacob Faibussowitsch     PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz);
2550b8d659d7SLisandro Dalcin     nz_max = PetscMax(nz_max, nz);
255137cd3c0dSBarry Smith     dlen   = 0;
255237cd3c0dSBarry Smith     olen   = 0;
2553cf12db73SBarry Smith     JJ     = jj + ii[i];
2554b8d659d7SLisandro Dalcin     for (j = 0; j < nz; j++) {
255537cd3c0dSBarry Smith       if (*JJ < cstart || *JJ >= cend) olen++;
255637cd3c0dSBarry Smith       else dlen++;
2557aac34f13SBarry Smith       JJ++;
2558aac34f13SBarry Smith     }
255937cd3c0dSBarry Smith     d_nnz[i] = dlen;
256037cd3c0dSBarry Smith     o_nnz[i] = olen;
2561aac34f13SBarry Smith   }
25629566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz));
25639566063dSJacob Faibussowitsch   PetscCall(PetscFree2(d_nnz, o_nnz));
2564aac34f13SBarry Smith 
2565b8d659d7SLisandro Dalcin   values = (PetscScalar *)V;
2566*48a46eb9SPierre Jolivet   if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values));
2567b8d659d7SLisandro Dalcin   for (i = 0; i < m; i++) {
2568b8d659d7SLisandro Dalcin     PetscInt        row   = i + rstart;
2569cf12db73SBarry Smith     PetscInt        ncols = ii[i + 1] - ii[i];
2570cf12db73SBarry Smith     const PetscInt *icols = jj + ii[i];
2571bb80cfbbSStefano Zampini     if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */
2572cf12db73SBarry Smith       const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0);
25739566063dSJacob Faibussowitsch       PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES));
25743adadaf3SJed Brown     } else { /* block ordering does not match so we can only insert one block at a time. */
25753adadaf3SJed Brown       PetscInt j;
25763adadaf3SJed Brown       for (j = 0; j < ncols; j++) {
25773adadaf3SJed Brown         const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0);
25789566063dSJacob Faibussowitsch         PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES));
25793adadaf3SJed Brown       }
25803adadaf3SJed Brown     }
2581aac34f13SBarry Smith   }
2582aac34f13SBarry Smith 
25839566063dSJacob Faibussowitsch   if (!V) PetscCall(PetscFree(values));
25843bd0feecSPierre Jolivet   nooffprocentries    = B->nooffprocentries;
25853bd0feecSPierre Jolivet   B->nooffprocentries = PETSC_TRUE;
25869566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
25879566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
25883bd0feecSPierre Jolivet   B->nooffprocentries = nooffprocentries;
25893bd0feecSPierre Jolivet 
25909566063dSJacob Faibussowitsch   PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE));
2591aac34f13SBarry Smith   PetscFunctionReturn(0);
2592aac34f13SBarry Smith }
2593aac34f13SBarry Smith 
2594aac34f13SBarry Smith /*@C
2595664954b6SBarry Smith    MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values
2596aac34f13SBarry Smith 
2597d083f849SBarry Smith    Collective
2598aac34f13SBarry Smith 
2599aac34f13SBarry Smith    Input Parameters:
26001c4f3114SJed Brown +  B - the matrix
2601dfb205c3SBarry Smith .  bs - the block size
2602aac34f13SBarry Smith .  i - the indices into j for the start of each local row (starts with zero)
2603aac34f13SBarry Smith .  j - the column indices for each local row (starts with zero) these must be sorted for each row
2604aac34f13SBarry Smith -  v - optional values in the matrix
2605aac34f13SBarry Smith 
2606664954b6SBarry Smith    Level: advanced
2607aac34f13SBarry Smith 
260895452b02SPatrick Sanan    Notes:
260995452b02SPatrick Sanan     The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED.  For example, C programs
26103adadaf3SJed Brown    may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is
26113adadaf3SJed Brown    over rows within a block and the last index is over columns within a block row.  Fortran programs will likely set
26123adadaf3SJed Brown    MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a
26133adadaf3SJed Brown    block column and the second index is over columns within a block.
26143adadaf3SJed Brown 
2615664954b6SBarry Smith    Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well
2616664954b6SBarry Smith 
2617db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ`
2618aac34f13SBarry Smith @*/
26199371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) {
2620aac34f13SBarry Smith   PetscFunctionBegin;
26216ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
26226ba663aaSJed Brown   PetscValidType(B, 1);
26236ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2624cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v));
2625aac34f13SBarry Smith   PetscFunctionReturn(0);
2626aac34f13SBarry Smith }
2627aac34f13SBarry Smith 
26289371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) {
2629a23d5eceSKris Buschelman   Mat_MPIBAIJ *b;
2630535b19f3SBarry Smith   PetscInt     i;
26315d2a9ed1SStefano Zampini   PetscMPIInt  size;
2632a23d5eceSKris Buschelman 
2633a23d5eceSKris Buschelman   PetscFunctionBegin;
26349566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(B, PetscAbs(bs)));
26359566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->rmap));
26369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(B->cmap));
26379566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs));
2638899cda47SBarry Smith 
2639a23d5eceSKris Buschelman   if (d_nnz) {
26409371c9d4SSatish Balay     for (i = 0; i < B->rmap->n / bs; i++) { PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); }
2641a23d5eceSKris Buschelman   }
2642a23d5eceSKris Buschelman   if (o_nnz) {
26439371c9d4SSatish Balay     for (i = 0; i < B->rmap->n / bs; i++) { PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); }
2644a23d5eceSKris Buschelman   }
2645a23d5eceSKris Buschelman 
2646a23d5eceSKris Buschelman   b      = (Mat_MPIBAIJ *)B->data;
2647a23d5eceSKris Buschelman   b->bs2 = bs * bs;
2648d0f46423SBarry Smith   b->mbs = B->rmap->n / bs;
2649d0f46423SBarry Smith   b->nbs = B->cmap->n / bs;
2650d0f46423SBarry Smith   b->Mbs = B->rmap->N / bs;
2651d0f46423SBarry Smith   b->Nbs = B->cmap->N / bs;
2652a23d5eceSKris Buschelman 
26539371c9d4SSatish Balay   for (i = 0; i <= b->size; i++) { b->rangebs[i] = B->rmap->range[i] / bs; }
2654d0f46423SBarry Smith   b->rstartbs = B->rmap->rstart / bs;
2655d0f46423SBarry Smith   b->rendbs   = B->rmap->rend / bs;
2656d0f46423SBarry Smith   b->cstartbs = B->cmap->rstart / bs;
2657d0f46423SBarry Smith   b->cendbs   = B->cmap->rend / bs;
2658a23d5eceSKris Buschelman 
2659cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE)
26609566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&b->colmap));
2661cb7b82ddSBarry Smith #else
26629566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->colmap));
2663cb7b82ddSBarry Smith #endif
26649566063dSJacob Faibussowitsch   PetscCall(PetscFree(b->garray));
26659566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&b->lvec));
26669566063dSJacob Faibussowitsch   PetscCall(VecScatterDestroy(&b->Mvctx));
2667cb7b82ddSBarry Smith 
2668cb7b82ddSBarry Smith   /* Because the B will have been resized we simply destroy it and create a new one each time */
26699566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size));
26709566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&b->B));
26719566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_SELF, &b->B));
26729566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0));
26739566063dSJacob Faibussowitsch   PetscCall(MatSetType(b->B, MATSEQBAIJ));
26749566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->B));
2675cb7b82ddSBarry Smith 
2676526dfc15SBarry Smith   if (!B->preallocated) {
26779566063dSJacob Faibussowitsch     PetscCall(MatCreate(PETSC_COMM_SELF, &b->A));
26789566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n));
26799566063dSJacob Faibussowitsch     PetscCall(MatSetType(b->A, MATSEQBAIJ));
26809566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->A));
26819566063dSJacob Faibussowitsch     PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash));
2682526dfc15SBarry Smith   }
2683a23d5eceSKris Buschelman 
26849566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz));
26859566063dSJacob Faibussowitsch   PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz));
2686526dfc15SBarry Smith   B->preallocated  = PETSC_TRUE;
2687cb7b82ddSBarry Smith   B->was_assembled = PETSC_FALSE;
2688cb7b82ddSBarry Smith   B->assembled     = PETSC_FALSE;
2689a23d5eceSKris Buschelman   PetscFunctionReturn(0);
2690a23d5eceSKris Buschelman }
2691a23d5eceSKris Buschelman 
26927087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec);
26937087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal);
26945bf65638SKris Buschelman 
26959371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) {
269682094794SBarry Smith   Mat_MPIBAIJ    *b = (Mat_MPIBAIJ *)B->data;
269782094794SBarry Smith   Mat_SeqBAIJ    *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data;
269882094794SBarry Smith   PetscInt        M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs;
269982094794SBarry Smith   const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray;
270082094794SBarry Smith 
270182094794SBarry Smith   PetscFunctionBegin;
27029566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(M + 1, &ii));
270382094794SBarry Smith   ii[0] = 0;
270482094794SBarry Smith   for (i = 0; i < M; i++) {
270508401ef6SPierre Jolivet     PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]);
270608401ef6SPierre Jolivet     PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]);
270782094794SBarry Smith     ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i];
27085ee9ba1cSJed Brown     /* remove one from count of matrix has diagonal */
27095ee9ba1cSJed Brown     for (j = id[i]; j < id[i + 1]; j++) {
27109371c9d4SSatish Balay       if (jd[j] == i) {
27119371c9d4SSatish Balay         ii[i + 1]--;
27129371c9d4SSatish Balay         break;
27139371c9d4SSatish Balay       }
27145ee9ba1cSJed Brown     }
271582094794SBarry Smith   }
27169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(ii[M], &jj));
271782094794SBarry Smith   cnt = 0;
271882094794SBarry Smith   for (i = 0; i < M; i++) {
271982094794SBarry Smith     for (j = io[i]; j < io[i + 1]; j++) {
272082094794SBarry Smith       if (garray[jo[j]] > rstart) break;
272182094794SBarry Smith       jj[cnt++] = garray[jo[j]];
272282094794SBarry Smith     }
272382094794SBarry Smith     for (k = id[i]; k < id[i + 1]; k++) {
27249371c9d4SSatish Balay       if (jd[k] != i) { jj[cnt++] = rstart + jd[k]; }
272582094794SBarry Smith     }
27269371c9d4SSatish Balay     for (; j < io[i + 1]; j++) { jj[cnt++] = garray[jo[j]]; }
272782094794SBarry Smith   }
27289566063dSJacob Faibussowitsch   PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj));
272982094794SBarry Smith   PetscFunctionReturn(0);
273082094794SBarry Smith }
273182094794SBarry Smith 
2732c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h>
273362471d69SBarry Smith 
2734cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *);
2735b2573a8aSBarry Smith 
27369371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) {
273762471d69SBarry Smith   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
273885a69837SSatish Balay   Mat_MPIAIJ  *b;
27395f80ce2aSJacob Faibussowitsch   Mat          B;
274062471d69SBarry Smith 
274162471d69SBarry Smith   PetscFunctionBegin;
27425f80ce2aSJacob Faibussowitsch   PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled");
274362471d69SBarry Smith 
27440f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
27450f6d62edSLisandro Dalcin     B = *newmat;
27460f6d62edSLisandro Dalcin   } else {
27479566063dSJacob Faibussowitsch     PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B));
27489566063dSJacob Faibussowitsch     PetscCall(MatSetType(B, MATMPIAIJ));
27499566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N));
27509566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs));
27519566063dSJacob Faibussowitsch     PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL));
27529566063dSJacob Faibussowitsch     PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL));
27530f6d62edSLisandro Dalcin   }
275462471d69SBarry Smith   b = (Mat_MPIAIJ *)B->data;
275562471d69SBarry Smith 
27560f6d62edSLisandro Dalcin   if (reuse == MAT_REUSE_MATRIX) {
27579566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A));
27589566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B));
27590f6d62edSLisandro Dalcin   } else {
27609566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->A));
27619566063dSJacob Faibussowitsch     PetscCall(MatDestroy(&b->B));
27629566063dSJacob Faibussowitsch     PetscCall(MatDisAssemble_MPIBAIJ(A));
27639566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A));
27649566063dSJacob Faibussowitsch     PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B));
27659566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
27669566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
27670f6d62edSLisandro Dalcin   }
27689566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
27699566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
27700f6d62edSLisandro Dalcin 
2771511c6705SHong Zhang   if (reuse == MAT_INPLACE_MATRIX) {
27729566063dSJacob Faibussowitsch     PetscCall(MatHeaderReplace(A, &B));
277362471d69SBarry Smith   } else {
277462471d69SBarry Smith     *newmat = B;
277562471d69SBarry Smith   }
277662471d69SBarry Smith   PetscFunctionReturn(0);
277762471d69SBarry Smith }
277862471d69SBarry Smith 
27790bad9183SKris Buschelman /*MC
2780fafad747SKris Buschelman    MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices.
27810bad9183SKris Buschelman 
27820bad9183SKris Buschelman    Options Database Keys:
27838c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions()
27848c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix
27856679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use  (0 often indicates using BLAS)
278667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor
27870bad9183SKris Buschelman 
27880bad9183SKris Buschelman    Level: beginner
27890cd7f59aSBarry Smith 
27900cd7f59aSBarry Smith    Notes:
27910cd7f59aSBarry Smith     MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no
27920cd7f59aSBarry Smith     space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored
27930bad9183SKris Buschelman 
2794db781477SPatrick Sanan .seealso: `MatCreateBAIJ`
27950bad9183SKris Buschelman M*/
27960bad9183SKris Buschelman 
2797cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *);
2798c0cdd4a1SDahai Guo 
27999371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) {
2800273d9f13SBarry Smith   Mat_MPIBAIJ *b;
280194ae4db5SBarry Smith   PetscBool    flg = PETSC_FALSE;
2802273d9f13SBarry Smith 
2803273d9f13SBarry Smith   PetscFunctionBegin;
28049566063dSJacob Faibussowitsch   PetscCall(PetscNewLog(B, &b));
280582502324SSatish Balay   B->data = (void *)b;
280682502324SSatish Balay 
28079566063dSJacob Faibussowitsch   PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps)));
2808273d9f13SBarry Smith   B->assembled = PETSC_FALSE;
2809273d9f13SBarry Smith 
2810273d9f13SBarry Smith   B->insertmode = NOT_SET_VALUES;
28119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank));
28129566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size));
2813273d9f13SBarry Smith 
2814273d9f13SBarry Smith   /* build local table of row and column ownerships */
28159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(b->size + 1, &b->rangebs));
2816273d9f13SBarry Smith 
2817273d9f13SBarry Smith   /* build cache for off array entries formed */
28189566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash));
281926fbe8dcSKarl Rupp 
2820273d9f13SBarry Smith   b->donotstash  = PETSC_FALSE;
28210298fd71SBarry Smith   b->colmap      = NULL;
28220298fd71SBarry Smith   b->garray      = NULL;
2823273d9f13SBarry Smith   b->roworiented = PETSC_TRUE;
2824273d9f13SBarry Smith 
2825273d9f13SBarry Smith   /* stuff used in block assembly */
2826f4259b30SLisandro Dalcin   b->barray = NULL;
2827273d9f13SBarry Smith 
2828273d9f13SBarry Smith   /* stuff used for matrix vector multiply */
2829f4259b30SLisandro Dalcin   b->lvec  = NULL;
2830f4259b30SLisandro Dalcin   b->Mvctx = NULL;
2831273d9f13SBarry Smith 
2832273d9f13SBarry Smith   /* stuff for MatGetRow() */
2833f4259b30SLisandro Dalcin   b->rowindices   = NULL;
2834f4259b30SLisandro Dalcin   b->rowvalues    = NULL;
2835273d9f13SBarry Smith   b->getrowactive = PETSC_FALSE;
2836273d9f13SBarry Smith 
2837273d9f13SBarry Smith   /* hash table stuff */
2838f4259b30SLisandro Dalcin   b->ht           = NULL;
2839f4259b30SLisandro Dalcin   b->hd           = NULL;
2840273d9f13SBarry Smith   b->ht_size      = 0;
2841273d9f13SBarry Smith   b->ht_flag      = PETSC_FALSE;
2842273d9f13SBarry Smith   b->ht_fact      = 0;
2843273d9f13SBarry Smith   b->ht_total_ct  = 0;
2844273d9f13SBarry Smith   b->ht_insert_ct = 0;
2845273d9f13SBarry Smith 
28467dae84e0SHong Zhang   /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */
28477a868f3eSHong Zhang   b->ijonly = PETSC_FALSE;
28487a868f3eSHong Zhang 
28499566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj));
28509566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ));
28519566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ));
28527ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE)
28539566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE));
28547ea3e4caSstefano_zampini #endif
28559566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ));
28569566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ));
28579566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ));
28589566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ));
28599566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ));
28609566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ));
28619566063dSJacob Faibussowitsch   PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS));
28629566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ));
286394ae4db5SBarry Smith 
2864d0609cedSBarry Smith   PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat");
28659566063dSJacob Faibussowitsch   PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg));
286694ae4db5SBarry Smith   if (flg) {
286794ae4db5SBarry Smith     PetscReal fact = 1.39;
28689566063dSJacob Faibussowitsch     PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE));
28699566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL));
287094ae4db5SBarry Smith     if (fact <= 1.0) fact = 1.39;
28719566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetHashTableFactor(B, fact));
28729566063dSJacob Faibussowitsch     PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact));
287394ae4db5SBarry Smith   }
2874d0609cedSBarry Smith   PetscOptionsEnd();
2875273d9f13SBarry Smith   PetscFunctionReturn(0);
2876273d9f13SBarry Smith }
2877273d9f13SBarry Smith 
2878209238afSKris Buschelman /*MC
2879002d173eSKris Buschelman    MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices.
2880209238afSKris Buschelman 
2881209238afSKris Buschelman    This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator,
2882209238afSKris Buschelman    and MATMPIBAIJ otherwise.
2883209238afSKris Buschelman 
2884209238afSKris Buschelman    Options Database Keys:
2885209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions()
2886209238afSKris Buschelman 
2887209238afSKris Buschelman   Level: beginner
2888209238afSKris Buschelman 
2889c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
2890209238afSKris Buschelman M*/
2891209238afSKris Buschelman 
2892273d9f13SBarry Smith /*@C
2893aac34f13SBarry Smith    MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format
2894273d9f13SBarry Smith    (block compressed row).  For good matrix assembly performance
2895273d9f13SBarry Smith    the user should preallocate the matrix storage by setting the parameters
2896273d9f13SBarry Smith    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
2897273d9f13SBarry Smith    performance can be increased by more than a factor of 50.
2898273d9f13SBarry Smith 
2899273d9f13SBarry Smith    Collective on Mat
2900273d9f13SBarry Smith 
2901273d9f13SBarry Smith    Input Parameters:
29021c4f3114SJed Brown +  B - the matrix
2903bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2904bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
2905273d9f13SBarry Smith .  d_nz  - number of block nonzeros per block row in diagonal portion of local
2906273d9f13SBarry Smith            submatrix  (same for all local rows)
2907273d9f13SBarry Smith .  d_nnz - array containing the number of block nonzeros in the various block rows
2908273d9f13SBarry Smith            of the in diagonal portion of the local (possibly different for each block
29090298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry and
291095742e49SBarry Smith            set it even if it is zero.
2911273d9f13SBarry Smith .  o_nz  - number of block nonzeros per block row in the off-diagonal portion of local
2912273d9f13SBarry Smith            submatrix (same for all local rows).
2913273d9f13SBarry Smith -  o_nnz - array containing the number of nonzeros in the various block rows of the
2914273d9f13SBarry Smith            off-diagonal portion of the local submatrix (possibly different for
29150298fd71SBarry Smith            each block row) or NULL.
2916273d9f13SBarry Smith 
291749a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
2918273d9f13SBarry Smith 
2919273d9f13SBarry Smith    Options Database Keys:
29208c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
292167b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
2922273d9f13SBarry Smith 
2923273d9f13SBarry Smith    Notes:
2924273d9f13SBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
2925273d9f13SBarry Smith    than it must be used on all processors that share the object for that argument.
2926273d9f13SBarry Smith 
2927273d9f13SBarry Smith    Storage Information:
2928273d9f13SBarry Smith    For a square global matrix we define each processor's diagonal portion
2929273d9f13SBarry Smith    to be its local rows and the corresponding columns (a square submatrix);
2930273d9f13SBarry Smith    each processor's off-diagonal portion encompasses the remainder of the
2931273d9f13SBarry Smith    local matrix (a rectangular submatrix).
2932273d9f13SBarry Smith 
2933273d9f13SBarry Smith    The user can specify preallocated storage for the diagonal part of
2934273d9f13SBarry Smith    the local submatrix with either d_nz or d_nnz (not both).  Set
29350298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
2936273d9f13SBarry Smith    memory allocation.  Likewise, specify preallocated storage for the
2937273d9f13SBarry Smith    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
2938273d9f13SBarry Smith 
2939273d9f13SBarry Smith    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
2940273d9f13SBarry Smith    the figure below we depict these three local rows and all columns (0-11).
2941273d9f13SBarry Smith 
2942273d9f13SBarry Smith .vb
2943273d9f13SBarry Smith            0 1 2 3 4 5 6 7 8 9 10 11
2944a4b1a0f6SJed Brown           --------------------------
2945273d9f13SBarry Smith    row 3  |o o o d d d o o o o  o  o
2946273d9f13SBarry Smith    row 4  |o o o d d d o o o o  o  o
2947273d9f13SBarry Smith    row 5  |o o o d d d o o o o  o  o
2948a4b1a0f6SJed Brown           --------------------------
2949273d9f13SBarry Smith .ve
2950273d9f13SBarry Smith 
2951273d9f13SBarry Smith    Thus, any entries in the d locations are stored in the d (diagonal)
2952273d9f13SBarry Smith    submatrix, and any entries in the o locations are stored in the
2953273d9f13SBarry Smith    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
2954273d9f13SBarry Smith    stored simply in the MATSEQBAIJ format for compressed row storage.
2955273d9f13SBarry Smith 
2956273d9f13SBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
2957273d9f13SBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
2958273d9f13SBarry Smith    In general, for PDE problems in which most nonzeros are near the diagonal,
2959273d9f13SBarry Smith    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
2960273d9f13SBarry Smith    or you will get TERRIBLE performance; see the users' manual chapter on
2961273d9f13SBarry Smith    matrices.
2962273d9f13SBarry Smith 
2963aa95bbe8SBarry Smith    You can call MatGetInfo() to get information on how effective the preallocation was;
2964aa95bbe8SBarry Smith    for example the fields mallocs,nz_allocated,nz_used,nz_unneeded;
2965aa95bbe8SBarry Smith    You can also run with the option -info and look for messages with the string
2966aa95bbe8SBarry Smith    malloc in them to see if additional memory allocation was needed.
2967aa95bbe8SBarry Smith 
2968273d9f13SBarry Smith    Level: intermediate
2969273d9f13SBarry Smith 
2970db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()`
2971273d9f13SBarry Smith @*/
29729371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) {
2973273d9f13SBarry Smith   PetscFunctionBegin;
29746ba663aaSJed Brown   PetscValidHeaderSpecific(B, MAT_CLASSID, 1);
29756ba663aaSJed Brown   PetscValidType(B, 1);
29766ba663aaSJed Brown   PetscValidLogicalCollectiveInt(B, bs, 2);
2977cac4c232SBarry Smith   PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz));
2978273d9f13SBarry Smith   PetscFunctionReturn(0);
2979273d9f13SBarry Smith }
2980273d9f13SBarry Smith 
298179bdfe76SSatish Balay /*@C
298269b1f4b7SBarry Smith    MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format
298379bdfe76SSatish Balay    (block compressed row).  For good matrix assembly performance
298479bdfe76SSatish Balay    the user should preallocate the matrix storage by setting the parameters
298579bdfe76SSatish Balay    d_nz (or d_nnz) and o_nz (or o_nnz).  By setting these parameters accurately,
298679bdfe76SSatish Balay    performance can be increased by more than a factor of 50.
298779bdfe76SSatish Balay 
2988d083f849SBarry Smith    Collective
2989db81eaa0SLois Curfman McInnes 
299079bdfe76SSatish Balay    Input Parameters:
2991db81eaa0SLois Curfman McInnes +  comm - MPI communicator
2992bb7ae925SBarry Smith .  bs   - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row
2993bb7ae925SBarry Smith           blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs()
299479bdfe76SSatish Balay .  m - number of local rows (or PETSC_DECIDE to have calculated if M is given)
299592e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
299692e8d321SLois Curfman McInnes            y vector for the matrix-vector product y = Ax.
299792e8d321SLois Curfman McInnes .  n - number of local columns (or PETSC_DECIDE to have calculated if N is given)
299892e8d321SLois Curfman McInnes            This value should be the same as the local size used in creating the
299992e8d321SLois Curfman McInnes            x vector for the matrix-vector product y = Ax.
3000be79a94dSBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3001be79a94dSBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
300247a75d0bSBarry Smith .  d_nz  - number of nonzero blocks per block row in diagonal portion of local
300379bdfe76SSatish Balay            submatrix  (same for all local rows)
300447a75d0bSBarry Smith .  d_nnz - array containing the number of nonzero blocks in the various block rows
300592e8d321SLois Curfman McInnes            of the in diagonal portion of the local (possibly different for each block
30060298fd71SBarry Smith            row) or NULL.  If you plan to factor the matrix you must leave room for the diagonal entry
300795742e49SBarry Smith            and set it even if it is zero.
300847a75d0bSBarry Smith .  o_nz  - number of nonzero blocks per block row in the off-diagonal portion of local
300979bdfe76SSatish Balay            submatrix (same for all local rows).
301047a75d0bSBarry Smith -  o_nnz - array containing the number of nonzero blocks in the various block rows of the
301192e8d321SLois Curfman McInnes            off-diagonal portion of the local submatrix (possibly different for
30120298fd71SBarry Smith            each block row) or NULL.
301379bdfe76SSatish Balay 
301479bdfe76SSatish Balay    Output Parameter:
301579bdfe76SSatish Balay .  A - the matrix
301679bdfe76SSatish Balay 
3017db81eaa0SLois Curfman McInnes    Options Database Keys:
30188c07d4e3SBarry Smith +   -mat_block_size - size of the blocks to use
301967b8a455SSatish Balay -   -mat_use_hash_table <fact> - set hash table factor
30203ffaccefSLois Curfman McInnes 
3021175b88e8SBarry Smith    It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(),
3022f6f02116SRichard Tran Mills    MatXXXXSetPreallocation() paradigm instead of this routine directly.
3023175b88e8SBarry Smith    [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation]
3024175b88e8SBarry Smith 
3025b259b22eSLois Curfman McInnes    Notes:
302649a6f317SBarry Smith    If the *_nnz parameter is given then the *_nz parameter is ignored
302749a6f317SBarry Smith 
302847a75d0bSBarry Smith    A nonzero block is any block that as 1 or more nonzeros in it
302947a75d0bSBarry Smith 
303079bdfe76SSatish Balay    The user MUST specify either the local or global matrix dimensions
303179bdfe76SSatish Balay    (possibly both).
303279bdfe76SSatish Balay 
3033be79a94dSBarry Smith    If PETSC_DECIDE or  PETSC_DETERMINE is used for a particular argument on one processor
3034be79a94dSBarry Smith    than it must be used on all processors that share the object for that argument.
3035be79a94dSBarry Smith 
303679bdfe76SSatish Balay    Storage Information:
303779bdfe76SSatish Balay    For a square global matrix we define each processor's diagonal portion
303879bdfe76SSatish Balay    to be its local rows and the corresponding columns (a square submatrix);
303979bdfe76SSatish Balay    each processor's off-diagonal portion encompasses the remainder of the
304079bdfe76SSatish Balay    local matrix (a rectangular submatrix).
304179bdfe76SSatish Balay 
304279bdfe76SSatish Balay    The user can specify preallocated storage for the diagonal part of
304379bdfe76SSatish Balay    the local submatrix with either d_nz or d_nnz (not both).  Set
30440298fd71SBarry Smith    d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic
304579bdfe76SSatish Balay    memory allocation.  Likewise, specify preallocated storage for the
304679bdfe76SSatish Balay    off-diagonal part of the local submatrix with o_nz or o_nnz (not both).
304779bdfe76SSatish Balay 
304879bdfe76SSatish Balay    Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In
304979bdfe76SSatish Balay    the figure below we depict these three local rows and all columns (0-11).
305079bdfe76SSatish Balay 
3051db81eaa0SLois Curfman McInnes .vb
3052db81eaa0SLois Curfman McInnes            0 1 2 3 4 5 6 7 8 9 10 11
3053a4b1a0f6SJed Brown           --------------------------
3054db81eaa0SLois Curfman McInnes    row 3  |o o o d d d o o o o  o  o
3055db81eaa0SLois Curfman McInnes    row 4  |o o o d d d o o o o  o  o
3056db81eaa0SLois Curfman McInnes    row 5  |o o o d d d o o o o  o  o
3057a4b1a0f6SJed Brown           --------------------------
3058db81eaa0SLois Curfman McInnes .ve
305979bdfe76SSatish Balay 
306079bdfe76SSatish Balay    Thus, any entries in the d locations are stored in the d (diagonal)
306179bdfe76SSatish Balay    submatrix, and any entries in the o locations are stored in the
306279bdfe76SSatish Balay    o (off-diagonal) submatrix.  Note that the d and the o submatrices are
306357b952d6SSatish Balay    stored simply in the MATSEQBAIJ format for compressed row storage.
306479bdfe76SSatish Balay 
3065d64ed03dSBarry Smith    Now d_nz should indicate the number of block nonzeros per row in the d matrix,
3066d64ed03dSBarry Smith    and o_nz should indicate the number of block nonzeros per row in the o matrix.
306779bdfe76SSatish Balay    In general, for PDE problems in which most nonzeros are near the diagonal,
306892e8d321SLois Curfman McInnes    one expects d_nz >> o_nz.   For large problems you MUST preallocate memory
306992e8d321SLois Curfman McInnes    or you will get TERRIBLE performance; see the users' manual chapter on
30706da5968aSLois Curfman McInnes    matrices.
307179bdfe76SSatish Balay 
3072027ccd11SLois Curfman McInnes    Level: intermediate
3073027ccd11SLois Curfman McInnes 
3074db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()`
307579bdfe76SSatish Balay @*/
30769371c9d4SSatish Balay PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) {
3077b24ad042SBarry Smith   PetscMPIInt size;
307879bdfe76SSatish Balay 
3079d64ed03dSBarry Smith   PetscFunctionBegin;
30809566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, A));
30819566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*A, m, n, M, N));
30829566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
3083273d9f13SBarry Smith   if (size > 1) {
30849566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATMPIBAIJ));
30859566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz));
3086273d9f13SBarry Smith   } else {
30879566063dSJacob Faibussowitsch     PetscCall(MatSetType(*A, MATSEQBAIJ));
30889566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz));
30893914022bSBarry Smith   }
30903a40ed3dSBarry Smith   PetscFunctionReturn(0);
309179bdfe76SSatish Balay }
3092026e39d0SSatish Balay 
30939371c9d4SSatish Balay static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) {
30940ac07820SSatish Balay   Mat          mat;
30950ac07820SSatish Balay   Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data;
3096b24ad042SBarry Smith   PetscInt     len = 0;
30970ac07820SSatish Balay 
3098d64ed03dSBarry Smith   PetscFunctionBegin;
3099f4259b30SLisandro Dalcin   *newmat = NULL;
31009566063dSJacob Faibussowitsch   PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat));
31019566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N));
31029566063dSJacob Faibussowitsch   PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name));
31037fff6886SHong Zhang 
3104d5f3da31SBarry Smith   mat->factortype   = matin->factortype;
3105273d9f13SBarry Smith   mat->preallocated = PETSC_TRUE;
31060ac07820SSatish Balay   mat->assembled    = PETSC_TRUE;
31077fff6886SHong Zhang   mat->insertmode   = NOT_SET_VALUES;
31087fff6886SHong Zhang 
3109273d9f13SBarry Smith   a             = (Mat_MPIBAIJ *)mat->data;
3110d0f46423SBarry Smith   mat->rmap->bs = matin->rmap->bs;
31110ac07820SSatish Balay   a->bs2        = oldmat->bs2;
31120ac07820SSatish Balay   a->mbs        = oldmat->mbs;
31130ac07820SSatish Balay   a->nbs        = oldmat->nbs;
31140ac07820SSatish Balay   a->Mbs        = oldmat->Mbs;
31150ac07820SSatish Balay   a->Nbs        = oldmat->Nbs;
31160ac07820SSatish Balay 
31179566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap));
31189566063dSJacob Faibussowitsch   PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap));
3119899cda47SBarry Smith 
31200ac07820SSatish Balay   a->size         = oldmat->size;
31210ac07820SSatish Balay   a->rank         = oldmat->rank;
3122aef5e8e0SSatish Balay   a->donotstash   = oldmat->donotstash;
3123aef5e8e0SSatish Balay   a->roworiented  = oldmat->roworiented;
3124f4259b30SLisandro Dalcin   a->rowindices   = NULL;
3125f4259b30SLisandro Dalcin   a->rowvalues    = NULL;
31260ac07820SSatish Balay   a->getrowactive = PETSC_FALSE;
3127f4259b30SLisandro Dalcin   a->barray       = NULL;
3128899cda47SBarry Smith   a->rstartbs     = oldmat->rstartbs;
3129899cda47SBarry Smith   a->rendbs       = oldmat->rendbs;
3130899cda47SBarry Smith   a->cstartbs     = oldmat->cstartbs;
3131899cda47SBarry Smith   a->cendbs       = oldmat->cendbs;
31320ac07820SSatish Balay 
3133133cdb44SSatish Balay   /* hash table stuff */
3134f4259b30SLisandro Dalcin   a->ht           = NULL;
3135f4259b30SLisandro Dalcin   a->hd           = NULL;
3136133cdb44SSatish Balay   a->ht_size      = 0;
3137133cdb44SSatish Balay   a->ht_flag      = oldmat->ht_flag;
313825fdafccSSatish Balay   a->ht_fact      = oldmat->ht_fact;
3139133cdb44SSatish Balay   a->ht_total_ct  = 0;
3140133cdb44SSatish Balay   a->ht_insert_ct = 0;
3141133cdb44SSatish Balay 
31429566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1));
31430ac07820SSatish Balay   if (oldmat->colmap) {
3144aa482453SBarry Smith #if defined(PETSC_USE_CTABLE)
31459566063dSJacob Faibussowitsch     PetscCall(PetscTableCreateCopy(oldmat->colmap, &a->colmap));
314648e59246SSatish Balay #else
31479566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(a->Nbs, &a->colmap));
31489566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat, (a->Nbs) * sizeof(PetscInt)));
31499566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs));
315048e59246SSatish Balay #endif
3151f4259b30SLisandro Dalcin   } else a->colmap = NULL;
31524beb1cfeSHong Zhang 
31530ac07820SSatish Balay   if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) {
31549566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(len, &a->garray));
31559566063dSJacob Faibussowitsch     PetscCall(PetscLogObjectMemory((PetscObject)mat, len * sizeof(PetscInt)));
31569566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(a->garray, oldmat->garray, len));
3157f4259b30SLisandro Dalcin   } else a->garray = NULL;
31580ac07820SSatish Balay 
31599566063dSJacob Faibussowitsch   PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash));
31609566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(oldmat->lvec, &a->lvec));
31619566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->lvec));
31629566063dSJacob Faibussowitsch   PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx));
31639566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->Mvctx));
31647fff6886SHong Zhang 
31659566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A));
31669566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->A));
31679566063dSJacob Faibussowitsch   PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B));
31689566063dSJacob Faibussowitsch   PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->B));
31699566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist));
31700ac07820SSatish Balay   *newmat = mat;
31713a40ed3dSBarry Smith   PetscFunctionReturn(0);
31720ac07820SSatish Balay }
317357b952d6SSatish Balay 
3174618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */
31759371c9d4SSatish Balay PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) {
3176b51a4376SLisandro Dalcin   PetscInt     header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k;
3177b51a4376SLisandro Dalcin   PetscInt    *rowidxs, *colidxs, rs, cs, ce;
3178b51a4376SLisandro Dalcin   PetscScalar *matvals;
3179b51a4376SLisandro Dalcin 
3180b51a4376SLisandro Dalcin   PetscFunctionBegin;
31819566063dSJacob Faibussowitsch   PetscCall(PetscViewerSetUp(viewer));
3182b51a4376SLisandro Dalcin 
3183b51a4376SLisandro Dalcin   /* read in matrix header */
31849566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT));
31855f80ce2aSJacob Faibussowitsch   PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file");
31869371c9d4SSatish Balay   M  = header[1];
31879371c9d4SSatish Balay   N  = header[2];
31889371c9d4SSatish Balay   nz = header[3];
31895f80ce2aSJacob Faibussowitsch   PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M);
31905f80ce2aSJacob Faibussowitsch   PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N);
31915f80ce2aSJacob Faibussowitsch   PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ");
3192b51a4376SLisandro Dalcin 
3193b51a4376SLisandro Dalcin   /* set block sizes from the viewer's .info file */
31949566063dSJacob Faibussowitsch   PetscCall(MatLoad_Binary_BlockSizes(mat, viewer));
3195618cc2edSLisandro Dalcin   /* set local sizes if not set already */
3196618cc2edSLisandro Dalcin   if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n;
3197618cc2edSLisandro Dalcin   if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n;
3198b51a4376SLisandro Dalcin   /* set global sizes if not set already */
3199b51a4376SLisandro Dalcin   if (mat->rmap->N < 0) mat->rmap->N = M;
3200b51a4376SLisandro Dalcin   if (mat->cmap->N < 0) mat->cmap->N = N;
32019566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->rmap));
32029566063dSJacob Faibussowitsch   PetscCall(PetscLayoutSetUp(mat->cmap));
3203b51a4376SLisandro Dalcin 
3204b51a4376SLisandro Dalcin   /* check if the matrix sizes are correct */
32059566063dSJacob Faibussowitsch   PetscCall(MatGetSize(mat, &rows, &cols));
32065f80ce2aSJacob Faibussowitsch   PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols);
32079566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSize(mat, &bs));
32089566063dSJacob Faibussowitsch   PetscCall(MatGetLocalSize(mat, &m, &n));
32099566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL));
32109566063dSJacob Faibussowitsch   PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce));
32119371c9d4SSatish Balay   mbs = m / bs;
32129371c9d4SSatish Balay   nbs = n / bs;
3213b51a4376SLisandro Dalcin 
3214b51a4376SLisandro Dalcin   /* read in row lengths and build row indices */
32159566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(m + 1, &rowidxs));
32169566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT));
32179371c9d4SSatish Balay   rowidxs[0] = 0;
32189371c9d4SSatish Balay   for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i];
32191c2dc1cbSBarry Smith   PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer)));
32205f80ce2aSJacob Faibussowitsch   PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum);
3221b51a4376SLisandro Dalcin 
3222b51a4376SLisandro Dalcin   /* read in column indices and matrix values */
32239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals));
32249566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT));
32259566063dSJacob Faibussowitsch   PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR));
3226b51a4376SLisandro Dalcin 
3227b51a4376SLisandro Dalcin   {                /* preallocate matrix storage */
3228b51a4376SLisandro Dalcin     PetscBT    bt; /* helper bit set to count diagonal nonzeros */
3229b51a4376SLisandro Dalcin     PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */
3230618cc2edSLisandro Dalcin     PetscBool  sbaij, done;
3231b51a4376SLisandro Dalcin     PetscInt  *d_nnz, *o_nnz;
3232b51a4376SLisandro Dalcin 
32339566063dSJacob Faibussowitsch     PetscCall(PetscBTCreate(nbs, &bt));
32349566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&ht));
32359566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz));
32369566063dSJacob Faibussowitsch     PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij));
3237b51a4376SLisandro Dalcin     for (i = 0; i < mbs; i++) {
32389566063dSJacob Faibussowitsch       PetscCall(PetscBTMemzero(nbs, bt));
32399566063dSJacob Faibussowitsch       PetscCall(PetscHSetIClear(ht));
3240618cc2edSLisandro Dalcin       for (k = 0; k < bs; k++) {
3241618cc2edSLisandro Dalcin         PetscInt row = bs * i + k;
3242618cc2edSLisandro Dalcin         for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) {
3243618cc2edSLisandro Dalcin           PetscInt col = colidxs[j];
3244618cc2edSLisandro Dalcin           if (!sbaij || col >= row) {
3245618cc2edSLisandro Dalcin             if (col >= cs && col < ce) {
3246618cc2edSLisandro Dalcin               if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++;
3247b51a4376SLisandro Dalcin             } else {
32489566063dSJacob Faibussowitsch               PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done));
3249b51a4376SLisandro Dalcin               if (done) o_nnz[i]++;
3250b51a4376SLisandro Dalcin             }
3251b51a4376SLisandro Dalcin           }
3252618cc2edSLisandro Dalcin         }
3253618cc2edSLisandro Dalcin       }
3254618cc2edSLisandro Dalcin     }
32559566063dSJacob Faibussowitsch     PetscCall(PetscBTDestroy(&bt));
32569566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&ht));
32579566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
32589566063dSJacob Faibussowitsch     PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz));
32599566063dSJacob Faibussowitsch     PetscCall(PetscFree2(d_nnz, o_nnz));
3260b51a4376SLisandro Dalcin   }
3261b51a4376SLisandro Dalcin 
3262b51a4376SLisandro Dalcin   /* store matrix values */
3263b51a4376SLisandro Dalcin   for (i = 0; i < m; i++) {
3264b51a4376SLisandro Dalcin     PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1];
32659566063dSJacob Faibussowitsch     PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES));
3266b51a4376SLisandro Dalcin   }
3267b51a4376SLisandro Dalcin 
32689566063dSJacob Faibussowitsch   PetscCall(PetscFree(rowidxs));
32699566063dSJacob Faibussowitsch   PetscCall(PetscFree2(colidxs, matvals));
32709566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY));
32719566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY));
3272b51a4376SLisandro Dalcin   PetscFunctionReturn(0);
3273b51a4376SLisandro Dalcin }
3274b51a4376SLisandro Dalcin 
32759371c9d4SSatish Balay PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) {
32767f489da9SVaclav Hapla   PetscBool isbinary;
32774683f7a4SShri Abhyankar 
32784683f7a4SShri Abhyankar   PetscFunctionBegin;
32799566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary));
32805f80ce2aSJacob Faibussowitsch   PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name);
32819566063dSJacob Faibussowitsch   PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer));
32824683f7a4SShri Abhyankar   PetscFunctionReturn(0);
32834683f7a4SShri Abhyankar }
32844683f7a4SShri Abhyankar 
3285133cdb44SSatish Balay /*@
3286133cdb44SSatish Balay    MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable.
3287133cdb44SSatish Balay 
3288133cdb44SSatish Balay    Input Parameters:
3289a2b725a8SWilliam Gropp +  mat  - the matrix
3290a2b725a8SWilliam Gropp -  fact - factor
3291133cdb44SSatish Balay 
3292c5eb9154SBarry Smith    Not Collective, each process can use a different factor
3293fee21e36SBarry Smith 
32948c890885SBarry Smith    Level: advanced
32958c890885SBarry Smith 
3296133cdb44SSatish Balay   Notes:
32978c07d4e3SBarry Smith    This can also be set by the command line option: -mat_use_hash_table <fact>
3298133cdb44SSatish Balay 
3299db781477SPatrick Sanan .seealso: `MatSetOption()`
3300133cdb44SSatish Balay @*/
33019371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) {
33025bf65638SKris Buschelman   PetscFunctionBegin;
3303cac4c232SBarry Smith   PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact));
33045bf65638SKris Buschelman   PetscFunctionReturn(0);
33055bf65638SKris Buschelman }
33065bf65638SKris Buschelman 
33079371c9d4SSatish Balay PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) {
330825fdafccSSatish Balay   Mat_MPIBAIJ *baij;
3309133cdb44SSatish Balay 
3310133cdb44SSatish Balay   PetscFunctionBegin;
3311133cdb44SSatish Balay   baij          = (Mat_MPIBAIJ *)mat->data;
3312133cdb44SSatish Balay   baij->ht_fact = fact;
3313133cdb44SSatish Balay   PetscFunctionReturn(0);
3314133cdb44SSatish Balay }
3315f2a5309cSSatish Balay 
33169371c9d4SSatish Balay PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) {
3317f2a5309cSSatish Balay   Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data;
3318ab4d48faSStefano Zampini   PetscBool    flg;
33195fd66863SKarl Rupp 
3320f2a5309cSSatish Balay   PetscFunctionBegin;
33219566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg));
33225f80ce2aSJacob Faibussowitsch   PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input");
332321e72a00SBarry Smith   if (Ad) *Ad = a->A;
332421e72a00SBarry Smith   if (Ao) *Ao = a->B;
332521e72a00SBarry Smith   if (colmap) *colmap = a->garray;
3326f2a5309cSSatish Balay   PetscFunctionReturn(0);
3327f2a5309cSSatish Balay }
332885535b8eSBarry Smith 
332985535b8eSBarry Smith /*
333085535b8eSBarry Smith     Special version for direct calls from Fortran (to eliminate two function call overheads
333185535b8eSBarry Smith */
333285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS)
333385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED
333485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE)
333585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked
333685535b8eSBarry Smith #endif
333785535b8eSBarry Smith 
333885535b8eSBarry Smith /*@C
333985535b8eSBarry Smith   MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked()
334085535b8eSBarry Smith 
334185535b8eSBarry Smith   Collective on Mat
334285535b8eSBarry Smith 
334385535b8eSBarry Smith   Input Parameters:
334485535b8eSBarry Smith + mat - the matrix
334585535b8eSBarry Smith . min - number of input rows
334685535b8eSBarry Smith . im - input rows
334785535b8eSBarry Smith . nin - number of input columns
334885535b8eSBarry Smith . in - input columns
334985535b8eSBarry Smith . v - numerical values input
335085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES
335185535b8eSBarry Smith 
335295452b02SPatrick Sanan   Notes:
335395452b02SPatrick Sanan     This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse.
335485535b8eSBarry Smith 
335585535b8eSBarry Smith   Level: advanced
335685535b8eSBarry Smith 
3357db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()`
335885535b8eSBarry Smith @*/
33599371c9d4SSatish Balay PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) {
336085535b8eSBarry Smith   /* convert input arguments to C version */
336185535b8eSBarry Smith   Mat        mat = *matin;
336285535b8eSBarry Smith   PetscInt   m = *min, n = *nin;
336385535b8eSBarry Smith   InsertMode addv = *addvin;
336485535b8eSBarry Smith 
336585535b8eSBarry Smith   Mat_MPIBAIJ     *baij = (Mat_MPIBAIJ *)mat->data;
336685535b8eSBarry Smith   const MatScalar *value;
336785535b8eSBarry Smith   MatScalar       *barray      = baij->barray;
3368ace3abfcSBarry Smith   PetscBool        roworiented = baij->roworiented;
336985535b8eSBarry Smith   PetscInt         i, j, ii, jj, row, col, rstart = baij->rstartbs;
337085535b8eSBarry Smith   PetscInt         rend = baij->rendbs, cstart = baij->cstartbs, stepval;
3371d0f46423SBarry Smith   PetscInt         cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2;
337285535b8eSBarry Smith 
337385535b8eSBarry Smith   PetscFunctionBegin;
337485535b8eSBarry Smith   /* tasks normally handled by MatSetValuesBlocked() */
337526fbe8dcSKarl Rupp   if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv;
33765f80ce2aSJacob Faibussowitsch   else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values");
33775f80ce2aSJacob Faibussowitsch   PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix");
337885535b8eSBarry Smith   if (mat->assembled) {
337985535b8eSBarry Smith     mat->was_assembled = PETSC_TRUE;
338085535b8eSBarry Smith     mat->assembled     = PETSC_FALSE;
338185535b8eSBarry Smith   }
33829566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0));
338385535b8eSBarry Smith 
338485535b8eSBarry Smith   if (!barray) {
33859566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(bs2, &barray));
338685535b8eSBarry Smith     baij->barray = barray;
338785535b8eSBarry Smith   }
338885535b8eSBarry Smith 
338926fbe8dcSKarl Rupp   if (roworiented) stepval = (n - 1) * bs;
339026fbe8dcSKarl Rupp   else stepval = (m - 1) * bs;
339126fbe8dcSKarl Rupp 
339285535b8eSBarry Smith   for (i = 0; i < m; i++) {
339385535b8eSBarry Smith     if (im[i] < 0) continue;
33946bdcaf15SBarry Smith     PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1);
339585535b8eSBarry Smith     if (im[i] >= rstart && im[i] < rend) {
339685535b8eSBarry Smith       row = im[i] - rstart;
339785535b8eSBarry Smith       for (j = 0; j < n; j++) {
339885535b8eSBarry Smith         /* If NumCol = 1 then a copy is not required */
339985535b8eSBarry Smith         if ((roworiented) && (n == 1)) {
340085535b8eSBarry Smith           barray = (MatScalar *)v + i * bs2;
340185535b8eSBarry Smith         } else if ((!roworiented) && (m == 1)) {
340285535b8eSBarry Smith           barray = (MatScalar *)v + j * bs2;
340385535b8eSBarry Smith         } else { /* Here a copy is required */
340485535b8eSBarry Smith           if (roworiented) {
340585535b8eSBarry Smith             value = v + i * (stepval + bs) * bs + j * bs;
340685535b8eSBarry Smith           } else {
340785535b8eSBarry Smith             value = v + j * (stepval + bs) * bs + i * bs;
340885535b8eSBarry Smith           }
340985535b8eSBarry Smith           for (ii = 0; ii < bs; ii++, value += stepval) {
34109371c9d4SSatish Balay             for (jj = 0; jj < bs; jj++) { *barray++ = *value++; }
341185535b8eSBarry Smith           }
341285535b8eSBarry Smith           barray -= bs2;
341385535b8eSBarry Smith         }
341485535b8eSBarry Smith 
341585535b8eSBarry Smith         if (in[j] >= cstart && in[j] < cend) {
341685535b8eSBarry Smith           col = in[j] - cstart;
34179566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j]));
3418f7d195e4SLawrence Mitchell         } else if (in[j] < 0) {
3419f7d195e4SLawrence Mitchell           continue;
3420f7d195e4SLawrence Mitchell         } else {
3421f7d195e4SLawrence Mitchell           PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1);
342285535b8eSBarry Smith           if (mat->was_assembled) {
3423*48a46eb9SPierre Jolivet             if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat));
342485535b8eSBarry Smith 
342585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG)
342685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
34279371c9d4SSatish Balay             {
34289371c9d4SSatish Balay               PetscInt data;
34299566063dSJacob Faibussowitsch               PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data));
343008401ef6SPierre Jolivet               PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
343185535b8eSBarry Smith             }
343285535b8eSBarry Smith #else
343308401ef6SPierre Jolivet             PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap");
343485535b8eSBarry Smith #endif
343585535b8eSBarry Smith #endif
343685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE)
34379566063dSJacob Faibussowitsch             PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col));
343885535b8eSBarry Smith             col = (col - 1) / bs;
343985535b8eSBarry Smith #else
344085535b8eSBarry Smith             col = (baij->colmap[in[j]] - 1) / bs;
344185535b8eSBarry Smith #endif
344285535b8eSBarry Smith             if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) {
34439566063dSJacob Faibussowitsch               PetscCall(MatDisAssemble_MPIBAIJ(mat));
344485535b8eSBarry Smith               col = in[j];
344585535b8eSBarry Smith             }
344626fbe8dcSKarl Rupp           } else col = in[j];
34479566063dSJacob Faibussowitsch           PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j]));
344885535b8eSBarry Smith         }
344985535b8eSBarry Smith       }
345085535b8eSBarry Smith     } else {
345185535b8eSBarry Smith       if (!baij->donotstash) {
345285535b8eSBarry Smith         if (roworiented) {
34539566063dSJacob Faibussowitsch           PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
345485535b8eSBarry Smith         } else {
34559566063dSJacob Faibussowitsch           PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i));
345685535b8eSBarry Smith         }
345785535b8eSBarry Smith       }
345885535b8eSBarry Smith     }
345985535b8eSBarry Smith   }
346085535b8eSBarry Smith 
346185535b8eSBarry Smith   /* task normally handled by MatSetValuesBlocked() */
34629566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0));
346385535b8eSBarry Smith   PetscFunctionReturn(0);
346485535b8eSBarry Smith }
3465dfb205c3SBarry Smith 
3466dfb205c3SBarry Smith /*@
3467483a2f95SBarry Smith      MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block
3468dfb205c3SBarry Smith          CSR format the local rows.
3469dfb205c3SBarry Smith 
3470d083f849SBarry Smith    Collective
3471dfb205c3SBarry Smith 
3472dfb205c3SBarry Smith    Input Parameters:
3473dfb205c3SBarry Smith +  comm - MPI communicator
3474dfb205c3SBarry Smith .  bs - the block size, only a block size of 1 is supported
3475dfb205c3SBarry Smith .  m - number of local rows (Cannot be PETSC_DECIDE)
3476dfb205c3SBarry Smith .  n - This value should be the same as the local size used in creating the
3477dfb205c3SBarry Smith        x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have
3478dfb205c3SBarry Smith        calculated if N is given) For square matrices n is almost always m.
3479dfb205c3SBarry Smith .  M - number of global rows (or PETSC_DETERMINE to have calculated if m is given)
3480dfb205c3SBarry Smith .  N - number of global columns (or PETSC_DETERMINE to have calculated if n is given)
3481483a2f95SBarry Smith .   i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix
3482dfb205c3SBarry Smith .   j - column indices
3483dfb205c3SBarry Smith -   a - matrix values
3484dfb205c3SBarry Smith 
3485dfb205c3SBarry Smith    Output Parameter:
3486dfb205c3SBarry Smith .   mat - the matrix
3487dfb205c3SBarry Smith 
3488dfb205c3SBarry Smith    Level: intermediate
3489dfb205c3SBarry Smith 
3490dfb205c3SBarry Smith    Notes:
3491dfb205c3SBarry Smith        The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc;
3492dfb205c3SBarry Smith      thus you CANNOT change the matrix entries by changing the values of a[] after you have
3493dfb205c3SBarry Smith      called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays.
3494dfb205c3SBarry Smith 
34953adadaf3SJed Brown      The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is
34963adadaf3SJed Brown      the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first
34973adadaf3SJed Brown      block, followed by the second column of the first block etc etc.  That is, the blocks are contiguous in memory
34983adadaf3SJed Brown      with column-major ordering within blocks.
34993adadaf3SJed Brown 
3500dfb205c3SBarry Smith        The i and j indices are 0 based, and i indices are indices corresponding to the local j array.
3501dfb205c3SBarry Smith 
3502db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`,
3503db781477SPatrick Sanan           `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()`
3504dfb205c3SBarry Smith @*/
35059371c9d4SSatish Balay PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) {
3506dfb205c3SBarry Smith   PetscFunctionBegin;
35075f80ce2aSJacob Faibussowitsch   PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0");
35085f80ce2aSJacob Faibussowitsch   PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative");
35099566063dSJacob Faibussowitsch   PetscCall(MatCreate(comm, mat));
35109566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(*mat, m, n, M, N));
35119566063dSJacob Faibussowitsch   PetscCall(MatSetType(*mat, MATMPIBAIJ));
35129566063dSJacob Faibussowitsch   PetscCall(MatSetBlockSize(*mat, bs));
35139566063dSJacob Faibussowitsch   PetscCall(MatSetUp(*mat));
35149566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE));
35159566063dSJacob Faibussowitsch   PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a));
35169566063dSJacob Faibussowitsch   PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE));
3517dfb205c3SBarry Smith   PetscFunctionReturn(0);
3518dfb205c3SBarry Smith }
3519e561ad89SHong Zhang 
35209371c9d4SSatish Balay PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) {
3521bd153df0SHong Zhang   PetscInt     m, N, i, rstart, nnz, Ii, bs, cbs;
3522bd153df0SHong Zhang   PetscInt    *indx;
3523bd153df0SHong Zhang   PetscScalar *values;
3524e561ad89SHong Zhang 
3525e561ad89SHong Zhang   PetscFunctionBegin;
35269566063dSJacob Faibussowitsch   PetscCall(MatGetSize(inmat, &m, &N));
3527bd153df0SHong Zhang   if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */
3528bd153df0SHong Zhang     Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data;
35292c6ba4edSHong Zhang     PetscInt    *dnz, *onz, mbs, Nbs, nbs;
3530bd153df0SHong Zhang     PetscInt    *bindx, rmax = a->rmax, j;
353177f764caSHong Zhang     PetscMPIInt  rank, size;
3532e561ad89SHong Zhang 
35339566063dSJacob Faibussowitsch     PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
35349371c9d4SSatish Balay     mbs = m / bs;
35359371c9d4SSatish Balay     Nbs = N / cbs;
3536*48a46eb9SPierre Jolivet     if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N));
3537da91a574SPierre Jolivet     nbs = n / cbs;
3538e561ad89SHong Zhang 
35399566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(rmax, &bindx));
3540d0609cedSBarry Smith     MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */
354177f764caSHong Zhang 
35429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &rank));
35439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &size));
354477f764caSHong Zhang     if (rank == size - 1) {
354577f764caSHong Zhang       /* Check sum(nbs) = Nbs */
35465f80ce2aSJacob Faibussowitsch       PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs);
354777f764caSHong Zhang     }
354877f764caSHong Zhang 
3549d0609cedSBarry Smith     rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */
3550bd153df0SHong Zhang     for (i = 0; i < mbs; i++) {
35519566063dSJacob Faibussowitsch       PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */
3552647a6520SHong Zhang       nnz = nnz / bs;
3553647a6520SHong Zhang       for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs;
35549566063dSJacob Faibussowitsch       PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz));
35559566063dSJacob Faibussowitsch       PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL));
3556e561ad89SHong Zhang     }
35579566063dSJacob Faibussowitsch     PetscCall(PetscFree(bindx));
3558e561ad89SHong Zhang 
35599566063dSJacob Faibussowitsch     PetscCall(MatCreate(comm, outmat));
35609566063dSJacob Faibussowitsch     PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE));
35619566063dSJacob Faibussowitsch     PetscCall(MatSetBlockSizes(*outmat, bs, cbs));
35629566063dSJacob Faibussowitsch     PetscCall(MatSetType(*outmat, MATBAIJ));
35639566063dSJacob Faibussowitsch     PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz));
35649566063dSJacob Faibussowitsch     PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz));
3565d0609cedSBarry Smith     MatPreallocateEnd(dnz, onz);
35669566063dSJacob Faibussowitsch     PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE));
3567e561ad89SHong Zhang   }
3568e561ad89SHong Zhang 
3569bd153df0SHong Zhang   /* numeric phase */
35709566063dSJacob Faibussowitsch   PetscCall(MatGetBlockSizes(inmat, &bs, &cbs));
35719566063dSJacob Faibussowitsch   PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL));
3572e561ad89SHong Zhang 
3573e561ad89SHong Zhang   for (i = 0; i < m; i++) {
35749566063dSJacob Faibussowitsch     PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3575e561ad89SHong Zhang     Ii = i + rstart;
35769566063dSJacob Faibussowitsch     PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES));
35779566063dSJacob Faibussowitsch     PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values));
3578e561ad89SHong Zhang   }
35799566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY));
35809566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY));
3581e561ad89SHong Zhang   PetscFunctionReturn(0);
3582e561ad89SHong Zhang }
3583