1c6db04a5SJed Brown #include <../src/mat/impls/baij/mpi/mpibaij.h> /*I "petscmat.h" I*/ 2c5d9258eSSatish Balay 3b51a4376SLisandro Dalcin #include <petsc/private/hashseti.h> 4c6db04a5SJed Brown #include <petscblaslapack.h> 565a92638SMatthew G. Knepley #include <petscsf.h> 679bdfe76SSatish Balay 77ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 87ea3e4caSstefano_zampini PETSC_INTERN PetscErrorCode MatConvert_AIJ_HYPRE(Mat, MatType, MatReuse, Mat *); 97ea3e4caSstefano_zampini #endif 107ea3e4caSstefano_zampini 119371c9d4SSatish Balay PetscErrorCode MatGetRowMaxAbs_MPIBAIJ(Mat A, Vec v, PetscInt idx[]) { 127843d17aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 134e879edeSHong Zhang PetscInt i, *idxb = NULL, m = A->rmap->n, bs = A->cmap->bs; 144e879edeSHong Zhang PetscScalar *va, *vv; 154e879edeSHong Zhang Vec vB, vA; 164e879edeSHong Zhang const PetscScalar *vb; 177843d17aSBarry Smith 187843d17aSBarry Smith PetscFunctionBegin; 199566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vA)); 209566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->A, vA, idx)); 214e879edeSHong Zhang 229566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(vA, &va)); 23985db425SBarry Smith if (idx) { 244e879edeSHong Zhang for (i = 0; i < m; i++) { 2526fbe8dcSKarl Rupp if (PetscAbsScalar(va[i])) idx[i] += A->cmap->rstart; 2626fbe8dcSKarl Rupp } 27985db425SBarry Smith } 287843d17aSBarry Smith 299566063dSJacob Faibussowitsch PetscCall(VecCreateSeq(PETSC_COMM_SELF, m, &vB)); 309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &idxb)); 319566063dSJacob Faibussowitsch PetscCall(MatGetRowMaxAbs(a->B, vB, idxb)); 327843d17aSBarry Smith 339566063dSJacob Faibussowitsch PetscCall(VecGetArrayWrite(v, &vv)); 349566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(vB, &vb)); 354e879edeSHong Zhang for (i = 0; i < m; i++) { 3626fbe8dcSKarl Rupp if (PetscAbsScalar(va[i]) < PetscAbsScalar(vb[i])) { 374e879edeSHong Zhang vv[i] = vb[i]; 384e879edeSHong Zhang if (idx) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 394e879edeSHong Zhang } else { 404e879edeSHong Zhang vv[i] = va[i]; 419371c9d4SSatish Balay if (idx && PetscAbsScalar(va[i]) == PetscAbsScalar(vb[i]) && idxb[i] != -1 && idx[i] > bs * a->garray[idxb[i] / bs] + (idxb[i] % bs)) idx[i] = bs * a->garray[idxb[i] / bs] + (idxb[i] % bs); 4226fbe8dcSKarl Rupp } 437843d17aSBarry Smith } 449566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &vv)); 459566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayWrite(vA, &va)); 469566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(vB, &vb)); 479566063dSJacob Faibussowitsch PetscCall(PetscFree(idxb)); 489566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vA)); 499566063dSJacob Faibussowitsch PetscCall(VecDestroy(&vB)); 507843d17aSBarry Smith PetscFunctionReturn(0); 517843d17aSBarry Smith } 527843d17aSBarry Smith 539371c9d4SSatish Balay PetscErrorCode MatStoreValues_MPIBAIJ(Mat mat) { 547fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 557fc3c18eSBarry Smith 567fc3c18eSBarry Smith PetscFunctionBegin; 579566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->A)); 589566063dSJacob Faibussowitsch PetscCall(MatStoreValues(aij->B)); 597fc3c18eSBarry Smith PetscFunctionReturn(0); 607fc3c18eSBarry Smith } 617fc3c18eSBarry Smith 629371c9d4SSatish Balay PetscErrorCode MatRetrieveValues_MPIBAIJ(Mat mat) { 637fc3c18eSBarry Smith Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 647fc3c18eSBarry Smith 657fc3c18eSBarry Smith PetscFunctionBegin; 669566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->A)); 679566063dSJacob Faibussowitsch PetscCall(MatRetrieveValues(aij->B)); 687fc3c18eSBarry Smith PetscFunctionReturn(0); 697fc3c18eSBarry Smith } 707fc3c18eSBarry Smith 71537820f0SBarry Smith /* 72537820f0SBarry Smith Local utility routine that creates a mapping from the global column 7357b952d6SSatish Balay number to the local number in the off-diagonal part of the local 74e06f6af7SJed Brown storage of the matrix. This is done in a non scalable way since the 7557b952d6SSatish Balay length of colmap equals the global matrix length. 7657b952d6SSatish Balay */ 779371c9d4SSatish Balay PetscErrorCode MatCreateColmap_MPIBAIJ_Private(Mat mat) { 7857b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 7957b952d6SSatish Balay Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 80d0f46423SBarry Smith PetscInt nbs = B->nbs, i, bs = mat->rmap->bs; 8157b952d6SSatish Balay 82d64ed03dSBarry Smith PetscFunctionBegin; 83aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 849566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(baij->nbs, baij->Nbs + 1, &baij->colmap)); 85*48a46eb9SPierre Jolivet for (i = 0; i < nbs; i++) PetscCall(PetscTableAdd(baij->colmap, baij->garray[i] + 1, i * bs + 1, INSERT_VALUES)); 8648e59246SSatish Balay #else 879566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(baij->Nbs + 1, &baij->colmap)); 889566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat, baij->Nbs * sizeof(PetscInt))); 89928fc39bSSatish Balay for (i = 0; i < nbs; i++) baij->colmap[baij->garray[i]] = i * bs + 1; 9048e59246SSatish Balay #endif 913a40ed3dSBarry Smith PetscFunctionReturn(0); 9257b952d6SSatish Balay } 9357b952d6SSatish Balay 94d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, orow, ocol) \ 9580c1aa95SSatish Balay { \ 9680c1aa95SSatish Balay brow = row / bs; \ 979371c9d4SSatish Balay rp = aj + ai[brow]; \ 989371c9d4SSatish Balay ap = aa + bs2 * ai[brow]; \ 999371c9d4SSatish Balay rmax = aimax[brow]; \ 1009371c9d4SSatish Balay nrow = ailen[brow]; \ 10180c1aa95SSatish Balay bcol = col / bs; \ 1029371c9d4SSatish Balay ridx = row % bs; \ 1039371c9d4SSatish Balay cidx = col % bs; \ 1049371c9d4SSatish Balay low = 0; \ 1059371c9d4SSatish Balay high = nrow; \ 106ab26458aSBarry Smith while (high - low > 3) { \ 107ab26458aSBarry Smith t = (low + high) / 2; \ 108ab26458aSBarry Smith if (rp[t] > bcol) high = t; \ 109ab26458aSBarry Smith else low = t; \ 110ab26458aSBarry Smith } \ 111ab26458aSBarry Smith for (_i = low; _i < high; _i++) { \ 11280c1aa95SSatish Balay if (rp[_i] > bcol) break; \ 11380c1aa95SSatish Balay if (rp[_i] == bcol) { \ 11480c1aa95SSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 115eada6651SSatish Balay if (addv == ADD_VALUES) *bap += value; \ 116eada6651SSatish Balay else *bap = value; \ 117ac7a638eSSatish Balay goto a_noinsert; \ 11880c1aa95SSatish Balay } \ 11980c1aa95SSatish Balay } \ 12089280ab3SLois Curfman McInnes if (a->nonew == 1) goto a_noinsert; \ 1215f80ce2aSJacob Faibussowitsch PetscCheck(a->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 122fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, brow, bcol, rmax, aa, ai, aj, rp, ap, aimax, a->nonew, MatScalar); \ 12380c1aa95SSatish Balay N = nrow++ - 1; \ 12480c1aa95SSatish Balay /* shift up all the later entries in this row */ \ 1259566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1269566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1279566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 12880c1aa95SSatish Balay rp[_i] = bcol; \ 12980c1aa95SSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 130ac7a638eSSatish Balay a_noinsert:; \ 13180c1aa95SSatish Balay ailen[brow] = nrow; \ 13280c1aa95SSatish Balay } 13357b952d6SSatish Balay 134d40312a9SBarry Smith #define MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, orow, ocol) \ 135ac7a638eSSatish Balay { \ 136ac7a638eSSatish Balay brow = row / bs; \ 1379371c9d4SSatish Balay rp = bj + bi[brow]; \ 1389371c9d4SSatish Balay ap = ba + bs2 * bi[brow]; \ 1399371c9d4SSatish Balay rmax = bimax[brow]; \ 1409371c9d4SSatish Balay nrow = bilen[brow]; \ 141ac7a638eSSatish Balay bcol = col / bs; \ 1429371c9d4SSatish Balay ridx = row % bs; \ 1439371c9d4SSatish Balay cidx = col % bs; \ 1449371c9d4SSatish Balay low = 0; \ 1459371c9d4SSatish Balay high = nrow; \ 146ac7a638eSSatish Balay while (high - low > 3) { \ 147ac7a638eSSatish Balay t = (low + high) / 2; \ 148ac7a638eSSatish Balay if (rp[t] > bcol) high = t; \ 149ac7a638eSSatish Balay else low = t; \ 150ac7a638eSSatish Balay } \ 151ac7a638eSSatish Balay for (_i = low; _i < high; _i++) { \ 152ac7a638eSSatish Balay if (rp[_i] > bcol) break; \ 153ac7a638eSSatish Balay if (rp[_i] == bcol) { \ 154ac7a638eSSatish Balay bap = ap + bs2 * _i + bs * cidx + ridx; \ 155ac7a638eSSatish Balay if (addv == ADD_VALUES) *bap += value; \ 156ac7a638eSSatish Balay else *bap = value; \ 157ac7a638eSSatish Balay goto b_noinsert; \ 158ac7a638eSSatish Balay } \ 159ac7a638eSSatish Balay } \ 16089280ab3SLois Curfman McInnes if (b->nonew == 1) goto b_noinsert; \ 1615f80ce2aSJacob Faibussowitsch PetscCheck(b->nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero at global row/column (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", orow, ocol); \ 162fef13f97SBarry Smith MatSeqXAIJReallocateAIJ(B, b->mbs, bs2, nrow, brow, bcol, rmax, ba, bi, bj, rp, ap, bimax, b->nonew, MatScalar); \ 163ac7a638eSSatish Balay N = nrow++ - 1; \ 164ac7a638eSSatish Balay /* shift up all the later entries in this row */ \ 1659566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + _i + 1, rp + _i, N - _i + 1)); \ 1669566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (_i + 1), ap + bs2 * _i, bs2 * (N - _i + 1))); \ 1679566063dSJacob Faibussowitsch PetscCall(PetscArrayzero(ap + bs2 * _i, bs2)); \ 168ac7a638eSSatish Balay rp[_i] = bcol; \ 169ac7a638eSSatish Balay ap[bs2 * _i + bs * cidx + ridx] = value; \ 170ac7a638eSSatish Balay b_noinsert:; \ 171ac7a638eSSatish Balay bilen[brow] = nrow; \ 172ac7a638eSSatish Balay } 173ac7a638eSSatish Balay 1749371c9d4SSatish Balay PetscErrorCode MatSetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) { 17557b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 17693fea6afSBarry Smith MatScalar value; 177ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 178b24ad042SBarry Smith PetscInt i, j, row, col; 179d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 180d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, cstart_orig = mat->cmap->rstart; 181d0f46423SBarry Smith PetscInt cend_orig = mat->cmap->rend, bs = mat->rmap->bs; 18257b952d6SSatish Balay 183eada6651SSatish Balay /* Some Variables required in the macro */ 18480c1aa95SSatish Balay Mat A = baij->A; 18580c1aa95SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)(A)->data; 186b24ad042SBarry Smith PetscInt *aimax = a->imax, *ai = a->i, *ailen = a->ilen, *aj = a->j; 1873eda8832SBarry Smith MatScalar *aa = a->a; 188ac7a638eSSatish Balay 189ac7a638eSSatish Balay Mat B = baij->B; 190ac7a638eSSatish Balay Mat_SeqBAIJ *b = (Mat_SeqBAIJ *)(B)->data; 191b24ad042SBarry Smith PetscInt *bimax = b->imax, *bi = b->i, *bilen = b->ilen, *bj = b->j; 1923eda8832SBarry Smith MatScalar *ba = b->a; 193ac7a638eSSatish Balay 194b24ad042SBarry Smith PetscInt *rp, ii, nrow, _i, rmax, N, brow, bcol; 195b24ad042SBarry Smith PetscInt low, high, t, ridx, cidx, bs2 = a->bs2; 1963eda8832SBarry Smith MatScalar *ap, *bap; 19780c1aa95SSatish Balay 198d64ed03dSBarry Smith PetscFunctionBegin; 19957b952d6SSatish Balay for (i = 0; i < m; i++) { 2005ef9f2a5SBarry Smith if (im[i] < 0) continue; 2015f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 20257b952d6SSatish Balay if (im[i] >= rstart_orig && im[i] < rend_orig) { 20357b952d6SSatish Balay row = im[i] - rstart_orig; 20457b952d6SSatish Balay for (j = 0; j < n; j++) { 20557b952d6SSatish Balay if (in[j] >= cstart_orig && in[j] < cend_orig) { 20657b952d6SSatish Balay col = in[j] - cstart_orig; 207db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 208db4deed7SKarl Rupp else value = v[i + j * m]; 209d40312a9SBarry Smith MatSetValues_SeqBAIJ_A_Private(row, col, value, addv, im[i], in[j]); 210f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 211f7d195e4SLawrence Mitchell continue; 212f7d195e4SLawrence Mitchell } else { 213f7d195e4SLawrence Mitchell PetscCheck(in[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], mat->cmap->N - 1); 21457b952d6SSatish Balay if (mat->was_assembled) { 215*48a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 216aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 2179566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] / bs + 1, &col)); 218bba1ac68SSatish Balay col = col - 1; 21948e59246SSatish Balay #else 220bba1ac68SSatish Balay col = baij->colmap[in[j] / bs] - 1; 22148e59246SSatish Balay #endif 222c9ef50b2SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 2239566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 2248295de27SSatish Balay col = in[j]; 2259bf004c3SSatish Balay /* Reinitialize the variables required by MatSetValues_SeqBAIJ_B_Private() */ 2269bf004c3SSatish Balay B = baij->B; 2279bf004c3SSatish Balay b = (Mat_SeqBAIJ *)(B)->data; 2289371c9d4SSatish Balay bimax = b->imax; 2299371c9d4SSatish Balay bi = b->i; 2309371c9d4SSatish Balay bilen = b->ilen; 2319371c9d4SSatish Balay bj = b->j; 2329bf004c3SSatish Balay ba = b->a; 233f7d195e4SLawrence Mitchell } else { 234f7d195e4SLawrence Mitchell PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new nonzero (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 235f7d195e4SLawrence Mitchell col += in[j] % bs; 236f7d195e4SLawrence Mitchell } 2378295de27SSatish Balay } else col = in[j]; 238db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 239db4deed7SKarl Rupp else value = v[i + j * m]; 240d40312a9SBarry Smith MatSetValues_SeqBAIJ_B_Private(row, col, value, addv, im[i], in[j]); 2419566063dSJacob Faibussowitsch /* PetscCall(MatSetValues_SeqBAIJ(baij->B,1,&row,1,&col,&value,addv)); */ 24257b952d6SSatish Balay } 24357b952d6SSatish Balay } 244d64ed03dSBarry Smith } else { 2455f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 24690f02eecSBarry Smith if (!baij->donotstash) { 2475080c13bSMatthew G Knepley mat->assembled = PETSC_FALSE; 248ff2fd236SBarry Smith if (roworiented) { 2499566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 250ff2fd236SBarry Smith } else { 2519566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 25257b952d6SSatish Balay } 25357b952d6SSatish Balay } 25457b952d6SSatish Balay } 25590f02eecSBarry Smith } 2563a40ed3dSBarry Smith PetscFunctionReturn(0); 25757b952d6SSatish Balay } 25857b952d6SSatish Balay 2599371c9d4SSatish Balay static inline PetscErrorCode MatSetValuesBlocked_SeqBAIJ_Inlined(Mat A, PetscInt row, PetscInt col, const PetscScalar v[], InsertMode is, PetscInt orow, PetscInt ocol) { 260880c6e6aSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data; 2618ab52850SBarry Smith PetscInt *rp, low, high, t, ii, jj, nrow, i, rmax, N; 262880c6e6aSBarry Smith PetscInt *imax = a->imax, *ai = a->i, *ailen = a->ilen; 2638ab52850SBarry Smith PetscInt *aj = a->j, nonew = a->nonew, bs2 = a->bs2, bs = A->rmap->bs; 264880c6e6aSBarry Smith PetscBool roworiented = a->roworiented; 265880c6e6aSBarry Smith const PetscScalar *value = v; 266880c6e6aSBarry Smith MatScalar *ap, *aa = a->a, *bap; 267880c6e6aSBarry Smith 268880c6e6aSBarry Smith PetscFunctionBegin; 269880c6e6aSBarry Smith rp = aj + ai[row]; 270880c6e6aSBarry Smith ap = aa + bs2 * ai[row]; 271880c6e6aSBarry Smith rmax = imax[row]; 272880c6e6aSBarry Smith nrow = ailen[row]; 2738ab52850SBarry Smith value = v; 2748ab52850SBarry Smith low = 0; 2758ab52850SBarry Smith high = nrow; 276880c6e6aSBarry Smith while (high - low > 7) { 277880c6e6aSBarry Smith t = (low + high) / 2; 278880c6e6aSBarry Smith if (rp[t] > col) high = t; 279880c6e6aSBarry Smith else low = t; 280880c6e6aSBarry Smith } 281880c6e6aSBarry Smith for (i = low; i < high; i++) { 282880c6e6aSBarry Smith if (rp[i] > col) break; 283880c6e6aSBarry Smith if (rp[i] == col) { 284880c6e6aSBarry Smith bap = ap + bs2 * i; 285880c6e6aSBarry Smith if (roworiented) { 286880c6e6aSBarry Smith if (is == ADD_VALUES) { 2878ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 2889371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] += *value++; } 289880c6e6aSBarry Smith } 290880c6e6aSBarry Smith } else { 2918ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 2929371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; } 293880c6e6aSBarry Smith } 294880c6e6aSBarry Smith } 295880c6e6aSBarry Smith } else { 296880c6e6aSBarry Smith if (is == ADD_VALUES) { 2978ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 2989371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { bap[jj] += value[jj]; } 299880c6e6aSBarry Smith bap += bs; 300880c6e6aSBarry Smith } 301880c6e6aSBarry Smith } else { 3028ab52850SBarry Smith for (ii = 0; ii < bs; ii++, value += bs) { 3039371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { bap[jj] = value[jj]; } 304880c6e6aSBarry Smith bap += bs; 305880c6e6aSBarry Smith } 306880c6e6aSBarry Smith } 307880c6e6aSBarry Smith } 308880c6e6aSBarry Smith goto noinsert2; 309880c6e6aSBarry Smith } 310880c6e6aSBarry Smith } 311880c6e6aSBarry Smith if (nonew == 1) goto noinsert2; 3125f80ce2aSJacob Faibussowitsch PetscCheck(nonew != -1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new global block indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") in the matrix", orow, ocol); 313880c6e6aSBarry Smith MatSeqXAIJReallocateAIJ(A, a->mbs, bs2, nrow, row, col, rmax, aa, ai, aj, rp, ap, imax, nonew, MatScalar); 3149371c9d4SSatish Balay N = nrow++ - 1; 3159371c9d4SSatish Balay high++; 316880c6e6aSBarry Smith /* shift up all the later entries in this row */ 3179566063dSJacob Faibussowitsch PetscCall(PetscArraymove(rp + i + 1, rp + i, N - i + 1)); 3189566063dSJacob Faibussowitsch PetscCall(PetscArraymove(ap + bs2 * (i + 1), ap + bs2 * i, bs2 * (N - i + 1))); 319880c6e6aSBarry Smith rp[i] = col; 320880c6e6aSBarry Smith bap = ap + bs2 * i; 321880c6e6aSBarry Smith if (roworiented) { 3228ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 3239371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { bap[jj] = *value++; } 324880c6e6aSBarry Smith } 325880c6e6aSBarry Smith } else { 3268ab52850SBarry Smith for (ii = 0; ii < bs; ii++) { 3279371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { *bap++ = *value++; } 328880c6e6aSBarry Smith } 329880c6e6aSBarry Smith } 330880c6e6aSBarry Smith noinsert2:; 331880c6e6aSBarry Smith ailen[row] = nrow; 332880c6e6aSBarry Smith PetscFunctionReturn(0); 333880c6e6aSBarry Smith } 334880c6e6aSBarry Smith 3358ab52850SBarry Smith /* 3368ab52850SBarry Smith This routine should be optimized so that the block copy at ** Here a copy is required ** below is not needed 3378ab52850SBarry Smith by passing additional stride information into the MatSetValuesBlocked_SeqBAIJ_Inlined() routine 3388ab52850SBarry Smith */ 3399371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPIBAIJ(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) { 340ab26458aSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 341dd6ea824SBarry Smith const PetscScalar *value; 342f15d580aSBarry Smith MatScalar *barray = baij->barray; 343ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 344899cda47SBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 345899cda47SBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 346d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 347ab26458aSBarry Smith 348b16ae2b1SBarry Smith PetscFunctionBegin; 34930793edcSSatish Balay if (!barray) { 3509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 35182502324SSatish Balay baij->barray = barray; 35230793edcSSatish Balay } 35330793edcSSatish Balay 35426fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 35526fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 35626fbe8dcSKarl Rupp 357ab26458aSBarry Smith for (i = 0; i < m; i++) { 3585ef9f2a5SBarry Smith if (im[i] < 0) continue; 3596bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed row too large %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 360ab26458aSBarry Smith if (im[i] >= rstart && im[i] < rend) { 361ab26458aSBarry Smith row = im[i] - rstart; 362ab26458aSBarry Smith for (j = 0; j < n; j++) { 36315b57d14SSatish Balay /* If NumCol = 1 then a copy is not required */ 36415b57d14SSatish Balay if ((roworiented) && (n == 1)) { 365f15d580aSBarry Smith barray = (MatScalar *)v + i * bs2; 36615b57d14SSatish Balay } else if ((!roworiented) && (m == 1)) { 367f15d580aSBarry Smith barray = (MatScalar *)v + j * bs2; 36815b57d14SSatish Balay } else { /* Here a copy is required */ 369ab26458aSBarry Smith if (roworiented) { 37053ef36baSBarry Smith value = v + (i * (stepval + bs) + j) * bs; 371ab26458aSBarry Smith } else { 37253ef36baSBarry Smith value = v + (j * (stepval + bs) + i) * bs; 373abef11f7SSatish Balay } 37453ef36baSBarry Smith for (ii = 0; ii < bs; ii++, value += bs + stepval) { 37526fbe8dcSKarl Rupp for (jj = 0; jj < bs; jj++) barray[jj] = value[jj]; 37653ef36baSBarry Smith barray += bs; 37747513183SBarry Smith } 37830793edcSSatish Balay barray -= bs2; 37915b57d14SSatish Balay } 380abef11f7SSatish Balay 381abef11f7SSatish Balay if (in[j] >= cstart && in[j] < cend) { 382abef11f7SSatish Balay col = in[j] - cstart; 3839566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 384f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 385f7d195e4SLawrence Mitchell continue; 386f7d195e4SLawrence Mitchell } else { 387f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Block indexed column too large %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 388ab26458aSBarry Smith if (mat->was_assembled) { 389*48a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 390a5eb4965SSatish Balay 3912515c552SBarry Smith #if defined(PETSC_USE_DEBUG) 392aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 3939371c9d4SSatish Balay { 3949371c9d4SSatish Balay PetscInt data; 3959566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data)); 39608401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 397fa46199cSSatish Balay } 39848e59246SSatish Balay #else 39908401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 400a5eb4965SSatish Balay #endif 40148e59246SSatish Balay #endif 402aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 4039566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col)); 404fa46199cSSatish Balay col = (col - 1) / bs; 40548e59246SSatish Balay #else 406a5eb4965SSatish Balay col = (baij->colmap[in[j]] - 1) / bs; 40748e59246SSatish Balay #endif 4080e9bae81SBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->B->data))->nonew) { 4099566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 410ab26458aSBarry Smith col = in[j]; 4115f80ce2aSJacob Faibussowitsch } else PetscCheck(col >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Inserting a new blocked indexed nonzero block (%" PetscInt_FMT ", %" PetscInt_FMT ") into matrix", im[i], in[j]); 412db4deed7SKarl Rupp } else col = in[j]; 4139566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 414ab26458aSBarry Smith } 415ab26458aSBarry Smith } 416d64ed03dSBarry Smith } else { 4175f80ce2aSJacob Faibussowitsch PetscCheck(!mat->nooffprocentries, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Setting off process block indexed row %" PetscInt_FMT " even though MatSetOption(,MAT_NO_OFF_PROC_ENTRIES,PETSC_TRUE) was set", im[i]); 418ab26458aSBarry Smith if (!baij->donotstash) { 419ff2fd236SBarry Smith if (roworiented) { 4209566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 421ff2fd236SBarry Smith } else { 4229566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 423ff2fd236SBarry Smith } 424abef11f7SSatish Balay } 425ab26458aSBarry Smith } 426ab26458aSBarry Smith } 4273a40ed3dSBarry Smith PetscFunctionReturn(0); 428ab26458aSBarry Smith } 4296fa18ffdSBarry Smith 4300bdbc534SSatish Balay #define HASH_KEY 0.6180339887 431b24ad042SBarry Smith #define HASH(size, key, tmp) (tmp = (key)*HASH_KEY, (PetscInt)((size) * (tmp - (PetscInt)tmp))) 432b24ad042SBarry Smith /* #define HASH(size,key) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 433b24ad042SBarry Smith /* #define HASH(size,key,tmp) ((PetscInt)((size)*fmod(((key)*HASH_KEY),1))) */ 4349371c9d4SSatish Balay PetscErrorCode MatSetValues_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) { 4350bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 436ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 437b24ad042SBarry Smith PetscInt i, j, row, col; 438d0f46423SBarry Smith PetscInt rstart_orig = mat->rmap->rstart; 439d0f46423SBarry Smith PetscInt rend_orig = mat->rmap->rend, Nbs = baij->Nbs; 440d0f46423SBarry Smith PetscInt h1, key, size = baij->ht_size, bs = mat->rmap->bs, *HT = baij->ht, idx; 441329f5518SBarry Smith PetscReal tmp; 4423eda8832SBarry Smith MatScalar **HD = baij->hd, value; 443b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 4440bdbc534SSatish Balay 4450bdbc534SSatish Balay PetscFunctionBegin; 4460bdbc534SSatish Balay for (i = 0; i < m; i++) { 44776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 4485f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row"); 4495f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], mat->rmap->N - 1); 45076bd3646SJed Brown } 4510bdbc534SSatish Balay row = im[i]; 452c2760754SSatish Balay if (row >= rstart_orig && row < rend_orig) { 4530bdbc534SSatish Balay for (j = 0; j < n; j++) { 4540bdbc534SSatish Balay col = in[j]; 455db4deed7SKarl Rupp if (roworiented) value = v[i * n + j]; 456db4deed7SKarl Rupp else value = v[i + j * m]; 457b24ad042SBarry Smith /* Look up PetscInto the Hash Table */ 458c2760754SSatish Balay key = (row / bs) * Nbs + (col / bs) + 1; 459c2760754SSatish Balay h1 = HASH(size, key, tmp); 4600bdbc534SSatish Balay 461c2760754SSatish Balay idx = h1; 46276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 463187ce0cbSSatish Balay insert_ct++; 464187ce0cbSSatish Balay total_ct++; 465187ce0cbSSatish Balay if (HT[idx] != key) { 4669371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 4679371c9d4SSatish Balay ; 468187ce0cbSSatish Balay if (idx == size) { 4699371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 4709371c9d4SSatish Balay ; 4715f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 472187ce0cbSSatish Balay } 473187ce0cbSSatish Balay } 47476bd3646SJed Brown } else if (HT[idx] != key) { 4759371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 4769371c9d4SSatish Balay ; 477c2760754SSatish Balay if (idx == size) { 4789371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 4799371c9d4SSatish Balay ; 4805f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 481c2760754SSatish Balay } 482c2760754SSatish Balay } 483c2760754SSatish Balay /* A HASH table entry is found, so insert the values at the correct address */ 484c2760754SSatish Balay if (addv == ADD_VALUES) *(HD[idx] + (col % bs) * bs + (row % bs)) += value; 485c2760754SSatish Balay else *(HD[idx] + (col % bs) * bs + (row % bs)) = value; 4860bdbc534SSatish Balay } 48726fbe8dcSKarl Rupp } else if (!baij->donotstash) { 488ff2fd236SBarry Smith if (roworiented) { 4899566063dSJacob Faibussowitsch PetscCall(MatStashValuesRow_Private(&mat->stash, im[i], n, in, v + i * n, PETSC_FALSE)); 490ff2fd236SBarry Smith } else { 4919566063dSJacob Faibussowitsch PetscCall(MatStashValuesCol_Private(&mat->stash, im[i], n, in, v + i, m, PETSC_FALSE)); 4920bdbc534SSatish Balay } 4930bdbc534SSatish Balay } 4940bdbc534SSatish Balay } 49576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 496abf3b562SBarry Smith baij->ht_total_ct += total_ct; 497abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 49876bd3646SJed Brown } 4990bdbc534SSatish Balay PetscFunctionReturn(0); 5000bdbc534SSatish Balay } 5010bdbc534SSatish Balay 5029371c9d4SSatish Balay PetscErrorCode MatSetValuesBlocked_MPIBAIJ_HT(Mat mat, PetscInt m, const PetscInt im[], PetscInt n, const PetscInt in[], const PetscScalar v[], InsertMode addv) { 5030bdbc534SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 504ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 505b24ad042SBarry Smith PetscInt i, j, ii, jj, row, col; 506899cda47SBarry Smith PetscInt rstart = baij->rstartbs; 507d0f46423SBarry Smith PetscInt rend = mat->rmap->rend, stepval, bs = mat->rmap->bs, bs2 = baij->bs2, nbs2 = n * bs2; 508b24ad042SBarry Smith PetscInt h1, key, size = baij->ht_size, idx, *HT = baij->ht, Nbs = baij->Nbs; 509329f5518SBarry Smith PetscReal tmp; 5103eda8832SBarry Smith MatScalar **HD = baij->hd, *baij_a; 511dd6ea824SBarry Smith const PetscScalar *v_t, *value; 512b24ad042SBarry Smith PetscInt total_ct = baij->ht_total_ct, insert_ct = baij->ht_insert_ct; 5130bdbc534SSatish Balay 514d0a41580SSatish Balay PetscFunctionBegin; 51526fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 51626fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 51726fbe8dcSKarl Rupp 5180bdbc534SSatish Balay for (i = 0; i < m; i++) { 51976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 5205f80ce2aSJacob Faibussowitsch PetscCheck(im[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Negative row: %" PetscInt_FMT, im[i]); 5215f80ce2aSJacob Faibussowitsch PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 52276bd3646SJed Brown } 5230bdbc534SSatish Balay row = im[i]; 524ab715e2cSSatish Balay v_t = v + i * nbs2; 525c2760754SSatish Balay if (row >= rstart && row < rend) { 5260bdbc534SSatish Balay for (j = 0; j < n; j++) { 5270bdbc534SSatish Balay col = in[j]; 5280bdbc534SSatish Balay 5290bdbc534SSatish Balay /* Look up into the Hash Table */ 530c2760754SSatish Balay key = row * Nbs + col + 1; 531c2760754SSatish Balay h1 = HASH(size, key, tmp); 5320bdbc534SSatish Balay 533c2760754SSatish Balay idx = h1; 53476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 535187ce0cbSSatish Balay total_ct++; 536187ce0cbSSatish Balay insert_ct++; 537187ce0cbSSatish Balay if (HT[idx] != key) { 5389371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++, total_ct++) 5399371c9d4SSatish Balay ; 540187ce0cbSSatish Balay if (idx == size) { 5419371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++, total_ct++) 5429371c9d4SSatish Balay ; 5435f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 544187ce0cbSSatish Balay } 545187ce0cbSSatish Balay } 54676bd3646SJed Brown } else if (HT[idx] != key) { 5479371c9d4SSatish Balay for (idx = h1; (idx < size) && (HT[idx] != key); idx++) 5489371c9d4SSatish Balay ; 549c2760754SSatish Balay if (idx == size) { 5509371c9d4SSatish Balay for (idx = 0; (idx < h1) && (HT[idx] != key); idx++) 5519371c9d4SSatish Balay ; 5525f80ce2aSJacob Faibussowitsch PetscCheck(idx != h1, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "(%" PetscInt_FMT ",%" PetscInt_FMT ") has no entry in the hash table", row, col); 553c2760754SSatish Balay } 554c2760754SSatish Balay } 555c2760754SSatish Balay baij_a = HD[idx]; 5560bdbc534SSatish Balay if (roworiented) { 557c2760754SSatish Balay /*value = v + i*(stepval+bs)*bs + j*bs;*/ 558187ce0cbSSatish Balay /* value = v + (i*(stepval+bs)+j)*bs; */ 559187ce0cbSSatish Balay value = v_t; 560187ce0cbSSatish Balay v_t += bs; 561fef45726SSatish Balay if (addv == ADD_VALUES) { 562c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 5639371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { baij_a[jj] += *value++; } 564b4cc0f5aSSatish Balay } 565fef45726SSatish Balay } else { 566c2760754SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval) { 5679371c9d4SSatish Balay for (jj = ii; jj < bs2; jj += bs) { baij_a[jj] = *value++; } 568fef45726SSatish Balay } 569fef45726SSatish Balay } 5700bdbc534SSatish Balay } else { 5710bdbc534SSatish Balay value = v + j * (stepval + bs) * bs + i * bs; 572fef45726SSatish Balay if (addv == ADD_VALUES) { 573b4cc0f5aSSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 5749371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { baij_a[jj] += *value++; } 575fef45726SSatish Balay } 576fef45726SSatish Balay } else { 577fef45726SSatish Balay for (ii = 0; ii < bs; ii++, value += stepval, baij_a += bs) { 5789371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { baij_a[jj] = *value++; } 579b4cc0f5aSSatish Balay } 5800bdbc534SSatish Balay } 5810bdbc534SSatish Balay } 5820bdbc534SSatish Balay } 5830bdbc534SSatish Balay } else { 5840bdbc534SSatish Balay if (!baij->donotstash) { 5850bdbc534SSatish Balay if (roworiented) { 5869566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5870bdbc534SSatish Balay } else { 5889566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 5890bdbc534SSatish Balay } 5900bdbc534SSatish Balay } 5910bdbc534SSatish Balay } 5920bdbc534SSatish Balay } 59376bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { 594abf3b562SBarry Smith baij->ht_total_ct += total_ct; 595abf3b562SBarry Smith baij->ht_insert_ct += insert_ct; 59676bd3646SJed Brown } 5970bdbc534SSatish Balay PetscFunctionReturn(0); 5980bdbc534SSatish Balay } 599133cdb44SSatish Balay 6009371c9d4SSatish Balay PetscErrorCode MatGetValues_MPIBAIJ(Mat mat, PetscInt m, const PetscInt idxm[], PetscInt n, const PetscInt idxn[], PetscScalar v[]) { 601d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 602d0f46423SBarry Smith PetscInt bs = mat->rmap->bs, i, j, bsrstart = mat->rmap->rstart, bsrend = mat->rmap->rend; 603d0f46423SBarry Smith PetscInt bscstart = mat->cmap->rstart, bscend = mat->cmap->rend, row, col, data; 604d6de1c52SSatish Balay 605133cdb44SSatish Balay PetscFunctionBegin; 606d6de1c52SSatish Balay for (i = 0; i < m; i++) { 60754c59aa7SJacob Faibussowitsch if (idxm[i] < 0) continue; /* negative row */ 60854c59aa7SJacob Faibussowitsch PetscCheck(idxm[i] < mat->rmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large: row %" PetscInt_FMT " max %" PetscInt_FMT, idxm[i], mat->rmap->N - 1); 609d6de1c52SSatish Balay if (idxm[i] >= bsrstart && idxm[i] < bsrend) { 610d6de1c52SSatish Balay row = idxm[i] - bsrstart; 611d6de1c52SSatish Balay for (j = 0; j < n; j++) { 61254c59aa7SJacob Faibussowitsch if (idxn[j] < 0) continue; /* negative column */ 61354c59aa7SJacob Faibussowitsch PetscCheck(idxn[j] < mat->cmap->N, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large: col %" PetscInt_FMT " max %" PetscInt_FMT, idxn[j], mat->cmap->N - 1); 614d6de1c52SSatish Balay if (idxn[j] >= bscstart && idxn[j] < bscend) { 615d6de1c52SSatish Balay col = idxn[j] - bscstart; 6169566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->A, 1, &row, 1, &col, v + i * n + j)); 617d64ed03dSBarry Smith } else { 618*48a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 619aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 6209566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, idxn[j] / bs + 1, &data)); 621fa46199cSSatish Balay data--; 62248e59246SSatish Balay #else 62348e59246SSatish Balay data = baij->colmap[idxn[j] / bs] - 1; 62448e59246SSatish Balay #endif 62548e59246SSatish Balay if ((data < 0) || (baij->garray[data / bs] != idxn[j] / bs)) *(v + i * n + j) = 0.0; 626d9d09a02SSatish Balay else { 62748e59246SSatish Balay col = data + idxn[j] % bs; 6289566063dSJacob Faibussowitsch PetscCall(MatGetValues_SeqBAIJ(baij->B, 1, &row, 1, &col, v + i * n + j)); 629d6de1c52SSatish Balay } 630d6de1c52SSatish Balay } 631d6de1c52SSatish Balay } 632f23aa3ddSBarry Smith } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local values currently supported"); 633d6de1c52SSatish Balay } 6343a40ed3dSBarry Smith PetscFunctionReturn(0); 635d6de1c52SSatish Balay } 636d6de1c52SSatish Balay 6379371c9d4SSatish Balay PetscErrorCode MatNorm_MPIBAIJ(Mat mat, NormType type, PetscReal *nrm) { 638d6de1c52SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 639d6de1c52SSatish Balay Mat_SeqBAIJ *amat = (Mat_SeqBAIJ *)baij->A->data, *bmat = (Mat_SeqBAIJ *)baij->B->data; 640d0f46423SBarry Smith PetscInt i, j, bs2 = baij->bs2, bs = baij->A->rmap->bs, nz, row, col; 641329f5518SBarry Smith PetscReal sum = 0.0; 6423eda8832SBarry Smith MatScalar *v; 643d6de1c52SSatish Balay 644d64ed03dSBarry Smith PetscFunctionBegin; 645d6de1c52SSatish Balay if (baij->size == 1) { 6469566063dSJacob Faibussowitsch PetscCall(MatNorm(baij->A, type, nrm)); 647d6de1c52SSatish Balay } else { 648d6de1c52SSatish Balay if (type == NORM_FROBENIUS) { 649d6de1c52SSatish Balay v = amat->a; 6508a62d963SHong Zhang nz = amat->nz * bs2; 6518a62d963SHong Zhang for (i = 0; i < nz; i++) { 6529371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 6539371c9d4SSatish Balay v++; 654d6de1c52SSatish Balay } 655d6de1c52SSatish Balay v = bmat->a; 6568a62d963SHong Zhang nz = bmat->nz * bs2; 6578a62d963SHong Zhang for (i = 0; i < nz; i++) { 6589371c9d4SSatish Balay sum += PetscRealPart(PetscConj(*v) * (*v)); 6599371c9d4SSatish Balay v++; 660d6de1c52SSatish Balay } 6611c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 6628f1a2a5eSBarry Smith *nrm = PetscSqrtReal(*nrm); 6638a62d963SHong Zhang } else if (type == NORM_1) { /* max column sum */ 6648a62d963SHong Zhang PetscReal *tmp, *tmp2; 665899cda47SBarry Smith PetscInt *jj, *garray = baij->garray, cstart = baij->rstartbs; 6669566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(mat->cmap->N, &tmp)); 6679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(mat->cmap->N, &tmp2)); 6689371c9d4SSatish Balay v = amat->a; 6699371c9d4SSatish Balay jj = amat->j; 6708a62d963SHong Zhang for (i = 0; i < amat->nz; i++) { 6718a62d963SHong Zhang for (j = 0; j < bs; j++) { 6728a62d963SHong Zhang col = bs * (cstart + *jj) + j; /* column index */ 6738a62d963SHong Zhang for (row = 0; row < bs; row++) { 6749371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 6759371c9d4SSatish Balay v++; 6768a62d963SHong Zhang } 6778a62d963SHong Zhang } 6788a62d963SHong Zhang jj++; 6798a62d963SHong Zhang } 6809371c9d4SSatish Balay v = bmat->a; 6819371c9d4SSatish Balay jj = bmat->j; 6828a62d963SHong Zhang for (i = 0; i < bmat->nz; i++) { 6838a62d963SHong Zhang for (j = 0; j < bs; j++) { 6848a62d963SHong Zhang col = bs * garray[*jj] + j; 6858a62d963SHong Zhang for (row = 0; row < bs; row++) { 6869371c9d4SSatish Balay tmp[col] += PetscAbsScalar(*v); 6879371c9d4SSatish Balay v++; 6888a62d963SHong Zhang } 6898a62d963SHong Zhang } 6908a62d963SHong Zhang jj++; 6918a62d963SHong Zhang } 6921c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(tmp, tmp2, mat->cmap->N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)mat))); 6938a62d963SHong Zhang *nrm = 0.0; 694d0f46423SBarry Smith for (j = 0; j < mat->cmap->N; j++) { 6958a62d963SHong Zhang if (tmp2[j] > *nrm) *nrm = tmp2[j]; 6968a62d963SHong Zhang } 6979566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp)); 6989566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp2)); 6998a62d963SHong Zhang } else if (type == NORM_INFINITY) { /* max row sum */ 700577dd1f9SKris Buschelman PetscReal *sums; 7019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &sums)); 7028a62d963SHong Zhang sum = 0.0; 7038a62d963SHong Zhang for (j = 0; j < amat->mbs; j++) { 7048a62d963SHong Zhang for (row = 0; row < bs; row++) sums[row] = 0.0; 7058a62d963SHong Zhang v = amat->a + bs2 * amat->i[j]; 7068a62d963SHong Zhang nz = amat->i[j + 1] - amat->i[j]; 7078a62d963SHong Zhang for (i = 0; i < nz; i++) { 7088a62d963SHong Zhang for (col = 0; col < bs; col++) { 7098a62d963SHong Zhang for (row = 0; row < bs; row++) { 7109371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7119371c9d4SSatish Balay v++; 7128a62d963SHong Zhang } 7138a62d963SHong Zhang } 7148a62d963SHong Zhang } 7158a62d963SHong Zhang v = bmat->a + bs2 * bmat->i[j]; 7168a62d963SHong Zhang nz = bmat->i[j + 1] - bmat->i[j]; 7178a62d963SHong Zhang for (i = 0; i < nz; i++) { 7188a62d963SHong Zhang for (col = 0; col < bs; col++) { 7198a62d963SHong Zhang for (row = 0; row < bs; row++) { 7209371c9d4SSatish Balay sums[row] += PetscAbsScalar(*v); 7219371c9d4SSatish Balay v++; 7228a62d963SHong Zhang } 7238a62d963SHong Zhang } 7248a62d963SHong Zhang } 7258a62d963SHong Zhang for (row = 0; row < bs; row++) { 7268a62d963SHong Zhang if (sums[row] > sum) sum = sums[row]; 7278a62d963SHong Zhang } 7288a62d963SHong Zhang } 7291c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&sum, nrm, 1, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)mat))); 7309566063dSJacob Faibussowitsch PetscCall(PetscFree(sums)); 731ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)mat), PETSC_ERR_SUP, "No support for this norm yet"); 732d64ed03dSBarry Smith } 7333a40ed3dSBarry Smith PetscFunctionReturn(0); 734d6de1c52SSatish Balay } 73557b952d6SSatish Balay 736fef45726SSatish Balay /* 737fef45726SSatish Balay Creates the hash table, and sets the table 738fef45726SSatish Balay This table is created only once. 739fef45726SSatish Balay If new entried need to be added to the matrix 740fef45726SSatish Balay then the hash table has to be destroyed and 741fef45726SSatish Balay recreated. 742fef45726SSatish Balay */ 7439371c9d4SSatish Balay PetscErrorCode MatCreateHashTable_MPIBAIJ_Private(Mat mat, PetscReal factor) { 744596b8d2eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 745596b8d2eSBarry Smith Mat A = baij->A, B = baij->B; 746596b8d2eSBarry Smith Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)A->data, *b = (Mat_SeqBAIJ *)B->data; 747b24ad042SBarry Smith PetscInt i, j, k, nz = a->nz + b->nz, h1, *ai = a->i, *aj = a->j, *bi = b->i, *bj = b->j; 748fca92195SBarry Smith PetscInt ht_size, bs2 = baij->bs2, rstart = baij->rstartbs; 749899cda47SBarry Smith PetscInt cstart = baij->cstartbs, *garray = baij->garray, row, col, Nbs = baij->Nbs; 750b24ad042SBarry Smith PetscInt *HT, key; 7513eda8832SBarry Smith MatScalar **HD; 752329f5518SBarry Smith PetscReal tmp; 7536cf91177SBarry Smith #if defined(PETSC_USE_INFO) 754b24ad042SBarry Smith PetscInt ct = 0, max = 0; 7554a15367fSSatish Balay #endif 756fef45726SSatish Balay 757d64ed03dSBarry Smith PetscFunctionBegin; 758fca92195SBarry Smith if (baij->ht) PetscFunctionReturn(0); 759fef45726SSatish Balay 760fca92195SBarry Smith baij->ht_size = (PetscInt)(factor * nz); 761fca92195SBarry Smith ht_size = baij->ht_size; 7620bdbc534SSatish Balay 763fef45726SSatish Balay /* Allocate Memory for Hash Table */ 7649566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(ht_size, &baij->hd, ht_size, &baij->ht)); 765b9e4cc15SSatish Balay HD = baij->hd; 766a07cd24cSSatish Balay HT = baij->ht; 767b9e4cc15SSatish Balay 768596b8d2eSBarry Smith /* Loop Over A */ 7690bdbc534SSatish Balay for (i = 0; i < a->mbs; i++) { 770596b8d2eSBarry Smith for (j = ai[i]; j < ai[i + 1]; j++) { 7710bdbc534SSatish Balay row = i + rstart; 7720bdbc534SSatish Balay col = aj[j] + cstart; 773596b8d2eSBarry Smith 774187ce0cbSSatish Balay key = row * Nbs + col + 1; 775fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 776fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 777fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 778fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 779fca92195SBarry Smith HD[(h1 + k) % ht_size] = a->a + j * bs2; 780596b8d2eSBarry Smith break; 7816cf91177SBarry Smith #if defined(PETSC_USE_INFO) 782187ce0cbSSatish Balay } else { 783187ce0cbSSatish Balay ct++; 784187ce0cbSSatish Balay #endif 785596b8d2eSBarry Smith } 786187ce0cbSSatish Balay } 7876cf91177SBarry Smith #if defined(PETSC_USE_INFO) 788187ce0cbSSatish Balay if (k > max) max = k; 789187ce0cbSSatish Balay #endif 790596b8d2eSBarry Smith } 791596b8d2eSBarry Smith } 792596b8d2eSBarry Smith /* Loop Over B */ 7930bdbc534SSatish Balay for (i = 0; i < b->mbs; i++) { 794596b8d2eSBarry Smith for (j = bi[i]; j < bi[i + 1]; j++) { 7950bdbc534SSatish Balay row = i + rstart; 7960bdbc534SSatish Balay col = garray[bj[j]]; 797187ce0cbSSatish Balay key = row * Nbs + col + 1; 798fca92195SBarry Smith h1 = HASH(ht_size, key, tmp); 799fca92195SBarry Smith for (k = 0; k < ht_size; k++) { 800fca92195SBarry Smith if (!HT[(h1 + k) % ht_size]) { 801fca92195SBarry Smith HT[(h1 + k) % ht_size] = key; 802fca92195SBarry Smith HD[(h1 + k) % ht_size] = b->a + j * bs2; 803596b8d2eSBarry Smith break; 8046cf91177SBarry Smith #if defined(PETSC_USE_INFO) 805187ce0cbSSatish Balay } else { 806187ce0cbSSatish Balay ct++; 807187ce0cbSSatish Balay #endif 808596b8d2eSBarry Smith } 809187ce0cbSSatish Balay } 8106cf91177SBarry Smith #if defined(PETSC_USE_INFO) 811187ce0cbSSatish Balay if (k > max) max = k; 812187ce0cbSSatish Balay #endif 813596b8d2eSBarry Smith } 814596b8d2eSBarry Smith } 815596b8d2eSBarry Smith 816596b8d2eSBarry Smith /* Print Summary */ 8176cf91177SBarry Smith #if defined(PETSC_USE_INFO) 818fca92195SBarry Smith for (i = 0, j = 0; i < ht_size; i++) { 81926fbe8dcSKarl Rupp if (HT[i]) j++; 820c38d4ed2SBarry Smith } 8219566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Search = %5.2g,max search = %" PetscInt_FMT "\n", (!j) ? (double)0.0 : (double)(((PetscReal)(ct + j)) / (double)j), max)); 822187ce0cbSSatish Balay #endif 8233a40ed3dSBarry Smith PetscFunctionReturn(0); 824596b8d2eSBarry Smith } 82557b952d6SSatish Balay 8269371c9d4SSatish Balay PetscErrorCode MatAssemblyBegin_MPIBAIJ(Mat mat, MatAssemblyType mode) { 827bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 828b24ad042SBarry Smith PetscInt nstash, reallocs; 829bbb85fb3SSatish Balay 830bbb85fb3SSatish Balay PetscFunctionBegin; 83126fbe8dcSKarl Rupp if (baij->donotstash || mat->nooffprocentries) PetscFunctionReturn(0); 832bbb85fb3SSatish Balay 8339566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->stash, mat->rmap->range)); 8349566063dSJacob Faibussowitsch PetscCall(MatStashScatterBegin_Private(mat, &mat->bstash, baij->rangebs)); 8359566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->stash, &nstash, &reallocs)); 8369566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Stash has %" PetscInt_FMT " entries,uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 8379566063dSJacob Faibussowitsch PetscCall(MatStashGetInfo_Private(&mat->bstash, &nstash, &reallocs)); 8389566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Block-Stash has %" PetscInt_FMT " entries, uses %" PetscInt_FMT " mallocs.\n", nstash, reallocs)); 839bbb85fb3SSatish Balay PetscFunctionReturn(0); 840bbb85fb3SSatish Balay } 841bbb85fb3SSatish Balay 8429371c9d4SSatish Balay PetscErrorCode MatAssemblyEnd_MPIBAIJ(Mat mat, MatAssemblyType mode) { 843bbb85fb3SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 84491c97fd4SSatish Balay Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)baij->A->data; 845b24ad042SBarry Smith PetscInt i, j, rstart, ncols, flg, bs2 = baij->bs2; 846e44c0bd4SBarry Smith PetscInt *row, *col; 847ace3abfcSBarry Smith PetscBool r1, r2, r3, other_disassembled; 8483eda8832SBarry Smith MatScalar *val; 849b24ad042SBarry Smith PetscMPIInt n; 850bbb85fb3SSatish Balay 851bbb85fb3SSatish Balay PetscFunctionBegin; 8525fd66863SKarl Rupp /* do not use 'b=(Mat_SeqBAIJ*)baij->B->data' as B can be reset in disassembly */ 8534cb17eb5SBarry Smith if (!baij->donotstash && !mat->nooffprocentries) { 854a2d1c673SSatish Balay while (1) { 8559566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->stash, &n, &row, &col, &val, &flg)); 856a2d1c673SSatish Balay if (!flg) break; 857a2d1c673SSatish Balay 858bbb85fb3SSatish Balay for (i = 0; i < n;) { 859bbb85fb3SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 86026fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 86126fbe8dcSKarl Rupp if (row[j] != rstart) break; 86226fbe8dcSKarl Rupp } 863bbb85fb3SSatish Balay if (j < n) ncols = j - i; 864bbb85fb3SSatish Balay else ncols = n - i; 865bbb85fb3SSatish Balay /* Now assemble all these values with a single function call */ 8669566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i, mat->insertmode)); 867bbb85fb3SSatish Balay i = j; 868bbb85fb3SSatish Balay } 869bbb85fb3SSatish Balay } 8709566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->stash)); 871a2d1c673SSatish Balay /* Now process the block-stash. Since the values are stashed column-oriented, 872a2d1c673SSatish Balay set the roworiented flag to column oriented, and after MatSetValues() 873a2d1c673SSatish Balay restore the original flags */ 874a2d1c673SSatish Balay r1 = baij->roworiented; 875a2d1c673SSatish Balay r2 = a->roworiented; 87691c97fd4SSatish Balay r3 = ((Mat_SeqBAIJ *)baij->B->data)->roworiented; 87726fbe8dcSKarl Rupp 8787c922b88SBarry Smith baij->roworiented = PETSC_FALSE; 8797c922b88SBarry Smith a->roworiented = PETSC_FALSE; 88026fbe8dcSKarl Rupp 88191c97fd4SSatish Balay (((Mat_SeqBAIJ *)baij->B->data))->roworiented = PETSC_FALSE; /* b->roworiented */ 882a2d1c673SSatish Balay while (1) { 8839566063dSJacob Faibussowitsch PetscCall(MatStashScatterGetMesg_Private(&mat->bstash, &n, &row, &col, &val, &flg)); 884a2d1c673SSatish Balay if (!flg) break; 885a2d1c673SSatish Balay 886a2d1c673SSatish Balay for (i = 0; i < n;) { 887a2d1c673SSatish Balay /* Now identify the consecutive vals belonging to the same row */ 88826fbe8dcSKarl Rupp for (j = i, rstart = row[j]; j < n; j++) { 88926fbe8dcSKarl Rupp if (row[j] != rstart) break; 89026fbe8dcSKarl Rupp } 891a2d1c673SSatish Balay if (j < n) ncols = j - i; 892a2d1c673SSatish Balay else ncols = n - i; 8939566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(mat, 1, row + i, ncols, col + i, val + i * bs2, mat->insertmode)); 894a2d1c673SSatish Balay i = j; 895a2d1c673SSatish Balay } 896a2d1c673SSatish Balay } 8979566063dSJacob Faibussowitsch PetscCall(MatStashScatterEnd_Private(&mat->bstash)); 89826fbe8dcSKarl Rupp 899a2d1c673SSatish Balay baij->roworiented = r1; 900a2d1c673SSatish Balay a->roworiented = r2; 90126fbe8dcSKarl Rupp 90291c97fd4SSatish Balay ((Mat_SeqBAIJ *)baij->B->data)->roworiented = r3; /* b->roworiented */ 903bbb85fb3SSatish Balay } 904bbb85fb3SSatish Balay 9059566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->A, mode)); 9069566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->A, mode)); 907bbb85fb3SSatish Balay 908bbb85fb3SSatish Balay /* determine if any processor has disassembled, if so we must 9096aad120cSJose E. Roman also disassemble ourselves, in order that we may reassemble. */ 910bbb85fb3SSatish Balay /* 911bbb85fb3SSatish Balay if nonzero structure of submatrix B cannot change then we know that 912bbb85fb3SSatish Balay no processor disassembled thus we can skip this stuff 913bbb85fb3SSatish Balay */ 914bbb85fb3SSatish Balay if (!((Mat_SeqBAIJ *)baij->B->data)->nonew) { 9155f9db2b2SJunchao Zhang PetscCall(MPIU_Allreduce(&mat->was_assembled, &other_disassembled, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)mat))); 916*48a46eb9SPierre Jolivet if (mat->was_assembled && !other_disassembled) PetscCall(MatDisAssemble_MPIBAIJ(mat)); 917bbb85fb3SSatish Balay } 918bbb85fb3SSatish Balay 919*48a46eb9SPierre Jolivet if (!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) PetscCall(MatSetUpMultiply_MPIBAIJ(mat)); 9209566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(baij->B, mode)); 9219566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(baij->B, mode)); 922bbb85fb3SSatish Balay 9236cf91177SBarry Smith #if defined(PETSC_USE_INFO) 924bbb85fb3SSatish Balay if (baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9259566063dSJacob Faibussowitsch PetscCall(PetscInfo(mat, "Average Hash Table Search in MatSetValues = %5.2f\n", (double)((PetscReal)baij->ht_total_ct) / baij->ht_insert_ct)); 92626fbe8dcSKarl Rupp 927bbb85fb3SSatish Balay baij->ht_total_ct = 0; 928bbb85fb3SSatish Balay baij->ht_insert_ct = 0; 929bbb85fb3SSatish Balay } 930bbb85fb3SSatish Balay #endif 931bbb85fb3SSatish Balay if (baij->ht_flag && !baij->ht && mode == MAT_FINAL_ASSEMBLY) { 9329566063dSJacob Faibussowitsch PetscCall(MatCreateHashTable_MPIBAIJ_Private(mat, baij->ht_fact)); 93326fbe8dcSKarl Rupp 934bbb85fb3SSatish Balay mat->ops->setvalues = MatSetValues_MPIBAIJ_HT; 935bbb85fb3SSatish Balay mat->ops->setvaluesblocked = MatSetValuesBlocked_MPIBAIJ_HT; 936bbb85fb3SSatish Balay } 937bbb85fb3SSatish Balay 9389566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 93926fbe8dcSKarl Rupp 940f4259b30SLisandro Dalcin baij->rowvalues = NULL; 9414f9cfa9eSBarry Smith 9424f9cfa9eSBarry Smith /* if no new nonzero locations are allowed in matrix then only set the matrix state the first time through */ 9434f9cfa9eSBarry Smith if ((!mat->was_assembled && mode == MAT_FINAL_ASSEMBLY) || !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 944e56f5c9eSBarry Smith PetscObjectState state = baij->A->nonzerostate + baij->B->nonzerostate; 9451c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &mat->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)mat))); 946e56f5c9eSBarry Smith } 947bbb85fb3SSatish Balay PetscFunctionReturn(0); 948bbb85fb3SSatish Balay } 94957b952d6SSatish Balay 9507da1fb6eSBarry Smith extern PetscErrorCode MatView_SeqBAIJ(Mat, PetscViewer); 9519804daf3SBarry Smith #include <petscdraw.h> 9529371c9d4SSatish Balay static PetscErrorCode MatView_MPIBAIJ_ASCIIorDraworSocket(Mat mat, PetscViewer viewer) { 95357b952d6SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 9547da1fb6eSBarry Smith PetscMPIInt rank = baij->rank; 955d0f46423SBarry Smith PetscInt bs = mat->rmap->bs; 956ace3abfcSBarry Smith PetscBool iascii, isdraw; 957b0a32e0cSBarry Smith PetscViewer sviewer; 958f3ef73ceSBarry Smith PetscViewerFormat format; 95957b952d6SSatish Balay 960d64ed03dSBarry Smith PetscFunctionBegin; 9619566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 9629566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 96332077d6dSBarry Smith if (iascii) { 9649566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 965456192e2SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 9664e220ebcSLois Curfman McInnes MatInfo info; 9679566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)mat), &rank)); 9689566063dSJacob Faibussowitsch PetscCall(MatGetInfo(mat, MAT_LOCAL, &info)); 9699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9709371c9d4SSatish Balay PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Local rows %" PetscInt_FMT " nz %" PetscInt_FMT " nz alloced %" PetscInt_FMT " bs %" PetscInt_FMT " mem %g\n", rank, mat->rmap->n, (PetscInt)info.nz_used, (PetscInt)info.nz_allocated, 9719371c9d4SSatish Balay mat->rmap->bs, (double)info.memory)); 9729566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->A, MAT_LOCAL, &info)); 9739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] on-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9749566063dSJacob Faibussowitsch PetscCall(MatGetInfo(baij->B, MAT_LOCAL, &info)); 9759566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] off-diagonal part: nz %" PetscInt_FMT " \n", rank, (PetscInt)info.nz_used)); 9769566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 9789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "Information on VecScatter used in matrix-vector product: \n")); 9799566063dSJacob Faibussowitsch PetscCall(VecScatterView(baij->Mvctx, viewer)); 9803a40ed3dSBarry Smith PetscFunctionReturn(0); 981fb9695e5SSatish Balay } else if (format == PETSC_VIEWER_ASCII_INFO) { 9829566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, " block size is %" PetscInt_FMT "\n", bs)); 9833a40ed3dSBarry Smith PetscFunctionReturn(0); 98404929863SHong Zhang } else if (format == PETSC_VIEWER_ASCII_FACTOR_INFO) { 98504929863SHong Zhang PetscFunctionReturn(0); 98657b952d6SSatish Balay } 98757b952d6SSatish Balay } 98857b952d6SSatish Balay 9890f5bd95cSBarry Smith if (isdraw) { 990b0a32e0cSBarry Smith PetscDraw draw; 991ace3abfcSBarry Smith PetscBool isnull; 9929566063dSJacob Faibussowitsch PetscCall(PetscViewerDrawGetDraw(viewer, 0, &draw)); 9939566063dSJacob Faibussowitsch PetscCall(PetscDrawIsNull(draw, &isnull)); 99445f3bb6eSLisandro Dalcin if (isnull) PetscFunctionReturn(0); 99557b952d6SSatish Balay } 99657b952d6SSatish Balay 9977da1fb6eSBarry Smith { 99857b952d6SSatish Balay /* assemble the entire matrix onto first processor. */ 99957b952d6SSatish Balay Mat A; 100057b952d6SSatish Balay Mat_SeqBAIJ *Aloc; 1001d0f46423SBarry Smith PetscInt M = mat->rmap->N, N = mat->cmap->N, *ai, *aj, col, i, j, k, *rvals, mbs = baij->mbs; 10023eda8832SBarry Smith MatScalar *a; 10033e219373SBarry Smith const char *matname; 100457b952d6SSatish Balay 1005f204ca49SKris Buschelman /* Here we are creating a temporary matrix, so will assume MPIBAIJ is acceptable */ 1006f204ca49SKris Buschelman /* Perhaps this should be the type of mat? */ 10079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)mat), &A)); 1008dd400576SPatrick Sanan if (rank == 0) { 10099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, M, N, M, N)); 1010d64ed03dSBarry Smith } else { 10119566063dSJacob Faibussowitsch PetscCall(MatSetSizes(A, 0, 0, M, N)); 101257b952d6SSatish Balay } 10139566063dSJacob Faibussowitsch PetscCall(MatSetType(A, MATMPIBAIJ)); 10149566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, mat->rmap->bs, 0, NULL, 0, NULL)); 10159566063dSJacob Faibussowitsch PetscCall(MatSetOption(A, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_FALSE)); 10169566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)A)); 101757b952d6SSatish Balay 101857b952d6SSatish Balay /* copy over the A part */ 101957b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 10209371c9d4SSatish Balay ai = Aloc->i; 10219371c9d4SSatish Balay aj = Aloc->j; 10229371c9d4SSatish Balay a = Aloc->a; 10239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 102457b952d6SSatish Balay 102557b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1026899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 102726fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 102857b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1029899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 103057b952d6SSatish Balay for (k = 0; k < bs; k++) { 10319566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10329371c9d4SSatish Balay col++; 10339371c9d4SSatish Balay a += bs; 103457b952d6SSatish Balay } 103557b952d6SSatish Balay } 103657b952d6SSatish Balay } 103757b952d6SSatish Balay /* copy over the B part */ 103857b952d6SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 10399371c9d4SSatish Balay ai = Aloc->i; 10409371c9d4SSatish Balay aj = Aloc->j; 10419371c9d4SSatish Balay a = Aloc->a; 104257b952d6SSatish Balay for (i = 0; i < mbs; i++) { 1043899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 104426fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 104557b952d6SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 104657b952d6SSatish Balay col = baij->garray[aj[j]] * bs; 104757b952d6SSatish Balay for (k = 0; k < bs; k++) { 10489566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(A, bs, rvals, 1, &col, a, INSERT_VALUES)); 10499371c9d4SSatish Balay col++; 10509371c9d4SSatish Balay a += bs; 105157b952d6SSatish Balay } 105257b952d6SSatish Balay } 105357b952d6SSatish Balay } 10549566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 10559566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 10569566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 105755843e3eSBarry Smith /* 105855843e3eSBarry Smith Everyone has to call to draw the matrix since the graphics waits are 1059b0a32e0cSBarry Smith synchronized across all processors that share the PetscDraw object 106055843e3eSBarry Smith */ 10619566063dSJacob Faibussowitsch PetscCall(PetscViewerGetSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetName((PetscObject)mat, &matname)); 1063dd400576SPatrick Sanan if (rank == 0) { 10649566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)((Mat_MPIBAIJ *)(A->data))->A, matname)); 10659566063dSJacob Faibussowitsch PetscCall(MatView_SeqBAIJ(((Mat_MPIBAIJ *)(A->data))->A, sviewer)); 106657b952d6SSatish Balay } 10679566063dSJacob Faibussowitsch PetscCall(PetscViewerRestoreSubViewer(viewer, PETSC_COMM_SELF, &sviewer)); 10689566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 10699566063dSJacob Faibussowitsch PetscCall(MatDestroy(&A)); 107057b952d6SSatish Balay } 10713a40ed3dSBarry Smith PetscFunctionReturn(0); 107257b952d6SSatish Balay } 107357b952d6SSatish Balay 1074618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 10759371c9d4SSatish Balay PetscErrorCode MatView_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) { 1076b51a4376SLisandro Dalcin Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)mat->data; 1077b51a4376SLisandro Dalcin Mat_SeqBAIJ *A = (Mat_SeqBAIJ *)aij->A->data; 1078b51a4376SLisandro Dalcin Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)aij->B->data; 1079b51a4376SLisandro Dalcin const PetscInt *garray = aij->garray; 1080b51a4376SLisandro Dalcin PetscInt header[4], M, N, m, rs, cs, bs, nz, cnt, i, j, ja, jb, k, l; 1081b51a4376SLisandro Dalcin PetscInt *rowlens, *colidxs; 1082b51a4376SLisandro Dalcin PetscScalar *matvals; 1083660746e0SBarry Smith 1084660746e0SBarry Smith PetscFunctionBegin; 10859566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 1086b51a4376SLisandro Dalcin 1087b51a4376SLisandro Dalcin M = mat->rmap->N; 1088b51a4376SLisandro Dalcin N = mat->cmap->N; 1089b51a4376SLisandro Dalcin m = mat->rmap->n; 1090b51a4376SLisandro Dalcin rs = mat->rmap->rstart; 1091b51a4376SLisandro Dalcin cs = mat->cmap->rstart; 1092b51a4376SLisandro Dalcin bs = mat->rmap->bs; 1093b51a4376SLisandro Dalcin nz = bs * bs * (A->nz + B->nz); 1094b51a4376SLisandro Dalcin 1095b51a4376SLisandro Dalcin /* write matrix header */ 1096660746e0SBarry Smith header[0] = MAT_FILE_CLASSID; 10979371c9d4SSatish Balay header[1] = M; 10989371c9d4SSatish Balay header[2] = N; 10999371c9d4SSatish Balay header[3] = nz; 11009566063dSJacob Faibussowitsch PetscCallMPI(MPI_Reduce(&nz, &header[3], 1, MPIU_INT, MPI_SUM, 0, PetscObjectComm((PetscObject)mat))); 11019566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWrite(viewer, header, 4, PETSC_INT)); 1102660746e0SBarry Smith 1103b51a4376SLisandro Dalcin /* fill in and store row lengths */ 11049566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m, &rowlens)); 1105b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) 11069371c9d4SSatish Balay for (j = 0; j < bs; j++) rowlens[cnt++] = bs * (A->i[i + 1] - A->i[i] + B->i[i + 1] - B->i[i]); 11079566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, rowlens, m, rs, M, PETSC_INT)); 11089566063dSJacob Faibussowitsch PetscCall(PetscFree(rowlens)); 1109660746e0SBarry Smith 1110b51a4376SLisandro Dalcin /* fill in and store column indices */ 11119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &colidxs)); 1112b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1113b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1114b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1115b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11169371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1117660746e0SBarry Smith } 1118b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11199371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * A->j[ja] + l + cs; 1120b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11219371c9d4SSatish Balay for (l = 0; l < bs; l++) colidxs[cnt++] = bs * garray[B->j[jb]] + l; 1122660746e0SBarry Smith } 1123660746e0SBarry Smith } 11245f80ce2aSJacob Faibussowitsch PetscCheck(cnt == nz, PETSC_COMM_SELF, PETSC_ERR_LIB, "Internal PETSc error: cnt = %" PetscInt_FMT " nz = %" PetscInt_FMT, cnt, nz); 11259566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, colidxs, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_INT)); 11269566063dSJacob Faibussowitsch PetscCall(PetscFree(colidxs)); 1127660746e0SBarry Smith 1128b51a4376SLisandro Dalcin /* fill in and store nonzero values */ 11299566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nz, &matvals)); 1130b51a4376SLisandro Dalcin for (cnt = 0, i = 0; i < A->mbs; i++) { 1131b51a4376SLisandro Dalcin for (k = 0; k < bs; k++) { 1132b51a4376SLisandro Dalcin for (jb = B->i[i]; jb < B->i[i + 1]; jb++) { 1133b51a4376SLisandro Dalcin if (garray[B->j[jb]] > cs / bs) break; 11349371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1135660746e0SBarry Smith } 1136b51a4376SLisandro Dalcin for (ja = A->i[i]; ja < A->i[i + 1]; ja++) 11379371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = A->a[bs * (bs * ja + l) + k]; 1138b51a4376SLisandro Dalcin for (; jb < B->i[i + 1]; jb++) 11399371c9d4SSatish Balay for (l = 0; l < bs; l++) matvals[cnt++] = B->a[bs * (bs * jb + l) + k]; 1140660746e0SBarry Smith } 1141b51a4376SLisandro Dalcin } 11429566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryWriteAll(viewer, matvals, nz, PETSC_DECIDE, PETSC_DECIDE, PETSC_SCALAR)); 11439566063dSJacob Faibussowitsch PetscCall(PetscFree(matvals)); 1144660746e0SBarry Smith 1145b51a4376SLisandro Dalcin /* write block size option to the viewer's .info file */ 11469566063dSJacob Faibussowitsch PetscCall(MatView_Binary_BlockSizes(mat, viewer)); 1147660746e0SBarry Smith PetscFunctionReturn(0); 1148660746e0SBarry Smith } 1149660746e0SBarry Smith 11509371c9d4SSatish Balay PetscErrorCode MatView_MPIBAIJ(Mat mat, PetscViewer viewer) { 1151ace3abfcSBarry Smith PetscBool iascii, isdraw, issocket, isbinary; 115257b952d6SSatish Balay 1153d64ed03dSBarry Smith PetscFunctionBegin; 11549566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 11559566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERDRAW, &isdraw)); 11569566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERSOCKET, &issocket)); 11579566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 1158660746e0SBarry Smith if (iascii || isdraw || issocket) { 11599566063dSJacob Faibussowitsch PetscCall(MatView_MPIBAIJ_ASCIIorDraworSocket(mat, viewer)); 11601baa6e33SBarry Smith } else if (isbinary) PetscCall(MatView_MPIBAIJ_Binary(mat, viewer)); 11613a40ed3dSBarry Smith PetscFunctionReturn(0); 116257b952d6SSatish Balay } 116357b952d6SSatish Balay 11649371c9d4SSatish Balay PetscErrorCode MatDestroy_MPIBAIJ(Mat mat) { 116579bdfe76SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 116679bdfe76SSatish Balay 1167d64ed03dSBarry Smith PetscFunctionBegin; 1168aa482453SBarry Smith #if defined(PETSC_USE_LOG) 1169c0aa6a63SJacob Faibussowitsch PetscLogObjectState((PetscObject)mat, "Rows=%" PetscInt_FMT ",Cols=%" PetscInt_FMT, mat->rmap->N, mat->cmap->N); 117079bdfe76SSatish Balay #endif 11719566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->stash)); 11729566063dSJacob Faibussowitsch PetscCall(MatStashDestroy_Private(&mat->bstash)); 11739566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->A)); 11749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&baij->B)); 1175aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 11769566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&baij->colmap)); 117748e59246SSatish Balay #else 11789566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->colmap)); 117948e59246SSatish Balay #endif 11809566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->garray)); 11819566063dSJacob Faibussowitsch PetscCall(VecDestroy(&baij->lvec)); 11829566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&baij->Mvctx)); 11839566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->rowvalues, baij->rowindices)); 11849566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->barray)); 11859566063dSJacob Faibussowitsch PetscCall(PetscFree2(baij->hd, baij->ht)); 11869566063dSJacob Faibussowitsch PetscCall(PetscFree(baij->rangebs)); 11879566063dSJacob Faibussowitsch PetscCall(PetscFree(mat->data)); 1188901853e0SKris Buschelman 11899566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)mat, NULL)); 11909566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatStoreValues_C", NULL)); 11919566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatRetrieveValues_C", NULL)); 11929566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocation_C", NULL)); 11939566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatMPIBAIJSetPreallocationCSR_C", NULL)); 11949566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatDiagonalScaleLocal_C", NULL)); 11959566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatSetHashTableFactor_C", NULL)); 11969566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpisbaij_C", NULL)); 11972e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiadj_C", NULL)); 11982e956fe4SStefano Zampini PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_mpiaij_C", NULL)); 11997ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 12009566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_hypre_C", NULL)); 12017ea3e4caSstefano_zampini #endif 12029566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)mat, "MatConvert_mpibaij_is_C", NULL)); 12033a40ed3dSBarry Smith PetscFunctionReturn(0); 120479bdfe76SSatish Balay } 120579bdfe76SSatish Balay 12069371c9d4SSatish Balay PetscErrorCode MatMult_MPIBAIJ(Mat A, Vec xx, Vec yy) { 1207cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1208b24ad042SBarry Smith PetscInt nt; 1209cee3aa6bSSatish Balay 1210d64ed03dSBarry Smith PetscFunctionBegin; 12119566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(xx, &nt)); 12125f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible partition of A and xx"); 12139566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(yy, &nt)); 12145f80ce2aSJacob Faibussowitsch PetscCheck(nt == A->rmap->n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Incompatible parition of A and yy"); 12159566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12169566063dSJacob Faibussowitsch PetscCall((*a->A->ops->mult)(a->A, xx, yy)); 12179566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12189566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, yy, yy)); 12193a40ed3dSBarry Smith PetscFunctionReturn(0); 1220cee3aa6bSSatish Balay } 1221cee3aa6bSSatish Balay 12229371c9d4SSatish Balay PetscErrorCode MatMultAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) { 1223cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1224d64ed03dSBarry Smith 1225d64ed03dSBarry Smith PetscFunctionBegin; 12269566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12279566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multadd)(a->A, xx, yy, zz)); 12289566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, xx, a->lvec, INSERT_VALUES, SCATTER_FORWARD)); 12299566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multadd)(a->B, a->lvec, zz, zz)); 12303a40ed3dSBarry Smith PetscFunctionReturn(0); 1231cee3aa6bSSatish Balay } 1232cee3aa6bSSatish Balay 12339371c9d4SSatish Balay PetscErrorCode MatMultTranspose_MPIBAIJ(Mat A, Vec xx, Vec yy) { 1234cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1235cee3aa6bSSatish Balay 1236d64ed03dSBarry Smith PetscFunctionBegin; 1237cee3aa6bSSatish Balay /* do nondiagonal part */ 12389566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1239cee3aa6bSSatish Balay /* do local part */ 12409566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtranspose)(a->A, xx, yy)); 1241e4a140f6SJunchao Zhang /* add partial results together */ 12429566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12439566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, yy, ADD_VALUES, SCATTER_REVERSE)); 12443a40ed3dSBarry Smith PetscFunctionReturn(0); 1245cee3aa6bSSatish Balay } 1246cee3aa6bSSatish Balay 12479371c9d4SSatish Balay PetscErrorCode MatMultTransposeAdd_MPIBAIJ(Mat A, Vec xx, Vec yy, Vec zz) { 1248cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1249cee3aa6bSSatish Balay 1250d64ed03dSBarry Smith PetscFunctionBegin; 1251cee3aa6bSSatish Balay /* do nondiagonal part */ 12529566063dSJacob Faibussowitsch PetscCall((*a->B->ops->multtranspose)(a->B, xx, a->lvec)); 1253cee3aa6bSSatish Balay /* do local part */ 12549566063dSJacob Faibussowitsch PetscCall((*a->A->ops->multtransposeadd)(a->A, xx, yy, zz)); 1255e4a140f6SJunchao Zhang /* add partial results together */ 12569566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12579566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(a->Mvctx, a->lvec, zz, ADD_VALUES, SCATTER_REVERSE)); 12583a40ed3dSBarry Smith PetscFunctionReturn(0); 1259cee3aa6bSSatish Balay } 1260cee3aa6bSSatish Balay 1261cee3aa6bSSatish Balay /* 1262cee3aa6bSSatish Balay This only works correctly for square matrices where the subblock A->A is the 1263cee3aa6bSSatish Balay diagonal block 1264cee3aa6bSSatish Balay */ 12659371c9d4SSatish Balay PetscErrorCode MatGetDiagonal_MPIBAIJ(Mat A, Vec v) { 1266d64ed03dSBarry Smith PetscFunctionBegin; 12675f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->N == A->cmap->N, PETSC_COMM_SELF, PETSC_ERR_SUP, "Supports only square matrix where A->A is diag block"); 12689566063dSJacob Faibussowitsch PetscCall(MatGetDiagonal(((Mat_MPIBAIJ *)A->data)->A, v)); 12693a40ed3dSBarry Smith PetscFunctionReturn(0); 1270cee3aa6bSSatish Balay } 1271cee3aa6bSSatish Balay 12729371c9d4SSatish Balay PetscErrorCode MatScale_MPIBAIJ(Mat A, PetscScalar aa) { 1273cee3aa6bSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1274d64ed03dSBarry Smith 1275d64ed03dSBarry Smith PetscFunctionBegin; 12769566063dSJacob Faibussowitsch PetscCall(MatScale(a->A, aa)); 12779566063dSJacob Faibussowitsch PetscCall(MatScale(a->B, aa)); 12783a40ed3dSBarry Smith PetscFunctionReturn(0); 1279cee3aa6bSSatish Balay } 1280026e39d0SSatish Balay 12819371c9d4SSatish Balay PetscErrorCode MatGetRow_MPIBAIJ(Mat matin, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) { 1282acdf5bf4SSatish Balay Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 128387828ca2SBarry Smith PetscScalar *vworkA, *vworkB, **pvA, **pvB, *v_p; 1284d0f46423SBarry Smith PetscInt bs = matin->rmap->bs, bs2 = mat->bs2, i, *cworkA, *cworkB, **pcA, **pcB; 1285d0f46423SBarry Smith PetscInt nztot, nzA, nzB, lrow, brstart = matin->rmap->rstart, brend = matin->rmap->rend; 1286899cda47SBarry Smith PetscInt *cmap, *idx_p, cstart = mat->cstartbs; 1287acdf5bf4SSatish Balay 1288d64ed03dSBarry Smith PetscFunctionBegin; 12895f80ce2aSJacob Faibussowitsch PetscCheck(row >= brstart && row < brend, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only local rows"); 12905f80ce2aSJacob Faibussowitsch PetscCheck(!mat->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Already active"); 1291acdf5bf4SSatish Balay mat->getrowactive = PETSC_TRUE; 1292acdf5bf4SSatish Balay 1293acdf5bf4SSatish Balay if (!mat->rowvalues && (idx || v)) { 1294acdf5bf4SSatish Balay /* 1295acdf5bf4SSatish Balay allocate enough space to hold information from the longest row. 1296acdf5bf4SSatish Balay */ 1297acdf5bf4SSatish Balay Mat_SeqBAIJ *Aa = (Mat_SeqBAIJ *)mat->A->data, *Ba = (Mat_SeqBAIJ *)mat->B->data; 1298b24ad042SBarry Smith PetscInt max = 1, mbs = mat->mbs, tmp; 1299bd16c2feSSatish Balay for (i = 0; i < mbs; i++) { 1300acdf5bf4SSatish Balay tmp = Aa->i[i + 1] - Aa->i[i] + Ba->i[i + 1] - Ba->i[i]; 130126fbe8dcSKarl Rupp if (max < tmp) max = tmp; 1302acdf5bf4SSatish Balay } 13039566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(max * bs2, &mat->rowvalues, max * bs2, &mat->rowindices)); 1304acdf5bf4SSatish Balay } 1305d9d09a02SSatish Balay lrow = row - brstart; 1306acdf5bf4SSatish Balay 13079371c9d4SSatish Balay pvA = &vworkA; 13089371c9d4SSatish Balay pcA = &cworkA; 13099371c9d4SSatish Balay pvB = &vworkB; 13109371c9d4SSatish Balay pcB = &cworkB; 13119371c9d4SSatish Balay if (!v) { 13129371c9d4SSatish Balay pvA = NULL; 13139371c9d4SSatish Balay pvB = NULL; 13149371c9d4SSatish Balay } 13159371c9d4SSatish Balay if (!idx) { 13169371c9d4SSatish Balay pcA = NULL; 13179371c9d4SSatish Balay if (!v) pcB = NULL; 13189371c9d4SSatish Balay } 13199566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->getrow)(mat->A, lrow, &nzA, pcA, pvA)); 13209566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->getrow)(mat->B, lrow, &nzB, pcB, pvB)); 1321acdf5bf4SSatish Balay nztot = nzA + nzB; 1322acdf5bf4SSatish Balay 1323acdf5bf4SSatish Balay cmap = mat->garray; 1324acdf5bf4SSatish Balay if (v || idx) { 1325acdf5bf4SSatish Balay if (nztot) { 1326acdf5bf4SSatish Balay /* Sort by increasing column numbers, assuming A and B already sorted */ 1327b24ad042SBarry Smith PetscInt imark = -1; 1328acdf5bf4SSatish Balay if (v) { 1329acdf5bf4SSatish Balay *v = v_p = mat->rowvalues; 1330acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 1331d9d09a02SSatish Balay if (cmap[cworkB[i] / bs] < cstart) v_p[i] = vworkB[i]; 1332acdf5bf4SSatish Balay else break; 1333acdf5bf4SSatish Balay } 1334acdf5bf4SSatish Balay imark = i; 1335acdf5bf4SSatish Balay for (i = 0; i < nzA; i++) v_p[imark + i] = vworkA[i]; 1336acdf5bf4SSatish Balay for (i = imark; i < nzB; i++) v_p[nzA + i] = vworkB[i]; 1337acdf5bf4SSatish Balay } 1338acdf5bf4SSatish Balay if (idx) { 1339acdf5bf4SSatish Balay *idx = idx_p = mat->rowindices; 1340acdf5bf4SSatish Balay if (imark > -1) { 13419371c9d4SSatish Balay for (i = 0; i < imark; i++) { idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; } 1342acdf5bf4SSatish Balay } else { 1343acdf5bf4SSatish Balay for (i = 0; i < nzB; i++) { 134426fbe8dcSKarl Rupp if (cmap[cworkB[i] / bs] < cstart) idx_p[i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1345acdf5bf4SSatish Balay else break; 1346acdf5bf4SSatish Balay } 1347acdf5bf4SSatish Balay imark = i; 1348acdf5bf4SSatish Balay } 1349d9d09a02SSatish Balay for (i = 0; i < nzA; i++) idx_p[imark + i] = cstart * bs + cworkA[i]; 1350d9d09a02SSatish Balay for (i = imark; i < nzB; i++) idx_p[nzA + i] = cmap[cworkB[i] / bs] * bs + cworkB[i] % bs; 1351acdf5bf4SSatish Balay } 1352d64ed03dSBarry Smith } else { 1353f4259b30SLisandro Dalcin if (idx) *idx = NULL; 1354f4259b30SLisandro Dalcin if (v) *v = NULL; 1355d212a18eSSatish Balay } 1356acdf5bf4SSatish Balay } 1357acdf5bf4SSatish Balay *nz = nztot; 13589566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->restorerow)(mat->A, lrow, &nzA, pcA, pvA)); 13599566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->restorerow)(mat->B, lrow, &nzB, pcB, pvB)); 13603a40ed3dSBarry Smith PetscFunctionReturn(0); 1361acdf5bf4SSatish Balay } 1362acdf5bf4SSatish Balay 13639371c9d4SSatish Balay PetscErrorCode MatRestoreRow_MPIBAIJ(Mat mat, PetscInt row, PetscInt *nz, PetscInt **idx, PetscScalar **v) { 1364acdf5bf4SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 1365d64ed03dSBarry Smith 1366d64ed03dSBarry Smith PetscFunctionBegin; 13675f80ce2aSJacob Faibussowitsch PetscCheck(baij->getrowactive, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "MatGetRow not called"); 1368acdf5bf4SSatish Balay baij->getrowactive = PETSC_FALSE; 13693a40ed3dSBarry Smith PetscFunctionReturn(0); 1370acdf5bf4SSatish Balay } 1371acdf5bf4SSatish Balay 13729371c9d4SSatish Balay PetscErrorCode MatZeroEntries_MPIBAIJ(Mat A) { 137358667388SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1374d64ed03dSBarry Smith 1375d64ed03dSBarry Smith PetscFunctionBegin; 13769566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->A)); 13779566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(l->B)); 13783a40ed3dSBarry Smith PetscFunctionReturn(0); 137958667388SSatish Balay } 13800ac07820SSatish Balay 13819371c9d4SSatish Balay PetscErrorCode MatGetInfo_MPIBAIJ(Mat matin, MatInfoType flag, MatInfo *info) { 13824e220ebcSLois Curfman McInnes Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)matin->data; 13834e220ebcSLois Curfman McInnes Mat A = a->A, B = a->B; 13843966268fSBarry Smith PetscLogDouble isend[5], irecv[5]; 13850ac07820SSatish Balay 1386d64ed03dSBarry Smith PetscFunctionBegin; 1387d0f46423SBarry Smith info->block_size = (PetscReal)matin->rmap->bs; 138826fbe8dcSKarl Rupp 13899566063dSJacob Faibussowitsch PetscCall(MatGetInfo(A, MAT_LOCAL, info)); 139026fbe8dcSKarl Rupp 13919371c9d4SSatish Balay isend[0] = info->nz_used; 13929371c9d4SSatish Balay isend[1] = info->nz_allocated; 13939371c9d4SSatish Balay isend[2] = info->nz_unneeded; 13949371c9d4SSatish Balay isend[3] = info->memory; 13959371c9d4SSatish Balay isend[4] = info->mallocs; 139626fbe8dcSKarl Rupp 13979566063dSJacob Faibussowitsch PetscCall(MatGetInfo(B, MAT_LOCAL, info)); 139826fbe8dcSKarl Rupp 13999371c9d4SSatish Balay isend[0] += info->nz_used; 14009371c9d4SSatish Balay isend[1] += info->nz_allocated; 14019371c9d4SSatish Balay isend[2] += info->nz_unneeded; 14029371c9d4SSatish Balay isend[3] += info->memory; 14039371c9d4SSatish Balay isend[4] += info->mallocs; 140426fbe8dcSKarl Rupp 14050ac07820SSatish Balay if (flag == MAT_LOCAL) { 14064e220ebcSLois Curfman McInnes info->nz_used = isend[0]; 14074e220ebcSLois Curfman McInnes info->nz_allocated = isend[1]; 14084e220ebcSLois Curfman McInnes info->nz_unneeded = isend[2]; 14094e220ebcSLois Curfman McInnes info->memory = isend[3]; 14104e220ebcSLois Curfman McInnes info->mallocs = isend[4]; 14110ac07820SSatish Balay } else if (flag == MAT_GLOBAL_MAX) { 14121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_MAX, PetscObjectComm((PetscObject)matin))); 141326fbe8dcSKarl Rupp 14144e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14154e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14164e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14174e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14184e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 14190ac07820SSatish Balay } else if (flag == MAT_GLOBAL_SUM) { 14201c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(isend, irecv, 5, MPIU_PETSCLOGDOUBLE, MPI_SUM, PetscObjectComm((PetscObject)matin))); 142126fbe8dcSKarl Rupp 14224e220ebcSLois Curfman McInnes info->nz_used = irecv[0]; 14234e220ebcSLois Curfman McInnes info->nz_allocated = irecv[1]; 14244e220ebcSLois Curfman McInnes info->nz_unneeded = irecv[2]; 14254e220ebcSLois Curfman McInnes info->memory = irecv[3]; 14264e220ebcSLois Curfman McInnes info->mallocs = irecv[4]; 142798921bdaSJacob Faibussowitsch } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_ARG_WRONG, "Unknown MatInfoType argument %d", (int)flag); 14284e220ebcSLois Curfman McInnes info->fill_ratio_given = 0; /* no parallel LU/ILU/Cholesky */ 14294e220ebcSLois Curfman McInnes info->fill_ratio_needed = 0; 14304e220ebcSLois Curfman McInnes info->factor_mallocs = 0; 14313a40ed3dSBarry Smith PetscFunctionReturn(0); 14320ac07820SSatish Balay } 14330ac07820SSatish Balay 14349371c9d4SSatish Balay PetscErrorCode MatSetOption_MPIBAIJ(Mat A, MatOption op, PetscBool flg) { 143558667388SSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 143658667388SSatish Balay 1437d64ed03dSBarry Smith PetscFunctionBegin; 143812c028f9SKris Buschelman switch (op) { 1439512a5fc5SBarry Smith case MAT_NEW_NONZERO_LOCATIONS: 144012c028f9SKris Buschelman case MAT_NEW_NONZERO_ALLOCATION_ERR: 144128b2fa4aSMatthew Knepley case MAT_UNUSED_NONZERO_LOCATION_ERR: 1442a9817697SBarry Smith case MAT_KEEP_NONZERO_PATTERN: 144312c028f9SKris Buschelman case MAT_NEW_NONZERO_LOCATION_ERR: 144443674050SBarry Smith MatCheckPreallocated(A, 1); 14459566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14469566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 144712c028f9SKris Buschelman break; 144812c028f9SKris Buschelman case MAT_ROW_ORIENTED: 144943674050SBarry Smith MatCheckPreallocated(A, 1); 14504e0d8c25SBarry Smith a->roworiented = flg; 145126fbe8dcSKarl Rupp 14529566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->A, op, flg)); 14539566063dSJacob Faibussowitsch PetscCall(MatSetOption(a->B, op, flg)); 145412c028f9SKris Buschelman break; 14558c78258cSHong Zhang case MAT_FORCE_DIAGONAL_ENTRIES: 14569371c9d4SSatish Balay case MAT_SORTED_FULL: PetscCall(PetscInfo(A, "Option %s ignored\n", MatOptions[op])); break; 14579371c9d4SSatish Balay case MAT_IGNORE_OFF_PROC_ENTRIES: a->donotstash = flg; break; 145812c028f9SKris Buschelman case MAT_USE_HASH_TABLE: 14594e0d8c25SBarry Smith a->ht_flag = flg; 1460abf3b562SBarry Smith a->ht_fact = 1.39; 146112c028f9SKris Buschelman break; 146277e54ba9SKris Buschelman case MAT_SYMMETRIC: 146377e54ba9SKris Buschelman case MAT_STRUCTURALLY_SYMMETRIC: 14642188ac68SBarry Smith case MAT_HERMITIAN: 1465c10200c1SHong Zhang case MAT_SUBMAT_SINGLEIS: 14662188ac68SBarry Smith case MAT_SYMMETRY_ETERNAL: 1467b94d7dedSBarry Smith case MAT_STRUCTURAL_SYMMETRY_ETERNAL: 1468b94d7dedSBarry Smith case MAT_SPD_ETERNAL: 1469b94d7dedSBarry Smith /* if the diagonal matrix is square it inherits some of the properties above */ 147077e54ba9SKris Buschelman break; 14719371c9d4SSatish Balay default: SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "unknown option %d", op); 1472d64ed03dSBarry Smith } 14733a40ed3dSBarry Smith PetscFunctionReturn(0); 147458667388SSatish Balay } 147558667388SSatish Balay 14769371c9d4SSatish Balay PetscErrorCode MatTranspose_MPIBAIJ(Mat A, MatReuse reuse, Mat *matout) { 14770ac07820SSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)A->data; 14780ac07820SSatish Balay Mat_SeqBAIJ *Aloc; 14790ac07820SSatish Balay Mat B; 1480d0f46423SBarry Smith PetscInt M = A->rmap->N, N = A->cmap->N, *ai, *aj, i, *rvals, j, k, col; 1481d0f46423SBarry Smith PetscInt bs = A->rmap->bs, mbs = baij->mbs; 14823eda8832SBarry Smith MatScalar *a; 14830ac07820SSatish Balay 1484d64ed03dSBarry Smith PetscFunctionBegin; 14857fb60732SBarry Smith if (reuse == MAT_REUSE_MATRIX) PetscCall(MatTransposeCheckNonzeroState_Private(A, *matout)); 1486cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_INPLACE_MATRIX) { 14879566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 14889566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->cmap->n, A->rmap->n, N, M)); 14899566063dSJacob Faibussowitsch PetscCall(MatSetType(B, ((PetscObject)A)->type_name)); 14902e72b8d9SBarry Smith /* Do not know preallocation information, but must set block size */ 14919566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, A->rmap->bs, PETSC_DECIDE, NULL, PETSC_DECIDE, NULL)); 1492fc4dec0aSBarry Smith } else { 1493fc4dec0aSBarry Smith B = *matout; 1494fc4dec0aSBarry Smith } 14950ac07820SSatish Balay 14960ac07820SSatish Balay /* copy over the A part */ 14970ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->A->data; 14989371c9d4SSatish Balay ai = Aloc->i; 14999371c9d4SSatish Balay aj = Aloc->j; 15009371c9d4SSatish Balay a = Aloc->a; 15019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs, &rvals)); 15020ac07820SSatish Balay 15030ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1504899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 150526fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15060ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 1507899cda47SBarry Smith col = (baij->cstartbs + aj[j]) * bs; 15080ac07820SSatish Balay for (k = 0; k < bs; k++) { 15099566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 151026fbe8dcSKarl Rupp 15119371c9d4SSatish Balay col++; 15129371c9d4SSatish Balay a += bs; 15130ac07820SSatish Balay } 15140ac07820SSatish Balay } 15150ac07820SSatish Balay } 15160ac07820SSatish Balay /* copy over the B part */ 15170ac07820SSatish Balay Aloc = (Mat_SeqBAIJ *)baij->B->data; 15189371c9d4SSatish Balay ai = Aloc->i; 15199371c9d4SSatish Balay aj = Aloc->j; 15209371c9d4SSatish Balay a = Aloc->a; 15210ac07820SSatish Balay for (i = 0; i < mbs; i++) { 1522899cda47SBarry Smith rvals[0] = bs * (baij->rstartbs + i); 152326fbe8dcSKarl Rupp for (j = 1; j < bs; j++) rvals[j] = rvals[j - 1] + 1; 15240ac07820SSatish Balay for (j = ai[i]; j < ai[i + 1]; j++) { 15250ac07820SSatish Balay col = baij->garray[aj[j]] * bs; 15260ac07820SSatish Balay for (k = 0; k < bs; k++) { 15279566063dSJacob Faibussowitsch PetscCall(MatSetValues_MPIBAIJ(B, 1, &col, bs, rvals, a, INSERT_VALUES)); 152826fbe8dcSKarl Rupp col++; 152926fbe8dcSKarl Rupp a += bs; 15300ac07820SSatish Balay } 15310ac07820SSatish Balay } 15320ac07820SSatish Balay } 15339566063dSJacob Faibussowitsch PetscCall(PetscFree(rvals)); 15349566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 15359566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 15360ac07820SSatish Balay 1537cf37664fSBarry Smith if (reuse == MAT_INITIAL_MATRIX || reuse == MAT_REUSE_MATRIX) *matout = B; 1538*48a46eb9SPierre Jolivet else PetscCall(MatHeaderMerge(A, &B)); 15393a40ed3dSBarry Smith PetscFunctionReturn(0); 15400ac07820SSatish Balay } 15410e95ebc0SSatish Balay 15429371c9d4SSatish Balay PetscErrorCode MatDiagonalScale_MPIBAIJ(Mat mat, Vec ll, Vec rr) { 154336c4a09eSSatish Balay Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 154436c4a09eSSatish Balay Mat a = baij->A, b = baij->B; 1545b24ad042SBarry Smith PetscInt s1, s2, s3; 15460e95ebc0SSatish Balay 1547d64ed03dSBarry Smith PetscFunctionBegin; 15489566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &s2, &s3)); 154936c4a09eSSatish Balay if (rr) { 15509566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(rr, &s1)); 15515f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s3, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "right vector non-conforming local size"); 155236c4a09eSSatish Balay /* Overlap communication with computation. */ 15539566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 155436c4a09eSSatish Balay } 15550e95ebc0SSatish Balay if (ll) { 15569566063dSJacob Faibussowitsch PetscCall(VecGetLocalSize(ll, &s1)); 15575f80ce2aSJacob Faibussowitsch PetscCheck(s1 == s2, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "left vector non-conforming local size"); 1558dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, ll, NULL); 15590e95ebc0SSatish Balay } 156036c4a09eSSatish Balay /* scale the diagonal block */ 1561dbbe0bcdSBarry Smith PetscUseTypeMethod(a, diagonalscale, ll, rr); 156236c4a09eSSatish Balay 156336c4a09eSSatish Balay if (rr) { 156436c4a09eSSatish Balay /* Do a scatter end and then right scale the off-diagonal block */ 15659566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(baij->Mvctx, rr, baij->lvec, INSERT_VALUES, SCATTER_FORWARD)); 1566dbbe0bcdSBarry Smith PetscUseTypeMethod(b, diagonalscale, NULL, baij->lvec); 156736c4a09eSSatish Balay } 15683a40ed3dSBarry Smith PetscFunctionReturn(0); 15690e95ebc0SSatish Balay } 15700e95ebc0SSatish Balay 15719371c9d4SSatish Balay PetscErrorCode MatZeroRows_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) { 15720ac07820SSatish Balay Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 157365a92638SMatthew G. Knepley PetscInt *lrows; 15746e520ac8SStefano Zampini PetscInt r, len; 157594342113SStefano Zampini PetscBool cong; 15760ac07820SSatish Balay 1577d64ed03dSBarry Smith PetscFunctionBegin; 15786e520ac8SStefano Zampini /* get locally owned rows */ 15799566063dSJacob Faibussowitsch PetscCall(MatZeroRowsMapLocal_Private(A, N, rows, &len, &lrows)); 158097b48c8fSBarry Smith /* fix right hand side if needed */ 158197b48c8fSBarry Smith if (x && b) { 158265a92638SMatthew G. Knepley const PetscScalar *xx; 158365a92638SMatthew G. Knepley PetscScalar *bb; 158465a92638SMatthew G. Knepley 15859566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(x, &xx)); 15869566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 158765a92638SMatthew G. Knepley for (r = 0; r < len; ++r) bb[lrows[r]] = diag * xx[lrows[r]]; 15889566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(x, &xx)); 15899566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 159097b48c8fSBarry Smith } 159197b48c8fSBarry Smith 15920ac07820SSatish Balay /* actually zap the local rows */ 159372dacd9aSBarry Smith /* 159472dacd9aSBarry Smith Zero the required rows. If the "diagonal block" of the matrix 1595a8c7a070SBarry Smith is square and the user wishes to set the diagonal we use separate 159672dacd9aSBarry Smith code so that MatSetValues() is not called for each diagonal allocating 159772dacd9aSBarry Smith new memory, thus calling lots of mallocs and slowing things down. 159872dacd9aSBarry Smith 159972dacd9aSBarry Smith */ 16009c957beeSSatish Balay /* must zero l->B before l->A because the (diag) case below may put values into l->B*/ 16019566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->B, len, lrows, 0.0, NULL, NULL)); 16029566063dSJacob Faibussowitsch PetscCall(MatHasCongruentLayouts(A, &cong)); 160394342113SStefano Zampini if ((diag != 0.0) && cong) { 16049566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, diag, NULL, NULL)); 1605f4df32b1SMatthew Knepley } else if (diag != 0.0) { 16069566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 16075f80ce2aSJacob Faibussowitsch PetscCheck(!((Mat_SeqBAIJ *)l->A->data)->nonew, PETSC_COMM_SELF, PETSC_ERR_SUP, "MatZeroRows() on rectangular matrices cannot be used with the Mat options \n\ 1608512a5fc5SBarry Smith MAT_NEW_NONZERO_LOCATIONS,MAT_NEW_NONZERO_LOCATION_ERR,MAT_NEW_NONZERO_ALLOCATION_ERR"); 160965a92638SMatthew G. Knepley for (r = 0; r < len; ++r) { 161065a92638SMatthew G. Knepley const PetscInt row = lrows[r] + A->rmap->rstart; 16119566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 1, &row, 1, &row, &diag, INSERT_VALUES)); 1612a07cd24cSSatish Balay } 16139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 16149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 16159c957beeSSatish Balay } else { 16169566063dSJacob Faibussowitsch PetscCall(MatZeroRows_SeqBAIJ(l->A, len, lrows, 0.0, NULL, NULL)); 1617a07cd24cSSatish Balay } 16189566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 16194f9cfa9eSBarry Smith 16204f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 16214f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 1622e56f5c9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 16231c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 1624e56f5c9eSBarry Smith } 16253a40ed3dSBarry Smith PetscFunctionReturn(0); 16260ac07820SSatish Balay } 162772dacd9aSBarry Smith 16289371c9d4SSatish Balay PetscErrorCode MatZeroRowsColumns_MPIBAIJ(Mat A, PetscInt N, const PetscInt rows[], PetscScalar diag, Vec x, Vec b) { 16296f0a72daSMatthew G. Knepley Mat_MPIBAIJ *l = (Mat_MPIBAIJ *)A->data; 1630131c27b5Sprj- PetscMPIInt n = A->rmap->n, p = 0; 1631131c27b5Sprj- PetscInt i, j, k, r, len = 0, row, col, count; 16326f0a72daSMatthew G. Knepley PetscInt *lrows, *owners = A->rmap->range; 16336f0a72daSMatthew G. Knepley PetscSFNode *rrows; 16346f0a72daSMatthew G. Knepley PetscSF sf; 16356f0a72daSMatthew G. Knepley const PetscScalar *xx; 16366f0a72daSMatthew G. Knepley PetscScalar *bb, *mask; 16376f0a72daSMatthew G. Knepley Vec xmask, lmask; 16386f0a72daSMatthew G. Knepley Mat_SeqBAIJ *baij = (Mat_SeqBAIJ *)l->B->data; 16396f0a72daSMatthew G. Knepley PetscInt bs = A->rmap->bs, bs2 = baij->bs2; 16406f0a72daSMatthew G. Knepley PetscScalar *aa; 16416f0a72daSMatthew G. Knepley 16426f0a72daSMatthew G. Knepley PetscFunctionBegin; 16436f0a72daSMatthew G. Knepley /* Create SF where leaves are input rows and roots are owned rows */ 16449566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(n, &lrows)); 16456f0a72daSMatthew G. Knepley for (r = 0; r < n; ++r) lrows[r] = -1; 16469566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(N, &rrows)); 16476f0a72daSMatthew G. Knepley for (r = 0; r < N; ++r) { 16486f0a72daSMatthew G. Knepley const PetscInt idx = rows[r]; 16495f80ce2aSJacob Faibussowitsch PetscCheck(idx >= 0 && A->rmap->N > idx, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row %" PetscInt_FMT " out of range [0,%" PetscInt_FMT ")", idx, A->rmap->N); 16505ba17502SJed Brown if (idx < owners[p] || owners[p + 1] <= idx) { /* short-circuit the search if the last p owns this row too */ 16519566063dSJacob Faibussowitsch PetscCall(PetscLayoutFindOwner(A->rmap, idx, &p)); 16525ba17502SJed Brown } 16536f0a72daSMatthew G. Knepley rrows[r].rank = p; 16546f0a72daSMatthew G. Knepley rrows[r].index = rows[r] - owners[p]; 16556f0a72daSMatthew G. Knepley } 16569566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)A), &sf)); 16579566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf, n, N, NULL, PETSC_OWN_POINTER, rrows, PETSC_OWN_POINTER)); 16586f0a72daSMatthew G. Knepley /* Collect flags for rows to be zeroed */ 16599566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16609566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, (PetscInt *)rows, lrows, MPI_LOR)); 16619566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf)); 16626f0a72daSMatthew G. Knepley /* Compress and put in row numbers */ 16639371c9d4SSatish Balay for (r = 0; r < n; ++r) 16649371c9d4SSatish Balay if (lrows[r] >= 0) lrows[len++] = r; 16656f0a72daSMatthew G. Knepley /* zero diagonal part of matrix */ 16669566063dSJacob Faibussowitsch PetscCall(MatZeroRowsColumns(l->A, len, lrows, diag, x, b)); 16676f0a72daSMatthew G. Knepley /* handle off diagonal part of matrix */ 16689566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(A, &xmask, NULL)); 16699566063dSJacob Faibussowitsch PetscCall(VecDuplicate(l->lvec, &lmask)); 16709566063dSJacob Faibussowitsch PetscCall(VecGetArray(xmask, &bb)); 16716f0a72daSMatthew G. Knepley for (i = 0; i < len; i++) bb[lrows[i]] = 1; 16729566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(xmask, &bb)); 16739566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 16749566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, xmask, lmask, ADD_VALUES, SCATTER_FORWARD)); 16759566063dSJacob Faibussowitsch PetscCall(VecDestroy(&xmask)); 16766f0a72daSMatthew G. Knepley if (x) { 16779566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16789566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(l->Mvctx, x, l->lvec, INSERT_VALUES, SCATTER_FORWARD)); 16799566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(l->lvec, &xx)); 16809566063dSJacob Faibussowitsch PetscCall(VecGetArray(b, &bb)); 16816f0a72daSMatthew G. Knepley } 16829566063dSJacob Faibussowitsch PetscCall(VecGetArray(lmask, &mask)); 16836f0a72daSMatthew G. Knepley /* remove zeroed rows of off diagonal matrix */ 16846f0a72daSMatthew G. Knepley for (i = 0; i < len; ++i) { 16856f0a72daSMatthew G. Knepley row = lrows[i]; 16866f0a72daSMatthew G. Knepley count = (baij->i[row / bs + 1] - baij->i[row / bs]) * bs; 16876f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + baij->i[row / bs] * bs2 + (row % bs); 16886f0a72daSMatthew G. Knepley for (k = 0; k < count; ++k) { 16896f0a72daSMatthew G. Knepley aa[0] = 0.0; 16906f0a72daSMatthew G. Knepley aa += bs; 16916f0a72daSMatthew G. Knepley } 16926f0a72daSMatthew G. Knepley } 16936f0a72daSMatthew G. Knepley /* loop over all elements of off process part of matrix zeroing removed columns*/ 16946f0a72daSMatthew G. Knepley for (i = 0; i < l->B->rmap->N; ++i) { 16956f0a72daSMatthew G. Knepley row = i / bs; 16966f0a72daSMatthew G. Knepley for (j = baij->i[row]; j < baij->i[row + 1]; ++j) { 16976f0a72daSMatthew G. Knepley for (k = 0; k < bs; ++k) { 16986f0a72daSMatthew G. Knepley col = bs * baij->j[j] + k; 16996f0a72daSMatthew G. Knepley if (PetscAbsScalar(mask[col])) { 17006f0a72daSMatthew G. Knepley aa = ((MatScalar *)(baij->a)) + j * bs2 + (i % bs) + bs * k; 170189ae1891SBarry Smith if (x) bb[i] -= aa[0] * xx[col]; 17026f0a72daSMatthew G. Knepley aa[0] = 0.0; 17036f0a72daSMatthew G. Knepley } 17046f0a72daSMatthew G. Knepley } 17056f0a72daSMatthew G. Knepley } 17066f0a72daSMatthew G. Knepley } 17076f0a72daSMatthew G. Knepley if (x) { 17089566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(b, &bb)); 17099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(l->lvec, &xx)); 17106f0a72daSMatthew G. Knepley } 17119566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(lmask, &mask)); 17129566063dSJacob Faibussowitsch PetscCall(VecDestroy(&lmask)); 17139566063dSJacob Faibussowitsch PetscCall(PetscFree(lrows)); 17144f9cfa9eSBarry Smith 17154f9cfa9eSBarry Smith /* only change matrix nonzero state if pattern was allowed to be changed */ 17164f9cfa9eSBarry Smith if (!((Mat_SeqBAIJ *)(l->A->data))->keepnonzeropattern) { 17174f9cfa9eSBarry Smith PetscObjectState state = l->A->nonzerostate + l->B->nonzerostate; 17181c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&state, &A->nonzerostate, 1, MPIU_INT64, MPI_SUM, PetscObjectComm((PetscObject)A))); 17194f9cfa9eSBarry Smith } 17206f0a72daSMatthew G. Knepley PetscFunctionReturn(0); 17216f0a72daSMatthew G. Knepley } 17226f0a72daSMatthew G. Knepley 17239371c9d4SSatish Balay PetscErrorCode MatSetUnfactored_MPIBAIJ(Mat A) { 1724bb5a7306SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 1725d64ed03dSBarry Smith 1726d64ed03dSBarry Smith PetscFunctionBegin; 17279566063dSJacob Faibussowitsch PetscCall(MatSetUnfactored(a->A)); 17283a40ed3dSBarry Smith PetscFunctionReturn(0); 1729bb5a7306SBarry Smith } 1730bb5a7306SBarry Smith 17316849ba73SBarry Smith static PetscErrorCode MatDuplicate_MPIBAIJ(Mat, MatDuplicateOption, Mat *); 17320ac07820SSatish Balay 17339371c9d4SSatish Balay PetscErrorCode MatEqual_MPIBAIJ(Mat A, Mat B, PetscBool *flag) { 17347fc3c18eSBarry Smith Mat_MPIBAIJ *matB = (Mat_MPIBAIJ *)B->data, *matA = (Mat_MPIBAIJ *)A->data; 17357fc3c18eSBarry Smith Mat a, b, c, d; 1736ace3abfcSBarry Smith PetscBool flg; 17377fc3c18eSBarry Smith 17387fc3c18eSBarry Smith PetscFunctionBegin; 17399371c9d4SSatish Balay a = matA->A; 17409371c9d4SSatish Balay b = matA->B; 17419371c9d4SSatish Balay c = matB->A; 17429371c9d4SSatish Balay d = matB->B; 17437fc3c18eSBarry Smith 17449566063dSJacob Faibussowitsch PetscCall(MatEqual(a, c, &flg)); 1745*48a46eb9SPierre Jolivet if (flg) PetscCall(MatEqual(b, d, &flg)); 17461c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&flg, flag, 1, MPIU_BOOL, MPI_LAND, PetscObjectComm((PetscObject)A))); 17477fc3c18eSBarry Smith PetscFunctionReturn(0); 17487fc3c18eSBarry Smith } 17497fc3c18eSBarry Smith 17509371c9d4SSatish Balay PetscErrorCode MatCopy_MPIBAIJ(Mat A, Mat B, MatStructure str) { 17513c896bc6SHong Zhang Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 17523c896bc6SHong Zhang Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 17533c896bc6SHong Zhang 17543c896bc6SHong Zhang PetscFunctionBegin; 17553c896bc6SHong Zhang /* If the two matrices don't have the same copy implementation, they aren't compatible for fast copy. */ 17563c896bc6SHong Zhang if ((str != SAME_NONZERO_PATTERN) || (A->ops->copy != B->ops->copy)) { 17579566063dSJacob Faibussowitsch PetscCall(MatCopy_Basic(A, B, str)); 17583c896bc6SHong Zhang } else { 17599566063dSJacob Faibussowitsch PetscCall(MatCopy(a->A, b->A, str)); 17609566063dSJacob Faibussowitsch PetscCall(MatCopy(a->B, b->B, str)); 17613c896bc6SHong Zhang } 17629566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)B)); 17633c896bc6SHong Zhang PetscFunctionReturn(0); 17643c896bc6SHong Zhang } 1765273d9f13SBarry Smith 17669371c9d4SSatish Balay PetscErrorCode MatSetUp_MPIBAIJ(Mat A) { 1767273d9f13SBarry Smith PetscFunctionBegin; 17689566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(A, A->rmap->bs, PETSC_DEFAULT, NULL, PETSC_DEFAULT, NULL)); 1769273d9f13SBarry Smith PetscFunctionReturn(0); 1770273d9f13SBarry Smith } 1771273d9f13SBarry Smith 17729371c9d4SSatish Balay PetscErrorCode MatAXPYGetPreallocation_MPIBAIJ(Mat Y, const PetscInt *yltog, Mat X, const PetscInt *xltog, PetscInt *nnz) { 1773001ddc4fSHong Zhang PetscInt bs = Y->rmap->bs, m = Y->rmap->N / bs; 17744de5dceeSHong Zhang Mat_SeqBAIJ *x = (Mat_SeqBAIJ *)X->data; 17754de5dceeSHong Zhang Mat_SeqBAIJ *y = (Mat_SeqBAIJ *)Y->data; 17764de5dceeSHong Zhang 17774de5dceeSHong Zhang PetscFunctionBegin; 17789566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIX_private(m, x->i, x->j, xltog, y->i, y->j, yltog, nnz)); 17794de5dceeSHong Zhang PetscFunctionReturn(0); 17804de5dceeSHong Zhang } 17814de5dceeSHong Zhang 17829371c9d4SSatish Balay PetscErrorCode MatAXPY_MPIBAIJ(Mat Y, PetscScalar a, Mat X, MatStructure str) { 17834fe895cdSHong Zhang Mat_MPIBAIJ *xx = (Mat_MPIBAIJ *)X->data, *yy = (Mat_MPIBAIJ *)Y->data; 17844fe895cdSHong Zhang PetscBLASInt bnz, one = 1; 17854fe895cdSHong Zhang Mat_SeqBAIJ *x, *y; 1786b31f67cfSBarry Smith PetscInt bs2 = Y->rmap->bs * Y->rmap->bs; 17874fe895cdSHong Zhang 17884fe895cdSHong Zhang PetscFunctionBegin; 17894fe895cdSHong Zhang if (str == SAME_NONZERO_PATTERN) { 17904fe895cdSHong Zhang PetscScalar alpha = a; 17914fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->A->data; 17924fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->A->data; 17939566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1794792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 17954fe895cdSHong Zhang x = (Mat_SeqBAIJ *)xx->B->data; 17964fe895cdSHong Zhang y = (Mat_SeqBAIJ *)yy->B->data; 17979566063dSJacob Faibussowitsch PetscCall(PetscBLASIntCast(x->nz * bs2, &bnz)); 1798792fecdfSBarry Smith PetscCallBLAS("BLASaxpy", BLASaxpy_(&bnz, &alpha, x->a, &one, y->a, &one)); 17999566063dSJacob Faibussowitsch PetscCall(PetscObjectStateIncrease((PetscObject)Y)); 1800ab784542SHong Zhang } else if (str == SUBSET_NONZERO_PATTERN) { /* nonzeros of X is a subset of Y's */ 18019566063dSJacob Faibussowitsch PetscCall(MatAXPY_Basic(Y, a, X, str)); 18024fe895cdSHong Zhang } else { 18034de5dceeSHong Zhang Mat B; 18044de5dceeSHong Zhang PetscInt *nnz_d, *nnz_o, bs = Y->rmap->bs; 18059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->A->rmap->N, &nnz_d)); 18069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(yy->B->rmap->N, &nnz_o)); 18079566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)Y), &B)); 18089566063dSJacob Faibussowitsch PetscCall(PetscObjectSetName((PetscObject)B, ((PetscObject)Y)->name)); 18099566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, Y->rmap->n, Y->cmap->n, Y->rmap->N, Y->cmap->N)); 18109566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizesFromMats(B, Y, Y)); 18119566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIBAIJ)); 18129566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_SeqBAIJ(yy->A, xx->A, nnz_d)); 18139566063dSJacob Faibussowitsch PetscCall(MatAXPYGetPreallocation_MPIBAIJ(yy->B, yy->garray, xx->B, xx->garray, nnz_o)); 18149566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, nnz_d, 0, nnz_o)); 18154de5dceeSHong Zhang /* MatAXPY_BasicWithPreallocation() for BAIJ matrix is much slower than AIJ, even for bs=1 ! */ 18169566063dSJacob Faibussowitsch PetscCall(MatAXPY_BasicWithPreallocation(B, Y, a, X, str)); 18179566063dSJacob Faibussowitsch PetscCall(MatHeaderMerge(Y, &B)); 18189566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_d)); 18199566063dSJacob Faibussowitsch PetscCall(PetscFree(nnz_o)); 18204fe895cdSHong Zhang } 18214fe895cdSHong Zhang PetscFunctionReturn(0); 18224fe895cdSHong Zhang } 18234fe895cdSHong Zhang 18249371c9d4SSatish Balay PetscErrorCode MatConjugate_MPIBAIJ(Mat mat) { 18255f80ce2aSJacob Faibussowitsch PetscFunctionBegin; 18265f80ce2aSJacob Faibussowitsch if (PetscDefined(USE_COMPLEX)) { 18272726fb6dSPierre Jolivet Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)mat->data; 18282726fb6dSPierre Jolivet 18299566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->A)); 18309566063dSJacob Faibussowitsch PetscCall(MatConjugate_SeqBAIJ(a->B)); 18315f80ce2aSJacob Faibussowitsch } 18322726fb6dSPierre Jolivet PetscFunctionReturn(0); 18332726fb6dSPierre Jolivet } 18342726fb6dSPierre Jolivet 18359371c9d4SSatish Balay PetscErrorCode MatRealPart_MPIBAIJ(Mat A) { 183699cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 183799cafbc1SBarry Smith 183899cafbc1SBarry Smith PetscFunctionBegin; 18399566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->A)); 18409566063dSJacob Faibussowitsch PetscCall(MatRealPart(a->B)); 184199cafbc1SBarry Smith PetscFunctionReturn(0); 184299cafbc1SBarry Smith } 184399cafbc1SBarry Smith 18449371c9d4SSatish Balay PetscErrorCode MatImaginaryPart_MPIBAIJ(Mat A) { 184599cafbc1SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 184699cafbc1SBarry Smith 184799cafbc1SBarry Smith PetscFunctionBegin; 18489566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->A)); 18499566063dSJacob Faibussowitsch PetscCall(MatImaginaryPart(a->B)); 185099cafbc1SBarry Smith PetscFunctionReturn(0); 185199cafbc1SBarry Smith } 185299cafbc1SBarry Smith 18539371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPIBAIJ(Mat mat, IS isrow, IS iscol, MatReuse call, Mat *newmat) { 18544aa3045dSJed Brown IS iscol_local; 18554aa3045dSJed Brown PetscInt csize; 18564aa3045dSJed Brown 18574aa3045dSJed Brown PetscFunctionBegin; 18589566063dSJacob Faibussowitsch PetscCall(ISGetLocalSize(iscol, &csize)); 1859b79d0421SJed Brown if (call == MAT_REUSE_MATRIX) { 18609566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "ISAllGather", (PetscObject *)&iscol_local)); 18615f80ce2aSJacob Faibussowitsch PetscCheck(iscol_local, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 1862b79d0421SJed Brown } else { 18639566063dSJacob Faibussowitsch PetscCall(ISAllGather(iscol, &iscol_local)); 1864b79d0421SJed Brown } 18659566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(mat, isrow, iscol_local, csize, call, newmat)); 1866b79d0421SJed Brown if (call == MAT_INITIAL_MATRIX) { 18679566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)*newmat, "ISAllGather", (PetscObject)iscol_local)); 18689566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_local)); 1869b79d0421SJed Brown } 18704aa3045dSJed Brown PetscFunctionReturn(0); 18714aa3045dSJed Brown } 187217df9f7cSHong Zhang 187382094794SBarry Smith /* 187482094794SBarry Smith Not great since it makes two copies of the submatrix, first an SeqBAIJ 187582094794SBarry Smith in local and then by concatenating the local matrices the end result. 18767dae84e0SHong Zhang Writing it directly would be much like MatCreateSubMatrices_MPIBAIJ(). 18778f46ffcaSHong Zhang This routine is used for BAIJ and SBAIJ matrices (unfortunate dependency). 187882094794SBarry Smith */ 18799371c9d4SSatish Balay PetscErrorCode MatCreateSubMatrix_MPIBAIJ_Private(Mat mat, IS isrow, IS iscol, PetscInt csize, MatReuse call, Mat *newmat) { 188082094794SBarry Smith PetscMPIInt rank, size; 188182094794SBarry Smith PetscInt i, m, n, rstart, row, rend, nz, *cwork, j, bs; 1882c9ffca76SHong Zhang PetscInt *ii, *jj, nlocal, *dlens, *olens, dlen, olen, jend, mglobal; 188329dcf524SDmitry Karpeev Mat M, Mreuse; 188482094794SBarry Smith MatScalar *vwork, *aa; 1885ce94432eSBarry Smith MPI_Comm comm; 188629dcf524SDmitry Karpeev IS isrow_new, iscol_new; 188782094794SBarry Smith Mat_SeqBAIJ *aij; 188882094794SBarry Smith 188982094794SBarry Smith PetscFunctionBegin; 18909566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)mat, &comm)); 18919566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 18929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 189329dcf524SDmitry Karpeev /* The compression and expansion should be avoided. Doesn't point 189429dcf524SDmitry Karpeev out errors, might change the indices, hence buggey */ 18959566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->rmap->N, mat->rmap->n, mat->rmap->bs, 1, &isrow, &isrow_new)); 18969566063dSJacob Faibussowitsch PetscCall(ISCompressIndicesGeneral(mat->cmap->N, mat->cmap->n, mat->cmap->bs, 1, &iscol, &iscol_new)); 189782094794SBarry Smith 189882094794SBarry Smith if (call == MAT_REUSE_MATRIX) { 18999566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)*newmat, "SubMatrix", (PetscObject *)&Mreuse)); 19005f80ce2aSJacob Faibussowitsch PetscCheck(Mreuse, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Submatrix passed in was not used before, cannot reuse"); 19019566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_REUSE_MATRIX, &Mreuse)); 190282094794SBarry Smith } else { 19039566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrices_MPIBAIJ_local(mat, 1, &isrow_new, &iscol_new, MAT_INITIAL_MATRIX, &Mreuse)); 190482094794SBarry Smith } 19059566063dSJacob Faibussowitsch PetscCall(ISDestroy(&isrow_new)); 19069566063dSJacob Faibussowitsch PetscCall(ISDestroy(&iscol_new)); 190782094794SBarry Smith /* 190882094794SBarry Smith m - number of local rows 190982094794SBarry Smith n - number of columns (same on all processors) 191082094794SBarry Smith rstart - first row in new global matrix generated 191182094794SBarry Smith */ 19129566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 19139566063dSJacob Faibussowitsch PetscCall(MatGetSize(Mreuse, &m, &n)); 191482094794SBarry Smith m = m / bs; 191582094794SBarry Smith n = n / bs; 191682094794SBarry Smith 191782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 191882094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 191982094794SBarry Smith ii = aij->i; 192082094794SBarry Smith jj = aij->j; 192182094794SBarry Smith 192282094794SBarry Smith /* 192382094794SBarry Smith Determine the number of non-zeros in the diagonal and off-diagonal 192482094794SBarry Smith portions of the matrix in order to do correct preallocation 192582094794SBarry Smith */ 192682094794SBarry Smith 192782094794SBarry Smith /* first get start and end of "diagonal" columns */ 192882094794SBarry Smith if (csize == PETSC_DECIDE) { 19299566063dSJacob Faibussowitsch PetscCall(ISGetSize(isrow, &mglobal)); 193082094794SBarry Smith if (mglobal == n * bs) { /* square matrix */ 193182094794SBarry Smith nlocal = m; 193282094794SBarry Smith } else { 193382094794SBarry Smith nlocal = n / size + ((n % size) > rank); 193482094794SBarry Smith } 193582094794SBarry Smith } else { 193682094794SBarry Smith nlocal = csize / bs; 193782094794SBarry Smith } 19389566063dSJacob Faibussowitsch PetscCallMPI(MPI_Scan(&nlocal, &rend, 1, MPIU_INT, MPI_SUM, comm)); 193982094794SBarry Smith rstart = rend - nlocal; 1940aed4548fSBarry Smith PetscCheck(rank != size - 1 || rend == n, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Local column sizes %" PetscInt_FMT " do not add up to total number of columns %" PetscInt_FMT, rend, n); 194182094794SBarry Smith 194282094794SBarry Smith /* next, compute all the lengths */ 19439566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m + 1, &dlens, m + 1, &olens)); 194482094794SBarry Smith for (i = 0; i < m; i++) { 194582094794SBarry Smith jend = ii[i + 1] - ii[i]; 194682094794SBarry Smith olen = 0; 194782094794SBarry Smith dlen = 0; 194882094794SBarry Smith for (j = 0; j < jend; j++) { 194982094794SBarry Smith if (*jj < rstart || *jj >= rend) olen++; 195082094794SBarry Smith else dlen++; 195182094794SBarry Smith jj++; 195282094794SBarry Smith } 195382094794SBarry Smith olens[i] = olen; 195482094794SBarry Smith dlens[i] = dlen; 195582094794SBarry Smith } 19569566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, &M)); 19579566063dSJacob Faibussowitsch PetscCall(MatSetSizes(M, bs * m, bs * nlocal, PETSC_DECIDE, bs * n)); 19589566063dSJacob Faibussowitsch PetscCall(MatSetType(M, ((PetscObject)mat)->type_name)); 19599566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19609566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(M, bs, 0, dlens, 0, olens)); 19619566063dSJacob Faibussowitsch PetscCall(PetscFree2(dlens, olens)); 196282094794SBarry Smith } else { 196382094794SBarry Smith PetscInt ml, nl; 196482094794SBarry Smith 196582094794SBarry Smith M = *newmat; 19669566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(M, &ml, &nl)); 19675f80ce2aSJacob Faibussowitsch PetscCheck(ml == m, PETSC_COMM_SELF, PETSC_ERR_ARG_SIZ, "Previous matrix must be same size/layout as request"); 19689566063dSJacob Faibussowitsch PetscCall(MatZeroEntries(M)); 196982094794SBarry Smith /* 197082094794SBarry Smith The next two lines are needed so we may call MatSetValues_MPIAIJ() below directly, 197182094794SBarry Smith rather than the slower MatSetValues(). 197282094794SBarry Smith */ 197382094794SBarry Smith M->was_assembled = PETSC_TRUE; 197482094794SBarry Smith M->assembled = PETSC_FALSE; 197582094794SBarry Smith } 19769566063dSJacob Faibussowitsch PetscCall(MatSetOption(M, MAT_ROW_ORIENTED, PETSC_FALSE)); 19779566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(M, &rstart, &rend)); 197882094794SBarry Smith aij = (Mat_SeqBAIJ *)(Mreuse)->data; 197982094794SBarry Smith ii = aij->i; 198082094794SBarry Smith jj = aij->j; 198182094794SBarry Smith aa = aij->a; 198282094794SBarry Smith for (i = 0; i < m; i++) { 198382094794SBarry Smith row = rstart / bs + i; 198482094794SBarry Smith nz = ii[i + 1] - ii[i]; 19859371c9d4SSatish Balay cwork = jj; 19869371c9d4SSatish Balay jj += nz; 19879371c9d4SSatish Balay vwork = aa; 19889371c9d4SSatish Balay aa += nz * bs * bs; 19899566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(M, 1, &row, nz, cwork, vwork, INSERT_VALUES)); 199082094794SBarry Smith } 199182094794SBarry Smith 19929566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(M, MAT_FINAL_ASSEMBLY)); 19939566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(M, MAT_FINAL_ASSEMBLY)); 199482094794SBarry Smith *newmat = M; 199582094794SBarry Smith 199682094794SBarry Smith /* save submatrix used in processor for next request */ 199782094794SBarry Smith if (call == MAT_INITIAL_MATRIX) { 19989566063dSJacob Faibussowitsch PetscCall(PetscObjectCompose((PetscObject)M, "SubMatrix", (PetscObject)Mreuse)); 19999566063dSJacob Faibussowitsch PetscCall(PetscObjectDereference((PetscObject)Mreuse)); 200082094794SBarry Smith } 200182094794SBarry Smith PetscFunctionReturn(0); 200282094794SBarry Smith } 200382094794SBarry Smith 20049371c9d4SSatish Balay PetscErrorCode MatPermute_MPIBAIJ(Mat A, IS rowp, IS colp, Mat *B) { 200582094794SBarry Smith MPI_Comm comm, pcomm; 2006a0a83eb5SRémi Lacroix PetscInt clocal_size, nrows; 200782094794SBarry Smith const PetscInt *rows; 2008dbf0e21dSBarry Smith PetscMPIInt size; 2009a0a83eb5SRémi Lacroix IS crowp, lcolp; 201082094794SBarry Smith 201182094794SBarry Smith PetscFunctionBegin; 20129566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)A, &comm)); 201382094794SBarry Smith /* make a collective version of 'rowp' */ 20149566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)rowp, &pcomm)); 201582094794SBarry Smith if (pcomm == comm) { 201682094794SBarry Smith crowp = rowp; 201782094794SBarry Smith } else { 20189566063dSJacob Faibussowitsch PetscCall(ISGetSize(rowp, &nrows)); 20199566063dSJacob Faibussowitsch PetscCall(ISGetIndices(rowp, &rows)); 20209566063dSJacob Faibussowitsch PetscCall(ISCreateGeneral(comm, nrows, rows, PETSC_COPY_VALUES, &crowp)); 20219566063dSJacob Faibussowitsch PetscCall(ISRestoreIndices(rowp, &rows)); 202282094794SBarry Smith } 20239566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(crowp)); 2024a0a83eb5SRémi Lacroix /* make a local version of 'colp' */ 20259566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)colp, &pcomm)); 20269566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(pcomm, &size)); 2027dbf0e21dSBarry Smith if (size == 1) { 202882094794SBarry Smith lcolp = colp; 202982094794SBarry Smith } else { 20309566063dSJacob Faibussowitsch PetscCall(ISAllGather(colp, &lcolp)); 203182094794SBarry Smith } 20329566063dSJacob Faibussowitsch PetscCall(ISSetPermutation(lcolp)); 203375f6568bSJed Brown /* now we just get the submatrix */ 20349566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(A, NULL, &clocal_size)); 20359566063dSJacob Faibussowitsch PetscCall(MatCreateSubMatrix_MPIBAIJ_Private(A, crowp, lcolp, clocal_size, MAT_INITIAL_MATRIX, B)); 2036a0a83eb5SRémi Lacroix /* clean up */ 2037*48a46eb9SPierre Jolivet if (pcomm != comm) PetscCall(ISDestroy(&crowp)); 2038*48a46eb9SPierre Jolivet if (size > 1) PetscCall(ISDestroy(&lcolp)); 203982094794SBarry Smith PetscFunctionReturn(0); 204082094794SBarry Smith } 204182094794SBarry Smith 20429371c9d4SSatish Balay PetscErrorCode MatGetGhosts_MPIBAIJ(Mat mat, PetscInt *nghosts, const PetscInt *ghosts[]) { 20438c7482ecSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 20448c7482ecSBarry Smith Mat_SeqBAIJ *B = (Mat_SeqBAIJ *)baij->B->data; 20458c7482ecSBarry Smith 20468c7482ecSBarry Smith PetscFunctionBegin; 204726fbe8dcSKarl Rupp if (nghosts) *nghosts = B->nbs; 204826fbe8dcSKarl Rupp if (ghosts) *ghosts = baij->garray; 20498c7482ecSBarry Smith PetscFunctionReturn(0); 20508c7482ecSBarry Smith } 20518c7482ecSBarry Smith 20529371c9d4SSatish Balay PetscErrorCode MatGetSeqNonzeroStructure_MPIBAIJ(Mat A, Mat *newmat) { 2053f6d58c54SBarry Smith Mat B; 2054f6d58c54SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2055f6d58c54SBarry Smith Mat_SeqBAIJ *ad = (Mat_SeqBAIJ *)a->A->data, *bd = (Mat_SeqBAIJ *)a->B->data; 2056f6d58c54SBarry Smith Mat_SeqAIJ *b; 2057f4259b30SLisandro Dalcin PetscMPIInt size, rank, *recvcounts = NULL, *displs = NULL; 2058f6d58c54SBarry Smith PetscInt sendcount, i, *rstarts = A->rmap->range, n, cnt, j, bs = A->rmap->bs; 2059f6d58c54SBarry Smith PetscInt m, *garray = a->garray, *lens, *jsendbuf, *a_jsendbuf, *b_jsendbuf; 2060f6d58c54SBarry Smith 2061f6d58c54SBarry Smith PetscFunctionBegin; 20629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)A), &size)); 20639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)A), &rank)); 2064f6d58c54SBarry Smith 2065f6d58c54SBarry Smith /* ---------------------------------------------------------------- 2066f6d58c54SBarry Smith Tell every processor the number of nonzeros per row 2067f6d58c54SBarry Smith */ 20689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(A->rmap->N / bs, &lens)); 20699371c9d4SSatish Balay for (i = A->rmap->rstart / bs; i < A->rmap->rend / bs; i++) { lens[i] = ad->i[i - A->rmap->rstart / bs + 1] - ad->i[i - A->rmap->rstart / bs] + bd->i[i - A->rmap->rstart / bs + 1] - bd->i[i - A->rmap->rstart / bs]; } 20709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(2 * size, &recvcounts)); 2071f6d58c54SBarry Smith displs = recvcounts + size; 2072f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2073f6d58c54SBarry Smith recvcounts[i] = A->rmap->range[i + 1] / bs - A->rmap->range[i] / bs; 2074f6d58c54SBarry Smith displs[i] = A->rmap->range[i] / bs; 2075f6d58c54SBarry Smith } 20769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, lens, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 2077f6d58c54SBarry Smith /* --------------------------------------------------------------- 2078f6d58c54SBarry Smith Create the sequential matrix of the same type as the local block diagonal 2079f6d58c54SBarry Smith */ 20809566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &B)); 20819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->N / bs, A->cmap->N / bs, PETSC_DETERMINE, PETSC_DETERMINE)); 20829566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATSEQAIJ)); 20839566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, lens)); 2084f6d58c54SBarry Smith b = (Mat_SeqAIJ *)B->data; 2085f6d58c54SBarry Smith 2086f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2087f6d58c54SBarry Smith Copy my part of matrix column indices over 2088f6d58c54SBarry Smith */ 2089f6d58c54SBarry Smith sendcount = ad->nz + bd->nz; 2090f6d58c54SBarry Smith jsendbuf = b->j + b->i[rstarts[rank] / bs]; 2091f6d58c54SBarry Smith a_jsendbuf = ad->j; 2092f6d58c54SBarry Smith b_jsendbuf = bd->j; 2093f6d58c54SBarry Smith n = A->rmap->rend / bs - A->rmap->rstart / bs; 2094f6d58c54SBarry Smith cnt = 0; 2095f6d58c54SBarry Smith for (i = 0; i < n; i++) { 2096f6d58c54SBarry Smith /* put in lower diagonal portion */ 2097f6d58c54SBarry Smith m = bd->i[i + 1] - bd->i[i]; 2098f6d58c54SBarry Smith while (m > 0) { 2099f6d58c54SBarry Smith /* is it above diagonal (in bd (compressed) numbering) */ 2100f6d58c54SBarry Smith if (garray[*b_jsendbuf] > A->rmap->rstart / bs + i) break; 2101f6d58c54SBarry Smith jsendbuf[cnt++] = garray[*b_jsendbuf++]; 2102f6d58c54SBarry Smith m--; 2103f6d58c54SBarry Smith } 2104f6d58c54SBarry Smith 2105f6d58c54SBarry Smith /* put in diagonal portion */ 21069371c9d4SSatish Balay for (j = ad->i[i]; j < ad->i[i + 1]; j++) { jsendbuf[cnt++] = A->rmap->rstart / bs + *a_jsendbuf++; } 2107f6d58c54SBarry Smith 2108f6d58c54SBarry Smith /* put in upper diagonal portion */ 21099371c9d4SSatish Balay while (m-- > 0) { jsendbuf[cnt++] = garray[*b_jsendbuf++]; } 2110f6d58c54SBarry Smith } 21115f80ce2aSJacob Faibussowitsch PetscCheck(cnt == sendcount, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Corrupted PETSc matrix: nz given %" PetscInt_FMT " actual nz %" PetscInt_FMT, sendcount, cnt); 2112f6d58c54SBarry Smith 2113f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2114f6d58c54SBarry Smith Gather all column indices to all processors 2115f6d58c54SBarry Smith */ 2116f6d58c54SBarry Smith for (i = 0; i < size; i++) { 2117f6d58c54SBarry Smith recvcounts[i] = 0; 21189371c9d4SSatish Balay for (j = A->rmap->range[i] / bs; j < A->rmap->range[i + 1] / bs; j++) { recvcounts[i] += lens[j]; } 2119f6d58c54SBarry Smith } 2120f6d58c54SBarry Smith displs[0] = 0; 21219371c9d4SSatish Balay for (i = 1; i < size; i++) { displs[i] = displs[i - 1] + recvcounts[i - 1]; } 21229566063dSJacob Faibussowitsch PetscCallMPI(MPI_Allgatherv(MPI_IN_PLACE, 0, MPI_DATATYPE_NULL, b->j, recvcounts, displs, MPIU_INT, PetscObjectComm((PetscObject)A))); 2123f6d58c54SBarry Smith /*-------------------------------------------------------------------- 2124f6d58c54SBarry Smith Assemble the matrix into useable form (note numerical values not yet set) 2125f6d58c54SBarry Smith */ 2126f6d58c54SBarry Smith /* set the b->ilen (length of each row) values */ 21279566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(b->ilen, lens, A->rmap->N / bs)); 2128f6d58c54SBarry Smith /* set the b->i indices */ 2129f6d58c54SBarry Smith b->i[0] = 0; 21309371c9d4SSatish Balay for (i = 1; i <= A->rmap->N / bs; i++) { b->i[i] = b->i[i - 1] + lens[i - 1]; } 21319566063dSJacob Faibussowitsch PetscCall(PetscFree(lens)); 21329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 21339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 21349566063dSJacob Faibussowitsch PetscCall(PetscFree(recvcounts)); 2135f6d58c54SBarry Smith 2136b94d7dedSBarry Smith PetscCall(MatPropagateSymmetryOptions(A, B)); 2137f6d58c54SBarry Smith *newmat = B; 2138f6d58c54SBarry Smith PetscFunctionReturn(0); 2139f6d58c54SBarry Smith } 2140f6d58c54SBarry Smith 21419371c9d4SSatish Balay PetscErrorCode MatSOR_MPIBAIJ(Mat matin, Vec bb, PetscReal omega, MatSORType flag, PetscReal fshift, PetscInt its, PetscInt lits, Vec xx) { 2142b1a666ecSBarry Smith Mat_MPIBAIJ *mat = (Mat_MPIBAIJ *)matin->data; 2143f4259b30SLisandro Dalcin Vec bb1 = NULL; 2144b1a666ecSBarry Smith 2145b1a666ecSBarry Smith PetscFunctionBegin; 2146b1a666ecSBarry Smith if (flag == SOR_APPLY_UPPER) { 21479566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2148b1a666ecSBarry Smith PetscFunctionReturn(0); 2149b1a666ecSBarry Smith } 2150b1a666ecSBarry Smith 2151*48a46eb9SPierre Jolivet if (its > 1 || ~flag & SOR_ZERO_INITIAL_GUESS) PetscCall(VecDuplicate(bb, &bb1)); 21524e980039SJed Brown 2153b1a666ecSBarry Smith if ((flag & SOR_LOCAL_SYMMETRIC_SWEEP) == SOR_LOCAL_SYMMETRIC_SWEEP) { 2154b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21559566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2156b1a666ecSBarry Smith its--; 2157b1a666ecSBarry Smith } 2158b1a666ecSBarry Smith 2159b1a666ecSBarry Smith while (its--) { 21609566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21619566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2162b1a666ecSBarry Smith 2163b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21649566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21659566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2166b1a666ecSBarry Smith 2167b1a666ecSBarry Smith /* local sweep */ 21689566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_SYMMETRIC_SWEEP, fshift, lits, 1, xx)); 2169b1a666ecSBarry Smith } 2170b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_FORWARD_SWEEP) { 2171b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21729566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2173b1a666ecSBarry Smith its--; 2174b1a666ecSBarry Smith } 2175b1a666ecSBarry Smith while (its--) { 21769566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21779566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2178b1a666ecSBarry Smith 2179b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21809566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21819566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2182b1a666ecSBarry Smith 2183b1a666ecSBarry Smith /* local sweep */ 21849566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_FORWARD_SWEEP, fshift, lits, 1, xx)); 2185b1a666ecSBarry Smith } 2186b1a666ecSBarry Smith } else if (flag & SOR_LOCAL_BACKWARD_SWEEP) { 2187b1a666ecSBarry Smith if (flag & SOR_ZERO_INITIAL_GUESS) { 21889566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb, omega, flag, fshift, lits, 1, xx)); 2189b1a666ecSBarry Smith its--; 2190b1a666ecSBarry Smith } 2191b1a666ecSBarry Smith while (its--) { 21929566063dSJacob Faibussowitsch PetscCall(VecScatterBegin(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 21939566063dSJacob Faibussowitsch PetscCall(VecScatterEnd(mat->Mvctx, xx, mat->lvec, INSERT_VALUES, SCATTER_FORWARD)); 2194b1a666ecSBarry Smith 2195b1a666ecSBarry Smith /* update rhs: bb1 = bb - B*x */ 21969566063dSJacob Faibussowitsch PetscCall(VecScale(mat->lvec, -1.0)); 21979566063dSJacob Faibussowitsch PetscCall((*mat->B->ops->multadd)(mat->B, mat->lvec, bb, bb1)); 2198b1a666ecSBarry Smith 2199b1a666ecSBarry Smith /* local sweep */ 22009566063dSJacob Faibussowitsch PetscCall((*mat->A->ops->sor)(mat->A, bb1, omega, SOR_BACKWARD_SWEEP, fshift, lits, 1, xx)); 2201b1a666ecSBarry Smith } 2202ce94432eSBarry Smith } else SETERRQ(PetscObjectComm((PetscObject)matin), PETSC_ERR_SUP, "Parallel version of SOR requested not supported"); 2203b1a666ecSBarry Smith 22049566063dSJacob Faibussowitsch PetscCall(VecDestroy(&bb1)); 2205b1a666ecSBarry Smith PetscFunctionReturn(0); 2206b1a666ecSBarry Smith } 2207b1a666ecSBarry Smith 22089371c9d4SSatish Balay PetscErrorCode MatGetColumnReductions_MPIBAIJ(Mat A, PetscInt type, PetscReal *reductions) { 220947f7623dSRémi Lacroix Mat_MPIBAIJ *aij = (Mat_MPIBAIJ *)A->data; 2210a873a8cdSSam Reynolds PetscInt m, N, i, *garray = aij->garray; 221147f7623dSRémi Lacroix PetscInt ib, jb, bs = A->rmap->bs; 221247f7623dSRémi Lacroix Mat_SeqBAIJ *a_aij = (Mat_SeqBAIJ *)aij->A->data; 221347f7623dSRémi Lacroix MatScalar *a_val = a_aij->a; 221447f7623dSRémi Lacroix Mat_SeqBAIJ *b_aij = (Mat_SeqBAIJ *)aij->B->data; 221547f7623dSRémi Lacroix MatScalar *b_val = b_aij->a; 221647f7623dSRémi Lacroix PetscReal *work; 221747f7623dSRémi Lacroix 221847f7623dSRémi Lacroix PetscFunctionBegin; 22199566063dSJacob Faibussowitsch PetscCall(MatGetSize(A, &m, &N)); 22209566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(N, &work)); 2221857cbf51SRichard Tran Mills if (type == NORM_2) { 222247f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 222347f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 222447f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 222547f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val * *a_val); 222647f7623dSRémi Lacroix a_val++; 222747f7623dSRémi Lacroix } 222847f7623dSRémi Lacroix } 222947f7623dSRémi Lacroix } 223047f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 223147f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 223247f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 223347f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val * *b_val); 223447f7623dSRémi Lacroix b_val++; 223547f7623dSRémi Lacroix } 223647f7623dSRémi Lacroix } 223747f7623dSRémi Lacroix } 2238857cbf51SRichard Tran Mills } else if (type == NORM_1) { 223947f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 224047f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 224147f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 224247f7623dSRémi Lacroix work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscAbsScalar(*a_val); 224347f7623dSRémi Lacroix a_val++; 224447f7623dSRémi Lacroix } 224547f7623dSRémi Lacroix } 224647f7623dSRémi Lacroix } 224747f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 224847f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 224947f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225047f7623dSRémi Lacroix work[garray[b_aij->j[i]] * bs + jb] += PetscAbsScalar(*b_val); 225147f7623dSRémi Lacroix b_val++; 225247f7623dSRémi Lacroix } 225347f7623dSRémi Lacroix } 225447f7623dSRémi Lacroix } 2255857cbf51SRichard Tran Mills } else if (type == NORM_INFINITY) { 225647f7623dSRémi Lacroix for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 225747f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 225847f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 225947f7623dSRémi Lacroix int col = A->cmap->rstart + a_aij->j[i] * bs + jb; 226047f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*a_val), work[col]); 226147f7623dSRémi Lacroix a_val++; 226247f7623dSRémi Lacroix } 226347f7623dSRémi Lacroix } 226447f7623dSRémi Lacroix } 226547f7623dSRémi Lacroix for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 226647f7623dSRémi Lacroix for (jb = 0; jb < bs; jb++) { 226747f7623dSRémi Lacroix for (ib = 0; ib < bs; ib++) { 226847f7623dSRémi Lacroix int col = garray[b_aij->j[i]] * bs + jb; 226947f7623dSRémi Lacroix work[col] = PetscMax(PetscAbsScalar(*b_val), work[col]); 227047f7623dSRémi Lacroix b_val++; 227147f7623dSRémi Lacroix } 227247f7623dSRémi Lacroix } 227347f7623dSRémi Lacroix } 2274857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_REALPART || type == REDUCTION_MEAN_REALPART) { 2275a873a8cdSSam Reynolds for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2276a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2277a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2278857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscRealPart(*a_val); 2279a873a8cdSSam Reynolds a_val++; 2280a873a8cdSSam Reynolds } 2281a873a8cdSSam Reynolds } 2282a873a8cdSSam Reynolds } 2283a873a8cdSSam Reynolds for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2284a873a8cdSSam Reynolds for (jb = 0; jb < bs; jb++) { 2285a873a8cdSSam Reynolds for (ib = 0; ib < bs; ib++) { 2286857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscRealPart(*b_val); 2287a873a8cdSSam Reynolds b_val++; 2288a873a8cdSSam Reynolds } 2289a873a8cdSSam Reynolds } 2290a873a8cdSSam Reynolds } 2291857cbf51SRichard Tran Mills } else if (type == REDUCTION_SUM_IMAGINARYPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2292857cbf51SRichard Tran Mills for (i = a_aij->i[0]; i < a_aij->i[aij->A->rmap->n / bs]; i++) { 2293857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2294857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2295857cbf51SRichard Tran Mills work[A->cmap->rstart + a_aij->j[i] * bs + jb] += PetscImaginaryPart(*a_val); 2296857cbf51SRichard Tran Mills a_val++; 2297857cbf51SRichard Tran Mills } 2298857cbf51SRichard Tran Mills } 2299857cbf51SRichard Tran Mills } 2300857cbf51SRichard Tran Mills for (i = b_aij->i[0]; i < b_aij->i[aij->B->rmap->n / bs]; i++) { 2301857cbf51SRichard Tran Mills for (jb = 0; jb < bs; jb++) { 2302857cbf51SRichard Tran Mills for (ib = 0; ib < bs; ib++) { 2303857cbf51SRichard Tran Mills work[garray[b_aij->j[i]] * bs + jb] += PetscImaginaryPart(*b_val); 2304857cbf51SRichard Tran Mills b_val++; 2305857cbf51SRichard Tran Mills } 2306857cbf51SRichard Tran Mills } 2307857cbf51SRichard Tran Mills } 2308857cbf51SRichard Tran Mills } else SETERRQ(PetscObjectComm((PetscObject)A), PETSC_ERR_ARG_WRONG, "Unknown reduction type"); 2309857cbf51SRichard Tran Mills if (type == NORM_INFINITY) { 23101c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_MAX, PetscObjectComm((PetscObject)A))); 231147f7623dSRémi Lacroix } else { 23121c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(work, reductions, N, MPIU_REAL, MPIU_SUM, PetscObjectComm((PetscObject)A))); 231347f7623dSRémi Lacroix } 23149566063dSJacob Faibussowitsch PetscCall(PetscFree(work)); 2315857cbf51SRichard Tran Mills if (type == NORM_2) { 2316a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] = PetscSqrtReal(reductions[i]); 2317857cbf51SRichard Tran Mills } else if (type == REDUCTION_MEAN_REALPART || type == REDUCTION_MEAN_IMAGINARYPART) { 2318a873a8cdSSam Reynolds for (i = 0; i < N; i++) reductions[i] /= m; 231947f7623dSRémi Lacroix } 232047f7623dSRémi Lacroix PetscFunctionReturn(0); 232147f7623dSRémi Lacroix } 232247f7623dSRémi Lacroix 23239371c9d4SSatish Balay PetscErrorCode MatInvertBlockDiagonal_MPIBAIJ(Mat A, const PetscScalar **values) { 2324bbead8a2SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 2325bbead8a2SBarry Smith 2326bbead8a2SBarry Smith PetscFunctionBegin; 23279566063dSJacob Faibussowitsch PetscCall(MatInvertBlockDiagonal(a->A, values)); 23287b6c816cSBarry Smith A->factorerrortype = a->A->factorerrortype; 23297b6c816cSBarry Smith A->factorerror_zeropivot_value = a->A->factorerror_zeropivot_value; 23307b6c816cSBarry Smith A->factorerror_zeropivot_row = a->A->factorerror_zeropivot_row; 2331bbead8a2SBarry Smith PetscFunctionReturn(0); 2332bbead8a2SBarry Smith } 2333bbead8a2SBarry Smith 23349371c9d4SSatish Balay PetscErrorCode MatShift_MPIBAIJ(Mat Y, PetscScalar a) { 23357d68702bSBarry Smith Mat_MPIBAIJ *maij = (Mat_MPIBAIJ *)Y->data; 23366f33a894SBarry Smith Mat_SeqBAIJ *aij = (Mat_SeqBAIJ *)maij->A->data; 23377d68702bSBarry Smith 23387d68702bSBarry Smith PetscFunctionBegin; 23396f33a894SBarry Smith if (!Y->preallocated) { 23409566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(Y, Y->rmap->bs, 1, NULL, 0, NULL)); 23416f33a894SBarry Smith } else if (!aij->nz) { 2342b83222d8SBarry Smith PetscInt nonew = aij->nonew; 23439566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(maij->A, Y->rmap->bs, 1, NULL)); 2344b83222d8SBarry Smith aij->nonew = nonew; 23457d68702bSBarry Smith } 23469566063dSJacob Faibussowitsch PetscCall(MatShift_Basic(Y, a)); 23477d68702bSBarry Smith PetscFunctionReturn(0); 23487d68702bSBarry Smith } 23498c7482ecSBarry Smith 23509371c9d4SSatish Balay PetscErrorCode MatMissingDiagonal_MPIBAIJ(Mat A, PetscBool *missing, PetscInt *d) { 23513b49f96aSBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 23523b49f96aSBarry Smith 23533b49f96aSBarry Smith PetscFunctionBegin; 23545f80ce2aSJacob Faibussowitsch PetscCheck(A->rmap->n == A->cmap->n, PETSC_COMM_SELF, PETSC_ERR_SUP, "Only works for square matrices"); 23559566063dSJacob Faibussowitsch PetscCall(MatMissingDiagonal(a->A, missing, d)); 23563b49f96aSBarry Smith if (d) { 23573b49f96aSBarry Smith PetscInt rstart; 23589566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(A, &rstart, NULL)); 23593b49f96aSBarry Smith *d += rstart / A->rmap->bs; 23603b49f96aSBarry Smith } 23613b49f96aSBarry Smith PetscFunctionReturn(0); 23623b49f96aSBarry Smith } 23633b49f96aSBarry Smith 23649371c9d4SSatish Balay PetscErrorCode MatGetDiagonalBlock_MPIBAIJ(Mat A, Mat *a) { 2365a5b7ff6bSBarry Smith PetscFunctionBegin; 2366a5b7ff6bSBarry Smith *a = ((Mat_MPIBAIJ *)A->data)->A; 2367a5b7ff6bSBarry Smith PetscFunctionReturn(0); 2368a5b7ff6bSBarry Smith } 2369a5b7ff6bSBarry Smith 237079bdfe76SSatish Balay /* -------------------------------------------------------------------*/ 23713964eb88SJed Brown static struct _MatOps MatOps_Values = {MatSetValues_MPIBAIJ, 2372cc2dc46cSBarry Smith MatGetRow_MPIBAIJ, 2373cc2dc46cSBarry Smith MatRestoreRow_MPIBAIJ, 2374cc2dc46cSBarry Smith MatMult_MPIBAIJ, 237597304618SKris Buschelman /* 4*/ MatMultAdd_MPIBAIJ, 23767c922b88SBarry Smith MatMultTranspose_MPIBAIJ, 23777c922b88SBarry Smith MatMultTransposeAdd_MPIBAIJ, 2378f4259b30SLisandro Dalcin NULL, 2379f4259b30SLisandro Dalcin NULL, 2380f4259b30SLisandro Dalcin NULL, 2381f4259b30SLisandro Dalcin /*10*/ NULL, 2382f4259b30SLisandro Dalcin NULL, 2383f4259b30SLisandro Dalcin NULL, 2384b1a666ecSBarry Smith MatSOR_MPIBAIJ, 2385cc2dc46cSBarry Smith MatTranspose_MPIBAIJ, 238697304618SKris Buschelman /*15*/ MatGetInfo_MPIBAIJ, 23877fc3c18eSBarry Smith MatEqual_MPIBAIJ, 2388cc2dc46cSBarry Smith MatGetDiagonal_MPIBAIJ, 2389cc2dc46cSBarry Smith MatDiagonalScale_MPIBAIJ, 2390cc2dc46cSBarry Smith MatNorm_MPIBAIJ, 239197304618SKris Buschelman /*20*/ MatAssemblyBegin_MPIBAIJ, 2392cc2dc46cSBarry Smith MatAssemblyEnd_MPIBAIJ, 2393cc2dc46cSBarry Smith MatSetOption_MPIBAIJ, 2394cc2dc46cSBarry Smith MatZeroEntries_MPIBAIJ, 2395d519adbfSMatthew Knepley /*24*/ MatZeroRows_MPIBAIJ, 2396f4259b30SLisandro Dalcin NULL, 2397f4259b30SLisandro Dalcin NULL, 2398f4259b30SLisandro Dalcin NULL, 2399f4259b30SLisandro Dalcin NULL, 24004994cf47SJed Brown /*29*/ MatSetUp_MPIBAIJ, 2401f4259b30SLisandro Dalcin NULL, 2402f4259b30SLisandro Dalcin NULL, 2403a5b7ff6bSBarry Smith MatGetDiagonalBlock_MPIBAIJ, 2404f4259b30SLisandro Dalcin NULL, 2405d519adbfSMatthew Knepley /*34*/ MatDuplicate_MPIBAIJ, 2406f4259b30SLisandro Dalcin NULL, 2407f4259b30SLisandro Dalcin NULL, 2408f4259b30SLisandro Dalcin NULL, 2409f4259b30SLisandro Dalcin NULL, 2410d519adbfSMatthew Knepley /*39*/ MatAXPY_MPIBAIJ, 24117dae84e0SHong Zhang MatCreateSubMatrices_MPIBAIJ, 2412cc2dc46cSBarry Smith MatIncreaseOverlap_MPIBAIJ, 2413cc2dc46cSBarry Smith MatGetValues_MPIBAIJ, 24143c896bc6SHong Zhang MatCopy_MPIBAIJ, 2415f4259b30SLisandro Dalcin /*44*/ NULL, 2416cc2dc46cSBarry Smith MatScale_MPIBAIJ, 24177d68702bSBarry Smith MatShift_MPIBAIJ, 2418f4259b30SLisandro Dalcin NULL, 24196f0a72daSMatthew G. Knepley MatZeroRowsColumns_MPIBAIJ, 2420f4259b30SLisandro Dalcin /*49*/ NULL, 2421f4259b30SLisandro Dalcin NULL, 2422f4259b30SLisandro Dalcin NULL, 2423f4259b30SLisandro Dalcin NULL, 2424f4259b30SLisandro Dalcin NULL, 242593dfae19SHong Zhang /*54*/ MatFDColoringCreate_MPIXAIJ, 2426f4259b30SLisandro Dalcin NULL, 2427cc2dc46cSBarry Smith MatSetUnfactored_MPIBAIJ, 242882094794SBarry Smith MatPermute_MPIBAIJ, 2429cc2dc46cSBarry Smith MatSetValuesBlocked_MPIBAIJ, 24307dae84e0SHong Zhang /*59*/ MatCreateSubMatrix_MPIBAIJ, 2431f14a1c24SBarry Smith MatDestroy_MPIBAIJ, 2432f14a1c24SBarry Smith MatView_MPIBAIJ, 2433f4259b30SLisandro Dalcin NULL, 2434f4259b30SLisandro Dalcin NULL, 2435f4259b30SLisandro Dalcin /*64*/ NULL, 2436f4259b30SLisandro Dalcin NULL, 2437f4259b30SLisandro Dalcin NULL, 2438f4259b30SLisandro Dalcin NULL, 2439f4259b30SLisandro Dalcin NULL, 2440d519adbfSMatthew Knepley /*69*/ MatGetRowMaxAbs_MPIBAIJ, 2441f4259b30SLisandro Dalcin NULL, 2442f4259b30SLisandro Dalcin NULL, 2443f4259b30SLisandro Dalcin NULL, 2444f4259b30SLisandro Dalcin NULL, 2445f4259b30SLisandro Dalcin /*74*/ NULL, 2446f6d58c54SBarry Smith MatFDColoringApply_BAIJ, 2447f4259b30SLisandro Dalcin NULL, 2448f4259b30SLisandro Dalcin NULL, 2449f4259b30SLisandro Dalcin NULL, 2450f4259b30SLisandro Dalcin /*79*/ NULL, 2451f4259b30SLisandro Dalcin NULL, 2452f4259b30SLisandro Dalcin NULL, 2453f4259b30SLisandro Dalcin NULL, 24545bba2384SShri Abhyankar MatLoad_MPIBAIJ, 2455f4259b30SLisandro Dalcin /*84*/ NULL, 2456f4259b30SLisandro Dalcin NULL, 2457f4259b30SLisandro Dalcin NULL, 2458f4259b30SLisandro Dalcin NULL, 2459f4259b30SLisandro Dalcin NULL, 2460f4259b30SLisandro Dalcin /*89*/ NULL, 2461f4259b30SLisandro Dalcin NULL, 2462f4259b30SLisandro Dalcin NULL, 2463f4259b30SLisandro Dalcin NULL, 2464f4259b30SLisandro Dalcin NULL, 2465f4259b30SLisandro Dalcin /*94*/ NULL, 2466f4259b30SLisandro Dalcin NULL, 2467f4259b30SLisandro Dalcin NULL, 2468f4259b30SLisandro Dalcin NULL, 2469f4259b30SLisandro Dalcin NULL, 2470f4259b30SLisandro Dalcin /*99*/ NULL, 2471f4259b30SLisandro Dalcin NULL, 2472f4259b30SLisandro Dalcin NULL, 24732726fb6dSPierre Jolivet MatConjugate_MPIBAIJ, 2474f4259b30SLisandro Dalcin NULL, 2475f4259b30SLisandro Dalcin /*104*/ NULL, 247699cafbc1SBarry Smith MatRealPart_MPIBAIJ, 24778c7482ecSBarry Smith MatImaginaryPart_MPIBAIJ, 2478f4259b30SLisandro Dalcin NULL, 2479f4259b30SLisandro Dalcin NULL, 2480f4259b30SLisandro Dalcin /*109*/ NULL, 2481f4259b30SLisandro Dalcin NULL, 2482f4259b30SLisandro Dalcin NULL, 2483f4259b30SLisandro Dalcin NULL, 24843b49f96aSBarry Smith MatMissingDiagonal_MPIBAIJ, 2485d1adec66SJed Brown /*114*/ MatGetSeqNonzeroStructure_MPIBAIJ, 2486f4259b30SLisandro Dalcin NULL, 24874683f7a4SShri Abhyankar MatGetGhosts_MPIBAIJ, 2488f4259b30SLisandro Dalcin NULL, 2489f4259b30SLisandro Dalcin NULL, 2490f4259b30SLisandro Dalcin /*119*/ NULL, 2491f4259b30SLisandro Dalcin NULL, 2492f4259b30SLisandro Dalcin NULL, 2493f4259b30SLisandro Dalcin NULL, 2494e8271787SHong Zhang MatGetMultiProcBlock_MPIBAIJ, 2495f4259b30SLisandro Dalcin /*124*/ NULL, 2496a873a8cdSSam Reynolds MatGetColumnReductions_MPIBAIJ, 24973964eb88SJed Brown MatInvertBlockDiagonal_MPIBAIJ, 2498f4259b30SLisandro Dalcin NULL, 2499f4259b30SLisandro Dalcin NULL, 2500f4259b30SLisandro Dalcin /*129*/ NULL, 2501f4259b30SLisandro Dalcin NULL, 2502f4259b30SLisandro Dalcin NULL, 2503f4259b30SLisandro Dalcin NULL, 2504f4259b30SLisandro Dalcin NULL, 2505f4259b30SLisandro Dalcin /*134*/ NULL, 2506f4259b30SLisandro Dalcin NULL, 2507f4259b30SLisandro Dalcin NULL, 2508f4259b30SLisandro Dalcin NULL, 2509f4259b30SLisandro Dalcin NULL, 251046533700Sstefano_zampini /*139*/ MatSetBlockSizes_Default, 2511f4259b30SLisandro Dalcin NULL, 2512f4259b30SLisandro Dalcin NULL, 2513bdf6f3fcSHong Zhang MatFDColoringSetUp_MPIXAIJ, 2514f4259b30SLisandro Dalcin NULL, 2515d70f29a3SPierre Jolivet /*144*/ MatCreateMPIMatConcatenateSeqMat_MPIBAIJ, 2516d70f29a3SPierre Jolivet NULL, 2517d70f29a3SPierre Jolivet NULL, 251899a7f59eSMark Adams NULL, 251999a7f59eSMark Adams NULL, 25207fb60732SBarry Smith NULL, 25219371c9d4SSatish Balay /*150*/ NULL}; 252279bdfe76SSatish Balay 2523cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPISBAIJ(Mat, MatType, MatReuse, Mat *); 2524c9225affSStefano Zampini PETSC_INTERN PetscErrorCode MatConvert_XAIJ_IS(Mat, MatType, MatReuse, Mat *); 2525d94109b8SHong Zhang 25269371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR_MPIBAIJ(Mat B, PetscInt bs, const PetscInt ii[], const PetscInt jj[], const PetscScalar V[]) { 2527b8d659d7SLisandro Dalcin PetscInt m, rstart, cstart, cend; 2528f4259b30SLisandro Dalcin PetscInt i, j, dlen, olen, nz, nz_max = 0, *d_nnz = NULL, *o_nnz = NULL; 2529f4259b30SLisandro Dalcin const PetscInt *JJ = NULL; 2530f4259b30SLisandro Dalcin PetscScalar *values = NULL; 2531d47bf9aaSJed Brown PetscBool roworiented = ((Mat_MPIBAIJ *)B->data)->roworiented; 25323bd0feecSPierre Jolivet PetscBool nooffprocentries; 2533aac34f13SBarry Smith 2534aac34f13SBarry Smith PetscFunctionBegin; 25359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->rmap, bs)); 25369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetBlockSize(B->cmap, bs)); 25379566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 25389566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 25399566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2540d0f46423SBarry Smith m = B->rmap->n / bs; 2541d0f46423SBarry Smith rstart = B->rmap->rstart / bs; 2542d0f46423SBarry Smith cstart = B->cmap->rstart / bs; 2543d0f46423SBarry Smith cend = B->cmap->rend / bs; 2544b8d659d7SLisandro Dalcin 25455f80ce2aSJacob Faibussowitsch PetscCheck(!ii[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "ii[0] must be 0 but it is %" PetscInt_FMT, ii[0]); 25469566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(m, &d_nnz, m, &o_nnz)); 2547aac34f13SBarry Smith for (i = 0; i < m; i++) { 2548cf12db73SBarry Smith nz = ii[i + 1] - ii[i]; 25495f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Local row %" PetscInt_FMT " has a negative number of columns %" PetscInt_FMT, i, nz); 2550b8d659d7SLisandro Dalcin nz_max = PetscMax(nz_max, nz); 255137cd3c0dSBarry Smith dlen = 0; 255237cd3c0dSBarry Smith olen = 0; 2553cf12db73SBarry Smith JJ = jj + ii[i]; 2554b8d659d7SLisandro Dalcin for (j = 0; j < nz; j++) { 255537cd3c0dSBarry Smith if (*JJ < cstart || *JJ >= cend) olen++; 255637cd3c0dSBarry Smith else dlen++; 2557aac34f13SBarry Smith JJ++; 2558aac34f13SBarry Smith } 255937cd3c0dSBarry Smith d_nnz[i] = dlen; 256037cd3c0dSBarry Smith o_nnz[i] = olen; 2561aac34f13SBarry Smith } 25629566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(B, bs, 0, d_nnz, 0, o_nnz)); 25639566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 2564aac34f13SBarry Smith 2565b8d659d7SLisandro Dalcin values = (PetscScalar *)V; 2566*48a46eb9SPierre Jolivet if (!values) PetscCall(PetscCalloc1(bs * bs * nz_max, &values)); 2567b8d659d7SLisandro Dalcin for (i = 0; i < m; i++) { 2568b8d659d7SLisandro Dalcin PetscInt row = i + rstart; 2569cf12db73SBarry Smith PetscInt ncols = ii[i + 1] - ii[i]; 2570cf12db73SBarry Smith const PetscInt *icols = jj + ii[i]; 2571bb80cfbbSStefano Zampini if (bs == 1 || !roworiented) { /* block ordering matches the non-nested layout of MatSetValues so we can insert entire rows */ 2572cf12db73SBarry Smith const PetscScalar *svals = values + (V ? (bs * bs * ii[i]) : 0); 25739566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, ncols, icols, svals, INSERT_VALUES)); 25743adadaf3SJed Brown } else { /* block ordering does not match so we can only insert one block at a time. */ 25753adadaf3SJed Brown PetscInt j; 25763adadaf3SJed Brown for (j = 0; j < ncols; j++) { 25773adadaf3SJed Brown const PetscScalar *svals = values + (V ? (bs * bs * (ii[i] + j)) : 0); 25789566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_MPIBAIJ(B, 1, &row, 1, &icols[j], svals, INSERT_VALUES)); 25793adadaf3SJed Brown } 25803adadaf3SJed Brown } 2581aac34f13SBarry Smith } 2582aac34f13SBarry Smith 25839566063dSJacob Faibussowitsch if (!V) PetscCall(PetscFree(values)); 25843bd0feecSPierre Jolivet nooffprocentries = B->nooffprocentries; 25853bd0feecSPierre Jolivet B->nooffprocentries = PETSC_TRUE; 25869566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 25879566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 25883bd0feecSPierre Jolivet B->nooffprocentries = nooffprocentries; 25893bd0feecSPierre Jolivet 25909566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_NEW_NONZERO_LOCATION_ERR, PETSC_TRUE)); 2591aac34f13SBarry Smith PetscFunctionReturn(0); 2592aac34f13SBarry Smith } 2593aac34f13SBarry Smith 2594aac34f13SBarry Smith /*@C 2595664954b6SBarry Smith MatMPIBAIJSetPreallocationCSR - Creates a sparse parallel matrix in BAIJ format using the given nonzero structure and (optional) numerical values 2596aac34f13SBarry Smith 2597d083f849SBarry Smith Collective 2598aac34f13SBarry Smith 2599aac34f13SBarry Smith Input Parameters: 26001c4f3114SJed Brown + B - the matrix 2601dfb205c3SBarry Smith . bs - the block size 2602aac34f13SBarry Smith . i - the indices into j for the start of each local row (starts with zero) 2603aac34f13SBarry Smith . j - the column indices for each local row (starts with zero) these must be sorted for each row 2604aac34f13SBarry Smith - v - optional values in the matrix 2605aac34f13SBarry Smith 2606664954b6SBarry Smith Level: advanced 2607aac34f13SBarry Smith 260895452b02SPatrick Sanan Notes: 260995452b02SPatrick Sanan The order of the entries in values is specified by the MatOption MAT_ROW_ORIENTED. For example, C programs 26103adadaf3SJed Brown may want to use the default MAT_ROW_ORIENTED=PETSC_TRUE and use an array v[nnz][bs][bs] where the second index is 26113adadaf3SJed Brown over rows within a block and the last index is over columns within a block row. Fortran programs will likely set 26123adadaf3SJed Brown MAT_ROW_ORIENTED=PETSC_FALSE and use a Fortran array v(bs,bs,nnz) in which the first index is over rows within a 26133adadaf3SJed Brown block column and the second index is over columns within a block. 26143adadaf3SJed Brown 2615664954b6SBarry Smith Though this routine has Preallocation() in the name it also sets the exact nonzero locations of the matrix entries and usually the numerical values as well 2616664954b6SBarry Smith 2617db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIBAIJSetPreallocation()`, `MatCreateAIJ()`, `MPIAIJ`, `MatCreateMPIBAIJWithArrays()`, `MPIBAIJ` 2618aac34f13SBarry Smith @*/ 26199371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocationCSR(Mat B, PetscInt bs, const PetscInt i[], const PetscInt j[], const PetscScalar v[]) { 2620aac34f13SBarry Smith PetscFunctionBegin; 26216ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 26226ba663aaSJed Brown PetscValidType(B, 1); 26236ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2624cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocationCSR_C", (Mat, PetscInt, const PetscInt[], const PetscInt[], const PetscScalar[]), (B, bs, i, j, v)); 2625aac34f13SBarry Smith PetscFunctionReturn(0); 2626aac34f13SBarry Smith } 2627aac34f13SBarry Smith 26289371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocation_MPIBAIJ(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt *d_nnz, PetscInt o_nz, const PetscInt *o_nnz) { 2629a23d5eceSKris Buschelman Mat_MPIBAIJ *b; 2630535b19f3SBarry Smith PetscInt i; 26315d2a9ed1SStefano Zampini PetscMPIInt size; 2632a23d5eceSKris Buschelman 2633a23d5eceSKris Buschelman PetscFunctionBegin; 26349566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(B, PetscAbs(bs))); 26359566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->rmap)); 26369566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(B->cmap)); 26379566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetBlockSize(B->rmap, &bs)); 2638899cda47SBarry Smith 2639a23d5eceSKris Buschelman if (d_nnz) { 26409371c9d4SSatish Balay for (i = 0; i < B->rmap->n / bs; i++) { PetscCheck(d_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "d_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, d_nnz[i]); } 2641a23d5eceSKris Buschelman } 2642a23d5eceSKris Buschelman if (o_nnz) { 26439371c9d4SSatish Balay for (i = 0; i < B->rmap->n / bs; i++) { PetscCheck(o_nnz[i] >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "o_nnz cannot be less than -1: local row %" PetscInt_FMT " value %" PetscInt_FMT, i, o_nnz[i]); } 2644a23d5eceSKris Buschelman } 2645a23d5eceSKris Buschelman 2646a23d5eceSKris Buschelman b = (Mat_MPIBAIJ *)B->data; 2647a23d5eceSKris Buschelman b->bs2 = bs * bs; 2648d0f46423SBarry Smith b->mbs = B->rmap->n / bs; 2649d0f46423SBarry Smith b->nbs = B->cmap->n / bs; 2650d0f46423SBarry Smith b->Mbs = B->rmap->N / bs; 2651d0f46423SBarry Smith b->Nbs = B->cmap->N / bs; 2652a23d5eceSKris Buschelman 26539371c9d4SSatish Balay for (i = 0; i <= b->size; i++) { b->rangebs[i] = B->rmap->range[i] / bs; } 2654d0f46423SBarry Smith b->rstartbs = B->rmap->rstart / bs; 2655d0f46423SBarry Smith b->rendbs = B->rmap->rend / bs; 2656d0f46423SBarry Smith b->cstartbs = B->cmap->rstart / bs; 2657d0f46423SBarry Smith b->cendbs = B->cmap->rend / bs; 2658a23d5eceSKris Buschelman 2659cb7b82ddSBarry Smith #if defined(PETSC_USE_CTABLE) 26609566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&b->colmap)); 2661cb7b82ddSBarry Smith #else 26629566063dSJacob Faibussowitsch PetscCall(PetscFree(b->colmap)); 2663cb7b82ddSBarry Smith #endif 26649566063dSJacob Faibussowitsch PetscCall(PetscFree(b->garray)); 26659566063dSJacob Faibussowitsch PetscCall(VecDestroy(&b->lvec)); 26669566063dSJacob Faibussowitsch PetscCall(VecScatterDestroy(&b->Mvctx)); 2667cb7b82ddSBarry Smith 2668cb7b82ddSBarry Smith /* Because the B will have been resized we simply destroy it and create a new one each time */ 26699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &size)); 26709566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 26719566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->B)); 26729566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->B, B->rmap->n, size > 1 ? B->cmap->N : 0, B->rmap->n, size > 1 ? B->cmap->N : 0)); 26739566063dSJacob Faibussowitsch PetscCall(MatSetType(b->B, MATSEQBAIJ)); 26749566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->B)); 2675cb7b82ddSBarry Smith 2676526dfc15SBarry Smith if (!B->preallocated) { 26779566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_SELF, &b->A)); 26789566063dSJacob Faibussowitsch PetscCall(MatSetSizes(b->A, B->rmap->n, B->cmap->n, B->rmap->n, B->cmap->n)); 26799566063dSJacob Faibussowitsch PetscCall(MatSetType(b->A, MATSEQBAIJ)); 26809566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)B, (PetscObject)b->A)); 26819566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), bs, &B->bstash)); 2682526dfc15SBarry Smith } 2683a23d5eceSKris Buschelman 26849566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->A, bs, d_nz, d_nnz)); 26859566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(b->B, bs, o_nz, o_nnz)); 2686526dfc15SBarry Smith B->preallocated = PETSC_TRUE; 2687cb7b82ddSBarry Smith B->was_assembled = PETSC_FALSE; 2688cb7b82ddSBarry Smith B->assembled = PETSC_FALSE; 2689a23d5eceSKris Buschelman PetscFunctionReturn(0); 2690a23d5eceSKris Buschelman } 2691a23d5eceSKris Buschelman 26927087cfbeSBarry Smith extern PetscErrorCode MatDiagonalScaleLocal_MPIBAIJ(Mat, Vec); 26937087cfbeSBarry Smith extern PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat, PetscReal); 26945bf65638SKris Buschelman 26959371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAdj(Mat B, MatType newtype, MatReuse reuse, Mat *adj) { 269682094794SBarry Smith Mat_MPIBAIJ *b = (Mat_MPIBAIJ *)B->data; 269782094794SBarry Smith Mat_SeqBAIJ *d = (Mat_SeqBAIJ *)b->A->data, *o = (Mat_SeqBAIJ *)b->B->data; 269882094794SBarry Smith PetscInt M = B->rmap->n / B->rmap->bs, i, *ii, *jj, cnt, j, k, rstart = B->rmap->rstart / B->rmap->bs; 269982094794SBarry Smith const PetscInt *id = d->i, *jd = d->j, *io = o->i, *jo = o->j, *garray = b->garray; 270082094794SBarry Smith 270182094794SBarry Smith PetscFunctionBegin; 27029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(M + 1, &ii)); 270382094794SBarry Smith ii[0] = 0; 270482094794SBarry Smith for (i = 0; i < M; i++) { 270508401ef6SPierre Jolivet PetscCheck((id[i + 1] - id[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, id[i], id[i + 1]); 270608401ef6SPierre Jolivet PetscCheck((io[i + 1] - io[i]) >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Indices wrong %" PetscInt_FMT " %" PetscInt_FMT " %" PetscInt_FMT, i, io[i], io[i + 1]); 270782094794SBarry Smith ii[i + 1] = ii[i] + id[i + 1] - id[i] + io[i + 1] - io[i]; 27085ee9ba1cSJed Brown /* remove one from count of matrix has diagonal */ 27095ee9ba1cSJed Brown for (j = id[i]; j < id[i + 1]; j++) { 27109371c9d4SSatish Balay if (jd[j] == i) { 27119371c9d4SSatish Balay ii[i + 1]--; 27129371c9d4SSatish Balay break; 27139371c9d4SSatish Balay } 27145ee9ba1cSJed Brown } 271582094794SBarry Smith } 27169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(ii[M], &jj)); 271782094794SBarry Smith cnt = 0; 271882094794SBarry Smith for (i = 0; i < M; i++) { 271982094794SBarry Smith for (j = io[i]; j < io[i + 1]; j++) { 272082094794SBarry Smith if (garray[jo[j]] > rstart) break; 272182094794SBarry Smith jj[cnt++] = garray[jo[j]]; 272282094794SBarry Smith } 272382094794SBarry Smith for (k = id[i]; k < id[i + 1]; k++) { 27249371c9d4SSatish Balay if (jd[k] != i) { jj[cnt++] = rstart + jd[k]; } 272582094794SBarry Smith } 27269371c9d4SSatish Balay for (; j < io[i + 1]; j++) { jj[cnt++] = garray[jo[j]]; } 272782094794SBarry Smith } 27289566063dSJacob Faibussowitsch PetscCall(MatCreateMPIAdj(PetscObjectComm((PetscObject)B), M, B->cmap->N / B->rmap->bs, ii, jj, NULL, adj)); 272982094794SBarry Smith PetscFunctionReturn(0); 273082094794SBarry Smith } 273182094794SBarry Smith 2732c6db04a5SJed Brown #include <../src/mat/impls/aij/mpi/mpiaij.h> 273362471d69SBarry Smith 2734cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_SeqBAIJ_SeqAIJ(Mat, MatType, MatReuse, Mat *); 2735b2573a8aSBarry Smith 27369371c9d4SSatish Balay PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIAIJ(Mat A, MatType newtype, MatReuse reuse, Mat *newmat) { 273762471d69SBarry Smith Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 273885a69837SSatish Balay Mat_MPIAIJ *b; 27395f80ce2aSJacob Faibussowitsch Mat B; 274062471d69SBarry Smith 274162471d69SBarry Smith PetscFunctionBegin; 27425f80ce2aSJacob Faibussowitsch PetscCheck(A->assembled, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "Matrix must be assembled"); 274362471d69SBarry Smith 27440f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27450f6d62edSLisandro Dalcin B = *newmat; 27460f6d62edSLisandro Dalcin } else { 27479566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)A), &B)); 27489566063dSJacob Faibussowitsch PetscCall(MatSetType(B, MATMPIAIJ)); 27499566063dSJacob Faibussowitsch PetscCall(MatSetSizes(B, A->rmap->n, A->cmap->n, A->rmap->N, A->cmap->N)); 27509566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(B, A->rmap->bs, A->cmap->bs)); 27519566063dSJacob Faibussowitsch PetscCall(MatSeqAIJSetPreallocation(B, 0, NULL)); 27529566063dSJacob Faibussowitsch PetscCall(MatMPIAIJSetPreallocation(B, 0, NULL, 0, NULL)); 27530f6d62edSLisandro Dalcin } 275462471d69SBarry Smith b = (Mat_MPIAIJ *)B->data; 275562471d69SBarry Smith 27560f6d62edSLisandro Dalcin if (reuse == MAT_REUSE_MATRIX) { 27579566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_REUSE_MATRIX, &b->A)); 27589566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_REUSE_MATRIX, &b->B)); 27590f6d62edSLisandro Dalcin } else { 27609566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->A)); 27619566063dSJacob Faibussowitsch PetscCall(MatDestroy(&b->B)); 27629566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(A)); 27639566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->A, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->A)); 27649566063dSJacob Faibussowitsch PetscCall(MatConvert_SeqBAIJ_SeqAIJ(a->B, MATSEQAIJ, MAT_INITIAL_MATRIX, &b->B)); 27659566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 27669566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 27670f6d62edSLisandro Dalcin } 27689566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 27699566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 27700f6d62edSLisandro Dalcin 2771511c6705SHong Zhang if (reuse == MAT_INPLACE_MATRIX) { 27729566063dSJacob Faibussowitsch PetscCall(MatHeaderReplace(A, &B)); 277362471d69SBarry Smith } else { 277462471d69SBarry Smith *newmat = B; 277562471d69SBarry Smith } 277662471d69SBarry Smith PetscFunctionReturn(0); 277762471d69SBarry Smith } 277862471d69SBarry Smith 27790bad9183SKris Buschelman /*MC 2780fafad747SKris Buschelman MATMPIBAIJ - MATMPIBAIJ = "mpibaij" - A matrix type to be used for distributed block sparse matrices. 27810bad9183SKris Buschelman 27820bad9183SKris Buschelman Options Database Keys: 27838c07d4e3SBarry Smith + -mat_type mpibaij - sets the matrix type to "mpibaij" during a call to MatSetFromOptions() 27848c07d4e3SBarry Smith . -mat_block_size <bs> - set the blocksize used to store the matrix 27856679dcc1SBarry Smith . -mat_baij_mult_version version - indicate the version of the matrix-vector product to use (0 often indicates using BLAS) 278667b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 27870bad9183SKris Buschelman 27880bad9183SKris Buschelman Level: beginner 27890cd7f59aSBarry Smith 27900cd7f59aSBarry Smith Notes: 27910cd7f59aSBarry Smith MatSetOptions(,MAT_STRUCTURE_ONLY,PETSC_TRUE) may be called for this matrix type. In this no 27920cd7f59aSBarry Smith space is allocated for the nonzero entries and any entries passed with MatSetValues() are ignored 27930bad9183SKris Buschelman 2794db781477SPatrick Sanan .seealso: `MatCreateBAIJ` 27950bad9183SKris Buschelman M*/ 27960bad9183SKris Buschelman 2797cc2e6a90SBarry Smith PETSC_INTERN PetscErrorCode MatConvert_MPIBAIJ_MPIBSTRM(Mat, MatType, MatReuse, Mat *); 2798c0cdd4a1SDahai Guo 27999371c9d4SSatish Balay PETSC_EXTERN PetscErrorCode MatCreate_MPIBAIJ(Mat B) { 2800273d9f13SBarry Smith Mat_MPIBAIJ *b; 280194ae4db5SBarry Smith PetscBool flg = PETSC_FALSE; 2802273d9f13SBarry Smith 2803273d9f13SBarry Smith PetscFunctionBegin; 28049566063dSJacob Faibussowitsch PetscCall(PetscNewLog(B, &b)); 280582502324SSatish Balay B->data = (void *)b; 280682502324SSatish Balay 28079566063dSJacob Faibussowitsch PetscCall(PetscMemcpy(B->ops, &MatOps_Values, sizeof(struct _MatOps))); 2808273d9f13SBarry Smith B->assembled = PETSC_FALSE; 2809273d9f13SBarry Smith 2810273d9f13SBarry Smith B->insertmode = NOT_SET_VALUES; 28119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)B), &b->rank)); 28129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)B), &b->size)); 2813273d9f13SBarry Smith 2814273d9f13SBarry Smith /* build local table of row and column ownerships */ 28159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(b->size + 1, &b->rangebs)); 2816273d9f13SBarry Smith 2817273d9f13SBarry Smith /* build cache for off array entries formed */ 28189566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)B), 1, &B->stash)); 281926fbe8dcSKarl Rupp 2820273d9f13SBarry Smith b->donotstash = PETSC_FALSE; 28210298fd71SBarry Smith b->colmap = NULL; 28220298fd71SBarry Smith b->garray = NULL; 2823273d9f13SBarry Smith b->roworiented = PETSC_TRUE; 2824273d9f13SBarry Smith 2825273d9f13SBarry Smith /* stuff used in block assembly */ 2826f4259b30SLisandro Dalcin b->barray = NULL; 2827273d9f13SBarry Smith 2828273d9f13SBarry Smith /* stuff used for matrix vector multiply */ 2829f4259b30SLisandro Dalcin b->lvec = NULL; 2830f4259b30SLisandro Dalcin b->Mvctx = NULL; 2831273d9f13SBarry Smith 2832273d9f13SBarry Smith /* stuff for MatGetRow() */ 2833f4259b30SLisandro Dalcin b->rowindices = NULL; 2834f4259b30SLisandro Dalcin b->rowvalues = NULL; 2835273d9f13SBarry Smith b->getrowactive = PETSC_FALSE; 2836273d9f13SBarry Smith 2837273d9f13SBarry Smith /* hash table stuff */ 2838f4259b30SLisandro Dalcin b->ht = NULL; 2839f4259b30SLisandro Dalcin b->hd = NULL; 2840273d9f13SBarry Smith b->ht_size = 0; 2841273d9f13SBarry Smith b->ht_flag = PETSC_FALSE; 2842273d9f13SBarry Smith b->ht_fact = 0; 2843273d9f13SBarry Smith b->ht_total_ct = 0; 2844273d9f13SBarry Smith b->ht_insert_ct = 0; 2845273d9f13SBarry Smith 28467dae84e0SHong Zhang /* stuff for MatCreateSubMatrices_MPIBAIJ_local() */ 28477a868f3eSHong Zhang b->ijonly = PETSC_FALSE; 28487a868f3eSHong Zhang 28499566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiadj_C", MatConvert_MPIBAIJ_MPIAdj)); 28509566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpiaij_C", MatConvert_MPIBAIJ_MPIAIJ)); 28519566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_mpisbaij_C", MatConvert_MPIBAIJ_MPISBAIJ)); 28527ea3e4caSstefano_zampini #if defined(PETSC_HAVE_HYPRE) 28539566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_hypre_C", MatConvert_AIJ_HYPRE)); 28547ea3e4caSstefano_zampini #endif 28559566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatStoreValues_C", MatStoreValues_MPIBAIJ)); 28569566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatRetrieveValues_C", MatRetrieveValues_MPIBAIJ)); 28579566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocation_C", MatMPIBAIJSetPreallocation_MPIBAIJ)); 28589566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatMPIBAIJSetPreallocationCSR_C", MatMPIBAIJSetPreallocationCSR_MPIBAIJ)); 28599566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatDiagonalScaleLocal_C", MatDiagonalScaleLocal_MPIBAIJ)); 28609566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatSetHashTableFactor_C", MatSetHashTableFactor_MPIBAIJ)); 28619566063dSJacob Faibussowitsch PetscCall(PetscObjectComposeFunction((PetscObject)B, "MatConvert_mpibaij_is_C", MatConvert_XAIJ_IS)); 28629566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)B, MATMPIBAIJ)); 286394ae4db5SBarry Smith 2864d0609cedSBarry Smith PetscOptionsBegin(PetscObjectComm((PetscObject)B), NULL, "Options for loading MPIBAIJ matrix 1", "Mat"); 28659566063dSJacob Faibussowitsch PetscCall(PetscOptionsName("-mat_use_hash_table", "Use hash table to save time in constructing matrix", "MatSetOption", &flg)); 286694ae4db5SBarry Smith if (flg) { 286794ae4db5SBarry Smith PetscReal fact = 1.39; 28689566063dSJacob Faibussowitsch PetscCall(MatSetOption(B, MAT_USE_HASH_TABLE, PETSC_TRUE)); 28699566063dSJacob Faibussowitsch PetscCall(PetscOptionsReal("-mat_use_hash_table", "Use hash table factor", "MatMPIBAIJSetHashTableFactor", fact, &fact, NULL)); 287094ae4db5SBarry Smith if (fact <= 1.0) fact = 1.39; 28719566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetHashTableFactor(B, fact)); 28729566063dSJacob Faibussowitsch PetscCall(PetscInfo(B, "Hash table Factor used %5.2g\n", (double)fact)); 287394ae4db5SBarry Smith } 2874d0609cedSBarry Smith PetscOptionsEnd(); 2875273d9f13SBarry Smith PetscFunctionReturn(0); 2876273d9f13SBarry Smith } 2877273d9f13SBarry Smith 2878209238afSKris Buschelman /*MC 2879002d173eSKris Buschelman MATBAIJ - MATBAIJ = "baij" - A matrix type to be used for block sparse matrices. 2880209238afSKris Buschelman 2881209238afSKris Buschelman This matrix type is identical to MATSEQBAIJ when constructed with a single process communicator, 2882209238afSKris Buschelman and MATMPIBAIJ otherwise. 2883209238afSKris Buschelman 2884209238afSKris Buschelman Options Database Keys: 2885209238afSKris Buschelman . -mat_type baij - sets the matrix type to "baij" during a call to MatSetFromOptions() 2886209238afSKris Buschelman 2887209238afSKris Buschelman Level: beginner 2888209238afSKris Buschelman 2889c2e3fba1SPatrick Sanan .seealso: `MatCreateBAIJ()`, `MATSEQBAIJ`, `MATMPIBAIJ`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 2890209238afSKris Buschelman M*/ 2891209238afSKris Buschelman 2892273d9f13SBarry Smith /*@C 2893aac34f13SBarry Smith MatMPIBAIJSetPreallocation - Allocates memory for a sparse parallel matrix in block AIJ format 2894273d9f13SBarry Smith (block compressed row). For good matrix assembly performance 2895273d9f13SBarry Smith the user should preallocate the matrix storage by setting the parameters 2896273d9f13SBarry Smith d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 2897273d9f13SBarry Smith performance can be increased by more than a factor of 50. 2898273d9f13SBarry Smith 2899273d9f13SBarry Smith Collective on Mat 2900273d9f13SBarry Smith 2901273d9f13SBarry Smith Input Parameters: 29021c4f3114SJed Brown + B - the matrix 2903bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2904bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 2905273d9f13SBarry Smith . d_nz - number of block nonzeros per block row in diagonal portion of local 2906273d9f13SBarry Smith submatrix (same for all local rows) 2907273d9f13SBarry Smith . d_nnz - array containing the number of block nonzeros in the various block rows 2908273d9f13SBarry Smith of the in diagonal portion of the local (possibly different for each block 29090298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry and 291095742e49SBarry Smith set it even if it is zero. 2911273d9f13SBarry Smith . o_nz - number of block nonzeros per block row in the off-diagonal portion of local 2912273d9f13SBarry Smith submatrix (same for all local rows). 2913273d9f13SBarry Smith - o_nnz - array containing the number of nonzeros in the various block rows of the 2914273d9f13SBarry Smith off-diagonal portion of the local submatrix (possibly different for 29150298fd71SBarry Smith each block row) or NULL. 2916273d9f13SBarry Smith 291749a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 2918273d9f13SBarry Smith 2919273d9f13SBarry Smith Options Database Keys: 29208c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 292167b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 2922273d9f13SBarry Smith 2923273d9f13SBarry Smith Notes: 2924273d9f13SBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 2925273d9f13SBarry Smith than it must be used on all processors that share the object for that argument. 2926273d9f13SBarry Smith 2927273d9f13SBarry Smith Storage Information: 2928273d9f13SBarry Smith For a square global matrix we define each processor's diagonal portion 2929273d9f13SBarry Smith to be its local rows and the corresponding columns (a square submatrix); 2930273d9f13SBarry Smith each processor's off-diagonal portion encompasses the remainder of the 2931273d9f13SBarry Smith local matrix (a rectangular submatrix). 2932273d9f13SBarry Smith 2933273d9f13SBarry Smith The user can specify preallocated storage for the diagonal part of 2934273d9f13SBarry Smith the local submatrix with either d_nz or d_nnz (not both). Set 29350298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 2936273d9f13SBarry Smith memory allocation. Likewise, specify preallocated storage for the 2937273d9f13SBarry Smith off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 2938273d9f13SBarry Smith 2939273d9f13SBarry Smith Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 2940273d9f13SBarry Smith the figure below we depict these three local rows and all columns (0-11). 2941273d9f13SBarry Smith 2942273d9f13SBarry Smith .vb 2943273d9f13SBarry Smith 0 1 2 3 4 5 6 7 8 9 10 11 2944a4b1a0f6SJed Brown -------------------------- 2945273d9f13SBarry Smith row 3 |o o o d d d o o o o o o 2946273d9f13SBarry Smith row 4 |o o o d d d o o o o o o 2947273d9f13SBarry Smith row 5 |o o o d d d o o o o o o 2948a4b1a0f6SJed Brown -------------------------- 2949273d9f13SBarry Smith .ve 2950273d9f13SBarry Smith 2951273d9f13SBarry Smith Thus, any entries in the d locations are stored in the d (diagonal) 2952273d9f13SBarry Smith submatrix, and any entries in the o locations are stored in the 2953273d9f13SBarry Smith o (off-diagonal) submatrix. Note that the d and the o submatrices are 2954273d9f13SBarry Smith stored simply in the MATSEQBAIJ format for compressed row storage. 2955273d9f13SBarry Smith 2956273d9f13SBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 2957273d9f13SBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 2958273d9f13SBarry Smith In general, for PDE problems in which most nonzeros are near the diagonal, 2959273d9f13SBarry Smith one expects d_nz >> o_nz. For large problems you MUST preallocate memory 2960273d9f13SBarry Smith or you will get TERRIBLE performance; see the users' manual chapter on 2961273d9f13SBarry Smith matrices. 2962273d9f13SBarry Smith 2963aa95bbe8SBarry Smith You can call MatGetInfo() to get information on how effective the preallocation was; 2964aa95bbe8SBarry Smith for example the fields mallocs,nz_allocated,nz_used,nz_unneeded; 2965aa95bbe8SBarry Smith You can also run with the option -info and look for messages with the string 2966aa95bbe8SBarry Smith malloc in them to see if additional memory allocation was needed. 2967aa95bbe8SBarry Smith 2968273d9f13SBarry Smith Level: intermediate 2969273d9f13SBarry Smith 2970db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocationCSR()`, `PetscSplitOwnership()` 2971273d9f13SBarry Smith @*/ 29729371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetPreallocation(Mat B, PetscInt bs, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[]) { 2973273d9f13SBarry Smith PetscFunctionBegin; 29746ba663aaSJed Brown PetscValidHeaderSpecific(B, MAT_CLASSID, 1); 29756ba663aaSJed Brown PetscValidType(B, 1); 29766ba663aaSJed Brown PetscValidLogicalCollectiveInt(B, bs, 2); 2977cac4c232SBarry Smith PetscTryMethod(B, "MatMPIBAIJSetPreallocation_C", (Mat, PetscInt, PetscInt, const PetscInt[], PetscInt, const PetscInt[]), (B, bs, d_nz, d_nnz, o_nz, o_nnz)); 2978273d9f13SBarry Smith PetscFunctionReturn(0); 2979273d9f13SBarry Smith } 2980273d9f13SBarry Smith 298179bdfe76SSatish Balay /*@C 298269b1f4b7SBarry Smith MatCreateBAIJ - Creates a sparse parallel matrix in block AIJ format 298379bdfe76SSatish Balay (block compressed row). For good matrix assembly performance 298479bdfe76SSatish Balay the user should preallocate the matrix storage by setting the parameters 298579bdfe76SSatish Balay d_nz (or d_nnz) and o_nz (or o_nnz). By setting these parameters accurately, 298679bdfe76SSatish Balay performance can be increased by more than a factor of 50. 298779bdfe76SSatish Balay 2988d083f849SBarry Smith Collective 2989db81eaa0SLois Curfman McInnes 299079bdfe76SSatish Balay Input Parameters: 2991db81eaa0SLois Curfman McInnes + comm - MPI communicator 2992bb7ae925SBarry Smith . bs - size of block, the blocks are ALWAYS square. One can use MatSetBlockSizes() to set a different row and column blocksize but the row 2993bb7ae925SBarry Smith blocksize always defines the size of the blocks. The column blocksize sets the blocksize of the vectors obtained with MatCreateVecs() 299479bdfe76SSatish Balay . m - number of local rows (or PETSC_DECIDE to have calculated if M is given) 299592e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 299692e8d321SLois Curfman McInnes y vector for the matrix-vector product y = Ax. 299792e8d321SLois Curfman McInnes . n - number of local columns (or PETSC_DECIDE to have calculated if N is given) 299892e8d321SLois Curfman McInnes This value should be the same as the local size used in creating the 299992e8d321SLois Curfman McInnes x vector for the matrix-vector product y = Ax. 3000be79a94dSBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3001be79a94dSBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 300247a75d0bSBarry Smith . d_nz - number of nonzero blocks per block row in diagonal portion of local 300379bdfe76SSatish Balay submatrix (same for all local rows) 300447a75d0bSBarry Smith . d_nnz - array containing the number of nonzero blocks in the various block rows 300592e8d321SLois Curfman McInnes of the in diagonal portion of the local (possibly different for each block 30060298fd71SBarry Smith row) or NULL. If you plan to factor the matrix you must leave room for the diagonal entry 300795742e49SBarry Smith and set it even if it is zero. 300847a75d0bSBarry Smith . o_nz - number of nonzero blocks per block row in the off-diagonal portion of local 300979bdfe76SSatish Balay submatrix (same for all local rows). 301047a75d0bSBarry Smith - o_nnz - array containing the number of nonzero blocks in the various block rows of the 301192e8d321SLois Curfman McInnes off-diagonal portion of the local submatrix (possibly different for 30120298fd71SBarry Smith each block row) or NULL. 301379bdfe76SSatish Balay 301479bdfe76SSatish Balay Output Parameter: 301579bdfe76SSatish Balay . A - the matrix 301679bdfe76SSatish Balay 3017db81eaa0SLois Curfman McInnes Options Database Keys: 30188c07d4e3SBarry Smith + -mat_block_size - size of the blocks to use 301967b8a455SSatish Balay - -mat_use_hash_table <fact> - set hash table factor 30203ffaccefSLois Curfman McInnes 3021175b88e8SBarry Smith It is recommended that one use the MatCreate(), MatSetType() and/or MatSetFromOptions(), 3022f6f02116SRichard Tran Mills MatXXXXSetPreallocation() paradigm instead of this routine directly. 3023175b88e8SBarry Smith [MatXXXXSetPreallocation() is, for example, MatSeqAIJSetPreallocation] 3024175b88e8SBarry Smith 3025b259b22eSLois Curfman McInnes Notes: 302649a6f317SBarry Smith If the *_nnz parameter is given then the *_nz parameter is ignored 302749a6f317SBarry Smith 302847a75d0bSBarry Smith A nonzero block is any block that as 1 or more nonzeros in it 302947a75d0bSBarry Smith 303079bdfe76SSatish Balay The user MUST specify either the local or global matrix dimensions 303179bdfe76SSatish Balay (possibly both). 303279bdfe76SSatish Balay 3033be79a94dSBarry Smith If PETSC_DECIDE or PETSC_DETERMINE is used for a particular argument on one processor 3034be79a94dSBarry Smith than it must be used on all processors that share the object for that argument. 3035be79a94dSBarry Smith 303679bdfe76SSatish Balay Storage Information: 303779bdfe76SSatish Balay For a square global matrix we define each processor's diagonal portion 303879bdfe76SSatish Balay to be its local rows and the corresponding columns (a square submatrix); 303979bdfe76SSatish Balay each processor's off-diagonal portion encompasses the remainder of the 304079bdfe76SSatish Balay local matrix (a rectangular submatrix). 304179bdfe76SSatish Balay 304279bdfe76SSatish Balay The user can specify preallocated storage for the diagonal part of 304379bdfe76SSatish Balay the local submatrix with either d_nz or d_nnz (not both). Set 30440298fd71SBarry Smith d_nz=PETSC_DEFAULT and d_nnz=NULL for PETSc to control dynamic 304579bdfe76SSatish Balay memory allocation. Likewise, specify preallocated storage for the 304679bdfe76SSatish Balay off-diagonal part of the local submatrix with o_nz or o_nnz (not both). 304779bdfe76SSatish Balay 304879bdfe76SSatish Balay Consider a processor that owns rows 3, 4 and 5 of a parallel matrix. In 304979bdfe76SSatish Balay the figure below we depict these three local rows and all columns (0-11). 305079bdfe76SSatish Balay 3051db81eaa0SLois Curfman McInnes .vb 3052db81eaa0SLois Curfman McInnes 0 1 2 3 4 5 6 7 8 9 10 11 3053a4b1a0f6SJed Brown -------------------------- 3054db81eaa0SLois Curfman McInnes row 3 |o o o d d d o o o o o o 3055db81eaa0SLois Curfman McInnes row 4 |o o o d d d o o o o o o 3056db81eaa0SLois Curfman McInnes row 5 |o o o d d d o o o o o o 3057a4b1a0f6SJed Brown -------------------------- 3058db81eaa0SLois Curfman McInnes .ve 305979bdfe76SSatish Balay 306079bdfe76SSatish Balay Thus, any entries in the d locations are stored in the d (diagonal) 306179bdfe76SSatish Balay submatrix, and any entries in the o locations are stored in the 306279bdfe76SSatish Balay o (off-diagonal) submatrix. Note that the d and the o submatrices are 306357b952d6SSatish Balay stored simply in the MATSEQBAIJ format for compressed row storage. 306479bdfe76SSatish Balay 3065d64ed03dSBarry Smith Now d_nz should indicate the number of block nonzeros per row in the d matrix, 3066d64ed03dSBarry Smith and o_nz should indicate the number of block nonzeros per row in the o matrix. 306779bdfe76SSatish Balay In general, for PDE problems in which most nonzeros are near the diagonal, 306892e8d321SLois Curfman McInnes one expects d_nz >> o_nz. For large problems you MUST preallocate memory 306992e8d321SLois Curfman McInnes or you will get TERRIBLE performance; see the users' manual chapter on 30706da5968aSLois Curfman McInnes matrices. 307179bdfe76SSatish Balay 3072027ccd11SLois Curfman McInnes Level: intermediate 3073027ccd11SLois Curfman McInnes 3074db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqBAIJ()`, `MatSetValues()`, `MatCreateBAIJ()`, `MatMPIBAIJSetPreallocation()`, `MatMPIBAIJSetPreallocationCSR()` 307579bdfe76SSatish Balay @*/ 30769371c9d4SSatish Balay PetscErrorCode MatCreateBAIJ(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, PetscInt d_nz, const PetscInt d_nnz[], PetscInt o_nz, const PetscInt o_nnz[], Mat *A) { 3077b24ad042SBarry Smith PetscMPIInt size; 307879bdfe76SSatish Balay 3079d64ed03dSBarry Smith PetscFunctionBegin; 30809566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, A)); 30819566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*A, m, n, M, N)); 30829566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3083273d9f13SBarry Smith if (size > 1) { 30849566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATMPIBAIJ)); 30859566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*A, bs, d_nz, d_nnz, o_nz, o_nnz)); 3086273d9f13SBarry Smith } else { 30879566063dSJacob Faibussowitsch PetscCall(MatSetType(*A, MATSEQBAIJ)); 30889566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*A, bs, d_nz, d_nnz)); 30893914022bSBarry Smith } 30903a40ed3dSBarry Smith PetscFunctionReturn(0); 309179bdfe76SSatish Balay } 3092026e39d0SSatish Balay 30939371c9d4SSatish Balay static PetscErrorCode MatDuplicate_MPIBAIJ(Mat matin, MatDuplicateOption cpvalues, Mat *newmat) { 30940ac07820SSatish Balay Mat mat; 30950ac07820SSatish Balay Mat_MPIBAIJ *a, *oldmat = (Mat_MPIBAIJ *)matin->data; 3096b24ad042SBarry Smith PetscInt len = 0; 30970ac07820SSatish Balay 3098d64ed03dSBarry Smith PetscFunctionBegin; 3099f4259b30SLisandro Dalcin *newmat = NULL; 31009566063dSJacob Faibussowitsch PetscCall(MatCreate(PetscObjectComm((PetscObject)matin), &mat)); 31019566063dSJacob Faibussowitsch PetscCall(MatSetSizes(mat, matin->rmap->n, matin->cmap->n, matin->rmap->N, matin->cmap->N)); 31029566063dSJacob Faibussowitsch PetscCall(MatSetType(mat, ((PetscObject)matin)->type_name)); 31037fff6886SHong Zhang 3104d5f3da31SBarry Smith mat->factortype = matin->factortype; 3105273d9f13SBarry Smith mat->preallocated = PETSC_TRUE; 31060ac07820SSatish Balay mat->assembled = PETSC_TRUE; 31077fff6886SHong Zhang mat->insertmode = NOT_SET_VALUES; 31087fff6886SHong Zhang 3109273d9f13SBarry Smith a = (Mat_MPIBAIJ *)mat->data; 3110d0f46423SBarry Smith mat->rmap->bs = matin->rmap->bs; 31110ac07820SSatish Balay a->bs2 = oldmat->bs2; 31120ac07820SSatish Balay a->mbs = oldmat->mbs; 31130ac07820SSatish Balay a->nbs = oldmat->nbs; 31140ac07820SSatish Balay a->Mbs = oldmat->Mbs; 31150ac07820SSatish Balay a->Nbs = oldmat->Nbs; 31160ac07820SSatish Balay 31179566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->rmap, &mat->rmap)); 31189566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(matin->cmap, &mat->cmap)); 3119899cda47SBarry Smith 31200ac07820SSatish Balay a->size = oldmat->size; 31210ac07820SSatish Balay a->rank = oldmat->rank; 3122aef5e8e0SSatish Balay a->donotstash = oldmat->donotstash; 3123aef5e8e0SSatish Balay a->roworiented = oldmat->roworiented; 3124f4259b30SLisandro Dalcin a->rowindices = NULL; 3125f4259b30SLisandro Dalcin a->rowvalues = NULL; 31260ac07820SSatish Balay a->getrowactive = PETSC_FALSE; 3127f4259b30SLisandro Dalcin a->barray = NULL; 3128899cda47SBarry Smith a->rstartbs = oldmat->rstartbs; 3129899cda47SBarry Smith a->rendbs = oldmat->rendbs; 3130899cda47SBarry Smith a->cstartbs = oldmat->cstartbs; 3131899cda47SBarry Smith a->cendbs = oldmat->cendbs; 31320ac07820SSatish Balay 3133133cdb44SSatish Balay /* hash table stuff */ 3134f4259b30SLisandro Dalcin a->ht = NULL; 3135f4259b30SLisandro Dalcin a->hd = NULL; 3136133cdb44SSatish Balay a->ht_size = 0; 3137133cdb44SSatish Balay a->ht_flag = oldmat->ht_flag; 313825fdafccSSatish Balay a->ht_fact = oldmat->ht_fact; 3139133cdb44SSatish Balay a->ht_total_ct = 0; 3140133cdb44SSatish Balay a->ht_insert_ct = 0; 3141133cdb44SSatish Balay 31429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->rangebs, oldmat->rangebs, a->size + 1)); 31430ac07820SSatish Balay if (oldmat->colmap) { 3144aa482453SBarry Smith #if defined(PETSC_USE_CTABLE) 31459566063dSJacob Faibussowitsch PetscCall(PetscTableCreateCopy(oldmat->colmap, &a->colmap)); 314648e59246SSatish Balay #else 31479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(a->Nbs, &a->colmap)); 31489566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat, (a->Nbs) * sizeof(PetscInt))); 31499566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->colmap, oldmat->colmap, a->Nbs)); 315048e59246SSatish Balay #endif 3151f4259b30SLisandro Dalcin } else a->colmap = NULL; 31524beb1cfeSHong Zhang 31530ac07820SSatish Balay if (oldmat->garray && (len = ((Mat_SeqBAIJ *)(oldmat->B->data))->nbs)) { 31549566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(len, &a->garray)); 31559566063dSJacob Faibussowitsch PetscCall(PetscLogObjectMemory((PetscObject)mat, len * sizeof(PetscInt))); 31569566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(a->garray, oldmat->garray, len)); 3157f4259b30SLisandro Dalcin } else a->garray = NULL; 31580ac07820SSatish Balay 31599566063dSJacob Faibussowitsch PetscCall(MatStashCreate_Private(PetscObjectComm((PetscObject)matin), matin->rmap->bs, &mat->bstash)); 31609566063dSJacob Faibussowitsch PetscCall(VecDuplicate(oldmat->lvec, &a->lvec)); 31619566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->lvec)); 31629566063dSJacob Faibussowitsch PetscCall(VecScatterCopy(oldmat->Mvctx, &a->Mvctx)); 31639566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->Mvctx)); 31647fff6886SHong Zhang 31659566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->A, cpvalues, &a->A)); 31669566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->A)); 31679566063dSJacob Faibussowitsch PetscCall(MatDuplicate(oldmat->B, cpvalues, &a->B)); 31689566063dSJacob Faibussowitsch PetscCall(PetscLogObjectParent((PetscObject)mat, (PetscObject)a->B)); 31699566063dSJacob Faibussowitsch PetscCall(PetscFunctionListDuplicate(((PetscObject)matin)->qlist, &((PetscObject)mat)->qlist)); 31700ac07820SSatish Balay *newmat = mat; 31713a40ed3dSBarry Smith PetscFunctionReturn(0); 31720ac07820SSatish Balay } 317357b952d6SSatish Balay 3174618cc2edSLisandro Dalcin /* Used for both MPIBAIJ and MPISBAIJ matrices */ 31759371c9d4SSatish Balay PetscErrorCode MatLoad_MPIBAIJ_Binary(Mat mat, PetscViewer viewer) { 3176b51a4376SLisandro Dalcin PetscInt header[4], M, N, nz, bs, m, n, mbs, nbs, rows, cols, sum, i, j, k; 3177b51a4376SLisandro Dalcin PetscInt *rowidxs, *colidxs, rs, cs, ce; 3178b51a4376SLisandro Dalcin PetscScalar *matvals; 3179b51a4376SLisandro Dalcin 3180b51a4376SLisandro Dalcin PetscFunctionBegin; 31819566063dSJacob Faibussowitsch PetscCall(PetscViewerSetUp(viewer)); 3182b51a4376SLisandro Dalcin 3183b51a4376SLisandro Dalcin /* read in matrix header */ 31849566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryRead(viewer, header, 4, NULL, PETSC_INT)); 31855f80ce2aSJacob Faibussowitsch PetscCheck(header[0] == MAT_FILE_CLASSID, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Not a matrix object in file"); 31869371c9d4SSatish Balay M = header[1]; 31879371c9d4SSatish Balay N = header[2]; 31889371c9d4SSatish Balay nz = header[3]; 31895f80ce2aSJacob Faibussowitsch PetscCheck(M >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix row size (%" PetscInt_FMT ") in file is negative", M); 31905f80ce2aSJacob Faibussowitsch PetscCheck(N >= 0, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Matrix column size (%" PetscInt_FMT ") in file is negative", N); 31915f80ce2aSJacob Faibussowitsch PetscCheck(nz >= 0, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix stored in special format on disk, cannot load as MPIBAIJ"); 3192b51a4376SLisandro Dalcin 3193b51a4376SLisandro Dalcin /* set block sizes from the viewer's .info file */ 31949566063dSJacob Faibussowitsch PetscCall(MatLoad_Binary_BlockSizes(mat, viewer)); 3195618cc2edSLisandro Dalcin /* set local sizes if not set already */ 3196618cc2edSLisandro Dalcin if (mat->rmap->n < 0 && M == N) mat->rmap->n = mat->cmap->n; 3197618cc2edSLisandro Dalcin if (mat->cmap->n < 0 && M == N) mat->cmap->n = mat->rmap->n; 3198b51a4376SLisandro Dalcin /* set global sizes if not set already */ 3199b51a4376SLisandro Dalcin if (mat->rmap->N < 0) mat->rmap->N = M; 3200b51a4376SLisandro Dalcin if (mat->cmap->N < 0) mat->cmap->N = N; 32019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->rmap)); 32029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(mat->cmap)); 3203b51a4376SLisandro Dalcin 3204b51a4376SLisandro Dalcin /* check if the matrix sizes are correct */ 32059566063dSJacob Faibussowitsch PetscCall(MatGetSize(mat, &rows, &cols)); 32065f80ce2aSJacob Faibussowitsch PetscCheck(M == rows && N == cols, PETSC_COMM_SELF, PETSC_ERR_FILE_UNEXPECTED, "Matrix in file of different sizes (%" PetscInt_FMT ", %" PetscInt_FMT ") than the input matrix (%" PetscInt_FMT ", %" PetscInt_FMT ")", M, N, rows, cols); 32079566063dSJacob Faibussowitsch PetscCall(MatGetBlockSize(mat, &bs)); 32089566063dSJacob Faibussowitsch PetscCall(MatGetLocalSize(mat, &m, &n)); 32099566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->rmap, &rs, NULL)); 32109566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(mat->cmap, &cs, &ce)); 32119371c9d4SSatish Balay mbs = m / bs; 32129371c9d4SSatish Balay nbs = n / bs; 3213b51a4376SLisandro Dalcin 3214b51a4376SLisandro Dalcin /* read in row lengths and build row indices */ 32159566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(m + 1, &rowidxs)); 32169566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, rowidxs + 1, m, PETSC_DECIDE, M, PETSC_INT)); 32179371c9d4SSatish Balay rowidxs[0] = 0; 32189371c9d4SSatish Balay for (i = 0; i < m; i++) rowidxs[i + 1] += rowidxs[i]; 32191c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(&rowidxs[m], &sum, 1, MPIU_INT, MPI_SUM, PetscObjectComm((PetscObject)viewer))); 32205f80ce2aSJacob Faibussowitsch PetscCheck(sum == nz, PetscObjectComm((PetscObject)viewer), PETSC_ERR_FILE_UNEXPECTED, "Inconsistent matrix data in file: nonzeros = %" PetscInt_FMT ", sum-row-lengths = %" PetscInt_FMT, nz, sum); 3221b51a4376SLisandro Dalcin 3222b51a4376SLisandro Dalcin /* read in column indices and matrix values */ 32239566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(rowidxs[m], &colidxs, rowidxs[m], &matvals)); 32249566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, colidxs, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_INT)); 32259566063dSJacob Faibussowitsch PetscCall(PetscViewerBinaryReadAll(viewer, matvals, rowidxs[m], PETSC_DETERMINE, PETSC_DETERMINE, PETSC_SCALAR)); 3226b51a4376SLisandro Dalcin 3227b51a4376SLisandro Dalcin { /* preallocate matrix storage */ 3228b51a4376SLisandro Dalcin PetscBT bt; /* helper bit set to count diagonal nonzeros */ 3229b51a4376SLisandro Dalcin PetscHSetI ht; /* helper hash set to count off-diagonal nonzeros */ 3230618cc2edSLisandro Dalcin PetscBool sbaij, done; 3231b51a4376SLisandro Dalcin PetscInt *d_nnz, *o_nnz; 3232b51a4376SLisandro Dalcin 32339566063dSJacob Faibussowitsch PetscCall(PetscBTCreate(nbs, &bt)); 32349566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&ht)); 32359566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(mbs, &d_nnz, mbs, &o_nnz)); 32369566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)mat, MATMPISBAIJ, &sbaij)); 3237b51a4376SLisandro Dalcin for (i = 0; i < mbs; i++) { 32389566063dSJacob Faibussowitsch PetscCall(PetscBTMemzero(nbs, bt)); 32399566063dSJacob Faibussowitsch PetscCall(PetscHSetIClear(ht)); 3240618cc2edSLisandro Dalcin for (k = 0; k < bs; k++) { 3241618cc2edSLisandro Dalcin PetscInt row = bs * i + k; 3242618cc2edSLisandro Dalcin for (j = rowidxs[row]; j < rowidxs[row + 1]; j++) { 3243618cc2edSLisandro Dalcin PetscInt col = colidxs[j]; 3244618cc2edSLisandro Dalcin if (!sbaij || col >= row) { 3245618cc2edSLisandro Dalcin if (col >= cs && col < ce) { 3246618cc2edSLisandro Dalcin if (!PetscBTLookupSet(bt, (col - cs) / bs)) d_nnz[i]++; 3247b51a4376SLisandro Dalcin } else { 32489566063dSJacob Faibussowitsch PetscCall(PetscHSetIQueryAdd(ht, col / bs, &done)); 3249b51a4376SLisandro Dalcin if (done) o_nnz[i]++; 3250b51a4376SLisandro Dalcin } 3251b51a4376SLisandro Dalcin } 3252618cc2edSLisandro Dalcin } 3253618cc2edSLisandro Dalcin } 3254618cc2edSLisandro Dalcin } 32559566063dSJacob Faibussowitsch PetscCall(PetscBTDestroy(&bt)); 32569566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&ht)); 32579566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 32589566063dSJacob Faibussowitsch PetscCall(MatMPISBAIJSetPreallocation(mat, bs, 0, d_nnz, 0, o_nnz)); 32599566063dSJacob Faibussowitsch PetscCall(PetscFree2(d_nnz, o_nnz)); 3260b51a4376SLisandro Dalcin } 3261b51a4376SLisandro Dalcin 3262b51a4376SLisandro Dalcin /* store matrix values */ 3263b51a4376SLisandro Dalcin for (i = 0; i < m; i++) { 3264b51a4376SLisandro Dalcin PetscInt row = rs + i, s = rowidxs[i], e = rowidxs[i + 1]; 32659566063dSJacob Faibussowitsch PetscCall((*mat->ops->setvalues)(mat, 1, &row, e - s, colidxs + s, matvals + s, INSERT_VALUES)); 3266b51a4376SLisandro Dalcin } 3267b51a4376SLisandro Dalcin 32689566063dSJacob Faibussowitsch PetscCall(PetscFree(rowidxs)); 32699566063dSJacob Faibussowitsch PetscCall(PetscFree2(colidxs, matvals)); 32709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(mat, MAT_FINAL_ASSEMBLY)); 32719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(mat, MAT_FINAL_ASSEMBLY)); 3272b51a4376SLisandro Dalcin PetscFunctionReturn(0); 3273b51a4376SLisandro Dalcin } 3274b51a4376SLisandro Dalcin 32759371c9d4SSatish Balay PetscErrorCode MatLoad_MPIBAIJ(Mat mat, PetscViewer viewer) { 32767f489da9SVaclav Hapla PetscBool isbinary; 32774683f7a4SShri Abhyankar 32784683f7a4SShri Abhyankar PetscFunctionBegin; 32799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERBINARY, &isbinary)); 32805f80ce2aSJacob Faibussowitsch PetscCheck(isbinary, PetscObjectComm((PetscObject)viewer), PETSC_ERR_SUP, "Viewer type %s not yet supported for reading %s matrices", ((PetscObject)viewer)->type_name, ((PetscObject)mat)->type_name); 32819566063dSJacob Faibussowitsch PetscCall(MatLoad_MPIBAIJ_Binary(mat, viewer)); 32824683f7a4SShri Abhyankar PetscFunctionReturn(0); 32834683f7a4SShri Abhyankar } 32844683f7a4SShri Abhyankar 3285133cdb44SSatish Balay /*@ 3286133cdb44SSatish Balay MatMPIBAIJSetHashTableFactor - Sets the factor required to compute the size of the HashTable. 3287133cdb44SSatish Balay 3288133cdb44SSatish Balay Input Parameters: 3289a2b725a8SWilliam Gropp + mat - the matrix 3290a2b725a8SWilliam Gropp - fact - factor 3291133cdb44SSatish Balay 3292c5eb9154SBarry Smith Not Collective, each process can use a different factor 3293fee21e36SBarry Smith 32948c890885SBarry Smith Level: advanced 32958c890885SBarry Smith 3296133cdb44SSatish Balay Notes: 32978c07d4e3SBarry Smith This can also be set by the command line option: -mat_use_hash_table <fact> 3298133cdb44SSatish Balay 3299db781477SPatrick Sanan .seealso: `MatSetOption()` 3300133cdb44SSatish Balay @*/ 33019371c9d4SSatish Balay PetscErrorCode MatMPIBAIJSetHashTableFactor(Mat mat, PetscReal fact) { 33025bf65638SKris Buschelman PetscFunctionBegin; 3303cac4c232SBarry Smith PetscTryMethod(mat, "MatSetHashTableFactor_C", (Mat, PetscReal), (mat, fact)); 33045bf65638SKris Buschelman PetscFunctionReturn(0); 33055bf65638SKris Buschelman } 33065bf65638SKris Buschelman 33079371c9d4SSatish Balay PetscErrorCode MatSetHashTableFactor_MPIBAIJ(Mat mat, PetscReal fact) { 330825fdafccSSatish Balay Mat_MPIBAIJ *baij; 3309133cdb44SSatish Balay 3310133cdb44SSatish Balay PetscFunctionBegin; 3311133cdb44SSatish Balay baij = (Mat_MPIBAIJ *)mat->data; 3312133cdb44SSatish Balay baij->ht_fact = fact; 3313133cdb44SSatish Balay PetscFunctionReturn(0); 3314133cdb44SSatish Balay } 3315f2a5309cSSatish Balay 33169371c9d4SSatish Balay PetscErrorCode MatMPIBAIJGetSeqBAIJ(Mat A, Mat *Ad, Mat *Ao, const PetscInt *colmap[]) { 3317f2a5309cSSatish Balay Mat_MPIBAIJ *a = (Mat_MPIBAIJ *)A->data; 3318ab4d48faSStefano Zampini PetscBool flg; 33195fd66863SKarl Rupp 3320f2a5309cSSatish Balay PetscFunctionBegin; 33219566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)A, MATMPIBAIJ, &flg)); 33225f80ce2aSJacob Faibussowitsch PetscCheck(flg, PetscObjectComm((PetscObject)A), PETSC_ERR_SUP, "This function requires a MATMPIBAIJ matrix as input"); 332321e72a00SBarry Smith if (Ad) *Ad = a->A; 332421e72a00SBarry Smith if (Ao) *Ao = a->B; 332521e72a00SBarry Smith if (colmap) *colmap = a->garray; 3326f2a5309cSSatish Balay PetscFunctionReturn(0); 3327f2a5309cSSatish Balay } 332885535b8eSBarry Smith 332985535b8eSBarry Smith /* 333085535b8eSBarry Smith Special version for direct calls from Fortran (to eliminate two function call overheads 333185535b8eSBarry Smith */ 333285535b8eSBarry Smith #if defined(PETSC_HAVE_FORTRAN_CAPS) 333385535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ MATMPIBAIJSETVALUESBLOCKED 333485535b8eSBarry Smith #elif !defined(PETSC_HAVE_FORTRAN_UNDERSCORE) 333585535b8eSBarry Smith #define matmpibaijsetvaluesblocked_ matmpibaijsetvaluesblocked 333685535b8eSBarry Smith #endif 333785535b8eSBarry Smith 333885535b8eSBarry Smith /*@C 333985535b8eSBarry Smith MatMPIBAIJSetValuesBlocked - Direct Fortran call to replace call to MatSetValuesBlocked() 334085535b8eSBarry Smith 334185535b8eSBarry Smith Collective on Mat 334285535b8eSBarry Smith 334385535b8eSBarry Smith Input Parameters: 334485535b8eSBarry Smith + mat - the matrix 334585535b8eSBarry Smith . min - number of input rows 334685535b8eSBarry Smith . im - input rows 334785535b8eSBarry Smith . nin - number of input columns 334885535b8eSBarry Smith . in - input columns 334985535b8eSBarry Smith . v - numerical values input 335085535b8eSBarry Smith - addvin - INSERT_VALUES or ADD_VALUES 335185535b8eSBarry Smith 335295452b02SPatrick Sanan Notes: 335395452b02SPatrick Sanan This has a complete copy of MatSetValuesBlocked_MPIBAIJ() which is terrible code un-reuse. 335485535b8eSBarry Smith 335585535b8eSBarry Smith Level: advanced 335685535b8eSBarry Smith 3357db781477SPatrick Sanan .seealso: `MatSetValuesBlocked()` 335885535b8eSBarry Smith @*/ 33599371c9d4SSatish Balay PetscErrorCode matmpibaijsetvaluesblocked_(Mat *matin, PetscInt *min, const PetscInt im[], PetscInt *nin, const PetscInt in[], const MatScalar v[], InsertMode *addvin) { 336085535b8eSBarry Smith /* convert input arguments to C version */ 336185535b8eSBarry Smith Mat mat = *matin; 336285535b8eSBarry Smith PetscInt m = *min, n = *nin; 336385535b8eSBarry Smith InsertMode addv = *addvin; 336485535b8eSBarry Smith 336585535b8eSBarry Smith Mat_MPIBAIJ *baij = (Mat_MPIBAIJ *)mat->data; 336685535b8eSBarry Smith const MatScalar *value; 336785535b8eSBarry Smith MatScalar *barray = baij->barray; 3368ace3abfcSBarry Smith PetscBool roworiented = baij->roworiented; 336985535b8eSBarry Smith PetscInt i, j, ii, jj, row, col, rstart = baij->rstartbs; 337085535b8eSBarry Smith PetscInt rend = baij->rendbs, cstart = baij->cstartbs, stepval; 3371d0f46423SBarry Smith PetscInt cend = baij->cendbs, bs = mat->rmap->bs, bs2 = baij->bs2; 337285535b8eSBarry Smith 337385535b8eSBarry Smith PetscFunctionBegin; 337485535b8eSBarry Smith /* tasks normally handled by MatSetValuesBlocked() */ 337526fbe8dcSKarl Rupp if (mat->insertmode == NOT_SET_VALUES) mat->insertmode = addv; 33765f80ce2aSJacob Faibussowitsch else PetscCheck(mat->insertmode == addv, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Cannot mix add values and insert values"); 33775f80ce2aSJacob Faibussowitsch PetscCheck(!mat->factortype, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Not for factored matrix"); 337885535b8eSBarry Smith if (mat->assembled) { 337985535b8eSBarry Smith mat->was_assembled = PETSC_TRUE; 338085535b8eSBarry Smith mat->assembled = PETSC_FALSE; 338185535b8eSBarry Smith } 33829566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(MAT_SetValues, mat, 0, 0, 0)); 338385535b8eSBarry Smith 338485535b8eSBarry Smith if (!barray) { 33859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(bs2, &barray)); 338685535b8eSBarry Smith baij->barray = barray; 338785535b8eSBarry Smith } 338885535b8eSBarry Smith 338926fbe8dcSKarl Rupp if (roworiented) stepval = (n - 1) * bs; 339026fbe8dcSKarl Rupp else stepval = (m - 1) * bs; 339126fbe8dcSKarl Rupp 339285535b8eSBarry Smith for (i = 0; i < m; i++) { 339385535b8eSBarry Smith if (im[i] < 0) continue; 33946bdcaf15SBarry Smith PetscCheck(im[i] < baij->Mbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Row too large, row %" PetscInt_FMT " max %" PetscInt_FMT, im[i], baij->Mbs - 1); 339585535b8eSBarry Smith if (im[i] >= rstart && im[i] < rend) { 339685535b8eSBarry Smith row = im[i] - rstart; 339785535b8eSBarry Smith for (j = 0; j < n; j++) { 339885535b8eSBarry Smith /* If NumCol = 1 then a copy is not required */ 339985535b8eSBarry Smith if ((roworiented) && (n == 1)) { 340085535b8eSBarry Smith barray = (MatScalar *)v + i * bs2; 340185535b8eSBarry Smith } else if ((!roworiented) && (m == 1)) { 340285535b8eSBarry Smith barray = (MatScalar *)v + j * bs2; 340385535b8eSBarry Smith } else { /* Here a copy is required */ 340485535b8eSBarry Smith if (roworiented) { 340585535b8eSBarry Smith value = v + i * (stepval + bs) * bs + j * bs; 340685535b8eSBarry Smith } else { 340785535b8eSBarry Smith value = v + j * (stepval + bs) * bs + i * bs; 340885535b8eSBarry Smith } 340985535b8eSBarry Smith for (ii = 0; ii < bs; ii++, value += stepval) { 34109371c9d4SSatish Balay for (jj = 0; jj < bs; jj++) { *barray++ = *value++; } 341185535b8eSBarry Smith } 341285535b8eSBarry Smith barray -= bs2; 341385535b8eSBarry Smith } 341485535b8eSBarry Smith 341585535b8eSBarry Smith if (in[j] >= cstart && in[j] < cend) { 341685535b8eSBarry Smith col = in[j] - cstart; 34179566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->A, row, col, barray, addv, im[i], in[j])); 3418f7d195e4SLawrence Mitchell } else if (in[j] < 0) { 3419f7d195e4SLawrence Mitchell continue; 3420f7d195e4SLawrence Mitchell } else { 3421f7d195e4SLawrence Mitchell PetscCheck(in[j] < baij->Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Column too large, col %" PetscInt_FMT " max %" PetscInt_FMT, in[j], baij->Nbs - 1); 342285535b8eSBarry Smith if (mat->was_assembled) { 3423*48a46eb9SPierre Jolivet if (!baij->colmap) PetscCall(MatCreateColmap_MPIBAIJ_Private(mat)); 342485535b8eSBarry Smith 342585535b8eSBarry Smith #if defined(PETSC_USE_DEBUG) 342685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34279371c9d4SSatish Balay { 34289371c9d4SSatish Balay PetscInt data; 34299566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &data)); 343008401ef6SPierre Jolivet PetscCheck((data - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 343185535b8eSBarry Smith } 343285535b8eSBarry Smith #else 343308401ef6SPierre Jolivet PetscCheck((baij->colmap[in[j]] - 1) % bs == 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect colmap"); 343485535b8eSBarry Smith #endif 343585535b8eSBarry Smith #endif 343685535b8eSBarry Smith #if defined(PETSC_USE_CTABLE) 34379566063dSJacob Faibussowitsch PetscCall(PetscTableFind(baij->colmap, in[j] + 1, &col)); 343885535b8eSBarry Smith col = (col - 1) / bs; 343985535b8eSBarry Smith #else 344085535b8eSBarry Smith col = (baij->colmap[in[j]] - 1) / bs; 344185535b8eSBarry Smith #endif 344285535b8eSBarry Smith if (col < 0 && !((Mat_SeqBAIJ *)(baij->A->data))->nonew) { 34439566063dSJacob Faibussowitsch PetscCall(MatDisAssemble_MPIBAIJ(mat)); 344485535b8eSBarry Smith col = in[j]; 344585535b8eSBarry Smith } 344626fbe8dcSKarl Rupp } else col = in[j]; 34479566063dSJacob Faibussowitsch PetscCall(MatSetValuesBlocked_SeqBAIJ_Inlined(baij->B, row, col, barray, addv, im[i], in[j])); 344885535b8eSBarry Smith } 344985535b8eSBarry Smith } 345085535b8eSBarry Smith } else { 345185535b8eSBarry Smith if (!baij->donotstash) { 345285535b8eSBarry Smith if (roworiented) { 34539566063dSJacob Faibussowitsch PetscCall(MatStashValuesRowBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 345485535b8eSBarry Smith } else { 34559566063dSJacob Faibussowitsch PetscCall(MatStashValuesColBlocked_Private(&mat->bstash, im[i], n, in, v, m, n, i)); 345685535b8eSBarry Smith } 345785535b8eSBarry Smith } 345885535b8eSBarry Smith } 345985535b8eSBarry Smith } 346085535b8eSBarry Smith 346185535b8eSBarry Smith /* task normally handled by MatSetValuesBlocked() */ 34629566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(MAT_SetValues, mat, 0, 0, 0)); 346385535b8eSBarry Smith PetscFunctionReturn(0); 346485535b8eSBarry Smith } 3465dfb205c3SBarry Smith 3466dfb205c3SBarry Smith /*@ 3467483a2f95SBarry Smith MatCreateMPIBAIJWithArrays - creates a MPI BAIJ matrix using arrays that contain in standard block 3468dfb205c3SBarry Smith CSR format the local rows. 3469dfb205c3SBarry Smith 3470d083f849SBarry Smith Collective 3471dfb205c3SBarry Smith 3472dfb205c3SBarry Smith Input Parameters: 3473dfb205c3SBarry Smith + comm - MPI communicator 3474dfb205c3SBarry Smith . bs - the block size, only a block size of 1 is supported 3475dfb205c3SBarry Smith . m - number of local rows (Cannot be PETSC_DECIDE) 3476dfb205c3SBarry Smith . n - This value should be the same as the local size used in creating the 3477dfb205c3SBarry Smith x vector for the matrix-vector product y = Ax. (or PETSC_DECIDE to have 3478dfb205c3SBarry Smith calculated if N is given) For square matrices n is almost always m. 3479dfb205c3SBarry Smith . M - number of global rows (or PETSC_DETERMINE to have calculated if m is given) 3480dfb205c3SBarry Smith . N - number of global columns (or PETSC_DETERMINE to have calculated if n is given) 3481483a2f95SBarry Smith . i - row indices; that is i[0] = 0, i[row] = i[row-1] + number of block elements in that rowth block row of the matrix 3482dfb205c3SBarry Smith . j - column indices 3483dfb205c3SBarry Smith - a - matrix values 3484dfb205c3SBarry Smith 3485dfb205c3SBarry Smith Output Parameter: 3486dfb205c3SBarry Smith . mat - the matrix 3487dfb205c3SBarry Smith 3488dfb205c3SBarry Smith Level: intermediate 3489dfb205c3SBarry Smith 3490dfb205c3SBarry Smith Notes: 3491dfb205c3SBarry Smith The i, j, and a arrays ARE copied by this routine into the internal format used by PETSc; 3492dfb205c3SBarry Smith thus you CANNOT change the matrix entries by changing the values of a[] after you have 3493dfb205c3SBarry Smith called this routine. Use MatCreateMPIAIJWithSplitArrays() to avoid needing to copy the arrays. 3494dfb205c3SBarry Smith 34953adadaf3SJed Brown The order of the entries in values is the same as the block compressed sparse row storage format; that is, it is 34963adadaf3SJed Brown the same as a three dimensional array in Fortran values(bs,bs,nnz) that contains the first column of the first 34973adadaf3SJed Brown block, followed by the second column of the first block etc etc. That is, the blocks are contiguous in memory 34983adadaf3SJed Brown with column-major ordering within blocks. 34993adadaf3SJed Brown 3500dfb205c3SBarry Smith The i and j indices are 0 based, and i indices are indices corresponding to the local j array. 3501dfb205c3SBarry Smith 3502db781477SPatrick Sanan .seealso: `MatCreate()`, `MatCreateSeqAIJ()`, `MatSetValues()`, `MatMPIAIJSetPreallocation()`, `MatMPIAIJSetPreallocationCSR()`, 3503db781477SPatrick Sanan `MPIAIJ`, `MatCreateAIJ()`, `MatCreateMPIAIJWithSplitArrays()` 3504dfb205c3SBarry Smith @*/ 35059371c9d4SSatish Balay PetscErrorCode MatCreateMPIBAIJWithArrays(MPI_Comm comm, PetscInt bs, PetscInt m, PetscInt n, PetscInt M, PetscInt N, const PetscInt i[], const PetscInt j[], const PetscScalar a[], Mat *mat) { 3506dfb205c3SBarry Smith PetscFunctionBegin; 35075f80ce2aSJacob Faibussowitsch PetscCheck(!i[0], PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "i (row indices) must start with 0"); 35085f80ce2aSJacob Faibussowitsch PetscCheck(m >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "local number of rows (m) cannot be PETSC_DECIDE, or negative"); 35099566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, mat)); 35109566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*mat, m, n, M, N)); 35119566063dSJacob Faibussowitsch PetscCall(MatSetType(*mat, MATMPIBAIJ)); 35129566063dSJacob Faibussowitsch PetscCall(MatSetBlockSize(*mat, bs)); 35139566063dSJacob Faibussowitsch PetscCall(MatSetUp(*mat)); 35149566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_FALSE)); 35159566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocationCSR(*mat, bs, i, j, a)); 35169566063dSJacob Faibussowitsch PetscCall(MatSetOption(*mat, MAT_ROW_ORIENTED, PETSC_TRUE)); 3517dfb205c3SBarry Smith PetscFunctionReturn(0); 3518dfb205c3SBarry Smith } 3519e561ad89SHong Zhang 35209371c9d4SSatish Balay PetscErrorCode MatCreateMPIMatConcatenateSeqMat_MPIBAIJ(MPI_Comm comm, Mat inmat, PetscInt n, MatReuse scall, Mat *outmat) { 3521bd153df0SHong Zhang PetscInt m, N, i, rstart, nnz, Ii, bs, cbs; 3522bd153df0SHong Zhang PetscInt *indx; 3523bd153df0SHong Zhang PetscScalar *values; 3524e561ad89SHong Zhang 3525e561ad89SHong Zhang PetscFunctionBegin; 35269566063dSJacob Faibussowitsch PetscCall(MatGetSize(inmat, &m, &N)); 3527bd153df0SHong Zhang if (scall == MAT_INITIAL_MATRIX) { /* symbolic phase */ 3528bd153df0SHong Zhang Mat_SeqBAIJ *a = (Mat_SeqBAIJ *)inmat->data; 35292c6ba4edSHong Zhang PetscInt *dnz, *onz, mbs, Nbs, nbs; 3530bd153df0SHong Zhang PetscInt *bindx, rmax = a->rmax, j; 353177f764caSHong Zhang PetscMPIInt rank, size; 3532e561ad89SHong Zhang 35339566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 35349371c9d4SSatish Balay mbs = m / bs; 35359371c9d4SSatish Balay Nbs = N / cbs; 3536*48a46eb9SPierre Jolivet if (n == PETSC_DECIDE) PetscCall(PetscSplitOwnershipBlock(comm, cbs, &n, &N)); 3537da91a574SPierre Jolivet nbs = n / cbs; 3538e561ad89SHong Zhang 35399566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(rmax, &bindx)); 3540d0609cedSBarry Smith MatPreallocateBegin(comm, mbs, nbs, dnz, onz); /* inline function, output __end and __rstart are used below */ 354177f764caSHong Zhang 35429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 35439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &size)); 354477f764caSHong Zhang if (rank == size - 1) { 354577f764caSHong Zhang /* Check sum(nbs) = Nbs */ 35465f80ce2aSJacob Faibussowitsch PetscCheck(__end == Nbs, PETSC_COMM_SELF, PETSC_ERR_ARG_INCOMP, "Sum of local block columns %" PetscInt_FMT " != global block columns %" PetscInt_FMT, __end, Nbs); 354777f764caSHong Zhang } 354877f764caSHong Zhang 3549d0609cedSBarry Smith rstart = __rstart; /* block rstart of *outmat; see inline function MatPreallocateBegin */ 3550bd153df0SHong Zhang for (i = 0; i < mbs; i++) { 35519566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); /* non-blocked nnz and indx */ 3552647a6520SHong Zhang nnz = nnz / bs; 3553647a6520SHong Zhang for (j = 0; j < nnz; j++) bindx[j] = indx[j * bs] / bs; 35549566063dSJacob Faibussowitsch PetscCall(MatPreallocateSet(i + rstart, nnz, bindx, dnz, onz)); 35559566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i * bs, &nnz, &indx, NULL)); 3556e561ad89SHong Zhang } 35579566063dSJacob Faibussowitsch PetscCall(PetscFree(bindx)); 3558e561ad89SHong Zhang 35599566063dSJacob Faibussowitsch PetscCall(MatCreate(comm, outmat)); 35609566063dSJacob Faibussowitsch PetscCall(MatSetSizes(*outmat, m, n, PETSC_DETERMINE, PETSC_DETERMINE)); 35619566063dSJacob Faibussowitsch PetscCall(MatSetBlockSizes(*outmat, bs, cbs)); 35629566063dSJacob Faibussowitsch PetscCall(MatSetType(*outmat, MATBAIJ)); 35639566063dSJacob Faibussowitsch PetscCall(MatSeqBAIJSetPreallocation(*outmat, bs, 0, dnz)); 35649566063dSJacob Faibussowitsch PetscCall(MatMPIBAIJSetPreallocation(*outmat, bs, 0, dnz, 0, onz)); 3565d0609cedSBarry Smith MatPreallocateEnd(dnz, onz); 35669566063dSJacob Faibussowitsch PetscCall(MatSetOption(*outmat, MAT_NO_OFF_PROC_ENTRIES, PETSC_TRUE)); 3567e561ad89SHong Zhang } 3568e561ad89SHong Zhang 3569bd153df0SHong Zhang /* numeric phase */ 35709566063dSJacob Faibussowitsch PetscCall(MatGetBlockSizes(inmat, &bs, &cbs)); 35719566063dSJacob Faibussowitsch PetscCall(MatGetOwnershipRange(*outmat, &rstart, NULL)); 3572e561ad89SHong Zhang 3573e561ad89SHong Zhang for (i = 0; i < m; i++) { 35749566063dSJacob Faibussowitsch PetscCall(MatGetRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3575e561ad89SHong Zhang Ii = i + rstart; 35769566063dSJacob Faibussowitsch PetscCall(MatSetValues(*outmat, 1, &Ii, nnz, indx, values, INSERT_VALUES)); 35779566063dSJacob Faibussowitsch PetscCall(MatRestoreRow_SeqBAIJ(inmat, i, &nnz, &indx, &values)); 3578e561ad89SHong Zhang } 35799566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(*outmat, MAT_FINAL_ASSEMBLY)); 35809566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(*outmat, MAT_FINAL_ASSEMBLY)); 3581e561ad89SHong Zhang PetscFunctionReturn(0); 3582e561ad89SHong Zhang } 3583